BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037455
(755 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 436 bits (1120), Expect = e-122, Method: Compositional matrix adjust.
Identities = 272/660 (41%), Positives = 358/660 (54%), Gaps = 45/660 (6%)
Query: 115 TTRTPQFLGLKKHAGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEV 174
TT T FL L +G+WPA+G G D+IV +LD+GIWPES S+ D GMP +P+RW+G C+
Sbjct: 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKP 60
Query: 175 GVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRDFFXXXXXXXXXXXXXRVQD 234
G +FN S CNRKLIGA F+KGI N ++ T +S RD +
Sbjct: 61 GTQFNASMCNRKLIGANYFNKGILANDPTVNIT--MNSARDTDGHGTHCASITAGNFAKG 118
Query: 235 VDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAF 294
V HFGYA GTA GVAP AR+A+YK F N +D++A MDQA+ADGVD++S+S +
Sbjct: 119 VSHFGYAPGTARGVAPRARLAVYKFSF---NEGTFTSDLIAAMDQAVADGVDMISISYGY 175
Query: 295 PETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAH 354
E+ I+I +F A+ +G+ V+ SAGN GP S+ NG+PWI V +G DR FA
Sbjct: 176 RFIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGT 235
Query: 355 VTLGNEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDY 414
+TLGN L + G S++P FV P+ + N++ C S+ + D
Sbjct: 236 LTLGN-GLKIRGWSLFPARAFVRDSPVIY---NKTLSDCSSEELLSQVENPENTIVICDD 291
Query: 415 NGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGN 474
NG+ + Q+ + ++ AIF ++ F P V VN K+G+ V Y+ N
Sbjct: 292 NGDFS--DQMRIITRARLKAAIFISEDPGVFRSATFPNPGVVVNKKEGKQVINYVKNSVT 349
Query: 475 ATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPI 534
T +I FQ T L TKPAP VA S+RGPS I KPDILAPGV ILAA+ PN I
Sbjct: 350 PTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNVFATSI 409
Query: 535 -RXXXXXXXXXXXSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMI 593
SGTSM+ PHAA IAA++KA H +WS +AIRSA+MTTAD LDN I
Sbjct: 410 GTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPI 469
Query: 594 TDKSTGVAGTPLDFGAGHINPNKAMDPGLVVLTGTSDFT--------------------- 632
D A TPLD GAGH++PN+A+DPGLV D+
Sbjct: 470 KDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSA 529
Query: 633 ---CQYANLDLNYPSFII---ILNNTNTASFTFKRVLTNVADTKSAYTAAVKAPAGMKVK 686
C + DLNYPSFI I N FKR +TNV + Y A +KAP +
Sbjct: 530 SHNCSNPSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTIS 589
Query: 687 VQPATLSFAGKYSKAEFSLTVNINLGSAVSPKSNFLGNFGYLTWYDVNGKHLVRSPIVSA 746
V P L F K K ++LT+ +G + N G +TW + NG H VRSPIV++
Sbjct: 590 VSPQILVFKNKNEKQSYTLTIRY-IGDEGQSR-----NVGSITWVEQNGNHSVRSPIVTS 643
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 331 bits (848), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 236/663 (35%), Positives = 329/663 (49%), Gaps = 82/663 (12%)
Query: 115 TTRTPQFLGLKKHAGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEV 174
TTR+ FLG V + S+I+VG+LDTGIWPES S+DD G P P +W+G CE
Sbjct: 1 TTRSWDFLGFPLT--VPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCET 58
Query: 175 GVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRDFFXXXXXXXXXXXXXRVQD 234
F CNRK+IGARS+ G + D + PRD V
Sbjct: 59 SNNF---RCNRKIIGARSYHIG------RPISPGDVNGPRDTNGHGTHTASTAAGGLVSQ 109
Query: 235 VDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSL-- 292
+ +G GTA G P+ARIA YKV + N ++TD+LA D AIADGVDI+SLS+
Sbjct: 110 ANLYGLGLGTARGGVPLARIAAYKVCW---NDGCSDTDILAAYDDAIADGVDIISLSVGG 166
Query: 293 AFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFA 352
A P F + IAIG+F A++RGI + SAGN GP ++ + +PW+ +V A T+DR+F
Sbjct: 167 ANPRHYF-VDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFV 225
Query: 353 AHVTLGNEE------LTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGK 406
V +GN + + YP L R+ G+ + C S + + GK
Sbjct: 226 TQVQIGNGQSFQGVSINTFDNQYYP--LVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGK 283
Query: 407 YIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSPEVFNMPFVAVNLKDGELVK 466
+ C + G ++ L+ GAAG + ++++R + + + +P ++ D
Sbjct: 284 IVVCEASF-GPHEFFKSLD-----GAAGVLMTSNTRDYA--DSYPLPSSVLDPNDLLATL 335
Query: 467 KYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWV 526
+YI ++ + +I TIL AP V +FSSRGP+ + ++KPDI PGV+ILAAW
Sbjct: 336 RYIYSIRSPGATIFKSTTILNAS-APVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWP 394
Query: 527 PNNPWQPIRXXXXXXXXXXXSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVL 586
P IR SGTSMSCPH IA VK + WS AAI+SALMTTA +
Sbjct: 395 SVAPVGGIR---RNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPM 451
Query: 587 DNAYGMITDKSTGVAGTPLDFGAGHINPNKAMDPGLVVLTGTSDFT-------------- 632
+ + + +G+GH+NP KA+ PGLV SD+
Sbjct: 452 NARFNPQAE---------FAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVR 502
Query: 633 --------CQYANL----DLNYPSFIIILNNTNTASFTFKRVLTNVADTKSAYTAAVKAP 680
C N DLNYPSF + ++ + T + F R LT+VA S Y A + AP
Sbjct: 503 RITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAP 562
Query: 681 AGMKVKVQPATLSFAGKYSKAEFSLTVNINLGSAVSPKSNFLGNFGYLTWYDVNGKHLVR 740
G+ + V P LSF G + F+LTV ++ V S L W D G H VR
Sbjct: 563 QGLTISVNPNVLSFNGLGDRKSFTLTVRGSIKGFVVSAS--------LVWSD--GVHYVR 612
Query: 741 SPI 743
SPI
Sbjct: 613 SPI 615
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 94/396 (23%), Positives = 154/396 (38%), Gaps = 57/396 (14%)
Query: 247 GVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPETTF----DEN 302
G P A++ + +V N LA + + A+ G ++++S + DE
Sbjct: 121 GAMPEAQLLLMRVEIVN-GLADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDET 179
Query: 303 PIAIGAFAALKRGIFVACSAGNSGPRPYSIR---------------NGAPWITAVGAGTV 347
A A +G+ + SAGN R A V + +
Sbjct: 180 KKAFDY--AKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSP 237
Query: 348 DREFAAHVTLGNEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKY 407
D++ T+ ++ V N F + + Y NR + D K V GK
Sbjct: 238 DKQLTETATVKTDDHQAKEMPVLSTNRFEPNKAYDYAYANRGMK-----EDDFKDVKGK- 291
Query: 408 IFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLS---PEVFNMPFVAVNLKDGEL 464
A G++ ++ +K+GA G + + + P V MP ++ KDG L
Sbjct: 292 --IALIERGDIDFKDKIANAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLL 349
Query: 465 VKKYIINVGNATVSIKFQIT--ILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDIL 522
+K N+ +I F T +L T +++ FSS G L + +KPDI APG DIL
Sbjct: 350 LK------DNSKKTITFNATPKVLPTASDTKLSRFSSWG--LTADGNIKPDIAAPGQDIL 401
Query: 523 AAWVPNNPWQPIRXXXXXXXXXXXSGTSMSCPHAAAIAALVKATHR-DWSSAAIRSALMT 581
++ V NN + + SGTSMS P A I L++ + + L
Sbjct: 402 SS-VANNKYAKL------------SGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDL 448
Query: 582 TADVLDNAYGMITDKSTGVAGTPLDFGAGHINPNKA 617
VL ++ + D+ +P GAG ++ KA
Sbjct: 449 AKKVLMSSATALYDEDEKAYFSPRQQGAGAVDAKKA 484
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 68/136 (50%), Gaps = 19/136 (13%)
Query: 483 ITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPW-QPIRXXXXXX 541
IT+ + +FSSRGP+ + LKP+++APG I+AA QPI
Sbjct: 298 ITVGAVDKYDVITDFSSRGPTADNR--LKPEVVAPGNWIIAARASGTSMGQPINDYYTAA 355
Query: 542 XXXXXSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVA 601
GT+M+ PH A IAAL+ H W+ +++AL+ TAD++ D+ +A
Sbjct: 356 -----PGTAMATPHVAGIAALLLQAHPSWTPDKVKTALIETADIVK------PDEIADIA 404
Query: 602 GTPLDFGAGHINPNKA 617
+GAG +N KA
Sbjct: 405 -----YGAGRVNAYKA 415
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 60/113 (53%), Gaps = 6/113 (5%)
Query: 241 AKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIAD----GVDIMSLSLAFPE 296
+ G G+AP A++ KVL N + + +D++ G+D A+ + G+ +++LSL +
Sbjct: 195 SNGKYKGMAPGAKLVGIKVL--NGQGSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQ 252
Query: 297 TTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDR 349
++ + ++ A G+ V +AGNSGP Y++ + A + G VD+
Sbjct: 253 SSDGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGAVDK 305
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 21/98 (21%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMS 552
Q A+FSS GP L D++APGV I + +P N + SGTSM+
Sbjct: 176 QRASFSSVGPEL--------DVMAPGVSICST-LPGNKY------------GAKSGTSMA 214
Query: 553 CPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAY 590
PH A AAL+ + H +W++ +RS+L T L N++
Sbjct: 215 SPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGNSF 252
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 237 HFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPE 296
H + GT + VAP A + KVL ++ + + ++ G++ AIA+ +D++++SL P
Sbjct: 64 HGTHVAGTVLAVAPSASLYAVKVLGADG--SGQYSWIINGIEWAIANNMDVINMSLGGPS 121
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 21/98 (21%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMS 552
Q A+FSS GP L D++APGV I + +P N + SGTSM+
Sbjct: 176 QRASFSSVGPEL--------DVMAPGVSICST-LPGNKY------------GAKSGTSMA 214
Query: 553 CPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAY 590
PH A AAL+ + H +W++ +RS+L T L +++
Sbjct: 215 SPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSF 252
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 237 HFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPE 296
H + GT + VAP A + KVL ++ + + ++ G++ AIA+ +D++++SL P
Sbjct: 64 HGTHVAGTVLAVAPSASLYAVKVLGADG--SGQYSWIINGIEWAIANNMDVINMSLGGPS 121
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 21/98 (21%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMS 552
Q A+FSS GP L D++APGV I + +P N + SGTSM+
Sbjct: 185 QRASFSSVGPEL--------DVMAPGVSICST-LPGNKY------------GAKSGTSMA 223
Query: 553 CPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAY 590
PH A AAL+ + H +W++ +RS+L T L +++
Sbjct: 224 SPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSF 261
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 21/98 (21%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMS 552
Q A+FSS GP L D++APGV I + +P N + SGTSM+
Sbjct: 185 QRASFSSVGPEL--------DVMAPGVSICST-LPGNKY------------GAKSGTSMA 223
Query: 553 CPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAY 590
PH A AAL+ + H +W++ +RS+L T L +++
Sbjct: 224 SPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSF 261
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 246 IGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPE 296
+GVAP A + KVL ++ + + ++ G++ AIA+ +D++++SL P
Sbjct: 82 LGVAPCASLYAVKVLGADG--SGQYSWIINGIEWAIANNMDVINMSLGGPS 130
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 21/98 (21%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMS 552
Q A+FSS GP L D++APGV I + +P N + SGTSM+
Sbjct: 185 QRASFSSVGPEL--------DVMAPGVSIXST-LPGNKY------------GAYSGTSMA 223
Query: 553 CPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAY 590
PH A AAL+ + H +W++ +RS+L T L +++
Sbjct: 224 SPHVAGAAALILSKHPNWTNTQVRSSLENTTTYLGDSF 261
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 21/98 (21%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMS 552
Q A+FSS GP L D++APGV I++ +P N + SGT+M+
Sbjct: 176 QRASFSSVGPEL--------DVMAPGVSIVST-LPGNKY------------GAKSGTAMA 214
Query: 553 CPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAY 590
PH A AAL+ + H +W++ +RS+L T L +++
Sbjct: 215 SPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSF 252
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 237 HFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPE 296
H + GT + VAP A + KVL ++ + + ++ G++ AIA+ +D++++SL P
Sbjct: 64 HGTHVAGTVLAVAPSASLYAVKVLGADG--SGQYSWIINGIEWAIANNMDVINMSLGGPS 121
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 21/98 (21%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMS 552
Q A+FSS GP L D++APGV I++ +P N + SGT+M+
Sbjct: 176 QRASFSSVGPEL--------DVMAPGVSIVST-LPGNKY------------GAKSGTAMA 214
Query: 553 CPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAY 590
PH A AAL+ + H +W++ +RS+L T L +++
Sbjct: 215 SPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSF 252
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 237 HFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPE 296
H + GT + VAP A + KVL ++ + + ++ G++ AIA+ +D++++SL P
Sbjct: 64 HGTHVAGTVLAVAPSASLYAVKVLGADG--SGQYSWIINGIEWAIANNMDVINMSLGGPS 121
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 21/98 (21%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMS 552
Q A+FSS GP L D++APGV I + +P N + SGTSM+
Sbjct: 185 QRASFSSVGPEL--------DVMAPGVSIXST-LPGNKY------------GAYSGTSMA 223
Query: 553 CPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAY 590
PH A AAL+ + H +W++ +RS+L T L +++
Sbjct: 224 SPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSF 261
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 21/98 (21%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMS 552
Q A+FSS GP L D++APGV I + +P N + SGTSM+
Sbjct: 185 QRASFSSVGPEL--------DVMAPGVSIQST-LPGNKY------------GAKSGTSMA 223
Query: 553 CPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAY 590
PH A AAL+ + H +W++ +RS+L T L +++
Sbjct: 224 SPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSF 261
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 246 IGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPE 296
+GVAP A + KVL ++ + + ++ G++ AIA+ +D++++SL P
Sbjct: 82 LGVAPCASLYAVKVLGADG--SGQYSWIINGIEWAIANNMDVINMSLGGPS 130
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 21/98 (21%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMS 552
Q A+FSS GP L D++APGV I + +P N + +GTSM+
Sbjct: 185 QRASFSSVGPEL--------DVMAPGVSIQST-LPGNKY------------GAYNGTSMA 223
Query: 553 CPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAY 590
PH A AAL+ + H +W++ +RS+L T L +++
Sbjct: 224 SPHVAGAAALILSKHPNWTNTQVRSSLQNTTTKLGDSF 261
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 21/98 (21%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMS 552
Q A+FSS GP L D++APGV I + +P N + +GTSM+
Sbjct: 185 QRASFSSVGPEL--------DVMAPGVSIQST-LPGNKY------------GAYNGTSMA 223
Query: 553 CPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAY 590
PH A AAL+ + H +W++ +RS+L T L +++
Sbjct: 224 SPHVAGAAALILSKHPNWTNTQVRSSLQNTTTKLGDSF 261
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 21/98 (21%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMS 552
Q A+FSS GP L D++APGV I + +P N + SGT M+
Sbjct: 176 QRASFSSVGPEL--------DVMAPGVSICST-LPGNKY------------GAKSGTXMA 214
Query: 553 CPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAY 590
PH A AAL+ + H +W++ +RS+L T L +++
Sbjct: 215 SPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSF 252
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 237 HFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPE 296
H + GT + VAP A + KVL ++ + + ++ G++ AIA+ +D++++SL P
Sbjct: 64 HGTHVAGTVLAVAPSASLYAVKVLGADG--SGQYSWIINGIEWAIANNMDVINMSLGGPS 121
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 21/98 (21%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMS 552
Q A+FSS GP L D++APGV I + +P N + SGT M+
Sbjct: 185 QRASFSSVGPEL--------DVMAPGVSIQST-LPGNKY------------GAKSGTXMA 223
Query: 553 CPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAY 590
PH A AAL+ + H +W++ +RS+L T L +++
Sbjct: 224 SPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSF 261
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 76/174 (43%), Gaps = 24/174 (13%)
Query: 447 PEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQIT--ILGTKPAPQVANFSSRGPSL 504
P V P ++ KDG L+K N +I F T +L T +++ FSS G L
Sbjct: 323 PNVDQXPAAFISRKDGLLLKD------NPQKTITFNATPKVLPTASGTKLSRFSSWG--L 374
Query: 505 RSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMSCPHAAAIAALVK 564
+ +KPDI APG DIL++ V NN + + SGTS S P A I L++
Sbjct: 375 TADGNIKPDIAAPGQDILSS-VANNKYAKL------------SGTSXSAPLVAGIXGLLQ 421
Query: 565 ATHR-DWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLDFGAGHINPNKA 617
+ + L VL ++ + D+ +P GAG ++ KA
Sbjct: 422 KQYETQYPDXTPSERLDLAKKVLXSSATALYDEDEKAYFSPRQQGAGAVDAKKA 475
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 21/98 (21%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMS 552
Q A+FSS GP L D++APGV I + +P N + +GTSM+
Sbjct: 185 QRASFSSVGPEL--------DVMAPGVSIQST-LPGNKY------------GAYNGTSMA 223
Query: 553 CPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAY 590
PH A AAL+ + H +W++ +RS+L T L +++
Sbjct: 224 SPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSF 261
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 21/98 (21%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMS 552
Q A+FSS GP L D++APGV I + +P N + +GTSM+
Sbjct: 185 QRASFSSVGPEL--------DVMAPGVSIQST-LPGNKY------------GAYNGTSMA 223
Query: 553 CPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAY 590
PH A AAL+ + H +W++ +RS+L T L +++
Sbjct: 224 SPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSF 261
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 246 IGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPE 296
+GVAP A + KVL ++ + + ++ G++ AIA+ +D++++SL P
Sbjct: 82 LGVAPSASLYAVKVLGADG--SGQYSWIINGIEWAIANNMDVINMSLGGPS 130
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 21/98 (21%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMS 552
Q A+FSS GP L D++APGV I + +P N + +GTSM+
Sbjct: 185 QRASFSSVGPEL--------DVMAPGVSIQST-LPGNKY------------GAYNGTSMA 223
Query: 553 CPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAY 590
PH A AAL+ + H +W++ +RS+L T L +++
Sbjct: 224 SPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSF 261
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 21/98 (21%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMS 552
Q A+FSS GP L D++APGV I + +P N + SGT M+
Sbjct: 173 QRASFSSVGPEL--------DVMAPGVSIWST-LPGNKY------------GAKSGTXMA 211
Query: 553 CPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAY 590
PH A AAL+ + H +W++ +RS+L T L +++
Sbjct: 212 SPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSF 249
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 237 HFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPE 296
H + GT + VAP A + KVL ++ + + ++ G++ AIA+ +D++++SL P
Sbjct: 61 HGTHVAGTVLAVAPSASLYAVKVLGADG--SGQYSWIINGIEWAIANNMDVINMSLGGPS 118
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 21/98 (21%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMS 552
Q A FSS GP L D++APGV I + +P + + SGTSM+
Sbjct: 176 QRAPFSSVGPEL--------DVMAPGVSICST-LPGGKYGAL------------SGTSMA 214
Query: 553 CPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAY 590
PH A AAL+ + H +W++ +RS+L TA L +++
Sbjct: 215 SPHVAGAAALILSKHPNWTNTQVRSSLENTATKLGDSF 252
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 237 HFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPE 296
H + GT + VAP A + KVL ++ + A+ ++ G++ AIA+ +D++++SL P
Sbjct: 64 HGTHVAGTVLAVAPSASLYAVKVLGADGSGQASW--IINGIEWAIANNMDVINMSLGSPS 121
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 21/98 (21%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMS 552
Q A+FSS GP L D++APGV I + +P N + SGT M+
Sbjct: 185 QRASFSSVGPEL--------DVMAPGVSIQST-LPGNKY------------GAYSGTXMA 223
Query: 553 CPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAY 590
PH A AAL+ + H +W++ +RS+L T L +++
Sbjct: 224 SPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSF 261
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 21/98 (21%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMS 552
Q A+FSS GP L D++APGV I + +P N + SGT M+
Sbjct: 185 QRASFSSVGPEL--------DVMAPGVSIQST-LPGNKY------------GAYSGTXMA 223
Query: 553 CPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAY 590
PH A AAL+ + H +W++ +RS+L T L +++
Sbjct: 224 SPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSF 261
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 246 IGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPE 296
+GVAP A + KVL ++ + + ++ G++ AIA+ +D++++SL P
Sbjct: 82 LGVAPCASLYAVKVLGADG--SGQYSWIINGIEWAIANNMDVINMSLGGPS 130
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 21/98 (21%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMS 552
Q A FSS GP L D++APGV I + +P + + SGT+M+
Sbjct: 176 QRAPFSSVGPEL--------DVMAPGVSICST-LPGGKYGAL------------SGTAMA 214
Query: 553 CPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAY 590
PH A AAL+ + H +W++ +RS+L TA L +++
Sbjct: 215 SPHVAGAAALILSKHPNWTNTQVRSSLENTATKLGDSF 252
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 237 HFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPE 296
H + GT + VAP A + KVL ++ + A+ ++ G++ AIA+ +D++++SL P
Sbjct: 64 HGTHVAGTVLAVAPSASLYAVKVLGADGSGQASW--IINGIEWAIANNMDVINMSLGSPS 121
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 21/98 (21%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMS 552
Q A+FSS GP L D++APGV I + +P N + +GT M+
Sbjct: 185 QRASFSSVGPEL--------DVMAPGVSIQST-LPGNKY------------GAYNGTXMA 223
Query: 553 CPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAY 590
PH A AAL+ + H +W++ +RS+L T L +++
Sbjct: 224 SPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSF 261
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 246 IGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPE 296
+GVAP A + KVL ++ + + ++ G++ AIA+ +D++++SL P
Sbjct: 82 LGVAPSASLYAVKVLGADG--SGQYSWIINGIEWAIANNMDVINMSLGGPS 130
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 21/98 (21%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMS 552
Q A+FSS GP L D++APGV I + +P N + +GT M+
Sbjct: 185 QRASFSSVGPEL--------DVMAPGVSIQST-LPGNKY------------GAYNGTXMA 223
Query: 553 CPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAY 590
PH A AAL+ + H +W++ +RS+L T L +++
Sbjct: 224 SPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSF 261
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 246 IGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPE 296
+GVAP A + KVL ++ + + ++ G++ AIA+ +D++++SL P
Sbjct: 82 LGVAPSASLYAVKVLGADG--SGQYSWIINGIEWAIANNMDVINMSLGGPS 130
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 21/98 (21%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMS 552
Q A+FSS GP L D++APGV I + +P N + +GTS +
Sbjct: 185 QRASFSSVGPEL--------DVMAPGVSIQST-LPGNKY------------GAYNGTSXA 223
Query: 553 CPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAY 590
PH A AAL+ + H +W++ +RS+L T L +++
Sbjct: 224 SPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSF 261
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 21/108 (19%)
Query: 483 ITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXX 542
I + A Q A+FSS G L D++APGV I + +P +
Sbjct: 175 IAVGAVNSANQRASFSSAGSEL--------DVMAPGVSIQST-LPGGTY----------- 214
Query: 543 XXXXSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAY 590
+GTSM+ PH A AAL+ + H W++A +R L +TA L +++
Sbjct: 215 -GAYNGTSMATPHVAGAAALILSKHPTWTNAQVRDRLESTATYLGSSF 261
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 23/126 (18%)
Query: 246 IGVAPMARIAMYKVLFSNDNLAAAETD-VLAGMDQAIADGVDIMSLSLAFP------ETT 298
+GVAP A + KVL D+ + + ++ G++ AI++ +D++++SL P +T
Sbjct: 82 LGVAPSASLYAVKVL---DSTGSGQYSWIINGIEWAISNNMDVINMSLGGPTGSTALKTV 138
Query: 299 FDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPW----ITAVGAGTVDREFAAH 354
D+ A+ GI VA +AGN G + G P AVGA + A+
Sbjct: 139 VDK---------AVSSGIVVAAAAGNEGSSGSTSTVGYPAKYPSTIAVGAVNSANQRASF 189
Query: 355 VTLGNE 360
+ G+E
Sbjct: 190 SSAGSE 195
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 21/94 (22%)
Query: 495 ANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMSCP 554
A+FS G L DI+APGV++ + + P + + + +GTSM+ P
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTY-PGSTYASL------------NGTSMATP 219
Query: 555 HAAAIAALVKATHRDWSSAAIRSALMTTADVLDN 588
H A +AALVK + WS+ IR+ L TA L N
Sbjct: 220 HVAGVAALVKQKNPSWSNVQIRNHLKNTATGLGN 253
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 11/107 (10%)
Query: 246 IGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPE--TTFDENP 303
+GVAP A + KVL ++ + + + + G++ A +G+ + +LSL P T ++
Sbjct: 80 LGVAPSAELYAVKVLGASG--SGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQ-- 135
Query: 304 IAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDRE 350
+A RG+ V ++GNSG SI A + A+ G D+
Sbjct: 136 ---AVNSATSRGVLVVAASGNSGAG--SISYPARYANAMAVGATDQN 177
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 21/98 (21%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMS 552
Q A+FSS G L D++APGV I + +P + +GT M+
Sbjct: 185 QRASFSSAGSEL--------DVMAPGVSIQST-LPGGTY------------GAYNGTCMA 223
Query: 553 CPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAY 590
PH A AAL+ + H W++A +R L +TA L N++
Sbjct: 224 TPHVAGAAALILSKHPTWTNAQVRDRLESTATYLGNSF 261
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 23/126 (18%)
Query: 246 IGVAPMARIAMYKVLFSNDNLAAAETD-VLAGMDQAIADGVDIMSLSLAFP------ETT 298
+GV+P A + KVL D+ + + ++ G++ AI++ +D++++SL P +T
Sbjct: 82 LGVSPSASLYAVKVL---DSTGSGQYSWIINGIEWAISNNMDVINMSLGGPTGSTALKTV 138
Query: 299 FDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPW----ITAVGAGTVDREFAAH 354
D+ A+ GI VA +AGN G + G P AVGA + A+
Sbjct: 139 VDK---------AVSSGIVVAAAAGNEGSSGSTSTVGYPAKYPSTIAVGAVNSSNQRASF 189
Query: 355 VTLGNE 360
+ G+E
Sbjct: 190 SSAGSE 195
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 21/98 (21%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMS 552
Q A+FSS G L D++APGV I + +P + +GT M+
Sbjct: 185 QRASFSSVGSEL--------DVMAPGVSIQST-LPGGTY------------GAYNGTXMA 223
Query: 553 CPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAY 590
PH A AAL+ + H W++A +R L +TA L N++
Sbjct: 224 TPHVAGAAALILSKHPTWTNAQVRDRLESTATYLGNSF 261
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 23/126 (18%)
Query: 246 IGVAPMARIAMYKVLFSNDNLAAAETD-VLAGMDQAIADGVDIMSLSLAFP------ETT 298
+GVAP A + KVL D+ + + ++ G++ AI++ +D++++SL P +T
Sbjct: 82 LGVAPSASLYAVKVL---DSTGSGQYSWIINGIEWAISNNMDVINMSLGGPTGSTALKTV 138
Query: 299 FDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPW----ITAVGAGTVDREFAAH 354
D+ A+ GI VA +AGN G + G P AVGA + A+
Sbjct: 139 VDK---------AVSSGIVVAAAAGNEGSSGSTSTVGYPAKYPSTIAVGAVNSSNQRASF 189
Query: 355 VTLGNE 360
++G+E
Sbjct: 190 SSVGSE 195
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 73/140 (52%), Gaps = 13/140 (9%)
Query: 246 IGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPETTFDENPIA 305
+GVAP +++Y + N + + + + +++G++ A +G+D++++SL P +
Sbjct: 81 LGVAP--NVSLYAIKVLNSSGSGSYSAIVSGIEWATQNGLDVINMSLGGPSGSTALKQAV 138
Query: 306 IGAFAALKRGIFVACSAGNSGPRPYSIRNGAPW----ITAVGAGTVDREFAAHVTLGNE- 360
A+A+ GI V +AGNSG G P + AVGA ++ A+ ++G+E
Sbjct: 139 DKAYAS---GIVVVAAAGNSGNSGSQNTIGYPAKYDSVIAVGAVDSNKNRASFSSVGSEL 195
Query: 361 ELTVIGKSV---YPENLFVS 377
E+ G SV YP N + S
Sbjct: 196 EVMAPGVSVYSTYPSNTYTS 215
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 21/96 (21%)
Query: 495 ANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMSCP 554
A+FSS G L +++APGV + + + P+N + + GTSM+ P
Sbjct: 186 ASFSSVGSEL--------EVMAPGVSVYSTY-PSNTYTSLN------------GTSMASP 224
Query: 555 HAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAY 590
H A AAL+ + + S++ +R+ L +TA L +++
Sbjct: 225 HVAGAAALILSKYPTLSASQVRNRLSSTATNLGDSF 260
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 49/99 (49%), Gaps = 23/99 (23%)
Query: 495 ANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMSCP 554
A+FS G L DI+APGV++ + + P + + + +GTSM+ P
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTY-PGSTYASL------------NGTSMATP 219
Query: 555 HAAAIAALVKATHRDWSSAAIRSALMTTADVLD--NAYG 591
H A AALVK + WS+ IR+ L TA L N YG
Sbjct: 220 HVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTNLYG 258
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 11/107 (10%)
Query: 246 IGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPE--TTFDENP 303
+GVAP A + KVL ++ + + + + G++ A +G+ + +LSL P T ++
Sbjct: 80 LGVAPNAELYAVKVLGASG--SGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQ-- 135
Query: 304 IAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDRE 350
+A RG+ V ++GNSG SI A + A+ G D+
Sbjct: 136 ---AVNSATSRGVLVVAASGNSGAG--SISYPARYANAMAVGATDQN 177
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 49/99 (49%), Gaps = 23/99 (23%)
Query: 495 ANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMSCP 554
A+FS G L DI+APGV++ + + P + + + +GTSM+ P
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTY-PGSTYASL------------NGTSMATP 219
Query: 555 HAAAIAALVKATHRDWSSAAIRSALMTTADVLD--NAYG 591
H A AALVK + WS+ IR+ L TA L N YG
Sbjct: 220 HVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTNLYG 258
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 11/107 (10%)
Query: 246 IGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPE--TTFDENP 303
+GVAP A + KVL ++ + + + G++ A +G+ + +LSL P T ++
Sbjct: 80 LGVAPNAELYAVKVLGASG--GGSNSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQ-- 135
Query: 304 IAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDRE 350
+A RG+ V ++GNSG SI A + A+ G D+
Sbjct: 136 ---AVNSATSRGVLVVAASGNSGAG--SISYPARYANAMAVGATDQN 177
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 49/99 (49%), Gaps = 23/99 (23%)
Query: 495 ANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMSCP 554
A+FS G L DI+APGV++ + + P + + + +GTSM+ P
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTY-PGSTYASL------------NGTSMATP 219
Query: 555 HAAAIAALVKATHRDWSSAAIRSALMTTADVLD--NAYG 591
H A AALVK + WS+ IR+ L TA L N YG
Sbjct: 220 HVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTNLYG 258
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 23/99 (23%)
Query: 495 ANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMSCP 554
A+FS G L DI+APGV++ + + P + + + GTSM+ P
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTY-PGSTYASLN------------GTSMATP 219
Query: 555 HAAAIAALVKATHRDWSSAAIRSALMTTADVLD--NAYG 591
H A AALVK + WS+ IR+ L TA L N YG
Sbjct: 220 HVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTNLYG 258
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 11/107 (10%)
Query: 246 IGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPE--TTFDENP 303
+GVAP A + KVL ++ + + + + G++ A +G+ + +LSL P T ++
Sbjct: 80 LGVAPSAELYAVKVLGASG--SGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQ-- 135
Query: 304 IAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDRE 350
+A RG+ V ++GNSG SI A + A+ G D+
Sbjct: 136 ---AVNSATSRGVLVVAASGNSGAG--SISYPARYANAMAVGATDQN 177
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 23/99 (23%)
Query: 495 ANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMSCP 554
A+FS G L DI+APGV++ + + P + + + GTSM+ P
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTY-PGSTYASLN------------GTSMATP 219
Query: 555 HAAAIAALVKATHRDWSSAAIRSALMTTADVLD--NAYG 591
H A AALVK + WS+ IR+ L TA L N YG
Sbjct: 220 HVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTNLYG 258
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 11/107 (10%)
Query: 246 IGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPE--TTFDENP 303
+GVAP A + KVL ++ A + + G++ A +G+ + +LSL P T ++
Sbjct: 80 LGVAPSAELYAVKVLGADGR--GAISSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQ-- 135
Query: 304 IAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDRE 350
+A RG+ V ++GNSG SI A + A+ G D+
Sbjct: 136 ---AVNSATSRGVLVVAASGNSGAS--SISYPARYANAMAVGATDQN 177
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 23/99 (23%)
Query: 495 ANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMSCP 554
A+FS G L DI+APGV++ + + P + + + +GT M+ P
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTY-PGSTYASL------------NGTXMATP 219
Query: 555 HAAAIAALVKATHRDWSSAAIRSALMTTADVLD--NAYG 591
H A AALVK + WS+ IR+ L TA L N YG
Sbjct: 220 HVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTNLYG 258
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 21/96 (21%)
Query: 495 ANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMSCP 554
A+FSS G L +++APG + + + P N + + GTSM+ P
Sbjct: 187 ASFSSVGAEL--------EVMAPGAGVYSTY-PTNTYATLN------------GTSMASP 225
Query: 555 HAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAY 590
H A AAL+ + H + S++ +R+ L +TA L +++
Sbjct: 226 HVAGAAALILSKHPNLSASQVRNRLSSTATYLGSSF 261
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 23/99 (23%)
Query: 495 ANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMSCP 554
A+FS G L DI+APGV++ + + P + + + +GT M+ P
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTY-PGSTYASL------------NGTXMATP 219
Query: 555 HAAAIAALVKATHRDWSSAAIRSALMTTADVLD--NAYG 591
H A AALVK + WS+ IR+ L TA L N YG
Sbjct: 220 HVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTNLYG 258
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 11/107 (10%)
Query: 246 IGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPE--TTFDENP 303
+GVAP A + KVL ++ + + + + G++ A +G+ + +LSL P T ++
Sbjct: 80 LGVAPNAELYAVKVLGASG--SGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQ-- 135
Query: 304 IAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDRE 350
+A RG+ V ++GNSG SI A + A+ G D+
Sbjct: 136 ---AVNSATSRGVLVVAASGNSGAG--SISYPARYANAMAVGATDQN 177
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 21/96 (21%)
Query: 495 ANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMSCP 554
A+FSS G L +++APG + + + P N + + GTSM+ P
Sbjct: 187 ASFSSVGAEL--------EVMAPGAGVYSTY-PTNTYATLN------------GTSMASP 225
Query: 555 HAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAY 590
H A AAL+ + H + S++ +R+ L +TA L +++
Sbjct: 226 HVAGAAALILSKHPNLSASQVRNRLSSTATYLGSSF 261
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 21/96 (21%)
Query: 495 ANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMSCP 554
A+FSS G L +++APG + + + P N + + GTSM+ P
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTY-PTNTYATLN------------GTSMASP 224
Query: 555 HAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAY 590
H A AAL+ + H + S++ +R+ L +TA L +++
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTATYLGSSF 260
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 21/96 (21%)
Query: 495 ANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMSCP 554
A+FSS G L +++APG + + + P N + + GTSM+ P
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTY-PTNTYATLN------------GTSMASP 224
Query: 555 HAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAY 590
H A AAL+ + H + S++ +R+ L +TA L +++
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTATYLGSSF 260
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 21/96 (21%)
Query: 495 ANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMSCP 554
A+FSS G L +++APG + + + P N + + GTSM+ P
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTY-PTNTYATLN------------GTSMASP 224
Query: 555 HAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAY 590
H A AAL+ + H + S++ +R+ L +TA L +++
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTATYLGSSF 260
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 47/99 (47%), Gaps = 23/99 (23%)
Query: 495 ANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMSCP 554
A+FS G L DI+APGV++ + + P + + + GT M+ P
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTY-PGSTYASLN------------GTXMATP 219
Query: 555 HAAAIAALVKATHRDWSSAAIRSALMTTADVLD--NAYG 591
H A AALVK + WS+ IR+ L TA L N YG
Sbjct: 220 HVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTNLYG 258
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 11/107 (10%)
Query: 246 IGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPE--TTFDENP 303
+GVAP A + KVL ++ + A + + G++ A +G+ + +LSL P T ++
Sbjct: 80 LGVAPSAELYAVKVLGASG--SGAISSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQ-- 135
Query: 304 IAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDRE 350
+A RG+ V ++GN G SI A + A+ G D+
Sbjct: 136 ---AVNSATSRGVLVVAASGNEGAG--SIDYPARYANAMAVGATDQN 177
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 47/99 (47%), Gaps = 23/99 (23%)
Query: 495 ANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMSCP 554
A+FS G L DI+APGV++ + + P + + + GT M+ P
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTY-PGSTYASLN------------GTXMATP 219
Query: 555 HAAAIAALVKATHRDWSSAAIRSALMTTADVLD--NAYG 591
H A AALVK + WS+ IR+ L TA L N YG
Sbjct: 220 HVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTNLYG 258
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 11/107 (10%)
Query: 246 IGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPE--TTFDENP 303
+GVAP A + KVL ++ + A + + G++ A +G+ + +LSL P T ++
Sbjct: 80 LGVAPSAELYAVKVLGASG--SGAISSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQ-- 135
Query: 304 IAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDRE 350
+A RG+ V ++GNSG SI A + A+ G D+
Sbjct: 136 ---AVNSATSRGVLVVAASGNSGAG--SISYPARYANAMAVGATDQN 177
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 21/96 (21%)
Query: 495 ANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMSCP 554
A+FSS G L +++APG + + + P N + + GTSM+ P
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTY-PTNTYATLN------------GTSMASP 224
Query: 555 HAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAY 590
H A AAL+ + H + S++ +R+ L +TA L +++
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTATYLGSSF 260
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 23/94 (24%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMS 552
++A+FS+ G W+ D++APGVDI++ N SGTSM+
Sbjct: 190 RLASFSNYGT-----WV---DVVAPGVDIVSTITGNR-------------YAYMSGTSMA 228
Query: 553 CPHAAAIAALVKATHRDWSSAAIRSALMTTADVL 586
PH A +AAL+ + R+ + IR A+ TAD +
Sbjct: 229 SPHVAGLAALLASQGRN--NIEIRQAIEQTADKI 260
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 21/96 (21%)
Query: 495 ANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMSCP 554
A+FSS G L +++APG + + + P N + + GT M+ P
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTY-PTNTYATLN------------GTXMASP 224
Query: 555 HAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAY 590
H A AAL+ + H + S++ +R+ L +TA L +++
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTATYLGSSF 260
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 43/120 (35%)
Query: 494 VANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMSC 553
+A+FS+R +P++ APGVDIL+ + P++ ++ + GT+M+
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTY-PDDSYETLM------------GTAMAT 327
Query: 554 PHAAAIAALVKA-------------THRDWSSAAIRSALMTTADVL-------DNAYGMI 593
PH + + AL++A T D S +R L TAD L D YG++
Sbjct: 328 PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADALGPTGWDADYGYGVV 387
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 7/54 (12%)
Query: 547 SGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVL-----DN--AYGMI 593
+GTSM+ PH + +A LV + H + S++ +R+AL TAD L DN YGMI
Sbjct: 366 NGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLSVAGRDNQTGYGMI 419
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 43/120 (35%)
Query: 494 VANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMSC 553
+A+FS+R +P++ APGVDIL+ + P++ ++ + GT+M+
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTY-PDDSYETLM------------GTAMAT 327
Query: 554 PHAAAIAALVKA-------------THRDWSSAAIRSALMTTADVL-------DNAYGMI 593
PH + + AL++A T D S +R L TAD L D YG++
Sbjct: 328 PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGWDADYGYGVV 387
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 43/120 (35%)
Query: 494 VANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMSC 553
+A+FS+R +P++ APGVDIL+ + P++ ++ + GT+M+
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTY-PDDSYETLM------------GTAMAT 327
Query: 554 PHAAAIAALVKA-------------THRDWSSAAIRSALMTTADVL-------DNAYGMI 593
PH + + AL++A T D S +R L TAD L D YG++
Sbjct: 328 PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGWDADYGYGVV 387
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 25/119 (21%)
Query: 246 IGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAI--------------------ADGV 285
+GVAP +I +VL + + + +D+ G++QAI AD
Sbjct: 171 VGVAPGVQIYSVRVLDARGS--GSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDADAA 228
Query: 286 DIMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGA 344
+++S+SL P D++ + A GI + ++GN G S P + AVGA
Sbjct: 229 EVISMSLGGPA---DDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 284
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 43/120 (35%)
Query: 494 VANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMSC 553
+A+FS+R +P++ APGVDIL+ + P++ ++ + GT+M+
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTY-PDDSYETLM------------GTAMAT 327
Query: 554 PHAAAIAALVKA-------------THRDWSSAAIRSALMTTADVL-------DNAYGMI 593
PH + + AL++A T D S +R L TAD L D YG++
Sbjct: 328 PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGWDADYGYGVV 387
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 43/120 (35%)
Query: 494 VANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMSC 553
+A+FS+R +P++ APGVDIL+ + P++ ++ + GT+M+
Sbjct: 288 IASFSNR----------QPEVSAPGVDILSTY-PDDSYETLM------------GTAMAT 324
Query: 554 PHAAAIAALVKA-------------THRDWSSAAIRSALMTTADVL-------DNAYGMI 593
PH + + AL++A T D S +R L TAD L D YG++
Sbjct: 325 PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGWDADYGYGVV 384
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 43/120 (35%)
Query: 494 VANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMSC 553
+A+FS+R +P++ APGVDIL+ + P++ ++ + GT+M+
Sbjct: 213 IASFSNR----------QPEVSAPGVDILSTY-PDDSYETLM------------GTAMAT 249
Query: 554 PHAAAIAALVKA-------------THRDWSSAAIRSALMTTADVL-------DNAYGMI 593
PH + + AL++A T D S +R L TAD L D YG++
Sbjct: 250 PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGWDADYGYGVV 309
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 43/120 (35%)
Query: 494 VANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMSC 553
+A+FS+R +P++ APGVDIL+ + P++ ++ + GT+M+
Sbjct: 211 IASFSNR----------QPEVSAPGVDILSTY-PDDSYETLM------------GTAMAT 247
Query: 554 PHAAAIAALVKA-------------THRDWSSAAIRSALMTTADVL-------DNAYGMI 593
PH + + AL++A T D S +R L TAD L D YG++
Sbjct: 248 PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGWDADYGYGVV 307
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 43/120 (35%)
Query: 494 VANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMSC 553
+A+FS+R +P++ APGVDIL+ + P++ ++ + GT+M+
Sbjct: 222 IASFSNR----------QPEVSAPGVDILSTY-PDDSYETLM------------GTAMAT 258
Query: 554 PHAAAIAALVKA-------------THRDWSSAAIRSALMTTADVL-------DNAYGMI 593
PH + + AL++A T D S +R L TAD L D YG++
Sbjct: 259 PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGWDADYGYGVV 318
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 43/120 (35%)
Query: 494 VANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMSC 553
+A+FS+R +P++ APGVDIL+ + P++ ++ + GT+M+
Sbjct: 222 IASFSNR----------QPEVSAPGVDILSTY-PDDSYETLM------------GTAMAT 258
Query: 554 PHAAAIAALVKA-------------THRDWSSAAIRSALMTTADVL-------DNAYGMI 593
PH + + AL++A T D S +R L TAD L D YG++
Sbjct: 259 PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGWDADYGYGVV 318
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 17/99 (17%)
Query: 493 QVANFSSRG-PSLRSPWILKP---DILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSG 548
+VA+FSSRG ++++ +I APG + + W SG
Sbjct: 201 RVADFSSRGHKRTAGDYVIQKGDVEISAPGAAVYSTWFDGG-------------YATISG 247
Query: 549 TSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLD 587
TSM+ PHAA +AA + A S+ +R L T A V D
Sbjct: 248 TSMASPHAAGLAAKIWAQSPAASNVDVRGELQTRASVND 286
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 247 GVAPMARIAMYKVLFSN-----DNLAAAETDVLAGMDQAIADGVDIMSLSLAFPETTFDE 301
GVAP A + YKVL + D++A A + DQA A ++ ++++ +
Sbjct: 91 GVAPEADLWAYKVLGDDGSGYADDIAEA---IRHAGDQATALNTKVV-INMSLGSSGE-S 145
Query: 302 NPIAIGAFAALKRGIFVACSAGNSGPRPYSI 332
+ I A +G+ + +AGNSGP+P SI
Sbjct: 146 SLITNAVDYAYDKGVLIIAAAGNSGPKPGSI 176
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 43/120 (35%)
Query: 494 VANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMSC 553
+A+FS+R +P++ APGVDIL+ + P++ ++ + GT M+
Sbjct: 211 IASFSNR----------QPEVSAPGVDILSTY-PDDSYETLM------------GTXMAT 247
Query: 554 PHAAAIAALVKA-------------THRDWSSAAIRSALMTTADVL-------DNAYGMI 593
PH + + AL++A T D S +R L TAD L D YG++
Sbjct: 248 PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGWDADYGYGVV 307
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 43/120 (35%)
Query: 494 VANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMSC 553
+A+FS+R +P++ APGVDIL+ + P++ ++ + GT M+
Sbjct: 211 IASFSNR----------QPEVSAPGVDILSTY-PDDSYETLM------------GTCMAT 247
Query: 554 PHAAAIAALVKA-------------THRDWSSAAIRSALMTTADVL-------DNAYGMI 593
PH + + AL++A T D S +R L TAD L D YG++
Sbjct: 248 PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGWDADYGYGVV 307
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 17/99 (17%)
Query: 493 QVANFSSRG-PSLRSPWILKP---DILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSG 548
+VA++SSRG S ++++ +I APG + + W N + I SG
Sbjct: 202 RVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWY-NGGYNTI------------SG 248
Query: 549 TSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLD 587
TSM+ PH + +AA + A + S+ +RS L A +D
Sbjct: 249 TSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVD 287
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 12/86 (13%)
Query: 247 GVAPMARIAMYKVLFSN-----DNLAAAETDVLAGMDQAIADGVD-IMSLSLAFPETTFD 300
GVAP A + YKVL + D++AAA + DQA A G I+S+SL ++ +
Sbjct: 92 GVAPDADLWAYKVLLDSGSGYSDDIAAA---IRHAADQATATGTKTIISMSLG---SSAN 145
Query: 301 ENPIAIGAFAALKRGIFVACSAGNSG 326
+ I+ A +G+ + +AGNSG
Sbjct: 146 NSLISSAVNYAYSKGVLIVAAAGNSG 171
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 51/119 (42%), Gaps = 28/119 (23%)
Query: 483 ITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXX 542
IT+ T ++FS+ G L DI APG I ++W +N
Sbjct: 176 ITVGSTTSNDSRSSFSNYGTCL--------DIYAPGSSITSSWYTSN-----------SA 216
Query: 543 XXXXSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMT--TADVLDNAYGMITDKSTG 599
SGTSM+ PH A +AAL + + S A + + L T TAD +TD TG
Sbjct: 217 TNTISGTSMASPHVAGVAALYLDENPNLSPAQVTNLLKTRATAD-------KVTDAKTG 268
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 493 QVANFSSRG-PSLRSPWILKP---DILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSG 548
+VA++SSRG S ++++ +I APG + + W N + I SG
Sbjct: 202 RVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWY-NGGYNTI------------SG 248
Query: 549 TSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLD 587
T M+ PH + +AA + A + S+ +RS L A +D
Sbjct: 249 TXMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVD 287
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 12/86 (13%)
Query: 247 GVAPMARIAMYKVLFSN-----DNLAAAETDVLAGMDQAIADGVD-IMSLSLAFPETTFD 300
GVAP A + YKVL + D++AAA + DQA A G I+S+SL ++ +
Sbjct: 92 GVAPDADLWAYKVLLDSGSGYSDDIAAA---IRHAADQATATGTKTIISMSLG---SSAN 145
Query: 301 ENPIAIGAFAALKRGIFVACSAGNSG 326
+ I+ A +G+ + +AGNSG
Sbjct: 146 NSLISSAVNYAYSKGVLIVAAAGNSG 171
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 13/64 (20%)
Query: 513 DILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMSCPHAAAIAALVKATHRDWSS 572
DI PG DIL+ W+ + SGTSM+ PH A +AA + + ++
Sbjct: 200 DIFGPGTDILSTWIGGS-------------TRSISGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 573 AAIR 576
+A R
Sbjct: 247 SACR 250
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 23/104 (22%)
Query: 483 ITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXX 542
I + T ++FS+ G W+ D+ APG I + + P + + +
Sbjct: 179 IAVASTDQNDNKSSFSTYGS-----WV---DVAAPGSSIYSTY-PTSTYASL-------- 221
Query: 543 XXXXSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVL 586
SGTSM+ PH A +A L+ + R S++ IR+A+ TAD +
Sbjct: 222 ----SGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTADKI 259
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 547 SGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVL 586
SGTSM+ PH A +A L+ + R S++ IR+A+ TAD +
Sbjct: 222 SGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTADKI 259
>pdb|4H6V|A Chain A, Structure Of Patellamide Maturation Protease Pata
Length = 306
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 4/109 (3%)
Query: 238 FGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPET 297
FG + + G+AP R + +FS+D + D+ G+++A+ G I+++S T
Sbjct: 70 FGQPETSVPGIAPQCR-GLIVPIFSDDRRRITQLDLARGIERAVNAGAHIINIS-GGELT 127
Query: 298 TFDENPIAIGAFAALKR--GIFVACSAGNSGPRPYSIRNGAPWITAVGA 344
F E + +L R + + +AGN+G + P + AVGA
Sbjct: 128 DFGEADGWLENAVSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGA 176
>pdb|3ZXX|A Chain A, Structure Of Self-cleaved Protease Domain Of Pata
Length = 307
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 4/109 (3%)
Query: 238 FGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPET 297
FG + + G+AP R + +FS+D + D+ G+++A+ G I+++S T
Sbjct: 79 FGQPETSVPGIAPQCR-GLIVPIFSDDRRRITQLDLARGIERAVNAGAHIINIS-GGELT 136
Query: 298 TFDENPIAIGAFAALKR--GIFVACSAGNSGPRPYSIRNGAPWITAVGA 344
F E + +L R + + +AGN+G + P + AVGA
Sbjct: 137 DFGEADGWLENAVSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGA 185
>pdb|3ZXY|A Chain A, Structure Of S218a Mutant Of The Protease Domain Of Pata
Length = 282
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 4/109 (3%)
Query: 238 FGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPET 297
FG + + G+AP R + +FS+D + D+ G+++A+ G I+++S T
Sbjct: 60 FGQPETSVPGIAPQCR-GLIVPIFSDDRRRITQLDLARGIERAVNAGAHIINIS-GGELT 117
Query: 298 TFDENPIAIGAFAALKR--GIFVACSAGNSGPRPYSIRNGAPWITAVGA 344
F E + +L R + + +AGN+G + P + AVGA
Sbjct: 118 DFGEADGWLENAVSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGA 166
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 13/64 (20%)
Query: 513 DILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMSCPHAAAIAALVKATHRDWSS 572
DI PG IL+ W+ + SGTSM+ PH A +AA + + ++
Sbjct: 200 DIFGPGTSILSTWIGGS-------------TRSISGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 573 AAIR 576
+A R
Sbjct: 247 SACR 250
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAA 524
VA FSSRGP+ +KPD++APG IL+A
Sbjct: 201 HVAQFSSRGPTKDGR--IKPDVMAPGTFILSA 230
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 13/64 (20%)
Query: 513 DILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMSCPHAAAIAALVKATHRDWSS 572
DI PG IL+ W+ + SGTSM+ PH A +AA + + ++
Sbjct: 200 DIFGPGTSILSTWIGGS-------------TRSISGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 573 AAIR 576
+A R
Sbjct: 247 SACR 250
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 493 QVANFSSRGPSLRSPWILKPDILAPGVDILAA 524
VA FSSRGP+ +KPD++APG IL+A
Sbjct: 201 HVAQFSSRGPTKDGR--IKPDVMAPGTFILSA 230
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 479 IKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRXXX 538
+ +T+ T + A+FS+ G + D+ APG I +AW ++
Sbjct: 170 VAEALTVGATTSSDARASFSNYGSCV--------DLFAPGASIPSAWYTSD--------- 212
Query: 539 XXXXXXXXSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTA 583
+GTSM+ PH A +AAL + + A++ SA++ A
Sbjct: 213 --TATQTLNGTSMATPHVAGVAALYLEQNPSATPASVASAILNGA 255
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 10/74 (13%)
Query: 513 DILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMSCPHAAAIAALV----KATHR 568
D+ APG DIL+ V + +P+ +GTSM+ PH + +AALV + ++
Sbjct: 245 DLAAPGQDILST-VDSGTRRPV-----SDAYSFMAGTSMATPHVSGVAALVISAANSVNK 298
Query: 569 DWSSAAIRSALMTT 582
+ + A ++ L++T
Sbjct: 299 NLTPAELKDVLVST 312
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 10/74 (13%)
Query: 513 DILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMSCPHAAAIAALV----KATHR 568
D+ APG DIL+ V + +P+ +GTSM+ PH + +AALV + ++
Sbjct: 245 DLAAPGQDILST-VDSGTRRPV-----SDAYSFMAGTSMATPHVSGVAALVISAANSVNK 298
Query: 569 DWSSAAIRSALMTT 582
+ + A ++ L++T
Sbjct: 299 NLTPAELKDVLVST 312
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 10/74 (13%)
Query: 513 DILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMSCPHAAAIAALV----KATHR 568
D+ APG DIL+ V + +P+ +GTSM+ PH + +AALV + ++
Sbjct: 245 DLAAPGQDILST-VDSGTRRPV-----SDAYSFMAGTSMATPHVSGVAALVISAANSVNK 298
Query: 569 DWSSAAIRSALMTT 582
+ + A ++ L++T
Sbjct: 299 NLTPAELKDVLVST 312
>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1S2N|B Chain B, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|A Chain A, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|B Chain B, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
Length = 284
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 13/55 (23%)
Query: 508 WILKPDILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMSCPHAAAIAAL 562
W D+ APG I +AW + ++ I SGTSM+ PH A +AAL
Sbjct: 191 WGSCVDLFAPGSQIKSAWY-DGGYKTI------------SGTSMATPHVAGVAAL 232
>pdb|3F7M|A Chain A, Crystal Structure Of Apo Cuticle-Degrading Protease
(Ver112) From Verticillium Psalliotae
Length = 279
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 13/51 (25%)
Query: 513 DILAPGVDILAAWVPNNPWQPIRXXXXXXXXXXXSGTSMSCPHAAAIAALV 563
DI APG I + W+ SGTSM+ PH A +AA +
Sbjct: 201 DIFAPGTSITSTWIGGRT-------------NTISGTSMATPHIAGLAAYL 238
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,364,803
Number of Sequences: 62578
Number of extensions: 958076
Number of successful extensions: 2631
Number of sequences better than 100.0: 100
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 2430
Number of HSP's gapped (non-prelim): 196
length of query: 755
length of database: 14,973,337
effective HSP length: 106
effective length of query: 649
effective length of database: 8,340,069
effective search space: 5412704781
effective search space used: 5412704781
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)