Query 037455
Match_columns 755
No_of_seqs 462 out of 3162
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 12:27:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037455.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037455hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 7.2E-53 1.6E-57 451.0 30.7 305 111-584 1-307 (307)
2 PTZ00262 subtilisin-like prote 100.0 4.1E-50 8.9E-55 445.4 22.2 297 120-622 294-616 (639)
3 cd07479 Peptidases_S8_SKI-1_li 100.0 4E-49 8.7E-54 409.3 25.2 244 131-587 1-254 (255)
4 cd07497 Peptidases_S8_14 Pepti 100.0 5.5E-49 1.2E-53 417.1 25.2 287 137-583 1-311 (311)
5 cd05562 Peptidases_S53_like Pe 100.0 3.7E-49 8E-54 412.4 23.5 270 134-619 1-274 (275)
6 cd07475 Peptidases_S8_C5a_Pept 100.0 3.8E-48 8.3E-53 422.2 28.5 312 130-619 2-346 (346)
7 cd07478 Peptidases_S8_CspA-lik 100.0 1.7E-47 3.7E-52 425.9 30.8 406 135-610 1-455 (455)
8 cd07489 Peptidases_S8_5 Peptid 100.0 1.7E-47 3.8E-52 410.6 27.4 294 128-621 3-300 (312)
9 cd07476 Peptidases_S8_thiazoli 100.0 1.6E-46 3.4E-51 391.6 25.3 248 130-588 2-254 (267)
10 cd07474 Peptidases_S8_subtilis 100.0 2.4E-45 5.2E-50 391.5 29.1 290 137-617 1-295 (295)
11 cd07483 Peptidases_S8_Subtilis 100.0 1.8E-45 3.9E-50 389.7 25.1 269 138-584 1-291 (291)
12 cd05561 Peptidases_S8_4 Peptid 100.0 1.7E-45 3.6E-50 378.7 23.8 237 140-610 1-239 (239)
13 cd04857 Peptidases_S8_Tripepti 100.0 8.2E-45 1.8E-49 391.8 28.2 223 214-586 182-412 (412)
14 cd07493 Peptidases_S8_9 Peptid 100.0 5.9E-45 1.3E-49 381.0 25.3 246 139-584 1-261 (261)
15 cd07481 Peptidases_S8_Bacillop 100.0 1.2E-44 2.6E-49 379.2 25.2 247 137-584 1-264 (264)
16 KOG1153 Subtilisin-related pro 100.0 7.2E-45 1.6E-49 375.7 18.5 334 28-584 78-461 (501)
17 cd07485 Peptidases_S8_Fervidol 100.0 7.5E-44 1.6E-48 375.1 25.4 264 129-582 1-273 (273)
18 cd07487 Peptidases_S8_1 Peptid 100.0 2E-43 4.4E-48 370.5 27.0 257 137-584 1-264 (264)
19 cd04847 Peptidases_S8_Subtilis 100.0 2.7E-43 5.8E-48 374.4 20.5 266 140-584 1-291 (291)
20 cd04077 Peptidases_S8_PCSK9_Pr 100.0 1.4E-42 3.1E-47 361.9 24.6 233 130-585 17-255 (255)
21 cd07496 Peptidases_S8_13 Pepti 100.0 2.5E-42 5.3E-47 365.8 25.5 206 213-582 67-285 (285)
22 cd07484 Peptidases_S8_Thermita 100.0 2.6E-42 5.6E-47 361.2 25.2 242 127-586 18-259 (260)
23 cd07490 Peptidases_S8_6 Peptid 100.0 3.1E-42 6.7E-47 359.4 25.5 253 139-584 1-254 (254)
24 cd07494 Peptidases_S8_10 Pepti 100.0 5.2E-42 1.1E-46 363.1 22.9 252 127-588 10-287 (298)
25 cd04842 Peptidases_S8_Kp43_pro 100.0 1.5E-41 3.2E-46 362.0 26.0 279 133-584 2-293 (293)
26 cd07480 Peptidases_S8_12 Pepti 100.0 2.5E-41 5.4E-46 360.0 24.2 265 132-615 2-296 (297)
27 cd07498 Peptidases_S8_15 Pepti 100.0 2.9E-41 6.4E-46 349.4 22.7 240 140-582 1-242 (242)
28 cd07473 Peptidases_S8_Subtilis 100.0 1.8E-40 4E-45 347.1 25.8 250 138-584 2-259 (259)
29 cd04843 Peptidases_S8_11 Pepti 100.0 6.7E-41 1.5E-45 350.6 21.1 244 128-584 5-277 (277)
30 cd07477 Peptidases_S8_Subtilis 100.0 3.8E-40 8.1E-45 338.3 24.4 227 139-582 1-229 (229)
31 cd07482 Peptidases_S8_Lantibio 100.0 2.6E-40 5.7E-45 352.6 23.9 151 139-329 1-159 (294)
32 PF00082 Peptidase_S8: Subtila 100.0 2.3E-41 4.9E-46 358.5 14.5 274 141-619 1-282 (282)
33 cd07491 Peptidases_S8_7 Peptid 100.0 2.6E-40 5.6E-45 340.6 20.7 158 137-345 2-169 (247)
34 cd07492 Peptidases_S8_8 Peptid 100.0 2.9E-39 6.3E-44 329.9 23.5 222 139-584 1-222 (222)
35 cd04059 Peptidases_S8_Protein_ 100.0 1.4E-39 3E-44 347.4 19.0 248 127-584 28-297 (297)
36 cd04848 Peptidases_S8_Autotran 100.0 3.5E-38 7.7E-43 331.2 22.6 243 136-584 1-267 (267)
37 KOG4266 Subtilisin kexin isozy 100.0 5.5E-37 1.2E-41 324.8 24.7 354 30-619 49-465 (1033)
38 KOG1114 Tripeptidyl peptidase 100.0 1.8E-33 3.9E-38 310.7 20.9 344 217-747 310-688 (1304)
39 cd07488 Peptidases_S8_2 Peptid 100.0 1.5E-33 3.3E-38 289.3 15.6 194 213-582 33-246 (247)
40 cd00306 Peptidases_S8_S53 Pept 100.0 6.3E-31 1.4E-35 270.7 24.8 196 213-582 40-241 (241)
41 COG1404 AprE Subtilisin-like s 99.9 1.2E-23 2.6E-28 240.5 23.5 272 128-618 130-419 (508)
42 KOG3526 Subtilisin-like propro 99.9 9.5E-23 2.1E-27 206.2 10.3 155 127-328 150-316 (629)
43 cd04056 Peptidases_S53 Peptida 99.7 4.4E-17 9.6E-22 177.7 14.2 99 245-349 83-198 (361)
44 cd02133 PA_C5a_like PA_C5a_lik 99.2 4.9E-11 1.1E-15 112.6 11.4 115 375-503 24-141 (143)
45 cd02120 PA_subtilisin_like PA_ 99.1 5.9E-10 1.3E-14 103.0 11.7 118 355-478 2-125 (126)
46 PF05922 Inhibitor_I9: Peptida 98.9 3.1E-09 6.6E-14 90.2 6.7 81 32-114 1-82 (82)
47 PF06280 DUF1034: Fn3-like dom 98.8 3.1E-08 6.7E-13 89.3 10.2 86 655-744 8-112 (112)
48 PF02225 PA: PA domain; Inter 98.7 1.5E-08 3.2E-13 89.6 5.2 90 377-469 6-101 (101)
49 cd04816 PA_SaNapH_like PA_SaNa 98.7 8.3E-08 1.8E-12 88.0 10.0 96 378-477 18-120 (122)
50 cd02122 PA_GRAIL_like PA _GRAI 98.7 1E-07 2.2E-12 88.7 10.2 93 383-478 37-137 (138)
51 cd02129 PA_hSPPL_like PA_hSPPL 98.7 9.5E-08 2.1E-12 85.9 9.0 89 377-471 20-114 (120)
52 KOG3525 Subtilisin-like propro 98.7 3.2E-07 6.9E-12 101.3 15.0 158 127-330 22-189 (431)
53 cd02127 PA_hPAP21_like PA_hPAP 98.6 1.4E-07 3E-12 85.4 9.2 86 390-479 21-116 (118)
54 cd02130 PA_ScAPY_like PA_ScAPY 98.5 8.2E-07 1.8E-11 81.4 11.8 94 377-478 22-121 (122)
55 cd04818 PA_subtilisin_1 PA_sub 98.5 4.4E-07 9.5E-12 82.7 8.9 84 390-477 27-116 (118)
56 cd02126 PA_EDEM3_like PA_EDEM3 98.5 4.7E-07 1E-11 83.3 8.9 84 390-477 27-124 (126)
57 cd02124 PA_PoS1_like PA_PoS1_l 98.5 1.4E-06 3.1E-11 80.1 11.7 95 379-477 28-127 (129)
58 cd02132 PA_GO-like PA_GO-like: 98.5 6.3E-07 1.4E-11 83.9 8.7 91 378-477 39-137 (139)
59 cd02125 PA_VSR PA_VSR: Proteas 98.4 7.5E-07 1.6E-11 81.7 8.6 86 390-478 22-126 (127)
60 cd00538 PA PA: Protease-associ 98.4 8.2E-07 1.8E-11 81.8 8.4 83 391-476 31-123 (126)
61 cd04817 PA_VapT_like PA_VapT_l 98.4 1.2E-06 2.6E-11 81.1 8.7 71 398-471 50-133 (139)
62 cd04813 PA_1 PA_1: Protease-as 98.4 1E-06 2.3E-11 79.5 7.6 77 390-471 27-111 (117)
63 cd02123 PA_C_RZF_like PA_C-RZF 98.3 2.3E-06 4.9E-11 81.4 8.4 82 390-474 50-142 (153)
64 COG4934 Predicted protease [Po 98.2 1.7E-05 3.7E-10 94.4 15.0 94 245-344 288-395 (1174)
65 cd04819 PA_2 PA_2: Protease-as 98.2 2.6E-05 5.6E-10 71.9 12.2 90 375-473 21-121 (127)
66 cd04815 PA_M28_2 PA_M28_2: Pro 97.3 0.00078 1.7E-08 62.7 7.9 76 399-477 34-132 (134)
67 cd04814 PA_M28_1 PA_M28_1: Pro 97.1 0.0013 2.8E-08 61.3 6.4 65 376-440 19-98 (142)
68 cd02128 PA_TfR PA_TfR: Proteas 97.0 0.0009 2E-08 64.9 5.3 92 376-471 28-155 (183)
69 cd04820 PA_M28_1_1 PA_M28_1_1: 96.9 0.0024 5.3E-08 59.1 6.7 66 376-441 21-95 (137)
70 cd04822 PA_M28_1_3 PA_M28_1_3: 96.9 0.0055 1.2E-07 57.8 9.1 65 376-440 19-98 (151)
71 PF14874 PapD-like: Flagellar- 96.6 0.044 9.5E-07 48.2 12.3 82 655-747 20-101 (102)
72 KOG2442 Uncharacterized conser 96.5 0.0084 1.8E-07 65.0 8.5 78 400-480 91-176 (541)
73 PF10633 NPCBM_assoc: NPCBM-as 95.3 0.08 1.7E-06 44.1 7.5 57 655-711 5-62 (78)
74 cd02131 PA_hNAALADL2_like PA_h 95.0 0.032 7E-07 52.0 4.5 61 375-440 13-73 (153)
75 cd02121 PA_GCPII_like PA_GCPII 94.5 0.064 1.4E-06 54.0 5.6 61 376-440 44-104 (220)
76 PF11614 FixG_C: IG-like fold 94.5 0.92 2E-05 41.0 12.8 57 655-712 31-87 (118)
77 KOG3920 Uncharacterized conser 93.9 0.072 1.6E-06 49.1 4.2 97 379-482 66-174 (193)
78 PF06030 DUF916: Bacterial pro 93.7 1 2.2E-05 41.0 11.2 78 643-730 17-118 (121)
79 KOG4628 Predicted E3 ubiquitin 91.8 0.44 9.6E-06 50.8 7.1 78 391-471 63-149 (348)
80 cd04821 PA_M28_1_2 PA_M28_1_2: 91.7 0.44 9.6E-06 45.4 6.3 64 377-440 22-101 (157)
81 PF00345 PapD_N: Pili and flag 88.4 11 0.00025 34.0 12.7 54 656-711 15-75 (122)
82 COG1470 Predicted membrane pro 84.6 15 0.00032 40.7 12.7 56 655-711 284-345 (513)
83 COG1470 Predicted membrane pro 84.2 8.3 0.00018 42.6 10.6 70 655-730 397-467 (513)
84 TIGR02745 ccoG_rdxA_fixG cytoc 81.5 6.1 0.00013 44.2 8.7 56 655-711 346-401 (434)
85 PF00635 Motile_Sperm: MSP (Ma 81.2 8.7 0.00019 33.8 8.2 54 655-711 18-71 (109)
86 KOG1114 Tripeptidyl peptidase 80.0 1.2 2.5E-05 52.7 2.5 24 134-157 77-100 (1304)
87 PF07718 Coatamer_beta_C: Coat 68.8 42 0.00092 31.2 9.2 67 656-730 70-137 (140)
88 smart00635 BID_2 Bacterial Ig- 54.6 40 0.00086 28.0 6.0 38 684-732 4-41 (81)
89 PF07705 CARDB: CARDB; InterP 50.6 76 0.0016 26.9 7.5 53 655-711 19-73 (101)
90 PF00927 Transglut_C: Transglu 50.5 94 0.002 27.2 8.1 55 655-711 15-78 (107)
91 PF12690 BsuPI: Intracellular 45.8 1.3E+02 0.0029 25.1 7.8 20 691-711 53-72 (82)
92 PF07610 DUF1573: Protein of u 43.9 75 0.0016 23.1 5.3 44 661-707 2-45 (45)
93 TIGR03656 IsdC heme uptake pro 41.1 25 0.00054 35.2 3.1 38 1-38 1-39 (217)
94 PF14016 DUF4232: Protein of u 36.1 3.4E+02 0.0073 24.7 10.3 82 655-743 18-112 (131)
95 PF13598 DUF4139: Domain of un 35.8 1.5E+02 0.0033 31.6 8.5 26 655-680 242-267 (317)
96 PF08260 Kinin: Insect kinin p 35.8 17 0.00036 16.4 0.4 6 496-501 3-8 (8)
97 PF02845 CUE: CUE domain; Int 34.4 39 0.00084 24.2 2.5 24 560-583 5-28 (42)
98 PLN03080 Probable beta-xylosid 33.4 1.4E+02 0.003 36.5 8.3 84 656-742 685-778 (779)
99 PF07172 GRP: Glycine rich pro 32.4 35 0.00076 29.6 2.3 25 1-26 1-25 (95)
100 TIGR01451 B_ant_repeat conserv 30.9 2.2E+02 0.0048 21.5 6.3 31 655-685 12-43 (53)
101 PRK15019 CsdA-binding activato 30.9 48 0.001 31.2 3.1 33 544-577 77-109 (147)
102 PF11611 DUF4352: Domain of un 30.1 2.6E+02 0.0055 24.8 7.8 56 655-711 36-103 (123)
103 TIGR03391 FeS_syn_CsdE cystein 29.6 53 0.0011 30.6 3.1 35 543-578 71-105 (138)
104 PRK13203 ureB urease subunit b 29.4 1.5E+02 0.0033 25.8 5.6 17 655-671 18-34 (102)
105 PF01345 DUF11: Domain of unkn 29.3 1.2E+02 0.0026 24.6 5.0 31 655-685 41-72 (76)
106 cd00407 Urease_beta Urease bet 28.7 1.6E+02 0.0034 25.8 5.5 17 655-671 18-34 (101)
107 PRK15098 beta-D-glucoside gluc 28.5 1.4E+02 0.0029 36.5 7.2 54 655-711 667-729 (765)
108 TIGR00192 urease_beta urease, 27.0 1.9E+02 0.004 25.3 5.6 17 655-671 18-34 (101)
109 PRK09296 cysteine desufuration 26.4 64 0.0014 30.0 3.1 33 544-577 67-99 (138)
110 PF13940 Ldr_toxin: Toxin Ldr, 26.4 56 0.0012 22.2 1.9 13 551-563 14-26 (35)
111 PRK15308 putative fimbrial pro 26.4 2.4E+02 0.0051 28.9 7.4 54 656-710 32-101 (234)
112 COG2166 sufE Cysteine desulfur 25.9 62 0.0014 30.2 2.8 33 544-577 72-104 (144)
113 PRK09918 putative fimbrial cha 25.8 2E+02 0.0044 29.2 7.0 51 656-709 39-94 (230)
114 PRK13202 ureB urease subunit b 25.1 2E+02 0.0044 25.2 5.6 15 657-671 21-35 (104)
115 PF02657 SufE: Fe-S metabolism 24.6 76 0.0017 29.0 3.2 34 544-578 58-91 (125)
116 PRK13192 bifunctional urease s 24.1 2.5E+02 0.0055 27.8 6.7 17 655-671 127-143 (208)
117 smart00546 CUE Domain that may 23.8 1.1E+02 0.0023 22.0 3.2 25 559-583 5-29 (43)
118 PF00553 CBM_2: Cellulose bind 22.2 5.1E+02 0.011 22.3 9.1 31 656-686 14-45 (101)
119 PF00699 Urease_beta: Urease b 21.6 2.1E+02 0.0045 24.9 5.0 17 655-671 17-33 (100)
120 PRK13201 ureB urease subunit b 21.4 2.5E+02 0.0053 25.8 5.6 17 655-671 18-34 (136)
121 PF04255 DUF433: Protein of un 21.2 87 0.0019 24.1 2.4 39 542-580 10-54 (56)
122 COG1570 XseA Exonuclease VII, 20.8 2.8E+02 0.006 31.1 7.1 75 248-328 159-238 (440)
123 PRK13205 ureB urease subunit b 20.5 2.5E+02 0.0055 26.3 5.6 17 655-671 18-34 (162)
124 PF02601 Exonuc_VII_L: Exonucl 20.4 3E+02 0.0066 29.4 7.4 73 249-327 39-119 (319)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.2e-53 Score=451.01 Aligned_cols=305 Identities=53% Similarity=0.843 Sum_probs=258.8
Q ss_pred eccccccCCccccccccCC--CCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceee
Q 037455 111 GHLHTTRTPQFLGLKKHAG--VWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLI 188 (755)
Q Consensus 111 ~~~~~~~~~~~~g~~~~~~--~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~ 188 (755)
++++++++++++++..+.. +|.++++|+||+|||||||||++||+|.+++..+.+..|.+.|..+..+....|++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 80 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKLI 80 (307)
T ss_pred CCccccCCHHHcCCCCCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeEE
Confidence 4678889999999977555 47789999999999999999999999999999999999999999998887778999999
Q ss_pred eeeeccccccccCCCCCCCCCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCC
Q 037455 189 GARSFSKGIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAA 268 (755)
Q Consensus 189 g~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~ 268 (755)
+.++|..++..... .+...+..++.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++..+. +
T Consensus 81 g~~~~~~~~~~~~~-~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~--~ 157 (307)
T cd04852 81 GARYFSDGYDAYGG-FNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGG--C 157 (307)
T ss_pred EEEEcccchhhccC-cccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCC--c
Confidence 99999887644322 12334456688999999999999999977665555666667899999999999999988444 7
Q ss_pred ChhHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEecccccc
Q 037455 269 AETDVLAGMDQAIADGVDIMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVD 348 (755)
Q Consensus 269 ~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~ 348 (755)
..+++++||++|++++++|||||||........+.+..++..+.++|+++|+||||+|+...+.++..||+++||+.+
T Consensus 158 ~~~~~~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~-- 235 (307)
T cd04852 158 FGSDILAAIDQAIADGVDVISYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST-- 235 (307)
T ss_pred cHHHHHHHHHHHHHcCCCEEEeCCCCCCCCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc--
Confidence 899999999999999999999999997644566788888889999999999999999988778888899999999710
Q ss_pred ceeeEEEEeCCceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHH
Q 037455 349 REFAAHVTLGNEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVR 428 (755)
Q Consensus 349 ~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~ 428 (755)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HcCceEEEEecCCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCC
Q 037455 429 KSGAAGAIFSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPW 508 (755)
Q Consensus 429 ~~ga~g~i~~n~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g 508 (755)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCeeEeCCCcEEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 037455 509 ILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTAD 584 (755)
Q Consensus 509 ~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~ 584 (755)
+||||+|||.+|+++++.... .........|..++|||||||+|||++|||+|++|+|+|.|||++|++||+
T Consensus 236 -~~~di~apG~~i~~~~~~~~~---~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 236 -LKPDIAAPGVDILAAWTPEGA---DPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred -CccceeeccCceeecccCccc---cccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 477999999999999875311 111222358999999999999999999999999999999999999999985
No 2
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=4.1e-50 Score=445.38 Aligned_cols=297 Identities=21% Similarity=0.202 Sum_probs=211.9
Q ss_pred ccccccc--cCCCCc--CCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCcee---eeeee
Q 037455 120 QFLGLKK--HAGVWP--AAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKL---IGARS 192 (755)
Q Consensus 120 ~~~g~~~--~~~~~~--~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki---~g~~~ 192 (755)
..|+++. +..+|+ .+.+|+||+|||||||||++||||.++-.... ....|+- .++. +++.. +.+++
T Consensus 294 ~qWgLd~i~~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~-~el~Grd----giDd--D~nG~vdd~~G~n 366 (639)
T PTZ00262 294 LQWGLDLTRLDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVNV-KELHGRK----GIDD--DNNGNVDDEYGAN 366 (639)
T ss_pred cCcCcchhCchHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhccccc-ccccCcc----cccc--ccCCccccccccc
Confidence 3466654 344665 45689999999999999999999986411000 0000100 0000 01111 11223
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhH
Q 037455 193 FSKGIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETD 272 (755)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~ 272 (755)
|.++ ..+|.|++||||||||||||...++ ..+.||||+|+|+++|+++..+. +..++
T Consensus 367 fVd~-------------~~~P~D~~GHGTHVAGIIAA~gnN~--------~Gi~GVAP~AkLi~vKVld~~G~--G~~sd 423 (639)
T PTZ00262 367 FVNN-------------DGGPMDDNYHGTHVSGIISAIGNNN--------IGIVGVDKRSKLIICKALDSHKL--GRLGD 423 (639)
T ss_pred ccCC-------------CCCCCCCCCcchHHHHHHhccccCC--------CceeeeecccccceEEEecCCCC--ccHHH
Confidence 3221 2347889999999999999975432 12489999999999999988775 78899
Q ss_pred HHHHHHHHHhCCCcEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCc--------------ccc----
Q 037455 273 VLAGMDQAIADGVDIMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYS--------------IRN---- 334 (755)
Q Consensus 273 i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--------------~~~---- 334 (755)
+++||+||++.|++|||||||... ....+..++.+|.++|+++|+||||+|..... ++.
T Consensus 424 I~~AI~yA~~~GA~VINmSlG~~~---~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~ 500 (639)
T PTZ00262 424 MFKCFDYCISREAHMINGSFSFDE---YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSK 500 (639)
T ss_pred HHHHHHHHHHCCCCEEEeccccCC---ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhc
Confidence 999999999999999999999752 34567888889999999999999999864321 111
Q ss_pred CCCceEEeccccccceeeEEEEeCCceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecC
Q 037455 335 GAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDY 414 (755)
Q Consensus 335 ~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~ 414 (755)
..+++|+|||...+.
T Consensus 501 ~~~nVIaVGAv~~d~----------------------------------------------------------------- 515 (639)
T PTZ00262 501 KLRNVITVSNLIKDK----------------------------------------------------------------- 515 (639)
T ss_pred cCCCEEEEeeccCCC-----------------------------------------------------------------
Confidence 235566666532100
Q ss_pred CCchhHHHHHHHHHHcCceEEEEecCCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCcc
Q 037455 415 NGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQV 494 (755)
Q Consensus 415 ~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 494 (755)
......
T Consensus 516 --------------------------------------------------------------------------~~~~s~ 521 (639)
T PTZ00262 516 --------------------------------------------------------------------------NNQYSL 521 (639)
T ss_pred --------------------------------------------------------------------------CCcccc
Confidence 000123
Q ss_pred ccccCCCCCCCCCCcccCeeEeCCCcEEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHH
Q 037455 495 ANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAA 574 (755)
Q Consensus 495 a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ 574 (755)
+.||++|.. ++||+|||++|+|+++.+ .|..++|||||||||||+||||++++|+|++.|
T Consensus 522 s~~Snyg~~-------~VDIaAPG~dI~St~p~g-------------~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~q 581 (639)
T PTZ00262 522 SPNSFYSAK-------YCQLAAPGTNIYSTFPKN-------------SYRKLNGTSMAAPHVAAIASLILSINPSLSYEE 581 (639)
T ss_pred cccccCCCC-------cceEEeCCCCeeeccCCC-------------ceeecCCCchhHHHHHHHHHHHHhhCCCCCHHH
Confidence 456676632 349999999999998864 899999999999999999999999999999999
Q ss_pred HHHHHHccccccccCCcccccCCCCCCCCCCccc-ccccCcCccCCCCe
Q 037455 575 IRSALMTTADVLDNAYGMITDKSTGVAGTPLDFG-AGHINPNKAMDPGL 622 (755)
Q Consensus 575 ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G-~G~in~~~Av~~~l 622 (755)
|+++|++||.++... +..+| .|+||+.+||+.++
T Consensus 582 V~~iL~~TA~~l~~~--------------~n~~~wgG~LDa~kAV~~Ai 616 (639)
T PTZ00262 582 VIRILKESIVQLPSL--------------KNKVKWGGYLDIHHAVNLAI 616 (639)
T ss_pred HHHHHHHhCccCCCC--------------CCccccCcEEcHHHHHHHHH
Confidence 999999999876321 11233 38999999997544
No 3
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=4e-49 Score=409.30 Aligned_cols=244 Identities=26% Similarity=0.385 Sum_probs=198.5
Q ss_pred CcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCCC
Q 037455 131 WPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDY 210 (755)
Q Consensus 131 ~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~ 210 (755)
|+++++|+||+|||||||||.+||+|.+. ....+|...
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~----------------------------~~~~~~~~~-------------- 38 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNV----------------------------KERTNWTNE-------------- 38 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhcc----------------------------ccccccCCC--------------
Confidence 89999999999999999999999999631 000111111
Q ss_pred CCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCcEEEE
Q 037455 211 DSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSL 290 (755)
Q Consensus 211 ~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~dVIn~ 290 (755)
....|+.||||||||||+|+.. .+.||||+|+|+.+|++.+.+. ...++++++|+||+++++|||||
T Consensus 39 ~~~~d~~gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~--~~~~~~~~a~~~a~~~~~~Vin~ 105 (255)
T cd07479 39 KTLDDGLGHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQV--SYTSWFLDAFNYAILTKIDVLNL 105 (255)
T ss_pred CCCCCCCCcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCCC--chHHHHHHHHHhhhhcCCCEEEe
Confidence 1245778999999999998742 1389999999999999988764 56778899999999999999999
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCc--cccCCCceEEeccccccceeeEEEEeCCceEEEeeee
Q 037455 291 SLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYS--IRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIGKS 368 (755)
Q Consensus 291 SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g~~ 368 (755)
|||... +...++..++.++.++|++||+||||+|+...+ .+...+++|+||+..
T Consensus 106 S~G~~~--~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~---------------------- 161 (255)
T cd07479 106 SIGGPD--FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGID---------------------- 161 (255)
T ss_pred eccCCC--CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeec----------------------
Confidence 999853 334567777778889999999999999975433 456678899998732
Q ss_pred ccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCCCC
Q 037455 369 VYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSPE 448 (755)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~~ 448 (755)
T Consensus 162 -------------------------------------------------------------------------------- 161 (255)
T cd07479 162 -------------------------------------------------------------------------------- 161 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCC----CCCCcccCeeEeCCCcEEee
Q 037455 449 VFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSL----RSPWILKPDILAPGVDILAA 524 (755)
Q Consensus 449 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~----~~~g~lKPDI~APG~~I~sa 524 (755)
..+.++.|||+|++. ...+++||||+|||.+|+++
T Consensus 162 -----------------------------------------~~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~ 200 (255)
T cd07479 162 -----------------------------------------FDDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGS 200 (255)
T ss_pred -----------------------------------------cCCccccccCCCCCcccccCCCCCcCccEEecCCCeecc
Confidence 123678899999652 12378899999999999987
Q ss_pred ecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCC----CCCHHHHHHHHHccccccc
Q 037455 525 WVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHR----DWSSAAIRSALMTTADVLD 587 (755)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p----~ls~~~ik~~L~~TA~~~~ 587 (755)
.... .|..++|||||||||||++|||+|++| .++|.+||++|++||+++.
T Consensus 201 ~~~~-------------~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 201 KLKG-------------GCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred ccCC-------------CeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 6543 788999999999999999999999998 7899999999999999864
No 4
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.5e-49 Score=417.10 Aligned_cols=287 Identities=27% Similarity=0.283 Sum_probs=190.5
Q ss_pred CCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCCCCCCCCC
Q 037455 137 GSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRDF 216 (755)
Q Consensus 137 G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~d~ 216 (755)
|+||+|||||||||++||||.++... .|+. .|+ +..++....++..+ ....+.|+
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~~------~~d---~~~~~~~g~d~~~~------------~~~~~~D~ 55 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWKL------KFD---YKAYLLPGMDKWGG------------FYVIMYDF 55 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC----Cccc------ccC---cCCCccCCcCCCCC------------ccCCCCCc
Confidence 79999999999999999999753110 0000 000 00011111111111 11236789
Q ss_pred CCCchhhhhhhccCCCCCCccccc-CCceeeeecCCCeEEEEEEeecCCCCCCChhHHHH-------HHHHH--HhCCCc
Q 037455 217 FGHGTHTSSTIGGSRVQDVDHFGY-AKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLA-------GMDQA--IADGVD 286 (755)
Q Consensus 217 ~gHGThVAGiiag~~~~~~~~~G~-~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~-------ai~~a--~~~g~d 286 (755)
+||||||||||||......+.+++ ....+.||||+|+|+.+|+|...+. .....+.+ +++|. .+++++
T Consensus 56 ~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 133 (311)
T cd07497 56 FSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDV--IYAWLWTAGFDPVDRKLSWIYTGGPRVD 133 (311)
T ss_pred cccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCc--chhhhhhhccchhhhhhhhhhccCCCce
Confidence 999999999999986433222221 1234689999999999999975542 22222332 34443 367999
Q ss_pred EEEEccCCCCCCC-----CCCHHHHHHHHH-HhCCcEEEEecCCCCCCCC--ccccCCCceEEeccccccceeeEEEEeC
Q 037455 287 IMSLSLAFPETTF-----DENPIAIGAFAA-LKRGIFVACSAGNSGPRPY--SIRNGAPWITAVGAGTVDREFAAHVTLG 358 (755)
Q Consensus 287 VIn~SlG~~~~~~-----~~~~~~~a~~~a-~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVga~~~~~~~~~~~~~~ 358 (755)
|||||||...... ..+..+...+.+ .++|+++|+||||+|+... ..+..++++|+|||++.....+..
T Consensus 134 VIN~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~---- 209 (311)
T cd07497 134 VISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFY---- 209 (311)
T ss_pred EEEecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchh----
Confidence 9999999854211 122333333332 4789999999999997643 456678999999996422110000
Q ss_pred CceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEe
Q 037455 359 NEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFS 438 (755)
Q Consensus 359 ~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~ 438 (755)
.+.
T Consensus 210 ---------------------~~~-------------------------------------------------------- 212 (311)
T cd07497 210 ---------------------LFG-------------------------------------------------------- 212 (311)
T ss_pred ---------------------hhc--------------------------------------------------------
Confidence 000
Q ss_pred cCCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCC
Q 037455 439 ADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPG 518 (755)
Q Consensus 439 n~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG 518 (755)
......+.++.||||||+.+ +++||||+|||
T Consensus 213 -----------------------------------------------~~~~~~~~~~~fSs~Gp~~~--g~~kPdv~ApG 243 (311)
T cd07497 213 -----------------------------------------------YLPGGSGDVVSWSSRGPSIA--GDPKPDLAAIG 243 (311)
T ss_pred -----------------------------------------------cccCCCCCccccccCCCCcc--cCCCCceeccC
Confidence 00112357899999999986 89999999999
Q ss_pred CcEEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCC------CCCHHHHHHHHHccc
Q 037455 519 VDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHR------DWSSAAIRSALMTTA 583 (755)
Q Consensus 519 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p------~ls~~~ik~~L~~TA 583 (755)
++|+++.+...... .......|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 244 ~~i~s~~~~~~~~~---~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 244 AFAWAPGRVLDSGG---ALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred cceEeecccCCCCc---ccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 99999876542100 011123799999999999999999999999976 589999999999997
No 5
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=3.7e-49 Score=412.41 Aligned_cols=270 Identities=25% Similarity=0.258 Sum_probs=202.5
Q ss_pred CCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCCCCCC
Q 037455 134 AGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSP 213 (755)
Q Consensus 134 ~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~ 213 (755)
+++|+||+|||||||||.+||++.+...+..+ +...+... ....
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~~l~-----------------------~~~~~~~~-------------~~~~ 44 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASGDLP-----------------------GNVNVLGD-------------LDGG 44 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCCCCC-----------------------cceeeccc-------------cCCC
Confidence 57899999999999999999865432111111 10011110 1124
Q ss_pred CCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCcEEEEccC
Q 037455 214 RDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLA 293 (755)
Q Consensus 214 ~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~dVIn~SlG 293 (755)
.|..+||||||||| .||||+|+|+.+|+. ...+++++||+|++++|++|||||||
T Consensus 45 ~d~~gHGT~vAgii------------------~GvAP~a~l~~~~~~-------~~~~~i~~ai~~a~~~g~~Vin~S~g 99 (275)
T cd05562 45 SGGGDEGRAMLEII------------------HDIAPGAELAFHTAG-------GGELDFAAAIRALAAAGADIIVDDIG 99 (275)
T ss_pred CCCCchHHHHHHHH------------------hccCCCCEEEEEecC-------CCHHHHHHHHHHHHHcCCCEEEeccc
Confidence 57889999999999 499999999998863 35789999999999999999999999
Q ss_pred CCCCCC-CCCHHHHHHHHHHhC-CcEEEEecCCCCCCCC-ccccCCCceEEeccccccceeeEEEEeCCceEEEeeeecc
Q 037455 294 FPETTF-DENPIAIGAFAALKR-GIFVACSAGNSGPRPY-SIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSVY 370 (755)
Q Consensus 294 ~~~~~~-~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g~~~~ 370 (755)
....+. ....+..++.++.++ |+++|+||||+|.... ..+...|++|+|||.+.........
T Consensus 100 ~~~~~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s--------------- 164 (275)
T cd05562 100 YLNEPFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGS--------------- 164 (275)
T ss_pred ccCCCcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccc---------------
Confidence 865433 345678888888887 9999999999998543 4567899999999965322110000
Q ss_pred CCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCCCCCc
Q 037455 371 PENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSPEVF 450 (755)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~~~~ 450 (755)
|. +.
T Consensus 165 ----------------------~~------------------~~------------------------------------ 168 (275)
T cd05562 165 ----------------------DP------------------AP------------------------------------ 168 (275)
T ss_pred ----------------------cc------------------cc------------------------------------
Confidence 00 00
Q ss_pred cccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCc-EEeeecCCC
Q 037455 451 NMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVD-ILAAWVPNN 529 (755)
Q Consensus 451 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~-I~sa~~~~~ 529 (755)
.......+.||++||+.+ +++||||+|||+. +.+++..
T Consensus 169 -------------------------------------~~~~s~~~~~~~~~p~~~--~~~~~di~Apgg~~~~~~~~~-- 207 (275)
T cd05562 169 -------------------------------------GGTPSSFDPVGIRLPTPE--VRQKPDVTAPDGVNGTVDGDG-- 207 (275)
T ss_pred -------------------------------------CCCcccccCCcccCcCCC--CCcCCeEEcCCcccccCCCcC--
Confidence 000113456888999876 7899999999753 4444433
Q ss_pred CCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHccccccccCCcccccCCCCCCCCCCcccc
Q 037455 530 PWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLDFGA 609 (755)
Q Consensus 530 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~ 609 (755)
+.|..++|||||||||||++|||+|++|+|++.|||++|++||+++. .+..+..|||
T Consensus 208 -----------~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~------------~~g~d~~~G~ 264 (275)
T cd05562 208 -----------DGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMG------------EPGYDNASGS 264 (275)
T ss_pred -----------CceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccC------------CCCCCCCcCc
Confidence 27999999999999999999999999999999999999999999874 2345569999
Q ss_pred cccCcCccCC
Q 037455 610 GHINPNKAMD 619 (755)
Q Consensus 610 G~in~~~Av~ 619 (755)
|+||+.+||+
T Consensus 265 G~vda~~Av~ 274 (275)
T cd05562 265 GLVDADRAVA 274 (275)
T ss_pred CcccHHHHhh
Confidence 9999999986
No 6
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=3.8e-48 Score=422.23 Aligned_cols=312 Identities=26% Similarity=0.346 Sum_probs=233.3
Q ss_pred CCcCCC-CCCccEEEEEcccccCCCCCCcCCCCCCCCc-----ccccceeccccccccccCceeeeeeeccccccccCCC
Q 037455 130 VWPAAG-FGSDIIVGILDTGIWPESKSYDDRGMPPVPE-----RWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLN 203 (755)
Q Consensus 130 ~~~~~~-~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~-----~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~ 203 (755)
+|+++. +|+||+|||||||||++||+|.+....+... .+...+..+ ...+++.+++..++|.++....
T Consensus 2 ~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--- 75 (346)
T cd07475 2 LWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIG---YGKYYNEKVPFAYNYADNNDDI--- 75 (346)
T ss_pred hhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCC---CCcccccCCCeeEcCCCCCCcc---
Confidence 688887 9999999999999999999998764332111 111111111 1124667888888887663211
Q ss_pred CCCCCCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeec--CCCCCCChhHHHHHHHHHH
Q 037455 204 ISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFS--NDNLAAAETDVLAGMDQAI 281 (755)
Q Consensus 204 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~--~g~~~~~~~~i~~ai~~a~ 281 (755)
....|..+|||||||||+|...+..+ ...+.||||+|+|+.+|+++. .+. .....+++++++++
T Consensus 76 -------~~~~~~~~HGT~vagiiag~~~~~~~-----~~~~~GiAp~a~l~~~~v~~~~~~~~--~~~~~~~~ai~~a~ 141 (346)
T cd07475 76 -------LDEDDGSSHGMHVAGIVAGNGDEEDN-----GEGIKGVAPEAQLLAMKVFSNPEGGS--TYDDAYAKAIEDAV 141 (346)
T ss_pred -------CCCCCCCCcHHHHHHHHhcCCCcccc-----CCceEEeCCCCeEEEEEeecCCCCCC--CCHHHHHHHHHHHH
Confidence 11446889999999999998654221 223599999999999999974 333 67888999999999
Q ss_pred hCCCcEEEEccCCCCCC-CCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCcc----------------ccCCCceEEecc
Q 037455 282 ADGVDIMSLSLAFPETT-FDENPIAIGAFAALKRGIFVACSAGNSGPRPYSI----------------RNGAPWITAVGA 344 (755)
Q Consensus 282 ~~g~dVIn~SlG~~~~~-~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~----------------~~~~p~vitVga 344 (755)
+.|++|||||||..... .....+..++.++.++|+++|+||||+|...... +...+++|+||+
T Consensus 142 ~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga 221 (346)
T cd07475 142 KLGADVINMSLGSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVAS 221 (346)
T ss_pred HcCCCEEEECCCcCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEee
Confidence 99999999999987632 4456778888899999999999999998654321 122344555554
Q ss_pred ccccceeeEEEEeCCceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHH
Q 037455 345 GTVDREFAAHVTLGNEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQL 424 (755)
Q Consensus 345 ~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~ 424 (755)
...
T Consensus 222 ~~~----------------------------------------------------------------------------- 224 (346)
T cd07475 222 ANK----------------------------------------------------------------------------- 224 (346)
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 210
Q ss_pred HHHHHcCceEEEEecCCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCC
Q 037455 425 EEVRKSGAAGAIFSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSL 504 (755)
Q Consensus 425 ~~~~~~ga~g~i~~n~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~ 504 (755)
.......+.++.||+|||+.
T Consensus 225 ------------------------------------------------------------~~~~~~~~~~~~~S~~G~~~ 244 (346)
T cd07475 225 ------------------------------------------------------------KVPNPNGGQMSGFSSWGPTP 244 (346)
T ss_pred ------------------------------------------------------------ccCCCCCCccCCCcCCCCCc
Confidence 00012335678999999998
Q ss_pred CCCCcccCeeEeCCCcEEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhh----CCCCCHHH----HH
Q 037455 505 RSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKAT----HRDWSSAA----IR 576 (755)
Q Consensus 505 ~~~g~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~p~ls~~~----ik 576 (755)
. +++||||+|||.+|+++.... .|..++|||||||+|||++|||+|+ +|.|++.+ ||
T Consensus 245 ~--~~~~pdi~apG~~i~s~~~~~-------------~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik 309 (346)
T cd07475 245 D--LDLKPDITAPGGNIYSTVNDN-------------TYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVK 309 (346)
T ss_pred c--cCcCCeEEeCCCCeEEecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHH
Confidence 6 799999999999999987764 7899999999999999999999998 78899876 78
Q ss_pred HHHHccccccccCCcccccCCCCCCCCCCcccccccCcCccCC
Q 037455 577 SALMTTADVLDNAYGMITDKSTGVAGTPLDFGAGHINPNKAMD 619 (755)
Q Consensus 577 ~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~in~~~Av~ 619 (755)
++|++||.+.... .....++.+.++|+|+||+.+||+
T Consensus 310 ~~l~~ta~~~~~~------~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 310 NLLMNTATPPLDS------EDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred HHHHhcCCccccc------CCCCccCCccccCcchhcHHHhhC
Confidence 8999999853211 122566778899999999999985
No 7
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=1.7e-47 Score=425.87 Aligned_cols=406 Identities=22% Similarity=0.212 Sum_probs=239.1
Q ss_pred CCCCccEEEEEcccccCCCCCCcC-CCCCCCCcccccceeccccccccccCceeeeeeecccc-ccccCCCCCCCCCCCC
Q 037455 135 GFGSDIIVGILDTGIWPESKSYDD-RGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKG-IRQNGLNISTTDDYDS 212 (755)
Q Consensus 135 ~~G~Gv~VgVIDtGid~~Hp~f~~-~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~-~~~~~~~~~~~~~~~~ 212 (755)
++|+||+|||||||||+.||+|++ +|.+++...|++....+..- ....+...+... .+.. .....+.+...
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~------~~~~~~~~~~~~~i~~~-~~~~~p~~~~~ 73 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPP------GGYYGGGEYTEEIINAA-LASDNPYDIVP 73 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCC------ccccCceEEeHHHHHHH-HhcCCccccCc
Confidence 479999999999999999999984 56778888898776543211 111111111110 0000 00011222233
Q ss_pred CCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCC--------CCChhHHHHHHHHHHhC-
Q 037455 213 PRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNL--------AAAETDVLAGMDQAIAD- 283 (755)
Q Consensus 213 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~--------~~~~~~i~~ai~~a~~~- 283 (755)
..|+.||||||||||||+..++ ..+.||||+|+|+++|++...+.. .+..++++.||+|+++.
T Consensus 74 ~~D~~GHGThvAGIiag~~~~~--------~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a 145 (455)
T cd07478 74 SRDENGHGTHVAGIAAGNGDNN--------PDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKA 145 (455)
T ss_pred CCCCCCchHHHHHHHhcCCCCC--------CCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHH
Confidence 5689999999999999986442 234899999999999999876521 15688999999999974
Q ss_pred ----CCcEEEEccCCCCC-CCCCCHHHHHHHHHHhC-CcEEEEecCCCCCCCCccccC-----CCc--eEEeccccccce
Q 037455 284 ----GVDIMSLSLAFPET-TFDENPIAIGAFAALKR-GIFVACSAGNSGPRPYSIRNG-----APW--ITAVGAGTVDRE 350 (755)
Q Consensus 284 ----g~dVIn~SlG~~~~-~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~~~~~~-----~p~--vitVga~~~~~~ 350 (755)
.+.|||||||.+.+ ....++++.++..+..+ |++||+||||+|....+.... ... -+.|+... ..
T Consensus 146 ~~~~~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~~~--~~ 223 (455)
T cd07478 146 LELNKPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEGE--KG 223 (455)
T ss_pred HHhCCCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECCCC--cc
Confidence 46799999998763 44567888888887766 999999999999754433321 001 13344321 11
Q ss_pred eeEEEEeCCceE-EEe-----eeeccC-CC-CC-CceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHH
Q 037455 351 FAAHVTLGNEEL-TVI-----GKSVYP-EN-LF-VSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVY 421 (755)
Q Consensus 351 ~~~~~~~~~g~~-~~~-----g~~~~~-~~-~~-~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~ 421 (755)
+.-.++...... .+. |..... .. .. ...+.+.+... ..|... ..+....|.-.+..+-.+
T Consensus 224 ~~~eiW~~~~d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t----~i~v~y-~~~~~~~g~~~i~i~~~~------ 292 (455)
T cd07478 224 FNLEIWGDFPDRFSVSIISPSGESSGRINPGIGGSESYKFVFEGT----TVYVYY-YLPEPYTGDQLIFIRFKN------ 292 (455)
T ss_pred eEEEEecCCCCEEEEEEECCCCCccCccCcCCCcceeEEEEECCe----EEEEEE-cCCCCCCCCeEEEEEccC------
Confidence 111122111111 000 000000 00 00 00011111100 000000 011112222122111110
Q ss_pred HHHHHHHHcCceEEEEecC---CCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeee------eC-CcCC
Q 037455 422 QQLEEVRKSGAAGAIFSAD---SRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITI------LG-TKPA 491 (755)
Q Consensus 422 ~~~~~~~~~ga~g~i~~n~---~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~------~~-~~~~ 491 (755)
...|-.-+-++.. +|. ...|+|.-.+...+..++ ... +..+++.+... .. +...
T Consensus 293 ------~~~GiW~i~~~~~~~~~g~----~~~Wlp~~~~~~~~t~f~----~~~--~~~tit~Pa~~~~vitVga~~~~~ 356 (455)
T cd07478 293 ------IKPGIWKIRLTGVSITDGR----FDAWLPSRGLLSENTRFL----EPD--PYTTLTIPGTARSVITVGAYNQNN 356 (455)
T ss_pred ------CCccceEEEEEeccCCCce----EEEEecCcCcCCCCCEee----cCC--CCceEecCCCCCCcEEEEEEeCCC
Confidence 0112222222222 111 123444333222221111 111 22334333221 11 1234
Q ss_pred CccccccCCCCCCCCCCcccCeeEeCCCcEEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhC----
Q 037455 492 PQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATH---- 567 (755)
Q Consensus 492 ~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~---- 567 (755)
+.++.||||||+.+ +++||||+|||++|+++++.+ .|..++|||||||||||++|||+|++
T Consensus 357 ~~~~~~Ss~G~~~~--~~~kpdi~APG~~i~s~~~~~-------------~~~~~sGTS~Aap~vaG~aALl~~~~~~~~ 421 (455)
T cd07478 357 NSIAIFSGRGPTRD--GRIKPDIAAPGVNILTASPGG-------------GYTTRSGTSVAAAIVAGACALLLQWGIVRG 421 (455)
T ss_pred CcccCccCCCcCCC--CCcCceEEecCCCEEEeecCC-------------cEEeeCcHHHHHHHHHHHHHHHHHhchhcc
Confidence 56999999999987 899999999999999999864 89999999999999999999999975
Q ss_pred --CCCCHHHHHHHHHccccccccCCcccccCCCCCCCCCCccccc
Q 037455 568 --RDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLDFGAG 610 (755)
Q Consensus 568 --p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G 610 (755)
|.|++++||++|++||+++. +..+++++||||
T Consensus 422 ~~p~~~~~~ik~~L~~tA~~~~-----------~~~~pn~~~GyG 455 (455)
T cd07478 422 NDPYLYGEKIKTYLIRGARRRP-----------GDEYPNPEWGYG 455 (455)
T ss_pred CCCCCCHHHHHHHHHHhCccCC-----------CCCCCCCCCCCC
Confidence 56799999999999999874 245677899998
No 8
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.7e-47 Score=410.57 Aligned_cols=294 Identities=30% Similarity=0.390 Sum_probs=231.4
Q ss_pred CCCCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCC
Q 037455 128 AGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTT 207 (755)
Q Consensus 128 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~ 207 (755)
+.+|+.+++|+||+|||||+|||++||+|.+.-. .+.++.+.++|..+... ..+..
T Consensus 3 ~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~---------------------~~~~~~~~~d~~~~~~~---~~~~~ 58 (312)
T cd07489 3 DKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFG---------------------PGCKVAGGYDFVGDDYD---GTNPP 58 (312)
T ss_pred hhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCC---------------------CCceeccccccCCcccc---cccCC
Confidence 5689999999999999999999999999985411 11133344444322110 01122
Q ss_pred CCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCcE
Q 037455 208 DDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDI 287 (755)
Q Consensus 208 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~dV 287 (755)
.+..++.|..+|||||||||+|...+ .| +.||||+|+|+.+|++.+.+. ...+.++++|+++++++++|
T Consensus 59 ~~~~~~~d~~gHGT~vAgiia~~~~~----~~-----~~GiAp~a~i~~~~v~~~~~~--~~~~~~~~ai~~a~~~~~~i 127 (312)
T cd07489 59 VPDDDPMDCQGHGTHVAGIIAANPNA----YG-----FTGVAPEATLGAYRVFGCSGS--TTEDTIIAAFLRAYEDGADV 127 (312)
T ss_pred CCCCCCCCCCCcHHHHHHHHhcCCCC----Cc-----eEEECCCCEEEEEEeecCCCC--CCHHHHHHHHHHHHhcCCCE
Confidence 33345677899999999999998643 12 489999999999999987664 67778899999999999999
Q ss_pred EEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCC---ccccCCCceEEeccccccceeeEEEEeCCceEEE
Q 037455 288 MSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPY---SIRNGAPWITAVGAGTVDREFAAHVTLGNEELTV 364 (755)
Q Consensus 288 In~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~ 364 (755)
||||||.... +..+.+...+.++.++|+++|+||||+|.... ..+...+++|+||+.+
T Consensus 128 In~S~g~~~~-~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~------------------ 188 (312)
T cd07489 128 ITASLGGPSG-WSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD------------------ 188 (312)
T ss_pred EEeCCCcCCC-CCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec------------------
Confidence 9999998643 33477788888899999999999999987542 3355677888888611
Q ss_pred eeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCc
Q 037455 365 IGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQH 444 (755)
Q Consensus 365 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~ 444 (755)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEee
Q 037455 445 LSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAA 524 (755)
Q Consensus 445 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa 524 (755)
+.||+|||+.+ ...||||+|||++++++
T Consensus 189 --------------------------------------------------~~~s~~g~~~~--~~~kpdv~ApG~~i~~~ 216 (312)
T cd07489 189 --------------------------------------------------SYFSSWGPTNE--LYLKPDVAAPGGNILST 216 (312)
T ss_pred --------------------------------------------------CCccCCCCCCC--CCcCccEEcCCCCEEEe
Confidence 46899999987 68999999999999999
Q ss_pred ecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhC-CCCCHHHHHHHHHccccccccCCcccccCCCCCCCC
Q 037455 525 WVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATH-RDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGT 603 (755)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~ 603 (755)
++...+ .|..++|||||||+|||++||++|++ |.+++.+||++|++||.++...+..-.. ..+++
T Consensus 217 ~~~~~~-----------~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~~---~~~~~ 282 (312)
T cd07489 217 YPLAGG-----------GYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSAL---PDLAP 282 (312)
T ss_pred eeCCCC-----------ceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCccc---cCCCC
Confidence 887532 69999999999999999999999999 9999999999999999987644221111 11466
Q ss_pred CCcccccccCcCccCCCC
Q 037455 604 PLDFGAGHINPNKAMDPG 621 (755)
Q Consensus 604 ~~~~G~G~in~~~Av~~~ 621 (755)
..++|+|+||+.+|++..
T Consensus 283 ~~~~G~G~vn~~~a~~~~ 300 (312)
T cd07489 283 VAQQGAGLVNAYKALYAT 300 (312)
T ss_pred HhhcCcceeeHHHHhcCC
Confidence 779999999999999854
No 9
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=1.6e-46 Score=391.62 Aligned_cols=248 Identities=24% Similarity=0.297 Sum_probs=202.4
Q ss_pred CCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCC
Q 037455 130 VWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDD 209 (755)
Q Consensus 130 ~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~ 209 (755)
+|+.+++|+||+|||||+|||++||+|.+..+.+ ...+.. .
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~--------------------------~~~~~~-------------~ 42 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTP--------------------------LFTYAA-------------A 42 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCcccc--------------------------ccCccc-------------c
Confidence 7999999999999999999999999998542110 000000 0
Q ss_pred CCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCcEEE
Q 037455 210 YDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMS 289 (755)
Q Consensus 210 ~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~dVIn 289 (755)
..+..|..+|||||||||+|+..+ .+.||||+|+|+.+|++...+.. .+..++++||+||+++|++|||
T Consensus 43 ~~~~~~~~gHGT~VAgii~g~~~~----------~~~GvAp~a~i~~~~v~~~~~~~-~~~~~i~~ai~~a~~~g~~VIN 111 (267)
T cd07476 43 ACQDGGASAHGTHVASLIFGQPCS----------SVEGIAPLCRGLNIPIFAEDRRG-CSQLDLARAINLALEQGAHIIN 111 (267)
T ss_pred CCCCCCCCCcHHHHHHHHhcCCCC----------CceeECcCCeEEEEEEEeCCCCC-CCHHHHHHHHHHHHHCCCCEEE
Confidence 112456789999999999987422 24899999999999999876531 3467899999999999999999
Q ss_pred EccCCCCC-CCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeEEEEeCCceEEEeeee
Q 037455 290 LSLAFPET-TFDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIGKS 368 (755)
Q Consensus 290 ~SlG~~~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g~~ 368 (755)
||||.... ......+..++..+.++|+++|+||||+|.....++...+++|+||+...
T Consensus 112 ~S~G~~~~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~--------------------- 170 (267)
T cd07476 112 ISGGRLTQTGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDD--------------------- 170 (267)
T ss_pred ecCCcCCCCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecC---------------------
Confidence 99997542 23345678888889999999999999999887778888999999997321
Q ss_pred ccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCCCC
Q 037455 369 VYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSPE 448 (755)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~~ 448 (755)
T Consensus 171 -------------------------------------------------------------------------------- 170 (267)
T cd07476 171 -------------------------------------------------------------------------------- 170 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEeeecCC
Q 037455 449 VFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPN 528 (755)
Q Consensus 449 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa~~~~ 528 (755)
.+.++.||+||+.. .||||+|||.+|+++.+.+
T Consensus 171 ------------------------------------------~~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~~ 203 (267)
T cd07476 171 ------------------------------------------DGLPLKFSNWGADY-----RKKGILAPGENILGAALGG 203 (267)
T ss_pred ------------------------------------------CCCeeeecCCCCCC-----CCceEEecCCCceeecCCC
Confidence 12456799999864 3889999999999998764
Q ss_pred CCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCC----CCHHHHHHHHHcccccccc
Q 037455 529 NPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRD----WSSAAIRSALMTTADVLDN 588 (755)
Q Consensus 529 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~----ls~~~ik~~L~~TA~~~~~ 588 (755)
.|..++|||||||||||++|||+|++|. ++|++||++|++||+++..
T Consensus 204 -------------~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~ 254 (267)
T cd07476 204 -------------EVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDP 254 (267)
T ss_pred -------------CeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCC
Confidence 7999999999999999999999999887 8999999999999999854
No 10
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.4e-45 Score=391.49 Aligned_cols=290 Identities=39% Similarity=0.533 Sum_probs=218.2
Q ss_pred CCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCC-CCC-CCCCCCCCC
Q 037455 137 GSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGL-NIS-TTDDYDSPR 214 (755)
Q Consensus 137 G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~-~~~-~~~~~~~~~ 214 (755)
|+||+|||||+|||++||+|.+.. ..+.++...++|......... ... .........
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG---------------------FPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAG 59 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC---------------------CCCCceeeeeECccCCCCcccccccccccccCCCC
Confidence 899999999999999999997531 123355555555443211000 000 000111245
Q ss_pred CCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCcEEEEccCC
Q 037455 215 DFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAF 294 (755)
Q Consensus 215 d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~ 294 (755)
|..+|||||||+|+|...+. ..+.||||+|+|+.+|+++..+. +...+++++|+|+++++++|||||||.
T Consensus 60 ~~~~HGT~vAgiiag~~~n~--------~~~~Giap~a~i~~~~~~~~~~~--~~~~~~~~ai~~a~~~~~~Iin~S~g~ 129 (295)
T cd07474 60 DATGHGTHVAGIIAGNGVNV--------GTIKGVAPKADLYAYKVLGPGGS--GTTDVIIAAIEQAVDDGMDVINLSLGS 129 (295)
T ss_pred CCCCcHHHHHHHHhcCCCcc--------CceEeECCCCeEEEEEeecCCCC--CCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 68899999999999985442 23489999999999999985554 788899999999999999999999998
Q ss_pred CCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCcc--ccCCCceEEeccccccceeeEEEEeCCceEEEeeeeccCC
Q 037455 295 PETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYSI--RNGAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSVYPE 372 (755)
Q Consensus 295 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g~~~~~~ 372 (755)
.... ..+.+..+++++.++|+++|+||||+|...... +...+++|+||+.....
T Consensus 130 ~~~~-~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~----------------------- 185 (295)
T cd07474 130 SVNG-PDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVAD----------------------- 185 (295)
T ss_pred CCCC-CCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccC-----------------------
Confidence 6432 356788888899999999999999998765443 56788999999843100
Q ss_pred CCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCCCCCccc
Q 037455 373 NLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSPEVFNM 452 (755)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~~~~~~ 452 (755)
T Consensus 186 -------------------------------------------------------------------------------- 185 (295)
T cd07474 186 -------------------------------------------------------------------------------- 185 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCC-CCCCCCCCcccCeeEeCCCcEEeeecCCCCC
Q 037455 453 PFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSR-GPSLRSPWILKPDILAPGVDILAAWVPNNPW 531 (755)
Q Consensus 453 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~-Gp~~~~~g~lKPDI~APG~~I~sa~~~~~~~ 531 (755)
.........|+++ |+... +.+||||+|||++|++++....
T Consensus 186 -----------------------------------~~~~~~~~~~~s~~~~~~~--~~~kpdv~apG~~i~~~~~~~~-- 226 (295)
T cd07474 186 -----------------------------------VAEADTVGPSSSRGPPTSD--SAIKPDIVAPGVDIMSTAPGSG-- 226 (295)
T ss_pred -----------------------------------cCCCCceeccCCCCCCCCC--CCcCCCEECCcCceEeeccCCC--
Confidence 0011123344454 45543 7899999999999999987742
Q ss_pred CCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHccccccccCCcccccCCCCCCCCCCcccccc
Q 037455 532 QPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLDFGAGH 611 (755)
Q Consensus 532 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~ 611 (755)
..|..++|||||||+|||++|||+|++|.|++++||++|++||++....+. ..+++..+|+|+
T Consensus 227 ---------~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~--------~~~~~~~~G~G~ 289 (295)
T cd07474 227 ---------TGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG--------VVYPVSRQGAGR 289 (295)
T ss_pred ---------CceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC--------CcCChhccCcce
Confidence 279999999999999999999999999999999999999999998764421 223456999999
Q ss_pred cCcCcc
Q 037455 612 INPNKA 617 (755)
Q Consensus 612 in~~~A 617 (755)
||+.+|
T Consensus 290 l~~~~A 295 (295)
T cd07474 290 VDALRA 295 (295)
T ss_pred eccccC
Confidence 999987
No 11
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=1.8e-45 Score=389.74 Aligned_cols=269 Identities=22% Similarity=0.312 Sum_probs=189.0
Q ss_pred CccEEEEEcccccCCCCCCcCCCCCCCCc-ccccceeccccccccccCceeeeeeecccccccc----CCCCC------C
Q 037455 138 SDIIVGILDTGIWPESKSYDDRGMPPVPE-RWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQN----GLNIS------T 206 (755)
Q Consensus 138 ~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~-~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~----~~~~~------~ 206 (755)
++|+|||||||||++||+|++.-+....+ ..+|....+.+|..+ +++++|...+... +.+.+ .
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~dd------~~g~~f~~~~~~~~~~~~~~~~~~~~~~g 74 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYIDD------VNGWNFLGQYDPRRIVGDDPYDLTEKGYG 74 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCCCCccCCCCCcccc------ccCeeccCCcccccccccCcccccccccc
Confidence 68999999999999999998652111000 011111122222111 2344443311100 00000 0
Q ss_pred CCCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCc
Q 037455 207 TDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVD 286 (755)
Q Consensus 207 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~d 286 (755)
..+...+.+..+|||||||||+|...+.. | +.||||+|+|+.+|++.... ....++++||+||++.|++
T Consensus 75 ~~~~~~~~~~~gHGT~VAGiIaa~~~n~~---g-----~~GvAp~a~i~~~k~~~~g~---~~~~~i~~Ai~~a~~~g~~ 143 (291)
T cd07483 75 NNDVNGPISDADHGTHVAGIIAAVRDNGI---G-----IDGVADNVKIMPLRIVPNGD---ERDKDIANAIRYAVDNGAK 143 (291)
T ss_pred ccccCCCCCCCCcHHHHHHHHhCcCCCCC---c-----eEEECCCCEEEEEEEecCCC---cCHHHHHHHHHHHHHCCCc
Confidence 11223355789999999999999864421 2 48999999999999986544 5778999999999999999
Q ss_pred EEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCc---cc--------cCCCceEEeccccccceeeEEE
Q 037455 287 IMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYS---IR--------NGAPWITAVGAGTVDREFAAHV 355 (755)
Q Consensus 287 VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~--------~~~p~vitVga~~~~~~~~~~~ 355 (755)
|||||||..... ....+..++..+.++|+++|+||||+|..... ++ ...+++|+||+....
T Consensus 144 IiN~S~G~~~~~-~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~------- 215 (291)
T cd07483 144 VINMSFGKSFSP-NKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKK------- 215 (291)
T ss_pred EEEeCCCCCCCC-ccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeecccc-------
Confidence 999999975322 23456777888899999999999999864321 11 123455666652210
Q ss_pred EeCCceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEE
Q 037455 356 TLGNEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGA 435 (755)
Q Consensus 356 ~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~ 435 (755)
T Consensus 216 -------------------------------------------------------------------------------- 215 (291)
T cd07483 216 -------------------------------------------------------------------------------- 215 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeE
Q 037455 436 IFSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDIL 515 (755)
Q Consensus 436 i~~n~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~ 515 (755)
.....++.||++|+. +|||+
T Consensus 216 -----------------------------------------------------~~~~~~~~~Sn~G~~-------~vdi~ 235 (291)
T cd07483 216 -----------------------------------------------------YENNLVANFSNYGKK-------NVDVF 235 (291)
T ss_pred -----------------------------------------------------CCcccccccCCCCCC-------ceEEE
Confidence 011246889999974 45999
Q ss_pred eCCCcEEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 037455 516 APGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTAD 584 (755)
Q Consensus 516 APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~ 584 (755)
|||.+|+++.+.+ .|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 236 APG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 236 APGERIYSTTPDN-------------EYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred eCCCCeEeccCcC-------------CeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 9999999997764 8999999999999999999999999999999999999999984
No 12
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.7e-45 Score=378.68 Aligned_cols=237 Identities=28% Similarity=0.354 Sum_probs=191.9
Q ss_pred cEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCCCCCCCCCCCC
Q 037455 140 IIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRDFFGH 219 (755)
Q Consensus 140 v~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~gH 219 (755)
|+|||||||||.+||+|.++. +..+++.. ....|..+|
T Consensus 1 V~VavIDsGvd~~hp~l~~~~---------------------------~~~~~~~~---------------~~~~~~~~H 38 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVV---------------------------IARLFFAG---------------PGAPAPSAH 38 (239)
T ss_pred CEEEEEeCCCCCCCcccccCc---------------------------cccccCCC---------------CCCCCCCCC
Confidence 789999999999999997531 11111110 124567899
Q ss_pred chhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCC-CCCChhHHHHHHHHHHhCCCcEEEEccCCCCCC
Q 037455 220 GTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDN-LAAAETDVLAGMDQAIADGVDIMSLSLAFPETT 298 (755)
Q Consensus 220 GThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~-~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~ 298 (755)
||||||||+|+..+. .||||+|+|+.+|++...+. ..++..++++||+||++.|++|||||||...
T Consensus 39 GT~vAgiia~~~~~~-----------~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~-- 105 (239)
T cd05561 39 GTAVASLLAGAGAQR-----------PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP-- 105 (239)
T ss_pred HHHHHHHHhCCCCCC-----------cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC--
Confidence 999999999975321 69999999999999986431 1157788999999999999999999999742
Q ss_pred CCCCHHHHHHHHHHhCCcEEEEecCCCCCCC-CccccCCCceEEeccccccceeeEEEEeCCceEEEeeeeccCCCCCCc
Q 037455 299 FDENPIAIGAFAALKRGIFVACSAGNSGPRP-YSIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSVYPENLFVS 377 (755)
Q Consensus 299 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~ 377 (755)
...+..++.++.++|+++|+||||+|... ..+++..+++|+|++.+
T Consensus 106 --~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~------------------------------- 152 (239)
T cd05561 106 --NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVD------------------------------- 152 (239)
T ss_pred --CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeec-------------------------------
Confidence 35677888899999999999999999753 35677788999998732
Q ss_pred eeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCCCCCccccEEEE
Q 037455 378 REPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSPEVFNMPFVAV 457 (755)
Q Consensus 378 ~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~~~~~~p~~~i 457 (755)
T Consensus 153 -------------------------------------------------------------------------------- 152 (239)
T cd05561 153 -------------------------------------------------------------------------------- 152 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEeeecCCCCCCCCCCC
Q 037455 458 NLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDD 537 (755)
Q Consensus 458 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa~~~~~~~~~~~~~ 537 (755)
..+.++.||++|+.. ||+|||.+|+++.+.+
T Consensus 153 --------------------------------~~~~~~~~s~~g~~~--------di~ApG~~i~~~~~~~--------- 183 (239)
T cd05561 153 --------------------------------ARGRLYREANRGAHV--------DFAAPGVDVWVAAPGG--------- 183 (239)
T ss_pred --------------------------------CCCCccccCCCCCcc--------eEEccccceecccCCC---------
Confidence 113567899999876 9999999999976653
Q ss_pred CcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHccccccccCCcccccCCCCCCCCCCccccc
Q 037455 538 YLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLDFGAG 610 (755)
Q Consensus 538 ~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G 610 (755)
.|..++|||||||||||++|||+|++| ++++|||++|++||+++. .+..+..||||
T Consensus 184 ----~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g------------~~~~d~~~G~G 239 (239)
T cd05561 184 ----GYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLG------------PPGRDPVFGYG 239 (239)
T ss_pred ----CEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccC------------CCCcCCCcCCC
Confidence 899999999999999999999999999 999999999999999773 34455689998
No 13
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=8.2e-45 Score=391.79 Aligned_cols=223 Identities=27% Similarity=0.265 Sum_probs=166.3
Q ss_pred CCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCcEEEEccC
Q 037455 214 RDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLA 293 (755)
Q Consensus 214 ~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~dVIn~SlG 293 (755)
.|+.+|||||||||||+..++ ..+.||||+|+|+.+|+++......+...++++||++|++.|++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~~--------~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPEE--------PERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCCC--------CceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 478899999999999985332 235899999999999998654321123457899999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHH-HHhCCcEEEEecCCCCCCCCcc--cc-CCCceEEeccccccceeeEEEEeCCceEEEeeeec
Q 037455 294 FPETTFDENPIAIGAFA-ALKRGIFVACSAGNSGPRPYSI--RN-GAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSV 369 (755)
Q Consensus 294 ~~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~g~~~~~~--~~-~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g~~~ 369 (755)
..........+..++.+ +.++|+++|+||||+|+...+. ++ ..+++|+|||..........+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~y-------------- 319 (412)
T cd04857 254 EATHWPNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAEY-------------- 319 (412)
T ss_pred cCCCCccchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCcccccc--------------
Confidence 86532222234444444 4568999999999999876654 32 468999999843211100000
Q ss_pred cCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCCCCC
Q 037455 370 YPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSPEV 449 (755)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~~~ 449 (755)
.+
T Consensus 320 ----------~~-------------------------------------------------------------------- 321 (412)
T cd04857 320 ----------SL-------------------------------------------------------------------- 321 (412)
T ss_pred ----------cc--------------------------------------------------------------------
Confidence 00
Q ss_pred ccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEeeecCCC
Q 037455 450 FNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNN 529 (755)
Q Consensus 450 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa~~~~~ 529 (755)
.....+.++.||||||+.+ |++||||+|||+.|.+.-....
T Consensus 322 -------------------------------------~~~~~~~~~~fSSrGP~~d--G~~~pdI~APG~~I~s~p~~~~ 362 (412)
T cd04857 322 -------------------------------------REKLPGNQYTWSSRGPTAD--GALGVSISAPGGAIASVPNWTL 362 (412)
T ss_pred -------------------------------------ccccCCccccccccCCccc--CCcCceEEeCCCcEEEcccCCC
Confidence 0011346789999999997 8999999999999987522111
Q ss_pred CCCCCCCCCcccceeeeccccchhhHHHHHHHHHHh----hCCCCCHHHHHHHHHcccccc
Q 037455 530 PWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKA----THRDWSSAAIRSALMTTADVL 586 (755)
Q Consensus 530 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~ls~~~ik~~L~~TA~~~ 586 (755)
..|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 363 -----------~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 363 -----------QGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred -----------CCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 2789999999999999999999975 478999999999999999864
No 14
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.9e-45 Score=380.99 Aligned_cols=246 Identities=28% Similarity=0.376 Sum_probs=196.6
Q ss_pred ccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCCCCCCCCCCC
Q 037455 139 DIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRDFFG 218 (755)
Q Consensus 139 Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 218 (755)
||+|||||||||++||+|..... ..+.++.+.++|.+... ....|..+
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~--------------------~~~~~i~~~~~~~~~~~------------~~~~~~~~ 48 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHL--------------------FKNLRILGEYDFVDNSN------------NTNYTDDD 48 (261)
T ss_pred CCEEEEEccCCCccCcchhhhcc--------------------ccCCceeeeecCccCCC------------CCCCCCCC
Confidence 79999999999999999952100 13446777777765421 01257889
Q ss_pred CchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCcEEEEccCCCCCC
Q 037455 219 HGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPETT 298 (755)
Q Consensus 219 HGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~ 298 (755)
|||||||||+|+.. +.+.||||+|+|+.+|+............+++.|++|+.+.+++|||||||.....
T Consensus 49 HGT~vagiia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~ 118 (261)
T cd07493 49 HGTAVLSTMAGYTP----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFD 118 (261)
T ss_pred chhhhheeeeeCCC----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCC
Confidence 99999999999742 22589999999999999765432113456788999999999999999999986532
Q ss_pred CC------------CCHHHHHHHHHHhCCcEEEEecCCCCCC---CCccccCCCceEEeccccccceeeEEEEeCCceEE
Q 037455 299 FD------------ENPIAIGAFAALKRGIFVACSAGNSGPR---PYSIRNGAPWITAVGAGTVDREFAAHVTLGNEELT 363 (755)
Q Consensus 299 ~~------------~~~~~~a~~~a~~~Gi~vV~AAGN~g~~---~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~ 363 (755)
.. ...+..+++.+.++|+++|+||||+|.. ....+...+++|+||+..
T Consensus 119 ~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~----------------- 181 (261)
T cd07493 119 NPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVD----------------- 181 (261)
T ss_pred CcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEec-----------------
Confidence 21 1356778888999999999999999977 345677789999999732
Q ss_pred EeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCC
Q 037455 364 VIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQ 443 (755)
Q Consensus 364 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~ 443 (755)
T Consensus 182 -------------------------------------------------------------------------------- 181 (261)
T cd07493 182 -------------------------------------------------------------------------------- 181 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEe
Q 037455 444 HLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILA 523 (755)
Q Consensus 444 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~s 523 (755)
..+.++.||++||+.+ +++||||+|||.+|++
T Consensus 182 ----------------------------------------------~~~~~~~~S~~G~~~~--~~~~pdi~a~G~~~~~ 213 (261)
T cd07493 182 ----------------------------------------------ANGNKASFSSIGPTAD--GRLKPDVMALGTGIYV 213 (261)
T ss_pred ----------------------------------------------cCCCCCccCCcCCCCC--CCcCCceEecCCCeEE
Confidence 1135678999999986 7999999999999998
Q ss_pred eecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 037455 524 AWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTAD 584 (755)
Q Consensus 524 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~ 584 (755)
..... .|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 214 ~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 214 INGDG-------------NITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred EcCCC-------------cEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 54432 7899999999999999999999999999999999999999985
No 15
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=1.2e-44 Score=379.18 Aligned_cols=247 Identities=34% Similarity=0.388 Sum_probs=195.0
Q ss_pred CCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCCCCCCCCC
Q 037455 137 GSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRDF 216 (755)
Q Consensus 137 G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~d~ 216 (755)
|+||+|||||+|||++||+|.+. |++.... .+ ...++..+ .......+.|.
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~~-----------~~------~~~~~~~d----~~~~~~~~~d~ 51 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGGG-----------SA------DHDYNWFD----PVGNTPLPYDD 51 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCCC-----------Cc------cccccccc----CCCCCCCCCCC
Confidence 89999999999999999999863 1110000 00 00111000 01112346678
Q ss_pred CCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHh------------CC
Q 037455 217 FGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIA------------DG 284 (755)
Q Consensus 217 ~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~------------~g 284 (755)
.+|||||||||+|..... ...||||+|+|+.+|+++..+ +...+++++++++++ .+
T Consensus 52 ~~HGT~vagii~g~~~~~---------~~~GvAp~a~i~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 119 (264)
T cd07481 52 NGHGTHTMGTMVGNDGDG---------QQIGVAPGARWIACRALDRNG---GNDADYLRCAQWMLAPTDSAGNPADPDLA 119 (264)
T ss_pred CCchhhhhhheeecCCCC---------CceEECCCCeEEEEEeecCCC---CcHHHHHHHHHHHHhcccccccccccccC
Confidence 899999999999874321 137999999999999998776 788899999999975 78
Q ss_pred CcEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCC---ccccCCCceEEeccccccceeeEEEEeCCce
Q 037455 285 VDIMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPY---SIRNGAPWITAVGAGTVDREFAAHVTLGNEE 361 (755)
Q Consensus 285 ~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~g~ 361 (755)
++|||||||.... ....+..++..+.++|++||+||||++.... ..+...+++|+||+.+
T Consensus 120 ~~Iin~S~G~~~~--~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~--------------- 182 (264)
T cd07481 120 PDVINNSWGGPSG--DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATD--------------- 182 (264)
T ss_pred CeEEEeCCCcCCC--CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecC---------------
Confidence 9999999998643 2455666777888899999999999986543 2566788999999732
Q ss_pred EEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCC
Q 037455 362 LTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADS 441 (755)
Q Consensus 362 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~ 441 (755)
T Consensus 183 -------------------------------------------------------------------------------- 182 (264)
T cd07481 183 -------------------------------------------------------------------------------- 182 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcE
Q 037455 442 RQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDI 521 (755)
Q Consensus 442 g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I 521 (755)
..+.++.||++||... +++||||+|||.+|
T Consensus 183 ------------------------------------------------~~~~~~~~S~~g~~~~--~~~~~dv~ApG~~i 212 (264)
T cd07481 183 ------------------------------------------------RNDVLADFSSRGPSTY--GRIKPDISAPGVNI 212 (264)
T ss_pred ------------------------------------------------CCCCCccccCCCCCCC--CCcCceEEECCCCe
Confidence 1235688999999986 79999999999999
Q ss_pred EeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCC--CCHHHHHHHHHcccc
Q 037455 522 LAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRD--WSSAAIRSALMTTAD 584 (755)
Q Consensus 522 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~--ls~~~ik~~L~~TA~ 584 (755)
.++.+.+ .|..++|||||||+|||++|||+|++|+ +++.|||++|++||+
T Consensus 213 ~s~~~~~-------------~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 213 RSAVPGG-------------GYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred EEecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 9998774 7999999999999999999999999999 999999999999985
No 16
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-45 Score=375.70 Aligned_cols=334 Identities=26% Similarity=0.391 Sum_probs=255.9
Q ss_pred CCCCeEEEEECCCCCCCCccchHHHHHHHhhccCCCCC--------CCCC---CC-ceEEEec--c-ceeEEEEEeCHHH
Q 037455 28 GDRKTYIIHMDKAAMPAPFSHHHHWYMSVLSSLSSSDD--------GDGD---AP-THLYTYN--H-VMDGFSAVLSKNQ 92 (755)
Q Consensus 28 ~~~~~yIV~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~---~~-~v~~~y~--~-~~ng~s~~l~~~~ 92 (755)
..+.+|||.|++.......+.+.+|++.........-. +..+ .. .+.+.|. . +|+|+.-..+.+-
T Consensus 78 ~~~~~YiV~f~~~~~q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ft~~~ 157 (501)
T KOG1153|consen 78 ALPSRYIVVFKPDASQQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYFTGES 157 (501)
T ss_pred ccccceEEEeCCCccHHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhccccccccce
Confidence 35689999999766655566666766654332221100 0000 00 1333333 2 7888888999999
Q ss_pred HHHhhcCCCeEEEEeceeecccc-----ccCCccccccccCC-------CC----cCCCCCCccEEEEEcccccCCCCCC
Q 037455 93 LEQLQKMPGHHATYLESFGHLHT-----TRTPQFLGLKKHAG-------VW----PAAGFGSDIIVGILDTGIWPESKSY 156 (755)
Q Consensus 93 ~~~L~~~~~V~~v~~~~~~~~~~-----~~~~~~~g~~~~~~-------~~----~~~~~G~Gv~VgVIDtGid~~Hp~f 156 (755)
+..+++.|-++.++++..+.... .+....|++.++.. .| ..-..|+||...|+||||+..||||
T Consensus 158 v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv~DTGVni~H~dF 237 (501)
T KOG1153|consen 158 VCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYVLDTGVNIEHPDF 237 (501)
T ss_pred eeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEEeccccccccccc
Confidence 99999999999999988776643 23334466654321 11 1223699999999999999999999
Q ss_pred cCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCCCCCCCCCCCCchhhhhhhccCCCCCCc
Q 037455 157 DDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRDFFGHGTHTSSTIGGSRVQDVD 236 (755)
Q Consensus 157 ~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~ 236 (755)
.++ +.| |..+++ .....|++||||||||+|++..
T Consensus 238 egR------a~w------Ga~i~~-----------------------------~~~~~D~nGHGTH~AG~I~sKt----- 271 (501)
T KOG1153|consen 238 EGR------AIW------GATIPP-----------------------------KDGDEDCNGHGTHVAGLIGSKT----- 271 (501)
T ss_pred ccc------eec------ccccCC-----------------------------CCcccccCCCcceeeeeeeccc-----
Confidence 875 223 222111 0124589999999999999884
Q ss_pred ccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhC---------CCcEEEEccCCCCCCCCCCHHHHH
Q 037455 237 HFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIAD---------GVDIMSLSLAFPETTFDENPIAIG 307 (755)
Q Consensus 237 ~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~---------g~dVIn~SlG~~~~~~~~~~~~~a 307 (755)
.|||.+++|+++||++++|+ ++.+++++++|++++. +..|.|||+|+.. .-.+..|
T Consensus 272 ---------~GvAK~s~lvaVKVl~~dGs--Gt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~~----S~aLn~A 336 (501)
T KOG1153|consen 272 ---------FGVAKNSNLVAVKVLRSDGS--GTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGFR----SAALNMA 336 (501)
T ss_pred ---------cccccccceEEEEEeccCCc--EeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCcc----cHHHHHH
Confidence 79999999999999999998 9999999999999986 4679999999953 4568888
Q ss_pred HHHHHhCCcEEEEecCCCCCCCC-ccccCCCceEEeccccccceeeEEEEeCCceEEEeeeeccCCCCCCceeeEEeccC
Q 037455 308 AFAALKRGIFVACSAGNSGPRPY-SIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSVYPENLFVSREPIYFGYG 386 (755)
Q Consensus 308 ~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~ 386 (755)
+++|.+.|+++++||||+..+.+ +.|+.+..+|||||++.
T Consensus 337 V~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~--------------------------------------- 377 (501)
T KOG1153|consen 337 VNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTK--------------------------------------- 377 (501)
T ss_pred HHHHhhcCeEEEEcCCCcchhhhccCcccccccEEeccccc---------------------------------------
Confidence 89999999999999999997765 66788999999999542
Q ss_pred CCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCCCCCccccEEEEeccchHHHH
Q 037455 387 NRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSPEVFNMPFVAVNLKDGELVK 466 (755)
Q Consensus 387 ~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~~~~~~p~~~i~~~~g~~l~ 466 (755)
T Consensus 378 -------------------------------------------------------------------------------- 377 (501)
T KOG1153|consen 378 -------------------------------------------------------------------------------- 377 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEeeecCCCCCCCCCCCCcccceeee
Q 037455 467 KYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLL 546 (755)
Q Consensus 467 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~ 546 (755)
.+.++.||+||+|. ||.|||.+|+|+|.+... ....+
T Consensus 378 ------------------------~D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~~-----------at~il 414 (501)
T KOG1153|consen 378 ------------------------NDTIAFFSNWGKCV--------DIFAPGVNILSSWIGSNN-----------ATAIL 414 (501)
T ss_pred ------------------------ccchhhhcCcccee--------eeecCchhhhhhhhcCcc-----------chhee
Confidence 24789999999999 999999999999998643 67899
Q ss_pred ccccchhhHHHHHHHHHHhhCCC---------CCHHHHHHHHHcccc
Q 037455 547 SGTSMSCPHAAAIAALVKATHRD---------WSSAAIRSALMTTAD 584 (755)
Q Consensus 547 sGTSmAaP~VAG~aALl~q~~p~---------ls~~~ik~~L~~TA~ 584 (755)
||||||+|||||++|..+.++|. .++.++|..+..=..
T Consensus 415 SGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 415 SGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred ecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 99999999999999999999883 378888877766544
No 17
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=7.5e-44 Score=375.06 Aligned_cols=264 Identities=27% Similarity=0.287 Sum_probs=202.1
Q ss_pred CCCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCC
Q 037455 129 GVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTD 208 (755)
Q Consensus 129 ~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 208 (755)
.+|..+++|+||+|||||||||++||+|.+.... ..+.. ....+.+... ...
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~-------------~~~~~------~~~~~~~~~~---------~~~ 52 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDG-------------DGYDP------AVNGYNFVPN---------VGD 52 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCC-------------CCccc------ccCCcccccc---------cCC
Confidence 3799999999999999999999999999865110 00000 0000001000 001
Q ss_pred CCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCcEE
Q 037455 209 DYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIM 288 (755)
Q Consensus 209 ~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~dVI 288 (755)
......|..+|||||||||+|...+.....|++ .+.|+||+|+|+.+|++...+. ....+++++|+|+++.|++||
T Consensus 53 ~~~~~~~~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~--~~~~~~~~ai~~a~~~g~~Vi 128 (273)
T cd07485 53 IDNDVSVGGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYY--VGDDAVAAAIVYAADNGAVIL 128 (273)
T ss_pred cCCCCCCCCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCC--ccHHHHHHHHHHHHHcCCcEE
Confidence 122345678999999999999764433222222 2367999999999999987654 678889999999999999999
Q ss_pred EEccCCCCCCCCCCHHHHHHHHHHhC-------CcEEEEecCCCCCCCCccccCCCceEEeccccccceeeEEEEeCCce
Q 037455 289 SLSLAFPETTFDENPIAIGAFAALKR-------GIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVTLGNEE 361 (755)
Q Consensus 289 n~SlG~~~~~~~~~~~~~a~~~a~~~-------Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~ 361 (755)
|||||......+...+..++..+.++ |+++|+||||++......+...+++|+|++.+.
T Consensus 129 n~S~g~~~~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~-------------- 194 (273)
T cd07485 129 QNSWGGTGGGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDT-------------- 194 (273)
T ss_pred EecCCCCCccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccC--------------
Confidence 99999865434556677788888888 999999999999887777888899999997321
Q ss_pred EEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCC
Q 037455 362 LTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADS 441 (755)
Q Consensus 362 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~ 441 (755)
T Consensus 195 -------------------------------------------------------------------------------- 194 (273)
T cd07485 195 -------------------------------------------------------------------------------- 194 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCC-c
Q 037455 442 RQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGV-D 520 (755)
Q Consensus 442 g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~-~ 520 (755)
.+.++.||++|+.. ||+|||. .
T Consensus 195 -------------------------------------------------~~~~~~~S~~g~~~--------~i~apG~~~ 217 (273)
T cd07485 195 -------------------------------------------------NDNKASFSNYGRWV--------DIAAPGVGT 217 (273)
T ss_pred -------------------------------------------------CCCcCccccCCCce--------EEEeCCCCc
Confidence 13567899999876 9999999 8
Q ss_pred EEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCC-CCHHHHHHHHHcc
Q 037455 521 ILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRD-WSSAAIRSALMTT 582 (755)
Q Consensus 521 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~-ls~~~ik~~L~~T 582 (755)
|+++.+.... .....|..++|||||||+|||++|||+|++|. +++.|||++|++|
T Consensus 218 i~~~~~~~~~-------~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 218 ILSTVPKLDG-------DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred cccccccccC-------CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 9988765411 11137999999999999999999999999999 9999999999986
No 18
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2e-43 Score=370.55 Aligned_cols=257 Identities=32% Similarity=0.493 Sum_probs=204.0
Q ss_pred CCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCCCCCCCCC
Q 037455 137 GSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRDF 216 (755)
Q Consensus 137 G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~d~ 216 (755)
|+||+|+|||+|||++||+|.+.... .+.+.... .......|.
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~---------------------------~~~~~~~~----------~~~~~~~d~ 43 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR---------------------------FADFVNTV----------NGRTTPYDD 43 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc---------------------------cccccccc----------cCCCCCCCC
Confidence 89999999999999999999864111 01111100 112335677
Q ss_pred CCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhC----CCcEEEEcc
Q 037455 217 FGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIAD----GVDIMSLSL 292 (755)
Q Consensus 217 ~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~----g~dVIn~Sl 292 (755)
.+|||||||||+|...+. .+.+.||||+|+|+.+|+++..+. ....++++||+|+++. +++||||||
T Consensus 44 ~~HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~--~~~~~~~~ai~~~~~~~~~~~~~Iin~S~ 114 (264)
T cd07487 44 NGHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSGS--GSESDIIAGIDWVVENNEKYNIRVVNLSL 114 (264)
T ss_pred CCchHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCCC--ccHHHHHHHHHHHHhhccccCceEEEecc
Confidence 899999999999986432 223589999999999999988775 6788999999999998 999999999
Q ss_pred CCCCC-CCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCC--ccccCCCceEEeccccccceeeEEEEeCCceEEEeeeec
Q 037455 293 AFPET-TFDENPIAIGAFAALKRGIFVACSAGNSGPRPY--SIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSV 369 (755)
Q Consensus 293 G~~~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g~~~ 369 (755)
|.... ....+.+..+++++.++|+++|+||||++.... ..+...+++|+||+...+..
T Consensus 115 g~~~~~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~------------------- 175 (264)
T cd07487 115 GAPPDPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP------------------- 175 (264)
T ss_pred CCCCCCCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC-------------------
Confidence 98763 445678888999999999999999999998765 55677889999998432110
Q ss_pred cCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCCCCC
Q 037455 370 YPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSPEV 449 (755)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~~~ 449 (755)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEeeecCCC
Q 037455 450 FNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNN 529 (755)
Q Consensus 450 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa~~~~~ 529 (755)
....++.||++||+.+ +++||||+|||++|+++.+...
T Consensus 176 ----------------------------------------~~~~~~~~s~~G~~~~--~~~~~di~apG~~i~~~~~~~~ 213 (264)
T cd07487 176 ----------------------------------------HDDGISYFSSRGPTGD--GRIKPDVVAPGENIVSCRSPGG 213 (264)
T ss_pred ----------------------------------------CCccccccccCCCCCC--CCcCCCEEccccceEecccccc
Confidence 0024688999999986 8999999999999999866432
Q ss_pred CCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 037455 530 PWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTAD 584 (755)
Q Consensus 530 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~ 584 (755)
.. .......|..++|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 214 ~~----~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 214 NP----GAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred cc----CCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 11 1112247899999999999999999999999999999999999999985
No 19
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.7e-43 Score=374.36 Aligned_cols=266 Identities=23% Similarity=0.184 Sum_probs=186.7
Q ss_pred cEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCCCCCCCCCCCC
Q 037455 140 IIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRDFFGH 219 (755)
Q Consensus 140 v~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~gH 219 (755)
.+|||||||||.+||+|.+. +.....+... ...+.|..||
T Consensus 1 p~VaviDtGi~~~hp~l~~~---------------------------~~~~~~~~~~-------------~~~~~d~~gH 40 (291)
T cd04847 1 PIVCVLDSGINRGHPLLAPA---------------------------LAEDDLDSDE-------------PGWTADDLGH 40 (291)
T ss_pred CEEEEecCCCCCCChhhhhh---------------------------hccccccccC-------------CCCcCCCCCC
Confidence 37999999999999999743 1111111100 0015678999
Q ss_pred chhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCC--CCCCChhHHHHHHHHHHhCC---CcEEEEccCC
Q 037455 220 GTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSND--NLAAAETDVLAGMDQAIADG---VDIMSLSLAF 294 (755)
Q Consensus 220 GThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~~~~i~~ai~~a~~~g---~dVIn~SlG~ 294 (755)
||||||||++..... ....|+||+|+|+.+||+...+ ....+..++++||+|+++.+ ++|||||||.
T Consensus 41 GT~vAgiia~~~~~~--------~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~ 112 (291)
T cd04847 41 GTAVAGLALYGDLTL--------PGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGS 112 (291)
T ss_pred hHHHHHHHHcCcccC--------CCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCC
Confidence 999999999764321 1237999999999999998864 11156778899999999853 4999999999
Q ss_pred CCCCCCC--CHHHHHHHH-HHhCCcEEEEecCCCCCCCCc------------cccCCCceEEeccccccceeeEEEEeCC
Q 037455 295 PETTFDE--NPIAIGAFA-ALKRGIFVACSAGNSGPRPYS------------IRNGAPWITAVGAGTVDREFAAHVTLGN 359 (755)
Q Consensus 295 ~~~~~~~--~~~~~a~~~-a~~~Gi~vV~AAGN~g~~~~~------------~~~~~p~vitVga~~~~~~~~~~~~~~~ 359 (755)
....... ..+..++++ +.++|++||+||||++..... .+..++++|+|||.+........
T Consensus 113 ~~~~~~~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~----- 187 (291)
T cd04847 113 PLPIDDGRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDR----- 187 (291)
T ss_pred CCCccCCCCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCc-----
Confidence 7532222 245555544 568899999999999977543 24567899999985432210000
Q ss_pred ceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEec
Q 037455 360 EELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSA 439 (755)
Q Consensus 360 g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n 439 (755)
..
T Consensus 188 ---------------------------------s~--------------------------------------------- 189 (291)
T cd04847 188 ---------------------------------AR--------------------------------------------- 189 (291)
T ss_pred ---------------------------------cc---------------------------------------------
Confidence 00
Q ss_pred CCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCC
Q 037455 440 DSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGV 519 (755)
Q Consensus 440 ~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~ 519 (755)
.+.......+.||+|||..+ +.+||||+|||+
T Consensus 190 ----------------------------------------------~~~~~~~~~~~fs~~Gp~~~--~~~KPDl~apG~ 221 (291)
T cd04847 190 ----------------------------------------------YSAVGPAPAGATTSSGPGSP--GPIKPDVVAFGG 221 (291)
T ss_pred ----------------------------------------------ccccccccCCCccccCCCCC--CCcCCcEEeeCC
Confidence 00000112344999999986 899999999999
Q ss_pred cEEeeecCCCCCC-----CCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 037455 520 DILAAWVPNNPWQ-----PIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTAD 584 (755)
Q Consensus 520 ~I~sa~~~~~~~~-----~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~ 584 (755)
+|.+..+...... ..........|..++|||||||||||++|||+|++|+++|++||++|++||+
T Consensus 222 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 222 NLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred ceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 9988644211000 0000112248999999999999999999999999999999999999999985
No 20
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=1.4e-42 Score=361.93 Aligned_cols=233 Identities=34% Similarity=0.496 Sum_probs=195.2
Q ss_pred CCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCC
Q 037455 130 VWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDD 209 (755)
Q Consensus 130 ~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~ 209 (755)
.|..+++|+||+|||||+||+++||+|.++ +...++|...
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~---------------------------~~~~~~~~~~------------- 56 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR---------------------------AIWGADFVGG------------- 56 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC---------------------------eeeeeecCCC-------------
Confidence 667789999999999999999999999753 2222222221
Q ss_pred CCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhC-----C
Q 037455 210 YDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIAD-----G 284 (755)
Q Consensus 210 ~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~-----g 284 (755)
.+..|..+|||||||||+++. .||||+|+|+.+|+++..+. ...++++++++++++. +
T Consensus 57 -~~~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~~--~~~~~~~~ai~~~~~~~~~~~~ 119 (255)
T cd04077 57 -DPDSDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNGS--GTLSGIIAGLEWVANDATKRGK 119 (255)
T ss_pred -CCCCCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCCC--cCHHHHHHHHHHHHhcccccCC
Confidence 114578899999999999863 69999999999999988765 6788999999999987 4
Q ss_pred CcEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCC-CccccCCCceEEeccccccceeeEEEEeCCceEE
Q 037455 285 VDIMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRP-YSIRNGAPWITAVGAGTVDREFAAHVTLGNEELT 363 (755)
Q Consensus 285 ~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~ 363 (755)
++|||||||... ...+..++..+.++|+++|+||||+|... ...+...+++|+||+.+.
T Consensus 120 ~~iin~S~g~~~----~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~---------------- 179 (255)
T cd04077 120 PAVANMSLGGGA----STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDS---------------- 179 (255)
T ss_pred CeEEEeCCCCCC----CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCC----------------
Confidence 899999999864 45677788889999999999999999765 455678899999997431
Q ss_pred EeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCC
Q 037455 364 VIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQ 443 (755)
Q Consensus 364 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~ 443 (755)
T Consensus 180 -------------------------------------------------------------------------------- 179 (255)
T cd04077 180 -------------------------------------------------------------------------------- 179 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEe
Q 037455 444 HLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILA 523 (755)
Q Consensus 444 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~s 523 (755)
.+.++.||++||.. ||+|||.+|.+
T Consensus 180 -----------------------------------------------~~~~~~~S~~g~~~--------~i~apG~~i~~ 204 (255)
T cd04077 180 -----------------------------------------------DDARASFSNYGSCV--------DIFAPGVDILS 204 (255)
T ss_pred -----------------------------------------------CCCccCcccCCCCC--------cEEeCCCCeEe
Confidence 12467899999986 89999999999
Q ss_pred eecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHccccc
Q 037455 524 AWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADV 585 (755)
Q Consensus 524 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~ 585 (755)
+..... ..|..++|||||||+|||++|||+|++|++++++||++|++||++
T Consensus 205 ~~~~~~-----------~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 205 AWIGSD-----------TATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred cccCCC-----------CcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 877432 289999999999999999999999999999999999999999974
No 21
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.5e-42 Score=365.85 Aligned_cols=206 Identities=30% Similarity=0.348 Sum_probs=167.3
Q ss_pred CCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHH----------h
Q 037455 213 PRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAI----------A 282 (755)
Q Consensus 213 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~----------~ 282 (755)
..+..+|||||||||+|...++ .| +.||||+|+|+.+|+++..+ .+.+++++|++|++ .
T Consensus 67 ~~~~~~HGT~vAgiiaa~~~~~---~~-----~~GvAp~a~i~~~~v~~~~~---~~~~~i~~a~~~a~~~~~~~~~~~~ 135 (285)
T cd07496 67 VSPSSWHGTHVAGTIAAVTNNG---VG-----VAGVAWGARILPVRVLGKCG---GTLSDIVDGMRWAAGLPVPGVPVNP 135 (285)
T ss_pred CCCCCCCHHHHHHHHhCcCCCC---CC-----ceeecCCCeEEEEEEecCCC---CcHHHHHHHHHHHhccCcCCCcccC
Confidence 4567899999999999986432 12 38999999999999998877 68889999999998 4
Q ss_pred CCCcEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCC-CccccCCCceEEeccccccceeeEEEEeCCce
Q 037455 283 DGVDIMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRP-YSIRNGAPWITAVGAGTVDREFAAHVTLGNEE 361 (755)
Q Consensus 283 ~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~ 361 (755)
++++|||||||..... ...+..++..+.++|++||+||||++... ...+...+++|+||+.+.
T Consensus 136 ~~~~Iin~S~G~~~~~--~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~-------------- 199 (285)
T cd07496 136 NPAKVINLSLGGDGAC--SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDL-------------- 199 (285)
T ss_pred CCCeEEEeCCCCCCCC--CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCC--------------
Confidence 5789999999986421 45778888899999999999999999876 566778899999997321
Q ss_pred EEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCC
Q 037455 362 LTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADS 441 (755)
Q Consensus 362 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~ 441 (755)
T Consensus 200 -------------------------------------------------------------------------------- 199 (285)
T cd07496 200 -------------------------------------------------------------------------------- 199 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcE
Q 037455 442 RQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDI 521 (755)
Q Consensus 442 g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I 521 (755)
.+.++.||++|+.. ||+|||++|
T Consensus 200 -------------------------------------------------~~~~~~~S~~g~~v--------di~apG~~i 222 (285)
T cd07496 200 -------------------------------------------------RGQRASYSNYGPAV--------DVSAPGGDC 222 (285)
T ss_pred -------------------------------------------------CCCcccccCCCCCC--------CEEeCCCCc
Confidence 23568899999976 999999999
Q ss_pred EeeecCCCCCC--CCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHcc
Q 037455 522 LAAWVPNNPWQ--PIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTT 582 (755)
Q Consensus 522 ~sa~~~~~~~~--~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~T 582 (755)
.++........ ..........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 223 ASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred cccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 98876532110 00111122478999999999999999999999999999999999999976
No 22
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=2.6e-42 Score=361.17 Aligned_cols=242 Identities=31% Similarity=0.420 Sum_probs=201.4
Q ss_pred cCCCCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCC
Q 037455 127 HAGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNIST 206 (755)
Q Consensus 127 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~ 206 (755)
+..+|..+ +|+||+|||||+|||++||+|... ++...+++.+.
T Consensus 18 ~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~--------------------------~~~~~~~~~~~---------- 60 (260)
T cd07484 18 APKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV--------------------------KFVLGYDFVDN---------- 60 (260)
T ss_pred hHHHHhhc-CCCCCEEEEEeCCCCCCCcccccC--------------------------CcccceeccCC----------
Confidence 35688888 999999999999999999998422 22223333322
Q ss_pred CCCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCc
Q 037455 207 TDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVD 286 (755)
Q Consensus 207 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~d 286 (755)
...+.|..+|||||||||++...+. ..+.|+||+|+|+.+|+++..+. +...+++++|+++++.+++
T Consensus 61 ---~~~~~d~~~HGT~vagii~~~~~~~--------~~~~Giap~a~l~~~~v~~~~~~--~~~~~~~~ai~~a~~~~~~ 127 (260)
T cd07484 61 ---DSDAMDDNGHGTHVAGIIAAATNNG--------TGVAGVAPKAKIMPVKVLDANGS--GSLADIANGIRYAADKGAK 127 (260)
T ss_pred ---CCCCCCCCCcHHHHHHHHhCccCCC--------CceEeECCCCEEEEEEEECCCCC--cCHHHHHHHHHHHHHCCCe
Confidence 1225578899999999999875332 22489999999999999987665 7788999999999999999
Q ss_pred EEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeEEEEeCCceEEEee
Q 037455 287 IMSLSLAFPETTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIG 366 (755)
Q Consensus 287 VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g 366 (755)
|||||||... ....+..++..+.++|++||+||||+|.....+++..+++|+||+.+.
T Consensus 128 iin~S~g~~~---~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~------------------- 185 (260)
T cd07484 128 VINLSLGGGL---GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQ------------------- 185 (260)
T ss_pred EEEecCCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCC-------------------
Confidence 9999999863 445677788888899999999999999888888889999999997321
Q ss_pred eeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCC
Q 037455 367 KSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLS 446 (755)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~ 446 (755)
T Consensus 186 -------------------------------------------------------------------------------- 185 (260)
T cd07484 186 -------------------------------------------------------------------------------- 185 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEeeec
Q 037455 447 PEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWV 526 (755)
Q Consensus 447 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa~~ 526 (755)
.+.++.||++|+.. |++|||.+|+++.+
T Consensus 186 --------------------------------------------~~~~~~~s~~g~~~--------~~~apG~~i~~~~~ 213 (260)
T cd07484 186 --------------------------------------------DDKRASFSNYGKWV--------DVSAPGGGILSTTP 213 (260)
T ss_pred --------------------------------------------CCCcCCcCCCCCCc--------eEEeCCCCcEeecC
Confidence 12457899999865 99999999999876
Q ss_pred CCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHcccccc
Q 037455 527 PNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVL 586 (755)
Q Consensus 527 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~ 586 (755)
.. .|..++|||||||+|||++||++|++| +++.+||++|++||+++
T Consensus 214 ~~-------------~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 214 DG-------------DYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred CC-------------CEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 63 899999999999999999999999999 99999999999999875
No 23
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.1e-42 Score=359.44 Aligned_cols=253 Identities=35% Similarity=0.398 Sum_probs=188.2
Q ss_pred ccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCCCCCCCCCCC
Q 037455 139 DIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRDFFG 218 (755)
Q Consensus 139 Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 218 (755)
||+|||||+|||++||+|.+. +...++|..+. ........|..+
T Consensus 1 GV~VaviDsGv~~~hp~l~~~---------------------------~~~~~~~~~~~---------~~~~~~~~d~~~ 44 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGR---------------------------VAQWADFDENR---------RISATEVFDAGG 44 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcc---------------------------cCCceeccCCC---------CCCCCCCCCCCC
Confidence 799999999999999999753 11112222110 011223556789
Q ss_pred CchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCcEEEEccCCCCCC
Q 037455 219 HGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPETT 298 (755)
Q Consensus 219 HGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~ 298 (755)
|||||||||+|+..+ +...||||+|+|+.+|++...+ +..++++++|+|+++.+++|||||||.....
T Consensus 45 HGT~vAgiia~~~~~---------~~~~GvAp~a~i~~~~v~~~~~---~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~ 112 (254)
T cd07490 45 HGTHVSGTIGGGGAK---------GVYIGVAPEADLLHGKVLDDGG---GSLSQIIAGMEWAVEKDADVVSMSLGGTYYS 112 (254)
T ss_pred cHHHHHHHHhcCCCC---------CCEEEECCCCEEEEEEEecCCC---CcHHHHHHHHHHHHhCCCCEEEECCCcCCCC
Confidence 999999999998541 2247999999999999998776 6889999999999999999999999986533
Q ss_pred CCCCHHHHHHHHHHh-CCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeEEEEeCCceEEEeeeeccCCCCCCc
Q 037455 299 FDENPIAIGAFAALK-RGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSVYPENLFVS 377 (755)
Q Consensus 299 ~~~~~~~~a~~~a~~-~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~ 377 (755)
.+++..+++.+.+ +|+++|+||||+|......+...+++|+||+.+.........
T Consensus 113 --~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s---------------------- 168 (254)
T cd07490 113 --EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFS---------------------- 168 (254)
T ss_pred --CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCcc----------------------
Confidence 5666666666654 699999999999988777788899999999854321100000
Q ss_pred eeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCCCCCccccEEEE
Q 037455 378 REPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSPEVFNMPFVAV 457 (755)
Q Consensus 378 ~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~~~~~~p~~~i 457 (755)
T Consensus 169 -------------------------------------------------------------------------------- 168 (254)
T cd07490 169 -------------------------------------------------------------------------------- 168 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEeeecCCCCCCCCCCC
Q 037455 458 NLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDD 537 (755)
Q Consensus 458 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa~~~~~~~~~~~~~ 537 (755)
.........++.+|... ....|||++|||.+|+++.....
T Consensus 169 -------------------------------~~g~~~~~~~~~~~~~~-~~~~~~d~~apG~~i~~~~~~~~-------- 208 (254)
T cd07490 169 -------------------------------SFGSSGASLVSAPDSPP-DEYTKPDVAAPGVDVYSARQGAN-------- 208 (254)
T ss_pred -------------------------------CCcccccccccCCCCCc-cCCcCceEEeccCCeEccccCCC--------
Confidence 00001122233333332 25789999999999998652211
Q ss_pred CcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 037455 538 YLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTAD 584 (755)
Q Consensus 538 ~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~ 584 (755)
....|..++|||||||+|||++|||+|++|+|++.+||++|++||+
T Consensus 209 -~~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 209 -GDGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred -CCCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 1237999999999999999999999999999999999999999984
No 24
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.2e-42 Score=363.09 Aligned_cols=252 Identities=25% Similarity=0.314 Sum_probs=182.4
Q ss_pred cCCCCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCC
Q 037455 127 HAGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNIST 206 (755)
Q Consensus 127 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~ 206 (755)
+..+|+++++|+||+|||||||||..|| |...++. + ++ .+..+
T Consensus 10 ~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~-------~---------------~~----~~~~~---------- 52 (298)
T cd07494 10 ATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQ-------V---------------RV----VLAPG---------- 52 (298)
T ss_pred hhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCcc-------c---------------ee----ecCCC----------
Confidence 4679999999999999999999999998 7543110 0 00 00000
Q ss_pred CCCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCc
Q 037455 207 TDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVD 286 (755)
Q Consensus 207 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~d 286 (755)
......|+.||||||||++ .||||+|+|+.+|++++ ..+++++||+||++++++
T Consensus 53 --~~~~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~------~~~~~~~ai~~a~~~g~d 106 (298)
T cd07494 53 --ATDPACDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP------DLVNSVGAFKKAISLSPD 106 (298)
T ss_pred --CCCCCCCCCCcchheeece------------------eEeCCCCeEEEEEccCC------CcHHHHHHHHHHHhcCCC
Confidence 0112467889999999875 69999999999999864 456789999999999999
Q ss_pred EEEEccCCCCCCC----------CCCHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeEEEE
Q 037455 287 IMSLSLAFPETTF----------DENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVT 356 (755)
Q Consensus 287 VIn~SlG~~~~~~----------~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~ 356 (755)
|||||||...... ....+..++.++.++|++||+||||++. .+|+..|++|+||+++.+..
T Consensus 107 VIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~------ 177 (298)
T cd07494 107 IISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDED------ 177 (298)
T ss_pred EEEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCC------
Confidence 9999999864211 1235777888899999999999999974 46888999999998532210
Q ss_pred eCCceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEE
Q 037455 357 LGNEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAI 436 (755)
Q Consensus 357 ~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i 436 (755)
+..
T Consensus 178 ---g~~-------------------------------------------------------------------------- 180 (298)
T cd07494 178 ---GAR-------------------------------------------------------------------------- 180 (298)
T ss_pred ---Ccc--------------------------------------------------------------------------
Confidence 000
Q ss_pred EecCCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCee--
Q 037455 437 FSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDI-- 514 (755)
Q Consensus 437 ~~n~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI-- 514 (755)
......+.|+|. ..+++.|||+
T Consensus 181 ----------------------------------------------------~~~~~~~~~~s~----~~~g~~~pd~~~ 204 (298)
T cd07494 181 ----------------------------------------------------RASSYASGFRSK----IYPGRQVPDVCG 204 (298)
T ss_pred ----------------------------------------------------cccccccCcccc----cCCCCccCcccc
Confidence 000000112111 1236677877
Q ss_pred --------------EeCCCcEEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 037455 515 --------------LAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALM 580 (755)
Q Consensus 515 --------------~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~ 580 (755)
+|||..|.++..... .. ......|..++|||||||||||++|||+|++|.|+++|||.+|+
T Consensus 205 ~~g~~~~~~~~~~~~APG~~i~~~~~~~~-~~----~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~ 279 (298)
T cd07494 205 LVGMLPHAAYLMLPVPPGSQLDRSCAAFP-DG----TPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLN 279 (298)
T ss_pred ccCcCCcccccccccCCCcceeccccCCC-CC----CCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 379999876553210 00 01124799999999999999999999999999999999999999
Q ss_pred cccccccc
Q 037455 581 TTADVLDN 588 (755)
Q Consensus 581 ~TA~~~~~ 588 (755)
+||+++..
T Consensus 280 ~ta~~~~~ 287 (298)
T cd07494 280 KTARDVTK 287 (298)
T ss_pred HhCcccCC
Confidence 99998753
No 25
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=1.5e-41 Score=362.00 Aligned_cols=279 Identities=28% Similarity=0.298 Sum_probs=200.6
Q ss_pred CCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCCCCC
Q 037455 133 AAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDS 212 (755)
Q Consensus 133 ~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~ 212 (755)
++++|+||+|||||||||++||+|.+.... +.. ..++++.....+.. .
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~~------------~~~----~~~~~~~~~~~~~~----------------~ 49 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNFN------------KTN----LFHRKIVRYDSLSD----------------T 49 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCcC------------cCc----cCcccEEEeeccCC----------------C
Confidence 578999999999999999999999764210 001 12233333322221 1
Q ss_pred CCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCcEEEEcc
Q 037455 213 PRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSL 292 (755)
Q Consensus 213 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~dVIn~Sl 292 (755)
..|..+|||||||||+|+..+.... ..+.||||+|+|+.+|++...+. .....++..+++++.+.+++||||||
T Consensus 50 ~~d~~~HGT~vAgiia~~~~~~~~~-----~~~~GvAp~a~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Vin~S~ 123 (293)
T cd04842 50 KDDVDGHGTHVAGIIAGKGNDSSSI-----SLYKGVAPKAKLYFQDIGDTSGN-LSSPPDLNKLFSPMYDAGARISSNSW 123 (293)
T ss_pred CCCCCCCcchhheeeccCCcCCCcc-----cccccccccCeEEEEEeeccCcc-ccCCccHHHHHHHHHHhCCEEEeccC
Confidence 2278999999999999986543211 13489999999999999887652 14566788999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHH-h-CCcEEEEecCCCCCCCC---ccccCCCceEEeccccccceeeEEEEeCCceEEEeee
Q 037455 293 AFPETTFDENPIAIGAFAAL-K-RGIFVACSAGNSGPRPY---SIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIGK 367 (755)
Q Consensus 293 G~~~~~~~~~~~~~a~~~a~-~-~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g~ 367 (755)
|...... ......++.++. + +|+++|+||||+|.... ..+...+++|+||+.+.......
T Consensus 124 G~~~~~~-~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~-------------- 188 (293)
T cd04842 124 GSPVNNG-YTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNG-------------- 188 (293)
T ss_pred CCCCccc-cchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCcccc--------------
Confidence 9875321 233444444443 3 79999999999997764 56778899999998653321000
Q ss_pred eccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCCC
Q 037455 368 SVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSP 447 (755)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~ 447 (755)
..|..
T Consensus 189 -----------------------~~~~~---------------------------------------------------- 193 (293)
T cd04842 189 -----------------------EGGLG---------------------------------------------------- 193 (293)
T ss_pred -----------------------ccccc----------------------------------------------------
Confidence 00000
Q ss_pred CCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEeeecC
Q 037455 448 EVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVP 527 (755)
Q Consensus 448 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa~~~ 527 (755)
.....+.++.||++||+.+ +++||||+|||++|+++.+.
T Consensus 194 ---------------------------------------~~~~~~~~~~~S~~G~~~~--~~~~pdv~ApG~~i~~~~~~ 232 (293)
T cd04842 194 ---------------------------------------QSDNSDTVASFSSRGPTYD--GRIKPDLVAPGTGILSARSG 232 (293)
T ss_pred ---------------------------------------ccCCCCccccccCcCCCCC--CCcCCCEECCCCCeEeccCC
Confidence 0112346899999999986 89999999999999999755
Q ss_pred CCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhC-----C---CCCHHHHHHHHHcccc
Q 037455 528 NNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATH-----R---DWSSAAIRSALMTTAD 584 (755)
Q Consensus 528 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-----p---~ls~~~ik~~L~~TA~ 584 (755)
... ........|..++|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 233 ~~~----~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 233 GGG----IGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred CCC----CCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 310 011112478999999999999999999999985 4 6677899999999985
No 26
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.5e-41 Score=360.01 Aligned_cols=265 Identities=31% Similarity=0.380 Sum_probs=183.5
Q ss_pred cCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCCCC
Q 037455 132 PAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYD 211 (755)
Q Consensus 132 ~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~ 211 (755)
..+++|+||+|||||+|||.+||+|.+.. +..++|.+. .
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~---------------------------~~~~~~~~~--------------~ 40 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRD---------------------------ITTKSFVGG--------------E 40 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCc---------------------------ccCcccCCC--------------C
Confidence 45789999999999999999999997531 111122211 1
Q ss_pred CCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCcEEEEc
Q 037455 212 SPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLS 291 (755)
Q Consensus 212 ~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~dVIn~S 291 (755)
.+.|..+|||||||||+|+..+ +...||||+|+|+.+|++...+. ....++++||+|+++.|++|||||
T Consensus 41 ~~~d~~gHGT~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~--~~~~~i~~ai~~a~~~g~~Vin~S 109 (297)
T cd07480 41 DVQDGHGHGTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDGG--GGDGGILAGIQWAVANGADVISMS 109 (297)
T ss_pred CCCCCCCcHHHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCCCC--CcHHHHHHHHHHHHHcCCCEEEec
Confidence 2457889999999999997543 22379999999999999976654 677789999999999999999999
Q ss_pred cCCCCCCC----------CCCHHHHHHHHH---------------HhCCcEEEEecCCCCCCCCccc-----cCCCceEE
Q 037455 292 LAFPETTF----------DENPIAIGAFAA---------------LKRGIFVACSAGNSGPRPYSIR-----NGAPWITA 341 (755)
Q Consensus 292 lG~~~~~~----------~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~g~~~~~~~-----~~~p~vit 341 (755)
||...... ....+......+ .++|+++|+||||++....... ...+.+++
T Consensus 110 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~ 189 (297)
T cd07480 110 LGADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMG 189 (297)
T ss_pred cCCCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccE
Confidence 99854111 111222222233 6789999999999986533211 11122222
Q ss_pred eccccccceeeEEEEeCCceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHH
Q 037455 342 VGAGTVDREFAAHVTLGNEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVY 421 (755)
Q Consensus 342 Vga~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~ 421 (755)
|++..
T Consensus 190 V~~V~--------------------------------------------------------------------------- 194 (297)
T cd07480 190 VAAVG--------------------------------------------------------------------------- 194 (297)
T ss_pred EEEEC---------------------------------------------------------------------------
Confidence 22210
Q ss_pred HHHHHHHHcCceEEEEecCCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCC
Q 037455 422 QQLEEVRKSGAAGAIFSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRG 501 (755)
Q Consensus 422 ~~~~~~~~~ga~g~i~~n~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~G 501 (755)
..+....|+++.
T Consensus 195 --------------------------------------------------------------------~~~~~~~~~~~~ 206 (297)
T cd07480 195 --------------------------------------------------------------------ALGRTGNFSAVA 206 (297)
T ss_pred --------------------------------------------------------------------CCCCCCCccccC
Confidence 001112233333
Q ss_pred CCCCCCCcccCeeEeCCCcEEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHc
Q 037455 502 PSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMT 581 (755)
Q Consensus 502 p~~~~~g~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~ 581 (755)
+. ...||||+|||.+|+++.+.. .|..++|||||||+|||++|||+|++|.+++.+++.+|+.
T Consensus 207 ~~----~~~~~dv~ApG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~ 269 (297)
T cd07480 207 NF----SNGEVDIAAPGVDIVSAAPGG-------------GYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQA 269 (297)
T ss_pred CC----CCCceEEEeCCCCeEeecCCC-------------cEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHH
Confidence 32 245889999999999988764 8999999999999999999999999999998888877774
Q ss_pred cccccccCCcccccCCCCCCCCCCcccccccCcC
Q 037455 582 TADVLDNAYGMITDKSTGVAGTPLDFGAGHINPN 615 (755)
Q Consensus 582 TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~in~~ 615 (755)
........ . ......+..+|+|++++.
T Consensus 270 ~l~~~~~~-~------~~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 270 RLTAARTT-Q------FAPGLDLPDRGVGLGLAP 296 (297)
T ss_pred HHhhcccC-C------CCCCCChhhcCCceeecC
Confidence 32221000 0 022344568999999875
No 27
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.9e-41 Score=349.39 Aligned_cols=240 Identities=28% Similarity=0.333 Sum_probs=188.5
Q ss_pred cEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCCCCCCCCCCCC
Q 037455 140 IIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRDFFGH 219 (755)
Q Consensus 140 v~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~gH 219 (755)
|+|||||+|||++||+|.+.. ++...+++... ...+.|..+|
T Consensus 1 V~VaviDsGi~~~hp~l~~~~-------------------------~~~~~~~~~~~-------------~~~~~~~~~H 42 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP-------------------------KLVPGWNFVSN-------------NDPTSDIDGH 42 (242)
T ss_pred CEEEEecCCCCCCChhhccCc-------------------------CccCCccccCC-------------CCCCCCCCCC
Confidence 789999999999999997520 11111111111 1124578899
Q ss_pred chhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCcEEEEccCCCCC-C
Q 037455 220 GTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPET-T 298 (755)
Q Consensus 220 GThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~-~ 298 (755)
||||||||+|+..+. ..+.||||+|+|+.+|++...+. +...++.++++|+++.+++|||||||.... .
T Consensus 43 GT~vAgiiag~~~~~--------~~~~Gvap~a~i~~~~~~~~~~~--~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~ 112 (242)
T cd07498 43 GTACAGVAAAVGNNG--------LGVAGVAPGAKLMPVRIADSLGY--AYWSDIAQAITWAADNGADVISNSWGGSDSTE 112 (242)
T ss_pred HHHHHHHHHhccCCC--------ceeEeECCCCEEEEEEEECCCCC--ccHHHHHHHHHHHHHCCCeEEEeccCCCCCCc
Confidence 999999999975322 22489999999999999987654 678899999999999999999999998653 2
Q ss_pred CCCCHHHHHHHHHHh-CCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeEEEEeCCceEEEeeeeccCCCCCCc
Q 037455 299 FDENPIAIGAFAALK-RGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSVYPENLFVS 377 (755)
Q Consensus 299 ~~~~~~~~a~~~a~~-~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~ 377 (755)
.....+..++..+.+ +|+++|+||||+|......++..+++|+||+.+.
T Consensus 113 ~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~------------------------------ 162 (242)
T cd07498 113 SISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDS------------------------------ 162 (242)
T ss_pred hHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCC------------------------------
Confidence 234567777777888 9999999999999887767888999999998331
Q ss_pred eeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCCCCCccccEEEE
Q 037455 378 REPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSPEVFNMPFVAV 457 (755)
Q Consensus 378 ~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~~~~~~p~~~i 457 (755)
T Consensus 163 -------------------------------------------------------------------------------- 162 (242)
T cd07498 163 -------------------------------------------------------------------------------- 162 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEeeecCCCCCCCCCCC
Q 037455 458 NLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDD 537 (755)
Q Consensus 458 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa~~~~~~~~~~~~~ 537 (755)
.+.+++||++||.. |++|||+++.......... ..
T Consensus 163 ---------------------------------~~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~----~~ 197 (242)
T cd07498 163 ---------------------------------NDARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSA----GD 197 (242)
T ss_pred ---------------------------------CCCccCcCCCCCCe--------EEEeCcCCcccCCcccccc----cc
Confidence 13467899999976 9999999998875442111 11
Q ss_pred CcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHcc
Q 037455 538 YLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTT 582 (755)
Q Consensus 538 ~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~T 582 (755)
.....|..++|||||||+|||++|||+|++|+|+++|||++|++|
T Consensus 198 ~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 198 YPGGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred CCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 122478999999999999999999999999999999999999976
No 28
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.8e-40 Score=347.11 Aligned_cols=250 Identities=28% Similarity=0.392 Sum_probs=190.0
Q ss_pred CccEEEEEcccccCCCCCCcCCCCCCCCcccccc---eeccccccccccCceeeeeeeccccccccCCCCCCCCCCCCCC
Q 037455 138 SDIIVGILDTGIWPESKSYDDRGMPPVPERWRGA---CEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPR 214 (755)
Q Consensus 138 ~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~---~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (755)
+||+|||||||||++||+|.++. |... +..+... +. ..|.+....+ +......++.
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~-------~~~~~~~~~~~~~~----~~------~~~~~~~~~~----~~~~~~~~~~ 60 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNM-------WVNPGEIPGNGIDD----DG------NGYVDDIYGW----NFVNNDNDPM 60 (259)
T ss_pred CCCEEEEEeCCCCCCChhhcccc-------ccCcccccccCccc----CC------CCcccCCCcc----cccCCCCCCC
Confidence 68999999999999999998642 2211 1111100 00 0011110000 0011233467
Q ss_pred CCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCcEEEEccCC
Q 037455 215 DFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAF 294 (755)
Q Consensus 215 d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~ 294 (755)
|..+|||||||||+|...+. ..+.||||+|+|+.+|++...+. ++..+++++|+++++.+++|||+|||.
T Consensus 61 d~~~HGT~va~ii~~~~~~~--------~~~~GvAp~a~l~~~~~~~~~~~--~~~~~~~~a~~~a~~~~~~vin~S~G~ 130 (259)
T cd07473 61 DDNGHGTHVAGIIGAVGNNG--------IGIAGVAWNVKIMPLKFLGADGS--GTTSDAIKAIDYAVDMGAKIINNSWGG 130 (259)
T ss_pred CCCCcHHHHHHHHHCcCCCC--------CceEEeCCCCEEEEEEEeCCCCC--cCHHHHHHHHHHHHHCCCeEEEeCCCC
Confidence 88999999999999985432 22489999999999999987765 788899999999999999999999998
Q ss_pred CCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCC---Ccccc--CCCceEEeccccccceeeEEEEeCCceEEEeeeec
Q 037455 295 PETTFDENPIAIGAFAALKRGIFVACSAGNSGPRP---YSIRN--GAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSV 369 (755)
Q Consensus 295 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~---~~~~~--~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g~~~ 369 (755)
... ...+..++.++.++|+++|+||||+|... ..++. ..+++|+||+.+
T Consensus 131 ~~~---~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~----------------------- 184 (259)
T cd07473 131 GGP---SQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATD----------------------- 184 (259)
T ss_pred CCC---CHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecC-----------------------
Confidence 633 56778888899999999999999998762 23333 347788888632
Q ss_pred cCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCCCCC
Q 037455 370 YPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSPEV 449 (755)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~~~ 449 (755)
T Consensus 185 -------------------------------------------------------------------------------- 184 (259)
T cd07473 185 -------------------------------------------------------------------------------- 184 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEeeecCCC
Q 037455 450 FNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNN 529 (755)
Q Consensus 450 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa~~~~~ 529 (755)
..+.++.||++||. +||+.|||.++++..+..
T Consensus 185 ----------------------------------------~~~~~~~~s~~g~~-------~~~~~apG~~~~~~~~~~- 216 (259)
T cd07473 185 ----------------------------------------SNDALASFSNYGKK-------TVDLAAPGVDILSTSPGG- 216 (259)
T ss_pred ----------------------------------------CCCCcCcccCCCCC-------CcEEEeccCCeEeccCCC-
Confidence 11345679999985 459999999999976553
Q ss_pred CCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 037455 530 PWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTAD 584 (755)
Q Consensus 530 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~ 584 (755)
.|..++|||||||+|||++||++|++|.+++.+||++|++||+
T Consensus 217 ------------~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 217 ------------GYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred ------------cEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 8999999999999999999999999999999999999999985
No 29
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.7e-41 Score=350.56 Aligned_cols=244 Identities=19% Similarity=0.181 Sum_probs=173.1
Q ss_pred CCCCcCC-CCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCC
Q 037455 128 AGVWPAA-GFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNIST 206 (755)
Q Consensus 128 ~~~~~~~-~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~ 206 (755)
..+|+.. ..|+||+|+|||+|||.+||||.++... +..+
T Consensus 5 ~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~------------------------------~~~~---------- 44 (277)
T cd04843 5 RYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGIT------------------------------LISG---------- 44 (277)
T ss_pred HHHHHhcCCCCCcEEEEEecCCCCCCChhhcccccc------------------------------ccCC----------
Confidence 4578764 4589999999999999999999754110 0000
Q ss_pred CCCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHh----
Q 037455 207 TDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIA---- 282 (755)
Q Consensus 207 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~---- 282 (755)
..+.|+++|||||||||||..+ ..| +.||||+|+|+.+|+++ .++++++|++|++
T Consensus 45 ----~~~~d~~gHGT~VAGiIaa~~n----~~G-----~~GvAp~a~l~~i~v~~--------~~~~~~ai~~A~~~~~~ 103 (277)
T cd04843 45 ----LTDQADSDHGTAVLGIIVAKDN----GIG-----VTGIAHGAQAAVVSSTR--------VSNTADAILDAADYLSP 103 (277)
T ss_pred ----CCCCCCCCCcchhheeeeeecC----CCc-----eeeeccCCEEEEEEecC--------CCCHHHHHHHHHhccCC
Confidence 0145778999999999998631 112 48999999999999975 2234555666655
Q ss_pred CCCcEEEEccCCCCCCC------CCCHHHHHHHHHHhCCcEEEEecCCCCCCCCcc------------c-cCCCceEEec
Q 037455 283 DGVDIMSLSLAFPETTF------DENPIAIGAFAALKRGIFVACSAGNSGPRPYSI------------R-NGAPWITAVG 343 (755)
Q Consensus 283 ~g~dVIn~SlG~~~~~~------~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~------------~-~~~p~vitVg 343 (755)
.++.+||||||...... ....+..++.++.++|+++|+||||++...... + ...+++|+||
T Consensus 104 ~~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~Vg 183 (277)
T cd04843 104 GDVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVG 183 (277)
T ss_pred CCEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEE
Confidence 45678899999864211 123455677788899999999999998653211 1 1124567776
Q ss_pred cccccceeeEEEEeCCceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHH
Q 037455 344 AGTVDREFAAHVTLGNEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQ 423 (755)
Q Consensus 344 a~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~ 423 (755)
|.+.+
T Consensus 184 A~~~~--------------------------------------------------------------------------- 188 (277)
T cd04843 184 AGSST--------------------------------------------------------------------------- 188 (277)
T ss_pred eccCC---------------------------------------------------------------------------
Confidence 63210
Q ss_pred HHHHHHcCceEEEEecCCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCC
Q 037455 424 LEEVRKSGAAGAIFSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPS 503 (755)
Q Consensus 424 ~~~~~~~ga~g~i~~n~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~ 503 (755)
....++.||++||.
T Consensus 189 ------------------------------------------------------------------~~~~~~~fSn~G~~ 202 (277)
T cd04843 189 ------------------------------------------------------------------TGHTRLAFSNYGSR 202 (277)
T ss_pred ------------------------------------------------------------------CCCccccccCCCCc
Confidence 01136899999997
Q ss_pred CCCCCcccCeeEeCCCcEEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHh----h-CCCCCHHHHHHH
Q 037455 504 LRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKA----T-HRDWSSAAIRSA 578 (755)
Q Consensus 504 ~~~~g~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~-~p~ls~~~ik~~ 578 (755)
. ||+|||++|+++.+....... ......|..++|||||||||||++|||++ + +|+|+++|||++
T Consensus 203 v--------di~APG~~i~s~~~~~~~~~~---~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~ 271 (277)
T cd04843 203 V--------DVYGWGENVTTTGYGDLQDLG---GENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMREL 271 (277)
T ss_pred c--------ceEcCCCCeEecCCCCccccc---CCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHH
Confidence 6 999999999999876432100 11112457899999999999999999975 3 499999999999
Q ss_pred HHcccc
Q 037455 579 LMTTAD 584 (755)
Q Consensus 579 L~~TA~ 584 (755)
|++|+.
T Consensus 272 L~~t~~ 277 (277)
T cd04843 272 LTATGT 277 (277)
T ss_pred HHhcCC
Confidence 999974
No 30
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=3.8e-40 Score=338.27 Aligned_cols=227 Identities=37% Similarity=0.538 Sum_probs=186.9
Q ss_pred ccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCCCCCCCCCCC
Q 037455 139 DIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRDFFG 218 (755)
Q Consensus 139 Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 218 (755)
||+|||||+||+++||+|.+. +...++|.... . ....|..+
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~---------------------------~~~~~~~~~~~-----------~-~~~~~~~~ 41 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN---------------------------IVGGANFTGDD-----------N-NDYQDGNG 41 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc---------------------------ccCcccccCCC-----------C-CCCCCCCC
Confidence 799999999999999999753 11122222210 0 23557889
Q ss_pred CchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCcEEEEccCCCCCC
Q 037455 219 HGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPETT 298 (755)
Q Consensus 219 HGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~ 298 (755)
|||||||||++..... .+.|+||+|+|+.+|+++..+. ....+++++++++++.|++|||||||...
T Consensus 42 HGT~vA~ii~~~~~~~---------~~~giap~a~i~~~~~~~~~~~--~~~~~l~~ai~~a~~~~~~Vin~S~g~~~-- 108 (229)
T cd07477 42 HGTHVAGIIAALDNGV---------GVVGVAPEADLYAVKVLNDDGS--GTYSDIIAGIEWAIENGMDIINMSLGGPS-- 108 (229)
T ss_pred CHHHHHHHHhcccCCC---------ccEeeCCCCEEEEEEEECCCCC--cCHHHHHHHHHHHHHCCCCEEEECCccCC--
Confidence 9999999999975332 2489999999999999988765 67789999999999999999999999853
Q ss_pred CCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCcc--ccCCCceEEeccccccceeeEEEEeCCceEEEeeeeccCCCCCC
Q 037455 299 FDENPIAIGAFAALKRGIFVACSAGNSGPRPYSI--RNGAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSVYPENLFV 376 (755)
Q Consensus 299 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~ 376 (755)
....+..++..+.++|+++|+||||++...... ++..+++|+||+.+.
T Consensus 109 -~~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~----------------------------- 158 (229)
T cd07477 109 -DSPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDS----------------------------- 158 (229)
T ss_pred -CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecC-----------------------------
Confidence 234567777788999999999999999776654 788899999997431
Q ss_pred ceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCCCCCccccEEE
Q 037455 377 SREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSPEVFNMPFVA 456 (755)
Q Consensus 377 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~~~~~~p~~~ 456 (755)
T Consensus 159 -------------------------------------------------------------------------------- 158 (229)
T cd07477 159 -------------------------------------------------------------------------------- 158 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEeeecCCCCCCCCCC
Q 037455 457 VNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRD 536 (755)
Q Consensus 457 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa~~~~~~~~~~~~ 536 (755)
.+.++.||++|+.. |+.|||++|+++++..
T Consensus 159 ----------------------------------~~~~~~~s~~g~~~--------~~~apg~~i~~~~~~~-------- 188 (229)
T cd07477 159 ----------------------------------NNNRASFSSTGPEV--------ELAAPGVDILSTYPNN-------- 188 (229)
T ss_pred ----------------------------------CCCcCCccCCCCCc--------eEEeCCCCeEEecCCC--------
Confidence 12456899999865 9999999999998764
Q ss_pred CCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHcc
Q 037455 537 DYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTT 582 (755)
Q Consensus 537 ~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~T 582 (755)
.|..++|||||||+|||++|||+|++|++++.+||++|++|
T Consensus 189 -----~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 189 -----DYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred -----CEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 78999999999999999999999999999999999999976
No 31
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=2.6e-40 Score=352.60 Aligned_cols=151 Identities=26% Similarity=0.304 Sum_probs=107.1
Q ss_pred ccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCCCCCCCCCCC
Q 037455 139 DIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRDFFG 218 (755)
Q Consensus 139 Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 218 (755)
.|+|||||||||++||+|.+.-.. ..+.+...............+.....|..|
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 54 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISS--------------------------YSKNLVPKGGYDGKEAGETGDINDIVDKLG 54 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhcccc--------------------------cccccccCCCcCCccccccCCCCcCCCCCC
Confidence 389999999999999999853110 000010000000000011111234567899
Q ss_pred CchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCcEEEEccCCCCCC
Q 037455 219 HGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPETT 298 (755)
Q Consensus 219 HGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~ 298 (755)
|||||||+|+|+... .||||+|+|+.+|+++..+. ....+++++|++|++++++|||||||.....
T Consensus 55 HGT~vAgiia~~~~~------------~GvAp~a~i~~~~v~~~~~~--~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~ 120 (294)
T cd07482 55 HGTAVAGQIAANGNI------------KGVAPGIGIVSYRVFGSCGS--AESSWIIKAIIDAADDGVDVINLSLGGYLII 120 (294)
T ss_pred cHhHHHHHHhcCCCC------------ceeCCCCEEEEEEeecCCCC--cCHHHHHHHHHHHHHCCCCEEEeCCccCCCC
Confidence 999999999986421 59999999999999988773 4788999999999999999999999985422
Q ss_pred CC--------CCHHHHHHHHHHhCCcEEEEecCCCCCCC
Q 037455 299 FD--------ENPIAIGAFAALKRGIFVACSAGNSGPRP 329 (755)
Q Consensus 299 ~~--------~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~ 329 (755)
.. .+.+..++..+.++|++||+||||+|...
T Consensus 121 ~~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~ 159 (294)
T cd07482 121 GGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDV 159 (294)
T ss_pred CcccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCccc
Confidence 11 13456667778889999999999998653
No 32
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=2.3e-41 Score=358.55 Aligned_cols=274 Identities=32% Similarity=0.456 Sum_probs=208.1
Q ss_pred EEEEEcccccCCCCCCc-CCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCCCCCCCCCCCC
Q 037455 141 IVGILDTGIWPESKSYD-DRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRDFFGH 219 (755)
Q Consensus 141 ~VgVIDtGid~~Hp~f~-~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~gH 219 (755)
+|||||||||++||+|. ++ + ...++.+.+.|.++. .......|..+|
T Consensus 1 ~V~viDtGid~~h~~~~~~~------------------~----~~~~~~~~~~~~~~~----------~~~~~~~~~~~H 48 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN------------------F----IWSKVPGGYNFVDGN----------PNPSPSDDDNGH 48 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT------------------E----EEEEEEEEEETTTTB----------STTTSSSTSSSH
T ss_pred CEEEEcCCcCCCChhHccCC------------------c----ccccccceeeccCCC----------CCcCccccCCCc
Confidence 69999999999999997 32 0 112344455555442 112235678899
Q ss_pred chhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHH-hCCCcEEEEccCCCC--
Q 037455 220 GTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAI-ADGVDIMSLSLAFPE-- 296 (755)
Q Consensus 220 GThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~-~~g~dVIn~SlG~~~-- 296 (755)
||||||||+|.. . .+. ....|+||+|+|+.+|++...+ ....+++.+|++++ +.+++|||||||...
T Consensus 49 GT~va~ii~~~~-~-~~~-----~~~~Gva~~a~l~~~~i~~~~~---~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~ 118 (282)
T PF00082_consen 49 GTHVAGIIAGNG-G-NNG-----PGINGVAPNAKLYSYKIFDNSG---GTSSDLIEAIEYAVKNDGVDVINLSFGSNSGP 118 (282)
T ss_dssp HHHHHHHHHHTT-S-SSS-----SSETCSSTTSEEEEEECSSTTS---EEHHHHHHHHHHHHHHTTSSEEEECEEBEESS
T ss_pred cchhhhhccccc-c-ccc-----cccccccccccccccccccccc---cccccccchhhhhhhccCCccccccccccccc
Confidence 999999999986 2 111 2238999999999999987766 67888999999999 899999999998832
Q ss_pred -CCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCC---ccccCCCceEEeccccccceeeEEEEeCCceEEEeeeeccCC
Q 037455 297 -TTFDENPIAIGAFAALKRGIFVACSAGNSGPRPY---SIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSVYPE 372 (755)
Q Consensus 297 -~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g~~~~~~ 372 (755)
.....+.+..+.+.+.++|+++|+||||+|.... ..+...+++|+||+..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~-------------------------- 172 (282)
T PF00082_consen 119 PDPSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVD-------------------------- 172 (282)
T ss_dssp SHSHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEE--------------------------
T ss_pred cccccccccccccccccccCcceeeccccccccccccccccccccccccccccc--------------------------
Confidence 1122234556666888999999999999987654 3556668889998732
Q ss_pred CCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCCCCCccc
Q 037455 373 NLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSPEVFNM 452 (755)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~~~~~~ 452 (755)
T Consensus 173 -------------------------------------------------------------------------------- 172 (282)
T PF00082_consen 173 -------------------------------------------------------------------------------- 172 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEeeecCCCCCC
Q 037455 453 PFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQ 532 (755)
Q Consensus 453 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa~~~~~~~~ 532 (755)
..+.++.||++|+... .+++||||+|||.+|.++++....
T Consensus 173 -------------------------------------~~~~~~~~s~~g~~~~-~~~~~~di~a~G~~i~~~~~~~~~-- 212 (282)
T PF00082_consen 173 -------------------------------------NNGQPASYSNYGGPSD-DGRIKPDIAAPGGNILSAVPGSDR-- 212 (282)
T ss_dssp -------------------------------------TTSSBSTTSSBSTTET-TCTTCEEEEEECSSEEEEETTTES--
T ss_pred -------------------------------------cccccccccccccccc-cccccccccccccccccccccccc--
Confidence 1125578999976653 379999999999999998876521
Q ss_pred CCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHccccccccCCcccccCCCCCCCCCCccccccc
Q 037455 533 PIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLDFGAGHI 612 (755)
Q Consensus 533 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~i 612 (755)
..|..++|||||||+|||++||++|++|++++.+||++|++||+++...+ .......||||+|
T Consensus 213 --------~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~---------~~~~~~~~G~G~i 275 (282)
T PF00082_consen 213 --------GSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTN---------GEGYDNSYGWGLI 275 (282)
T ss_dssp --------EEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT---------SSSSHHHHTTSBE
T ss_pred --------ccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC---------CCCCCCCccCChh
Confidence 25889999999999999999999999999999999999999999886221 2334558899999
Q ss_pred CcCccCC
Q 037455 613 NPNKAMD 619 (755)
Q Consensus 613 n~~~Av~ 619 (755)
|+.+|++
T Consensus 276 n~~~a~~ 282 (282)
T PF00082_consen 276 NAEKALN 282 (282)
T ss_dssp -HHHHHH
T ss_pred CHHHHhC
Confidence 9999874
No 33
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.6e-40 Score=340.61 Aligned_cols=158 Identities=23% Similarity=0.275 Sum_probs=119.4
Q ss_pred CCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCCCCCCCCC
Q 037455 137 GSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRDF 216 (755)
Q Consensus 137 G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~d~ 216 (755)
+++|+|||||||||++||+|.++ +...++|....... ........|.
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~---------------------------i~~~~~~~~~~~~~------~~~~~~~~d~ 48 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK---------------------------IIGGKSFSPYEGDG------NKVSPYYVSA 48 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc---------------------------cccCCCCCCCCCCc------ccCCCCCCCC
Confidence 78999999999999999999753 12222232221000 0001123468
Q ss_pred CCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCC----CCChhHHHHHHHHHHhCCCcEEEEcc
Q 037455 217 FGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNL----AAAETDVLAGMDQAIADGVDIMSLSL 292 (755)
Q Consensus 217 ~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~----~~~~~~i~~ai~~a~~~g~dVIn~Sl 292 (755)
.||||||||||+ |+||+|+|+.+||++..+.. .++...+++||+||+++|+|||||||
T Consensus 49 ~gHGT~vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~ 110 (247)
T cd07491 49 DGHGTAMARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSW 110 (247)
T ss_pred CCcHHHHHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeee
Confidence 899999999994 79999999999999865521 25677899999999999999999999
Q ss_pred CCCCCCC---CCCHHHHHHHHHHhCCcEEEEecCCCCCCCC---ccccCCCceEEeccc
Q 037455 293 AFPETTF---DENPIAIGAFAALKRGIFVACSAGNSGPRPY---SIRNGAPWITAVGAG 345 (755)
Q Consensus 293 G~~~~~~---~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVga~ 345 (755)
|...... ....+..++.+|.++|+++|+||||+|.... ..+...+++|+|||.
T Consensus 111 g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~ 169 (247)
T cd07491 111 TIKKPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAA 169 (247)
T ss_pred ecccccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEee
Confidence 9864311 2467888888999999999999999997754 234667899999984
No 34
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.9e-39 Score=329.89 Aligned_cols=222 Identities=22% Similarity=0.210 Sum_probs=173.4
Q ss_pred ccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCCCCCCCCCCC
Q 037455 139 DIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRDFFG 218 (755)
Q Consensus 139 Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 218 (755)
||+|||||||||++||+|.+.-. ..+.+..+. .........|..|
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~---------------------------~~~~~~~~~--------~~~~~~~~~d~~g 45 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLAL---------------------------DGEVTIDLE--------IIVVSAEGGDKDG 45 (222)
T ss_pred CCEEEEEeCCCCCCChhhhcccc---------------------------ccccccccc--------cccCCCCCCCCCC
Confidence 79999999999999999985411 001110000 0011123557889
Q ss_pred CchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCcEEEEccCCCCCC
Q 037455 219 HGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPETT 298 (755)
Q Consensus 219 HGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~ 298 (755)
|||||||||++ .+|+++|+.+|+++..+. +..+++++||+|++++|++|||||||.....
T Consensus 46 HGT~vAgiia~------------------~~p~~~i~~~~v~~~~~~--~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~~ 105 (222)
T cd07492 46 HGTACAGIIKK------------------YAPEAEIGSIKILGEDGR--CNSFVLEKALRACVENDIRIVNLSLGGPGDR 105 (222)
T ss_pred cHHHHHHHHHc------------------cCCCCeEEEEEEeCCCCC--cCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC
Confidence 99999999974 459999999999987765 7888999999999999999999999986432
Q ss_pred CCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeEEEEeCCceEEEeeeeccCCCCCCce
Q 037455 299 FDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSVYPENLFVSR 378 (755)
Q Consensus 299 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~ 378 (755)
....+..++.++.++|+++|+||||++.... .+...+++|+|++...+.
T Consensus 106 -~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~----------------------------- 154 (222)
T cd07492 106 -DFPLLKELLEYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSDTADD----------------------------- 154 (222)
T ss_pred -cCHHHHHHHHHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEecCCCC-----------------------------
Confidence 2346777888888999999999999986543 367778899998732110
Q ss_pred eeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCCCCCccccEEEEe
Q 037455 379 EPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSPEVFNMPFVAVN 458 (755)
Q Consensus 379 ~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~~~~~~p~~~i~ 458 (755)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEeeecCCCCCCCCCCCC
Q 037455 459 LKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQPIRDDY 538 (755)
Q Consensus 459 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa~~~~~~~~~~~~~~ 538 (755)
. .+.+++ ++|+.|||.+|+++.+..
T Consensus 155 ----------------------------------~---~~~~~~--------~~~~~apg~~i~~~~~~~---------- 179 (222)
T cd07492 155 ----------------------------------P---KSFWYI--------YVEFSADGVDIIAPAPHG---------- 179 (222)
T ss_pred ----------------------------------C---cccccC--------CceEEeCCCCeEeecCCC----------
Confidence 0 011122 449999999999988764
Q ss_pred cccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 037455 539 LLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTAD 584 (755)
Q Consensus 539 ~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~ 584 (755)
.|..++|||||||+|||++|||+|++|+|+++|||++|++||+
T Consensus 180 ---~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 180 ---RYLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred ---CEEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 8999999999999999999999999999999999999999985
No 35
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=1.4e-39 Score=347.37 Aligned_cols=248 Identities=21% Similarity=0.215 Sum_probs=180.0
Q ss_pred cCCCCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCC
Q 037455 127 HAGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNIST 206 (755)
Q Consensus 127 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~ 206 (755)
+..+|+.+++|+||+|+|||||||++||+|.++... ...++|.....
T Consensus 28 ~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~-------------------------~~~~~~~~~~~-------- 74 (297)
T cd04059 28 VTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP-------------------------EASYDFNDNDP-------- 74 (297)
T ss_pred cHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc-------------------------cccccccCCCC--------
Confidence 456899999999999999999999999999754110 01122222110
Q ss_pred CCCCCCC--CCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCC
Q 037455 207 TDDYDSP--RDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADG 284 (755)
Q Consensus 207 ~~~~~~~--~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g 284 (755)
...+ .|..+|||||||||+|+..+.. ...||||+|+|+.+|++.... ....+..++.++.+ .
T Consensus 75 ---~~~~~~~~~~gHGT~vAgiiag~~~~~~--------~~~GvAp~a~l~~~~~~~~~~----~~~~~~~~~~~~~~-~ 138 (297)
T cd04059 75 ---DPTPRYDDDNSHGTRCAGEIAAVGNNGI--------CGVGVAPGAKLGGIRMLDGDV----TDVVEAESLGLNPD-Y 138 (297)
T ss_pred ---CCCCccccccccCcceeeEEEeecCCCc--------ccccccccceEeEEEecCCcc----ccHHHHHHHhcccC-C
Confidence 0112 2778999999999999853321 138999999999999987643 33445566665554 4
Q ss_pred CcEEEEccCCCCCCC----CCCHHHHHHHHHHh-----CCcEEEEecCCCCCCCCc----cccCCCceEEecccccccee
Q 037455 285 VDIMSLSLAFPETTF----DENPIAIGAFAALK-----RGIFVACSAGNSGPRPYS----IRNGAPWITAVGAGTVDREF 351 (755)
Q Consensus 285 ~dVIn~SlG~~~~~~----~~~~~~~a~~~a~~-----~Gi~vV~AAGN~g~~~~~----~~~~~p~vitVga~~~~~~~ 351 (755)
++|||||||...... .......++.++.+ +|+++|+||||+|..... .....+++|+|||.+.
T Consensus 139 ~~Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~---- 214 (297)
T cd04059 139 IDIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTA---- 214 (297)
T ss_pred ceEEECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCC----
Confidence 699999999865221 12234444555543 699999999999973221 2235678888887321
Q ss_pred eEEEEeCCceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcC
Q 037455 352 AAHVTLGNEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSG 431 (755)
Q Consensus 352 ~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~g 431 (755)
T Consensus 215 -------------------------------------------------------------------------------- 214 (297)
T cd04059 215 -------------------------------------------------------------------------------- 214 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEecCCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCccc
Q 037455 432 AAGAIFSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILK 511 (755)
Q Consensus 432 a~g~i~~n~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lK 511 (755)
.+.++.||++|+..
T Consensus 215 -----------------------------------------------------------~g~~~~~s~~g~~~------- 228 (297)
T cd04059 215 -----------------------------------------------------------NGVRASYSEVGSSV------- 228 (297)
T ss_pred -----------------------------------------------------------CCCCcCCCCCCCcE-------
Confidence 23567899999987
Q ss_pred CeeEeCCCc-------EEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 037455 512 PDILAPGVD-------ILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTAD 584 (755)
Q Consensus 512 PDI~APG~~-------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~ 584 (755)
+++|||.. |+++..... ...|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 229 -~~~a~g~~~~~~~~~i~~~~~~~~----------~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 229 -LASAPSGGSGNPEASIVTTDLGGN----------CNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred -EEEecCCCCCCCCCceEeCCCCCC----------CCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 89999987 766655420 126788999999999999999999999999999999999999985
No 36
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=3.5e-38 Score=331.17 Aligned_cols=243 Identities=26% Similarity=0.286 Sum_probs=185.5
Q ss_pred CCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCCCCCCCC
Q 037455 136 FGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRD 215 (755)
Q Consensus 136 ~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~d 215 (755)
+|+||+|+|||+||+.+||+|.+..... ..+.... ........|
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~---------------------------~~~~~~~---------~~~~~~~~~ 44 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEA---------------------------SYYVAVN---------DAGYASNGD 44 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCccccc---------------------------ccccccc---------cccCCCCCC
Confidence 5999999999999999999998642110 0000000 000123456
Q ss_pred CCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCC-CCCCChhHHHHHHHHHHhCCCcEEEEccCC
Q 037455 216 FFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSND-NLAAAETDVLAGMDQAIADGVDIMSLSLAF 294 (755)
Q Consensus 216 ~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~ 294 (755)
..+|||||||||+|+..+ ..+.|+||+|+|+.+|+++..+ . .....+.++++++++.+++|||||||.
T Consensus 45 ~~~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~Vin~S~g~ 113 (267)
T cd04848 45 GDSHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAGST--FSDADIAAAYDFLAASGVRIINNSWGG 113 (267)
T ss_pred CCChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCcc--cchHHHHHHHHHHHhCCCeEEEccCCC
Confidence 789999999999998543 2248999999999999998764 3 667788899999999999999999998
Q ss_pred CCCCC------------CCCHHHHHHHHHHhCCcEEEEecCCCCCCCCcc---------ccCCCceEEeccccccceeeE
Q 037455 295 PETTF------------DENPIAIGAFAALKRGIFVACSAGNSGPRPYSI---------RNGAPWITAVGAGTVDREFAA 353 (755)
Q Consensus 295 ~~~~~------------~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~---------~~~~p~vitVga~~~~~~~~~ 353 (755)
..... ..+.+...+..+.++|+++|+||||++...... +...+++|+||+.+.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~----- 188 (267)
T cd04848 114 NPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPN----- 188 (267)
T ss_pred CCcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCC-----
Confidence 76221 345667777788899999999999998654332 2345678888874321
Q ss_pred EEEeCCceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCce
Q 037455 354 HVTLGNEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAA 433 (755)
Q Consensus 354 ~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~ 433 (755)
T Consensus 189 -------------------------------------------------------------------------------- 188 (267)
T cd04848 189 -------------------------------------------------------------------------------- 188 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCcccc--ccCCCCCCCCCCccc
Q 037455 434 GAIFSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVAN--FSSRGPSLRSPWILK 511 (755)
Q Consensus 434 g~i~~n~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--fSs~Gp~~~~~g~lK 511 (755)
+.... ||++|+... .
T Consensus 189 ----------------------------------------------------------~~~~~~~~s~~~~~~~-----~ 205 (267)
T cd04848 189 ----------------------------------------------------------GTIASYSYSNRCGVAA-----N 205 (267)
T ss_pred ----------------------------------------------------------CCcccccccccchhhh-----h
Confidence 12223 488886543 3
Q ss_pred CeeEeCCCcEEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 037455 512 PDILAPGVDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTTAD 584 (755)
Q Consensus 512 PDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~ 584 (755)
++++|||.+|+++.+... ..|..++|||||||+|||++||++|++|++++++||++|++||+
T Consensus 206 ~~~~apG~~i~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 206 WCLAAPGENIYSTDPDGG-----------NGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred heeecCcCceeecccCCC-----------CcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 479999999999887421 27889999999999999999999999999999999999999985
No 37
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-37 Score=324.83 Aligned_cols=354 Identities=21% Similarity=0.311 Sum_probs=259.3
Q ss_pred CCeEEEEECCCCCCCCccchHHHHHHHhhccCCCCCCCCCCCceE------EEeccceeEEEEEeC-----HHHHHHhhc
Q 037455 30 RKTYIIHMDKAAMPAPFSHHHHWYMSVLSSLSSSDDGDGDAPTHL------YTYNHVMDGFSAVLS-----KNQLEQLQK 98 (755)
Q Consensus 30 ~~~yIV~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~------~~y~~~~ng~s~~l~-----~~~~~~L~~ 98 (755)
+..|||.|+.... .+.++..+++.|+...-. ..+++ -+|..-|.-+-++-. .-+|++|..
T Consensus 49 e~EyIv~F~~y~~---Ak~r~syi~skl~gS~Vt------nWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~ 119 (1033)
T KOG4266|consen 49 ESEYIVRFKQYKP---AKDRRSYIESKLRGSGVT------NWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEM 119 (1033)
T ss_pred cceeEEEeccccc---chHHHHHHHHHhhcCCCC------ceeEeeccCccccCCCccceEEEeccCccchhheeeehhc
Confidence 5679999997542 234556666666533311 22332 344444544444433 235889999
Q ss_pred CCCeEEEEeceeeccccc---------------------cC---------Cccccc------------cccCCCCcCCCC
Q 037455 99 MPGHHATYLESFGHLHTT---------------------RT---------PQFLGL------------KKHAGVWPAAGF 136 (755)
Q Consensus 99 ~~~V~~v~~~~~~~~~~~---------------------~~---------~~~~g~------------~~~~~~~~~~~~ 136 (755)
+|+|+.|.|.+.+.+-.. .+ +..++- -+++-+|.+|++
T Consensus 120 hp~vk~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~GyT 199 (1033)
T KOG4266|consen 120 HPDVKVVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGYT 199 (1033)
T ss_pred CCCceeecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhcccc
Confidence 999999999887654100 00 000110 013458999999
Q ss_pred CCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCCCCCCCCCCCC
Q 037455 137 GSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNISTTDDYDSPRDF 216 (755)
Q Consensus 137 G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~d~ 216 (755)
|++|+|||.|||+.-+||-|+.- .-...+++. ..-.|.
T Consensus 200 Ga~VkvAiFDTGl~~~HPHFrnv----------------------------KERTNWTNE--------------~tLdD~ 237 (1033)
T KOG4266|consen 200 GAKVKVAIFDTGLRADHPHFRNV----------------------------KERTNWTNE--------------DTLDDN 237 (1033)
T ss_pred CCceEEEEeecccccCCccccch----------------------------hhhcCCcCc--------------cccccC
Confidence 99999999999999999999731 000011111 123467
Q ss_pred CCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCcEEEEccCCCC
Q 037455 217 FGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPE 296 (755)
Q Consensus 217 ~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~ 296 (755)
-||||.|||+|||... ..|.||+++|+++|||-+..- .+.+++++|+.||+...+||+|+|+|++
T Consensus 238 lgHGTFVAGvia~~~e------------c~gfa~d~e~~~frvft~~qV--SYTSWFLDAFNYAI~~kidvLNLSIGGP- 302 (1033)
T KOG4266|consen 238 LGHGTFVAGVIAGRNE------------CLGFASDTEIYAFRVFTDAQV--SYTSWFLDAFNYAIATKIDVLNLSIGGP- 302 (1033)
T ss_pred cccceeEeeeeccchh------------hcccCCccceeEEEeecccee--ehhhHHHHHHHHHHhhhcceEeeccCCc-
Confidence 8999999999999853 279999999999999987765 7889999999999999999999999997
Q ss_pred CCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCC--CceEEeccccccceeeEEEEeCCceEEEeeeeccCCCC
Q 037455 297 TTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRNGA--PWITAVGAGTVDREFAAHVTLGNEELTVIGKSVYPENL 374 (755)
Q Consensus 297 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~--p~vitVga~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~ 374 (755)
++.+.|+-.-+..+..++|++|.|+||+|+-.++..+.+ ..+|.||-
T Consensus 303 -DfmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGG------------------------------ 351 (1033)
T KOG4266|consen 303 -DFMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGG------------------------------ 351 (1033)
T ss_pred -ccccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeecc------------------------------
Confidence 466677776677888899999999999999888776543 33444442
Q ss_pred CCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCCCCCccccE
Q 037455 375 FVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSPEVFNMPF 454 (755)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~~~~~~p~ 454 (755)
T Consensus 352 -------------------------------------------------------------------------------- 351 (1033)
T KOG4266|consen 352 -------------------------------------------------------------------------------- 351 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCC----CCCcccCeeEeCCCcEEeeecCCCC
Q 037455 455 VAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLR----SPWILKPDILAPGVDILAAWVPNNP 530 (755)
Q Consensus 455 ~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~----~~g~lKPDI~APG~~I~sa~~~~~~ 530 (755)
....+.++.|||||-+.. ..||+||||++-|.+|.......
T Consensus 352 ---------------------------------IdfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~~-- 396 (1033)
T KOG4266|consen 352 ---------------------------------IDFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVST-- 396 (1033)
T ss_pred ---------------------------------ccccchhhhhccCCcceeecCCcccccCCceEeeccccccCcccc--
Confidence 123468899999996532 24899999999999997654443
Q ss_pred CCCCCCCCcccceeeeccccchhhHHHHHHHHHHh----hCCCCCHHHHHHHHHccccccccCCcccccCCCCCCCCCCc
Q 037455 531 WQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKA----THRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLD 606 (755)
Q Consensus 531 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~ 606 (755)
+...+||||.|+|.|||+++||.+ +.--+.|+.+|++|+..|.+++.. .-+.
T Consensus 397 -----------GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~-------------NMfE 452 (1033)
T KOG4266|consen 397 -----------GCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGP-------------NMFE 452 (1033)
T ss_pred -----------cchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCC-------------chhh
Confidence 788999999999999999999866 334568999999999999998632 3369
Q ss_pred ccccccCcCccCC
Q 037455 607 FGAGHINPNKAMD 619 (755)
Q Consensus 607 ~G~G~in~~~Av~ 619 (755)
||+|++|+.++.+
T Consensus 453 QGaGkldLL~syq 465 (1033)
T KOG4266|consen 453 QGAGKLDLLESYQ 465 (1033)
T ss_pred ccCcchhHHHHHH
Confidence 9999999988865
No 38
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-33 Score=310.71 Aligned_cols=344 Identities=24% Similarity=0.258 Sum_probs=228.9
Q ss_pred CCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCCcEEEEccCCCC
Q 037455 217 FGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGVDIMSLSLAFPE 296 (755)
Q Consensus 217 ~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~ 296 (755)
.-|||||||||+|+...... ..||||+|+|+++++.+..-....+...+.+|+..++++.+||||||+|-..
T Consensus 310 g~HGTHVAgIa~anhpe~p~--------~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~a 381 (1304)
T KOG1114|consen 310 GPHGTHVAGIAAANHPETPE--------LNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGEDA 381 (1304)
T ss_pred CCCcceehhhhccCCCCCcc--------ccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCccC
Confidence 46999999999999765422 3799999999999997654322245667889999999999999999999876
Q ss_pred -CCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCcccc---CCCceEEeccccccceeeEEEEeCCceEEEeeeeccCC
Q 037455 297 -TTFDENPIAIGAFAALKRGIFVACSAGNSGPRPYSIRN---GAPWITAVGAGTVDREFAAHVTLGNEELTVIGKSVYPE 372 (755)
Q Consensus 297 -~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~---~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g~~~~~~ 372 (755)
-+.....++..-+.+.++|+++|+||||.|+...+++. ...++|.|||--.....
T Consensus 382 ~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm--------------------- 440 (1304)
T KOG1114|consen 382 HLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMM--------------------- 440 (1304)
T ss_pred CCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHH---------------------
Confidence 44555666666656668899999999999998876653 34578888872111000
Q ss_pred CCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCCCCCccc
Q 037455 373 NLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSPEVFNM 452 (755)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~~~~~~ 452 (755)
...|.++
T Consensus 441 ---~a~y~~~---------------------------------------------------------------------- 447 (1304)
T KOG1114|consen 441 ---QAEYSVR---------------------------------------------------------------------- 447 (1304)
T ss_pred ---Hhhhhhh----------------------------------------------------------------------
Confidence 0000000
Q ss_pred cEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCCCcEEeeecCCCCCC
Q 037455 453 PFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPGVDILAAWVPNNPWQ 532 (755)
Q Consensus 453 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG~~I~sa~~~~~~~~ 532 (755)
.+-...+..+|||||+.| |.+--.|+|||+-|-+- |...
T Consensus 448 -----------------------------------e~vp~~~YtWsSRgP~~D--G~lGVsi~APggAiAsV-P~~t--- 486 (1304)
T KOG1114|consen 448 -----------------------------------EPVPSNPYTWSSRGPCLD--GDLGVSISAPGGAIASV-PQYT--- 486 (1304)
T ss_pred -----------------------------------ccCCCCccccccCCCCcC--CCcceEEecCCccccCC-chhh---
Confidence 011234678999999997 88899999999988653 2211
Q ss_pred CCCCCCcccceeeeccccchhhHHHHHHHHHHhh----CCCCCHHHHHHHHHccccccccCCcccccCCCCCCCCCCccc
Q 037455 533 PIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKAT----HRDWSSAAIRSALMTTADVLDNAYGMITDKSTGVAGTPLDFG 608 (755)
Q Consensus 533 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G 608 (755)
-..-..|+|||||+|+++|.+|||++. +-.+||..||.+|++||.++.+. .++.||
T Consensus 487 -------lq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i-------------d~faqG 546 (1304)
T KOG1114|consen 487 -------LQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI-------------DSFAQG 546 (1304)
T ss_pred -------hhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc-------------chhccC
Confidence 125679999999999999999998654 67899999999999999998532 468999
Q ss_pred ccccCcCccCCCCeEEEccccccccCCCCCCCCCcceeeeecCCCCceEEEE-EE-EEecCCCCceEEEEEEcC--CC--
Q 037455 609 AGHINPNKAMDPGLVVLTGTSDFTCQYANLDLNYPSFIIILNNTNTASFTFK-RV-LTNVADTKSAYTAAVKAP--AG-- 682 (755)
Q Consensus 609 ~G~in~~~Av~~~lv~~~~~~~~~~~~~~~~ln~~s~~~~~~~~~~~~~~~~-~t-v~N~~~~~~ty~~~~~~~--~g-- 682 (755)
.|+|++++|.+ |+++.. . ..+.-|.+ |.+...+.+ ++-+. |. +.+ ..+..|++.+++. .|
T Consensus 547 ~GmlqVdkAyE----yL~q~~-~---~f~~~l~f--~~v~VgN~~--srGIyLRep~~~--~~p~e~~i~VePiF~~~~e 612 (1304)
T KOG1114|consen 547 QGMLQVDKAYE----YLAQSD-F---SFPNALGF--INVNVGNSC--SRGIYLREPTQV--CSPSEHTIGVEPIFENGEE 612 (1304)
T ss_pred cceeehhHHHH----HHHHhh-h---cCCcccee--EEEeecccc--ccceEecCCccc--CCccccceeccccccCccc
Confidence 99999999987 433310 0 00111111 122222111 00000 00 001 1123333333220 11
Q ss_pred ------------------cEEEEEeCeEEEecCCcEEEEEEEEEecCCcccCCCCCCeeEEEEEEEEee---CCceEEEe
Q 037455 683 ------------------MKVKVQPATLSFAGKYSKAEFSLTVNINLGSAVSPKSNFLGNFGYLTWYDV---NGKHLVRS 741 (755)
Q Consensus 683 ------------------~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~~~~~~~G~~~~~~~---~~~~~v~~ 741 (755)
-.|. -|+.+.+ .++.+.|.|+|++.. ...+ ..+++|.=.+. +..+..|+
T Consensus 613 ~~keki~Fe~~L~L~st~pwVq-~p~~l~l--~~~~R~i~VrVDpt~-----l~~G--~hy~eV~gyD~~~p~~gplFrI 682 (1304)
T KOG1114|consen 613 NEKEKISFEVQLSLASTQPWVQ-CPEYLML--ANQGRGINVRVDPTG-----LAPG--VHYTEVLGYDTANPSRGPLFRI 682 (1304)
T ss_pred cccccccceeeEeeecCCccee-Cchhhee--ccCCceeEEEECCcC-----CCCC--cceEEEEEeecCCcccCceEEe
Confidence 0121 2555555 578889999999987 3344 67777776554 35788999
Q ss_pred EEEEEE
Q 037455 742 PIVSAF 747 (755)
Q Consensus 742 P~~~~~ 747 (755)
|+-|..
T Consensus 683 PVTVi~ 688 (1304)
T KOG1114|consen 683 PVTVIK 688 (1304)
T ss_pred eeEEEc
Confidence 998765
No 39
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.5e-33 Score=289.28 Aligned_cols=194 Identities=21% Similarity=0.160 Sum_probs=141.5
Q ss_pred CCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHH--HhCCCcEEEE
Q 037455 213 PRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQA--IADGVDIMSL 290 (755)
Q Consensus 213 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a--~~~g~dVIn~ 290 (755)
..|+++|||||||||||. .|++|+++|+..++.. ...+.+..+++|+ .+.+++||||
T Consensus 33 ~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~------~~~~~~~~~i~~~~~~~~gv~VINm 91 (247)
T cd07488 33 NNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGI------KSNNGQWQECLEAQQNGNNVKIINH 91 (247)
T ss_pred CCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCC------CCCCccHHHHHHHHHhcCCceEEEe
Confidence 457899999999999987 4677999998766522 1233456677777 5679999999
Q ss_pred ccCCCCCCC------CCCHHHHHHHHHHhC-CcEEEEecCCCCCCC-----CccccCCCceEEeccccccceeeEEEEeC
Q 037455 291 SLAFPETTF------DENPIAIGAFAALKR-GIFVACSAGNSGPRP-----YSIRNGAPWITAVGAGTVDREFAAHVTLG 358 (755)
Q Consensus 291 SlG~~~~~~------~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~-----~~~~~~~p~vitVga~~~~~~~~~~~~~~ 358 (755)
|||...... ..+.+..+++.+.++ |+++|+||||+|... ...+..++++|+|||.+....
T Consensus 92 S~G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~-------- 163 (247)
T cd07488 92 SYGEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD-------- 163 (247)
T ss_pred CCccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC--------
Confidence 999865321 234567777777666 999999999999753 233456788999998432110
Q ss_pred CceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEe
Q 037455 359 NEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFS 438 (755)
Q Consensus 359 ~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~ 438 (755)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeEeCC
Q 037455 439 ADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDILAPG 518 (755)
Q Consensus 439 n~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~APG 518 (755)
....+.||++|-.....+..||||+|||
T Consensus 164 ----------------------------------------------------~~~~s~~sn~~~~~~~~~~~~~di~APG 191 (247)
T cd07488 164 ----------------------------------------------------RFFASDVSNAGSEINSYGRRKVLIVAPG 191 (247)
T ss_pred ----------------------------------------------------cceecccccccCCCCCCCCceeEEEEee
Confidence 0022456665422222378999999999
Q ss_pred CcEEeeecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCH------HHHHHHHHcc
Q 037455 519 VDILAAWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSS------AAIRSALMTT 582 (755)
Q Consensus 519 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~------~~ik~~L~~T 582 (755)
++|++ +.+ .|..++|||||||||||++|||++++|++.+ .++|.+|+.|
T Consensus 192 ~~i~s--~~~-------------~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~ 246 (247)
T cd07488 192 SNYNL--PDG-------------KDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSS 246 (247)
T ss_pred eeEEC--CCC-------------ceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhcc
Confidence 99998 322 7889999999999999999999999887764 4567777665
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.98 E-value=6.3e-31 Score=270.74 Aligned_cols=196 Identities=36% Similarity=0.494 Sum_probs=158.1
Q ss_pred CCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHH-hCCCcEEEEc
Q 037455 213 PRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAI-ADGVDIMSLS 291 (755)
Q Consensus 213 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~-~~g~dVIn~S 291 (755)
..+..+||||||++|++...+.. ..|+||+++|+.+|+....+. .....+++++++++ ..+++|||||
T Consensus 40 ~~~~~~HGt~va~~i~~~~~~~~---------~~g~a~~a~i~~~~~~~~~~~--~~~~~~~~ai~~~~~~~~~~iin~S 108 (241)
T cd00306 40 PDDGNGHGTHVAGIIAASANNGG---------GVGVAPGAKLIPVKVLDGDGS--GSSSDIAAAIDYAAADQGADVINLS 108 (241)
T ss_pred CCCCCCcHHHHHHHHhcCCCCCC---------CEEeCCCCEEEEEEEecCCCC--cCHHHHHHHHHHHHhccCCCEEEeC
Confidence 45678999999999999853321 279999999999999887654 57788999999999 8999999999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHhC-CcEEEEecCCCCCCCC---ccccCCCceEEeccccccceeeEEEEeCCceEEEeee
Q 037455 292 LAFPETTFDENPIAIGAFAALKR-GIFVACSAGNSGPRPY---SIRNGAPWITAVGAGTVDREFAAHVTLGNEELTVIGK 367 (755)
Q Consensus 292 lG~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~g~ 367 (755)
||..... ....+...+..+.++ |+++|+|+||.+.... ..+...+++|+||+.+...
T Consensus 109 ~g~~~~~-~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~------------------ 169 (241)
T cd00306 109 LGGPGSP-PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG------------------ 169 (241)
T ss_pred CCCCCCC-CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC------------------
Confidence 9986533 345677777788887 9999999999998776 4677889999999843211
Q ss_pred eccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCCC
Q 037455 368 SVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSP 447 (755)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~ 447 (755)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccc-cccCCCCCCCCCCcccCeeEeCCCcEEeeec
Q 037455 448 EVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVA-NFSSRGPSLRSPWILKPDILAPGVDILAAWV 526 (755)
Q Consensus 448 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a-~fSs~Gp~~~~~g~lKPDI~APG~~I~sa~~ 526 (755)
... .++++| .|||+.|||.++.+...
T Consensus 170 ---------------------------------------------~~~~~~~~~~--------~~~~~~apg~~~~~~~~ 196 (241)
T cd00306 170 ---------------------------------------------TPASPSSNGG--------AGVDIAAPGGDILSSPT 196 (241)
T ss_pred ---------------------------------------------CccCCcCCCC--------CCceEEeCcCCccCccc
Confidence 111 344444 46699999999987511
Q ss_pred CCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHcc
Q 037455 527 PNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSALMTT 582 (755)
Q Consensus 527 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~T 582 (755)
.. ...+..++|||||||+|||++||++|++|++++.++|++|+.|
T Consensus 197 ~~-----------~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 197 TG-----------GGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred CC-----------CCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 11 1389999999999999999999999999999999999999875
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.2e-23 Score=240.54 Aligned_cols=272 Identities=30% Similarity=0.416 Sum_probs=196.4
Q ss_pred CCCCcC--CCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCC
Q 037455 128 AGVWPA--AGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNIS 205 (755)
Q Consensus 128 ~~~~~~--~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~ 205 (755)
...|.. +.+|+||+|+|||+||+..||+|.+.... .++|....
T Consensus 130 ~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~---------------------------~~~~~~~~-------- 174 (508)
T COG1404 130 GALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVA---------------------------GGDFVDGD-------- 174 (508)
T ss_pred ccccccccCCCCCCeEEEEeccCCCCCChhhhccccc---------------------------ccccccCC--------
Confidence 457776 89999999999999999999999864110 01222221
Q ss_pred CCCCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecC-CCCCCChhHHHHHHHHHHhCC
Q 037455 206 TTDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSN-DNLAAAETDVLAGMDQAIADG 284 (755)
Q Consensus 206 ~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-g~~~~~~~~i~~ai~~a~~~g 284 (755)
......|..+|||||+|++++....+ .....|+||+++++.+|++... +. ....+++.+|+++++.+
T Consensus 175 ---~~~~~~d~~~hGt~vag~ia~~~~~~-------~~~~~g~a~~~~~~~~~~~~~~~g~--~~~~~~~~~i~~~~~~~ 242 (508)
T COG1404 175 ---PEPPFLDDNGHGTHVAGTIAAVIFDN-------GAGVAGVAPGAKLLLVKVLGSGGGS--GELSDVAEGIEGAANLG 242 (508)
T ss_pred ---CCCCCCCCCCCcceeeeeeeeecccC-------CCccccccCCCcEEEEEeccCCCCc--ccHHHHHHHHHHHHhcC
Confidence 00024678999999999999842111 1124899999999999999866 54 77888899999999999
Q ss_pred --CcEEEEccCCCCCCCCCCHHHHHHHHHHhCC-cEEEEecCCCCCCCC----ccccCC--CceEEeccccccceeeEEE
Q 037455 285 --VDIMSLSLAFPETTFDENPIAIGAFAALKRG-IFVACSAGNSGPRPY----SIRNGA--PWITAVGAGTVDREFAAHV 355 (755)
Q Consensus 285 --~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~g~~~~----~~~~~~--p~vitVga~~~~~~~~~~~ 355 (755)
+++||||+|..........+..++..++..| +++|+++||.+.... ..+... +.+++|++..
T Consensus 243 ~~~~~in~s~g~~~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~--------- 313 (508)
T COG1404 243 GPADVINLSLGGSLSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALD--------- 313 (508)
T ss_pred CCCcEEEecCCCCccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCC---------
Confidence 9999999998522233445666676777777 999999999987652 122222 2555555421
Q ss_pred EeCCceEEEeeeeccCCCCCCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEE
Q 037455 356 TLGNEELTVIGKSVYPENLFVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGA 435 (755)
Q Consensus 356 ~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~ 435 (755)
T Consensus 314 -------------------------------------------------------------------------------- 313 (508)
T COG1404 314 -------------------------------------------------------------------------------- 313 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCCCcCCCCCccccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCCCCCCCcccCeeE
Q 037455 436 IFSADSRQHLSPEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPSLRSPWILKPDIL 515 (755)
Q Consensus 436 i~~n~~g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~lKPDI~ 515 (755)
..+.++.||++|+.. ..+++
T Consensus 314 ------------------------------------------------------~~~~~~~~s~~g~~~------~~~~~ 333 (508)
T COG1404 314 ------------------------------------------------------LSDTVASFSNDGSPT------GVDIA 333 (508)
T ss_pred ------------------------------------------------------CCCccccccccCCCC------Cccee
Confidence 123667899999752 22999
Q ss_pred eCCCcEEe-----eecCCCCCCCCCCCCcccceeeeccccchhhHHHHHHHHHHhhCC-CCCHHHHHHHHHccccccccC
Q 037455 516 APGVDILA-----AWVPNNPWQPIRDDYLLTDYTLLSGTSMSCPHAAAIAALVKATHR-DWSSAAIRSALMTTADVLDNA 589 (755)
Q Consensus 516 APG~~I~s-----a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p-~ls~~~ik~~L~~TA~~~~~~ 589 (755)
|||.+|.+ +++... ..|..++||||++|||+|++||+++.+| .+++.+++..+..++.. .
T Consensus 334 apg~~i~~~~~~~~~~~~~-----------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~-~-- 399 (508)
T COG1404 334 APGVNILSLSAVNTLPGDG-----------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGL-T-- 399 (508)
T ss_pred CCCccccccccceeeeCCc-----------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhcccc-c--
Confidence 99999988 444431 1499999999999999999999999999 89999999998888873 0
Q ss_pred CcccccCCCCCCCCCCcccccccCcCccC
Q 037455 590 YGMITDKSTGVAGTPLDFGAGHINPNKAM 618 (755)
Q Consensus 590 g~~~~~~~~~~~~~~~~~G~G~in~~~Av 618 (755)
........++.|..+...+.
T Consensus 400 ---------~~~~~~~~~~~~~~~~~~~~ 419 (508)
T COG1404 400 ---------PLSGVDNLVGGGLANLDAAA 419 (508)
T ss_pred ---------cCCccccccccCcccccccc
Confidence 01122346667766655544
No 42
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=9.5e-23 Score=206.18 Aligned_cols=155 Identities=19% Similarity=0.279 Sum_probs=103.5
Q ss_pred cCCCCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCC
Q 037455 127 HAGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNIST 206 (755)
Q Consensus 127 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~ 206 (755)
+..+|.+|++|++|.+||.|.||||-|||+..+ | .--..++|..+ +
T Consensus 150 v~~awa~g~tgknvttaimddgvdymhpdlk~n------------------y-------naeasydfssn---------d 195 (629)
T KOG3526|consen 150 VAEAWALGYTGKNVTTAIMDDGVDYMHPDLKSN------------------Y-------NAEASYDFSSN---------D 195 (629)
T ss_pred HHHHHhhcccCCCceEEeecCCchhcCcchhcc------------------c-------CceeecccccC---------C
Confidence 345899999999999999999999999999632 1 12233444332 2
Q ss_pred CCCCCCCCC--CCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHh-C
Q 037455 207 TDDYDSPRD--FFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIA-D 283 (755)
Q Consensus 207 ~~~~~~~~d--~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~-~ 283 (755)
+.+++...| .+.|||.|||-+++...+ +++| .|||.+.++..+|+++. .+..|++.|-..--+ .
T Consensus 196 pfpyprytddwfnshgtrcagev~aardn--gicg------vgvaydskvagirmldq-----pymtdlieansmghep~ 262 (629)
T KOG3526|consen 196 PFPYPRYTDDWFNSHGTRCAGEVVAARDN--GICG------VGVAYDSKVAGIRMLDQ-----PYMTDLIEANSMGHEPS 262 (629)
T ss_pred CCCCCcccchhhhccCccccceeeeeccC--Ccee------eeeeeccccceeeecCC-----chhhhhhhhcccCCCCc
Confidence 333333334 579999999988776544 3444 59999999999999875 456666655322211 3
Q ss_pred CCcEEEEccCCCCC-CCCCCH---HHHHHHHHHh-----CCcEEEEecCCCCCC
Q 037455 284 GVDIMSLSLAFPET-TFDENP---IAIGAFAALK-----RGIFVACSAGNSGPR 328 (755)
Q Consensus 284 g~dVIn~SlG~~~~-~~~~~~---~~~a~~~a~~-----~Gi~vV~AAGN~g~~ 328 (755)
.++|.+-|||.... ...+-| ..+++-+-+. .|-++|.|.|..|.+
T Consensus 263 kihiysaswgptddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ 316 (629)
T KOG3526|consen 263 KIHIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGED 316 (629)
T ss_pred eEEEEecccCcCCCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCc
Confidence 56899999998762 222222 2333333332 367999999998854
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.72 E-value=4.4e-17 Score=177.71 Aligned_cols=99 Identities=27% Similarity=0.319 Sum_probs=79.0
Q ss_pred eeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhC---CCcEEEEccCCCCCCC---CCCHHHHHHHHHHhCCcEE
Q 037455 245 AIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIAD---GVDIMSLSLAFPETTF---DENPIAIGAFAALKRGIFV 318 (755)
Q Consensus 245 ~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~---g~dVIn~SlG~~~~~~---~~~~~~~a~~~a~~~Gi~v 318 (755)
+.||||+|+|+.|+++++. ..+++.++.+++.+ +++|||||||...... +.+.+..++.++..+||+|
T Consensus 83 ~~gvAP~a~i~~~~~~~~~------~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gitv 156 (361)
T cd04056 83 AGAIAPGANITLYFAPGTV------TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITV 156 (361)
T ss_pred HHhccCCCeEEEEEECCcC------ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEE
Confidence 5899999999999997542 34567788888877 9999999999875322 2245777778888999999
Q ss_pred EEecCCCCCCCC-----------ccccCCCceEEeccccccc
Q 037455 319 ACSAGNSGPRPY-----------SIRNGAPWITAVGAGTVDR 349 (755)
Q Consensus 319 V~AAGN~g~~~~-----------~~~~~~p~vitVga~~~~~ 349 (755)
|+|+||+|.... ..++.+|++++||+++...
T Consensus 157 vaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 157 LAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred EEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 999999997653 3567899999999976543
No 44
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.24 E-value=4.9e-11 Score=112.55 Aligned_cols=115 Identities=23% Similarity=0.297 Sum_probs=90.2
Q ss_pred CCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecC-CCCcCCC--CCcc
Q 037455 375 FVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSAD-SRQHLSP--EVFN 451 (755)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~-~g~~~~~--~~~~ 451 (755)
...+.+++|.+. |...++...+++|||+||.|+.|.+. +|..+++++||.++|++|+ .+..... ....
T Consensus 24 ~~~~~~lv~~g~------g~~~d~~~~dv~GkIvL~~rg~c~~~---~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~ 94 (143)
T cd02133 24 LGKTYELVDAGL------GTPEDFEGKDVKGKIALIQRGEITFV---EKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVF 94 (143)
T ss_pred CCcEEEEEEccC------CchhccCCCCccceEEEEECCCCCHH---HHHHHHHHCCCeEEEEeecCCCcccccCCCCCe
Confidence 456788998654 33344556789999999999999777 9999999999999999998 3322111 1357
Q ss_pred ccEEEEeccchHHHHHHHHhcCCcEEEEeeeeeeeCCcCCCccccccCCCCC
Q 037455 452 MPFVAVNLKDGELVKKYIINVGNATVSIKFQITILGTKPAPQVANFSSRGPS 503 (755)
Q Consensus 452 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~ 503 (755)
+|+++|+..+|+.|++++++ .+++.+..+.. ....+.++.||||||+
T Consensus 95 iP~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~ 141 (143)
T cd02133 95 IPVVFISKEDGEALKAALES----SKKLTFNTKKE-KATNPDLADFSSRGPW 141 (143)
T ss_pred EeEEEecHHHHHHHHHHHhC----CCeEEEEeccc-cccCCccccccCcCCC
Confidence 89999999999999999987 56666666555 4566789999999997
No 45
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.11 E-value=5.9e-10 Score=103.00 Aligned_cols=118 Identities=31% Similarity=0.578 Sum_probs=92.8
Q ss_pred EEeCCceEEEeeeeccCCCCCCceeeEEeccC---CCCCcccCCCCCCCccccceEEEEeecCC-CchhHHHHHHHHHHc
Q 037455 355 VTLGNEELTVIGKSVYPENLFVSREPIYFGYG---NRSKEICEPNSTDSKAVAGKYIFCAFDYN-GNVTVYQQLEEVRKS 430 (755)
Q Consensus 355 ~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~c~~~~~~~~~~~gkivl~~~g~~-~~~~~~~~~~~~~~~ 430 (755)
++++|++. +.|+++++..+ ..+++++... ......|........+++||||||.++.| .+. +|..+++++
T Consensus 2 i~LGng~~-i~G~sl~~~~~--~~~~~~~~~~~~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~---~k~~~~~~~ 75 (126)
T cd02120 2 VTLGNGKT-IVGQSLYPGNL--KTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRV---AKGDAVKAA 75 (126)
T ss_pred EEeCCCCE-EEEEEccCCCC--CccceEeccCcCCCCccccCCCCCCChhhccccEEEEeCCCCccHH---HHHHHHHHc
Confidence 57888877 99999997333 4667765322 23457899888888899999999999998 666 999999999
Q ss_pred CceEEEEecC-CCCc-CCCCCccccEEEEeccchHHHHHHHHhcCCcEEE
Q 037455 431 GAAGAIFSAD-SRQH-LSPEVFNMPFVAVNLKDGELVKKYIINVGNATVS 478 (755)
Q Consensus 431 ga~g~i~~n~-~g~~-~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 478 (755)
||.|+|++++ .+.. .......+|.+.|...+|+.|++|++++..++++
T Consensus 76 GA~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 76 GGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred CCcEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 9999999988 3322 2222467999999999999999999987765543
No 46
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.89 E-value=3.1e-09 Score=90.16 Aligned_cols=81 Identities=35% Similarity=0.571 Sum_probs=57.5
Q ss_pred eEEEEECCCCCCCC-ccchHHHHHHHhhccCCCCCCCCCCCceEEEeccceeEEEEEeCHHHHHHhhcCCCeEEEEecee
Q 037455 32 TYIIHMDKAAMPAP-FSHHHHWYMSVLSSLSSSDDGDGDAPTHLYTYNHVMDGFSAVLSKNQLEQLQKMPGHHATYLESF 110 (755)
Q Consensus 32 ~yIV~l~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~y~~~~ng~s~~l~~~~~~~L~~~~~V~~v~~~~~ 110 (755)
+|||+|++...... ...+.+++.+++.+..... ...+.++.+.|...||||+++++++++++|+++|+|++|+|++.
T Consensus 1 ~YIV~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~ 78 (82)
T PF05922_consen 1 RYIVVFKDDASAASSFSSHKSWQASILKSALKSA--SSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQV 78 (82)
T ss_dssp EEEEEE-TTSTHHCHHHHHHHHHH----HHHHTH---TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECE
T ss_pred CEEEEECCCCCcchhHHHHHHHHHHHHhhhhhhh--cccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCce
Confidence 69999999876544 5566667665444321000 01168999999999999999999999999999999999999998
Q ss_pred eccc
Q 037455 111 GHLH 114 (755)
Q Consensus 111 ~~~~ 114 (755)
++++
T Consensus 79 v~l~ 82 (82)
T PF05922_consen 79 VSLH 82 (82)
T ss_dssp EEE-
T ss_pred EecC
Confidence 8763
No 47
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=98.80 E-value=3.1e-08 Score=89.35 Aligned_cols=86 Identities=20% Similarity=0.314 Sum_probs=60.4
Q ss_pred ceEEEEEEEEecCCCCceEEEEEEc--------CCC----------c-EEEEEeCeEEEecCCcEEEEEEEEEecCCccc
Q 037455 655 ASFTFKRVLTNVADTKSAYTAAVKA--------PAG----------M-KVKVQPATLSFAGKYSKAEFSLTVNINLGSAV 715 (755)
Q Consensus 655 ~~~~~~~tv~N~~~~~~ty~~~~~~--------~~g----------~-~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~ 715 (755)
...+++++|+|.|+.+.+|++++.. ..| . .+...+..|++ ++|++++|+|+|+.+.+-.
T Consensus 8 ~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~~p~~~~- 85 (112)
T PF06280_consen 8 NKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTITPPSGLD- 85 (112)
T ss_dssp SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE--GGGH-
T ss_pred CceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEEehhcCC-
Confidence 4689999999999999999999861 111 1 67778889999 7999999999999976310
Q ss_pred CCCCCCeeEEEEEEEEeeCCceEEEeEEE
Q 037455 716 SPKSNFLGNFGYLTWYDVNGKHLVRSPIV 744 (755)
Q Consensus 716 ~~~~~~~~~~G~~~~~~~~~~~~v~~P~~ 744 (755)
..+.. +++|+|.|+++++.+.+++||+
T Consensus 86 ~~~~~--~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 86 ASNGP--FYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp HTT-E--EEEEEEEEESSTTSEEEEEEEE
T ss_pred cccCC--EEEEEEEEEcCCCCEEEEeeeC
Confidence 12345 9999999965566679999996
No 48
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=98.72 E-value=1.5e-08 Score=89.64 Aligned_cols=90 Identities=21% Similarity=0.352 Sum_probs=71.0
Q ss_pred ceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecC------CCCcCCCCCc
Q 037455 377 SREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSAD------SRQHLSPEVF 450 (755)
Q Consensus 377 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~------~g~~~~~~~~ 450 (755)
...+++..+.......|.+......+++||||||.||.|.+. +|..+++++||.++|++|. ..........
T Consensus 6 ~~~~lV~~~~~~~~~~~~~~~~~~~~~~gkIvlv~rg~~~~~---~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~ 82 (101)
T PF02225_consen 6 VTGPLVPAGNGIDEGDCCPSDYNGSDVKGKIVLVERGSCSFD---DKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPI 82 (101)
T ss_dssp EEEEEEEETTEEECCHHHHHHTSTSTCTTSEEEEESTSSCHH---HHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTST
T ss_pred EEEEEEEecCCCCcccccccccCCccccceEEEEecCCCCHH---HHHHHHHHcCCEEEEEEeCCccccCcccccCCCCc
Confidence 356666444444556677777888999999999999999888 9999999999999999992 2222334568
Q ss_pred cccEEEEeccchHHHHHHH
Q 037455 451 NMPFVAVNLKDGELVKKYI 469 (755)
Q Consensus 451 ~~p~~~i~~~~g~~l~~~~ 469 (755)
.+|+++|+..+|+.|++|+
T Consensus 83 ~iP~v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 83 DIPVVFISYEDGEALLAYI 101 (101)
T ss_dssp BSEEEEE-HHHHHHHHHHH
T ss_pred EEEEEEeCHHHHhhhhccC
Confidence 9999999999999999885
No 49
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.70 E-value=8.3e-08 Score=87.96 Aligned_cols=96 Identities=10% Similarity=0.100 Sum_probs=74.9
Q ss_pred eeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecC-CCCcC----CC--CCc
Q 037455 378 REPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSAD-SRQHL----SP--EVF 450 (755)
Q Consensus 378 ~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~-~g~~~----~~--~~~ 450 (755)
.-++++... ...+.|.+..+...+++|||+|+.|+.|.+. +|..+++++||.++|++|+ .+... .. ...
T Consensus 18 ~~~lv~~~~-~~~~gC~~~~~~~~~~~GkIvLv~rg~c~f~---~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~ 93 (122)
T cd04816 18 TAPLVPLDP-ERPAGCDASDYDGLDVKGAIVLVDRGGCPFA---DKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDL 93 (122)
T ss_pred EEEEEEcCC-CCccCCCccccCCCCcCCeEEEEECCCCCHH---HHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCC
Confidence 345666432 2347899888877899999999999999887 9999999999999999988 32211 11 345
Q ss_pred cccEEEEeccchHHHHHHHHhcCCcEE
Q 037455 451 NMPFVAVNLKDGELVKKYIINVGNATV 477 (755)
Q Consensus 451 ~~p~~~i~~~~g~~l~~~~~~~~~~~~ 477 (755)
.+|+++|+..+|+.|++++..+.+.++
T Consensus 94 ~iP~~~Is~~~G~~l~~~l~~g~~v~~ 120 (122)
T cd04816 94 KVPVGVITKAAGAALRRRLGAGETLEL 120 (122)
T ss_pred eeeEEEEcHHHHHHHHHHHcCCCEEEE
Confidence 699999999999999999987765433
No 50
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=98.69 E-value=1e-07 Score=88.69 Aligned_cols=93 Identities=6% Similarity=0.018 Sum_probs=74.7
Q ss_pred eccCCCCCcccCCCCC--CCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecC-C-CCcCC----CCCccccE
Q 037455 383 FGYGNRSKEICEPNST--DSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSAD-S-RQHLS----PEVFNMPF 454 (755)
Q Consensus 383 ~~~~~~~~~~c~~~~~--~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~-~-g~~~~----~~~~~~p~ 454 (755)
........+.|.+... ++.++.|+|+|++||.|.|. +|..+++++||.++|+||+ + +.... .....+|+
T Consensus 37 ~~~~~~~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~---~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~ 113 (138)
T cd02122 37 VPDPPNDHYGCDPDTRFPIPPNGEPWIALIQRGNCTFE---EKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVA 113 (138)
T ss_pred cCCCCCCcCCCCCCccccCCccCCCeEEEEECCCCCHH---HHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceE
Confidence 3334445678988776 56789999999999999988 9999999999999999999 3 32222 12357899
Q ss_pred EEEeccchHHHHHHHHhcCCcEEE
Q 037455 455 VAVNLKDGELVKKYIINVGNATVS 478 (755)
Q Consensus 455 ~~i~~~~g~~l~~~~~~~~~~~~~ 478 (755)
++|+..+|+.|++++.++.+.+++
T Consensus 114 v~Is~~~G~~l~~~l~~G~~Vtv~ 137 (138)
T cd02122 114 IMITNPKGMEILELLERGISVTMV 137 (138)
T ss_pred EEEcHHHHHHHHHHHHcCCcEEEe
Confidence 999999999999999888765554
No 51
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.67 E-value=9.5e-08 Score=85.92 Aligned_cols=89 Identities=13% Similarity=0.151 Sum_probs=72.2
Q ss_pred ceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCc-C---C--CCCc
Q 037455 377 SREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQH-L---S--PEVF 450 (755)
Q Consensus 377 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~-~---~--~~~~ 450 (755)
..+|++.... ...|.+.++.+.+++|||+|++||+|.|. +|..+++++||.++|++|+.... . . ....
T Consensus 20 ~~~~~~~~~~---~~gC~~~~~~~~~l~gkIaLV~RG~CsF~---~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v 93 (120)
T cd02129 20 TLLPLRNLTS---SVLCSASDVPPGGLKGKAVVVMRGNCTFY---EKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKI 93 (120)
T ss_pred cceeeecCCC---cCCCCccccCccccCCeEEEEECCCcCHH---HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCC
Confidence 3566666443 46799888888899999999999999888 99999999999999999994321 1 1 1346
Q ss_pred cccEEEEeccchHHHHHHHHh
Q 037455 451 NMPFVAVNLKDGELVKKYIIN 471 (755)
Q Consensus 451 ~~p~~~i~~~~g~~l~~~~~~ 471 (755)
.||+++|++.+|+.|.+.+.+
T Consensus 94 ~IP~v~Is~~dG~~i~~~l~~ 114 (120)
T cd02129 94 DIPVALLSYKDMLDIQQTFGD 114 (120)
T ss_pred cccEEEEeHHHHHHHHHHhcc
Confidence 789999999999999988764
No 52
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=3.2e-07 Score=101.33 Aligned_cols=158 Identities=16% Similarity=0.158 Sum_probs=98.9
Q ss_pred cCCCCcCCCCCCccEEEEEcccccCCCCCCcCCCCCCCCcccccceeccccccccccCceeeeeeeccccccccCCCCCC
Q 037455 127 HAGVWPAAGFGSDIIVGILDTGIWPESKSYDDRGMPPVPERWRGACEVGVEFNTSHCNRKLIGARSFSKGIRQNGLNIST 206 (755)
Q Consensus 127 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~ 206 (755)
+...|..+++|+++.|+|.|.|++..||+.... ....+.+++.... +.
T Consensus 22 v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~-------------------------~~~~~s~d~~~~~-------~~ 69 (431)
T KOG3525|consen 22 VQNAWCKGYTGTRVSVTILDDGLECSHPDLRNN-------------------------YDPLGSYDVNRHD-------ND 69 (431)
T ss_pred eeeccccCCCCCceEEEEeeccccccCcccccc-------------------------cCcceeEeeecCC-------CC
Confidence 467999999999999999999999999999742 1122333332221 12
Q ss_pred CCCCCCCCCCCCCchhhhhhhccCCCCCCcccccCCceeeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHh-CCC
Q 037455 207 TDDYDSPRDFFGHGTHTSSTIGGSRVQDVDHFGYAKGTAIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIA-DGV 285 (755)
Q Consensus 207 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~-~g~ 285 (755)
+.+-.+......|||-||+-.+....+. .. ..|+++++++..++++...- ++...+...... .-+
T Consensus 70 p~~~~~~~~~~~~g~~Ca~~~a~~~~~~--~C------~vg~~~~~~~~g~~~l~~~v------~~~~~~~~~~~~~~~~ 135 (431)
T KOG3525|consen 70 PEPRCDGTNENKHGTRCAGCVAARANNL--TC------GVGVAYNATIGGIRMLAGCV------SDAVEAPSLGFGPCHI 135 (431)
T ss_pred cccccCCCCccccCCCCCcccccccCCC--cC------CCCcccCccccceeeeeeec------ccceecccccCCCCCc
Confidence 2222223346889999999999875221 11 27999999999999986422 122222222222 356
Q ss_pred cEEEEccCCCCCC-CCC---CHHHHHHHH-----HHhCCcEEEEecCCCCCCCC
Q 037455 286 DIMSLSLAFPETT-FDE---NPIAIGAFA-----ALKRGIFVACSAGNSGPRPY 330 (755)
Q Consensus 286 dVIn~SlG~~~~~-~~~---~~~~~a~~~-----a~~~Gi~vV~AAGN~g~~~~ 330 (755)
++-..|||..... ... .....+... ...+|-+.++|.||.|....
T Consensus 136 di~scsw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d 189 (431)
T KOG3525|consen 136 DIYSCSWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCGD 189 (431)
T ss_pred eeecCcCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCcccccc
Confidence 8889999986521 111 122222222 22467899999999886543
No 53
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.64 E-value=1.4e-07 Score=85.43 Aligned_cols=86 Identities=16% Similarity=0.203 Sum_probs=69.9
Q ss_pred CcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCC---cCC-------CCCccccEEEEec
Q 037455 390 KEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQ---HLS-------PEVFNMPFVAVNL 459 (755)
Q Consensus 390 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~---~~~-------~~~~~~p~~~i~~ 459 (755)
.+.|.+.. ...+++|||+|++||.|.|. +|..+++++||.++|++|+... ... .....+|+++|++
T Consensus 21 ~~gC~~~~-~~~~~~g~I~Lv~RG~C~F~---~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~ 96 (118)
T cd02127 21 LEACEELR-NIHDINGNIALIERGGCSFL---TKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLG 96 (118)
T ss_pred cccCCCCC-CccccCCeEEEEECCCCCHH---HHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecH
Confidence 46798644 35689999999999999988 9999999999999999998321 111 1235799999999
Q ss_pred cchHHHHHHHHhcCCcEEEE
Q 037455 460 KDGELVKKYIINVGNATVSI 479 (755)
Q Consensus 460 ~~g~~l~~~~~~~~~~~~~i 479 (755)
.+|+.|++.+..+..+++.+
T Consensus 97 ~dG~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 97 KNGYMIRKTLERLGLPYAII 116 (118)
T ss_pred HHHHHHHHHHHcCCceEEee
Confidence 99999999999988776654
No 54
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=98.55 E-value=8.2e-07 Score=81.40 Aligned_cols=94 Identities=19% Similarity=0.207 Sum_probs=72.7
Q ss_pred ceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCc-C-----CCCCc
Q 037455 377 SREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQH-L-----SPEVF 450 (755)
Q Consensus 377 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~-~-----~~~~~ 450 (755)
..-++++.. ...|.+.++ +.+++|||+|++|+.|.+. +|..+++++||.++|++|+.+.. . .....
T Consensus 22 ~~g~lv~~~----~~gC~~~~~-~~~~~gkIvlv~rg~c~f~---~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~ 93 (122)
T cd02130 22 VTGPLVVVP----NLGCDAADY-PASVAGNIALIERGECPFG---DKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGP 93 (122)
T ss_pred cEEEEEEeC----CCCCCcccC-CcCCCCEEEEEECCCCCHH---HHHHHHHHCCCcEEEEEECCCCcccccccCCCCCC
Confidence 345566642 346876555 3579999999999999887 99999999999999999884211 1 11246
Q ss_pred cccEEEEeccchHHHHHHHHhcCCcEEE
Q 037455 451 NMPFVAVNLKDGELVKKYIINVGNATVS 478 (755)
Q Consensus 451 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 478 (755)
.+|+++|+..+|+.|++.++++.+.+++
T Consensus 94 ~Ip~v~Is~~~G~~L~~~l~~g~~v~~~ 121 (122)
T cd02130 94 YVPTVGISQEDGKALVAALANGGEVSAN 121 (122)
T ss_pred EeeEEEecHHHHHHHHHHHhcCCcEEEe
Confidence 7999999999999999999888765543
No 55
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.51 E-value=4.4e-07 Score=82.70 Aligned_cols=84 Identities=19% Similarity=0.250 Sum_probs=68.1
Q ss_pred CcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecC-CCCcCC-----CCCccccEEEEeccchH
Q 037455 390 KEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSAD-SRQHLS-----PEVFNMPFVAVNLKDGE 463 (755)
Q Consensus 390 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~-~g~~~~-----~~~~~~p~~~i~~~~g~ 463 (755)
.+.|.+.... .+++|||+||.|+.|.+. +|..+++++||.++|++|+ .+.... .....+|+++|+.++|.
T Consensus 27 ~~~C~~~~~~-~~v~GkIvL~~rg~c~f~---~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~ 102 (118)
T cd04818 27 TDGCTAFTNA-AAFAGKIALIDRGTCNFT---VKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGD 102 (118)
T ss_pred ccccCCCCcC-CCCCCEEEEEECCCCCHH---HHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHH
Confidence 4679887763 469999999999999877 9999999999999999988 332111 12357999999999999
Q ss_pred HHHHHHHhcCCcEE
Q 037455 464 LVKKYIINVGNATV 477 (755)
Q Consensus 464 ~l~~~~~~~~~~~~ 477 (755)
.|++|++.+...++
T Consensus 103 ~l~~~l~~g~~v~v 116 (118)
T cd04818 103 ALKAALAAGGTVTV 116 (118)
T ss_pred HHHHHHhcCCcEEE
Confidence 99999998765544
No 56
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=98.50 E-value=4.7e-07 Score=83.27 Aligned_cols=84 Identities=21% Similarity=0.254 Sum_probs=67.7
Q ss_pred CcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecC-CCC-----cCC--------CCCccccEE
Q 037455 390 KEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSAD-SRQ-----HLS--------PEVFNMPFV 455 (755)
Q Consensus 390 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~-~g~-----~~~--------~~~~~~p~~ 455 (755)
.+.|.+... +.+++|||+|++||.|.|. +|..+++++||.++|++|+ ++. ... .+...||++
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~---~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v 102 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFV---EKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVV 102 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHH---HHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEE
Confidence 467986554 5679999999999999988 9999999999999999987 332 111 124578999
Q ss_pred EEeccchHHHHHHHHhcCCcEE
Q 037455 456 AVNLKDGELVKKYIINVGNATV 477 (755)
Q Consensus 456 ~i~~~~g~~l~~~~~~~~~~~~ 477 (755)
+|+..+|+.|++++..+...++
T Consensus 103 ~I~~~dG~~L~~~l~~~~~~~~ 124 (126)
T cd02126 103 FLFSKEGSKLLAAIKEHQNVEV 124 (126)
T ss_pred EEEHHHHHHHHHHHHhCCceEE
Confidence 9999999999999988765443
No 57
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.49 E-value=1.4e-06 Score=80.13 Aligned_cols=95 Identities=15% Similarity=0.158 Sum_probs=70.9
Q ss_pred eeEEeccCC--CCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecC-CCCcC--CCCCcccc
Q 037455 379 EPIYFGYGN--RSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSAD-SRQHL--SPEVFNMP 453 (755)
Q Consensus 379 ~~~~~~~~~--~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~-~g~~~--~~~~~~~p 453 (755)
+|++..... ...+.|.+...+..+++|||+|++||.|.+. +|..+++++||.++|+||+ ++... ..+...+|
T Consensus 28 ~p~~~~~~~~~~~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~---~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~ 104 (129)
T cd02124 28 LPLWALSLDTSVADDACQPLPDDTPDLSGYIVLVRRGTCTFA---TKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSII 104 (129)
T ss_pred ceEEEeecccCCCcccCcCCCcccccccCeEEEEECCCCCHH---HHHHHHHHcCCcEEEEEECCCCcccccCCCCccee
Confidence 565544332 3457898776666689999999999999888 9999999999999999988 33221 12233456
Q ss_pred EEEEeccchHHHHHHHHhcCCcEE
Q 037455 454 FVAVNLKDGELVKKYIINVGNATV 477 (755)
Q Consensus 454 ~~~i~~~~g~~l~~~~~~~~~~~~ 477 (755)
.+.+ +.+|+.|++.+..+...++
T Consensus 105 ~~~~-~~~G~~l~~~l~~G~~vtv 127 (129)
T cd02124 105 AAVT-PEDGEAWIDALAAGSNVTV 127 (129)
T ss_pred eEEe-HHHHHHHHHHHhcCCeEEE
Confidence 6666 9999999999987755433
No 58
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.45 E-value=6.3e-07 Score=83.88 Aligned_cols=91 Identities=12% Similarity=0.217 Sum_probs=70.4
Q ss_pred eeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCCC--------CC
Q 037455 378 REPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLSP--------EV 449 (755)
Q Consensus 378 ~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~~--------~~ 449 (755)
..+++... ..+.|.+.. .+++|||+|++||.|.|. +|..+++++||.++|+||+....... ..
T Consensus 39 ~~~lv~~~---~~~gC~~~~---~~~~g~IvLV~RG~C~F~---~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~ 109 (139)
T cd02132 39 KTRAVLAN---PLDCCSPST---SKLSGSIALVERGECAFT---EKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLN 109 (139)
T ss_pred EEEEEECC---cccccCCCC---cccCCeEEEEECCCCCHH---HHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCC
Confidence 34555432 246798754 479999999999999988 99999999999999999883221110 13
Q ss_pred ccccEEEEeccchHHHHHHHHhcCCcEE
Q 037455 450 FNMPFVAVNLKDGELVKKYIINVGNATV 477 (755)
Q Consensus 450 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~ 477 (755)
..||+++|++.+|+.|++.+..+...++
T Consensus 110 ~~IP~v~Is~~~G~~L~~~l~~g~~Vtv 137 (139)
T cd02132 110 ISIPVVMIPQSAGDALNKSLDQGKKVEV 137 (139)
T ss_pred CcEeEEEecHHHHHHHHHHHHcCCcEEE
Confidence 5899999999999999999988776543
No 59
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=98.44 E-value=7.5e-07 Score=81.74 Aligned_cols=86 Identities=16% Similarity=0.114 Sum_probs=67.5
Q ss_pred CcccCCCCCC--Cc----cccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecC-CCCcCC------------CCCc
Q 037455 390 KEICEPNSTD--SK----AVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSAD-SRQHLS------------PEVF 450 (755)
Q Consensus 390 ~~~c~~~~~~--~~----~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~-~g~~~~------------~~~~ 450 (755)
.+.|.+.... +. ...++|+|++||.|.|. +|..+++++||.++|++|+ ++.... .+..
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~---~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i 98 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFT---LKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKI 98 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEECCCcCHH---HHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCc
Confidence 4578766542 22 37889999999999999 9999999999999999998 432211 1134
Q ss_pred cccEEEEeccchHHHHHHHHhcCCcEEE
Q 037455 451 NMPFVAVNLKDGELVKKYIINVGNATVS 478 (755)
Q Consensus 451 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 478 (755)
.+|+++|+..+|+.|+..+..+...+++
T Consensus 99 ~IP~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 99 TIPSALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred eEeEEEECHHHHHHHHHHHhcCCeEEEe
Confidence 6999999999999999999988765543
No 60
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=98.42 E-value=8.2e-07 Score=81.79 Aligned_cols=83 Identities=17% Similarity=0.223 Sum_probs=67.5
Q ss_pred cccCCCC--CCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCC--cC-C-----CCCccccEEEEecc
Q 037455 391 EICEPNS--TDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQ--HL-S-----PEVFNMPFVAVNLK 460 (755)
Q Consensus 391 ~~c~~~~--~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~--~~-~-----~~~~~~p~~~i~~~ 460 (755)
..|.++. +...+++|||+||.|+.|.+. +|..+++++||.|+|++++... .. . .....+|++.|+..
T Consensus 31 ~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~---~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~ 107 (126)
T cd00538 31 VGCGYGTTDDSGADVKGKIVLVRRGGCSFS---EKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYA 107 (126)
T ss_pred EEEecCcccccCCCccceEEEEECCCcCHH---HHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHH
Confidence 4488776 667889999999999999777 9999999999999999988321 11 1 13467999999999
Q ss_pred chHHHHHHHHhcCCcE
Q 037455 461 DGELVKKYIINVGNAT 476 (755)
Q Consensus 461 ~g~~l~~~~~~~~~~~ 476 (755)
+|+.|++++.++.+.+
T Consensus 108 ~g~~l~~~~~~~~~v~ 123 (126)
T cd00538 108 DGEALLSLLEAGKTVT 123 (126)
T ss_pred HHHHHHHHHhcCCceE
Confidence 9999999998765543
No 61
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.39 E-value=1.2e-06 Score=81.12 Aligned_cols=71 Identities=18% Similarity=0.222 Sum_probs=58.4
Q ss_pred CCCccccceEEEEeecCCC-----chhHHHHHHHHHHcCceEEEEecCC---CCcC--CCC---CccccEEEEeccchHH
Q 037455 398 TDSKAVAGKYIFCAFDYNG-----NVTVYQQLEEVRKSGAAGAIFSADS---RQHL--SPE---VFNMPFVAVNLKDGEL 464 (755)
Q Consensus 398 ~~~~~~~gkivl~~~g~~~-----~~~~~~~~~~~~~~ga~g~i~~n~~---g~~~--~~~---~~~~p~~~i~~~~g~~ 464 (755)
+...+++|||+|++||.|. |. +|..+++++||.++|+||+. +... ..+ ...+|++.|++.+|+.
T Consensus 50 ~~~~d~~GkIaLI~RG~c~~~~~~f~---~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~ 126 (139)
T cd04817 50 YICGGMAGKICLIERGGNSKSVYPEI---DKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQA 126 (139)
T ss_pred ccCCCcCccEEEEECCCCCCCcccHH---HHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHH
Confidence 3456799999999999998 66 99999999999999999994 3211 111 4689999999999999
Q ss_pred HHHHHHh
Q 037455 465 VKKYIIN 471 (755)
Q Consensus 465 l~~~~~~ 471 (755)
|+..+..
T Consensus 127 L~~~l~~ 133 (139)
T cd04817 127 LLAALGQ 133 (139)
T ss_pred HHHHhcC
Confidence 9998754
No 62
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=98.37 E-value=1e-06 Score=79.54 Aligned_cols=77 Identities=14% Similarity=0.235 Sum_probs=63.2
Q ss_pred CcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecC-CCCcC---C----CCCccccEEEEeccc
Q 037455 390 KEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSAD-SRQHL---S----PEVFNMPFVAVNLKD 461 (755)
Q Consensus 390 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~-~g~~~---~----~~~~~~p~~~i~~~~ 461 (755)
.+.|.+. +..+++|||+|+.||+|.|. +|..+++++||.++|++|+ ++... . .....+|+++|++.+
T Consensus 27 ~~gC~~~--~~~~l~gkIvLV~RG~CsF~---~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~ 101 (117)
T cd04813 27 TDACSLQ--EHAEIDGKVALVLRGGCGFL---DKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTS 101 (117)
T ss_pred CCCCCCC--CcCCcCCeEEEEECCCCCHH---HHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHH
Confidence 4679766 55789999999999999888 9999999999999999988 33211 1 123579999999999
Q ss_pred hHHHHHHHHh
Q 037455 462 GELVKKYIIN 471 (755)
Q Consensus 462 g~~l~~~~~~ 471 (755)
++.|+.++..
T Consensus 102 g~~L~~l~~~ 111 (117)
T cd04813 102 YHLLSSLLPK 111 (117)
T ss_pred HHHHHHhccc
Confidence 9999987654
No 63
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=98.30 E-value=2.3e-06 Score=81.45 Aligned_cols=82 Identities=20% Similarity=0.268 Sum_probs=67.7
Q ss_pred CcccCCCCCCC---ccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCcCC---C-----CCccccEEEEe
Q 037455 390 KEICEPNSTDS---KAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQHLS---P-----EVFNMPFVAVN 458 (755)
Q Consensus 390 ~~~c~~~~~~~---~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~~~---~-----~~~~~p~~~i~ 458 (755)
.+.|.+....+ .++.|+|+|++||.|.|. +|..+++++||.++|++|+...... . ....+|+++|+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~---~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is 126 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFE---TKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVG 126 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHH---HHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEee
Confidence 56798776644 789999999999999988 9999999999999999998322221 1 13589999999
Q ss_pred ccchHHHHHHHHhcCC
Q 037455 459 LKDGELVKKYIINVGN 474 (755)
Q Consensus 459 ~~~g~~l~~~~~~~~~ 474 (755)
..+|+.|+.++.....
T Consensus 127 ~~dg~~L~~~l~~~~~ 142 (153)
T cd02123 127 KSTGEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHHHHhcCCc
Confidence 9999999999987654
No 64
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=1.7e-05 Score=94.41 Aligned_cols=94 Identities=19% Similarity=0.264 Sum_probs=58.7
Q ss_pred eeeecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCCC-cEEEEccCCCCCCC-----CCCHHHHHHHHHHhCCcEE
Q 037455 245 AIGVAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADGV-DIMSLSLAFPETTF-----DENPIAIGAFAALKRGIFV 318 (755)
Q Consensus 245 ~~GvAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g~-dVIn~SlG~~~~~~-----~~~~~~~a~~~a~~~Gi~v 318 (755)
.+-+||+|+|..|-. .. .....+..|+.+....=+ -+|-.||+...... .-+.+..-...|..+|+.+
T Consensus 288 s~A~AP~A~I~lvva--p~----~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi 361 (1174)
T COG4934 288 SHAMAPKANIDLVVA--PN----PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITI 361 (1174)
T ss_pred hhccCccCceEEEEc--CC----CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEE
Confidence 468999999998876 22 233333344433333211 34445776633211 1233444555677899999
Q ss_pred EEecCCCCCCCC--------ccccCCCceEEecc
Q 037455 319 ACSAGNSGPRPY--------SIRNGAPWITAVGA 344 (755)
Q Consensus 319 V~AAGN~g~~~~--------~~~~~~p~vitVga 344 (755)
++|+|-+|.... ..++.+|++++||-
T Consensus 362 ~AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 362 FAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred EEecccccccCCCcccceeecccCCCccEEeecC
Confidence 999999986653 34568999999996
No 65
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=98.17 E-value=2.6e-05 Score=71.93 Aligned_cols=90 Identities=13% Similarity=0.017 Sum_probs=69.3
Q ss_pred CCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCC--CchhHHHHHHHHHHcCceEEEEecC-CCCcC----C-
Q 037455 375 FVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYN--GNVTVYQQLEEVRKSGAAGAIFSAD-SRQHL----S- 446 (755)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~--~~~~~~~~~~~~~~~ga~g~i~~n~-~g~~~----~- 446 (755)
...+.+++|.+..... ++...+++|||+|+.++.| .+. +|..++++.||.++|++|+ ++... .
T Consensus 21 ~~~~~~lV~~g~G~~~------d~~~~~v~GkIvlv~~g~~~~~~~---~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~ 91 (127)
T cd04819 21 GEAKGEPVDAGYGLPK------DFDGLDLEGKIAVVKRDDPDVDRK---EKYAKAVAAGAAAFVVVNTVPGVLPATGDEG 91 (127)
T ss_pred CCeeEEEEEeCCCCHH------HcCCCCCCCeEEEEEcCCCchhHH---HHHHHHHHCCCEEEEEEeCCCCcCccccccc
Confidence 3457888887654332 2335679999999999998 555 9999999999999999987 44321 0
Q ss_pred ---CCCccccEEEEeccchHHHHHHHHhcC
Q 037455 447 ---PEVFNMPFVAVNLKDGELVKKYIINVG 473 (755)
Q Consensus 447 ---~~~~~~p~~~i~~~~g~~l~~~~~~~~ 473 (755)
.....+|++.|+.++|+.|...++.+.
T Consensus 92 ~~~~~~~~IP~v~Is~edg~~L~~~l~~g~ 121 (127)
T cd04819 92 TEDGPPSPIPAASVSGEDGLRLARVAERND 121 (127)
T ss_pred ccCCCCCCCCEEEEeHHHHHHHHHHHhcCC
Confidence 123579999999999999999998754
No 66
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=97.31 E-value=0.00078 Score=62.68 Aligned_cols=76 Identities=20% Similarity=0.253 Sum_probs=59.6
Q ss_pred CCccccceEEEEeecCC------CchhHHHH-------HHHHHHcCceEEEEecC-CCC--------cCC-CCCccccEE
Q 037455 399 DSKAVAGKYIFCAFDYN------GNVTVYQQ-------LEEVRKSGAAGAIFSAD-SRQ--------HLS-PEVFNMPFV 455 (755)
Q Consensus 399 ~~~~~~gkivl~~~g~~------~~~~~~~~-------~~~~~~~ga~g~i~~n~-~g~--------~~~-~~~~~~p~~ 455 (755)
...+++|||+++.++.| .+. .| ...++++||.++|++|. ++. ... .....+|++
T Consensus 34 ~~~~v~GKIvlv~~~~~~~~~~~~~~---~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v 110 (134)
T cd04815 34 PAGAVKGKIVFFNQPMVRTQTGSGYG---PTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAA 110 (134)
T ss_pred chhhcCCeEEEecCCccccCchhhcC---chhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEE
Confidence 45689999999999999 665 66 68999999999999985 221 111 123569999
Q ss_pred EEeccchHHHHHHHHhcCCcEE
Q 037455 456 AVNLKDGELVKKYIINVGNATV 477 (755)
Q Consensus 456 ~i~~~~g~~l~~~~~~~~~~~~ 477 (755)
.|+.+++..|...++.+....+
T Consensus 111 ~is~ed~~~L~r~l~~g~~v~~ 132 (134)
T cd04815 111 AISVEDADMLERLAARGKPIRV 132 (134)
T ss_pred EechhcHHHHHHHHhCCCCeEE
Confidence 9999999999999988765443
No 67
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=97.06 E-value=0.0013 Score=61.26 Aligned_cols=65 Identities=17% Similarity=0.147 Sum_probs=54.6
Q ss_pred CceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCch---------------hHHHHHHHHHHcCceEEEEecC
Q 037455 376 VSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNV---------------TVYQQLEEVRKSGAAGAIFSAD 440 (755)
Q Consensus 376 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~---------------~~~~~~~~~~~~ga~g~i~~n~ 440 (755)
....++|+.+.+.....|...++...|++|||||+.++.|... .+..|...++++||.|+|++++
T Consensus 19 ~~~aelVfvGyGi~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~ 98 (142)
T cd04814 19 IKDAPLVFVGYGIKAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHE 98 (142)
T ss_pred ccceeeEEecCCcCCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeC
Confidence 4568999988876677899888888999999999999877211 2448999999999999999998
No 68
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=97.03 E-value=0.0009 Score=64.87 Aligned_cols=92 Identities=13% Similarity=0.176 Sum_probs=64.4
Q ss_pred CceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCC---CCc--------
Q 037455 376 VSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADS---RQH-------- 444 (755)
Q Consensus 376 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~---g~~-------- 444 (755)
+.+-+++|.+.+...++ ........+++|||+|++++.|.+. +|..+|+++||+|+|+|++. +..
T Consensus 28 ~v~g~lVyvn~G~~~Df-~~L~~~gv~v~GkIvLvr~G~~~~~---~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g 103 (183)
T cd02128 28 TVTGKLVYANYGRKKDF-EDLQSVGVSVNGSVVLVRAGKISFA---EKVANAEKLGAVGVLIYPDPADFPIDPSETALFG 103 (183)
T ss_pred ceEEEEEEcCCCCHHHH-HHHHhcCCCCCCeEEEEECCCCCHH---HHHHHHHHCCCEEEEEecCHHHcCcccCcceeec
Confidence 44667888644322211 1111124689999999999999877 99999999999999999882 110
Q ss_pred ---------CC-------------C---CCccccEEEEeccchHHHHHHHHh
Q 037455 445 ---------LS-------------P---EVFNMPFVAVNLKDGELVKKYIIN 471 (755)
Q Consensus 445 ---------~~-------------~---~~~~~p~~~i~~~~g~~l~~~~~~ 471 (755)
+. . ....||+.-|+..++..|++.+.-
T Consensus 104 ~~~~~~GDplTPG~ps~~~~~~~~~~~~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 104 HVHLGTGDPYTPGFPSFNHTQFPPSQSSGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred ceeccCCCcCCCCCccccccccCcccccCCCCCCEeccCHHHHHHHHHHcCC
Confidence 00 0 124688999999999999998753
No 69
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=96.90 E-value=0.0024 Score=59.06 Aligned_cols=66 Identities=15% Similarity=0.078 Sum_probs=54.9
Q ss_pred CceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCc---------hhHHHHHHHHHHcCceEEEEecCC
Q 037455 376 VSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGN---------VTVYQQLEEVRKSGAAGAIFSADS 441 (755)
Q Consensus 376 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~---------~~~~~~~~~~~~~ga~g~i~~n~~ 441 (755)
...-++||.+.+.....|...++...+++|||||+.++.|.. .++..|..++.+.||.++|++++.
T Consensus 21 ~v~gelVfvGyG~~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~ 95 (137)
T cd04820 21 SVEAPLVFVGYGLVAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTP 95 (137)
T ss_pred CceEeEEEecCCcCccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCC
Confidence 456789998887777889888888889999999999988741 234489999999999999999983
No 70
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=96.89 E-value=0.0055 Score=57.80 Aligned_cols=65 Identities=15% Similarity=0.143 Sum_probs=52.9
Q ss_pred CceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCC---------------CchhHHHHHHHHHHcCceEEEEecC
Q 037455 376 VSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYN---------------GNVTVYQQLEEVRKSGAAGAIFSAD 440 (755)
Q Consensus 376 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~---------------~~~~~~~~~~~~~~~ga~g~i~~n~ 440 (755)
..+-++||.+.+.....|...++...+++|||||+.++.. .+.++..|..++++.||+++|++++
T Consensus 19 ~vtg~lVfvGyGi~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d 98 (151)
T cd04822 19 AVTAPVVFAGYGITAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNG 98 (151)
T ss_pred CceEeEEEecCCcCccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeC
Confidence 4567899988877778898888888899999999988741 1123448999999999999999998
No 71
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=96.59 E-value=0.044 Score=48.20 Aligned_cols=82 Identities=13% Similarity=0.146 Sum_probs=61.9
Q ss_pred ceEEEEEEEEecCCCCceEEEEEEcCCCcEEEEEeCeEEEecCCcEEEEEEEEEecCCcccCCCCCCeeEEEEEEEEeeC
Q 037455 655 ASFTFKRVLTNVADTKSAYTAAVKAPAGMKVKVQPATLSFAGKYSKAEFSLTVNINLGSAVSPKSNFLGNFGYLTWYDVN 734 (755)
Q Consensus 655 ~~~~~~~tv~N~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 734 (755)
...+.+++|+|.+..+..|++.......-.++++|..-.+ ++|++.+++|+|.+.. + .+ .+++.|.+ ..
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~~-----~-~g--~~~~~l~i--~~ 88 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPTK-----P-LG--DYEGSLVI--TT 88 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeCC-----C-Cc--eEEEEEEE--EE
Confidence 4667788999999999999997644234567778877677 7999999999999655 2 23 67899988 54
Q ss_pred CceEEEeEEEEEE
Q 037455 735 GKHLVRSPIVSAF 747 (755)
Q Consensus 735 ~~~~v~~P~~~~~ 747 (755)
....+.+|+-+..
T Consensus 89 e~~~~~i~v~a~~ 101 (102)
T PF14874_consen 89 EGGSFEIPVKAEV 101 (102)
T ss_pred CCeEEEEEEEEEE
Confidence 4467888876653
No 72
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=96.53 E-value=0.0084 Score=64.99 Aligned_cols=78 Identities=12% Similarity=0.174 Sum_probs=64.3
Q ss_pred CccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCC--------CCcCCCCCccccEEEEeccchHHHHHHHHh
Q 037455 400 SKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADS--------RQHLSPEVFNMPFVAVNLKDGELVKKYIIN 471 (755)
Q Consensus 400 ~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~--------g~~~~~~~~~~p~~~i~~~~g~~l~~~~~~ 471 (755)
...+++|++++.||+|.|. +|...++++||.+.++.|+. +.........||+++|++++++.+.....+
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft---~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~ 167 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFT---EKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRS 167 (541)
T ss_pred CccccceeEEEecccceee---hhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhcc
Confidence 4568999999999999999 99999999999999999982 222334468999999999999999987776
Q ss_pred cCCcEEEEe
Q 037455 472 VGNATVSIK 480 (755)
Q Consensus 472 ~~~~~~~i~ 480 (755)
+.+.++.+.
T Consensus 168 ~~~V~~~lY 176 (541)
T KOG2442|consen 168 NDNVELALY 176 (541)
T ss_pred CCeEEEEEE
Confidence 666555543
No 73
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=95.28 E-value=0.08 Score=44.09 Aligned_cols=57 Identities=18% Similarity=0.264 Sum_probs=38.0
Q ss_pred ceEEEEEEEEecCCCC-ceEEEEEEcCCCcEEEEEeCeEEEecCCcEEEEEEEEEecC
Q 037455 655 ASFTFKRVLTNVADTK-SAYTAAVKAPAGMKVKVQPATLSFAGKYSKAEFSLTVNINL 711 (755)
Q Consensus 655 ~~~~~~~tv~N~~~~~-~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~ 711 (755)
...+++++|+|.+..+ ...++++..|+|-++...|..+.--++|++++++++|+++.
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~ 62 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPA 62 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-T
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCC
Confidence 5788999999999765 45888888999999888888775337999999999999997
No 74
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=94.99 E-value=0.032 Score=51.99 Aligned_cols=61 Identities=8% Similarity=0.059 Sum_probs=46.7
Q ss_pred CCceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecC
Q 037455 375 FVSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSAD 440 (755)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~ 440 (755)
++.+-++||..-+...++-.-.. ..+++|||+|++.|...+- .|+.+|++.||.|+|+|.+
T Consensus 13 G~Vtg~~VYvNyG~~eDf~~L~~--~V~v~GkIvi~RyG~~~RG---~Kv~~A~~~GA~GviIYsD 73 (153)
T cd02131 13 GTLQAEVVDVQYGSVEDLRRIRD--NMNVTNQIALLKLGQAPLL---YKLSLLEEAGFGGVLLYVD 73 (153)
T ss_pred CceEEEEEEecCCCHHHHHHHHh--CCCccceEEEEeccCcchH---HHHHHHHHCCCeEEEEecC
Confidence 34466777766554444332222 2679999999999998888 9999999999999999988
No 75
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=94.47 E-value=0.064 Score=53.97 Aligned_cols=61 Identities=13% Similarity=0.133 Sum_probs=44.6
Q ss_pred CceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecC
Q 037455 376 VSREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSAD 440 (755)
Q Consensus 376 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~ 440 (755)
..+-++||.+.....++- .......+++|||+|++++.+.+. +|..+|++.||+|+|+|++
T Consensus 44 ~v~g~lVyvnyG~~~D~~-~L~~~gvdv~GKIvLvr~G~~~~~---~Kv~~A~~~GA~gVIiy~D 104 (220)
T cd02121 44 NVTAELVYANYGSPEDFE-YLEDLGIDVKGKIVIARYGGIFRG---LKVKNAQLAGAVGVIIYSD 104 (220)
T ss_pred CceEEEEEcCCCcHHHHH-HHhhcCCCCCCeEEEEECCCccHH---HHHHHHHHcCCEEEEEEeC
Confidence 456788886543222111 001125689999999999988766 8999999999999999988
No 76
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=94.47 E-value=0.92 Score=41.02 Aligned_cols=57 Identities=18% Similarity=0.191 Sum_probs=41.8
Q ss_pred ceEEEEEEEEecCCCCceEEEEEEcCCCcEEEEEeCeEEEecCCcEEEEEEEEEecCC
Q 037455 655 ASFTFKRVLTNVADTKSAYTAAVKAPAGMKVKVQPATLSFAGKYSKAEFSLTVNINLG 712 (755)
Q Consensus 655 ~~~~~~~tv~N~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~ 712 (755)
-...+++.|+|....+.+|++++..++|+++......+++ ++|++.++.|.|..+..
T Consensus 31 I~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~~ 87 (118)
T PF11614_consen 31 IRNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAPPD 87 (118)
T ss_dssp EEEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-GG
T ss_pred EEEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEECHH
Confidence 3567888999999999999999999889999655578899 79999999999999983
No 77
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=93.95 E-value=0.072 Score=49.09 Aligned_cols=97 Identities=11% Similarity=0.070 Sum_probs=70.1
Q ss_pred eeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecC-C-CCcC------C----
Q 037455 379 EPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSAD-S-RQHL------S---- 446 (755)
Q Consensus 379 ~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~-~-g~~~------~---- 446 (755)
.++|.... ..+|.... +.-...|.+++++||.|+|. .|..+++++||.++|+.++ . .... +
T Consensus 66 ~~lV~adP---p~aC~elr-N~~f~~d~vaL~eRGeCSFl---~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~s 138 (193)
T KOG3920|consen 66 LELVLADP---PHACEELR-NEIFAPDSVALMERGECSFL---VKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDES 138 (193)
T ss_pred cceeecCC---hhHHHHHh-hcccCCCcEEEEecCCceee---ehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCccc
Confidence 44554332 34464322 23457789999999999999 9999999999999999877 2 1111 1
Q ss_pred CCCccccEEEEeccchHHHHHHHHhcCCcEEEEeee
Q 037455 447 PEVFNMPFVAVNLKDGELVKKYIINVGNATVSIKFQ 482 (755)
Q Consensus 447 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~ 482 (755)
.+...+|++++-..+|..++.-++.-....+.|..+
T Consensus 139 q~~AniPa~fllg~~Gy~ir~sL~r~~r~ha~i~IP 174 (193)
T KOG3920|consen 139 QDRANIPAVFLLGVTGYYIRVSLKRYFRDHAKIDIP 174 (193)
T ss_pred ccccCCceEEEeccceEEEehhHHHhCCccEEEecc
Confidence 235789999999999998888887776666666544
No 78
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=93.68 E-value=1 Score=41.02 Aligned_cols=78 Identities=14% Similarity=0.192 Sum_probs=55.5
Q ss_pred cceeeeecCCCCceEEEEEEEEecCCCCceEEEEEEc----CCC--------------------cEEEEEeCeEEEecCC
Q 037455 643 PSFIIILNNTNTASFTFKRVLTNVADTKSAYTAAVKA----PAG--------------------MKVKVQPATLSFAGKY 698 (755)
Q Consensus 643 ~s~~~~~~~~~~~~~~~~~tv~N~~~~~~ty~~~~~~----~~g--------------------~~v~v~p~~~~~~~~g 698 (755)
..|.+.... ..+++++++|+|.++.+.+|.+++.. ..| --+++ |..+++ +++
T Consensus 17 ~YFdL~~~P--~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl-~~~ 92 (121)
T PF06030_consen 17 SYFDLKVKP--GQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTL-PPN 92 (121)
T ss_pred CeEEEEeCC--CCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEE-CCC
Confidence 345544443 26889999999999999999998741 111 01222 445888 799
Q ss_pred cEEEEEEEEEecCCcccCCCCCCeeEEEEEEE
Q 037455 699 SKAEFSLTVNINLGSAVSPKSNFLGNFGYLTW 730 (755)
Q Consensus 699 ~~~~~~vt~~~~~~~~~~~~~~~~~~~G~~~~ 730 (755)
++++++++++.|. ..-.+ .+-|-|.|
T Consensus 93 ~sk~V~~~i~~P~----~~f~G--~ilGGi~~ 118 (121)
T PF06030_consen 93 ESKTVTFTIKMPK----KAFDG--IILGGIYF 118 (121)
T ss_pred CEEEEEEEEEcCC----CCcCC--EEEeeEEE
Confidence 9999999999998 44555 77888887
No 79
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.84 E-value=0.44 Score=50.82 Aligned_cols=78 Identities=18% Similarity=0.239 Sum_probs=60.2
Q ss_pred cccCCCCCC---CccccceEEEEeecCCCchhHHHHHHHHHHcCceEEEEecCCCCc-C-----CCCCccccEEEEeccc
Q 037455 391 EICEPNSTD---SKAVAGKYIFCAFDYNGNVTVYQQLEEVRKSGAAGAIFSADSRQH-L-----SPEVFNMPFVAVNLKD 461 (755)
Q Consensus 391 ~~c~~~~~~---~~~~~gkivl~~~g~~~~~~~~~~~~~~~~~ga~g~i~~n~~g~~-~-----~~~~~~~p~~~i~~~~ 461 (755)
++|.+...- .......++++.||+|+|. +|+.+|+.+|..++|+||+.+.. . ......++.++++...
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe---~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ 139 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALIRRGGCSFE---DKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFS 139 (348)
T ss_pred cccCccccCccCCCCCcceEEEEEccCCchH---HHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeeh
Confidence 567654331 3456678999999999988 99999999999999999984332 2 1235678899999999
Q ss_pred hHHHHHHHHh
Q 037455 462 GELVKKYIIN 471 (755)
Q Consensus 462 g~~l~~~~~~ 471 (755)
|+.|.+|...
T Consensus 140 ge~l~~~~~~ 149 (348)
T KOG4628|consen 140 GELLSSYAGR 149 (348)
T ss_pred HHHHHHhhcc
Confidence 9999887543
No 80
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=91.68 E-value=0.44 Score=45.35 Aligned_cols=64 Identities=20% Similarity=0.185 Sum_probs=45.2
Q ss_pred ceeeEEeccCCCCCcccCCCCCCCccccceEEEEeecCCCch----------------hHHHHHHHHHHcCceEEEEecC
Q 037455 377 SREPIYFGYGNRSKEICEPNSTDSKAVAGKYIFCAFDYNGNV----------------TVYQQLEEVRKSGAAGAIFSAD 440 (755)
Q Consensus 377 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~----------------~~~~~~~~~~~~ga~g~i~~n~ 440 (755)
...++|+.+-+-....-...++...|++||||++..+.-.+. ....|...+.+.||.|+|+++.
T Consensus 22 ~~~elVFvGyGi~ape~~~dDy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~ 101 (157)
T cd04821 22 KDSPLVFVGYGIVAPEYGWDDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHE 101 (157)
T ss_pred ccCCEEEeccCccCcccCcccccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeC
Confidence 456788877654443334446667899999999997643211 1125899999999999999876
No 81
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=88.37 E-value=11 Score=33.97 Aligned_cols=54 Identities=11% Similarity=-0.025 Sum_probs=41.3
Q ss_pred eEEEEEEEEecCCCCceEEEEEEc---CCC----cEEEEEeCeEEEecCCcEEEEEEEEEecC
Q 037455 656 SFTFKRVLTNVADTKSAYTAAVKA---PAG----MKVKVQPATLSFAGKYSKAEFSLTVNINL 711 (755)
Q Consensus 656 ~~~~~~tv~N~~~~~~ty~~~~~~---~~g----~~v~v~p~~~~~~~~g~~~~~~vt~~~~~ 711 (755)
..+.+++|+|.++.+..+.+.+.. ... -.+-++|..+.+ ++|++++++| +....
T Consensus 15 ~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~~~ 75 (122)
T PF00345_consen 15 QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRGSK 75 (122)
T ss_dssp SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EECSG
T ss_pred CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-EecCC
Confidence 346677999999988888888764 111 257799999999 7999999999 77433
No 82
>COG1470 Predicted membrane protein [Function unknown]
Probab=84.63 E-value=15 Score=40.68 Aligned_cols=56 Identities=14% Similarity=0.286 Sum_probs=46.5
Q ss_pred ceEEEEEEEEecCCCCceEEEEEE-cCCCcEEEEEeC-----eEEEecCCcEEEEEEEEEecC
Q 037455 655 ASFTFKRVLTNVADTKSAYTAAVK-APAGMKVKVQPA-----TLSFAGKYSKAEFSLTVNINL 711 (755)
Q Consensus 655 ~~~~~~~tv~N~~~~~~ty~~~~~-~~~g~~v~v~p~-----~~~~~~~g~~~~~~vt~~~~~ 711 (755)
.+..|++++.|.|..+.+|.++.. .|+|-+....-. ++.+ ++|++++|+|.|.++.
T Consensus 284 ~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL-~~gE~kdvtleV~ps~ 345 (513)
T COG1470 284 TTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKL-KPGEEKDVTLEVYPSL 345 (513)
T ss_pred CceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEe-cCCCceEEEEEEecCC
Confidence 577999999999999999999998 788766554432 4566 6999999999999987
No 83
>COG1470 Predicted membrane protein [Function unknown]
Probab=84.23 E-value=8.3 Score=42.58 Aligned_cols=70 Identities=16% Similarity=0.158 Sum_probs=55.8
Q ss_pred ceEEEEEEEEecCCCCce-EEEEEEcCCCcEEEEEeCeEEEecCCcEEEEEEEEEecCCcccCCCCCCeeEEEEEEE
Q 037455 655 ASFTFKRVLTNVADTKSA-YTAAVKAPAGMKVKVQPATLSFAGKYSKAEFSLTVNINLGSAVSPKSNFLGNFGYLTW 730 (755)
Q Consensus 655 ~~~~~~~tv~N~~~~~~t-y~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~~~~~~~G~~~~ 730 (755)
..++..+.|.|.|+.+.| -++++..|.|-.+.|+|.++---++|+.+++.+|+++|.+ ...+ -++=+|+-
T Consensus 397 ee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~----a~aG--dY~i~i~~ 467 (513)
T COG1470 397 EEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPED----AGAG--DYRITITA 467 (513)
T ss_pred ccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCC----CCCC--cEEEEEEE
Confidence 467888899999988755 6799999999999999998765589999999999999983 3333 45555554
No 84
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=81.46 E-value=6.1 Score=44.24 Aligned_cols=56 Identities=14% Similarity=0.174 Sum_probs=49.1
Q ss_pred ceEEEEEEEEecCCCCceEEEEEEcCCCcEEEEEeCeEEEecCCcEEEEEEEEEecC
Q 037455 655 ASFTFKRVLTNVADTKSAYTAAVKAPAGMKVKVQPATLSFAGKYSKAEFSLTVNINL 711 (755)
Q Consensus 655 ~~~~~~~tv~N~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~ 711 (755)
....+++.|.|.++.+.+|+++++..++.++...++.+++ ++|+..++.|.+..+.
T Consensus 346 i~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v-~~g~~~~~~v~v~~~~ 401 (434)
T TIGR02745 346 VENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHV-KAGEKVKLPVFLRTPP 401 (434)
T ss_pred EEEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEE-CCCCEEEEEEEEEech
Confidence 3567888999999999999999999899888776557899 7999999999999986
No 85
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=81.25 E-value=8.7 Score=33.76 Aligned_cols=54 Identities=19% Similarity=0.174 Sum_probs=40.9
Q ss_pred ceEEEEEEEEecCCCCceEEEEEEcCCCcEEEEEeCeEEEecCCcEEEEEEEEEecC
Q 037455 655 ASFTFKRVLTNVADTKSAYTAAVKAPAGMKVKVQPATLSFAGKYSKAEFSLTVNINL 711 (755)
Q Consensus 655 ~~~~~~~tv~N~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~ 711 (755)
......++|+|.++....|++....|... .|.|..-.+ .+|++.+++|++....
T Consensus 18 ~~~~~~l~l~N~s~~~i~fKiktt~~~~y--~v~P~~G~i-~p~~~~~i~I~~~~~~ 71 (109)
T PF00635_consen 18 KQQSCELTLTNPSDKPIAFKIKTTNPNRY--RVKPSYGII-EPGESVEITITFQPFD 71 (109)
T ss_dssp S-EEEEEEEEE-SSSEEEEEEEES-TTTE--EEESSEEEE--TTEEEEEEEEE-SSS
T ss_pred ceEEEEEEEECCCCCcEEEEEEcCCCceE--EecCCCEEE-CCCCEEEEEEEEEecc
Confidence 34677779999999999999998777754 567998778 7999999999999865
No 86
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=79.99 E-value=1.2 Score=52.70 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.9
Q ss_pred CCCCCccEEEEEcccccCCCCCCc
Q 037455 134 AGFGSDIIVGILDTGIWPESKSYD 157 (755)
Q Consensus 134 ~~~G~Gv~VgVIDtGid~~Hp~f~ 157 (755)
.+.|+||+|||+|||+|+.-|-+.
T Consensus 77 eYDGRgV~IaIlDtGvDP~apGl~ 100 (1304)
T KOG1114|consen 77 EYDGRGVTIAILDTGVDPSAPGLQ 100 (1304)
T ss_pred CCCCCceEEEEeecCCCCCCCCce
Confidence 578999999999999999998875
No 87
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=68.80 E-value=42 Score=31.18 Aligned_cols=67 Identities=13% Similarity=0.286 Sum_probs=49.3
Q ss_pred eEEEEEEEEecCCCC-ceEEEEEEcCCCcEEEEEeCeEEEecCCcEEEEEEEEEecCCcccCCCCCCeeEEEEEEE
Q 037455 656 SFTFKRVLTNVADTK-SAYTAAVKAPAGMKVKVQPATLSFAGKYSKAEFSLTVNINLGSAVSPKSNFLGNFGYLTW 730 (755)
Q Consensus 656 ~~~~~~tv~N~~~~~-~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~~~~~~~G~~~~ 730 (755)
...+.+.|-|..+.. +..+++...-.+.++--.|..+++ .|++.++++.+|+..+ ...+ .+||.|++
T Consensus 70 DIvLDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL-~P~~~~~i~~~iKVsS-----tetG--vIfG~I~Y 137 (140)
T PF07718_consen 70 DIVLDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITL-APHGFARIKATIKVSS-----TETG--VIFGNIVY 137 (140)
T ss_pred eEEEEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceee-CCCcEEEEEEEEEEEe-----ccCC--EEEEEEEE
Confidence 455666777866542 344555555567888777888999 6899999999999987 2234 89999998
No 88
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=54.62 E-value=40 Score=28.02 Aligned_cols=38 Identities=29% Similarity=0.337 Sum_probs=28.2
Q ss_pred EEEEEeCeEEEecCCcEEEEEEEEEecCCcccCCCCCCeeEEEEEEEEe
Q 037455 684 KVKVQPATLSFAGKYSKAEFSLTVNINLGSAVSPKSNFLGNFGYLTWYD 732 (755)
Q Consensus 684 ~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~~~~~~~G~~~~~~ 732 (755)
.|++.|..+++ ..|+++.|+++++... .. - ...++|.+
T Consensus 4 ~i~i~p~~~~l-~~G~~~~l~a~~~~~~-------~~--~-~~~v~w~S 41 (81)
T smart00635 4 SVTVTPTTASV-KKGLTLQLTATVTPSS-------AK--V-TGKVTWTS 41 (81)
T ss_pred EEEEeCCeeEE-eCCCeEEEEEEEECCC-------CC--c-cceEEEEE
Confidence 57889999999 5899999999976544 11 2 46788943
No 89
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=50.63 E-value=76 Score=26.89 Aligned_cols=53 Identities=15% Similarity=0.119 Sum_probs=32.0
Q ss_pred ceEEEEEEEEecCCCC-ceEEEEEEcCCCcEEEEEeCeE-EEecCCcEEEEEEEEEecC
Q 037455 655 ASFTFKRVLTNVADTK-SAYTAAVKAPAGMKVKVQPATL-SFAGKYSKAEFSLTVNINL 711 (755)
Q Consensus 655 ~~~~~~~tv~N~~~~~-~ty~~~~~~~~g~~v~v~p~~~-~~~~~g~~~~~~vt~~~~~ 711 (755)
...+++++|+|.|... ..+.+.+.. .|..+ .-..+ .+ ++|++.++++++..+.
T Consensus 19 ~~~~i~~~V~N~G~~~~~~~~v~~~~-~~~~~--~~~~i~~L-~~g~~~~v~~~~~~~~ 73 (101)
T PF07705_consen 19 EPVTITVTVKNNGTADAENVTVRLYL-DGNSV--STVTIPSL-APGESETVTFTWTPPS 73 (101)
T ss_dssp SEEEEEEEEEE-SSS-BEEEEEEEEE-TTEEE--EEEEESEB--TTEEEEEEEEEE-SS
T ss_pred CEEEEEEEEEECCCCCCCCEEEEEEE-CCcee--ccEEECCc-CCCcEEEEEEEEEeCC
Confidence 5788999999999874 445665533 23233 22223 55 6888888888888764
No 90
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=50.54 E-value=94 Score=27.20 Aligned_cols=55 Identities=15% Similarity=0.184 Sum_probs=36.5
Q ss_pred ceEEEEEEEEecCCCC-ceEE-----EEEEcCCCcE---EEEEeCeEEEecCCcEEEEEEEEEecC
Q 037455 655 ASFTFKRVLTNVADTK-SAYT-----AAVKAPAGMK---VKVQPATLSFAGKYSKAEFSLTVNINL 711 (755)
Q Consensus 655 ~~~~~~~tv~N~~~~~-~ty~-----~~~~~~~g~~---v~v~p~~~~~~~~g~~~~~~vt~~~~~ 711 (755)
...++.++++|..+.. .+-+ .++.. .|+. +......+++ ++|++.+++++|.+..
T Consensus 15 ~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~y-tG~~~~~~~~~~~~~~l-~p~~~~~~~~~i~p~~ 78 (107)
T PF00927_consen 15 QDFTVSVSFTNPSSEPLRNVSLNLCAFTVEY-TGLTRDQFKKEKFEVTL-KPGETKSVEVTITPSQ 78 (107)
T ss_dssp SEEEEEEEEEE-SSS-EECEEEEEEEEEEEC-TTTEEEEEEEEEEEEEE--TTEEEEEEEEE-HHS
T ss_pred CCEEEEEEEEeCCcCccccceeEEEEEEEEE-CCcccccEeEEEcceee-CCCCEEEEEEEEEcee
Confidence 5788888999998876 4422 22232 4553 5666667788 6999999999999887
No 91
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=45.83 E-value=1.3e+02 Score=25.15 Aligned_cols=20 Identities=5% Similarity=-0.024 Sum_probs=12.9
Q ss_pred eEEEecCCcEEEEEEEEEecC
Q 037455 691 TLSFAGKYSKAEFSLTVNINL 711 (755)
Q Consensus 691 ~~~~~~~g~~~~~~vt~~~~~ 711 (755)
..++ ++|++++|+.++....
T Consensus 53 ~~~l-~pGe~~~~~~~~~~~~ 72 (82)
T PF12690_consen 53 EETL-EPGESLTYEETWDLKD 72 (82)
T ss_dssp EEEE--TT-EEEEEEEESS--
T ss_pred EEEE-CCCCEEEEEEEECCCC
Confidence 4567 6899999998887665
No 92
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=43.87 E-value=75 Score=23.15 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=25.6
Q ss_pred EEEEecCCCCceEEEEEEcCCCcEEEEEeCeEEEecCCcEEEEEEEE
Q 037455 661 RVLTNVADTKSAYTAAVKAPAGMKVKVQPATLSFAGKYSKAEFSLTV 707 (755)
Q Consensus 661 ~tv~N~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~ 707 (755)
++++|.|+.+..-. .+...-|- .+++.+.-.+ ++|++..++|++
T Consensus 2 F~~~N~g~~~L~I~-~v~tsCgC-t~~~~~~~~i-~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVIT-DVQTSCGC-TTAEYSKKPI-APGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEE-EeeEccCC-EEeeCCcceE-CCCCEEEEEEEC
Confidence 47899998765432 12222222 2233444446 689999988874
No 93
>TIGR03656 IsdC heme uptake protein IsdC. Isd proteins are iron-regulated surface proteins found in Bacillus, Staphylococcus and Listeria species and are responsible for heme scavenging from hemoproteins. The IsdC protein consists of an N-terminal hydrophobic signal sequence, a central NEAT (NEAr Transporter, pfam05031) domain which confers the ability to bind heme and a C-terminal SrtB processing signal which targets the protein to the cell wall. IsdC is believed to make a direct contact with, and transfer heme to, the heme-binding component (IsdE) of an ABC transporter in the cytoplasmic membrane, and to receive heme from other NEAT-containing heme-binding proteins also localized in the cell wall.
Probab=41.09 E-value=25 Score=35.19 Aligned_cols=38 Identities=29% Similarity=0.355 Sum_probs=25.3
Q ss_pred CCCcchH-HHHHHHHHHHHHhhcccccCCCCCeEEEEEC
Q 037455 1 MANFNPF-MFMILLLFLYVSYATSLSMSGDRKTYIIHMD 38 (755)
Q Consensus 1 M~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~yIV~l~ 38 (755)
||++..+ ++++++.|++.+...++++.-..|.|=|.++
T Consensus 1 mk~~~~~~~~~~~~~f~~~~~~~~~~~~L~DGtYsV~fk 39 (217)
T TIGR03656 1 MKKILVFAFFTTILAFIILSAGFSNSANLADGTYTINYT 39 (217)
T ss_pred CcchhhHHHHHHHHHHhcccccccccccccCceEEEEEE
Confidence 8888776 4455555555555555566667889988874
No 94
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=36.08 E-value=3.4e+02 Score=24.70 Aligned_cols=82 Identities=18% Similarity=0.071 Sum_probs=45.9
Q ss_pred ceEEEEEEEEecCCCCceEE----EEEEcCCCcEEEE-------EeCeEEEecCCcEEEEEEEEEecCCcccCCCC--CC
Q 037455 655 ASFTFKRVLTNVADTKSAYT----AAVKAPAGMKVKV-------QPATLSFAGKYSKAEFSLTVNINLGSAVSPKS--NF 721 (755)
Q Consensus 655 ~~~~~~~tv~N~~~~~~ty~----~~~~~~~g~~v~v-------~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~--~~ 721 (755)
+...+.++++|.|..+=+.. +......|..+.+ .+..++| ++|++..+.|+...... ... .
T Consensus 18 g~~~~~l~~tN~s~~~C~l~G~P~v~~~~~~g~~~~~~~~~~~~~~~~vtL-~PG~sA~a~l~~~~~~~----~~~~~~- 91 (131)
T PF14016_consen 18 GQRHATLTFTNTSDTPCTLYGYPGVALVDADGAPLGVPAVREGPPPRPVTL-APGGSAYAGLRWSNVGS----GGGCKP- 91 (131)
T ss_pred CccEEEEEEEECCCCcEEeccCCcEEEECCCCCcCCccccccCCCCCcEEE-CCCCEEEEEEEEecCCC----CCCcCc-
Confidence 56688899999987632211 1121222221111 2446888 79999999999998763 111 1
Q ss_pred eeEEEEEEEEeeCCceEEEeEE
Q 037455 722 LGNFGYLTWYDVNGKHLVRSPI 743 (755)
Q Consensus 722 ~~~~G~~~~~~~~~~~~v~~P~ 743 (755)
..-..|+.+-.++...+++|+
T Consensus 92 -~~~~~l~V~~p~~~~~~~v~~ 112 (131)
T PF14016_consen 92 -VTPAGLTVTPPGGTAPVTVPW 112 (131)
T ss_pred -cccCEEEEECCCCCccEEEeC
Confidence 122234442246666666665
No 95
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=35.78 E-value=1.5e+02 Score=31.56 Aligned_cols=26 Identities=15% Similarity=0.284 Sum_probs=16.7
Q ss_pred ceEEEEEEEEecCCCCceEEEEEEcC
Q 037455 655 ASFTFKRVLTNVADTKSAYTAAVKAP 680 (755)
Q Consensus 655 ~~~~~~~tv~N~~~~~~ty~~~~~~~ 680 (755)
....++++|+|..+.+.+-.+..+.|
T Consensus 242 ~~~~~~itv~N~~~~~v~v~v~d~iP 267 (317)
T PF13598_consen 242 RTYEYTITVRNNKDEPVTVTVEDQIP 267 (317)
T ss_pred EEEEEEEEEECCCCCCEEEEEEeCCC
Confidence 35666778888887766555554433
No 96
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=35.76 E-value=17 Score=16.45 Aligned_cols=6 Identities=50% Similarity=0.822 Sum_probs=4.3
Q ss_pred cccCCC
Q 037455 496 NFSSRG 501 (755)
Q Consensus 496 ~fSs~G 501 (755)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 477776
No 97
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=34.45 E-value=39 Score=24.21 Aligned_cols=24 Identities=13% Similarity=0.194 Sum_probs=18.9
Q ss_pred HHHHHhhCCCCCHHHHHHHHHccc
Q 037455 560 AALVKATHRDWSSAAIRSALMTTA 583 (755)
Q Consensus 560 aALl~q~~p~ls~~~ik~~L~~TA 583 (755)
+--|++.||++++..|+..|...-
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~ 28 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANN 28 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcC
Confidence 345789999999999999997654
No 98
>PLN03080 Probable beta-xylosidase; Provisional
Probab=33.41 E-value=1.4e+02 Score=36.48 Aligned_cols=84 Identities=13% Similarity=0.084 Sum_probs=45.7
Q ss_pred eEEEEEEEEecCCCCceEEEEE--EcCCC-c----EEEEEeCeEEEecCCcEEEEEEEEEe-cCCcccCCCCCCeeE--E
Q 037455 656 SFTFKRVLTNVADTKSAYTAAV--KAPAG-M----KVKVQPATLSFAGKYSKAEFSLTVNI-NLGSAVSPKSNFLGN--F 725 (755)
Q Consensus 656 ~~~~~~tv~N~~~~~~ty~~~~--~~~~g-~----~v~v~p~~~~~~~~g~~~~~~vt~~~-~~~~~~~~~~~~~~~--~ 725 (755)
..+++++|+|+|+..-.-.+.+ ..|.. . +--+--.++.+ ++||++++++++.. ..=+-....+. +. .
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L-~~Ges~~V~~~l~~~~~ls~~d~~~~--~~v~~ 761 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHT-ASGRSTETEIVVDPCKHLSVANEEGK--RVLPL 761 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCcEeEee-CCCCEEEEEEEeCchHHceEEcCCCc--EEEeC
Confidence 4788999999998765555553 23321 1 00011224566 68999999998876 32000011222 22 4
Q ss_pred EEEEEEeeCCceEEEeE
Q 037455 726 GYLTWYDVNGKHLVRSP 742 (755)
Q Consensus 726 G~~~~~~~~~~~~v~~P 742 (755)
|..++.-.+..|.|+++
T Consensus 762 G~y~l~vG~~~~~~~~~ 778 (779)
T PLN03080 762 GDHVLMLGDLEHSLSIE 778 (779)
T ss_pred ccEEEEEeCCccceEEe
Confidence 66555223556666654
No 99
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=32.43 E-value=35 Score=29.57 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=10.9
Q ss_pred CCCcchHHHHHHHHHHHHHhhccccc
Q 037455 1 MANFNPFMFMILLLFLYVSYATSLSM 26 (755)
Q Consensus 1 M~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (755)
|.+. .+++|.|+|.+++.++++.++
T Consensus 1 MaSK-~~llL~l~LA~lLlisSevaa 25 (95)
T PF07172_consen 1 MASK-AFLLLGLLLAALLLISSEVAA 25 (95)
T ss_pred Cchh-HHHHHHHHHHHHHHHHhhhhh
Confidence 6633 344444444333344444443
No 100
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=30.92 E-value=2.2e+02 Score=21.50 Aligned_cols=31 Identities=16% Similarity=0.276 Sum_probs=21.1
Q ss_pred ceEEEEEEEEecCCCCce-EEEEEEcCCCcEE
Q 037455 655 ASFTFKRVLTNVADTKSA-YTAAVKAPAGMKV 685 (755)
Q Consensus 655 ~~~~~~~tv~N~~~~~~t-y~~~~~~~~g~~v 685 (755)
...+++++++|.|....+ ..++-..|+|...
T Consensus 12 d~v~Yti~v~N~g~~~a~~v~v~D~lP~g~~~ 43 (53)
T TIGR01451 12 DTITYTITVTNNGNVPATNVVVTDILPSGTTF 43 (53)
T ss_pred CEEEEEEEEEECCCCceEeEEEEEcCCCCCEE
Confidence 578999999999987654 3333345666543
No 101
>PRK15019 CsdA-binding activator; Provisional
Probab=30.90 E-value=48 Score=31.23 Aligned_cols=33 Identities=12% Similarity=0.131 Sum_probs=27.9
Q ss_pred eeeccccchhhHHHHHHHHHHhhCCCCCHHHHHH
Q 037455 544 TLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRS 577 (755)
Q Consensus 544 ~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~ 577 (755)
..+.|.| =|+.|-|.+|||.+.+-+.+|+||.+
T Consensus 77 ~~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 77 MHFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 3444665 68999999999999999999999876
No 102
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=30.09 E-value=2.6e+02 Score=24.75 Aligned_cols=56 Identities=9% Similarity=0.004 Sum_probs=28.9
Q ss_pred ceEEEEEEEEecCCCCceEE---EEEEcCCCcEEEEEe---------CeEEEecCCcEEEEEEEEEecC
Q 037455 655 ASFTFKRVLTNVADTKSAYT---AAVKAPAGMKVKVQP---------ATLSFAGKYSKAEFSLTVNINL 711 (755)
Q Consensus 655 ~~~~~~~tv~N~~~~~~ty~---~~~~~~~g~~v~v~p---------~~~~~~~~g~~~~~~vt~~~~~ 711 (755)
.-..++++|+|.++.+..+. +.+....|-...... ..-++ ++|++.+..+.|.++.
T Consensus 36 ~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i-~pG~~~~g~l~F~vp~ 103 (123)
T PF11611_consen 36 KFVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETI-KPGESVTGKLVFEVPK 103 (123)
T ss_dssp EEEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE--TT-EEEEEEEEEEST
T ss_pred EEEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEE-CCCCEEEEEEEEEECC
Confidence 34677889999988765543 333333332222211 12355 5788888888888887
No 103
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=29.63 E-value=53 Score=30.62 Aligned_cols=35 Identities=9% Similarity=0.039 Sum_probs=28.9
Q ss_pred eeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHH
Q 037455 543 YTLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSA 578 (755)
Q Consensus 543 y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~ 578 (755)
-..+.|.| =|+.|-|.+|||.+.+-+.+|++|.+.
T Consensus 71 ~~~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~~ 105 (138)
T TIGR03391 71 TLHFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLAQ 105 (138)
T ss_pred EEEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence 34455666 589999999999999999999998743
No 104
>PRK13203 ureB urease subunit beta; Reviewed
Probab=29.43 E-value=1.5e+02 Score=25.83 Aligned_cols=17 Identities=18% Similarity=0.114 Sum_probs=13.4
Q ss_pred ceEEEEEEEEecCCCCc
Q 037455 655 ASFTFKRVLTNVADTKS 671 (755)
Q Consensus 655 ~~~~~~~tv~N~~~~~~ 671 (755)
+....+++|+|.|+.+.
T Consensus 18 gr~~~~l~V~NtGDRPI 34 (102)
T PRK13203 18 GRETVTLTVANTGDRPI 34 (102)
T ss_pred CCCEEEEEEEeCCCCce
Confidence 45677889999999863
No 105
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=29.29 E-value=1.2e+02 Score=24.58 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=21.6
Q ss_pred ceEEEEEEEEecCCCCce-EEEEEEcCCCcEE
Q 037455 655 ASFTFKRVLTNVADTKSA-YTAAVKAPAGMKV 685 (755)
Q Consensus 655 ~~~~~~~tv~N~~~~~~t-y~~~~~~~~g~~v 685 (755)
...+++++|+|.|+.... ..+.-..|+|+.+
T Consensus 41 d~v~ytitvtN~G~~~a~nv~v~D~lp~g~~~ 72 (76)
T PF01345_consen 41 DTVTYTITVTNTGPAPATNVVVTDTLPAGLTF 72 (76)
T ss_pred CEEEEEEEEEECCCCeeEeEEEEEcCCCCCEE
Confidence 578999999999987633 4444445666554
No 106
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=28.69 E-value=1.6e+02 Score=25.75 Aligned_cols=17 Identities=12% Similarity=0.034 Sum_probs=13.3
Q ss_pred ceEEEEEEEEecCCCCc
Q 037455 655 ASFTFKRVLTNVADTKS 671 (755)
Q Consensus 655 ~~~~~~~tv~N~~~~~~ 671 (755)
+....+++|+|.|+.+.
T Consensus 18 gr~~~~l~V~NtGDRpI 34 (101)
T cd00407 18 GREAVTLKVKNTGDRPI 34 (101)
T ss_pred CCCEEEEEEEeCCCcce
Confidence 45677889999999863
No 107
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=28.45 E-value=1.4e+02 Score=36.50 Aligned_cols=54 Identities=13% Similarity=0.214 Sum_probs=35.1
Q ss_pred ceEEEEEEEEecCCCCceEEEEE--EcCCCcEEEEEe-------CeEEEecCCcEEEEEEEEEecC
Q 037455 655 ASFTFKRVLTNVADTKSAYTAAV--KAPAGMKVKVQP-------ATLSFAGKYSKAEFSLTVNINL 711 (755)
Q Consensus 655 ~~~~~~~tv~N~~~~~~ty~~~~--~~~~g~~v~v~p-------~~~~~~~~g~~~~~~vt~~~~~ 711 (755)
.+.+++++|+|+|+..-.-.+++ ..|.+ .+. .| .++.+ ++||++++++++....
T Consensus 667 ~~i~v~v~V~NtG~~~G~EVvQlYv~~~~~-~~~-~P~k~L~gF~Kv~L-~pGes~~V~~~l~~~~ 729 (765)
T PRK15098 667 GKVTASVTVTNTGKREGATVVQLYLQDVTA-SMS-RPVKELKGFEKIML-KPGETQTVSFPIDIEA 729 (765)
T ss_pred CeEEEEEEEEECCCCCccEEEEEeccCCCC-CCC-CHHHhccCceeEeE-CCCCeEEEEEeecHHH
Confidence 46889999999998754444443 23322 111 12 23566 7999999998888754
No 108
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=27.02 E-value=1.9e+02 Score=25.30 Aligned_cols=17 Identities=18% Similarity=0.087 Sum_probs=13.3
Q ss_pred ceEEEEEEEEecCCCCc
Q 037455 655 ASFTFKRVLTNVADTKS 671 (755)
Q Consensus 655 ~~~~~~~tv~N~~~~~~ 671 (755)
+....+++|+|.|+.+.
T Consensus 18 gr~~~~l~V~NtGDRPI 34 (101)
T TIGR00192 18 GRKTVSVKVKNTGDRPI 34 (101)
T ss_pred CCcEEEEEEEeCCCcce
Confidence 45677889999999863
No 109
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=26.45 E-value=64 Score=30.04 Aligned_cols=33 Identities=18% Similarity=0.170 Sum_probs=27.9
Q ss_pred eeeccccchhhHHHHHHHHHHhhCCCCCHHHHHH
Q 037455 544 TLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRS 577 (755)
Q Consensus 544 ~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~ 577 (755)
..+.|.| =|+.|-|.+||+.+.+-..+|+||.+
T Consensus 67 ~~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 67 IELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 3444666 68999999999999999999999875
No 110
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=26.43 E-value=56 Score=22.18 Aligned_cols=13 Identities=31% Similarity=0.442 Sum_probs=10.8
Q ss_pred chhhHHHHHHHHH
Q 037455 551 MSCPHAAAIAALV 563 (755)
Q Consensus 551 mAaP~VAG~aALl 563 (755)
.|||.+||+++-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999998844
No 111
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=26.41 E-value=2.4e+02 Score=28.90 Aligned_cols=54 Identities=9% Similarity=0.069 Sum_probs=37.2
Q ss_pred eEEEEEEEEecCCCCceEEEEEE---cC---C----------CcEEEEEeCeEEEecCCcEEEEEEEEEec
Q 037455 656 SFTFKRVLTNVADTKSAYTAAVK---AP---A----------GMKVKVQPATLSFAGKYSKAEFSLTVNIN 710 (755)
Q Consensus 656 ~~~~~~tv~N~~~~~~ty~~~~~---~~---~----------g~~v~v~p~~~~~~~~g~~~~~~vt~~~~ 710 (755)
.....++|.|.|+.+..+.+.+. .| . --.+-++|..+++ ++|+++.|+|.-..+
T Consensus 32 ~~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L-~pg~~q~IRli~lg~ 101 (234)
T PRK15308 32 EEATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFAL-PAGTTRTVRVISLQA 101 (234)
T ss_pred cceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEE-CCCCeEEEEEEEcCC
Confidence 34456688999998888777763 11 1 1247788999999 688888877665443
No 112
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=25.90 E-value=62 Score=30.23 Aligned_cols=33 Identities=18% Similarity=0.111 Sum_probs=26.4
Q ss_pred eeeccccchhhHHHHHHHHHHhhCCCCCHHHHHH
Q 037455 544 TLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRS 577 (755)
Q Consensus 544 ~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~ 577 (755)
..+.|=|= |+.|.|.+|++++.+-..||++|.+
T Consensus 72 ~~F~gdSd-A~ivrGL~aill~~~~G~t~~eI~~ 104 (144)
T COG2166 72 LHFFGDSD-ARIVRGLLAILLAAYSGKTAAEILA 104 (144)
T ss_pred EEEeccch-hHHHHHHHHHHHHHHcCCCHHHHHc
Confidence 33445443 6899999999999999999999863
No 113
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=25.85 E-value=2e+02 Score=29.24 Aligned_cols=51 Identities=6% Similarity=-0.082 Sum_probs=34.8
Q ss_pred eEEEEEEEEecCCCCceEEEEE--EcCC---CcEEEEEeCeEEEecCCcEEEEEEEEEe
Q 037455 656 SFTFKRVLTNVADTKSAYTAAV--KAPA---GMKVKVQPATLSFAGKYSKAEFSLTVNI 709 (755)
Q Consensus 656 ~~~~~~tv~N~~~~~~ty~~~~--~~~~---g~~v~v~p~~~~~~~~g~~~~~~vt~~~ 709 (755)
....+++|+|.++.+ |-+.. +... ...+-|+|..+.+ ++|+++.++|....
T Consensus 39 ~~~~si~v~N~~~~p--~lvQ~wv~~~~~~~~~~fivtPPl~rl-~pg~~q~vRii~~~ 94 (230)
T PRK09918 39 DGEGSINVKNTDSNP--ILLYTTLVDLPEDKSKLLLVTPPVARV-EPGQSQQVRFILKS 94 (230)
T ss_pred CCeEEEEEEcCCCCc--EEEEEEEecCCCCCCCCEEEcCCeEEE-CCCCceEEEEEECC
Confidence 455566889988653 54443 2211 1357889999999 79999998887653
No 114
>PRK13202 ureB urease subunit beta; Reviewed
Probab=25.14 E-value=2e+02 Score=25.18 Aligned_cols=15 Identities=13% Similarity=0.142 Sum_probs=12.3
Q ss_pred EEEEEEEEecCCCCc
Q 037455 657 FTFKRVLTNVADTKS 671 (755)
Q Consensus 657 ~~~~~tv~N~~~~~~ 671 (755)
.+.+++|+|.|+.+.
T Consensus 21 ~~~~l~V~NtGDRPI 35 (104)
T PRK13202 21 SRLQMRIINAGDRPV 35 (104)
T ss_pred ceEEEEEEeCCCCce
Confidence 577889999999863
No 115
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=24.61 E-value=76 Score=28.99 Aligned_cols=34 Identities=12% Similarity=0.034 Sum_probs=27.1
Q ss_pred eeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHH
Q 037455 544 TLLSGTSMSCPHAAAIAALVKATHRDWSSAAIRSA 578 (755)
Q Consensus 544 ~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~ 578 (755)
..+.|.|= |+.|-|++||+.+.+-+.+|+||.+.
T Consensus 58 ~~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 58 VHFRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 35556665 67999999999999999999998754
No 116
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=24.09 E-value=2.5e+02 Score=27.76 Aligned_cols=17 Identities=18% Similarity=0.059 Sum_probs=13.6
Q ss_pred ceEEEEEEEEecCCCCc
Q 037455 655 ASFTFKRVLTNVADTKS 671 (755)
Q Consensus 655 ~~~~~~~tv~N~~~~~~ 671 (755)
+....+++|+|.|+.+.
T Consensus 127 gr~~~~l~V~NtGDRPI 143 (208)
T PRK13192 127 GRPAVTLDVTNTGDRPI 143 (208)
T ss_pred CCCEEEEEEEeCCCCce
Confidence 45678889999999863
No 117
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=23.82 E-value=1.1e+02 Score=21.98 Aligned_cols=25 Identities=12% Similarity=0.126 Sum_probs=21.1
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHccc
Q 037455 559 IAALVKATHRDWSSAAIRSALMTTA 583 (755)
Q Consensus 559 ~aALl~q~~p~ls~~~ik~~L~~TA 583 (755)
.+..|++.||+++...|+..|...-
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~~ 29 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEANN 29 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcC
Confidence 4567899999999999999998543
No 118
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=22.23 E-value=5.1e+02 Score=22.34 Aligned_cols=31 Identities=19% Similarity=0.360 Sum_probs=23.6
Q ss_pred eEEEEEEEEecCCCC-ceEEEEEEcCCCcEEE
Q 037455 656 SFTFKRVLTNVADTK-SAYTAAVKAPAGMKVK 686 (755)
Q Consensus 656 ~~~~~~tv~N~~~~~-~ty~~~~~~~~g~~v~ 686 (755)
-..-.++|+|.++.+ ..+++++..|.+.+|.
T Consensus 14 Gf~~~v~v~N~~~~~i~~W~v~~~~~~~~~i~ 45 (101)
T PF00553_consen 14 GFQGEVTVTNNGSSPINGWTVTFTFPSGQTIT 45 (101)
T ss_dssp EEEEEEEEEESSSSTEESEEEEEEESTTEEEE
T ss_pred CeEEEEEEEECCCCccCCEEEEEEeCCCCEEe
Confidence 355578999999876 4699999888776654
No 119
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=21.59 E-value=2.1e+02 Score=24.93 Aligned_cols=17 Identities=18% Similarity=0.079 Sum_probs=12.2
Q ss_pred ceEEEEEEEEecCCCCc
Q 037455 655 ASFTFKRVLTNVADTKS 671 (755)
Q Consensus 655 ~~~~~~~tv~N~~~~~~ 671 (755)
+..+.+++|+|.|+.+.
T Consensus 17 gr~~~~l~V~N~GDRPI 33 (100)
T PF00699_consen 17 GRERITLEVTNTGDRPI 33 (100)
T ss_dssp TSEEEEEEEEE-SSS-E
T ss_pred CCcEEEEEEEeCCCcce
Confidence 56788889999999863
No 120
>PRK13201 ureB urease subunit beta; Reviewed
Probab=21.41 E-value=2.5e+02 Score=25.81 Aligned_cols=17 Identities=12% Similarity=-0.095 Sum_probs=13.3
Q ss_pred ceEEEEEEEEecCCCCc
Q 037455 655 ASFTFKRVLTNVADTKS 671 (755)
Q Consensus 655 ~~~~~~~tv~N~~~~~~ 671 (755)
+..+.+++|+|.|+.+.
T Consensus 18 gr~~~~l~V~NtGDRPI 34 (136)
T PRK13201 18 HHPETVIEVENTGDRPI 34 (136)
T ss_pred CCCEEEEEEEeCCCcce
Confidence 45677889999999863
No 121
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=21.25 E-value=87 Score=24.06 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=23.0
Q ss_pred ceeeeccccchhhHHHHHHH------HHHhhCCCCCHHHHHHHHH
Q 037455 542 DYTLLSGTSMSCPHAAAIAA------LVKATHRDWSSAAIRSALM 580 (755)
Q Consensus 542 ~y~~~sGTSmAaP~VAG~aA------Ll~q~~p~ls~~~ik~~L~ 580 (755)
+--.+.||=+..=.|....+ -+.+.||.|+.++|+++|.
T Consensus 10 G~P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 10 GQPVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp G--EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred CcceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 34456677766555554432 2566699999999999884
No 122
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=20.77 E-value=2.8e+02 Score=31.11 Aligned_cols=75 Identities=17% Similarity=0.292 Sum_probs=55.6
Q ss_pred ecCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCC-CcEEEEccCCCC----CCCCCCHHHHHHHHHHhCCcEEEEec
Q 037455 248 VAPMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADG-VDIMSLSLAFPE----TTFDENPIAIGAFAALKRGIFVACSA 322 (755)
Q Consensus 248 vAP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g-~dVIn~SlG~~~----~~~~~~~~~~a~~~a~~~Gi~vV~AA 322 (755)
=.|.++++.|-+.-.+. .-...|++||+.|-+.+ +|||=.-=|+.+ ..+.++.+..| .....+.||.|-
T Consensus 159 R~P~~~viv~pt~VQG~---~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~vaRA---i~~s~iPvISAV 232 (440)
T COG1570 159 RFPSVEVIVYPTLVQGE---GAAEEIVEAIERANQRGDVDVLIVARGGGSIEDLWAFNDEIVARA---IAASRIPVISAV 232 (440)
T ss_pred hCCCCeEEEEeccccCC---CcHHHHHHHHHHhhccCCCCEEEEecCcchHHHHhccChHHHHHH---HHhCCCCeEeec
Confidence 35888999887754433 56789999999999887 999999999876 33444455533 335679999999
Q ss_pred CCCCCC
Q 037455 323 GNSGPR 328 (755)
Q Consensus 323 GN~g~~ 328 (755)
|-+-+.
T Consensus 233 GHEtD~ 238 (440)
T COG1570 233 GHETDF 238 (440)
T ss_pred ccCCCc
Confidence 987643
No 123
>PRK13205 ureB urease subunit beta; Reviewed
Probab=20.46 E-value=2.5e+02 Score=26.32 Aligned_cols=17 Identities=12% Similarity=-0.019 Sum_probs=13.6
Q ss_pred ceEEEEEEEEecCCCCc
Q 037455 655 ASFTFKRVLTNVADTKS 671 (755)
Q Consensus 655 ~~~~~~~tv~N~~~~~~ 671 (755)
+...++++|+|.|+.+.
T Consensus 18 GR~~i~L~V~NtGDRPI 34 (162)
T PRK13205 18 GREAKTIEIINTGDRPV 34 (162)
T ss_pred CCcEEEEEEEeCCCCce
Confidence 45678889999999863
No 124
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=20.39 E-value=3e+02 Score=29.36 Aligned_cols=73 Identities=18% Similarity=0.294 Sum_probs=50.4
Q ss_pred cCCCeEEEEEEeecCCCCCCChhHHHHHHHHHHhCC----CcEEEEccCCCC----CCCCCCHHHHHHHHHHhCCcEEEE
Q 037455 249 APMARIAMYKVLFSNDNLAAAETDVLAGMDQAIADG----VDIMSLSLAFPE----TTFDENPIAIGAFAALKRGIFVAC 320 (755)
Q Consensus 249 AP~A~l~~~kv~~~~g~~~~~~~~i~~ai~~a~~~g----~dVIn~SlG~~~----~~~~~~~~~~a~~~a~~~Gi~vV~ 320 (755)
.|.+++..|-+.-.+. ....+|+.||+.+-+.+ +|||-+-=|+.+ ..+.+..+.. ...+.-+.|+.
T Consensus 39 ~~~~~~~~~p~~vQG~---~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~var---ai~~~~~Pvis 112 (319)
T PF02601_consen 39 NPIVEIILYPASVQGE---GAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVAR---AIAASPIPVIS 112 (319)
T ss_pred CCCcEEEEEecccccc---chHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHH---HHHhCCCCEEE
Confidence 4666666665543322 56889999999998765 999999999876 2233333443 33356799999
Q ss_pred ecCCCCC
Q 037455 321 SAGNSGP 327 (755)
Q Consensus 321 AAGN~g~ 327 (755)
+-|=+-+
T Consensus 113 aIGHe~D 119 (319)
T PF02601_consen 113 AIGHETD 119 (319)
T ss_pred ecCCCCC
Confidence 9998854
Done!