Query 037456
Match_columns 123
No_of_seqs 137 out of 1676
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 12:28:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037456.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037456hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0156 Cytochrome P450 CYP2 s 99.8 1.1E-18 2.3E-23 122.3 9.4 70 1-70 28-97 (489)
2 PLN03234 cytochrome P450 83B1; 99.5 3.6E-13 7.8E-18 95.2 9.5 70 1-70 30-99 (499)
3 PLN00110 flavonoid 3',5'-hydro 99.5 9.1E-13 2E-17 93.4 10.3 68 1-69 33-100 (504)
4 PLN02655 ent-kaurene oxidase 99.4 4.2E-13 9E-18 94.2 8.0 69 1-69 1-69 (466)
5 PLN03112 cytochrome P450 famil 99.4 1.3E-12 2.7E-17 92.8 10.4 70 1-71 34-103 (514)
6 PLN02966 cytochrome P450 83A1 99.4 1.1E-12 2.4E-17 92.8 10.1 69 1-69 31-99 (502)
7 PLN02687 flavonoid 3'-monooxyg 99.4 1E-12 2.2E-17 93.3 9.9 68 1-69 36-103 (517)
8 PLN02183 ferulate 5-hydroxylas 99.4 1.9E-12 4.1E-17 91.9 9.6 69 1-70 38-106 (516)
9 PLN00168 Cytochrome P450; Prov 99.4 3.4E-12 7.4E-17 90.7 10.5 70 1-70 37-108 (519)
10 PTZ00404 cytochrome P450; Prov 99.4 2.2E-12 4.7E-17 90.9 8.9 68 1-69 31-98 (482)
11 PF00067 p450: Cytochrome P450 99.4 2.1E-12 4.7E-17 89.1 7.4 68 1-68 1-69 (463)
12 PLN03141 3-epi-6-deoxocathaste 99.4 4.5E-12 9.8E-17 88.7 8.5 68 1-68 9-80 (452)
13 PLN02500 cytochrome P450 90B1 99.4 4.9E-12 1.1E-16 89.3 8.2 67 1-67 40-110 (490)
14 PLN02290 cytokinin trans-hydro 99.3 7.7E-12 1.7E-16 88.8 9.2 68 1-69 44-129 (516)
15 PLN02971 tryptophan N-hydroxyl 99.3 4.1E-12 8.9E-17 90.8 7.4 70 1-70 59-130 (543)
16 PLN02774 brassinosteroid-6-oxi 99.3 7.9E-12 1.7E-16 87.7 8.1 65 1-66 33-97 (463)
17 PLN02196 abscisic acid 8'-hydr 99.3 1.3E-11 2.7E-16 86.8 8.8 65 1-65 37-101 (463)
18 KOG0158 Cytochrome P450 CYP3/C 99.3 2.3E-11 4.9E-16 85.5 8.6 83 2-84 34-143 (499)
19 PLN02394 trans-cinnamate 4-mon 99.3 5.9E-11 1.3E-15 84.1 10.8 69 1-69 32-100 (503)
20 PLN02302 ent-kaurenoic acid ox 99.2 1.9E-10 4.1E-15 81.1 9.3 61 1-61 44-110 (490)
21 KOG0157 Cytochrome P450 CYP4/C 99.2 1.6E-10 3.4E-15 82.0 7.6 113 1-113 37-181 (497)
22 PLN03018 homomethionine N-hydr 99.1 3.1E-10 6.8E-15 81.1 6.8 70 1-70 42-113 (534)
23 PLN02987 Cytochrome P450, fami 99.1 1.6E-10 3.5E-15 81.5 4.6 68 1-68 32-103 (472)
24 PLN02169 fatty acid (omega-1)- 99.0 2.4E-09 5.3E-14 76.0 7.5 68 2-69 34-106 (500)
25 PLN02936 epsilon-ring hydroxyl 99.0 4.9E-09 1.1E-13 74.3 8.6 67 3-69 16-86 (489)
26 PLN03195 fatty acid omega-hydr 98.9 4.6E-09 9.9E-14 74.8 6.7 66 1-68 32-100 (516)
27 PLN02648 allene oxide synthase 98.9 2.3E-09 5.1E-14 75.8 4.4 60 1-60 19-90 (480)
28 PLN02738 carotene beta-ring hy 98.9 2.4E-08 5.2E-13 72.9 9.4 61 9-69 141-201 (633)
29 KOG0159 Cytochrome P450 CYP11/ 98.8 3.7E-08 8E-13 69.2 7.8 111 2-113 53-207 (519)
30 KOG0684 Cytochrome P450 [Secon 98.4 1.4E-06 3E-11 60.6 6.7 54 7-61 40-93 (486)
31 PLN02426 cytochrome P450, fami 97.1 0.0044 9.5E-08 44.6 7.8 60 7-69 49-109 (502)
32 COG2124 CypX Cytochrome P450 [ 89.4 2.9 6.3E-05 29.6 7.0 40 22-61 25-66 (411)
33 PF13625 Helicase_C_3: Helicas 51.5 48 0.001 19.4 4.8 39 20-60 75-113 (129)
34 PRK10597 DNA damage-inducible 47.0 47 0.001 18.0 4.4 37 23-59 24-68 (81)
35 TIGR01661 ELAV_HUD_SF ELAV/HuD 39.4 1.2E+02 0.0027 20.7 5.4 49 9-60 273-330 (352)
36 PF08675 RNA_bind: RNA binding 36.9 76 0.0017 17.5 4.2 38 23-60 23-61 (87)
37 PF13893 RRM_5: RNA recognitio 35.9 55 0.0012 15.6 5.1 34 26-59 2-39 (56)
38 KOG0107 Alternative splicing f 35.6 1.1E+02 0.0025 19.4 4.1 34 24-57 26-63 (195)
39 COG3660 Predicted nucleoside-d 30.2 1.1E+02 0.0023 21.1 3.6 52 3-55 128-183 (329)
40 KOG2452 Formyltetrahydrofolate 26.0 2.9E+02 0.0063 20.8 5.4 63 35-97 648-712 (881)
41 PF03625 DUF302: Domain of unk 25.0 1E+02 0.0023 15.3 2.5 21 42-62 18-38 (65)
42 PLN03134 glycine-rich RNA-bind 24.4 1.7E+02 0.0037 17.5 5.1 39 22-60 48-95 (144)
43 PLN03120 nucleic acid binding 23.8 2.4E+02 0.0052 19.1 6.2 57 9-68 8-70 (260)
44 PF14811 TPD: Protein of unkno 22.4 1.1E+02 0.0024 18.5 2.5 22 22-43 100-122 (139)
45 COG1671 Uncharacterized protei 21.7 2.1E+02 0.0045 17.6 5.1 34 45-84 69-102 (150)
46 PF02639 DUF188: Uncharacteriz 20.9 2E+02 0.0043 17.1 5.5 35 44-84 53-87 (130)
47 TIGR01642 U2AF_lg U2 snRNP aux 20.7 3.5E+02 0.0075 19.8 5.8 46 23-68 434-492 (509)
No 1
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.78 E-value=1.1e-18 Score=122.30 Aligned_cols=70 Identities=47% Similarity=0.819 Sum_probs=65.6
Q ss_pred CCCCCCCCcccchhhhcCCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCcC
Q 037456 1 PPGPKSLPSIGNFHQWAGALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQRHE 70 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~~ 70 (123)
||||+++|++||++++.....+..+.+++++||+++.+++|..++|+++++++++|+|++++..|++|+.
T Consensus 28 PPGP~~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~~~Vviss~~~akE~l~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 28 PPGPPPLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSVPVVVISSYEAAKEVLVKQDLEFADRPD 97 (489)
T ss_pred CcCCCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCceEEEECCHHHHHHHHHhCCccccCCCC
Confidence 8999999999999998333489999999999999999999999999999999999999999999999985
No 2
>PLN03234 cytochrome P450 83B1; Provisional
Probab=99.48 E-value=3.6e-13 Score=95.17 Aligned_cols=70 Identities=44% Similarity=0.705 Sum_probs=60.5
Q ss_pred CCCCCCCCcccchhhhcCCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCcC
Q 037456 1 PPGPKSLPSIGNFHQWAGALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQRHE 70 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~~ 70 (123)
||||+++|++||+..+...++..++.+++++||+++++++|+.++++++|||++++|+.++...|.+++.
T Consensus 30 pPgp~~~P~iG~~~~~~~~~~~~~~~~~~~~yG~~~~~~lg~~~~vvv~dpe~~~~il~~~~~~f~~r~~ 99 (499)
T PLN03234 30 PPGPKGLPIIGNLHQMEKFNPQHFLFRLSKLYGPIFTMKIGGRRLAVISSAELAKELLKTQDLNFTARPL 99 (499)
T ss_pred CcCCCCCCeeccHHhcCCCCccHHHHHHHHHcCCeEEEEecCcCEEEECCHHHHHHHHHhCCccccCCCC
Confidence 6888899999999887333577888999999999999999999999999999999999887767776653
No 3
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.46 E-value=9.1e-13 Score=93.36 Aligned_cols=68 Identities=41% Similarity=0.765 Sum_probs=60.3
Q ss_pred CCCCCCCCcccchhhhcCCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCc
Q 037456 1 PPGPKSLPSIGNFHQWAGALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQRH 69 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~ 69 (123)
||||+++|++||+..+ ....+..+.+++++||+++++++|+.++++++||++++++|+++...|++++
T Consensus 33 pPgp~~~Pl~G~l~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~vl~~~~~~f~~r~ 100 (504)
T PLN00110 33 PPGPRGWPLLGALPLL-GNMPHVALAKMAKRYGPVMFLKMGTNSMVVASTPEAARAFLKTLDINFSNRP 100 (504)
T ss_pred cccCCCCCeeechhhc-CCchHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhcchhhcCCC
Confidence 6889999999999877 4557888999999999999999999999999999999999998776777765
No 4
>PLN02655 ent-kaurene oxidase
Probab=99.45 E-value=4.2e-13 Score=94.21 Aligned_cols=69 Identities=29% Similarity=0.467 Sum_probs=62.1
Q ss_pred CCCCCCCCcccchhhhcCCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCc
Q 037456 1 PPGPKSLPSIGNFHQWAGALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQRH 69 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~ 69 (123)
||||+++|++||+..+..++++..+.+++++||+++++++|+.++++++||+++++||.++...|++++
T Consensus 1 ppgp~~lP~iG~l~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~k~il~~~~~~f~~r~ 69 (466)
T PLN02655 1 VPAVPGLPVIGNLLQLKEKKPHRTFTKWSEIYGPIYTIRTGASSVVVLNSTEVAKEAMVTKFSSISTRK 69 (466)
T ss_pred CcCCCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEECCEeEEEeCCHHHHHHHHHhcCchhcCCC
Confidence 799999999999988744567889999999999999999999999999999999999998877777764
No 5
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.45 E-value=1.3e-12 Score=92.76 Aligned_cols=70 Identities=40% Similarity=0.718 Sum_probs=61.2
Q ss_pred CCCCCCCCcccchhhhcCCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCcCC
Q 037456 1 PPGPKSLPSIGNFHQWAGALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQRHET 71 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~~~ 71 (123)
||||+++|++||+..+ ..+.+..+.+++++||+++++++|+.+.++++||+++++|+.++...|++++..
T Consensus 34 ppgp~~~pl~G~~~~~-~~~~~~~~~~~~~kyG~v~~~~~g~~~~v~v~dpe~~~~vl~~~~~~f~~~~~~ 103 (514)
T PLN03112 34 PPGPPRWPIVGNLLQL-GPLPHRDLASLCKKYGPLVYLRLGSVDAITTDDPELIREILLRQDDVFASRPRT 103 (514)
T ss_pred ccCCCCCCeeeeHHhc-CCchHHHHHHHHHHhCCeEEEEecCccEEEECCHHHHHHHHHhCCcccccCCCc
Confidence 6899999999999877 456788899999999999999999999999999999999998877777776543
No 6
>PLN02966 cytochrome P450 83A1
Probab=99.45 E-value=1.1e-12 Score=92.81 Aligned_cols=69 Identities=38% Similarity=0.684 Sum_probs=59.7
Q ss_pred CCCCCCCCcccchhhhcCCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCc
Q 037456 1 PPGPKSLPSIGNFHQWAGALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQRH 69 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~ 69 (123)
||||+++|++||+..+...++...+.+++++||+++++++|+.+.++++||+++++|+.++...|.+++
T Consensus 31 ppgp~~~p~~G~l~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~p~~i~~vl~~~~~~~~~~~ 99 (502)
T PLN02966 31 PPGPSPLPVIGNLLQLQKLNPQRFFAGWAKKYGPILSYRIGSRTMVVISSAELAKELLKTQDVNFADRP 99 (502)
T ss_pred CcCCCCCCeeccHHhcCCCChhHHHHHHHHHhCCeEEEecCCCcEEEECCHHHHHHHHHhCcccccCCC
Confidence 688889999999987734467888999999999999999999999999999999999987766666553
No 7
>PLN02687 flavonoid 3'-monooxygenase
Probab=99.45 E-value=1e-12 Score=93.32 Aligned_cols=68 Identities=34% Similarity=0.727 Sum_probs=60.8
Q ss_pred CCCCCCCCcccchhhhcCCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCc
Q 037456 1 PPGPKSLPSIGNFHQWAGALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQRH 69 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~ 69 (123)
||||+++|++||+..+ ..+++..+.+++++||+++++++|+.++++++||++++++|+++...|.+++
T Consensus 36 pPgp~~~P~iG~~~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~p~~~~~il~~~~~~f~~r~ 103 (517)
T PLN02687 36 PPGPRGWPVLGNLPQL-GPKPHHTMAALAKTYGPLFRLRFGFVDVVVAASASVAAQFLRTHDANFSNRP 103 (517)
T ss_pred CccCCCCCccccHHhc-CCchhHHHHHHHHHhCCeeEEecCCceEEEeCCHHHHHHHHHhcchhhhcCC
Confidence 6788899999999887 4567889999999999999999999999999999999999998777787764
No 8
>PLN02183 ferulate 5-hydroxylase
Probab=99.42 E-value=1.9e-12 Score=91.94 Aligned_cols=69 Identities=38% Similarity=0.696 Sum_probs=59.4
Q ss_pred CCCCCCCCcccchhhhcCCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCcC
Q 037456 1 PPGPKSLPSIGNFHQWAGALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQRHE 70 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~~ 70 (123)
||||+++|++|++..+ ....+..+.+++++||+++++++|+.++++++||+++++|+.++...|++++.
T Consensus 38 ppgp~~~Pl~G~l~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~ 106 (516)
T PLN02183 38 PPGPKGLPIIGNMLMM-DQLTHRGLANLAKQYGGLFHMRMGYLHMVAVSSPEVARQVLQVQDSVFSNRPA 106 (516)
T ss_pred CcCCCCCCeeccHHhc-CCcchHHHHHHHHHhCCeeEEEeCCcceEEeCCHHHHHHHHHhhhhhhcCCCc
Confidence 6899999999999776 44456778999999999999999999999999999999999887666766653
No 9
>PLN00168 Cytochrome P450; Provisional
Probab=99.41 E-value=3.4e-12 Score=90.72 Aligned_cols=70 Identities=27% Similarity=0.491 Sum_probs=60.2
Q ss_pred CCCCCCCCcccchhhhc--CCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCcC
Q 037456 1 PPGPKSLPSIGNFHQWA--GALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQRHE 70 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~~ 70 (123)
||||+++|++||+..+. ..+++..+.+++++||+++++++|+.++++++||++++++++++...|++++.
T Consensus 37 pPgp~~~pl~G~l~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~il~~~~~~f~~rp~ 108 (519)
T PLN00168 37 PPGPPAVPLLGSLVWLTNSSADVEPLLRRLIARYGPVVSLRVGSRLSVFVADRRLAHAALVERGAALADRPA 108 (519)
T ss_pred CcCCCCCcccccHHhhccccccHHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhcCCccccCCc
Confidence 68888999999997652 23567889999999999999999999999999999999999887777777754
No 10
>PTZ00404 cytochrome P450; Provisional
Probab=99.40 E-value=2.2e-12 Score=90.90 Aligned_cols=68 Identities=35% Similarity=0.658 Sum_probs=59.2
Q ss_pred CCCCCCCCcccchhhhcCCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCc
Q 037456 1 PPGPKSLPSIGNFHQWAGALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQRH 69 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~ 69 (123)
+|||+++|++||+..+ ..+++..+.+++++||+++++++|+.+.++++||+++++++.++...|.+++
T Consensus 31 ~pgp~~~p~~G~~~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~r~ 98 (482)
T PTZ00404 31 LKGPIPIPILGNLHQL-GNLPHRDLTKMSKKYGGIFRIWFADLYTVVLSDPILIREMFVDNFDNFSDRP 98 (482)
T ss_pred CCCCCCCCeeccHhhh-cccHHHHHHHHHHHhCCeeEEEecCCCEEEECCHHHHHHHHHhcchhhcCCC
Confidence 5889899999999887 4567888999999999999999999999999999999999987655566554
No 11
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.37 E-value=2.1e-12 Score=89.11 Aligned_cols=68 Identities=34% Similarity=0.665 Sum_probs=60.3
Q ss_pred CCCCCCCCcccchhhhcC-CChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCC
Q 037456 1 PPGPKSLPSIGNFHQWAG-ALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQR 68 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~ 68 (123)
||||+++|++||+..+.. ++++..+.+++++||+++++++++.++++++||+++++|+.++...+..+
T Consensus 1 Ppgp~~~p~~G~~~~~~~~~~~~~~~~~~~~kyG~i~~~~~~~~~~vvv~~pe~~~~il~~~~~~~~~~ 69 (463)
T PF00067_consen 1 PPGPPPLPILGNLLQFRRKGNPHEFFRELHKKYGPIFRIWPGGQPIVVVSDPELIKEILRSRSKYFSFR 69 (463)
T ss_dssp SSCSSSBTTTBTHHHHHTTHHHHHHHHHHHHHHTSEEEEEETTEEEEEEESHHHHHHHHTTTTTTEEEE
T ss_pred CcCCCCcCceeEHHHhcCCCcHHHHHHHHHHHhCCEEEEeEecccccccccchhhcccccccccccccc
Confidence 899999999999999842 56788899999999999999999999999999999999998876555543
No 12
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=99.36 E-value=4.5e-12 Score=88.70 Aligned_cols=68 Identities=19% Similarity=0.313 Sum_probs=58.3
Q ss_pred CCCCCCCCcccchhhhc----CCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCC
Q 037456 1 PPGPKSLPSIGNFHQWA----GALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQR 68 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~ 68 (123)
||||.++|++||+..+. ..+++.++.+++++||+++++++|+.+.++++||++++++|+++...|..+
T Consensus 9 Ppg~~~~P~iG~~~~l~~~~~~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvv~~p~~~~~vl~~~~~~~~~~ 80 (452)
T PLN03141 9 PKGSLGWPVIGETLDFISCAYSSRPESFMDKRRSLYGKVFKSHIFGTPTIVSTDAEVNKVVLQSDGNAFVPA 80 (452)
T ss_pred CCCCCCCCchhhHHHHHhhcccCChHHHHHHHHHHhhheeeeccCCCCEEEEeCHHHhhHHHhCCCCeeecc
Confidence 67888999999998762 235778889999999999999999999999999999999998776666544
No 13
>PLN02500 cytochrome P450 90B1
Probab=99.35 E-value=4.9e-12 Score=89.31 Aligned_cols=67 Identities=16% Similarity=0.237 Sum_probs=56.1
Q ss_pred CCCCCCCCcccchhhhcC----CChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccC
Q 037456 1 PPGPKSLPSIGNFHQWAG----ALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQ 67 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~ 67 (123)
||||+++|++||+..+.. +.++..+.+++++||+++++++|+.++|+++||+++++||+++...|.+
T Consensus 40 PPgp~~~PiiGn~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~vl~~~~~~f~~ 110 (490)
T PLN02500 40 PPGNMGWPFLGETIGYLKPYSATSIGEFMEQHISRYGKIYRSNLFGEPTIVSADAGLNRFILQNEGRLFEC 110 (490)
T ss_pred CCCCcCCCchhhHHHHHhhcccCChHHHHHHHHHHhcccccccccCCCeEEecCHHHHHHHHhCCCCeEEe
Confidence 789999999999764321 3466778999999999999999999999999999999999877665643
No 14
>PLN02290 cytokinin trans-hydroxylase
Probab=99.35 E-value=7.7e-12 Score=88.80 Aligned_cols=68 Identities=21% Similarity=0.217 Sum_probs=54.0
Q ss_pred CCCCCCCCcccchhhhcC------------------CChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCc
Q 037456 1 PPGPKSLPSIGNFHQWAG------------------ALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNE 62 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~~------------------~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~ 62 (123)
||||+++|++||+..+.. ......+.+|+++||+++++++|+.+.++++||++++++++++.
T Consensus 44 ~PGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~v~~il~~~~ 123 (516)
T PLN02290 44 VRGPKPRPLTGNILDVSALVSQSTSKDMDSIHHDIVGRLLPHYVAWSKQYGKRFIYWNGTEPRLCLTETELIKELLTKYN 123 (516)
T ss_pred CCCCCCCcCCCCHHHHHHHHHHhhcCCCCCCCcccccccchHHHHHHHHhCCeEEEccCCccEEEECCHHHHHHHHhcCC
Confidence 689999999999987621 11223567899999999999999999999999999999998763
Q ss_pred ccccCCc
Q 037456 63 ISFAQRH 69 (123)
Q Consensus 63 ~~~~~~~ 69 (123)
.+..++
T Consensus 124 -~~~~r~ 129 (516)
T PLN02290 124 -TVTGKS 129 (516)
T ss_pred -CCCCCc
Confidence 343443
No 15
>PLN02971 tryptophan N-hydroxylase
Probab=99.34 E-value=4.1e-12 Score=90.78 Aligned_cols=70 Identities=24% Similarity=0.437 Sum_probs=60.3
Q ss_pred CCCCCCCCcccchhhhcCC-ChHHHHHHHHHhhC-CceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCcC
Q 037456 1 PPGPKSLPSIGNFHQWAGA-LPHQALTRLSKQHG-PVMKLQLGELLALVISSPGATQEVLKTNEISFAQRHE 70 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~~~-~~~~~~~~~~~~~g-~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~~ 70 (123)
||||+++|++||++.+... ..+..+.+++++|| +++++++|+.++++++||+++++||+++...|++|+.
T Consensus 59 PPGP~~lPiiGnl~~l~~~~~~~~~l~~~~~~yg~~i~~~~~G~~~~vvv~dpe~ikevl~~~~~~f~~rp~ 130 (543)
T PLN02971 59 PPGPTGFPIVGMIPAMLKNRPVFRWLHSLMKELNTEIACVRLGNTHVIPVTCPKIAREIFKQQDALFASRPL 130 (543)
T ss_pred CcCCCCCCcccchHHhccCCcHhHHHHHHHHHhCCceEEEEcCCcceEEECCHHHHHHHHHhcchhhcCCCc
Confidence 7899999999999877332 24677889999999 7999999999999999999999999988888888863
No 16
>PLN02774 brassinosteroid-6-oxidase
Probab=99.33 E-value=7.9e-12 Score=87.75 Aligned_cols=65 Identities=15% Similarity=0.236 Sum_probs=56.2
Q ss_pred CCCCCCCCcccchhhhcCCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCccccc
Q 037456 1 PPGPKSLPSIGNFHQWAGALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFA 66 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~ 66 (123)
||||+++|++||+..+ .++....+.+++++||+++++++|+.++++++||+++++++.++...|.
T Consensus 33 ppgp~~~P~~G~~~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~ 97 (463)
T PLN02774 33 PPGTMGWPLFGETTEF-LKQGPDFMKNQRLRYGSFFKSHILGCPTIVSMDPELNRYILMNEGKGLV 97 (463)
T ss_pred CCCCCCCCchhhHHHH-HHhhHHHHHHHHHHhccCccceecCCCeEEEeCHHHHHHHHcCCCCeEE
Confidence 6788899999998876 4456778899999999999999999999999999999999987665553
No 17
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.32 E-value=1.3e-11 Score=86.77 Aligned_cols=65 Identities=31% Similarity=0.400 Sum_probs=56.9
Q ss_pred CCCCCCCCcccchhhhcCCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccc
Q 037456 1 PPGPKSLPSIGNFHQWAGALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISF 65 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~ 65 (123)
||||+++|++||+..+...+++..+.+++++||+++++++++.++++++||+++++|+.++...|
T Consensus 37 Ppgp~~~P~iG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~ 101 (463)
T PLN02196 37 PPGTMGWPYVGETFQLYSQDPNVFFASKQKRYGSVFKTHVLGCPCVMISSPEAAKFVLVTKSHLF 101 (463)
T ss_pred CCCCCCCCccchHHHHHhcCHHHHHHHHHHHhhhhheeeecCCceEEEcCHHHHHHHHhCCCCcc
Confidence 67777899999988754567888999999999999999999999999999999999998766555
No 18
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.29 E-value=2.3e-11 Score=85.50 Aligned_cols=83 Identities=30% Similarity=0.394 Sum_probs=66.0
Q ss_pred CCCCCCCcccchhhhcC-CChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccC--CcCCCCC----
Q 037456 2 PGPKSLPSIGNFHQWAG-ALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQ--RHETFAG---- 74 (123)
Q Consensus 2 pgp~~~p~lG~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~--~~~~~~~---- 74 (123)
|+|+++|++||+..+.. +.......+.+.++|++++++.+..+.++++|||.+++|+++++.+|.+ ++...+.
T Consensus 34 ~~~~p~p~~Gn~~~~~~~~~~~~~~~~~~~~~~~~~G~y~~~~p~l~v~D~elik~I~ik~F~~F~~r~~~~~~d~~~~l 113 (499)
T KOG0158|consen 34 PGPKPLPFLGNLPGMLKRERPGDLLLDIYTKYRPVVGIYEGRQPALLVSDPELIKEILIKDFDNFYNRKRPIYGDPEDPL 113 (499)
T ss_pred CCCCCCCcEecHHHHHhccCcHHHHHHHHhcCCCEEEEEecCCcceEecCHHHHHHHHHHhCccCcCCCCCCcCCCCCcc
Confidence 67888999999988743 2235555555555699999999999999999999999999999999999 4332111
Q ss_pred -----------c---------cccCchHHH
Q 037456 75 -----------Q---------HLVTSAKIK 84 (123)
Q Consensus 75 -----------~---------~~fs~~~l~ 84 (123)
. |+||+.++|
T Consensus 114 ~~~~Lf~~~g~~WK~lR~~lsP~Fts~kmk 143 (499)
T KOG0158|consen 114 SALNLFFLRGERWKRLRTKLSPTFTSGKLK 143 (499)
T ss_pred cccCchhccCchHHHHHHhhccccchhhHH
Confidence 1 999999999
No 19
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=99.29 E-value=5.9e-11 Score=84.10 Aligned_cols=69 Identities=38% Similarity=0.685 Sum_probs=58.7
Q ss_pred CCCCCCCCcccchhhhcCCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCc
Q 037456 1 PPGPKSLPSIGNFHQWAGALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQRH 69 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~ 69 (123)
||||++.|++|++..+.....+..+.+++++||+++++++|+.++++++||+.+++++.++...|.+++
T Consensus 32 pPgp~~~p~~g~l~~~~~~~~~~~~~~~~~~yG~v~~i~~g~~~~v~v~dpe~i~~il~~~~~~~~~r~ 100 (503)
T PLN02394 32 PPGPAAVPIFGNWLQVGDDLNHRNLAEMAKKYGDVFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRT 100 (503)
T ss_pred CcCCCCCCeeeeHHhcCCCchhHHHHHHHHHhCCeEEEEcCCeeEEEeCCHHHHHHHHHhCCccccCCC
Confidence 689999999999987733335678899999999999999999999999999999999987766666554
No 20
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.19 E-value=1.9e-10 Score=81.15 Aligned_cols=61 Identities=23% Similarity=0.448 Sum_probs=52.7
Q ss_pred CCCCCCCCcccchhhhc----CCChHHHHHHHHHhhCC--ceEEEeCCeeEEEecCHHHHHHHHhhC
Q 037456 1 PPGPKSLPSIGNFHQWA----GALPHQALTRLSKQHGP--VMKLQLGELLALVISSPGATQEVLKTN 61 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~----~~~~~~~~~~~~~~~g~--~~~~~~g~~~~v~i~~p~~~~~vl~~~ 61 (123)
||||+++|++|++..+. ..+++..+.+++++||+ ++++++++.+.+++++|+++++|+.++
T Consensus 44 pPgp~~~PilG~l~~~~~~~~~~~~~~~~~~~~~kyG~~~i~~~~~~~~~~vvv~~pe~~~~vl~~~ 110 (490)
T PLN02302 44 PPGDLGWPVIGNMWSFLRAFKSSNPDSFIASFISRYGRTGIYKAFMFGQPTVLVTTPEACKRVLTDD 110 (490)
T ss_pred cCCCCCCCccccHHHHHHhcccCCcHHHHHHHHHHhCCCcceeeecCCCCeEEEcCHHHHHHHHcCC
Confidence 68899999999987652 23578889999999997 789899888999999999999999765
No 21
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=99.16 E-value=1.6e-10 Score=81.97 Aligned_cols=113 Identities=27% Similarity=0.361 Sum_probs=78.7
Q ss_pred CCCCCCCCcccchhhhcCC--ChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCcCC-------
Q 037456 1 PPGPKSLPSIGNFHQWAGA--LPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQRHET------- 71 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~~~------- 71 (123)
||||+++|++|++..+... +...+..++..+||++++.|+|+.+.++++||+.+++||.++...+.+.+..
T Consensus 37 ~~gp~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~dp~~~~~Il~~~~~~~~k~~~~~~~~~~~ 116 (497)
T KOG0157|consen 37 PPGPPGWPLIGNLLEFLKPLEEILDFVTELLSRYGPIFKTWLGGKPTVVTTDPELIEEILKSSNENYPKGPDYPESLKPW 116 (497)
T ss_pred CCCCCCCCcccchHHhhcchhHHHHHHHHHHHHcCchhhhhhcCeeEEEEcCHHHHHHHHhcCcccCCCchhHHHHHHHH
Confidence 6899999999999887333 5667888999999999999999999999999999999997655555444333
Q ss_pred CCCc-----------------cccCchHHHHHHHHHHHHHHh---h--h-ccccccccccchhhc
Q 037456 72 FAGQ-----------------HLVTSAKIKMILVPLVEEILP---L--A-AGFVITDLYPSLKFL 113 (123)
Q Consensus 72 ~~~~-----------------~~fs~~~l~~~~~~~~~~~~~---~--~-~~~~~~d~~p~~~~~ 113 (123)
.|.. ++|+.+.+++.+...++.... . . .....+|+.+.++.+
T Consensus 117 lG~gll~~~g~~W~~~Rk~~~~~f~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~ 181 (497)
T KOG0157|consen 117 LGDGLLFSDGEKWHKHRKLLTPAFHFEILKSFVPVFIESSLILLLLLELAASGEEVDLQDLLKRL 181 (497)
T ss_pred hcCccccCCchHHHHHHhhccHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEcHHHHHHHH
Confidence 2221 888888888333322222221 1 1 111116777777766
No 22
>PLN03018 homomethionine N-hydroxylase
Probab=99.09 E-value=3.1e-10 Score=81.10 Aligned_cols=70 Identities=20% Similarity=0.387 Sum_probs=55.6
Q ss_pred CCCCCCCCcccchhhhcCCCh-HHHHHHHHHhh-CCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCcC
Q 037456 1 PPGPKSLPSIGNFHQWAGALP-HQALTRLSKQH-GPVMKLQLGELLALVISSPGATQEVLKTNEISFAQRHE 70 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~~~~~-~~~~~~~~~~~-g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~~ 70 (123)
||||+++|++||++.+....+ ...+.+..++| |+++++++|+.++|+++||++++++|+++...|++|+.
T Consensus 42 PPgp~~~P~iGnl~~l~~~~~~~~~~~~~~~~~~g~i~~~~lg~~~~vvvsdpe~ikevl~~~~~~f~~rp~ 113 (534)
T PLN03018 42 PPGPPGWPILGNLPELIMTRPRSKYFHLAMKELKTDIACFNFAGTHTITINSDEIAREAFRERDADLADRPQ 113 (534)
T ss_pred CcCCCCCCeeccHHHhccCCCcchhHHHHHHHhCCCeEEEEeCCccEEEECCHHHHHHHHHhCcHhhcCCCC
Confidence 689999999999988632222 23355556665 79999999999999999999999999987777888763
No 23
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.08 E-value=1.6e-10 Score=81.47 Aligned_cols=68 Identities=19% Similarity=0.281 Sum_probs=58.3
Q ss_pred CCCCCCCCcccchhhhc----CCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCC
Q 037456 1 PPGPKSLPSIGNFHQWA----GALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQR 68 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~ 68 (123)
||||.++|++||+..+. ..++...+.+++++||+++++++++.++++++||+++++++.++...|.++
T Consensus 32 ppgp~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~l~~~~~vvv~~pe~~~~il~~~~~~f~~~ 103 (472)
T PLN02987 32 PPGSLGLPLVGETLQLISAYKTENPEPFIDERVARYGSLFMTHLFGEPTVFSADPETNRFILQNEGKLFECS 103 (472)
T ss_pred cCCCcCCCchhhHHHHHhhcccCChHHHHHHHHHHhchhhhhhhcCCCeEEEeCHHHHHHHHhCCCceEEec
Confidence 67888999999998763 245778889999999999999999899999999999999998877667554
No 24
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=98.98 E-value=2.4e-09 Score=76.03 Aligned_cols=68 Identities=13% Similarity=0.076 Sum_probs=51.9
Q ss_pred CCCCCCCcccchhhhcC--CChHHHHHHHHHhhCCceE---EEeCCeeEEEecCHHHHHHHHhhCcccccCCc
Q 037456 2 PGPKSLPSIGNFHQWAG--ALPHQALTRLSKQHGPVMK---LQLGELLALVISSPGATQEVLKTNEISFAQRH 69 (123)
Q Consensus 2 pgp~~~p~lG~~~~~~~--~~~~~~~~~~~~~~g~~~~---~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~ 69 (123)
|||+++|++||+..+.. ....+++.+...+||..++ .++|+.++++++||+++++||.++...|+++.
T Consensus 34 p~p~~~pl~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~vvv~dpe~i~~il~~~~~~~~k~~ 106 (500)
T PLN02169 34 PILKNWPFLGMLPGMLHQIPRIYDWTVEVLEASNLTFYFKGPWLSGTDMLFTADPKNIHHILSSNFGNYPKGP 106 (500)
T ss_pred CCCCCCCcccchHHHHHccCcHHHHHHHHHHhCCCcEEEEeeccCCCCeEEEcCHHHHHHHHhhCcccCCCcH
Confidence 78889999999976532 2344555566666886655 57788999999999999999998777777654
No 25
>PLN02936 epsilon-ring hydroxylase
Probab=98.97 E-value=4.9e-09 Score=74.26 Aligned_cols=67 Identities=21% Similarity=0.298 Sum_probs=55.1
Q ss_pred CCCCCCcccchhhhc----CCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCc
Q 037456 3 GPKSLPSIGNFHQWA----GALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQRH 69 (123)
Q Consensus 3 gp~~~p~lG~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~ 69 (123)
|-.|||++|+..... ....+..+.+++++||+++++++|+.+.+++++|+++++|++++...|.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~~~il~~~~~~f~~~~ 86 (489)
T PLN02936 16 DDSGIPVADAKLEDVTDLLGGALFLPLFKWMNEYGPVYRLAAGPRNFVVVSDPAIAKHVLRNYGSKYAKGL 86 (489)
T ss_pred CCCCCccHHhHHhhHHHHhccHHHHHHHHHHHHcCCEEEEccCCccEEEEcCHHHHHHHHHhccccccCcc
Confidence 345899999876542 3456778999999999999999999999999999999999987666676653
No 26
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=98.91 E-value=4.6e-09 Score=74.83 Aligned_cols=66 Identities=21% Similarity=0.211 Sum_probs=51.2
Q ss_pred CCCCCCCCcccchhhhcCCChHHHHHHHHHhh---CCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCC
Q 037456 1 PPGPKSLPSIGNFHQWAGALPHQALTRLSKQH---GPVMKLQLGELLALVISSPGATQEVLKTNEISFAQR 68 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~ 68 (123)
+|||+++|++||+..+.. + +..+.++.++| |+++.+++|+.+.++++||+++++|+.++...|.++
T Consensus 32 ~pgp~~~p~~G~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~ 100 (516)
T PLN03195 32 RKGPKSWPIIGAALEQLK-N-YDRMHDWLVEYLSKDRTVVVKMPFTTYTYIADPVNVEHVLKTNFANYPKG 100 (516)
T ss_pred cCCCCCCCeecchHHHHh-c-cchHHHHHHHHhccCCcEEEeeCCCCceEecCHHHHHHHHhhCccccCCc
Confidence 588999999999865422 2 33456777777 799999999999999999999999998654445544
No 27
>PLN02648 allene oxide synthase
Probab=98.88 E-value=2.3e-09 Score=75.77 Aligned_cols=60 Identities=10% Similarity=0.121 Sum_probs=50.2
Q ss_pred CCCCCCCCcccchhhhc----CCChHHHHHHHHHhhCC-ceEEEeCCeeE-------EEecCHHHHHHHHhh
Q 037456 1 PPGPKSLPSIGNFHQWA----GALPHQALTRLSKQHGP-VMKLQLGELLA-------LVISSPGATQEVLKT 60 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~----~~~~~~~~~~~~~~~g~-~~~~~~g~~~~-------v~i~~p~~~~~vl~~ 60 (123)
|||+.++|++|++..+. ..++..++.+.+++||+ +|+..+++.++ +++++|++++.+|.+
T Consensus 19 PPg~~g~P~iG~~~~~~~~~~~~~~~~F~~~~~~kyG~~vfk~~l~g~p~~~~~~~~v~~~~~e~~~~v~~~ 90 (480)
T PLN02648 19 IPGSYGLPFLGAIKDRLDYFYFQGEDEFFRSRVEKYKSTVFRVNMPPGPFIAPDPRVIALLDQKSFPVLFDV 90 (480)
T ss_pred CCCCCCCcCcchhhhhhhHHHhcChHHHHHHHHHHhCCceEEecCCCCCCCCCCCCEEEEEcCCceeeeecc
Confidence 67888999999997531 34557889999999998 99999887555 999999999999974
No 28
>PLN02738 carotene beta-ring hydroxylase
Probab=98.87 E-value=2.4e-08 Score=72.85 Aligned_cols=61 Identities=20% Similarity=0.335 Sum_probs=49.9
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCc
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQRH 69 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~ 69 (123)
.+||+..+..+..+..+.+++++||+++++++|+.++++++||+.+++|+.++...|.++.
T Consensus 141 ~~G~l~~i~~g~~~~~l~~lh~kYGpI~ri~lGp~~~vvIsDpe~i~eIl~~~~~~f~k~~ 201 (633)
T PLN02738 141 AKGSISAVRGEAFFIPLYELFLTYGGIFRLTFGPKSFLIVSDPSIAKHILRDNSKAYSKGI 201 (633)
T ss_pred ccCcHHHhcCchHHHHHHHHHHHhCCEEEEEeCCCCEEEECCHHHHHHHHhhCcccCCCcc
Confidence 3566666534556788999999999999999999889999999999999987666666653
No 29
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.79 E-value=3.7e-08 Score=69.18 Aligned_cols=111 Identities=21% Similarity=0.363 Sum_probs=79.8
Q ss_pred CCCCCCCcccchhhh---cCCChHHHHHHHHHhhCCceEEE-eCCeeEEEecCHHHHHHHHhhCcccccCCc-CC-----
Q 037456 2 PGPKSLPSIGNFHQW---AGALPHQALTRLSKQHGPVMKLQ-LGELLALVISSPGATQEVLKTNEISFAQRH-ET----- 71 (123)
Q Consensus 2 pgp~~~p~lG~~~~~---~~~~~~~~~~~~~~~~g~~~~~~-~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~-~~----- 71 (123)
|+|+++|++|.+..+ ...+.++....++++||+|++.. +|....|++.||+.++.+++++. .++-|+ ..
T Consensus 53 P~p~~~~~l~~l~~~~~~~~~~lh~~~~~~~~~YG~I~~~~~~G~~~~V~v~~p~d~E~v~r~EG-~~P~Rp~~~~~w~~ 131 (519)
T KOG0159|consen 53 PGPKGLPFLGLLWIWRAGGATKLHQHIVQLHQKYGPIFREGMLGRVDLVHVYNPDDVEKVFRNEG-KYPFRPLLIEPWVA 131 (519)
T ss_pred CCCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHcCceeeeccCCCCCeEEeeCHHHHHHHHhcCC-CCCCcccccchhhh
Confidence 788899999998732 23577888999999999999999 78889999999999999998765 356775 22
Q ss_pred --------CCCc----------------cccCchHHH----------HHHHHHHHHHHhhhccccccccccchhhc
Q 037456 72 --------FAGQ----------------HLVTSAKIK----------MILVPLVEEILPLAAGFVITDLYPSLKFL 113 (123)
Q Consensus 72 --------~~~~----------------~~fs~~~l~----------~~~~~~~~~~~~~~~~~~~~d~~p~~~~~ 113 (123)
+|.. .+++++.++ +++++.+++..+...+.-+.|+...+.++
T Consensus 132 ~rd~~~~~~Gl~~~~G~~W~~~Rs~ln~~ll~P~~v~~yl~~l~~V~~DF~~~l~~~r~~~~~~~~~D~~~~l~~w 207 (519)
T KOG0159|consen 132 YRDFRGGVCGLFLLEGPEWQRLRSALNPLLLQPQAVRRYLPQLNAVSDDFVERLRAQRDPERGELVPDFAQELYRW 207 (519)
T ss_pred hHHhhccCCCcccCCCHHHHHHHHHhchhhcCHHHHHHHhhHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHH
Confidence 1111 566666666 66777776666643333445665555554
No 30
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.39 E-value=1.4e-06 Score=60.60 Aligned_cols=54 Identities=22% Similarity=0.306 Sum_probs=50.3
Q ss_pred CCcccchhhhcCCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhC
Q 037456 7 LPSIGNFHQWAGALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTN 61 (123)
Q Consensus 7 ~p~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~ 61 (123)
.|++|++..+ ++++.+++.+.+++||++|.+.+++..+-++.+|+....++.+.
T Consensus 40 iP~lG~a~~f-gk~P~eFl~~~~~K~GdVFTv~l~Gk~~Tfll~p~~~~~v~~~~ 93 (486)
T KOG0684|consen 40 IPWLGSALAF-GKDPLEFLRECRKKYGDVFTVLLMGKYMTFLLGPEGYDFVFKAK 93 (486)
T ss_pred cchhhHHHHh-ccCHHHHHHHHHHhcCCeEEEEEcCcEEEEEeCchhhHHHHcCc
Confidence 7899999998 88999999999999999999999999899999999999999665
No 31
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=97.09 E-value=0.0044 Score=44.61 Aligned_cols=60 Identities=8% Similarity=0.015 Sum_probs=41.5
Q ss_pred CCcccchhhhcCCChHHHHHHHHHhhC-CceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCc
Q 037456 7 LPSIGNFHQWAGALPHQALTRLSKQHG-PVMKLQLGELLALVISSPGATQEVLKTNEISFAQRH 69 (123)
Q Consensus 7 ~p~lG~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~ 69 (123)
.++.|+.... ..+..+++.++.++++ ..++++..+. ++++||+++++|+.++...|.++.
T Consensus 49 ~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--iv~~dpe~i~~vl~~~~~~~~k~~ 109 (502)
T PLN02426 49 AYLTASWAKD-FDNLCDWYAHLLRRSPTGTIHVHVLGN--TITANPENVEYMLKTRFDNYPKGK 109 (502)
T ss_pred CCccHHHHHh-cccHHHHHHHHHHhCCCcEEEEecCCc--EEecCHHHHHHHHhhChhcCCCcH
Confidence 4567777654 2345667767888777 4566654443 788999999999987766676543
No 32
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=89.38 E-value=2.9 Score=29.60 Aligned_cols=40 Identities=28% Similarity=0.301 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhCCceEEEeCCe--eEEEecCHHHHHHHHhhC
Q 037456 22 HQALTRLSKQHGPVMKLQLGEL--LALVISSPGATQEVLKTN 61 (123)
Q Consensus 22 ~~~~~~~~~~~g~~~~~~~g~~--~~v~i~~p~~~~~vl~~~ 61 (123)
......+.+.|+.+..+...+. ..+++++++.+++++++.
T Consensus 25 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~~v~~v~~~~ 66 (411)
T COG2124 25 RFFLERAEDPYGDYFTLRLPGPGDGFWVVSRPADVREVLRDP 66 (411)
T ss_pred hhhHHHHhCCCchhhhhhccCccceEEEEcCHHHHHHHHcCc
Confidence 4445567777887777764433 378899999999999875
No 33
>PF13625 Helicase_C_3: Helicase conserved C-terminal domain
Probab=51.51 E-value=48 Score=19.37 Aligned_cols=39 Identities=18% Similarity=0.207 Sum_probs=28.3
Q ss_pred ChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhh
Q 037456 20 LPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKT 60 (123)
Q Consensus 20 ~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~ 60 (123)
+....+.+|.++||.+.... ....+...|++.+++++..
T Consensus 75 ~v~~~i~~w~~~~g~v~l~~--~~~~l~~~d~~~l~~l~~~ 113 (129)
T PF13625_consen 75 NVEQSIEDWARRYGRVRLYK--GAYLLECDDPELLDELLAD 113 (129)
T ss_pred HHHHHHHHHHHhcCCEEEec--CeEEEEECCHHHHHHHHhC
Confidence 44567889999999766532 3456667899999999753
No 34
>PRK10597 DNA damage-inducible protein I; Provisional
Probab=47.00 E-value=47 Score=18.04 Aligned_cols=37 Identities=11% Similarity=0.149 Sum_probs=25.0
Q ss_pred HHHHHHHHhhCCc---eEEEeCCeeEEEecCH-----HHHHHHHh
Q 037456 23 QALTRLSKQHGPV---MKLQLGELLALVISSP-----GATQEVLK 59 (123)
Q Consensus 23 ~~~~~~~~~~g~~---~~~~~g~~~~v~i~~p-----~~~~~vl~ 59 (123)
+...++.+.|.++ +++..+..+.+-+.+. +.+.++|.
T Consensus 24 EL~kRl~~~fPd~~~~v~Vr~~s~n~lsv~g~~k~dK~~i~eiLq 68 (81)
T PRK10597 24 ELSRRIQYAFPDNEGHVSVRYAAANNLSVIGATKEDKDRISEILQ 68 (81)
T ss_pred HHHHHHHhhCCCCCccEEEeecCCCceEecCCCcchHHHHHHHHH
Confidence 4456788889876 7888887777766433 55555553
No 35
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=39.37 E-value=1.2e+02 Score=20.72 Aligned_cols=49 Identities=10% Similarity=0.032 Sum_probs=32.6
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC---------CeeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG---------ELLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g---------~~~~v~i~~p~~~~~vl~~ 60 (123)
++||+..- ..-+.+.++..+||++....+. +.-+|...+++.+...+.+
T Consensus 273 fV~NL~~~---~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~ 330 (352)
T TIGR01661 273 FVYNLSPD---TDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILS 330 (352)
T ss_pred EEeCCCCC---CCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHH
Confidence 45666432 3345677888999998776542 2246777888888777653
No 36
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=36.89 E-value=76 Score=17.50 Aligned_cols=38 Identities=11% Similarity=0.182 Sum_probs=29.5
Q ss_pred HHHHHHHHhhCCceEEEeCC-eeEEEecCHHHHHHHHhh
Q 037456 23 QALTRLSKQHGPVMKLQLGE-LLALVISSPGATQEVLKT 60 (123)
Q Consensus 23 ~~~~~~~~~~g~~~~~~~g~-~~~v~i~~p~~~~~vl~~ 60 (123)
.-+.++..-||+|...|+.- ...|.+.+.+.++.++..
T Consensus 23 ~DI~qlFspfG~I~VsWi~dTSAfV~l~~r~~~~~v~~~ 61 (87)
T PF08675_consen 23 SDIYQLFSPFGQIYVSWINDTSAFVALHNRDQAKVVMNT 61 (87)
T ss_dssp HHHHHHCCCCCCEEEEEECTTEEEEEECCCHHHHHHHHH
T ss_pred hhHHHHhccCCcEEEEEEcCCcEEEEeecHHHHHHHHHH
Confidence 34567777789999999866 467788999999887643
No 37
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=35.94 E-value=55 Score=15.57 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=23.9
Q ss_pred HHHHHhhCCceEEEeC----CeeEEEecCHHHHHHHHh
Q 037456 26 TRLSKQHGPVMKLQLG----ELLALVISSPGATQEVLK 59 (123)
Q Consensus 26 ~~~~~~~g~~~~~~~g----~~~~v~i~~p~~~~~vl~ 59 (123)
.++..+||++..+.+. +.-.|-..+.+.++....
T Consensus 2 ~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~ 39 (56)
T PF13893_consen 2 YKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIE 39 (56)
T ss_dssp HHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHH
T ss_pred hHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHH
Confidence 4677889998877643 334666789999887775
No 38
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=35.60 E-value=1.1e+02 Score=19.42 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=22.7
Q ss_pred HHHHHHHhhCCceEEEe----CCeeEEEecCHHHHHHH
Q 037456 24 ALTRLSKQHGPVMKLQL----GELLALVISSPGATQEV 57 (123)
Q Consensus 24 ~~~~~~~~~g~~~~~~~----g~~~~v~i~~p~~~~~v 57 (123)
-+......||++..+|+ .+..+|-+-||..++..
T Consensus 26 eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DA 63 (195)
T KOG0107|consen 26 ELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDA 63 (195)
T ss_pred HHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHH
Confidence 35667788999888885 33456666666655544
No 39
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=30.16 E-value=1.1e+02 Score=21.13 Aligned_cols=52 Identities=19% Similarity=0.162 Sum_probs=28.7
Q ss_pred CCCCCCcccchhhhcCCChHHHHHHHHHhhC----CceEEEeCCeeEEEecCHHHHH
Q 037456 3 GPKSLPSIGNFHQWAGALPHQALTRLSKQHG----PVMKLQLGELLALVISSPGATQ 55 (123)
Q Consensus 3 gp~~~p~lG~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~g~~~~v~i~~p~~~~ 55 (123)
++.-+|+.|..+.+ .........+..+.|+ +.+.+..|+.+--+..++|.+.
T Consensus 128 ~~Nilpi~Gs~h~V-t~~~lAa~~e~~~~~~p~~rq~vAVlVGg~nk~f~~~~d~a~ 183 (329)
T COG3660 128 GPNILPINGSPHNV-TSQRLAALREAFKHLLPLPRQRVAVLVGGNNKAFVFQEDKAH 183 (329)
T ss_pred CCceeeccCCCCcc-cHHHhhhhHHHHHhhCCCCCceEEEEecCCCCCCccCHHHHH
Confidence 34457777877766 3333444556667774 3455556665544444444433
No 40
>KOG2452 consensus Formyltetrahydrofolate dehydrogenase [Nucleotide transport and metabolism]
Probab=26.05 E-value=2.9e+02 Score=20.79 Aligned_cols=63 Identities=19% Similarity=0.160 Sum_probs=36.7
Q ss_pred ceEEEeCC-eeEEEecCHHHHHHHHhhCcccccCCcCC-CCCccccCchHHHHHHHHHHHHHHhh
Q 037456 35 VMKLQLGE-LLALVISSPGATQEVLKTNEISFAQRHET-FAGQHLVTSAKIKMILVPLVEEILPL 97 (123)
Q Consensus 35 ~~~~~~g~-~~~v~i~~p~~~~~vl~~~~~~~~~~~~~-~~~~~~fs~~~l~~~~~~~~~~~~~~ 97 (123)
-+.+-+|+ .|.+++.|.++-+.+-..-...|-+++.. ....++|-...+.++++..+-+....
T Consensus 648 kvslelgg~sp~iifad~dl~kav~~~~~~vff~kgenciaagr~fi~~sihd~fv~~~vee~~~ 712 (881)
T KOG2452|consen 648 KVSLELGGESPFIIFADCDLNKAVQMGMSSVFFSKGENCIAAGRLFVEDSIHDEFVRRVVEEVRK 712 (881)
T ss_pred eeeeeccCCCceEEEecCcHHHHHHhhccceeecCCcchhhhcceeehhhhhHHHHHHHHHHHHh
Confidence 34555666 68899999999888866554444333322 11116777777766665554444433
No 41
>PF03625 DUF302: Domain of unknown function DUF302 ; InterPro: IPR005180 This domain is found in an undescribed set of proteins. It normally occurs uniquely within a sequence, but is found as a tandem repeat (Q9X8B8 from SWISSPROT). It has an interesting phylogenetic distribution with the majority of examples in bacteria and archaea, but it is also found in Drosophila melanogaster (e.g. Q9VA18 from SWISSPROT). The hypothetical protein TT1751 from Thermus thermophilus has a beta-alpha-beta(4)-alpha structural fold [].; PDB: 1Q9U_A 1J3M_B.
Probab=24.97 E-value=1e+02 Score=15.34 Aligned_cols=21 Identities=19% Similarity=0.290 Sum_probs=14.8
Q ss_pred CeeEEEecCHHHHHHHHhhCc
Q 037456 42 ELLALVISSPGATQEVLKTNE 62 (123)
Q Consensus 42 ~~~~v~i~~p~~~~~vl~~~~ 62 (123)
...++.+++|..+.+++..+.
T Consensus 18 ~~~i~~~cnp~~a~~ll~~~p 38 (65)
T PF03625_consen 18 PYRILEFCNPKIAYQLLKADP 38 (65)
T ss_dssp -EEEEEEE-HHHHHHHHCC-G
T ss_pred CeEEEEECChHHHHHHHHhhH
Confidence 345778999999999997653
No 42
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=24.36 E-value=1.7e+02 Score=17.54 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhCCceEEEeC---------CeeEEEecCHHHHHHHHhh
Q 037456 22 HQALTRLSKQHGPVMKLQLG---------ELLALVISSPGATQEVLKT 60 (123)
Q Consensus 22 ~~~~~~~~~~~g~~~~~~~g---------~~~~v~i~~p~~~~~vl~~ 60 (123)
-+.+.++..+||.+..+.+. +.-+|-..+.+.++.++..
T Consensus 48 e~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~ 95 (144)
T PLN03134 48 DASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95 (144)
T ss_pred HHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 45677888999987765441 2456778899999998864
No 43
>PLN03120 nucleic acid binding protein; Provisional
Probab=23.83 E-value=2.4e+02 Score=19.13 Aligned_cols=57 Identities=7% Similarity=0.212 Sum_probs=37.1
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEe------CCeeEEEecCHHHHHHHHhhCcccccCC
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQL------GELLALVISSPGATQEVLKTNEISFAQR 68 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~------g~~~~v~i~~p~~~~~vl~~~~~~~~~~ 68 (123)
++||+.. .-.-+.+.++...||.|..+.+ .+.-+|.+.+++.++..+.-+...+.++
T Consensus 8 fVgNLs~---~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~AllLnG~~l~gr 70 (260)
T PLN03120 8 KVSNVSL---KATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALLLSGATIVDQ 70 (260)
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHHhcCCeeCCc
Confidence 3456542 2234557788889999887765 2356777889999998876554434333
No 44
>PF14811 TPD: Protein of unknown function TPD sequence-motif
Probab=22.41 E-value=1.1e+02 Score=18.49 Aligned_cols=22 Identities=14% Similarity=0.345 Sum_probs=15.4
Q ss_pred HHHHHHHHHhhCC-ceEEEeCCe
Q 037456 22 HQALTRLSKQHGP-VMKLQLGEL 43 (123)
Q Consensus 22 ~~~~~~~~~~~g~-~~~~~~g~~ 43 (123)
...+....++||| ++.+|+|..
T Consensus 100 ~~Q~~~Y~nrfGpG~VIyw~G~~ 122 (139)
T PF14811_consen 100 KKQFSSYWNRFGPGAVIYWFGFI 122 (139)
T ss_pred HHHHHHHHHHhCCceEEEeccch
Confidence 3456678889996 667777654
No 45
>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.75 E-value=2.1e+02 Score=17.64 Aligned_cols=34 Identities=18% Similarity=0.172 Sum_probs=21.5
Q ss_pred EEEecCHHHHHHHHhhCcccccCCcCCCCCccccCchHHH
Q 037456 45 ALVISSPGATQEVLKTNEISFAQRHETFAGQHLVTSAKIK 84 (123)
Q Consensus 45 ~v~i~~p~~~~~vl~~~~~~~~~~~~~~~~~~~fs~~~l~ 84 (123)
+|+..|--++..++.+.......++ .+|+++++.
T Consensus 69 lVVT~Di~LA~~ll~kg~~v~~prG------r~y~~~nI~ 102 (150)
T COG1671 69 LVVTADIPLASLLLDKGAAVLNPRG------RLYTEENIG 102 (150)
T ss_pred EEEECchHHHHHHHhcCCEEECCCC------cccCHhHHH
Confidence 4555566666666655555555555 788888887
No 46
>PF02639 DUF188: Uncharacterized BCR, YaiI/YqxD family COG1671; InterPro: IPR003791 This entry describes proteins of unknown function.
Probab=20.92 E-value=2e+02 Score=17.10 Aligned_cols=35 Identities=14% Similarity=0.141 Sum_probs=24.4
Q ss_pred eEEEecCHHHHHHHHhhCcccccCCcCCCCCccccCchHHH
Q 037456 44 LALVISSPGATQEVLKTNEISFAQRHETFAGQHLVTSAKIK 84 (123)
Q Consensus 44 ~~v~i~~p~~~~~vl~~~~~~~~~~~~~~~~~~~fs~~~l~ 84 (123)
.+|++.|--++..+|.+.......++ ..||.+++.
T Consensus 53 DiVITqDigLA~~~l~Kga~vl~~rG------~~yt~~nI~ 87 (130)
T PF02639_consen 53 DIVITQDIGLASLLLAKGAYVLNPRG------KEYTKENID 87 (130)
T ss_pred CEEEECCHHHHHHHHHCCCEEECCCC------CCCCHHHHH
Confidence 46667777777777766655555555 677888877
No 47
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=20.69 E-value=3.5e+02 Score=19.78 Aligned_cols=46 Identities=11% Similarity=0.220 Sum_probs=30.9
Q ss_pred HHHHHHHHhhCCceEEEeC------------CeeEEEecCHHHHHHHHhhC-cccccCC
Q 037456 23 QALTRLSKQHGPVMKLQLG------------ELLALVISSPGATQEVLKTN-EISFAQR 68 (123)
Q Consensus 23 ~~~~~~~~~~g~~~~~~~g------------~~~~v~i~~p~~~~~vl~~~-~~~~~~~ 68 (123)
+-+.+.+.+||.+..+.+. +.-+|...+.+.++..+..- ...|.++
T Consensus 434 edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr 492 (509)
T TIGR01642 434 EDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDR 492 (509)
T ss_pred HHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 4567889999998876642 23367778999998887542 2344444
Done!