Query 037454
Match_columns 282
No_of_seqs 133 out of 1333
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 12:26:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037454.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037454hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03389 laccase laccase, pla 100.0 1.4E-54 3E-59 425.7 29.6 275 1-282 114-539 (539)
2 PLN02792 oxidoreductase 100.0 4.8E-53 1E-57 412.3 27.9 270 1-282 127-523 (536)
3 PLN02991 oxidoreductase 100.0 2.8E-52 6.1E-57 406.8 28.2 270 1-282 139-530 (543)
4 PLN00044 multi-copper oxidase- 100.0 3.7E-52 8E-57 408.6 29.0 270 1-282 140-554 (596)
5 PLN02835 oxidoreductase 100.0 7.2E-52 1.6E-56 404.9 26.7 270 1-282 140-531 (539)
6 KOG1263 Multicopper oxidases [ 100.0 2.6E-51 5.6E-56 399.1 26.6 275 1-282 139-555 (563)
7 PLN02168 copper ion binding / 100.0 2.3E-50 4.9E-55 393.9 28.1 270 1-282 137-541 (545)
8 PLN02354 copper ion binding / 100.0 2.6E-50 5.7E-55 394.6 26.5 270 1-282 138-538 (552)
9 TIGR03388 ascorbase L-ascorbat 100.0 7.7E-50 1.7E-54 392.1 27.9 270 1-282 113-538 (541)
10 PLN02191 L-ascorbate oxidase 100.0 7.8E-50 1.7E-54 393.4 25.9 270 1-282 135-561 (574)
11 PLN02604 oxidoreductase 100.0 4E-49 8.7E-54 388.5 28.4 270 1-282 136-561 (566)
12 TIGR03390 ascorbOXfungal L-asc 100.0 1.5E-46 3.2E-51 368.3 25.3 258 1-265 121-534 (538)
13 TIGR01480 copper_res_A copper- 100.0 2.4E-32 5.2E-37 269.1 23.9 237 1-262 154-586 (587)
14 PRK10965 multicopper oxidase; 100.0 2.1E-31 4.6E-36 260.0 22.1 236 1-262 157-522 (523)
15 PRK10883 FtsI repressor; Provi 100.0 3.9E-31 8.5E-36 255.6 21.7 232 1-264 157-469 (471)
16 COG2132 SufI Putative multicop 99.9 6.7E-26 1.5E-30 218.7 21.4 233 1-263 142-449 (451)
17 PF07731 Cu-oxidase_2: Multico 99.9 1.7E-23 3.6E-28 170.4 4.5 92 163-265 38-137 (138)
18 PF00394 Cu-oxidase: Multicopp 99.8 2.2E-21 4.8E-26 162.3 8.8 106 13-118 3-159 (159)
19 TIGR02376 Cu_nitrite_red nitri 99.5 8.1E-14 1.8E-18 128.6 8.1 120 1-120 138-300 (311)
20 TIGR02376 Cu_nitrite_red nitri 97.7 6.4E-05 1.4E-09 69.6 6.0 74 162-265 62-147 (311)
21 PLN02604 oxidoreductase 97.3 0.00029 6.4E-09 70.3 4.9 78 164-265 60-145 (566)
22 TIGR03388 ascorbase L-ascorbat 95.9 0.012 2.6E-07 58.6 5.3 78 164-265 37-122 (541)
23 PLN02835 oxidoreductase 95.7 0.37 8E-06 48.0 14.9 176 43-238 49-272 (539)
24 PF07732 Cu-oxidase_3: Multico 95.2 0.017 3.6E-07 45.8 2.8 77 164-265 31-116 (117)
25 PLN02991 oxidoreductase 94.9 0.78 1.7E-05 45.8 14.4 174 43-238 48-271 (543)
26 PF00394 Cu-oxidase: Multicopp 94.4 0.044 9.4E-07 45.5 3.5 56 169-238 74-130 (159)
27 PLN02191 L-ascorbate oxidase 92.1 0.24 5.2E-06 49.8 5.3 78 163-264 58-143 (574)
28 TIGR03389 laccase laccase, pla 91.7 0.44 9.5E-06 47.5 6.6 63 162-238 190-257 (539)
29 COG4454 Uncharacterized copper 87.1 1.2 2.5E-05 37.0 4.7 43 215-264 112-158 (158)
30 TIGR03095 rusti_cyanin rusticy 86.3 0.65 1.4E-05 38.3 2.8 31 226-263 114-148 (148)
31 PF07731 Cu-oxidase_2: Multico 86.2 2.1 4.6E-05 34.0 5.8 47 61-107 62-120 (138)
32 PLN02168 copper ion binding / 84.5 2.6 5.5E-05 42.2 6.6 78 163-266 61-147 (545)
33 TIGR01480 copper_res_A copper- 82.3 2.5 5.5E-05 42.6 5.6 77 162-265 79-163 (587)
34 PLN02792 oxidoreductase 80.8 4.7 0.0001 40.3 6.8 172 43-236 36-260 (536)
35 PLN00044 multi-copper oxidase- 76.9 4.3 9.3E-05 41.1 5.2 67 177-266 79-150 (596)
36 PLN02354 copper ion binding / 76.7 7.3 0.00016 39.1 6.8 56 169-238 221-277 (552)
37 TIGR03390 ascorbOXfungal L-asc 73.8 8.8 0.00019 38.3 6.5 54 169-236 212-266 (538)
38 TIGR02656 cyanin_plasto plasto 73.0 4.9 0.00011 30.4 3.6 37 215-262 58-98 (99)
39 PRK10965 multicopper oxidase; 69.1 9.2 0.0002 38.1 5.4 75 162-266 80-167 (523)
40 PRK02888 nitrous-oxide reducta 62.3 25 0.00055 35.7 7.0 37 219-264 591-634 (635)
41 PRK06083 sulfur carrier protei 61.8 11 0.00024 27.9 3.4 53 41-93 17-78 (84)
42 PRK05659 sulfur carrier protei 60.7 14 0.00029 25.6 3.6 50 44-93 2-60 (66)
43 PF00127 Copper-bind: Copper b 52.3 34 0.00074 25.6 4.8 36 217-263 60-99 (99)
44 PRK10883 FtsI repressor; Provi 51.5 39 0.00085 33.2 6.3 56 169-237 233-289 (471)
45 PRK07440 hypothetical protein; 45.0 37 0.00081 24.0 3.8 51 43-93 5-64 (70)
46 PF12690 BsuPI: Intracellular 41.4 34 0.00073 25.1 3.1 17 81-97 17-34 (82)
47 PRK08053 sulfur carrier protei 40.4 40 0.00087 23.4 3.3 50 44-93 2-60 (66)
48 cd00565 ThiS ThiaminS ubiquiti 37.5 56 0.0012 22.4 3.7 49 45-93 2-59 (65)
49 PRK06488 sulfur carrier protei 34.8 58 0.0013 22.4 3.4 31 63-93 29-59 (65)
50 PF09122 DUF1930: Domain of un 29.8 12 0.00026 26.2 -0.8 39 56-95 13-55 (68)
51 TIGR03096 nitroso_cyanin nitro 28.0 61 0.0013 26.3 2.9 24 218-241 93-120 (135)
52 COG3731 SrlB Phosphotransferas 26.1 41 0.00088 26.7 1.4 45 182-245 58-106 (123)
53 PF11604 CusF_Ec: Copper bindi 25.9 88 0.0019 22.1 3.1 23 83-105 42-65 (70)
54 TIGR03096 nitroso_cyanin nitro 25.8 2E+02 0.0043 23.4 5.4 25 81-105 93-118 (135)
55 PRK06944 sulfur carrier protei 24.4 70 0.0015 21.8 2.3 31 63-93 29-59 (65)
56 COG5033 TFG3 Transcription ini 23.7 54 0.0012 28.7 1.9 13 188-200 76-88 (225)
57 TIGR01683 thiS thiamine biosyn 23.6 87 0.0019 21.4 2.7 31 63-93 28-58 (64)
58 TIGR03112 6_pyr_pter_rel 6-pyr 22.7 38 0.00083 26.5 0.7 13 182-194 20-32 (113)
59 TIGR02375 pseudoazurin pseudoa 22.1 97 0.0021 24.3 2.9 33 223-266 54-90 (116)
60 PF05354 Phage_attach: Phage H 21.9 50 0.0011 26.1 1.2 28 214-241 76-103 (117)
61 PF06525 SoxE: Sulfocyanin (So 21.3 1.4E+02 0.003 25.9 3.9 37 223-266 149-189 (196)
62 KOG1263 Multicopper oxidases [ 21.1 1.6E+02 0.0035 29.7 4.9 40 220-266 105-149 (563)
63 PRK02710 plastocyanin; Provisi 21.0 1.4E+02 0.0031 23.2 3.7 32 220-262 83-118 (119)
64 PF10633 NPCBM_assoc: NPCBM-as 20.3 1.4E+02 0.0031 21.0 3.3 44 62-107 24-75 (78)
No 1
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=1.4e-54 Score=425.66 Aligned_cols=275 Identities=43% Similarity=0.688 Sum_probs=201.7
Q ss_pred CEEeEEEEcCC---------C--CcEEEeccCCCCHHHHHHHHHhCCCCCCCCCceEEcCCCCCccccc-----------
Q 037454 1 MVLSLIILLKP---------G--IPIMFGECFNADPEAIISQALQRGGGPNVSDANTTNGLPGRSINCS----------- 58 (282)
Q Consensus 1 l~GplIV~p~~---------~--~~l~l~Dw~~~~~~~~~~~~~~~g~~~~~~d~~LING~~~~~~ncs----------- 58 (282)
|+|+|||+++. + ++|+|+||||++..+++..+...|..+.++|++||||+..+.++|+
T Consensus 114 l~G~lIV~~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~i~v~~ 193 (539)
T TIGR03389 114 VYGAIVILPKPGVPYPFPKPDREVPIILGEWWNADVEAVINQANQTGGAPNVSDAYTINGHPGPLYNCSSKDTFKLTVEP 193 (539)
T ss_pred ceEEEEEcCCCCCCCCCCCCCceEEEEecccccCCHHHHHHHHHhcCCCCCccceEEECCCcCCCCCCCCCCceEEEECC
Confidence 79999999532 1 7999999999998888777666665566889999999964333331
Q ss_pred --------------------CCCceEEEEEeCCceeeeeEeCEEEecCCCeeEEEEe-CC-CCceEEEEeeC--------
Q 037454 59 --------------------ACLGRVTIIEADAVHVKPFETKTLHSFPPDRQQKFLS-KP-NATFFTTARPY-------- 108 (282)
Q Consensus 59 --------------------~~~H~~~VIa~DG~~v~P~~~~~i~l~~GqR~dvlv~-~~-~g~y~i~~~~~-------- 108 (282)
.++|+|+|||+||.+++|+++++|.|++||||||+|+ ++ +|+||||+.+.
T Consensus 194 G~~~RlRlINa~~~~~~~~~idgH~~~VIa~DG~~~~P~~~~~l~i~~GqRydVlv~a~~~~g~y~i~~~~~~~~~~~~~ 273 (539)
T TIGR03389 194 GKTYLLRIINAALNDELFFAIANHTLTVVEVDATYTKPFKTKTIVIGPGQTTNVLLTADQSPGRYFMAARPYMDAPGAFD 273 (539)
T ss_pred CCEEEEEEEeccCCceEEEEECCCeEEEEEeCCcccCceEeCeEEecCCCEEEEEEECCCCCceEEEEEeccccCccCCC
Confidence 2569999999999999999999999999999999999 88 89999998642
Q ss_pred ---ceeEEecCCCCC---CC---CCCCCCCCc------------------------ccc----ccccc------------
Q 037454 109 ---VTGQGTSDNSTK---PI---LPARKDTSF------------------------PTS----FTNKL------------ 139 (282)
Q Consensus 109 ---~~~~~~y~~~~~---p~---~p~~~~~~~------------------------~~~----~~~~~------------ 139 (282)
..|+|+|+++.. |. .|..++... ... +...+
T Consensus 274 ~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (539)
T TIGR03389 274 NTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATNFSNKLRSLNSAQYPANVPVTIDRRLFFTIGLGLDPCPNNTCQGPN 353 (539)
T ss_pred CcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhHHHhhcccccccCCCCCCCCCCCeEEEEEeecccccCcccccccCC
Confidence 367899976421 21 111111000 000 00000
Q ss_pred ----c-cccccCCC-CCCCee----------------------eecC--------------CcccCCCCcE----EEcCC
Q 037454 140 ----G-TLAISHVP-VNAPKT----------------------LTCN--------------SSPEGPNGTM----FQNRS 173 (282)
Q Consensus 140 ----~-~~~~~~~~-~~~p~~----------------------~~~n--------------~~~~~~~g~~----~~n~~ 173 (282)
. .+++..|. +..|++ ...+ ..+..+.|++ |+|..
T Consensus 354 ~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~V~ivi~n~~ 433 (539)
T TIGR03389 354 GTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDFPANPPTKFNYTGTNLPNNLFTTNGTKVVRLKFNSTVELVLQDTS 433 (539)
T ss_pred CcEEEEEECCcccCCCCcchhhhhhcccCCccccCCccCCCccccCCCCCcccccccccCceEEEecCCCEEEEEEecCC
Confidence 0 11121110 112211 0000 0012233443 55653
Q ss_pred CCCCCCCceeeecCceEEEEecCCcCCCCCCCCCCCCCCCCcceEEEcCCCcEEEEEEEcCCccc----cccccCCCCCC
Q 037454 174 ILRAESHPLQLHGFNFFVVEQGSGNFDPNKHPSKFNLFYPIERNTEWCALGGWVAPRFLAHSPVV----CMVQVPPPAST 249 (282)
Q Consensus 174 ~~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~adnPG~----CHi~~H~~~~~ 249 (282)
......||||||||+||||++|.|.|+...+...+|+.||++|||++|+++||++|||+|||||+ |||+||+
T Consensus 434 ~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~vp~~g~vvirf~adNPG~W~~HCHi~~H~---- 509 (539)
T TIGR03389 434 ILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNTVGVPTGGWAAIRFVADNPGVWFMHCHLEVHT---- 509 (539)
T ss_pred cCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCCCCeeeeEEcCCCceEEEEEecCCCeEEEEEecccchh----
Confidence 22355999999999999999999999865555578999999999999999999999999999999 9999999
Q ss_pred ccCCccceeEEEEeCCccccccCCCCCCCCCCC
Q 037454 250 HKLGIEDGMDCIVFDGKLQNQKLLPPPADLPKC 282 (282)
Q Consensus 250 ~~~Gm~~~~~~~v~~~~~~~~~~~~~p~~~~~c 282 (282)
++|| +++|+|+++++..++++++|..+++|
T Consensus 510 -~~Gm--~~~~~~~~~~~~~~~~~~~p~~~~~c 539 (539)
T TIGR03389 510 -TWGL--KMAFLVDNGKGPNQSLLPPPSDLPSC 539 (539)
T ss_pred -hhcc--eEEEEEccCCCCccccCCCCccCCCC
Confidence 9999 99999999888778899999999999
No 2
>PLN02792 oxidoreductase
Probab=100.00 E-value=4.8e-53 Score=412.30 Aligned_cols=270 Identities=18% Similarity=0.219 Sum_probs=199.7
Q ss_pred CEEeEEEEcCC-----------CCcEEEeccCCCCHHHHHHHHHhCCCC-CCCCCceEEcCCCCCc---c----------
Q 037454 1 MVLSLIILLKP-----------GIPIMFGECFNADPEAIISQALQRGGG-PNVSDANTTNGLPGRS---I---------- 55 (282)
Q Consensus 1 l~GplIV~p~~-----------~~~l~l~Dw~~~~~~~~~~~~~~~g~~-~~~~d~~LING~~~~~---~---------- 55 (282)
|+|+|||++++ +++|+|+||||++..++. .++..|.. +.++|++||||+++.. +
T Consensus 127 l~G~liI~~~~~~~~p~~~~d~e~~i~l~Dw~~~~~~~~~-~~~~~g~~~~~~~d~~liNG~~~~~~~~~~v~~Gk~yRl 205 (536)
T PLN02792 127 GYGSLRIYSLPRIPVPFPEPAGDFTFLIGDWYRRNHTTLK-KILDGGRKLPLMPDGVMINGQGVSYVYSITVDKGKTYRF 205 (536)
T ss_pred cccceEEeCCcccCcCCCcccceeEEEecccccCCHHHHH-HHhhccCcCCCCCCEEEEeccCCCCcceEEECCCCEEEE
Confidence 68999998532 179999999999876643 34445543 3389999999997421 1
Q ss_pred ---cc--------cCCCceEEEEEeCCceeeeeEeCEEEecCCCeeEEEEe-CC-CCceEEEEeeC-------ceeEEec
Q 037454 56 ---NC--------SACLGRVTIIEADAVHVKPFETKTLHSFPPDRQQKFLS-KP-NATFFTTARPY-------VTGQGTS 115 (282)
Q Consensus 56 ---nc--------s~~~H~~~VIa~DG~~v~P~~~~~i~l~~GqR~dvlv~-~~-~g~y~i~~~~~-------~~~~~~y 115 (282)
|. +.++|+|+|||+||++++|+++++|.|++||||||||+ ++ +|+|||++.+. ..|+++|
T Consensus 206 RliNa~~~~~~~f~i~gH~~tVI~~DG~~v~p~~~~~l~i~~GqRydVlV~a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y 285 (536)
T PLN02792 206 RISNVGLQTSLNFEILGHQLKLIEVEGTHTVQSMYTSLDIHVGQTYSVLVTMDQPPQNYSIVVSTRFIAAKVLVSSTLHY 285 (536)
T ss_pred EEEEcCCCceEEEEECCcEEEEEEeCCccCCCcceeEEEEccCceEEEEEEcCCCCceEEEEEEeccCCCCCceEEEEEE
Confidence 22 23789999999999999999999999999999999999 88 79999999862 3689999
Q ss_pred CCCCC-----CCCCCCCCCCcccccc----------------------------ccc--------------ccccccCCC
Q 037454 116 DNSTK-----PILPARKDTSFPTSFT----------------------------NKL--------------GTLAISHVP 148 (282)
Q Consensus 116 ~~~~~-----p~~p~~~~~~~~~~~~----------------------------~~~--------------~~~~~~~~~ 148 (282)
+++.. |.+|.+++......+. ..+ .++++..|.
T Consensus 286 ~g~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~s~~ 365 (536)
T PLN02792 286 SNSKGHKIIHARQPDPDDLEWSIKQAQSIRTNLTASGPRTNPQGSYHYGKMKISRTLILESSAALVKRKQRYAINGVSFV 365 (536)
T ss_pred CCCCCCCCCCCCCCCcCCccccccchhhhhhccCCCCCCCCCCcccccceeccceeEEecccccccCceeEEEECCcccC
Confidence 87532 2233332221100000 000 012222221
Q ss_pred -CCCCeeeec--C--Cc----------------------ccCCCCcE----EEcCCCCCCCCCceeeecCceEEEEecCC
Q 037454 149 -VNAPKTLTC--N--SS----------------------PEGPNGTM----FQNRSILRAESHPLQLHGFNFFVVEQGSG 197 (282)
Q Consensus 149 -~~~p~~~~~--n--~~----------------------~~~~~g~~----~~n~~~~~~~~HP~HLHG~~F~Vl~~g~G 197 (282)
+++|++... + .. +..+.|++ |||. ....||||||||+||||++|.|
T Consensus 366 ~p~~p~L~a~~~~~~g~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~VeiViqn~---~~~~HP~HLHGh~F~Vvg~G~G 442 (536)
T PLN02792 366 PSDTPLKLADHFKIKGVFKVGSIPDKPRRGGGMRLDTSVMGAHHNAFLEIIFQNR---EKIVQSYHLDGYNFWVVGINKG 442 (536)
T ss_pred CCCCchhhhhhhccCCCcCcccCccCCcccCCCccCceEEEcCCCCEEEEEEECC---CCCCCCeeeCCCceEEEeecCC
Confidence 233333210 0 00 11223332 6665 4678999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCcceEEEcCCCcEEEEEEEcCCccc----cccccCCCCCCccCCccceeEEEEeCCccccccCC
Q 037454 198 NFDPNKHPSKFNLFYPIERNTEWCALGGWVAPRFLAHSPVV----CMVQVPPPASTHKLGIEDGMDCIVFDGKLQNQKLL 273 (282)
Q Consensus 198 ~~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~adnPG~----CHi~~H~~~~~~~~Gm~~~~~~~v~~~~~~~~~~~ 273 (282)
.|++. +...||+.||++|||+.|+++||++|||+|||||+ |||++|+ .+|| +++|+|.++....++++
T Consensus 443 ~~~~~-~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNPGvW~~HCh~~~h~-----~~Gm--~~~~~v~~~~~~~~~~~ 514 (536)
T PLN02792 443 IWSRA-SRREYNLKDAISRSTTQVYPESWTAVYVALDNVGMWNLRSQFWARQ-----YLGQ--QFYLRVYSPTHSLKDEY 514 (536)
T ss_pred CCCcc-cccccCcCCCCccceEEECCCCEEEEEEEeeCCEEEeeeEcchhcc-----ccce--EEEEEEccCCCcccccc
Confidence 99863 45679999999999999999999999999999999 9999999 9999 99999999988888999
Q ss_pred CCCCCCCCC
Q 037454 274 PPPADLPKC 282 (282)
Q Consensus 274 ~~p~~~~~c 282 (282)
+||.+.+.|
T Consensus 515 ~pP~~~~~C 523 (536)
T PLN02792 515 PLPKNALLC 523 (536)
T ss_pred CCCcccCcc
Confidence 999999999
No 3
>PLN02991 oxidoreductase
Probab=100.00 E-value=2.8e-52 Score=406.78 Aligned_cols=270 Identities=17% Similarity=0.229 Sum_probs=200.4
Q ss_pred CEEeEEEEcCC-----------CCcEEEeccCCCCHHHHHHHHHhCCCCCCCCCceEEcCCCCC-c-------------c
Q 037454 1 MVLSLIILLKP-----------GIPIMFGECFNADPEAIISQALQRGGGPNVSDANTTNGLPGR-S-------------I 55 (282)
Q Consensus 1 l~GplIV~p~~-----------~~~l~l~Dw~~~~~~~~~~~~~~~g~~~~~~d~~LING~~~~-~-------------~ 55 (282)
|+|+|||++++ +++|+|+||||++..++... +..++.++++|++||||++.. . +
T Consensus 139 l~G~lIV~~~~~~~~p~~~~d~d~~i~l~DW~~~~~~~~~~~-~~~~~~~~~~d~~liNG~~~~~~~~v~~G~~yRlRiI 217 (543)
T PLN02991 139 GFGAIRISSRPLIPVPFPAPADDYTVLIGDWYKTNHKDLRAQ-LDNGGKLPLPDGILINGRGSGATLNIEPGKTYRLRIS 217 (543)
T ss_pred CeeeEEEeCCcccCcccccccceeEEEecceecCCHHHHHHH-hhcCCCCCCCCEEEEccCCCCceEEECCCCEEEEEEE
Confidence 68999999542 18999999999987665443 345556678999999999752 1 1
Q ss_pred cc--------cCCCceEEEEEeCCceeeeeEeCEEEecCCCeeEEEEe-CC-CCceEEEEee-------CceeEEecCCC
Q 037454 56 NC--------SACLGRVTIIEADAVHVKPFETKTLHSFPPDRQQKFLS-KP-NATFFTTARP-------YVTGQGTSDNS 118 (282)
Q Consensus 56 nc--------s~~~H~~~VIa~DG~~v~P~~~~~i~l~~GqR~dvlv~-~~-~g~y~i~~~~-------~~~~~~~y~~~ 118 (282)
|. +.++|+|+|||+||++++|+++++|.|++||||||||+ ++ .|+||||+.+ ...|+++|+++
T Consensus 218 Na~~~~~~~~~idgH~~tVIa~DG~~~~p~~~~~l~i~~GQRydvlv~a~~~~~~y~i~~~~~~~~~~~~~~AIl~Y~g~ 297 (543)
T PLN02991 218 NVGLQNSLNFRIQNHTMKLVEVEGTHTIQTPFSSLDVHVGQSYSVLITADQPAKDYYIVVSSRFTSKILITTGVLHYSNS 297 (543)
T ss_pred eccCCeeEEEEECCCEEEEEEeCCccccceeeeEEEEcCCcEEEEEEECCCCCCcEEEEEeeccCCCCcceEEEEEeCCC
Confidence 32 24789999999999999999999999999999999999 88 8899999875 23789999875
Q ss_pred CCC---CCCC------C--CCCC-----------cc---c-------ccccc--c------------ccccccCCC-CCC
Q 037454 119 TKP---ILPA------R--KDTS-----------FP---T-------SFTNK--L------------GTLAISHVP-VNA 151 (282)
Q Consensus 119 ~~p---~~p~------~--~~~~-----------~~---~-------~~~~~--~------------~~~~~~~~~-~~~ 151 (282)
..+ .+|. + +... .. . ..... + -++++..|. +..
T Consensus 298 ~~~~~~~~p~~p~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~ 377 (543)
T PLN02991 298 AGPVSGPIPDGPIQLSWSFDQARAIKTNLTASGPRPNPQGSYHYGKINITRTIRLANSAGNIEGKQRYAVNSASFYPADT 377 (543)
T ss_pred CCCCCCCCCCCCccccccccchhhhhhcccCCCCCCCCCccccccccccceeEEEeecccccCceEEEEECCCccCCCCC
Confidence 321 1111 0 0000 00 0 00000 0 012222221 233
Q ss_pred Ceeeec----C---------------------CcccCCCCcE----EEcCCCCCCCCCceeeecCceEEEEecCCcCCCC
Q 037454 152 PKTLTC----N---------------------SSPEGPNGTM----FQNRSILRAESHPLQLHGFNFFVVEQGSGNFDPN 202 (282)
Q Consensus 152 p~~~~~----n---------------------~~~~~~~g~~----~~n~~~~~~~~HP~HLHG~~F~Vl~~g~G~~~~~ 202 (282)
|++... + ..+..+.+++ |||. ....||||||||+||||++|.|.|++.
T Consensus 378 p~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~VeiViqn~---~~~~HP~HLHGh~F~Vvg~G~G~f~~~ 454 (543)
T PLN02991 378 PLKLADYFKIAGVYNPGSIPDQPTNGAIFPVTSVMQTDYKAFVEIVFENW---EDIVQTWHLDGYSFYVVGMELGKWSAA 454 (543)
T ss_pred ChhhhhhhcccCccccccccccCCCCccccCCcEEEcCCCCEEEEEEeCC---CCCCCCeeeCCcceEEEEeCCCCCCcc
Confidence 432100 0 0011233432 6665 467999999999999999999999865
Q ss_pred CCCCCCCCCCCCcceEEEcCCCcEEEEEEEcCCccc----cccccCCCCCCccCCccceeEEEEeCCccccccCCCCCCC
Q 037454 203 KHPSKFNLFYPIERNTEWCALGGWVAPRFLAHSPVV----CMVQVPPPASTHKLGIEDGMDCIVFDGKLQNQKLLPPPAD 278 (282)
Q Consensus 203 ~~~~~~n~~~p~~rDTv~v~~~g~~~irf~adnPG~----CHi~~H~~~~~~~~Gm~~~~~~~v~~~~~~~~~~~~~p~~ 278 (282)
+...||+.||++|||+.||++||++|||+|||||+ |||.+|+ ..|| ++++.|++++...+++++||.+
T Consensus 455 -~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~W~~HCHi~~h~-----~~gm--~~~~~v~~~~~~~~~~~~~P~~ 526 (543)
T PLN02991 455 -SRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDNVGMWNLRSELWERQ-----YLGQ--QFYMRVYTTSTSLRDEYLIPKN 526 (543)
T ss_pred -cccccCCCCCCcccEEEECCCCEEEEEEECCCCEEeeeeeCccccc-----cccE--EEEEEecCCCCccccccCCCcc
Confidence 45679999999999999999999999999999999 9999999 9999 9999999998888899999999
Q ss_pred CCCC
Q 037454 279 LPKC 282 (282)
Q Consensus 279 ~~~c 282 (282)
.++|
T Consensus 527 ~~~C 530 (543)
T PLN02991 527 ALLC 530 (543)
T ss_pred cCcc
Confidence 9999
No 4
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=3.7e-52 Score=408.62 Aligned_cols=270 Identities=20% Similarity=0.229 Sum_probs=199.5
Q ss_pred CEEeEEEEcCC------------CCcEEEeccCCCCHHHHHHHHHhCCCCCCCCCceEEcCCCCCccccc----------
Q 037454 1 MVLSLIILLKP------------GIPIMFGECFNADPEAIISQALQRGGGPNVSDANTTNGLPGRSINCS---------- 58 (282)
Q Consensus 1 l~GplIV~p~~------------~~~l~l~Dw~~~~~~~~~~~~~~~g~~~~~~d~~LING~~~~~~ncs---------- 58 (282)
|+|+|||++++ +.+|+|+||||++..++ ...+..|..+.++|++||||++...+||+
T Consensus 140 l~GalII~~~~~~~~P~~~~~~~e~~i~l~DW~~~~~~~~-~~~l~~g~~~~~~d~~lING~g~~~~n~~~~~~~~~~~~ 218 (596)
T PLN00044 140 GYGAITINNRDVIPIPFGFPDGGDITLFIADWYARDHRAL-RRALDAGDLLGAPDGVLINAFGPYQYNDSLVPPGITYER 218 (596)
T ss_pred CeeEEEEcCcccccccccCCcccceEEEecccccCCHHHH-HHHHhcCCCCCCCCceEEcccCccccCCccccCCCccce
Confidence 79999999542 18999999999987654 44555565556889999999976433432
Q ss_pred -------------------------CCCceEEEEEeCCceeeeeEeCEEEecCCCeeEEEEe-CC-CC-ceEEEEeeC--
Q 037454 59 -------------------------ACLGRVTIIEADAVHVKPFETKTLHSFPPDRQQKFLS-KP-NA-TFFTTARPY-- 108 (282)
Q Consensus 59 -------------------------~~~H~~~VIa~DG~~v~P~~~~~i~l~~GqR~dvlv~-~~-~g-~y~i~~~~~-- 108 (282)
.++|+|+|||+||.+++|+++++|.|++||||||||+ ++ ++ +||||+.+.
T Consensus 219 i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa~DG~~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~~~~ 298 (596)
T PLN00044 219 INVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVEAEGSYTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASARFV 298 (596)
T ss_pred EEECCCCEEEEEEEEccCCceEEEEECCCEEEEEEeCCcccCceeeeeEEEcCCceEEEEEECCCCCCCceEEEEecccc
Confidence 2469999999999999999999999999999999999 88 54 999998641
Q ss_pred ---------ceeEEecCCCCC------CCCCC-CCCCCcccccccccc--------------------------------
Q 037454 109 ---------VTGQGTSDNSTK------PILPA-RKDTSFPTSFTNKLG-------------------------------- 140 (282)
Q Consensus 109 ---------~~~~~~y~~~~~------p~~p~-~~~~~~~~~~~~~~~-------------------------------- 140 (282)
..|+++|.++.. |.+|. +++...+..+...++
T Consensus 299 ~~~~~~~~~~~AIl~Y~~~~~~~~~~~P~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 378 (596)
T PLN00044 299 DAAVVDKLTGVAILHYSNSQGPASGPLPDAPDDQYDTAFSINQARSIRWNVTASGARPNPQGSFHYGDITVTDVYLLQSM 378 (596)
T ss_pred cCccccCcceeEEEEECCCCCCCCCCCCCCCcccCCchhhhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeeeeeccc
Confidence 257999977532 22332 333221110100000
Q ss_pred -----------cccccCCC-CCCCeeeec--C--Cc----c----------------cCCCCcE----EEcCCCCCCCCC
Q 037454 141 -----------TLAISHVP-VNAPKTLTC--N--SS----P----------------EGPNGTM----FQNRSILRAESH 180 (282)
Q Consensus 141 -----------~~~~~~~~-~~~p~~~~~--n--~~----~----------------~~~~g~~----~~n~~~~~~~~H 180 (282)
++++..|. +..|.+... + .. + ..+.+++ |||. ....|
T Consensus 379 ~~~~~~g~~~~s~Nnvsf~~p~~p~L~a~~~~~~gv~~~~fp~~pp~~~~~~~t~v~~~~~n~~VeiV~qn~---~~~~H 455 (596)
T PLN00044 379 APELIDGKLRATLNEISYIAPSTPLMLAQIFNVPGVFKLDFPNHPMNRLPKLDTSIINGTYKGFMEIIFQNN---ATNVQ 455 (596)
T ss_pred cccccCCeEEEEECcccCCCCCCcchhhhhccCCCcccCCCCCCCCccccccCceEEEcCCCCEEEEEEeCC---CCCCC
Confidence 11221221 223332100 0 00 0 1122332 6765 25799
Q ss_pred ceeeecCceEEEEecCCcCCCCCCCCCCCCCCCCcceEEEcCCCcEEEEEEEcCCccc----cccccCCCCCCccCCccc
Q 037454 181 PLQLHGFNFFVVEQGSGNFDPNKHPSKFNLFYPIERNTEWCALGGWVAPRFLAHSPVV----CMVQVPPPASTHKLGIED 256 (282)
Q Consensus 181 P~HLHG~~F~Vl~~g~G~~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~adnPG~----CHi~~H~~~~~~~~Gm~~ 256 (282)
|||||||+|+||++|.|+|++. +..+||+.||++|||+.|+++||++|||+|||||+ |||++|+ .+||
T Consensus 456 P~HLHGh~F~Vvg~G~G~~~~~-~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDNPG~W~lHCH~~~h~-----~~Gm-- 527 (596)
T PLN00044 456 SYHLDGYAFFVVGMDYGLWTDN-SRGTYNKWDGVARSTIQVFPGAWTAILVFLDNAGIWNLRVENLDAW-----YLGQ-- 527 (596)
T ss_pred CeeEcCccEEEEeecCCCCCCC-cccccccCCCCccceEEeCCCCeEEEEEecCCCEEehhhccCchhh-----cccC--
Confidence 9999999999999999999864 45689999999999999999999999999999999 9999999 9999
Q ss_pred eeEEEEeCCccc-cccCCCCCCCCCCC
Q 037454 257 GMDCIVFDGKLQ-NQKLLPPPADLPKC 282 (282)
Q Consensus 257 ~~~~~v~~~~~~-~~~~~~~p~~~~~c 282 (282)
++.|+|.++... .+++++||.+.+.|
T Consensus 528 ~~~~~v~~~~~~~~~~~~~pP~~~~~C 554 (596)
T PLN00044 528 EVYINVVNPEDNSNKTVLPIPDNAIFC 554 (596)
T ss_pred cEEEEEecCCCCccccccCCCcccCcc
Confidence 999999988865 67899999999999
No 5
>PLN02835 oxidoreductase
Probab=100.00 E-value=7.2e-52 Score=404.87 Aligned_cols=270 Identities=17% Similarity=0.219 Sum_probs=198.7
Q ss_pred CEEeEEEEcC-C--------C--CcEEEeccCCCCHHHHHHHHHhCCCCCCCCCceEEcCCCCCcc-------------c
Q 037454 1 MVLSLIILLK-P--------G--IPIMFGECFNADPEAIISQALQRGGGPNVSDANTTNGLPGRSI-------------N 56 (282)
Q Consensus 1 l~GplIV~p~-~--------~--~~l~l~Dw~~~~~~~~~~~~~~~g~~~~~~d~~LING~~~~~~-------------n 56 (282)
|+|+|||+++ + + ++|+|+||||++..++... +..|...+++|++||||+..+.+ |
T Consensus 140 l~G~lIV~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~-~~~g~~~~~~d~~liNG~~~~~~~v~~G~~yRlRliN 218 (539)
T PLN02835 140 GFGAINVYERPRIPIPFPLPDGDFTLLVGDWYKTSHKTLQQR-LDSGKVLPFPDGVLINGQTQSTFSGDQGKTYMFRISN 218 (539)
T ss_pred ccceeEEeCCCCCCcCCCCCCceEEEEeeccccCCHHHHHHH-hhcCCCCCCCceEEEccccCceEEECCCCEEEEEEEE
Confidence 7899999832 1 1 8999999999998775433 34555567899999999987532 3
Q ss_pred c--------cCCCceEEEEEeCCceeeeeEeCEEEecCCCeeEEEEe-CC-CCceEEEEee-------CceeEEecCCCC
Q 037454 57 C--------SACLGRVTIIEADAVHVKPFETKTLHSFPPDRQQKFLS-KP-NATFFTTARP-------YVTGQGTSDNST 119 (282)
Q Consensus 57 c--------s~~~H~~~VIa~DG~~v~P~~~~~i~l~~GqR~dvlv~-~~-~g~y~i~~~~-------~~~~~~~y~~~~ 119 (282)
. +.++|+|+|||+||++++|++++.|.|++||||||+|+ ++ +|+||||+.. ...|+++|+++.
T Consensus 219 a~~~~~~~f~i~gH~~~VI~~DG~~v~p~~~~~l~i~~GqRydvlv~~~~~~g~y~i~a~~~~~~~~~~~~ail~Y~~~~ 298 (539)
T PLN02835 219 VGLSTSLNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVAVLVTLNQSPKDYYIVASTRFTRQILTATAVLHYSNSR 298 (539)
T ss_pred cCCCccEEEEECCCEEEEEEECCccCCCceeeEEEECcCceEEEEEEcCCCCCcEEEEEEccccCCCcceEEEEEECCCC
Confidence 2 23689999999999999999999999999999999999 87 8999999864 236899998753
Q ss_pred C---CCCCCCC------CCCcccc-----------------c-------ccc--c------------ccccccCCC-CCC
Q 037454 120 K---PILPARK------DTSFPTS-----------------F-------TNK--L------------GTLAISHVP-VNA 151 (282)
Q Consensus 120 ~---p~~p~~~------~~~~~~~-----------------~-------~~~--~------------~~~~~~~~~-~~~ 151 (282)
. +.+|.+. +...... + ... + -++++..|. ++.
T Consensus 299 ~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~iN~~s~~~p~~ 378 (539)
T PLN02835 299 TPASGPLPALPSGELHWSMRQARTYRWNLTASAARPNPQGSFHYGKITPTKTIVLANSAPLINGKQRYAVNGVSYVNSDT 378 (539)
T ss_pred CCCCCCCCCCCccccccccchhhccccccCccccCCCCCccccccccCCCceEEEeccccccCCeEEEEECCcccCCCCC
Confidence 2 1122110 0000000 0 000 0 012222221 233
Q ss_pred Ceeee---------c---------CC-------cccCCCCcE----EEcCCCCCCCCCceeeecCceEEEEecCCcCCCC
Q 037454 152 PKTLT---------C---------NS-------SPEGPNGTM----FQNRSILRAESHPLQLHGFNFFVVEQGSGNFDPN 202 (282)
Q Consensus 152 p~~~~---------~---------n~-------~~~~~~g~~----~~n~~~~~~~~HP~HLHG~~F~Vl~~g~G~~~~~ 202 (282)
|.+.. + +. .+..+.|++ |+|. +...||||||||+||||++|.|.|++.
T Consensus 379 P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~Veivi~N~---~~~~HP~HLHGh~F~Vlg~G~g~~~~~ 455 (539)
T PLN02835 379 PLKLADYFGIPGVFSVNSIQSLPSGGPAFVATSVMQTSLHDFLEVVFQNN---EKTMQSWHLDGYDFWVVGYGSGQWTPA 455 (539)
T ss_pred ChhhhhhhcCCCccccCccccCCCCCccccCCeEEEcCCCCEEEEEEECC---CCCCCCCCCCCccEEEEeccCCCCCcc
Confidence 33210 0 00 011233442 6665 467999999999999999999999754
Q ss_pred CCCCCCCCCCCCcceEEEcCCCcEEEEEEEcCCccc----cccccCCCCCCccCCccceeEEEEeCCccccccCCCCCCC
Q 037454 203 KHPSKFNLFYPIERNTEWCALGGWVAPRFLAHSPVV----CMVQVPPPASTHKLGIEDGMDCIVFDGKLQNQKLLPPPAD 278 (282)
Q Consensus 203 ~~~~~~n~~~p~~rDTv~v~~~g~~~irf~adnPG~----CHi~~H~~~~~~~~Gm~~~~~~~v~~~~~~~~~~~~~p~~ 278 (282)
....+|+.||++|||+.|+++||++|||+|||||+ |||++|+ .+|| +++|+|.++....++++++|.+
T Consensus 456 -~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDNPG~Wl~HCHi~~H~-----~~Gm--~~~~~V~~~~~~~~~~~~~P~~ 527 (539)
T PLN02835 456 -KRSLYNLVDALTRHTAQVYPKSWTTILVSLDNQGMWNMRSAIWERQ-----YLGQ--QFYLRVWNQVHSLANEYDIPDN 527 (539)
T ss_pred -cccccCCCCCCccceEEeCCCCEEEEEEECcCCEEeeeeecchhhh-----hccc--EEEEEEccCCCccccccCCCcc
Confidence 24467999999999999999999999999999999 9999999 9999 9999999998888899999999
Q ss_pred CCCC
Q 037454 279 LPKC 282 (282)
Q Consensus 279 ~~~c 282 (282)
++.|
T Consensus 528 ~~~C 531 (539)
T PLN02835 528 ALLC 531 (539)
T ss_pred cccc
Confidence 9999
No 6
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.6e-51 Score=399.11 Aligned_cols=275 Identities=35% Similarity=0.584 Sum_probs=209.4
Q ss_pred CEEeEEEEcCCC-----------CcEEEeccCCC-CHHHHHHHHHhCCCCCCCCCceEEcCCCCCccccc----------
Q 037454 1 MVLSLIILLKPG-----------IPIMFGECFNA-DPEAIISQALQRGGGPNVSDANTTNGLPGRSINCS---------- 58 (282)
Q Consensus 1 l~GplIV~p~~~-----------~~l~l~Dw~~~-~~~~~~~~~~~~g~~~~~~d~~LING~~~~~~ncs---------- 58 (282)
++|+|||+|++. ++|+|+|||++ +..++...+...+..+..+|.++|||++.+.++|.
T Consensus 139 ~~G~liI~~~~~~p~pf~~pd~E~~ill~dW~~~~~~~~l~~~~~~~~~~p~~~D~~~iNg~~g~~~~~~~~l~v~pGkt 218 (563)
T KOG1263|consen 139 VFGALIINPRPGLPVPFPKPDKEFTILLGDWYKNLNHKNLKNFLDRTGALPNPSDGVLINGRSGFLYNCTPTLTVEPGKT 218 (563)
T ss_pred ceeEEEEcCCccCCCCCCCCCceeEEEeEeeccccCHHHHHHhhccCCCCCCCCCceEECCCCCcccCceeEEEEcCCCE
Confidence 689999997642 89999999996 88777777766676665699999999997666552
Q ss_pred -----------------CCCceEEEEEeCCceeeeeEeCEEEecCCCeeEEEEe-CC-CCceEEEEeeCc----------
Q 037454 59 -----------------ACLGRVTIIEADAVHVKPFETKTLHSFPPDRQQKFLS-KP-NATFFTTARPYV---------- 109 (282)
Q Consensus 59 -----------------~~~H~~~VIa~DG~~v~P~~~~~i~l~~GqR~dvlv~-~~-~g~y~i~~~~~~---------- 109 (282)
.++|+|+|||+||.+++|+.+++|.|+|||||||||+ ++ +++|+|++.++.
T Consensus 219 Y~lRiiN~g~~~~l~F~I~~H~ltvVe~Dg~y~~p~~~~~l~i~~GQ~~~vLvtadq~~~~Y~i~~~~~~~~~~~~~~~t 298 (563)
T KOG1263|consen 219 YRLRIINAGLNTSLNFSIANHQLTVVEVDGAYTKPFTTDSLDIHPGQTYSVLLTADQSPGDYYIAASPYFDASNVPFNLT 298 (563)
T ss_pred EEEEEEccccccceEEEECCeEEEEEEecceEEeeeeeceEEEcCCcEEEEEEeCCCCCCcEEEEEEeeeccCCcceeee
Confidence 3579999999999999999999999999999999999 98 789999988743
Q ss_pred -eeEEecCCCCCC---------CCCCCCCCCccccccccccccc------------------------------------
Q 037454 110 -TGQGTSDNSTKP---------ILPARKDTSFPTSFTNKLGTLA------------------------------------ 143 (282)
Q Consensus 110 -~~~~~y~~~~~p---------~~p~~~~~~~~~~~~~~~~~~~------------------------------------ 143 (282)
.++++|.+++.+ .+|..++...+..+...++++.
T Consensus 299 ~~~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~~~~~~~ 378 (563)
T KOG1263|consen 299 TTGILRYSGSTHPASEKLPIYPFLPPGNDTAWSTYQARSIRSLLSASFARPVPQGSYHYGLITIGLTLKLCNSDNKNNGK 378 (563)
T ss_pred EEEEEEEeCCcccCcccCcccccCCcccCchhhhhhhhcccccccccCcccCCCccccccceeeeccEEeccCCCCCCcE
Confidence 356889874221 1232222222211111111111
Q ss_pred ------ccCC-CCCCCeeee-c---------C-----C----cccC-CCCc-------------EEEcCCCCCCCCCcee
Q 037454 144 ------ISHV-PVNAPKTLT-C---------N-----S----SPEG-PNGT-------------MFQNRSILRAESHPLQ 183 (282)
Q Consensus 144 ------~~~~-~~~~p~~~~-~---------n-----~----~~~~-~~g~-------------~~~n~~~~~~~~HP~H 183 (282)
+..| .+.+|.++. + + . .+.. ..|+ ++||.+......||||
T Consensus 379 ~~~siN~isf~~P~tp~~l~~~~~~~~~~~~~d~p~~P~~~~~~~~~~~~t~v~~~~~~~~veIVlqN~~~~~~~~hp~H 458 (563)
T KOG1263|consen 379 LRASINNISFVTPKTPSLLAAYFKNIPGYFTNDFPDKPPIKFDYTGPTLGTSVMKLEFNSFVEIVLQNTSTGTQENHPNH 458 (563)
T ss_pred EEEEEcceEEECCCCchhhhhhhccCCccccCccCCCCccccCCccccccceEEEeecCCEEEEEEeCCccccCCCCccc
Confidence 1111 112222210 0 0 0 0000 1221 1888876678889999
Q ss_pred eecCceEEEEecCCcCCCCCCC-CCCCCCCCCcceEEEcCCCcEEEEEEEcCCccc----cccccCCCCCCccCCcccee
Q 037454 184 LHGFNFFVVEQGSGNFDPNKHP-SKFNLFYPIERNTEWCALGGWVAPRFLAHSPVV----CMVQVPPPASTHKLGIEDGM 258 (282)
Q Consensus 184 LHG~~F~Vl~~g~G~~~~~~~~-~~~n~~~p~~rDTv~v~~~g~~~irf~adnPG~----CHi~~H~~~~~~~~Gm~~~~ 258 (282)
||||+||||++|.|+|++..+. ..+|+.+|+.||||.|+++||++|||.|||||+ ||+++|+ .+|| ++
T Consensus 459 LHG~~F~Vvg~g~G~~~~~~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~adNPG~W~~HCHie~H~-----~~G~--~~ 531 (563)
T KOG1263|consen 459 LHGYNFYVVGYGFGNWDPAKDPRKKYNLVDPVSRDTVQVPPGGWTAIRFVADNPGVWLMHCHIEDHL-----YLGM--ET 531 (563)
T ss_pred eeceEEEEEEecccccCcCcChhhhcccCCCcccceEEeCCCCEEEEEEEcCCCcEEEEEEecHHHH-----hccC--eE
Confidence 9999999999999999985455 689999999999999999999999999999999 9999999 9999 99
Q ss_pred EEEEeCCccccccCCCCCCCCCCC
Q 037454 259 DCIVFDGKLQNQKLLPPPADLPKC 282 (282)
Q Consensus 259 ~~~v~~~~~~~~~~~~~p~~~~~c 282 (282)
+|+|.+++...+++.++|.+.++|
T Consensus 532 ~f~V~~~~~~~~~~~~~P~~~~~c 555 (563)
T KOG1263|consen 532 VFIVGNGEESLSSEYPPPKNLPKC 555 (563)
T ss_pred EEEEeCCCccCCcCCCCCCCcccc
Confidence 999999998889999999999999
No 7
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=2.3e-50 Score=393.88 Aligned_cols=270 Identities=19% Similarity=0.179 Sum_probs=190.0
Q ss_pred CEEeEEEEcCC---------C--CcEEEeccCCCCHHHHHHHHHhCCCCCCCCCceEEcCCCC--Ccc------------
Q 037454 1 MVLSLIILLKP---------G--IPIMFGECFNADPEAIISQALQRGGGPNVSDANTTNGLPG--RSI------------ 55 (282)
Q Consensus 1 l~GplIV~p~~---------~--~~l~l~Dw~~~~~~~~~~~~~~~g~~~~~~d~~LING~~~--~~~------------ 55 (282)
|+|+|||++++ + ++|+|+||||++..++.. .+..|...+++|++||||++. +.+
T Consensus 137 L~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~-~~~~g~~~~~~d~~liNG~~~~~~~~~v~~G~~yRlRi 215 (545)
T PLN02168 137 GYGAIRIYNPELVPVPFPKPDEEYDILIGDWFYADHTVMRA-SLDNGHSLPNPDGILFNGRGPEETFFAFEPGKTYRLRI 215 (545)
T ss_pred ceeEEEEcCCcccCcCcCcccceeeEEEEecCCCCHHHHHh-hhhcCCCCCCCCEEEEeccCCCcceEEeCCCCEEEEEE
Confidence 79999999542 1 789999999988655433 333443456899999999973 211
Q ss_pred -cc--------cCCCceEEEEEeCCceeeeeEeCEEEecCCCeeEEEEe-CC--CC---ceEEEEeeC-------ceeEE
Q 037454 56 -NC--------SACLGRVTIIEADAVHVKPFETKTLHSFPPDRQQKFLS-KP--NA---TFFTTARPY-------VTGQG 113 (282)
Q Consensus 56 -nc--------s~~~H~~~VIa~DG~~v~P~~~~~i~l~~GqR~dvlv~-~~--~g---~y~i~~~~~-------~~~~~ 113 (282)
|. +.++|+|+|||+||.+++|+++++|.|++||||||+|+ ++ .| +||||+.+. ..|++
T Consensus 216 iNa~~~~~~~~~IdgH~~tVIa~DG~~v~p~~~~~l~i~~GqRydvlv~a~~~~~g~~~~Y~i~a~~~~~~~~~~~~ail 295 (545)
T PLN02168 216 SNVGLKTCLNFRIQDHDMLLVETEGTYVQKRVYSSLDIHVGQSYSVLVTAKTDPVGIYRSYYIVATARFTDAYLGGVALI 295 (545)
T ss_pred EeccCCceEEEEECCcEEEEEEECCeECCCceeeEEEEcCCceEEEEEEcCCCCCCCcceEEEEEEecccCCCcceEEEE
Confidence 22 24789999999999999999999999999999999999 75 34 899999863 36899
Q ss_pred ecCCCCC----C--CCCCCCCCCccccc----c------------------------ccc--------------cccccc
Q 037454 114 TSDNSTK----P--ILPARKDTSFPTSF----T------------------------NKL--------------GTLAIS 145 (282)
Q Consensus 114 ~y~~~~~----p--~~p~~~~~~~~~~~----~------------------------~~~--------------~~~~~~ 145 (282)
+|+++.. | ..|.+++......+ . ..+ -++++.
T Consensus 296 ~Y~~~~~~~~~p~p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iN~~ 375 (545)
T PLN02168 296 RYPNSPLDPVGPLPLAPALHDYFSSVEQALSIRMDLNVGAARSNPQGSYHYGRINVTRTIILHNDVMLSSGKLRYTINGV 375 (545)
T ss_pred EECCCCCCCCCCCCCCCcccccccccchhhhhhhcCCCCCCCCCCcccccccccccceeEEecccccccCceEEEEECCC
Confidence 9977522 1 11222211000000 0 000 012222
Q ss_pred CCC-CCCCeeeec----------C--C-------------cccCCCCcE----EEcCCCCCCCCCceeeecCceEEEEec
Q 037454 146 HVP-VNAPKTLTC----------N--S-------------SPEGPNGTM----FQNRSILRAESHPLQLHGFNFFVVEQG 195 (282)
Q Consensus 146 ~~~-~~~p~~~~~----------n--~-------------~~~~~~g~~----~~n~~~~~~~~HP~HLHG~~F~Vl~~g 195 (282)
.|. +.+|.++.. + . .+..+.|++ |||. ....||||||||+||||++|
T Consensus 376 s~~~p~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~VeiViqn~---~~~~HP~HLHGh~F~Vvg~g 452 (545)
T PLN02168 376 SFVYPGTPLKLVDHFQLNDTIIPGMFPVYPSNKTPTLGTSVVDIHYKDFYHIVFQNP---LFSLESYHIDGYNFFVVGYG 452 (545)
T ss_pred ccCCCCCchhhhhhcccccccccCCCccCCCcCccccCceEEEecCCCEEEEEEeCC---CCCCCCeeeCCCceEEEECC
Confidence 221 233332100 0 0 011233442 6665 46799999999999999999
Q ss_pred CCcCCCCCCCCCCCCCCCCcceEEEcCCCcEEEEEEEcCCccc----cccccCCCCCCccCCccceeEEEEeCCcc----
Q 037454 196 SGNFDPNKHPSKFNLFYPIERNTEWCALGGWVAPRFLAHSPVV----CMVQVPPPASTHKLGIEDGMDCIVFDGKL---- 267 (282)
Q Consensus 196 ~G~~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~adnPG~----CHi~~H~~~~~~~~Gm~~~~~~~v~~~~~---- 267 (282)
.|.|++.. ...||+.||++|||+.|+++||++|||+|||||+ |||++|. ..|| ++.|+|.+|.+
T Consensus 453 ~g~~~~~~-~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~Wl~HCHi~~~~-----h~g~--gl~~~v~~~~~e~p~ 524 (545)
T PLN02168 453 FGAWSESK-KAGYNLVDAVSRSTVQVYPYSWTAILIAMDNQGMWNVRSQKAEQW-----YLGQ--ELYMRVKGEGEEDPS 524 (545)
T ss_pred CCCCCccc-cccCCCCCCCccceEEeCCCCEEEEEEEccCCeEEeeeecCcccc-----eecC--cEEEEEEcccccCcc
Confidence 99998642 4578999999999999999999999999999999 9997777 7788 77777754443
Q ss_pred --ccccCCCCCCCCCCC
Q 037454 268 --QNQKLLPPPADLPKC 282 (282)
Q Consensus 268 --~~~~~~~~p~~~~~c 282 (282)
..++++++|.++++|
T Consensus 525 ~~~~~~~~~~P~~~~~c 541 (545)
T PLN02168 525 TIPVRDENPIPGNVIRC 541 (545)
T ss_pred ccccccccCCChhhccc
Confidence 456799999999999
No 8
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=2.6e-50 Score=394.56 Aligned_cols=270 Identities=18% Similarity=0.227 Sum_probs=195.8
Q ss_pred CEEeEEEEcCC-----------CCcEEEeccCCCCHHHHHHHHHhCCCCCCCCCceEEcCCCC-------Ccc-------
Q 037454 1 MVLSLIILLKP-----------GIPIMFGECFNADPEAIISQALQRGGGPNVSDANTTNGLPG-------RSI------- 55 (282)
Q Consensus 1 l~GplIV~p~~-----------~~~l~l~Dw~~~~~~~~~~~~~~~g~~~~~~d~~LING~~~-------~~~------- 55 (282)
|+|+|||++++ +++|+|+||||++..++.. ++..|..++++|++||||++. +.+
T Consensus 138 l~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~-~~~~g~~~~~~d~~liNG~~~~~~~~~~~~~~v~~Gk~ 216 (552)
T PLN02354 138 GFGGLRVNSRLLIPVPYADPEDDYTVLIGDWYTKSHTALKK-FLDSGRTLGRPDGVLINGKSGKGDGKDEPLFTMKPGKT 216 (552)
T ss_pred ccceEEEcCCcCCCCCCCCcCceEEEEeeeeccCCHHHHHH-HHhcCCCCCCCCeEEEeCCcCCCCCCCceEEEECCCCE
Confidence 68999999542 1899999999998766543 444554456789999999963 211
Q ss_pred ------cc--------cCCCceEEEEEeCCceeeeeEeCEEEecCCCeeEEEEe-CC-CCceEEEEeeC-------ceeE
Q 037454 56 ------NC--------SACLGRVTIIEADAVHVKPFETKTLHSFPPDRQQKFLS-KP-NATFFTTARPY-------VTGQ 112 (282)
Q Consensus 56 ------nc--------s~~~H~~~VIa~DG~~v~P~~~~~i~l~~GqR~dvlv~-~~-~g~y~i~~~~~-------~~~~ 112 (282)
|. +.++|+|+|||+||++++|++++.|.|++||||||||+ ++ +|+|||++.+. ..|+
T Consensus 217 yRlRiINa~~~~~~~f~IdgH~~tVIa~DG~~v~p~~~~~l~i~~GqRydVlv~a~~~~g~Y~i~a~~~~~~~~~~~~ai 296 (552)
T PLN02354 217 YRYRICNVGLKSSLNFRIQGHKMKLVEMEGSHVLQNDYDSLDVHVGQCFSVLVTANQAPKDYYMVASTRFLKKVLTTTGI 296 (552)
T ss_pred EEEEEEecCCCceEEEEECCceEEEEEeCCcccCCcceeEEEEccCceEEEEEECCCCCCcEEEEEeccccCCCccEEEE
Confidence 22 23689999999999999999999999999999999999 88 89999998741 3689
Q ss_pred EecCCCCC---CCCCCC-CCC--C--------c----------c-c--c---c--ccc--c------------ccccccC
Q 037454 113 GTSDNSTK---PILPAR-KDT--S--------F----------P-T--S---F--TNK--L------------GTLAISH 146 (282)
Q Consensus 113 ~~y~~~~~---p~~p~~-~~~--~--------~----------~-~--~---~--~~~--~------------~~~~~~~ 146 (282)
++|+++.. +..|.. .+. . . . . . + ... + -++++..
T Consensus 297 l~Y~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNn~s 376 (552)
T PLN02354 297 IRYEGGKGPASPELPEAPVGWAWSLNQFRSFRWNLTASAARPNPQGSYHYGKINITRTIKLVNSASKVDGKLRYALNGVS 376 (552)
T ss_pred EEECCCCCCCCCCCCCCCcccccchhhhhhhhhcccccccCCCCCCccccccccccceEEEecccccCCceEEEEECCcc
Confidence 99987532 112210 000 0 0 0 0 0 0 000 0 0122222
Q ss_pred CC-CCCCeeeec-----CC-----------------------cccCCCCcE----EEcCCCCCCCCCceeeecCceEEEE
Q 037454 147 VP-VNAPKTLTC-----NS-----------------------SPEGPNGTM----FQNRSILRAESHPLQLHGFNFFVVE 193 (282)
Q Consensus 147 ~~-~~~p~~~~~-----n~-----------------------~~~~~~g~~----~~n~~~~~~~~HP~HLHG~~F~Vl~ 193 (282)
|. ++.|.+... +. .+..+.|++ |||. ....||||||||+||||+
T Consensus 377 ~~~p~~P~L~~~~~~~~~g~~~~~~~~~~pp~~~~~~~~~~~v~~~~~~~~VeiVi~n~---~~~~HP~HLHGh~F~Vlg 453 (552)
T PLN02354 377 HVDPETPLKLAEYFGVADKVFKYDTIKDNPPAKITKIKIQPNVLNITFRTFVEIIFENH---EKSMQSWHLDGYSFFAVA 453 (552)
T ss_pred CCCCCCChHHhhhhcccCCccccCccccCCccccCccccCCeeEEcCCCCEEEEEEeCC---CCCCCCCcCCCccEEEEe
Confidence 21 233332100 00 011223332 6665 467999999999999999
Q ss_pred ecCCcCCCCCCCCCCCCCCCCcceEEEcCCCcEEEEEEEcCCccc----cccccCCCCCCccCCccceeEEEEeCCcccc
Q 037454 194 QGSGNFDPNKHPSKFNLFYPIERNTEWCALGGWVAPRFLAHSPVV----CMVQVPPPASTHKLGIEDGMDCIVFDGKLQN 269 (282)
Q Consensus 194 ~g~G~~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~adnPG~----CHi~~H~~~~~~~~Gm~~~~~~~v~~~~~~~ 269 (282)
+|.|.|++. ...++|+.||++|||+.||++||++|||+|||||+ |||.+|+ .+|| ++.|++.++....
T Consensus 454 ~G~G~~~~~-~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNPGvW~~HCHi~~H~-----~~g~--~l~~~v~~~~~~~ 525 (552)
T PLN02354 454 VEPGTWTPE-KRKNYNLLDAVSRHTVQVYPKSWAAILLTFDNAGMWNIRSENWERR-----YLGQ--QLYASVLSPERSL 525 (552)
T ss_pred ecCCCCCcc-ccccCCcCCCCccceEEeCCCCeEEEEEEecCCeEEeeeccccccc-----cccc--eEEEEEeCCcccc
Confidence 999999864 34578999999999999999999999999999999 9999999 9999 9999888777777
Q ss_pred ccCCCCCCCCCCC
Q 037454 270 QKLLPPPADLPKC 282 (282)
Q Consensus 270 ~~~~~~p~~~~~c 282 (282)
++++++|.+.+.|
T Consensus 526 ~~~~~~P~~~~~C 538 (552)
T PLN02354 526 RDEYNMPENALLC 538 (552)
T ss_pred CcCCCCCcccccc
Confidence 7888899999999
No 9
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=7.7e-50 Score=392.09 Aligned_cols=270 Identities=22% Similarity=0.295 Sum_probs=189.3
Q ss_pred CEEeEEEEcCC---C-------CcEEEeccCCCCHHHHHHHHHhCCC-CCCCCCceEEcCCCCCc---------------
Q 037454 1 MVLSLIILLKP---G-------IPIMFGECFNADPEAIISQALQRGG-GPNVSDANTTNGLPGRS--------------- 54 (282)
Q Consensus 1 l~GplIV~p~~---~-------~~l~l~Dw~~~~~~~~~~~~~~~g~-~~~~~d~~LING~~~~~--------------- 54 (282)
|+|+|||+++. . ++|+|+||+|++..+.......... ...++|++||||+++..
T Consensus 113 l~G~liV~~~~~~~~p~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~ 192 (541)
T TIGR03388 113 LYGSLIVDVPDGEKEPFHYDGEFNLLLSDWWHKSIHEQEVGLSSKPMRWIGEPQSLLINGRGQFNCSLAAKFSSTNLPQC 192 (541)
T ss_pred ceEEEEEecCCCCCCCccccceEEEEeecccCCCHHHHHhhcccCCCcCCCCCcceEECCCCCCCCccccccCccccchh
Confidence 79999999542 1 8999999999987665444332221 12478999999986421
Q ss_pred ------------c-------------cc--------cCCCceEEEEEeCCceeeeeEeCEEEecCCCeeEEEEe-CC-C-
Q 037454 55 ------------I-------------NC--------SACLGRVTIIEADAVHVKPFETKTLHSFPPDRQQKFLS-KP-N- 98 (282)
Q Consensus 55 ------------~-------------nc--------s~~~H~~~VIa~DG~~v~P~~~~~i~l~~GqR~dvlv~-~~-~- 98 (282)
+ |. +.++|+|+|||+||++++|++++.|.|++||||||+|+ ++ +
T Consensus 193 ~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~VIa~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~ 272 (541)
T TIGR03388 193 NLKGNEQCAPQILHVEPGKTYRLRIASTTALAALNFAIEGHKLTVVEADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPS 272 (541)
T ss_pred hccCCCCCCceEEEECCCCEEEEEEEcccccceEEEEECCCEEEEEEeCCEecccceeCeEEecCCCEEEEEEeCCCCCC
Confidence 0 11 12569999999999999999999999999999999999 87 4
Q ss_pred CceEEEEeeC--------ceeEEecCCCCC---C-----CCCCCCCCCcc---------------------cc-c---c-
Q 037454 99 ATFFTTARPY--------VTGQGTSDNSTK---P-----ILPARKDTSFP---------------------TS-F---T- 136 (282)
Q Consensus 99 g~y~i~~~~~--------~~~~~~y~~~~~---p-----~~p~~~~~~~~---------------------~~-~---~- 136 (282)
++||||+... ..|+|+|++... | ..|.+.+.... .. + .
T Consensus 273 ~~y~ira~~~~~~~~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (541)
T TIGR03388 273 RNYWISVGVRGRKPNTPPGLTVLNYYPNSPSRLPPTPPPVTPAWDDFDRSKAFSLAIKAAMGSPKPPETSDRRIVLLNTQ 352 (541)
T ss_pred CcEEEEEecccCCCCCccEEEEEEECCCCCCCCCCCCCCCCCCccccchhhccchhhhccccCCCCCCCCCcEEEEeccC
Confidence 5999998643 358899976421 1 12322211000 00 0 0
Q ss_pred cccc-----cccccCCC-CCCCeeee-------------------c-----------C-----CcccCCCCcE----EEc
Q 037454 137 NKLG-----TLAISHVP-VNAPKTLT-------------------C-----------N-----SSPEGPNGTM----FQN 171 (282)
Q Consensus 137 ~~~~-----~~~~~~~~-~~~p~~~~-------------------~-----------n-----~~~~~~~g~~----~~n 171 (282)
.... ++++..|. +..|.+.. . + ..+..++|++ |+|
T Consensus 353 ~~~~~~~~~~~n~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n 432 (541)
T TIGR03388 353 NKINGYTKWAINNVSLTLPHTPYLGSLKYNLLNAFDQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQN 432 (541)
T ss_pred cccCceEEEEECcccCCCCCccHHHHHhhcCCccccCCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEEEC
Confidence 0000 12222221 11221100 0 0 0122345554 556
Q ss_pred CCCC---CCCCCceeeecCceEEEEecCCcCCCCCCCCCCCCCCCCcceEEEcCCCcEEEEEEEcCCccc----cccccC
Q 037454 172 RSIL---RAESHPLQLHGFNFFVVEQGSGNFDPNKHPSKFNLFYPIERNTEWCALGGWVAPRFLAHSPVV----CMVQVP 244 (282)
Q Consensus 172 ~~~~---~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~adnPG~----CHi~~H 244 (282)
...+ ....||||||||+||||++|.|.|+.+.+...+|+.||++|||++|+++||++|||+|||||+ |||+||
T Consensus 433 ~~~~~~~~~~~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adNPG~W~~HCHi~~H 512 (541)
T TIGR03388 433 ANTLNGNNSETHPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVADNPGVWAFHCHIEPH 512 (541)
T ss_pred CccccCCCCCCCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECCCCeEeeeeccchhh
Confidence 5311 256899999999999999999999866556689999999999999999999999999999999 999999
Q ss_pred CCCCCccCCccceeEEEEeCCccccccCCCCCCCCCCC
Q 037454 245 PPASTHKLGIEDGMDCIVFDGKLQNQKLLPPPADLPKC 282 (282)
Q Consensus 245 ~~~~~~~~Gm~~~~~~~v~~~~~~~~~~~~~p~~~~~c 282 (282)
+ ++|| +++|++.++ +++++|.++++|
T Consensus 513 ~-----~~GM--~~~~~e~~~-----~~~~~P~~~~~C 538 (541)
T TIGR03388 513 L-----HMGM--GVVFAEGVE-----KVGKLPKEALGC 538 (541)
T ss_pred h-----hccc--EEEEecccc-----ccCCCCccccCC
Confidence 9 9999 999987643 577789999999
No 10
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=7.8e-50 Score=393.38 Aligned_cols=270 Identities=19% Similarity=0.266 Sum_probs=184.8
Q ss_pred CEEeEEEEcCC----C------CcEEEeccCCCCHHHHHHHHHhCC-CCCCCCCceEEcCCCCCcc--------------
Q 037454 1 MVLSLIILLKP----G------IPIMFGECFNADPEAIISQALQRG-GGPNVSDANTTNGLPGRSI-------------- 55 (282)
Q Consensus 1 l~GplIV~p~~----~------~~l~l~Dw~~~~~~~~~~~~~~~g-~~~~~~d~~LING~~~~~~-------------- 55 (282)
|+|||||+++. . ++|+|+||||++..+......... ....++|++||||+++..+
T Consensus 135 l~G~liV~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~ 214 (574)
T PLN02191 135 LYGSLIVDVAKGPKERLRYDGEFNLLLSDWWHESIPSQELGLSSKPMRWIGEAQSILINGRGQFNCSLAAQFSNGTELPM 214 (574)
T ss_pred CEEEEEEccCCCCCCCCCCCeeEEEeeeccccCChHHHHHhhccCCCCcCCCCCceEECCCCCCCCcccccccCCccccc
Confidence 79999998422 1 799999999987654333322111 1225789999999874211
Q ss_pred ---------------------------cc--------cCCCceEEEEEeCCceeeeeEeCEEEecCCCeeEEEEe-CC-C
Q 037454 56 ---------------------------NC--------SACLGRVTIIEADAVHVKPFETKTLHSFPPDRQQKFLS-KP-N 98 (282)
Q Consensus 56 ---------------------------nc--------s~~~H~~~VIa~DG~~v~P~~~~~i~l~~GqR~dvlv~-~~-~ 98 (282)
|. +.++|+|+|||+||.+++|+++++|.|++||||||||+ ++ +
T Consensus 215 ~~~~~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~ 294 (574)
T PLN02191 215 CTFKEGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQGHKLVVVEADGNYITPFTTDDIDIYSGESYSVLLTTDQDP 294 (574)
T ss_pred ceeccCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEECCCeEEEEEcCCeeccceEeeeEEEcCCCeEEEEEECCCCC
Confidence 11 12469999999999999999999999999999999999 87 5
Q ss_pred -CceEEEEeeC--------ceeEEecCCCCC---C-----CCCCCCCCCccc----------------------cccccc
Q 037454 99 -ATFFTTARPY--------VTGQGTSDNSTK---P-----ILPARKDTSFPT----------------------SFTNKL 139 (282)
Q Consensus 99 -g~y~i~~~~~--------~~~~~~y~~~~~---p-----~~p~~~~~~~~~----------------------~~~~~~ 139 (282)
++||||+... ..|+++|.+... | .+|.+++..... .+....
T Consensus 295 ~~~y~ira~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 374 (574)
T PLN02191 295 SQNYYISVGVRGRKPNTTQALTILNYVTAPASKLPSSPPPVTPRWDDFERSKNFSKKIFSAMGSPSPPKKYRKRLILLNT 374 (574)
T ss_pred CCCEEEEEEccccCCCCCCceEEEEECCCCCCCCCCCCCCCCCcccccchhhcccccccccccCCCCCCcccceEEEecc
Confidence 5999998543 358899965321 1 122222110000 000000
Q ss_pred ---------ccccccCCC-CCCCeeeec-----------------------------------CCcccCCCCcE----EE
Q 037454 140 ---------GTLAISHVP-VNAPKTLTC-----------------------------------NSSPEGPNGTM----FQ 170 (282)
Q Consensus 140 ---------~~~~~~~~~-~~~p~~~~~-----------------------------------n~~~~~~~g~~----~~ 170 (282)
-.+++..|. +..|.+... +..+..+.|++ |+
T Consensus 375 ~~~~~~~~~~~~n~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~ 454 (574)
T PLN02191 375 QNLIDGYTKWAINNVSLVTPATPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMNPPPFPNTTTGNGIYVFPFNVTVDVIIQ 454 (574)
T ss_pred cceeCCeEEEEECcccCcCCCcchHHHHhhccCcccccCCCcccccccccccCCCccccccccceeEEecCCCEEEEEEE
Confidence 001222221 122221100 00011223443 56
Q ss_pred cCCCC---CCCCCceeeecCceEEEEecCCcCCCCCCCCCCCCCCCCcceEEEcCCCcEEEEEEEcCCccc----ccccc
Q 037454 171 NRSIL---RAESHPLQLHGFNFFVVEQGSGNFDPNKHPSKFNLFYPIERNTEWCALGGWVAPRFLAHSPVV----CMVQV 243 (282)
Q Consensus 171 n~~~~---~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~adnPG~----CHi~~ 243 (282)
|.+.. ....||||||||+||||++|.|.|++..+...+|+.||++|||+.|+++||++|||+|||||+ |||+|
T Consensus 455 n~~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDNPG~Wl~HCHi~~ 534 (574)
T PLN02191 455 NANVLKGVVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDNPGVWFFHCHIEP 534 (574)
T ss_pred CCCcccCCCCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCCCEEEEEecCchh
Confidence 65311 367999999999999999999999875445679999999999999999999999999999999 99999
Q ss_pred CCCCCCccCCccceeEEEEeCCccccccCCCCCCCCCCC
Q 037454 244 PPPASTHKLGIEDGMDCIVFDGKLQNQKLLPPPADLPKC 282 (282)
Q Consensus 244 H~~~~~~~~Gm~~~~~~~v~~~~~~~~~~~~~p~~~~~c 282 (282)
|+ ++|| +++|++.+++ ++++|.+++.|
T Consensus 535 Hl-----~~Gm--~~~~~e~~~~-----~~~~p~~~~~C 561 (574)
T PLN02191 535 HL-----HMGM--GVVFAEGLNR-----IGKIPDEALGC 561 (574)
T ss_pred hh-----hcCC--EEEEecChhh-----ccCCCcchhhh
Confidence 99 9999 9999876543 45567788888
No 11
>PLN02604 oxidoreductase
Probab=100.00 E-value=4e-49 Score=388.48 Aligned_cols=270 Identities=20% Similarity=0.271 Sum_probs=188.7
Q ss_pred CEEeEEEEcCCC----------CcEEEeccCCCCHHHHHHHHHhCC-CCCCCCCceEEcCCCCCcc--------------
Q 037454 1 MVLSLIILLKPG----------IPIMFGECFNADPEAIISQALQRG-GGPNVSDANTTNGLPGRSI-------------- 55 (282)
Q Consensus 1 l~GplIV~p~~~----------~~l~l~Dw~~~~~~~~~~~~~~~g-~~~~~~d~~LING~~~~~~-------------- 55 (282)
|+|+|||+++++ .+|+|+||+|++..++........ ....++|++||||+++..+
T Consensus 136 l~G~liV~~~~~~~~p~~~d~d~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~G~~~~~~~~~~~~~~~~~~ 215 (566)
T PLN02604 136 LYGSIRVSLPRGKSEPFSYDYDRSIILTDWYHKSTYEQALGLSSIPFDWVGEPQSLLIQGKGRYNCSLVSSPYLKAGVCN 215 (566)
T ss_pred CeEEEEEEecCCCCCccccCcceEEEeeccccCCHHHHHHhhccCCCccCCCCCceEEcCCCCCCCccccCccccccccc
Confidence 799999995421 799999999999877655443211 1124789999999874210
Q ss_pred ------------------------cc--------cCCCceEEEEEeCCceeeeeEeCEEEecCCCeeEEEEe-CC-C-Cc
Q 037454 56 ------------------------NC--------SACLGRVTIIEADAVHVKPFETKTLHSFPPDRQQKFLS-KP-N-AT 100 (282)
Q Consensus 56 ------------------------nc--------s~~~H~~~VIa~DG~~v~P~~~~~i~l~~GqR~dvlv~-~~-~-g~ 100 (282)
|. +.++|+|+|||+||.+++|+++++|.|++||||||+|+ ++ + ++
T Consensus 216 ~~~~~~~~~~~~v~~g~~~RlRlINa~~~~~~~~sidgH~~~VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~ 295 (566)
T PLN02604 216 ATNPECSPYVLTVVPGKTYRLRISSLTALSALSFQIEGHNMTVVEADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRN 295 (566)
T ss_pred cCCCCCCceEEEecCCCEEEEEEEeccccceEEEEECCCEEEEEEeCCEecccceeeeEEEccCCeEEEEEECCCCCCCC
Confidence 11 12469999999999999999999999999999999999 87 5 48
Q ss_pred eEEEEeeC--------ceeEEecCCCCC----CCC----CCCCCCCc----------------------ccccc--ccc-
Q 037454 101 FFTTARPY--------VTGQGTSDNSTK----PIL----PARKDTSF----------------------PTSFT--NKL- 139 (282)
Q Consensus 101 y~i~~~~~--------~~~~~~y~~~~~----p~~----p~~~~~~~----------------------~~~~~--~~~- 139 (282)
||||+... ..|+++|++... |.. +.+++... ...+. ...
T Consensus 296 y~ira~~~~~~~~~~~~~aIL~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 375 (566)
T PLN02604 296 YWVTTSVVSRNNTTPPGLAIFNYYPNHPRRSPPTVPPSGPLWNDVEPRLNQSLAIKARHGYIHPPPLTSDRVIVLLNTQN 375 (566)
T ss_pred EEEEEecccCCCCCcceeEEEEECCCCCCCCCCCCCCCCCcccccchhhcchhcccccccCcCCCCCCCCeEEEEecccc
Confidence 99997532 368899975321 111 11221100 00000 000
Q ss_pred -------ccccccCCC-CCCCeeeec-------------------------------CC-----cccCCCCcE----EEc
Q 037454 140 -------GTLAISHVP-VNAPKTLTC-------------------------------NS-----SPEGPNGTM----FQN 171 (282)
Q Consensus 140 -------~~~~~~~~~-~~~p~~~~~-------------------------------n~-----~~~~~~g~~----~~n 171 (282)
-++++..|. +..|.+... +. .+..+.|++ |+|
T Consensus 376 ~~~~~~~w~in~~~~~~p~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n 455 (566)
T PLN02604 376 EVNGYRRWSVNNVSFNLPHTPYLIALKENLTGAFDQTPPPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQN 455 (566)
T ss_pred ccCCeEEEEECcccCCCCCCchhHhhhhcCCCcccCCCCCcccccccccccCCccccccccCceEEEccCCCeEEEEEEC
Confidence 011222221 122221100 00 012334553 556
Q ss_pred CCCC---CCCCCceeeecCceEEEEecCCcCCCCCCCCCCCCCCCCcceEEEcCCCcEEEEEEEcCCccc----cccccC
Q 037454 172 RSIL---RAESHPLQLHGFNFFVVEQGSGNFDPNKHPSKFNLFYPIERNTEWCALGGWVAPRFLAHSPVV----CMVQVP 244 (282)
Q Consensus 172 ~~~~---~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~adnPG~----CHi~~H 244 (282)
.... ....||||||||+||||++|.|.|++..+...+|+.||++|||++|+++||++|||+|||||+ |||+||
T Consensus 456 ~~~~~~~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDNPG~WlfHCHI~~H 535 (566)
T PLN02604 456 ANTMNANNSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRADNPGVWAFHCHIESH 535 (566)
T ss_pred CccccCCCCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECCCCeEeeEeecchhH
Confidence 5311 357899999999999999999999876656689999999999999999999999999999999 999999
Q ss_pred CCCCCccCCccceeEEEEeCCccccccCCCCCCCCCCC
Q 037454 245 PPASTHKLGIEDGMDCIVFDGKLQNQKLLPPPADLPKC 282 (282)
Q Consensus 245 ~~~~~~~~Gm~~~~~~~v~~~~~~~~~~~~~p~~~~~c 282 (282)
+ ++|| +++|++.++ +++++|.++++|
T Consensus 536 l-----~~GM--~~v~~e~~~-----~~~~~p~~~~~C 561 (566)
T PLN02604 536 F-----FMGM--GVVFEEGIE-----RVGKLPSSIMGC 561 (566)
T ss_pred h-----hcCC--EEEEeeChh-----hccCCCCCcCcc
Confidence 9 9999 999987543 577888999999
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=1.5e-46 Score=368.29 Aligned_cols=258 Identities=19% Similarity=0.230 Sum_probs=180.0
Q ss_pred CEEeEEEEcCC--------CCcEEEeccCCCCHHHHHHHHHhCCC-CCCCCCceEEcCCCCCcc----------------
Q 037454 1 MVLSLIILLKP--------GIPIMFGECFNADPEAIISQALQRGG-GPNVSDANTTNGLPGRSI---------------- 55 (282)
Q Consensus 1 l~GplIV~p~~--------~~~l~l~Dw~~~~~~~~~~~~~~~g~-~~~~~d~~LING~~~~~~---------------- 55 (282)
|+|+|||++++ +++|+|+||||+...++...+..... ...++|++||||++.+..
T Consensus 121 l~G~lIV~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~~ 200 (538)
T TIGR03390 121 AFGPLIVEDCEPPPYKYDDERILLVSDFFSATDEEIEQGLLSTPFTWSGETEAVLLNGKSGNKSFYAQINPSGSCMLPVI 200 (538)
T ss_pred ceeEEEEccCCccCCCccCcEEEEEeCCCCCCHHHHHhhhhccCCccCCCCceEEECCccccccccccccCCCCCcceEE
Confidence 79999999542 18999999999998877655543221 235679999999963211
Q ss_pred -------------ccc--------CCCce-EEEEEeCCceeeeeEeCEEEecCCCeeEEEEe-CCC--------CceEEE
Q 037454 56 -------------NCS--------ACLGR-VTIIEADAVHVKPFETKTLHSFPPDRQQKFLS-KPN--------ATFFTT 104 (282)
Q Consensus 56 -------------ncs--------~~~H~-~~VIa~DG~~v~P~~~~~i~l~~GqR~dvlv~-~~~--------g~y~i~ 104 (282)
|.+ .++|+ |+|||+||++++|++++.|.|++||||||+|+ +++ ++||||
T Consensus 201 ~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~DG~~~~P~~v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir 280 (538)
T TIGR03390 201 DVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADGSYTKPAKIDHLQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQ 280 (538)
T ss_pred EECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEeCCCCCCceEeCeEEEccCCEEEEEEECCCccccccCCCCcEEEE
Confidence 211 25699 99999999999999999999999999999999 862 799999
Q ss_pred EeeC-------ceeEEecCCCC---CCCCC---CC---------CCCC-------------c----ccccccccc-----
Q 037454 105 ARPY-------VTGQGTSDNST---KPILP---AR---------KDTS-------------F----PTSFTNKLG----- 140 (282)
Q Consensus 105 ~~~~-------~~~~~~y~~~~---~p~~p---~~---------~~~~-------------~----~~~~~~~~~----- 140 (282)
+... ..|+|+|.+.. .|..| .. .+.. . ...+...+.
T Consensus 281 ~~~~~~~~~~~~~aiL~Y~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~pl~~~~~~~~~~~~~~d~~~~l~~~~~~~~ 360 (538)
T TIGR03390 281 FETRDRPKVYRGYAVLRYRSDKASKLPSVPETPPLPLPNSTYDWLEYELEPLSEENNQDFPTLDEVTRRVVIDAHQNVDP 360 (538)
T ss_pred EeecCCCCcceEEEEEEeCCCCCCCCCCCCCCCCCCccCcchhhhheeeEecCccccCCCCCCCcCceEEEEEccccccc
Confidence 8743 36899996532 12111 10 0000 0 000000000
Q ss_pred -------cccccCCC---CCCCeeeec--CC---------------------cccCCCCcE----EEcCCCC-----CCC
Q 037454 141 -------TLAISHVP---VNAPKTLTC--NS---------------------SPEGPNGTM----FQNRSIL-----RAE 178 (282)
Q Consensus 141 -------~~~~~~~~---~~~p~~~~~--n~---------------------~~~~~~g~~----~~n~~~~-----~~~ 178 (282)
.+++..|. +..|++... +. .+..++|++ |+|.... ...
T Consensus 361 ~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~ 440 (538)
T TIGR03390 361 LNGRVAWLQNGLSWTESVRQTPYLVDIYENGLPATPNYTAALANYGFDPETRAFPAKVGEVLEIVWQNTGSYTGPNGGVD 440 (538)
T ss_pred cCCeEEEEECCcccCCCCCCCchHHHHhcCCCCcCCCcccccccCCcCcCceEEEcCCCCEEEEEEECCcccccCCCCCC
Confidence 12222232 223333210 00 112344543 6665211 258
Q ss_pred CCceeeecCceEEEEecCCcCCCCCCCCCCCCCCCCcceEEEcC----------CCcEEEEEEEcCCccc----cccccC
Q 037454 179 SHPLQLHGFNFFVVEQGSGNFDPNKHPSKFNLFYPIERNTEWCA----------LGGWVAPRFLAHSPVV----CMVQVP 244 (282)
Q Consensus 179 ~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~~n~~~p~~rDTv~v~----------~~g~~~irf~adnPG~----CHi~~H 244 (282)
.||||||||+||||++|.|.|++..+...+|+.||++|||+.|+ ++||++|||+|||||+ |||+||
T Consensus 441 ~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~~~~~~~~~~~~~ir~~~dNPG~W~~HCHi~~H 520 (538)
T TIGR03390 441 THPFHAHGRHFYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAVKVVPGAPAGWRAWRIRVTNPGVWMMHCHILQH 520 (538)
T ss_pred CCCeeecCCcEEEEcccccccCCccChhhhccCCCCeecceeeccccccccccCCCceEEEEEEcCCCeeEEEeccchhh
Confidence 99999999999999999999987554557899999999999996 7899999999999999 999999
Q ss_pred CCCCCccCCccceeEEEEeCC
Q 037454 245 PPASTHKLGIEDGMDCIVFDG 265 (282)
Q Consensus 245 ~~~~~~~~Gm~~~~~~~v~~~ 265 (282)
+ .+|| +++|.|.+.
T Consensus 521 ~-----~~Gm--~~~~~~~~~ 534 (538)
T TIGR03390 521 M-----VMGM--QTVWVFGDA 534 (538)
T ss_pred h-----hccc--eEEEEeCCh
Confidence 9 9999 999998543
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=2.4e-32 Score=269.07 Aligned_cols=237 Identities=21% Similarity=0.219 Sum_probs=156.7
Q ss_pred CEEeEEEEcCCC--------CcEEEeccCCCCHHHHHHHHHh---------------------CCC---------C----
Q 037454 1 MVLSLIILLKPG--------IPIMFGECFNADPEAIISQALQ---------------------RGG---------G---- 38 (282)
Q Consensus 1 l~GplIV~p~~~--------~~l~l~Dw~~~~~~~~~~~~~~---------------------~g~---------~---- 38 (282)
|+|+|||+|++. ++|+|+||++.+..+++..+.. .|. .
T Consensus 154 L~G~lIV~~~~~~p~~~D~E~vl~L~Dw~~~~p~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 233 (587)
T TIGR01480 154 LYGPLIIDPAEPDPVRADREHVVLLSDWTDLDPAALFRKLKVMAGHDNYYKRTVADFFRDVRNDGLKQTLADRKMWGQMR 233 (587)
T ss_pred ceEEEEECCCccccCCCCceEEEEeeecccCCHHHHHHhhhcccccccccccchhhhhhhhccccccccccccccccccc
Confidence 799999997521 8999999999887776543321 010 0
Q ss_pred --C-------CCCCceEEcCCCCCc----------------cccc--------CCCceEEEEEeCCceeeeeEeCEEEec
Q 037454 39 --P-------NVSDANTTNGLPGRS----------------INCS--------ACLGRVTIIEADAVHVKPFETKTLHSF 85 (282)
Q Consensus 39 --~-------~~~d~~LING~~~~~----------------~ncs--------~~~H~~~VIa~DG~~v~P~~~~~i~l~ 85 (282)
+ .....+||||+..+. +|.+ .++|+|+|||+||++|+|++++.|.|+
T Consensus 234 ~~~~d~~dv~G~~~~~LiNG~~~~~~~~~~v~~G~rvRLR~INas~~~~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~ 313 (587)
T TIGR01480 234 MTPTDLADVNGSTYTYLMNGTTPAGNWTGLFRPGEKVRLRFINGSAMTYFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIA 313 (587)
T ss_pred cCCcccccccCccceEEEcCccCCCCceEEECCCCEEEEEEEecCCCceEEEEECCCEEEEEEcCCcCcCceEeCeEEEc
Confidence 0 001248899997431 2433 367999999999999999999999999
Q ss_pred CCCeeEEEEe-CCCCceEEEEeeCc-----eeEEecCCC-CC--CCCCC-----CCCCCc-c---------ccc------
Q 037454 86 PPDRQQKFLS-KPNATFFTTARPYV-----TGQGTSDNS-TK--PILPA-----RKDTSF-P---------TSF------ 135 (282)
Q Consensus 86 ~GqR~dvlv~-~~~g~y~i~~~~~~-----~~~~~y~~~-~~--p~~p~-----~~~~~~-~---------~~~------ 135 (282)
+||||||+|+ ++.|.|+|.+.... .+.|++.+. .. |.++. ..+... . ..+
T Consensus 314 pGeRyDVlV~~~~~g~~~i~a~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 393 (587)
T TIGR01480 314 PAETFDVIVEPTGDDAFTIFAQDSDRTGYARGTLAVRLGLTAPVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGM 393 (587)
T ss_pred CcceeEEEEecCCCceEEEEEEecCCCceEEEEEecCCCCCCCCCCCCCccccChhhcccccccccccccccccCccccc
Confidence 9999999999 77789999986642 456666542 11 22211 001000 0 000
Q ss_pred --------------------------------------------------------------ccccccccccCCCCCCCe
Q 037454 136 --------------------------------------------------------------TNKLGTLAISHVPVNAPK 153 (282)
Q Consensus 136 --------------------------------------------------------------~~~~~~~~~~~~~~~~p~ 153 (282)
..+|+++... .+.+.|-
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~-~~~~~p~ 472 (587)
T TIGR01480 394 DMSMRAQSNAPMDHSQMAMDASPKHPASEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSLFPP-PDGRAPG 472 (587)
T ss_pred CccccccccccCccccccccccccCcccccCCccccccccCcccccCCCCcccccCCcceeehhhccccccc-cCcCCCC
Confidence 0000000000 0111121
Q ss_pred e-----e-------ec--CC-------cccCCCCcE----EEcCCCCCCCCCceeeecCceEEEEecCCcCCCCCCCCCC
Q 037454 154 T-----L-------TC--NS-------SPEGPNGTM----FQNRSILRAESHPLQLHGFNFFVVEQGSGNFDPNKHPSKF 208 (282)
Q Consensus 154 ~-----~-------~~--n~-------~~~~~~g~~----~~n~~~~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~~ 208 (282)
. + .| |. .+.++.|++ |.|. +.+.||||||||.|+++.. .|.+
T Consensus 473 r~~~~~L~g~m~~~~wtiNG~~~~~~~pl~v~~Gervri~l~N~---t~~~HpmHlHG~~f~v~~~-~G~~--------- 539 (587)
T TIGR01480 473 REIELHLTGNMERFAWSFDGEAFGLKTPLRFNYGERLRVVLVND---TMMAHPIHLHGMWSELEDG-QGEF--------- 539 (587)
T ss_pred ceEEEEEcCCCceeEEEECCccCCCCCceEecCCCEEEEEEECC---CCCCcceeEcCceeeeecC-CCcc---------
Confidence 0 0 01 21 123456664 6675 5899999999999999864 2322
Q ss_pred CCCCCCcceEEEcCCCcEEEEEEEcCCccc----cccccCCCCCCccCCccceeEEEE
Q 037454 209 NLFYPIERNTEWCALGGWVAPRFLAHSPVV----CMVQVPPPASTHKLGIEDGMDCIV 262 (282)
Q Consensus 209 n~~~p~~rDTv~v~~~g~~~irf~adnPG~----CHi~~H~~~~~~~~Gm~~~~~~~v 262 (282)
++++||+.|+|++++.++|.|||||. ||++.|+ +.|| +..|.|
T Consensus 540 ----~~~~dTv~V~Pg~t~~~~f~ad~pG~w~~HCH~l~H~-----~~GM--~~~~~v 586 (587)
T TIGR01480 540 ----QVRKHTVDVPPGGKRSFRVTADALGRWAYHCHMLLHM-----EAGM--FREVTV 586 (587)
T ss_pred ----cccCCceeeCCCCEEEEEEECCCCeEEEEcCCCHHHH-----hCcC--cEEEEe
Confidence 45889999999999999999999999 9999999 9999 988876
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=99.98 E-value=2.1e-31 Score=260.04 Aligned_cols=236 Identities=15% Similarity=0.103 Sum_probs=148.6
Q ss_pred CEEeEEEEcCC-------------CCcEEEeccCCCCHHHHHHHHH-hCCCCCCCCCceEEcCCCCCcc-----------
Q 037454 1 MVLSLIILLKP-------------GIPIMFGECFNADPEAIISQAL-QRGGGPNVSDANTTNGLPGRSI----------- 55 (282)
Q Consensus 1 l~GplIV~p~~-------------~~~l~l~Dw~~~~~~~~~~~~~-~~g~~~~~~d~~LING~~~~~~----------- 55 (282)
|+|+|||++++ +++|+|+||+++...++..... ........+|.+||||+..+.+
T Consensus 157 L~G~lIV~d~~~~~~~lp~~~~~~d~~lvlqD~~~~~~g~~~~~~~~~~~~~g~~gd~~lVNG~~~p~~~v~~~~~RlRl 236 (523)
T PRK10965 157 LAGLVLIEDDESLKLGLPKQWGVDDIPVILQDKRFSADGQIDYQLDVMTAAVGWFGDTLLTNGAIYPQHAAPRGWLRLRL 236 (523)
T ss_pred CeEEEEEcCccccccCCcccCCCceeeEEEEeeeeCCCCceeccccccccccCccCCeEEECCcccceeecCCCEEEEEE
Confidence 79999999542 1789999999876544321110 0001124679999999987632
Q ss_pred -ccc---------CCCceEEEEEeCCcee-eeeEeCEEEecCCCeeEEEEe-CCCCceEEEEeeCce------------e
Q 037454 56 -NCS---------ACLGRVTIIEADAVHV-KPFETKTLHSFPPDRQQKFLS-KPNATFFTTARPYVT------------G 111 (282)
Q Consensus 56 -ncs---------~~~H~~~VIa~DG~~v-~P~~~~~i~l~~GqR~dvlv~-~~~g~y~i~~~~~~~------------~ 111 (282)
|.+ .++|+|+|||+||+++ +|+++++|.|+|||||||+|+ ++.++|+++..++.. .
T Consensus 237 iNas~~r~~~l~~~dg~~~~vIa~DG~~l~~P~~v~~l~lapGeR~dvlv~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~ 316 (523)
T PRK10965 237 LNGCNARSLNLATSDGRPLYVIASDGGLLAEPVKVSELPILMGERFEVLVDTSDGKAFDLVTLPVSQMGMALAPFDKPLP 316 (523)
T ss_pred EeccCCceEEEEEcCCceEEEEEeCCCcccCccEeCeEEECccceEEEEEEcCCCceEEEEEecccCcccccccCCCcee
Confidence 332 2579999999999996 599999999999999999999 777789888764321 1
Q ss_pred EEecC--CCCC----CC----CCCCCC--CCcccccccccc---------------------------------------
Q 037454 112 QGTSD--NSTK----PI----LPARKD--TSFPTSFTNKLG--------------------------------------- 140 (282)
Q Consensus 112 ~~~y~--~~~~----p~----~p~~~~--~~~~~~~~~~~~--------------------------------------- 140 (282)
++++. +... |. ++.... ....+.+...+.
T Consensus 317 ~~~~~~~~~~~~~~~P~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (523)
T PRK10965 317 VLRIQPLLISASGTLPDSLASLPALPSLEGLTVRRLQLSMDPRLDMMGMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDH 396 (523)
T ss_pred EEEEeccCcCCCCcCChhhccCCCCCcccccceeEEEEeeccccchhhhhhccccccccccccccccccccccccccccc
Confidence 23332 1110 11 111110 000001100000
Q ss_pred ------------------cccccCCCCCCCeeeecCCcccCCCCcE----EEcCCCCCCCCCceeeecCceEEEEecCCc
Q 037454 141 ------------------TLAISHVPVNAPKTLTCNSSPEGPNGTM----FQNRSILRAESHPLQLHGFNFFVVEQGSGN 198 (282)
Q Consensus 141 ------------------~~~~~~~~~~~p~~~~~n~~~~~~~g~~----~~n~~~~~~~~HP~HLHG~~F~Vl~~g~G~ 198 (282)
++|+..|....| .++.+.|++ |.|.+ ..+.|||||||++|+||++. |.
T Consensus 397 ~~~~~~~~~~~~~~~~~~~ING~~~~~~~~-------~~~~~~G~~e~w~i~N~~--~~~~Hp~HlHg~~F~Vl~~~-g~ 466 (523)
T PRK10965 397 MNHGAADAGPAFDFHHANKINGKAFDMNKP-------MFAAKKGQYERWVISGVG--DMMLHPFHIHGTQFRILSEN-GK 466 (523)
T ss_pred cccccccccccccccccccCCCeECCCCCc-------ceecCCCCEEEEEEEeCC--CCCccCeEEeCcEEEEEEec-CC
Confidence 112221211111 123467774 66763 23689999999999999984 32
Q ss_pred CCCCCCCCCCCCCCCCcceEEEcCCCcEEEEEEEc----CCccc----cccccCCCCCCccCCccceeEEEE
Q 037454 199 FDPNKHPSKFNLFYPIERNTEWCALGGWVAPRFLA----HSPVV----CMVQVPPPASTHKLGIEDGMDCIV 262 (282)
Q Consensus 199 ~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~a----dnPG~----CHi~~H~~~~~~~~Gm~~~~~~~v 262 (282)
-. ....+.|||||.|++ +.+.|+++. ||+|. |||++|+ +.|| |.+|.|
T Consensus 467 ~~--------~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL~He-----d~GM--M~~~~V 522 (523)
T PRK10965 467 PP--------AAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLLEHE-----DTGM--MLGFTV 522 (523)
T ss_pred CC--------CccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCchhhh-----ccCc--cceeEe
Confidence 11 113467999999987 667666555 45556 9999999 9999 999987
No 15
>PRK10883 FtsI repressor; Provisional
Probab=99.98 E-value=3.9e-31 Score=255.64 Aligned_cols=232 Identities=16% Similarity=0.104 Sum_probs=147.5
Q ss_pred CEEeEEEEcCC-------------CCcEEEeccCCCCHHHHHHHHHhCCCCCCCCCceEEcCCCCCcc------------
Q 037454 1 MVLSLIILLKP-------------GIPIMFGECFNADPEAIISQALQRGGGPNVSDANTTNGLPGRSI------------ 55 (282)
Q Consensus 1 l~GplIV~p~~-------------~~~l~l~Dw~~~~~~~~~~~~~~~g~~~~~~d~~LING~~~~~~------------ 55 (282)
|+|+|||+++. +++|+|+||+++....... .........+|.+||||+..+.+
T Consensus 157 L~G~lII~d~~~~~~~~p~~~~~~d~~l~l~D~~~~~~g~~~~--~~~~~~g~~gd~~lvNG~~~p~~~v~~~~~RlRli 234 (471)
T PRK10883 157 LAGMWLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEY--NEPGSGGFVGDTLLVNGVQSPYVEVSRGWVRLRLL 234 (471)
T ss_pred CeEEEEEeCCcccccCCcccCCCcceeEEeeeeeeccCCCccc--cccccCCccCCeeEECCccCCeEEecCCEEEEEEE
Confidence 78999999431 1889999999876433211 11111124689999999987642
Q ss_pred ccc--------C-CCceEEEEEeCCcee-eeeEeCEEEecCCCeeEEEEe-CCCCceEEEEeeCc---------------
Q 037454 56 NCS--------A-CLGRVTIIEADAVHV-KPFETKTLHSFPPDRQQKFLS-KPNATFFTTARPYV--------------- 109 (282)
Q Consensus 56 ncs--------~-~~H~~~VIa~DG~~v-~P~~~~~i~l~~GqR~dvlv~-~~~g~y~i~~~~~~--------------- 109 (282)
|.+ . ++|+|+|||+||+++ +|+++++|.|+|||||||+|+ ++.+.+.+.+....
T Consensus 235 Nas~~~~~~l~l~d~~~~~vIa~DGg~~~~P~~~~~l~l~pGeR~dvlVd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 314 (471)
T PRK10883 235 NASNARRYQLQMSDGRPLHVIAGDQGFLPAPVSVKQLSLAPGERREILVDMSNGDEVSITAGEAAGIVDRLRGFFEPSSI 314 (471)
T ss_pred EccCCceEEEEEcCCCeEEEEEeCCCcccCCcEeCeEEECCCCeEEEEEECCCCceEEEECCCccccccccccccCCccc
Confidence 322 2 579999999997775 699999999999999999999 77556666552110
Q ss_pred ---eeEEecCCCC--C--C-CCCCC----C-C-CCc--cccc--ccccccccccCCCCCCCeeeecCCcccCCCCcE---
Q 037454 110 ---TGQGTSDNST--K--P-ILPAR----K-D-TSF--PTSF--TNKLGTLAISHVPVNAPKTLTCNSSPEGPNGTM--- 168 (282)
Q Consensus 110 ---~~~~~y~~~~--~--p-~~p~~----~-~-~~~--~~~~--~~~~~~~~~~~~~~~~p~~~~~n~~~~~~~g~~--- 168 (282)
..+++..... . + .+|.. . . ... ...+ ......+|+..|....+ .+..+.|++
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~l~~~~~~INg~~~~~~~~-------~~~~~~g~~e~W 387 (471)
T PRK10883 315 LVSTLVLTLRPTGLLPLVTDNLPMRLLPDEIMEGSPIRSREISLGDDLPGINGALWDMNRI-------DVTAQQGTWERW 387 (471)
T ss_pred cccceeEEEEccccccCCCCcCChhhcCCCCCCCCCcceEEEEecCCcCccCCcccCCCcc-------eeecCCCCEEEE
Confidence 0011211100 0 0 01110 0 0 000 0111 11112355655543221 112356764
Q ss_pred -EEcCCCCCCCCCceeeecCceEEEEecCCcCCCCCCCCCCCCCCCCcceEEEcCCCcEEEEEEEcCCcc------c--c
Q 037454 169 -FQNRSILRAESHPLQLHGFNFFVVEQGSGNFDPNKHPSKFNLFYPIERNTEWCALGGWVAPRFLAHSPV------V--C 239 (282)
Q Consensus 169 -~~n~~~~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~adnPG------~--C 239 (282)
+.| .+.||||||||.||||+++..... ..+..|||||+|+ +.+.|++++|+++ + |
T Consensus 388 ~~~n-----~~~HP~HlHg~~FqVl~~~G~~~~---------~~~~gwkDTV~v~--~~v~i~~~f~~~~~~~~~~m~HC 451 (471)
T PRK10883 388 TVRA-----DMPQAFHIEGVMFLIRNVNGAMPF---------PEDRGWKDTVWVD--GQVELLVYFGQPSWAHFPFLFYS 451 (471)
T ss_pred EEEC-----CCCcCEeECCccEEEEEecCCCCC---------ccccCcCcEEEcC--CeEEEEEEecCCCCCCCcEEeec
Confidence 434 368999999999999999432111 1224699999996 4699999999988 3 9
Q ss_pred ccccCCCCCCccCCccceeEEEEeC
Q 037454 240 MVQVPPPASTHKLGIEDGMDCIVFD 264 (282)
Q Consensus 240 Hi~~H~~~~~~~~Gm~~~~~~~v~~ 264 (282)
||++|+ +.|| |.+|.|.+
T Consensus 452 HiLeHe-----D~GM--M~~~~V~~ 469 (471)
T PRK10883 452 QTLEMA-----DRGS--IGQLLVNP 469 (471)
T ss_pred cccccc-----ccCC--ccCeEEec
Confidence 999999 9999 99999854
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.94 E-value=6.7e-26 Score=218.72 Aligned_cols=233 Identities=20% Similarity=0.164 Sum_probs=150.9
Q ss_pred CEEeEEEEcCC-C-------CcEEEeccCCCCHHHHHHHHHhCCCCCCCCCceEEcCCCCCc------------cc----
Q 037454 1 MVLSLIILLKP-G-------IPIMFGECFNADPEAIISQALQRGGGPNVSDANTTNGLPGRS------------IN---- 56 (282)
Q Consensus 1 l~GplIV~p~~-~-------~~l~l~Dw~~~~~~~~~~~~~~~g~~~~~~d~~LING~~~~~------------~n---- 56 (282)
|+|++||+++. + .+|++++|+........... .......++..+|||+..+. +|
T Consensus 142 l~G~~II~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~vnG~~~p~~~~~~g~~rlRl~n~~~~ 219 (451)
T COG2132 142 LAGALIIEDENSEPLGVDDEPVILQDDWLDEDGTDLYQEG--PAMGGFPGDTLLVNGAILPFKAVPGGVVRLRLLNAGNA 219 (451)
T ss_pred cceeEEEeCCCCCCCCCCceEEEEEeeeecCCCCccccCC--ccccCCCCCeEEECCCccceeecCCCeEEEEEEecCCc
Confidence 68999999652 1 78888899887654443221 11122357999999955432 12
Q ss_pred ----ccCCCceEEEEEeCCceeeeeEeCEEEecCCCeeEEEEe-CCCCceEEEEeeCc---e-eEEecCCC-CCCC----
Q 037454 57 ----CSACLGRVTIIEADAVHVKPFETKTLHSFPPDRQQKFLS-KPNATFFTTARPYV---T-GQGTSDNS-TKPI---- 122 (282)
Q Consensus 57 ----cs~~~H~~~VIa~DG~~v~P~~~~~i~l~~GqR~dvlv~-~~~g~y~i~~~~~~---~-~~~~y~~~-~~p~---- 122 (282)
+...+++|+||++||.+++|.+++.+.|+|||||||+|+ ++.+.|.+.+.... . ...+.... ..+.
T Consensus 220 ~~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p~er~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (451)
T COG2132 220 RTYHLALGGGPLTVIAVDGGPLPPVSVDELYLAPGERYEVLVDMNDGGAVTLTALGEDMPDTLKGFRAPNPILTPSYPVL 299 (451)
T ss_pred eEEEEEecCceEEEEEeCCcCcCceeeeeEEecCcceEEEEEEcCCCCeEEEEeccccCCceeeeeeccccccccccccc
Confidence 223479999999999999999999999999999999999 77677777765521 1 11111000 0000
Q ss_pred -----CCCCC--CCCccc---------------ccc--c----ccccccccCCCC-CCCeeeecCCcccCCCCcE----E
Q 037454 123 -----LPARK--DTSFPT---------------SFT--N----KLGTLAISHVPV-NAPKTLTCNSSPEGPNGTM----F 169 (282)
Q Consensus 123 -----~p~~~--~~~~~~---------------~~~--~----~~~~~~~~~~~~-~~p~~~~~n~~~~~~~g~~----~ 169 (282)
.+... +..... .+. . ..-++++..|+. .. ++..+.|++ +
T Consensus 300 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~--------~~~~~~G~~~~~~i 371 (451)
T COG2132 300 NGRVGAPTGDMADHAPVGLLVTILVEPGPNRDTDFHLIGGIGGYVWAINGKAFDDNRV--------TLIAKAGTRERWVL 371 (451)
T ss_pred cccccCCCcchhhccccccchhhcCCCcccccccchhhcccccccccccCccCCCCcC--------ceeecCCCEEEEEE
Confidence 00000 000000 000 0 000111111111 11 223456664 5
Q ss_pred EcCCCCCCCCCceeeecCceEEEEecCCcCCCCCCCCCCCCCCCCcceEEEcCCCcEEEEEEEcCCccc----cccccCC
Q 037454 170 QNRSILRAESHPLQLHGFNFFVVEQGSGNFDPNKHPSKFNLFYPIERNTEWCALGGWVAPRFLAHSPVV----CMVQVPP 245 (282)
Q Consensus 170 ~n~~~~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~adnPG~----CHi~~H~ 245 (282)
.|. +.+.|||||||+.|+|++.+ ... ....+.||||+.+.+++.++++|.+|+||. ||+++|+
T Consensus 372 ~n~---~~~~HP~HlHg~~F~v~~~~-~~~---------~~~~~~~kDTv~v~~~~~~~v~~~a~~~g~~~~HCH~l~H~ 438 (451)
T COG2132 372 TND---TPMPHPFHLHGHFFQVLSGD-APA---------PGAAPGWKDTVLVAPGERLLVRFDADYPGPWMFHCHILEHE 438 (451)
T ss_pred ECC---CCCccCeEEcCceEEEEecC-CCc---------ccccCccceEEEeCCCeEEEEEEeCCCCCceEEeccchhHh
Confidence 555 46999999999999999986 111 124578999999999999999999999999 9999999
Q ss_pred CCCCccCCccceeEEEEe
Q 037454 246 PASTHKLGIEDGMDCIVF 263 (282)
Q Consensus 246 ~~~~~~~Gm~~~~~~~v~ 263 (282)
+.|| |..+.|.
T Consensus 439 -----~~Gm--~~~~~v~ 449 (451)
T COG2132 439 -----DNGM--MGQFGVV 449 (451)
T ss_pred -----hcCC--eeEEEec
Confidence 9999 9898774
No 17
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.88 E-value=1.7e-23 Score=170.42 Aligned_cols=92 Identities=32% Similarity=0.524 Sum_probs=77.9
Q ss_pred CCCCcE----EEcCCCCCCCCCceeeecCceEEEEecCCcCCCCCCCCCCCCCCCCcceEEEcCCCcEEEEEEEcCCccc
Q 037454 163 GPNGTM----FQNRSILRAESHPLQLHGFNFFVVEQGSGNFDPNKHPSKFNLFYPIERNTEWCALGGWVAPRFLAHSPVV 238 (282)
Q Consensus 163 ~~~g~~----~~n~~~~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~adnPG~ 238 (282)
.+.|++ ++|. +...||||||||+|+||+++.+.+... ....+++.+|.||||+.|+++||++|||++||||.
T Consensus 38 ~~~g~~v~~~l~N~---~~~~Hp~HlHG~~F~vl~~~~~~~~~~-~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~~~G~ 113 (138)
T PF07731_consen 38 VKNGDVVEIVLQNN---GSMPHPFHLHGHSFQVLGRGGGPWNPD-DTQSYNPENPGWRDTVLVPPGGWVVIRFRADNPGP 113 (138)
T ss_dssp EETTSEEEEEEEEC---TTSSEEEEETTSEEEEEEETTEESTTH-CGGCCCSSSSSEESEEEEETTEEEEEEEEETSTEE
T ss_pred EeCCCEEEEEEECC---CCCccceEEEeeEEEeeecCCcccccc-cccccccccCcccccccccceeEEEEEEEeecceE
Confidence 356764 6675 477999999999999999987765432 34467888999999999999999999999999999
Q ss_pred ----cccccCCCCCCccCCccceeEEEEeCC
Q 037454 239 ----CMVQVPPPASTHKLGIEDGMDCIVFDG 265 (282)
Q Consensus 239 ----CHi~~H~~~~~~~~Gm~~~~~~~v~~~ 265 (282)
|||++|+ +.|| |++|+|.|.
T Consensus 114 w~~HCHi~~H~-----~~GM--~~~~~v~~~ 137 (138)
T PF07731_consen 114 WLFHCHILEHE-----DNGM--MAVFVVGPQ 137 (138)
T ss_dssp EEEEESSHHHH-----HTT---EEEEEECHH
T ss_pred EEEEEchHHHH-----hCCC--eEEEEEcCC
Confidence 9999999 9999 999998653
No 18
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.85 E-value=2.2e-21 Score=162.29 Aligned_cols=106 Identities=23% Similarity=0.314 Sum_probs=84.6
Q ss_pred CcEEEeccCCCCHHHHHHHHHhCCC----CCCCCCceEEcCCCCCcc--------------------------cc-----
Q 037454 13 IPIMFGECFNADPEAIISQALQRGG----GPNVSDANTTNGLPGRSI--------------------------NC----- 57 (282)
Q Consensus 13 ~~l~l~Dw~~~~~~~~~~~~~~~g~----~~~~~d~~LING~~~~~~--------------------------nc----- 57 (282)
++|+|+||||++..++...++..+. .++++|++||||++...+ |.
T Consensus 3 ~~i~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~~~~~ 82 (159)
T PF00394_consen 3 YVIMLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGKGRFDCSSADYTGGEPPVIKVKPGERYRLRLINAGASTS 82 (159)
T ss_dssp GEEEEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTBTCBTTCTTGSTTSTSGEEEEETTTEEEEEEEEESSS-B
T ss_pred EEEEEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCccccccccccccccccceEEEcCCcEEEEEEEeccCCee
Confidence 6899999999998888776654432 367999999999875221 11
Q ss_pred ---cCCCceEEEEEeCCceeeeeEeCEEEecCCCeeEEEEe-CC-CCceEEEEee-----------CceeEEecCCC
Q 037454 58 ---SACLGRVTIIEADAVHVKPFETKTLHSFPPDRQQKFLS-KP-NATFFTTARP-----------YVTGQGTSDNS 118 (282)
Q Consensus 58 ---s~~~H~~~VIa~DG~~v~P~~~~~i~l~~GqR~dvlv~-~~-~g~y~i~~~~-----------~~~~~~~y~~~ 118 (282)
+.++|+|+|||+||.+++|+++++|.|++||||||+|+ ++ +|+|||++.. ...++++|+++
T Consensus 83 ~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~~~ 159 (159)
T PF00394_consen 83 FNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQPPGNYWIRASYQHDSINDPQNGNALAILRYDGA 159 (159)
T ss_dssp EEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECSCSSEEEEEEEESSSSSHSHGGGTTEEEEEETTS
T ss_pred EEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCCCCCeEEEEEecccCCCccCCCcEEEEEEEECCC
Confidence 12569999999999999999999999999999999999 88 9999999941 13688999763
No 19
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.48 E-value=8.1e-14 Score=128.57 Aligned_cols=120 Identities=10% Similarity=0.044 Sum_probs=85.0
Q ss_pred CEEeEEEEcCCC-------CcEEEeccCCCCHHHHHHHHHhCC--CCCCCCCceEEcCCCCC---c-------------c
Q 037454 1 MVLSLIILLKPG-------IPIMFGECFNADPEAIISQALQRG--GGPNVSDANTTNGLPGR---S-------------I 55 (282)
Q Consensus 1 l~GplIV~p~~~-------~~l~l~Dw~~~~~~~~~~~~~~~g--~~~~~~d~~LING~~~~---~-------------~ 55 (282)
|+|+|||+|+++ ++|+++||+++...+....+.... ....+++.+||||+..+ . +
T Consensus 138 l~G~liV~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iNG~~~~~~~~~~v~~G~~~RlRii 217 (311)
T TIGR02376 138 MNGAIMVLPREGLPEYDKEYYIGESDLYTPKDEGEGGAYEDDVAAMRTLTPTHVVFNGAVGALTGDNALTAGVGERVLFV 217 (311)
T ss_pred cceEEEeeccCCCcCcceeEEEeeeeEeccccccccccccchHHHHhcCCCCEEEECCccCCCCCCcccccCCcEEEEEE
Confidence 689999996531 889999999975433111000000 01246799999999421 1 1
Q ss_pred ccc--------CCCceEEEEEeCCceeeeeE--eCEEEecCCCeeEEEEe-CCCCceEEEEeeCc-------eeEEecCC
Q 037454 56 NCS--------ACLGRVTIIEADAVHVKPFE--TKTLHSFPPDRQQKFLS-KPNATFFTTARPYV-------TGQGTSDN 117 (282)
Q Consensus 56 ncs--------~~~H~~~VIa~DG~~v~P~~--~~~i~l~~GqR~dvlv~-~~~g~y~i~~~~~~-------~~~~~y~~ 117 (282)
|.+ ..+|.+++|+.||.++.|.. ++++.|+||||+||+|+ +++|.|++++..+. .++++|.+
T Consensus 218 Na~~~~~~~~~~~g~~~~~v~~DG~~~~~~~~~~~~~~i~PG~R~dv~v~~~~pG~y~~~~~~~~~~~~~g~~~~i~~~g 297 (311)
T TIGR02376 218 HSQPNRDSRPHLIGGHGDYVWVTGKFANPPNRDVETWFIPGGSAAAALYTFEQPGVYAYVDHNLIEAFEKGAAAQVKVEG 297 (311)
T ss_pred cCCCCCCCCCeEecCCceEEEECCcccCCCCCCcceEEECCCceEEEEEEeCCCeEEEEECcHHHHHHhCCCEEEEEECC
Confidence 221 14689999999999999644 89999999999999999 88999999886542 46788876
Q ss_pred CCC
Q 037454 118 STK 120 (282)
Q Consensus 118 ~~~ 120 (282)
...
T Consensus 298 ~~~ 300 (311)
T TIGR02376 298 AWN 300 (311)
T ss_pred CCC
Confidence 543
No 20
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=97.70 E-value=6.4e-05 Score=69.57 Aligned_cols=74 Identities=18% Similarity=0.175 Sum_probs=54.0
Q ss_pred cCCCCcE----EEcCCCCCCCCCceeeecCceEEEEecCCcCCCCCCCCCCCCCCCCcceEEEcCCCcEEEEEEEcCCcc
Q 037454 162 EGPNGTM----FQNRSILRAESHPLQLHGFNFFVVEQGSGNFDPNKHPSKFNLFYPIERNTEWCALGGWVAPRFLAHSPV 237 (282)
Q Consensus 162 ~~~~g~~----~~n~~~~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~adnPG 237 (282)
..+.|+. +.|.. .....|++|+||+. +. ++. + .+..|+||++..++|.+++||
T Consensus 62 rv~~Gd~v~v~v~N~~-~~~~~h~~h~H~~~----~~-----dg~----------~---~~~~I~PG~t~ty~F~~~~~G 118 (311)
T TIGR02376 62 RVHEGDYVELTLINPP-TNTMPHNVDFHAAT----GA-----LGG----------A---ALTQVNPGETATLRFKATRPG 118 (311)
T ss_pred EEECCCEEEEEEEeCC-CCCCceeeeecCCC----cc-----CCC----------C---cceeECCCCeEEEEEEcCCCE
Confidence 3456764 44541 02379999999973 11 110 1 234599999999999999999
Q ss_pred c----cc----cccCCCCCCccCCccceeEEEEeCC
Q 037454 238 V----CM----VQVPPPASTHKLGIEDGMDCIVFDG 265 (282)
Q Consensus 238 ~----CH----i~~H~~~~~~~~Gm~~~~~~~v~~~ 265 (282)
. || +.+|. ..|| ++.|+|.+.
T Consensus 119 ty~YH~H~~~~~~~q~-----~~Gl--~G~liV~~~ 147 (311)
T TIGR02376 119 AFVYHCAPPGMVPWHV-----VSGM--NGAIMVLPR 147 (311)
T ss_pred EEEEEcCCCCchhHHh-----hcCc--ceEEEeecc
Confidence 9 99 57899 9999 999999764
No 21
>PLN02604 oxidoreductase
Probab=97.28 E-value=0.00029 Score=70.31 Aligned_cols=78 Identities=18% Similarity=0.161 Sum_probs=56.2
Q ss_pred CCCcE----EEcCCCCCCCCCceeeecCceEEEEecCCcCCCCCCCCCCCCCCCCcceEEEcCCCcEEEEEEEcCCccc-
Q 037454 164 PNGTM----FQNRSILRAESHPLQLHGFNFFVVEQGSGNFDPNKHPSKFNLFYPIERNTEWCALGGWVAPRFLAHSPVV- 238 (282)
Q Consensus 164 ~~g~~----~~n~~~~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~adnPG~- 238 (282)
+.|+. +.|. +....|+||+||... . +.-.+|+ .+......|+||+....+|.++++|.
T Consensus 60 ~~Gd~v~v~v~N~--l~~~~~~iH~HG~~~--~--~~~~~DG-----------~~~~tq~~i~pg~s~~y~f~~~~~Gt~ 122 (566)
T PLN02604 60 QQGDTVIVELKNS--LLTENVAIHWHGIRQ--I--GTPWFDG-----------TEGVTQCPILPGETFTYEFVVDRPGTY 122 (566)
T ss_pred ECCCEEEEEEEeC--CCCCCCCEEeCCCCC--C--CCccccC-----------CCccccCccCCCCeEEEEEEcCCCEEE
Confidence 46664 4444 235689999999942 1 1100121 11224557899999999999999999
Q ss_pred ---cccccCCCCCCccCCccceeEEEEeCC
Q 037454 239 ---CMVQVPPPASTHKLGIEDGMDCIVFDG 265 (282)
Q Consensus 239 ---CHi~~H~~~~~~~~Gm~~~~~~~v~~~ 265 (282)
||...|. ..|| ++.|+|.+.
T Consensus 123 wyH~H~~~q~-----~~Gl--~G~liV~~~ 145 (566)
T PLN02604 123 LYHAHYGMQR-----EAGL--YGSIRVSLP 145 (566)
T ss_pred EEeeCcHHHH-----hCCC--eEEEEEEec
Confidence 9999999 9999 999999754
No 22
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=95.88 E-value=0.012 Score=58.62 Aligned_cols=78 Identities=18% Similarity=0.122 Sum_probs=54.5
Q ss_pred CCCcE----EEcCCCCCCCCCceeeecCceEEEEecCCcCCCCCCCCCCCCCCCCcceEEEcCCCcEEEEEEEcCCccc-
Q 037454 164 PNGTM----FQNRSILRAESHPLQLHGFNFFVVEQGSGNFDPNKHPSKFNLFYPIERNTEWCALGGWVAPRFLAHSPVV- 238 (282)
Q Consensus 164 ~~g~~----~~n~~~~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~adnPG~- 238 (282)
..|+. +.|. +....+.+|+||... .+....|+ .+.-....|+||+....+|.++++|.
T Consensus 37 ~~Gd~v~v~v~N~--l~~~~t~iHwHGl~~----~~~~~~DG-----------~~~vtq~~I~PG~s~~y~f~~~~~Gt~ 99 (541)
T TIGR03388 37 QAGDTIVVELTNK--LHTEGVVIHWHGIRQ----IGTPWADG-----------TAGVTQCAINPGETFIYNFVVDRPGTY 99 (541)
T ss_pred EcCCEEEEEEEEC--CCCCCccEEecCcCC----cCCcccCC-----------CCccccCCcCCCCEEEEEEEcCCCEEE
Confidence 46664 4443 234678999999952 11110111 11112346789999999999999999
Q ss_pred ---cccccCCCCCCccCCccceeEEEEeCC
Q 037454 239 ---CMVQVPPPASTHKLGIEDGMDCIVFDG 265 (282)
Q Consensus 239 ---CHi~~H~~~~~~~~Gm~~~~~~~v~~~ 265 (282)
||...|. ..|| .+.|+|.+.
T Consensus 100 wyH~H~~~q~-----~~Gl--~G~liV~~~ 122 (541)
T TIGR03388 100 FYHGHYGMQR-----SAGL--YGSLIVDVP 122 (541)
T ss_pred EEEecchHHh-----hccc--eEEEEEecC
Confidence 9999999 9999 999999755
No 23
>PLN02835 oxidoreductase
Probab=95.69 E-value=0.37 Score=48.05 Aligned_cols=176 Identities=16% Similarity=0.116 Sum_probs=95.5
Q ss_pred CceEEcCCC-CCcccccCC------------------CceEEEE---EeCCceeeeeEeCEEEecCCCeeEEEEe-C-CC
Q 037454 43 DANTTNGLP-GRSINCSAC------------------LGRVTII---EADAVHVKPFETKTLHSFPPDRQQKFLS-K-PN 98 (282)
Q Consensus 43 d~~LING~~-~~~~ncs~~------------------~H~~~VI---a~DG~~v~P~~~~~i~l~~GqR~dvlv~-~-~~ 98 (282)
..++|||+- .|.+.+..+ =|-+.+- ..||.+. .+-.|.||+.+.-.++ . +.
T Consensus 49 ~~~~~NG~~PGP~I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~-----tQ~pI~PG~sf~Y~F~~~~q~ 123 (539)
T PLN02835 49 QVILINGQFPGPRLDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLG-----TNCPIPPNSNYTYKFQTKDQI 123 (539)
T ss_pred EEEEECCcCCCCCEEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCcc-----CcCCCCCCCcEEEEEEECCCC
Confidence 568899985 444432211 1666665 3688643 2347999999999888 5 59
Q ss_pred CceEEEEeeCc------ee-EEecCCCCCC-CCCCCCCCCcccccc----c---ccc-cccccCCCC-CCCeeeec--CC
Q 037454 99 ATFFTTARPYV------TG-QGTSDNSTKP-ILPARKDTSFPTSFT----N---KLG-TLAISHVPV-NAPKTLTC--NS 159 (282)
Q Consensus 99 g~y~i~~~~~~------~~-~~~y~~~~~p-~~p~~~~~~~~~~~~----~---~~~-~~~~~~~~~-~~p~~~~~--n~ 159 (282)
|.||..+.... .| ++..+....| ..+..+. .....+. . .+. .+....... ....++.- ..
T Consensus 124 GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~-e~~l~l~Dw~~~~~~~~~~~~~~g~~~~~~d~~liNG~~~~ 202 (539)
T PLN02835 124 GTFTYFPSTLFHKAAGGFGAINVYERPRIPIPFPLPDG-DFTLLVGDWYKTSHKTLQQRLDSGKVLPFPDGVLINGQTQS 202 (539)
T ss_pred EeEEEEeCccchhcCcccceeEEeCCCCCCcCCCCCCc-eEEEEeeccccCCHHHHHHHhhcCCCCCCCceEEEccccCc
Confidence 99998765321 12 2233222111 1111111 1000000 0 000 010111110 01122210 11
Q ss_pred cccCCCCcE----EEcCCCCCCCCCceeeecCceEEEEecCCcCCCCCCCCCCCCCCCCcceEEEcCCCcEEEEEEEcCC
Q 037454 160 SPEGPNGTM----FQNRSILRAESHPLQLHGFNFFVVEQGSGNFDPNKHPSKFNLFYPIERNTEWCALGGWVAPRFLAHS 235 (282)
Q Consensus 160 ~~~~~~g~~----~~n~~~~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~adn 235 (282)
.++++.|++ |.|.. .....-||+.||.|+|++. .|.+ ..|...|++.+.+|+..-+-++++.
T Consensus 203 ~~~v~~G~~yRlRliNa~--~~~~~~f~i~gH~~~VI~~-DG~~-----------v~p~~~~~l~i~~GqRydvlv~~~~ 268 (539)
T PLN02835 203 TFSGDQGKTYMFRISNVG--LSTSLNFRIQGHTMKLVEV-EGSH-----------TIQNIYDSLDVHVGQSVAVLVTLNQ 268 (539)
T ss_pred eEEECCCCEEEEEEEEcC--CCccEEEEECCCEEEEEEE-CCcc-----------CCCceeeEEEECcCceEEEEEEcCC
Confidence 344556654 66764 3457889999999999998 3432 3366789999999999988888875
Q ss_pred -ccc
Q 037454 236 -PVV 238 (282)
Q Consensus 236 -PG~ 238 (282)
+|.
T Consensus 269 ~~g~ 272 (539)
T PLN02835 269 SPKD 272 (539)
T ss_pred CCCc
Confidence 454
No 24
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=95.17 E-value=0.017 Score=45.79 Aligned_cols=77 Identities=18% Similarity=0.074 Sum_probs=51.8
Q ss_pred CCCcE----EEcCCCCCCCCCceeeecCceEEEEecCCcCCCCCCCCCCCCCCCCcceEEEcCCCcEEEEEEEcCC-ccc
Q 037454 164 PNGTM----FQNRSILRAESHPLQLHGFNFFVVEQGSGNFDPNKHPSKFNLFYPIERNTEWCALGGWVAPRFLAHS-PVV 238 (282)
Q Consensus 164 ~~g~~----~~n~~~~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~adn-PG~ 238 (282)
+.|+. +.|. ....+.+|.||-...- . ...|+... . + ...|.||+...-+|.++. +|.
T Consensus 31 ~~Gd~v~i~~~N~---l~~~~siH~HG~~~~~--~--~~~DG~~~----~---~----~~~i~pG~~~~Y~~~~~~~~Gt 92 (117)
T PF07732_consen 31 REGDTVRITVTNN---LDEPTSIHWHGLHQPP--S--PWMDGVPG----V---T----QCPIAPGESFTYEFTANQQAGT 92 (117)
T ss_dssp ETTEEEEEEEEEE---SSSGBSEEEETSBSTT--G--GGGSGGTT----T---S----GSSBSTTEEEEEEEEESSCSEE
T ss_pred EcCCeeEEEEEec---cccccccccceeeeee--e--eecCCccc----c---c----ceeEEeecceeeeEeeeccccc
Confidence 46664 4554 3677889999965411 0 00111100 0 0 123778999999999998 998
Q ss_pred ----cccccCCCCCCccCCccceeEEEEeCC
Q 037454 239 ----CMVQVPPPASTHKLGIEDGMDCIVFDG 265 (282)
Q Consensus 239 ----CHi~~H~~~~~~~~Gm~~~~~~~v~~~ 265 (282)
||...|. .+|| ...|+|++.
T Consensus 93 ~wYH~H~~~~~-----~~GL--~G~~iV~~~ 116 (117)
T PF07732_consen 93 YWYHSHVHGQQ-----VMGL--YGAIIVEPP 116 (117)
T ss_dssp EEEEECSTTHH-----HTTE--EEEEEEE-T
T ss_pred eeEeeCCCchh-----cCcC--EEEEEEcCC
Confidence 9999998 8999 999999765
No 25
>PLN02991 oxidoreductase
Probab=94.92 E-value=0.78 Score=45.80 Aligned_cols=174 Identities=17% Similarity=0.127 Sum_probs=95.8
Q ss_pred CceEEcCCC-CCcccccCCC------------------ceEEEE---EeCCceeeeeEeCEEEecCCCeeEEEEe-C-CC
Q 037454 43 DANTTNGLP-GRSINCSACL------------------GRVTII---EADAVHVKPFETKTLHSFPPDRQQKFLS-K-PN 98 (282)
Q Consensus 43 d~~LING~~-~~~~ncs~~~------------------H~~~VI---a~DG~~v~P~~~~~i~l~~GqR~dvlv~-~-~~ 98 (282)
..++|||+- .|.+.+..++ |-+.+. ..||.+. .+-.|.||+++.--++ + +.
T Consensus 48 ~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~~-----tQcpI~PG~sftY~F~~~~q~ 122 (543)
T PLN02991 48 QGILINGKFPGPDIISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVYG-----TTCPIPPGKNYTYALQVKDQI 122 (543)
T ss_pred EEEEEcCCCCCCcEEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCCC-----CCCccCCCCcEEEEEEeCCCC
Confidence 577899985 3444332211 677763 4698642 2457999999999888 6 59
Q ss_pred CceEEEEeeC------cee-EEecCCCCCC-CCCCCCCCCccc---ccc----ccc-cccc-ccCCCCCCCeeeecCC--
Q 037454 99 ATFFTTARPY------VTG-QGTSDNSTKP-ILPARKDTSFPT---SFT----NKL-GTLA-ISHVPVNAPKTLTCNS-- 159 (282)
Q Consensus 99 g~y~i~~~~~------~~~-~~~y~~~~~p-~~p~~~~~~~~~---~~~----~~~-~~~~-~~~~~~~~p~~~~~n~-- 159 (282)
|.||..+... ..| ++..+....| ..+..++ .... .+. ..+ ..+. +...+.....++ |.
T Consensus 123 GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~-d~~i~l~DW~~~~~~~~~~~~~~~~~~~~~d~~li--NG~~ 199 (543)
T PLN02991 123 GSFYYFPSLGFHKAAGGFGAIRISSRPLIPVPFPAPAD-DYTVLIGDWYKTNHKDLRAQLDNGGKLPLPDGILI--NGRG 199 (543)
T ss_pred cceEEecCcchhhhCCCeeeEEEeCCcccCcccccccc-eeEEEecceecCCHHHHHHHhhcCCCCCCCCEEEE--ccCC
Confidence 9999876532 122 2333322111 1111111 0000 000 000 0011 111011111222 21
Q ss_pred ---cccCCCCcE----EEcCCCCCCCCCceeeecCceEEEEecCCcCCCCCCCCCCCCCCCCcceEEEcCCCcEEEEEEE
Q 037454 160 ---SPEGPNGTM----FQNRSILRAESHPLQLHGFNFFVVEQGSGNFDPNKHPSKFNLFYPIERNTEWCALGGWVAPRFL 232 (282)
Q Consensus 160 ---~~~~~~g~~----~~n~~~~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~ 232 (282)
.++++.|++ |.|.. ....+-|++.||.|+|++. .|.+ ..|...|++.+.+|...-+-+.
T Consensus 200 ~~~~~~v~~G~~yRlRiINa~--~~~~~~~~idgH~~tVIa~-DG~~-----------~~p~~~~~l~i~~GQRydvlv~ 265 (543)
T PLN02991 200 SGATLNIEPGKTYRLRISNVG--LQNSLNFRIQNHTMKLVEV-EGTH-----------TIQTPFSSLDVHVGQSYSVLIT 265 (543)
T ss_pred CCceEEECCCCEEEEEEEecc--CCeeEEEEECCCEEEEEEe-CCcc-----------ccceeeeEEEEcCCcEEEEEEE
Confidence 234455553 66764 2456899999999999998 3432 3467789999999999988888
Q ss_pred cCCccc
Q 037454 233 AHSPVV 238 (282)
Q Consensus 233 adnPG~ 238 (282)
||++.-
T Consensus 266 a~~~~~ 271 (543)
T PLN02991 266 ADQPAK 271 (543)
T ss_pred CCCCCC
Confidence 887543
No 26
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=94.39 E-value=0.044 Score=45.51 Aligned_cols=56 Identities=20% Similarity=0.163 Sum_probs=44.1
Q ss_pred EEcCCCCCCCCCceeeecCceEEEEecCCcCCCCCCCCCCCCCCCCcceEEEcCCCcEEEEEEEcCC-ccc
Q 037454 169 FQNRSILRAESHPLQLHGFNFFVVEQGSGNFDPNKHPSKFNLFYPIERNTEWCALGGWVAPRFLAHS-PVV 238 (282)
Q Consensus 169 ~~n~~~~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~adn-PG~ 238 (282)
+.|.. ....+.|++.||.|+||+. .|.+ ..|...|++.+.+|+.+-+-+.++. +|.
T Consensus 74 liNa~--~~~~~~~~i~gh~~~Via~-DG~~-----------v~p~~~~~l~l~~G~R~dvlv~~~~~~g~ 130 (159)
T PF00394_consen 74 LINAG--ASTSFNFSIDGHPMTVIAA-DGVP-----------VEPYKVDTLVLAPGQRYDVLVTADQPPGN 130 (159)
T ss_dssp EEEES--SS-BEEEEETTBCEEEEEE-TTEE-----------EEEEEESBEEE-TTEEEEEEEEECSCSSE
T ss_pred EEecc--CCeeEEEEeeccceeEeee-cccc-----------ccccccceEEeeCCeEEEEEEEeCCCCCe
Confidence 55664 3568999999999999998 3432 3488999999999999999999987 776
No 27
>PLN02191 L-ascorbate oxidase
Probab=92.14 E-value=0.24 Score=49.75 Aligned_cols=78 Identities=19% Similarity=0.121 Sum_probs=53.4
Q ss_pred CCCCcE----EEcCCCCCCCCCceeeecCceEEEEecCCcCCCCCCCCCCCCCCCCcceEEEcCCCcEEEEEEEcCCccc
Q 037454 163 GPNGTM----FQNRSILRAESHPLQLHGFNFFVVEQGSGNFDPNKHPSKFNLFYPIERNTEWCALGGWVAPRFLAHSPVV 238 (282)
Q Consensus 163 ~~~g~~----~~n~~~~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~adnPG~ 238 (282)
.+.|+. +.|. +....+.+|.||.... +....|+. +.---..|+||+....+|.++.+|.
T Consensus 58 ~~~Gd~v~v~v~N~--l~~~~tsiHwHGl~~~----~~~~~DGv-----------~gvtq~pI~PG~s~~Y~f~~~~~GT 120 (574)
T PLN02191 58 AVAGDTIVVHLTNK--LTTEGLVIHWHGIRQK----GSPWADGA-----------AGVTQCAINPGETFTYKFTVEKPGT 120 (574)
T ss_pred EEcCCEEEEEEEEC--CCCCCccEECCCCCCC----CCccccCC-----------CccccCCcCCCCeEEEEEECCCCeE
Confidence 346664 4443 2346799999998631 11111111 0001134789999999999999998
Q ss_pred ----cccccCCCCCCccCCccceeEEEEeC
Q 037454 239 ----CMVQVPPPASTHKLGIEDGMDCIVFD 264 (282)
Q Consensus 239 ----CHi~~H~~~~~~~~Gm~~~~~~~v~~ 264 (282)
||...+. ..|| .+-|+|.+
T Consensus 121 ~wYHsH~~~q~-----~~Gl--~G~liV~~ 143 (574)
T PLN02191 121 HFYHGHYGMQR-----SAGL--YGSLIVDV 143 (574)
T ss_pred EEEeeCcHHHH-----hCCC--EEEEEEcc
Confidence 9999999 9999 99999964
No 28
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=91.66 E-value=0.44 Score=47.51 Aligned_cols=63 Identities=16% Similarity=0.124 Sum_probs=47.9
Q ss_pred cCCCCcE----EEcCCCCCCCCCceeeecCceEEEEecCCcCCCCCCCCCCCCCCCCcceEEEcCCCcEEEEEEEcCC-c
Q 037454 162 EGPNGTM----FQNRSILRAESHPLQLHGFNFFVVEQGSGNFDPNKHPSKFNLFYPIERNTEWCALGGWVAPRFLAHS-P 236 (282)
Q Consensus 162 ~~~~g~~----~~n~~~~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~adn-P 236 (282)
.++.|++ |.|.. ....+-||++||.|+|++.. |.+ ..|...|++.|.+|+..-+-+.+++ +
T Consensus 190 ~v~~G~~~RlRlINa~--~~~~~~~~idgH~~~VIa~D-G~~-----------~~P~~~~~l~i~~GqRydVlv~a~~~~ 255 (539)
T TIGR03389 190 TVEPGKTYLLRIINAA--LNDELFFAIANHTLTVVEVD-ATY-----------TKPFKTKTIVIGPGQTTNVLLTADQSP 255 (539)
T ss_pred EECCCCEEEEEEEecc--CCceEEEEECCCeEEEEEeC-Ccc-----------cCceEeCeEEecCCCEEEEEEECCCCC
Confidence 3445553 66664 34567899999999999983 432 3578889999999999999999986 6
Q ss_pred cc
Q 037454 237 VV 238 (282)
Q Consensus 237 G~ 238 (282)
|.
T Consensus 256 g~ 257 (539)
T TIGR03389 256 GR 257 (539)
T ss_pred ce
Confidence 65
No 29
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=87.15 E-value=1.2 Score=37.00 Aligned_cols=43 Identities=16% Similarity=-0.007 Sum_probs=38.8
Q ss_pred cceEEEcCCCcEEEEEEEcCCccc----cccccCCCCCCccCCccceeEEEEeC
Q 037454 215 ERNTEWCALGGWVAPRFLAHSPVV----CMVQVPPPASTHKLGIEDGMDCIVFD 264 (282)
Q Consensus 215 ~rDTv~v~~~g~~~irf~adnPG~----CHi~~H~~~~~~~~Gm~~~~~~~v~~ 264 (282)
-..++.|.||....|-..+.+||. |=|-+|- ++|| -..|.|++
T Consensus 112 ~~~~v~L~PG~s~elvv~ft~~g~ye~~C~iPGHy-----~AGM--~g~itV~p 158 (158)
T COG4454 112 DPNTVTLAPGKSGELVVVFTGAGKYEFACNIPGHY-----EAGM--VGEITVSP 158 (158)
T ss_pred CcceeEeCCCCcEEEEEEecCCccEEEEecCCCcc-----cCCc--EEEEEeCC
Confidence 347899999999999999999999 9999999 9999 99888753
No 30
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=86.31 E-value=0.65 Score=38.30 Aligned_cols=31 Identities=10% Similarity=0.076 Sum_probs=27.6
Q ss_pred EEEEEEEcCCccc----cccccCCCCCCccCCccceeEEEEe
Q 037454 226 WVAPRFLAHSPVV----CMVQVPPPASTHKLGIEDGMDCIVF 263 (282)
Q Consensus 226 ~~~irf~adnPG~----CHi~~H~~~~~~~~Gm~~~~~~~v~ 263 (282)
+..+.|.++.+|. ||+..|. +.|| .+.|+|+
T Consensus 114 ~~~~tf~f~~aGtywyhC~~pgH~-----~~GM--~G~iiV~ 148 (148)
T TIGR03095 114 YTDFTYHFSTAGTYWYLCTYPGHA-----ENGM--YGKIVVK 148 (148)
T ss_pred eeEEEEECCCCeEEEEEcCChhHH-----HCCC--EEEEEEC
Confidence 5678899899999 9999999 9999 9998873
No 31
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=86.17 E-value=2.1 Score=34.00 Aligned_cols=47 Identities=6% Similarity=-0.083 Sum_probs=41.3
Q ss_pred CceEEEEEeCCcee-----------eeeEeCEEEecCCCeeEEEEe-CCCCceEEEEee
Q 037454 61 LGRVTIIEADAVHV-----------KPFETKTLHSFPPDRQQKFLS-KPNATFFTTARP 107 (282)
Q Consensus 61 ~H~~~VIa~DG~~v-----------~P~~~~~i~l~~GqR~dvlv~-~~~g~y~i~~~~ 107 (282)
+|.|.|++.++... .|...+++.|.+|++..+.++ +.+|.|.+....
T Consensus 62 G~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~~~G~w~~HCHi 120 (138)
T PF07731_consen 62 GHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRADNPGPWLFHCHI 120 (138)
T ss_dssp TSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEETSTEEEEEEESS
T ss_pred eeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEeecceEEEEEEch
Confidence 58999999999995 478899999999999999999 888998876643
No 32
>PLN02168 copper ion binding / pectinesterase
Probab=84.51 E-value=2.6 Score=42.21 Aligned_cols=78 Identities=10% Similarity=-0.012 Sum_probs=53.0
Q ss_pred CCCCcE----EEcCCCCCCCCCceeeecCceEEEEecCCcCCCCCCCCCCCCCCCCcceEEEcCCCcEEEEEEEc-CCcc
Q 037454 163 GPNGTM----FQNRSILRAESHPLQLHGFNFFVVEQGSGNFDPNKHPSKFNLFYPIERNTEWCALGGWVAPRFLA-HSPV 237 (282)
Q Consensus 163 ~~~g~~----~~n~~~~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~a-dnPG 237 (282)
.+.|+. +.|. -....-+|.||-.. ... ...|+ .+. -..-|+||+.-.-+|++ |.+|
T Consensus 61 ~~~GD~v~V~v~N~---L~~~ttiHWHGl~~--~~~--~~~DG-----------v~g-tQcpI~PG~sftY~F~~~~q~G 121 (545)
T PLN02168 61 ATANDVINVNIFNN---LTEPFLMTWNGLQL--RKN--SWQDG-----------VRG-TNCPILPGTNWTYRFQVKDQIG 121 (545)
T ss_pred EECCCEEEEEEEeC---CCCCccEeeCCccC--CCC--CCcCC-----------CCC-CcCCCCCCCcEEEEEEeCCCCc
Confidence 356664 3343 24567899999652 111 11121 112 22468899999999998 5899
Q ss_pred c----cccccCCCCCCccCCccceeEEEEeCCc
Q 037454 238 V----CMVQVPPPASTHKLGIEDGMDCIVFDGK 266 (282)
Q Consensus 238 ~----CHi~~H~~~~~~~~Gm~~~~~~~v~~~~ 266 (282)
- +|...+. ..|| .+-|+|.+.+
T Consensus 122 T~WYHsH~~~Q~-----~~GL--~G~lII~~~~ 147 (545)
T PLN02168 122 SYFYFPSLLLQK-----AAGG--YGAIRIYNPE 147 (545)
T ss_pred eEEEecChhhhh-----hCcc--eeEEEEcCCc
Confidence 8 9999999 9999 9999997654
No 33
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=82.33 E-value=2.5 Score=42.61 Aligned_cols=77 Identities=16% Similarity=0.057 Sum_probs=53.6
Q ss_pred cCCCCcE----EEcCCCCCCCCCceeeecCceEEEEecCCcCCCCCCCCCCCCCCCCcceEEEcCCCcEEEEEEEcCCcc
Q 037454 162 EGPNGTM----FQNRSILRAESHPLQLHGFNFFVVEQGSGNFDPNKHPSKFNLFYPIERNTEWCALGGWVAPRFLAHSPV 237 (282)
Q Consensus 162 ~~~~g~~----~~n~~~~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~adnPG 237 (282)
+.+.|+. +.|. -...+-+|+||-.-- ...|+. +..-...|+||+....+|.+..+|
T Consensus 79 r~~~Gd~v~v~v~N~---l~~~tsiHwHGl~~~------~~~DGv-----------P~vt~~~I~PG~s~~Y~f~~~~~G 138 (587)
T TIGR01480 79 RWREGDTVRLRVTNT---LPEDTSIHWHGILLP------FQMDGV-----------PGVSFAGIAPGETFTYRFPVRQSG 138 (587)
T ss_pred EEECCCEEEEEEEcC---CCCCceEEcCCCcCC------ccccCC-----------CcccccccCCCCeEEEEEECCCCe
Confidence 3356664 4454 357888999998621 111221 111112478999999999999999
Q ss_pred c----cccccCCCCCCccCCccceeEEEEeCC
Q 037454 238 V----CMVQVPPPASTHKLGIEDGMDCIVFDG 265 (282)
Q Consensus 238 ~----CHi~~H~~~~~~~~Gm~~~~~~~v~~~ 265 (282)
. ||...+. ..|| .+-|+|.+.
T Consensus 139 TyWYHsH~~~q~-----~~GL--~G~lIV~~~ 163 (587)
T TIGR01480 139 TYWYHSHSGFQE-----QAGL--YGPLIIDPA 163 (587)
T ss_pred eEEEecCchhHh-----hccc--eEEEEECCC
Confidence 8 9999999 9999 999999754
No 34
>PLN02792 oxidoreductase
Probab=80.82 E-value=4.7 Score=40.26 Aligned_cols=172 Identities=17% Similarity=0.133 Sum_probs=95.8
Q ss_pred CceEEcCCC-CCcccccCC------------------CceEEEEE---eCCceeeeeEeCEEEecCCCeeEEEEe-C-CC
Q 037454 43 DANTTNGLP-GRSINCSAC------------------LGRVTIIE---ADAVHVKPFETKTLHSFPPDRQQKFLS-K-PN 98 (282)
Q Consensus 43 d~~LING~~-~~~~ncs~~------------------~H~~~VIa---~DG~~v~P~~~~~i~l~~GqR~dvlv~-~-~~ 98 (282)
..++|||+- .|.+.+..+ =|-+.+-. .||.+. .+-.|.||+.+.--++ + +.
T Consensus 36 ~~~~vNGq~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~-----tqcPI~PG~sftY~F~~~~q~ 110 (536)
T PLN02792 36 RGILINGQFPGPEIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYG-----TTCPIPPGKNYTYDFQVKDQV 110 (536)
T ss_pred EEEEECCCCCCCcEEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCC-----CcCccCCCCcEEEEEEeCCCc
Confidence 578899985 455433221 16777765 688643 2257999999999888 6 59
Q ss_pred CceEEEEeeCc------ee-EEecCCCCCC-CCCCCCCCCccc---ccc----ccccc-cc-ccCCC-CCCCeeeecCC-
Q 037454 99 ATFFTTARPYV------TG-QGTSDNSTKP-ILPARKDTSFPT---SFT----NKLGT-LA-ISHVP-VNAPKTLTCNS- 159 (282)
Q Consensus 99 g~y~i~~~~~~------~~-~~~y~~~~~p-~~p~~~~~~~~~---~~~----~~~~~-~~-~~~~~-~~~p~~~~~n~- 159 (282)
|.||-.+.... .| ++.++....| ..+..+. .... .+. ..+.. +. +...+ .....++ |.
T Consensus 111 GT~WYHsH~~~q~~~Gl~G~liI~~~~~~~~p~~~~d~-e~~i~l~Dw~~~~~~~~~~~~~~g~~~~~~~d~~li--NG~ 187 (536)
T PLN02792 111 GSYFYFPSLAVQKAAGGYGSLRIYSLPRIPVPFPEPAG-DFTFLIGDWYRRNHTTLKKILDGGRKLPLMPDGVMI--NGQ 187 (536)
T ss_pred cceEEecCcchhhhcccccceEEeCCcccCcCCCcccc-eeEEEecccccCCHHHHHHHhhccCcCCCCCCEEEE--ecc
Confidence 99998765321 12 2233322111 1121111 0000 000 00000 00 00001 0011222 21
Q ss_pred ------cccCCCCcE----EEcCCCCCCCCCceeeecCceEEEEecCCcCCCCCCCCCCCCCCCCcceEEEcCCCcEEEE
Q 037454 160 ------SPEGPNGTM----FQNRSILRAESHPLQLHGFNFFVVEQGSGNFDPNKHPSKFNLFYPIERNTEWCALGGWVAP 229 (282)
Q Consensus 160 ------~~~~~~g~~----~~n~~~~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~i 229 (282)
.++.+.|++ |.|.. .....-|++.||.|+|++. .|.+ ..|...|++.|.+|...-+
T Consensus 188 ~~~~~~~~~v~~Gk~yRlRliNa~--~~~~~~f~i~gH~~tVI~~-DG~~-----------v~p~~~~~l~i~~GqRydV 253 (536)
T PLN02792 188 GVSYVYSITVDKGKTYRFRISNVG--LQTSLNFEILGHQLKLIEV-EGTH-----------TVQSMYTSLDIHVGQTYSV 253 (536)
T ss_pred CCCCcceEEECCCCEEEEEEEEcC--CCceEEEEECCcEEEEEEe-CCcc-----------CCCcceeEEEEccCceEEE
Confidence 234455654 66764 3567899999999999998 3432 3466779999999999999
Q ss_pred EEEcCCc
Q 037454 230 RFLAHSP 236 (282)
Q Consensus 230 rf~adnP 236 (282)
-+.++.+
T Consensus 254 lV~a~~~ 260 (536)
T PLN02792 254 LVTMDQP 260 (536)
T ss_pred EEEcCCC
Confidence 9998775
No 35
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=76.88 E-value=4.3 Score=41.06 Aligned_cols=67 Identities=12% Similarity=-0.131 Sum_probs=48.8
Q ss_pred CCCCceeeecCceEEEEecCCcCCCCCCCCCCCCCCCCcceEEEcCCCcEEEEEEEc-CCccc----cccccCCCCCCcc
Q 037454 177 AESHPLQLHGFNFFVVEQGSGNFDPNKHPSKFNLFYPIERNTEWCALGGWVAPRFLA-HSPVV----CMVQVPPPASTHK 251 (282)
Q Consensus 177 ~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~a-dnPG~----CHi~~H~~~~~~~ 251 (282)
...--+|.||-+..--. ..|+ ++. ...-|+||+...-+|.+ |.+|- +|..++. .
T Consensus 79 ~~~ttIHWHGl~q~~t~----w~DG-----------v~~-TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~-----~ 137 (596)
T PLN00044 79 DEPLLLTWHGVQQRKSA----WQDG-----------VGG-TNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHR-----A 137 (596)
T ss_pred CCCccEEECCccCCCCc----cccC-----------CCC-CcCCcCCCCcEEEEEEeCCCCceeEeeccchhhh-----h
Confidence 46778999996542211 1121 112 33567899999999999 68998 9999999 9
Q ss_pred CCccceeEEEEeCCc
Q 037454 252 LGIEDGMDCIVFDGK 266 (282)
Q Consensus 252 ~Gm~~~~~~~v~~~~ 266 (282)
.|| .+-|+|.+.+
T Consensus 138 ~Gl--~GalII~~~~ 150 (596)
T PLN00044 138 AGG--YGAITINNRD 150 (596)
T ss_pred CcC--eeEEEEcCcc
Confidence 999 9999997643
No 36
>PLN02354 copper ion binding / oxidoreductase
Probab=76.69 E-value=7.3 Score=39.06 Aligned_cols=56 Identities=16% Similarity=0.171 Sum_probs=43.7
Q ss_pred EEcCCCCCCCCCceeeecCceEEEEecCCcCCCCCCCCCCCCCCCCcceEEEcCCCcEEEEEEEcCC-ccc
Q 037454 169 FQNRSILRAESHPLQLHGFNFFVVEQGSGNFDPNKHPSKFNLFYPIERNTEWCALGGWVAPRFLAHS-PVV 238 (282)
Q Consensus 169 ~~n~~~~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~adn-PG~ 238 (282)
|.|.. .....-||+.||.|+||+. .|.+ ..|...|++.|.+|...-+-++|++ +|.
T Consensus 221 iINa~--~~~~~~f~IdgH~~tVIa~-DG~~-----------v~p~~~~~l~i~~GqRydVlv~a~~~~g~ 277 (552)
T PLN02354 221 ICNVG--LKSSLNFRIQGHKMKLVEM-EGSH-----------VLQNDYDSLDVHVGQCFSVLVTANQAPKD 277 (552)
T ss_pred EEecC--CCceEEEEECCceEEEEEe-CCcc-----------cCCcceeEEEEccCceEEEEEECCCCCCc
Confidence 66764 3567889999999999998 3432 3466679999999999999999875 565
No 37
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=73.83 E-value=8.8 Score=38.31 Aligned_cols=54 Identities=15% Similarity=0.195 Sum_probs=43.0
Q ss_pred EEcCCCCCCCCCceeeecCc-eEEEEecCCcCCCCCCCCCCCCCCCCcceEEEcCCCcEEEEEEEcCCc
Q 037454 169 FQNRSILRAESHPLQLHGFN-FFVVEQGSGNFDPNKHPSKFNLFYPIERNTEWCALGGWVAPRFLAHSP 236 (282)
Q Consensus 169 ~~n~~~~~~~~HP~HLHG~~-F~Vl~~g~G~~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~adnP 236 (282)
|.|.. .....-|++.||. |+|++.. |.+ ..|...|++.|.+|+..-+-++++++
T Consensus 212 lINa~--~~~~~~~~idgH~~~~VIa~D-G~~-----------~~P~~v~~l~l~~GqRydVlv~~~~~ 266 (538)
T TIGR03390 212 FIGAT--ALSLISLGIEDHENLTIIEAD-GSY-----------TKPAKIDHLQLGGGQRYSVLFKAKTE 266 (538)
T ss_pred EEccC--CceEEEEEECCCCeEEEEEeC-CCC-----------CCceEeCeEEEccCCEEEEEEECCCc
Confidence 66664 2456789999999 9999983 322 45888999999999999999999864
No 38
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=73.00 E-value=4.9 Score=30.42 Aligned_cols=37 Identities=16% Similarity=0.112 Sum_probs=31.6
Q ss_pred cceEEEcCCCcEEEEEEEcCCccc----cccccCCCCCCccCCccceeEEEE
Q 037454 215 ERNTEWCALGGWVAPRFLAHSPVV----CMVQVPPPASTHKLGIEDGMDCIV 262 (282)
Q Consensus 215 ~rDTv~v~~~g~~~irf~adnPG~----CHi~~H~~~~~~~~Gm~~~~~~~v 262 (282)
..++..+.||....+.|.+ ||. |- .|. ++|| -+.++|
T Consensus 58 ~~~~~~~~pG~t~~~tF~~--~G~y~y~C~--~H~-----~aGM--~G~I~V 98 (99)
T TIGR02656 58 SHKDLLNSPGESYEVTFST--PGTYTFYCE--PHR-----GAGM--VGKITV 98 (99)
T ss_pred cccccccCCCCEEEEEeCC--CEEEEEEcC--Ccc-----ccCC--EEEEEE
Confidence 3467888999998888887 898 98 899 9999 998877
No 39
>PRK10965 multicopper oxidase; Provisional
Probab=69.08 E-value=9.2 Score=38.08 Aligned_cols=75 Identities=21% Similarity=0.285 Sum_probs=51.1
Q ss_pred cCCCCcE----EEcCCCCCCCCCceeeecCceEEEEecCCcCCCCCCCCCCCCCCCCcceEEEcCCCcEEEEEEEcCCc-
Q 037454 162 EGPNGTM----FQNRSILRAESHPLQLHGFNFFVVEQGSGNFDPNKHPSKFNLFYPIERNTEWCALGGWVAPRFLAHSP- 236 (282)
Q Consensus 162 ~~~~g~~----~~n~~~~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~adnP- 236 (282)
+.+.|+. +.|. -....-+|+||-+.. +..|+. | -..|+||+....+|.++.+
T Consensus 80 r~~~Gd~v~v~~~N~---L~~~ttiHwHGl~~~------~~~DG~----------p----q~~I~PG~s~~Y~f~~~q~a 136 (523)
T PRK10965 80 RLQRGKAVTVDITNQ---LPEETTLHWHGLEVP------GEVDGG----------P----QGIIAPGGKRTVTFTVDQPA 136 (523)
T ss_pred EEECCCEEEEEEEEC---CCCCccEEcccccCC------CccCCC----------C----CCCCCCCCEEEEEeccCCCC
Confidence 3456664 4454 246778999998731 122321 1 1246789999999999874
Q ss_pred cc----ccc----ccCCCCCCccCCccceeEEEEeCCc
Q 037454 237 VV----CMV----QVPPPASTHKLGIEDGMDCIVFDGK 266 (282)
Q Consensus 237 G~----CHi----~~H~~~~~~~~Gm~~~~~~~v~~~~ 266 (282)
|- ||. ..+. ..|| ++.++|.+.+
T Consensus 137 GT~WYH~H~~g~t~~Qv-----~~GL--~G~lIV~d~~ 167 (523)
T PRK10965 137 ATCWFHPHQHGKTGRQV-----AMGL--AGLVLIEDDE 167 (523)
T ss_pred ceEEEecCCCCCcHHHH-----hCcC--eEEEEEcCcc
Confidence 76 785 6777 8999 9999997664
No 40
>PRK02888 nitrous-oxide reductase; Validated
Probab=62.30 E-value=25 Score=35.71 Aligned_cols=37 Identities=19% Similarity=0.086 Sum_probs=27.7
Q ss_pred EEcCCCcEEEEEEEcCCccc----ccc---ccCCCCCCccCCccceeEEEEeC
Q 037454 219 EWCALGGWVAPRFLAHSPVV----CMV---QVPPPASTHKLGIEDGMDCIVFD 264 (282)
Q Consensus 219 v~v~~~g~~~irf~adnPG~----CHi---~~H~~~~~~~~Gm~~~~~~~v~~ 264 (282)
+.+.||.+..+.|++|.||+ |.. ..|. +| ...++|.|
T Consensus 591 ~dv~PG~t~svtF~adkPGvy~~~CtefCGa~H~-------~M--~G~~iVep 634 (635)
T PRK02888 591 MEVAPQATASVTFTADKPGVYWYYCTWFCHALHM-------EM--RGRMLVEP 634 (635)
T ss_pred EEEcCCceEEEEEEcCCCEEEEEECCcccccCcc-------cc--eEEEEEEe
Confidence 35668999999999999999 444 2344 67 77777754
No 41
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=61.85 E-value=11 Score=27.95 Aligned_cols=53 Identities=13% Similarity=-0.096 Sum_probs=39.0
Q ss_pred CCCceEEcCCCCCcc-cccC--------CCceEEEEEeCCceeeeeEeCEEEecCCCeeEEE
Q 037454 41 VSDANTTNGLPGRSI-NCSA--------CLGRVTIIEADAVHVKPFETKTLHSFPPDRQQKF 93 (282)
Q Consensus 41 ~~d~~LING~~~~~~-ncs~--------~~H~~~VIa~DG~~v~P~~~~~i~l~~GqR~dvl 93 (282)
..-.+.|||+....- +++. -..+..+||++|..|.+.+-.+..|..|.|++|+
T Consensus 17 ~~m~I~VNG~~~~~~~~~tl~~LL~~l~~~~~~vAVevNg~iVpr~~w~~t~L~egD~IEIv 78 (84)
T PRK06083 17 VLITISINDQSIQVDISSSLAQIIAQLSLPELGCVFAINNQVVPRSEWQSTVLSSGDAISLF 78 (84)
T ss_pred ceEEEEECCeEEEcCCCCcHHHHHHHcCCCCceEEEEECCEEeCHHHcCcccCCCCCEEEEE
Confidence 345689999985210 2221 1245678899999999888889999999999986
No 42
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=60.73 E-value=14 Score=25.57 Aligned_cols=50 Identities=18% Similarity=0.065 Sum_probs=35.9
Q ss_pred ceEEcCCCCCcc-cccC--------CCceEEEEEeCCceeeeeEeCEEEecCCCeeEEE
Q 037454 44 ANTTNGLPGRSI-NCSA--------CLGRVTIIEADAVHVKPFETKTLHSFPPDRQQKF 93 (282)
Q Consensus 44 ~~LING~~~~~~-ncs~--------~~H~~~VIa~DG~~v~P~~~~~i~l~~GqR~dvl 93 (282)
.+.|||+....- +++. -..+..+++++|..+....-....|..|.|++++
T Consensus 2 ~i~vNG~~~~~~~~~tl~~lL~~l~~~~~~vav~vNg~iv~r~~~~~~~l~~gD~vei~ 60 (66)
T PRK05659 2 NIQLNGEPRELPDGESVAALLAREGLAGRRVAVEVNGEIVPRSQHASTALREGDVVEIV 60 (66)
T ss_pred EEEECCeEEEcCCCCCHHHHHHhcCCCCCeEEEEECCeEeCHHHcCcccCCCCCEEEEE
Confidence 368999874211 1221 1356778899999988877788889999999985
No 43
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=52.34 E-value=34 Score=25.64 Aligned_cols=36 Identities=22% Similarity=0.200 Sum_probs=30.9
Q ss_pred eEEEcCCCcEEEEEEEcCCccc----cccccCCCCCCccCCccceeEEEEe
Q 037454 217 NTEWCALGGWVAPRFLAHSPVV----CMVQVPPPASTHKLGIEDGMDCIVF 263 (282)
Q Consensus 217 DTv~v~~~g~~~irf~adnPG~----CHi~~H~~~~~~~~Gm~~~~~~~v~ 263 (282)
.+..+.+|....+.|. .||. |- - |. .+|| -+.++|+
T Consensus 60 ~~~~~~~G~~~~~tF~--~~G~y~y~C~-P-H~-----~~GM--~G~i~V~ 99 (99)
T PF00127_consen 60 SSPLLAPGETYSVTFT--KPGTYEYYCT-P-HY-----EAGM--VGTIIVE 99 (99)
T ss_dssp EEEEBSTTEEEEEEEE--SSEEEEEEET-T-TG-----GTTS--EEEEEEE
T ss_pred cceecCCCCEEEEEeC--CCeEEEEEcC-C-Cc-----ccCC--EEEEEEC
Confidence 6777889998888888 8998 99 4 99 9999 9998874
No 44
>PRK10883 FtsI repressor; Provisional
Probab=51.47 E-value=39 Score=33.16 Aligned_cols=56 Identities=20% Similarity=0.104 Sum_probs=41.5
Q ss_pred EEcCCCCCCCCCceee-ecCceEEEEecCCcCCCCCCCCCCCCCCCCcceEEEcCCCcEEEEEEEcCCcc
Q 037454 169 FQNRSILRAESHPLQL-HGFNFFVVEQGSGNFDPNKHPSKFNLFYPIERNTEWCALGGWVAPRFLAHSPV 237 (282)
Q Consensus 169 ~~n~~~~~~~~HP~HL-HG~~F~Vl~~g~G~~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~adnPG 237 (282)
|.|.. .....-+++ +||.|+|++...|.+ ..|...|.+.+.+|+.+.|-+.+++.+
T Consensus 233 liNas--~~~~~~l~l~d~~~~~vIa~DGg~~-----------~~P~~~~~l~l~pGeR~dvlVd~~~~~ 289 (471)
T PRK10883 233 LLNAS--NARRYQLQMSDGRPLHVIAGDQGFL-----------PAPVSVKQLSLAPGERREILVDMSNGD 289 (471)
T ss_pred EEEcc--CCceEEEEEcCCCeEEEEEeCCCcc-----------cCCcEeCeEEECCCCeEEEEEECCCCc
Confidence 66664 235667787 899999999854533 346777999999999998888876633
No 45
>PRK07440 hypothetical protein; Provisional
Probab=45.02 E-value=37 Score=24.03 Aligned_cols=51 Identities=16% Similarity=0.038 Sum_probs=36.5
Q ss_pred CceEEcCCCCCcc-cccC--------CCceEEEEEeCCceeeeeEeCEEEecCCCeeEEE
Q 037454 43 DANTTNGLPGRSI-NCSA--------CLGRVTIIEADAVHVKPFETKTLHSFPPDRQQKF 93 (282)
Q Consensus 43 d~~LING~~~~~~-ncs~--------~~H~~~VIa~DG~~v~P~~~~~i~l~~GqR~dvl 93 (282)
-.+.|||+....- +++. -.-+..+||.+|.-+...+-....|..|.|++++
T Consensus 5 m~i~vNG~~~~~~~~~tl~~lL~~l~~~~~~vav~~N~~iv~r~~w~~~~L~~gD~IEIv 64 (70)
T PRK07440 5 ITLQVNGETRTCSSGTSLPDLLQQLGFNPRLVAVEYNGEILHRQFWEQTQVQPGDRLEIV 64 (70)
T ss_pred eEEEECCEEEEcCCCCCHHHHHHHcCCCCCeEEEEECCEEeCHHHcCceecCCCCEEEEE
Confidence 3578999974211 1111 1246789999999998777778889999999886
No 46
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=41.43 E-value=34 Score=25.13 Aligned_cols=17 Identities=24% Similarity=0.122 Sum_probs=12.7
Q ss_pred EEEecCCCeeEEEEe-CC
Q 037454 81 TLHSFPPDRQQKFLS-KP 97 (282)
Q Consensus 81 ~i~l~~GqR~dvlv~-~~ 97 (282)
.|....|||||+.|. .+
T Consensus 17 ~l~f~sgq~~D~~v~d~~ 34 (82)
T PF12690_consen 17 TLQFPSGQRYDFVVKDKE 34 (82)
T ss_dssp EEEESSS--EEEEEE-TT
T ss_pred EEEeCCCCEEEEEEECCC
Confidence 578899999999999 44
No 47
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=40.36 E-value=40 Score=23.35 Aligned_cols=50 Identities=10% Similarity=-0.064 Sum_probs=34.0
Q ss_pred ceEEcCCCCCcc-cccC--------CCceEEEEEeCCceeeeeEeCEEEecCCCeeEEE
Q 037454 44 ANTTNGLPGRSI-NCSA--------CLGRVTIIEADAVHVKPFETKTLHSFPPDRQQKF 93 (282)
Q Consensus 44 ~~LING~~~~~~-ncs~--------~~H~~~VIa~DG~~v~P~~~~~i~l~~GqR~dvl 93 (282)
.+.|||+....- +++. ...+...||+++..+....-++..|..|.+++++
T Consensus 2 ~i~vNg~~~~~~~~~tl~~ll~~l~~~~~~vaVavN~~iv~r~~w~~~~L~~gD~Ieii 60 (66)
T PRK08053 2 QILFNDQPMQCAAGQTVHELLEQLNQLQPGAALAINQQIIPREQWAQHIVQDGDQILLF 60 (66)
T ss_pred EEEECCeEEEcCCCCCHHHHHHHcCCCCCcEEEEECCEEeChHHcCccccCCCCEEEEE
Confidence 367899875321 1111 1245678899999987666666679999998875
No 48
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=37.51 E-value=56 Score=22.43 Aligned_cols=49 Identities=18% Similarity=0.029 Sum_probs=32.5
Q ss_pred eEEcCCCCCcc-cccC--------CCceEEEEEeCCceeeeeEeCEEEecCCCeeEEE
Q 037454 45 NTTNGLPGRSI-NCSA--------CLGRVTIIEADAVHVKPFETKTLHSFPPDRQQKF 93 (282)
Q Consensus 45 ~LING~~~~~~-ncs~--------~~H~~~VIa~DG~~v~P~~~~~i~l~~GqR~dvl 93 (282)
+.|||+....- +++. -..+..+|+++|..+.+..-....|..|.+++++
T Consensus 2 i~iNg~~~~~~~~~tv~~ll~~l~~~~~~i~V~vNg~~v~~~~~~~~~L~~gD~V~ii 59 (65)
T cd00565 2 ITVNGEPREVEEGATLAELLEELGLDPRGVAVALNGEIVPRSEWASTPLQDGDRIEIV 59 (65)
T ss_pred EEECCeEEEcCCCCCHHHHHHHcCCCCCcEEEEECCEEcCHHHcCceecCCCCEEEEE
Confidence 67888874211 1221 1234558899999988766666778889888875
No 49
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=34.76 E-value=58 Score=22.36 Aligned_cols=31 Identities=10% Similarity=-0.022 Sum_probs=24.6
Q ss_pred eEEEEEeCCceeeeeEeCEEEecCCCeeEEE
Q 037454 63 RVTIIEADAVHVKPFETKTLHSFPPDRQQKF 93 (282)
Q Consensus 63 ~~~VIa~DG~~v~P~~~~~i~l~~GqR~dvl 93 (282)
+..+||+++..+...+-....|..|.|+.++
T Consensus 29 ~~vavavN~~iv~~~~~~~~~L~dgD~Ieiv 59 (65)
T PRK06488 29 NWLATAVNGELVHKEARAQFVLHEGDRIEIL 59 (65)
T ss_pred CeEEEEECCEEcCHHHcCccccCCCCEEEEE
Confidence 3456899999888766677788999888875
No 50
>PF09122 DUF1930: Domain of unknown function (DUF1930); InterPro: IPR015206 This entry represents a domain found in 3-mercaptopyruvate sulphurtransferase which has no known function. This domain adopts a structure consisting of a four-stranded antiparallel beta-sheet and an alpha-helix, arranged in a beta(2)-alpha-beta(2) fashion, and bearing a remarkable structural similarity to the FK506-binding protein class of peptidylprolyl cis/trans-isomerase []. ; PDB: 1OKG_A.
Probab=29.83 E-value=12 Score=26.19 Aligned_cols=39 Identities=33% Similarity=0.397 Sum_probs=22.8
Q ss_pred cccCCCceEEEEEeCCceee-ee-EeC--EEEecCCCeeEEEEe
Q 037454 56 NCSACLGRVTIIEADAVHVK-PF-ETK--TLHSFPPDRQQKFLS 95 (282)
Q Consensus 56 ncs~~~H~~~VIa~DG~~v~-P~-~~~--~i~l~~GqR~dvlv~ 95 (282)
|-.+..++++++ +||..++ |- ++. -..+..||++.|.++
T Consensus 13 N~KA~~~~~tl~-vDg~~v~~PD~El~sA~~HlH~GEkA~V~Fk 55 (68)
T PF09122_consen 13 NPKATLDNATLI-VDGEIVENPDAELKSALVHLHIGEKAQVFFK 55 (68)
T ss_dssp S-B--TTT--EE-ETTEEESS--HHHHHHHTT-BTT-EEEEEET
T ss_pred CccccccceEEE-EcCeEcCCCCHHHHHHHHHhhcCceeEEEEe
Confidence 333445778877 6999998 73 343 357899999999997
No 51
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=28.02 E-value=61 Score=26.32 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=20.4
Q ss_pred EEEcCCCcEEEEEEEcCCccc----ccc
Q 037454 218 TEWCALGGWVAPRFLAHSPVV----CMV 241 (282)
Q Consensus 218 Tv~v~~~g~~~irf~adnPG~----CHi 241 (282)
...+++|+...++|.++-||. |-+
T Consensus 93 s~~I~pGet~TitF~adKpG~Y~y~C~~ 120 (135)
T TIGR03096 93 SEVIKAGETKTISFKADKAGAFTIWCQL 120 (135)
T ss_pred ceEECCCCeEEEEEECCCCEEEEEeCCC
Confidence 356788999999999999999 755
No 52
>COG3731 SrlB Phosphotransferase system sorbitol-specific component IIA [Carbohydrate transport and metabolism]
Probab=26.13 E-value=41 Score=26.71 Aligned_cols=45 Identities=31% Similarity=0.231 Sum_probs=32.1
Q ss_pred eeeecCceEEEEecCCcCCCCCCCCCCCCCCCCcceEEEcCCCcEEEEEEE----cCCccccccccCC
Q 037454 182 LQLHGFNFFVVEQGSGNFDPNKHPSKFNLFYPIERNTEWCALGGWVAPRFL----AHSPVVCMVQVPP 245 (282)
Q Consensus 182 ~HLHG~~F~Vl~~g~G~~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~----adnPG~CHi~~H~ 245 (282)
+-|-||.|.|.+.|.+.++ .+..-|++.|||. |+.||.-|..--.
T Consensus 58 l~lg~~~y~ItaVG~~an~-------------------nl~ElGHvti~FdG~~~ae~PG~I~vs~p~ 106 (123)
T COG3731 58 LTLGGHCYPITAVGSVAND-------------------NLRELGHVTIRFDGATEAEFPGTIHVSGPV 106 (123)
T ss_pred EEECCceEEEEEechHHHH-------------------HHHhhCcEEEEECCCcccccCCeEEecCCC
Confidence 6677889999999865432 1335699999998 4678885555433
No 53
>PF11604 CusF_Ec: Copper binding periplasmic protein CusF; InterPro: IPR021647 CusF is a periplasmic protein involved in copper and silver resistance in Escherichia coil. CusF forms a five-stranded beta-barrel OB fold. Cu(I) binds to H36, M47 and M49 which are conserved residues in the protein []. ; PDB: 2L55_A 2VB3_X 1ZEQ_X 2QCP_X 3E6Z_X 2VB2_X.
Probab=25.88 E-value=88 Score=22.08 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=16.7
Q ss_pred EecCCCeeEEEEe-CCCCceEEEE
Q 037454 83 HSFPPDRQQKFLS-KPNATFFTTA 105 (282)
Q Consensus 83 ~l~~GqR~dvlv~-~~~g~y~i~~ 105 (282)
.|.+|+++.|.+. ...+.|.|..
T Consensus 42 ~l~~Gd~V~F~~~~~~~~~~~I~~ 65 (70)
T PF11604_consen 42 GLKPGDKVRFTFERTDDGSYVITA 65 (70)
T ss_dssp S-STT-EEEEEEEEETTCEEEEEE
T ss_pred cCCCCCEEEEEEEECCCCcEEEEE
Confidence 4789999999998 6667788754
No 54
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=25.82 E-value=2e+02 Score=23.37 Aligned_cols=25 Identities=4% Similarity=-0.085 Sum_probs=14.6
Q ss_pred EEEecCCCeeEEEEe-CCCCceEEEE
Q 037454 81 TLHSFPPDRQQKFLS-KPNATFFTTA 105 (282)
Q Consensus 81 ~i~l~~GqR~dvlv~-~~~g~y~i~~ 105 (282)
+..|.+||+..+.++ +++|.|+...
T Consensus 93 s~~I~pGet~TitF~adKpG~Y~y~C 118 (135)
T TIGR03096 93 SEVIKAGETKTISFKADKAGAFTIWC 118 (135)
T ss_pred ceEECCCCeEEEEEECCCCEEEEEeC
Confidence 345666666666666 5566665443
No 55
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=24.41 E-value=70 Score=21.76 Aligned_cols=31 Identities=10% Similarity=-0.033 Sum_probs=23.9
Q ss_pred eEEEEEeCCceeeeeEeCEEEecCCCeeEEE
Q 037454 63 RVTIIEADAVHVKPFETKTLHSFPPDRQQKF 93 (282)
Q Consensus 63 ~~~VIa~DG~~v~P~~~~~i~l~~GqR~dvl 93 (282)
...+++++|..+....-....|..|.|++|+
T Consensus 29 ~~~~v~vN~~~v~~~~~~~~~L~~gD~vei~ 59 (65)
T PRK06944 29 PPFAVAVNGDFVARTQHAARALAAGDRLDLV 59 (65)
T ss_pred CCeEEEECCEEcCchhcccccCCCCCEEEEE
Confidence 3457899999987655556668999998876
No 56
>COG5033 TFG3 Transcription initiation factor IIF, auxiliary subunit [Transcription]
Probab=23.68 E-value=54 Score=28.74 Aligned_cols=13 Identities=46% Similarity=0.761 Sum_probs=11.5
Q ss_pred ceEEEEecCCcCC
Q 037454 188 NFFVVEQGSGNFD 200 (282)
Q Consensus 188 ~F~Vl~~g~G~~~ 200 (282)
.|+|..+|+|.|+
T Consensus 76 PFeI~EtGWGEF~ 88 (225)
T COG5033 76 PFEIKETGWGEFD 88 (225)
T ss_pred CcEEEecccccce
Confidence 4899999999886
No 57
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=23.60 E-value=87 Score=21.41 Aligned_cols=31 Identities=16% Similarity=-0.002 Sum_probs=25.8
Q ss_pred eEEEEEeCCceeeeeEeCEEEecCCCeeEEE
Q 037454 63 RVTIIEADAVHVKPFETKTLHSFPPDRQQKF 93 (282)
Q Consensus 63 ~~~VIa~DG~~v~P~~~~~i~l~~GqR~dvl 93 (282)
+..+||++|..+.+-+-....|..|.|++++
T Consensus 28 ~~v~v~vN~~iv~~~~~~~~~L~~gD~veii 58 (64)
T TIGR01683 28 RRVAVAVNGEIVPRSEWDDTILKEGDRIEIV 58 (64)
T ss_pred CeEEEEECCEEcCHHHcCceecCCCCEEEEE
Confidence 5678899999998776677789999998876
No 58
>TIGR03112 6_pyr_pter_rel 6-pyruvoyl tetrahydropterin synthase-related domain. Members of this family are small proteins, or small domains of larger proteins, that occur in certain Firmicutes in the same regions as members of families TIGR03110 and TIGR03111. Members of TIGR03110 resemble exosortase, a proposed protein sorting transpeptidase (see TIGR02602). TIGR03111 represents a small clade among the group 2 glycosyltransferases. Members of the current protein family resemble eukaryotic known and prokaryotic predicted 6-pyruvoyl tetrahydropterin synthases.
Probab=22.72 E-value=38 Score=26.49 Aligned_cols=13 Identities=8% Similarity=-0.087 Sum_probs=10.3
Q ss_pred eeeecCceEEEEe
Q 037454 182 LQLHGFNFFVVEQ 194 (282)
Q Consensus 182 ~HLHG~~F~Vl~~ 194 (282)
=++|||.|.|.-.
T Consensus 20 ~~lHGHty~vev~ 32 (113)
T TIGR03112 20 GNKHPHTWEITIF 32 (113)
T ss_pred CCcCCCcEEEEEE
Confidence 4689999998743
No 59
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=22.07 E-value=97 Score=24.35 Aligned_cols=33 Identities=15% Similarity=0.009 Sum_probs=26.0
Q ss_pred CCcEEEEEEEcCCccc----cccccCCCCCCccCCccceeEEEEeCCc
Q 037454 223 LGGWVAPRFLAHSPVV----CMVQVPPPASTHKLGIEDGMDCIVFDGK 266 (282)
Q Consensus 223 ~~g~~~irf~adnPG~----CHi~~H~~~~~~~~Gm~~~~~~~v~~~~ 266 (282)
.++.....| +.||. |= .|. .+|| -+.++|.+..
T Consensus 54 ~g~~~~~tF--~~~G~Y~Y~C~--pH~-----~~GM--~G~V~Vg~~~ 90 (116)
T TIGR02375 54 INEEYTVTV--TEEGVYGVKCT--PHY-----GMGM--VALIQVGDPP 90 (116)
T ss_pred CCCEEEEEe--CCCEEEEEEcC--CCc-----cCCC--EEEEEECCCC
Confidence 466655555 67999 97 999 9999 9999997653
No 60
>PF05354 Phage_attach: Phage Head-Tail Attachment; InterPro: IPR008018 This entry is represented by Bacteriophage lambda, FII. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The phage head-tail attachment protein is required for the joining of phage heads and tails at the last step of morphogenesis [].; GO: 0042963 phage assembly, 0019028 viral capsid; PDB: 2KX4_A 1K0H_A.
Probab=21.85 E-value=50 Score=26.14 Aligned_cols=28 Identities=11% Similarity=-0.076 Sum_probs=19.7
Q ss_pred CcceEEEcCCCcEEEEEEEcCCcccccc
Q 037454 214 IERNTEWCALGGWVAPRFLAHSPVVCMV 241 (282)
Q Consensus 214 ~~rDTv~v~~~g~~~irf~adnPG~CHi 241 (282)
-++||+.|-.-.|.|-|..+|--|.|||
T Consensus 76 ~r~DtL~I~g~~y~Vd~v~pD~~G~t~I 103 (117)
T PF05354_consen 76 KRRDTLTIGGESYWVDRVGPDGGGSTRI 103 (117)
T ss_dssp -TT-EEEETTTEEEBS---SSSSS-CCE
T ss_pred hcCCeEEECCEEEEEEeeccCCCccEEE
Confidence 3899999999999998888888888887
No 61
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=21.29 E-value=1.4e+02 Score=25.85 Aligned_cols=37 Identities=14% Similarity=0.011 Sum_probs=28.1
Q ss_pred CCcEEEEEEEcCCccc----cccccCCCCCCccCCccceeEEEEeCCc
Q 037454 223 LGGWVAPRFLAHSPVV----CMVQVPPPASTHKLGIEDGMDCIVFDGK 266 (282)
Q Consensus 223 ~~g~~~irf~adnPG~----CHi~~H~~~~~~~~Gm~~~~~~~v~~~~ 266 (282)
+|.....-|.+=.||. |=+.-|. +.|| -..|+|+...
T Consensus 149 ~G~s~~~~~~~l~aG~YwlvC~ipGHA-----~sGM--w~~LiVs~~v 189 (196)
T PF06525_consen 149 SGQSASGVYNDLPAGYYWLVCGIPGHA-----ESGM--WGVLIVSSNV 189 (196)
T ss_pred CCceeeEEEccCCCceEEEEccCCChh-----hcCC--EEEEEEecCc
Confidence 4444444455556898 9999999 9999 9999997653
No 62
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=21.10 E-value=1.6e+02 Score=29.69 Aligned_cols=40 Identities=15% Similarity=-0.043 Sum_probs=34.9
Q ss_pred EcCCCcEEEEEEEcC-Cccc----cccccCCCCCCccCCccceeEEEEeCCc
Q 037454 220 WCALGGWVAPRFLAH-SPVV----CMVQVPPPASTHKLGIEDGMDCIVFDGK 266 (282)
Q Consensus 220 ~v~~~g~~~irf~ad-nPG~----CHi~~H~~~~~~~~Gm~~~~~~~v~~~~ 266 (282)
-++||....=+|..+ +-|- -|..||- +.|+ -+-|+|.+..
T Consensus 105 PI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~R-----a~G~--~G~liI~~~~ 149 (563)
T KOG1263|consen 105 PIQPGENFTYRFTVKDQIGTLWYHSHVSWQR-----ATGV--FGALIINPRP 149 (563)
T ss_pred CcCCCCeEEEEEEeCCcceeEEEeecccccc-----ccCc--eeEEEEcCCc
Confidence 457999999999986 8997 9999999 9999 9999997664
No 63
>PRK02710 plastocyanin; Provisional
Probab=21.04 E-value=1.4e+02 Score=23.20 Aligned_cols=32 Identities=19% Similarity=0.051 Sum_probs=26.5
Q ss_pred EcCCCcEEEEEEEcCCccc----cccccCCCCCCccCCccceeEEEE
Q 037454 220 WCALGGWVAPRFLAHSPVV----CMVQVPPPASTHKLGIEDGMDCIV 262 (282)
Q Consensus 220 ~v~~~g~~~irf~adnPG~----CHi~~H~~~~~~~~Gm~~~~~~~v 262 (282)
.+.+|+...+.|.. ||. |= .|. .+|| -+.++|
T Consensus 83 ~~~pg~t~~~tF~~--~G~y~y~C~--~H~-----~~gM--~G~I~V 118 (119)
T PRK02710 83 AFAPGESWEETFSE--AGTYTYYCE--PHR-----GAGM--VGKITV 118 (119)
T ss_pred ccCCCCEEEEEecC--CEEEEEEcC--CCc-----cCCc--EEEEEE
Confidence 46788887777776 898 96 899 9999 998887
No 64
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=20.34 E-value=1.4e+02 Score=21.04 Aligned_cols=44 Identities=9% Similarity=0.090 Sum_probs=22.8
Q ss_pred ceEEEEEeCCce--eeeeEeCEEEecCCCeeEEEEe---CC---CCceEEEEee
Q 037454 62 GRVTIIEADAVH--VKPFETKTLHSFPPDRQQKFLS---KP---NATFFTTARP 107 (282)
Q Consensus 62 H~~~VIa~DG~~--v~P~~~~~i~l~~GqR~dvlv~---~~---~g~y~i~~~~ 107 (282)
-.+.+=.=+|=- ..|..+. .|.+||...+-++ .+ +|+|.|.+..
T Consensus 24 v~~~l~~P~GW~~~~~~~~~~--~l~pG~s~~~~~~V~vp~~a~~G~y~v~~~a 75 (78)
T PF10633_consen 24 VSLSLSLPEGWTVSASPASVP--SLPPGESVTVTFTVTVPADAAPGTYTVTVTA 75 (78)
T ss_dssp -EEEEE--TTSE---EEEEE----B-TTSEEEEEEEEEE-TT--SEEEEEEEEE
T ss_pred EEEEEeCCCCccccCCccccc--cCCCCCEEEEEEEEECCCCCCCceEEEEEEE
Confidence 344444445544 3354444 8899987766555 33 6999988754
Done!