Query 037456
Match_columns 123
No_of_seqs 137 out of 1676
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 21:31:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037456.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037456hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tbg_A Cytochrome P450 2D6; mo 99.6 1.3E-15 4.5E-20 105.1 8.6 71 1-71 12-82 (479)
2 3nxu_A Cytochrome P450 3A4; al 99.6 1E-14 3.6E-19 100.9 11.7 69 1-70 16-85 (485)
3 3ld6_A Lanosterol 14-alpha dem 99.6 3.6E-15 1.2E-19 102.9 7.3 111 1-112 13-152 (461)
4 3gw9_A Sterol 14alpha-demethyl 99.5 6.1E-14 2.1E-18 96.1 6.5 68 1-69 5-74 (450)
5 3swz_A Steroid 17-alpha-hydrox 99.5 9E-14 3.1E-18 96.6 7.3 71 1-71 10-81 (494)
6 3e6i_A CYPIIE1, P450-J, cytoch 99.5 2E-13 6.8E-18 94.3 8.6 70 1-70 12-81 (476)
7 3i3k_A Lanosterol 14-alpha dem 99.5 1.1E-13 3.8E-18 95.4 7.4 64 1-65 13-77 (461)
8 3pm0_A Cypib1, cytochrome P450 99.4 2.2E-13 7.5E-18 94.7 7.4 70 1-71 11-80 (507)
9 2cib_A Cytochrome P450 51; hem 99.4 8.2E-13 2.8E-17 91.1 10.1 112 1-113 6-143 (455)
10 3s79_A Cytochrome P450 19A1; o 99.4 1.2E-12 4.3E-17 90.9 9.3 67 1-69 47-116 (503)
11 3k9v_A 1,25-dihydroxyvitamin D 99.4 3.3E-12 1.1E-16 88.2 10.9 68 1-69 26-97 (482)
12 3dbg_A Putative cytochrome P45 99.4 9.4E-13 3.2E-17 91.0 5.9 108 1-112 25-160 (467)
13 1po5_A Cytochrome P450 2B4; ox 99.3 3.9E-12 1.3E-16 88.1 8.2 69 1-69 12-80 (476)
14 2ve3_A Putative cytochrome P45 99.3 2.2E-12 7.5E-17 88.8 6.9 110 1-112 14-149 (444)
15 2hi4_A Cytochrome P450 1A2; CY 99.3 8.5E-12 2.9E-16 86.8 9.1 68 1-69 18-85 (495)
16 2fdv_A Cytochrome P450 2A6; CY 99.3 7E-12 2.4E-16 86.8 8.2 69 1-69 12-80 (476)
17 3v8d_A Cholesterol 7-alpha-mon 99.3 8.9E-13 3.1E-17 91.6 3.5 61 1-62 15-76 (491)
18 1r9o_A Cytochrome P450 2C9; mo 99.3 4.9E-12 1.7E-16 87.6 5.5 69 1-69 13-81 (477)
19 3czh_A Cytochrome P450 2R1; vi 99.3 1.8E-11 6.3E-16 84.9 8.0 69 1-69 14-84 (481)
20 3b6h_A Prostacyclin synthase; 99.2 1.1E-11 3.6E-16 86.3 4.9 61 1-62 20-81 (498)
21 2cd8_A Cytochrome P450 monooxy 99.2 9.9E-11 3.4E-15 80.6 7.8 66 1-69 28-94 (436)
22 3n9y_A Cholesterol SIDE-chain 99.1 2.2E-10 7.5E-15 79.3 8.9 67 1-69 11-81 (487)
23 3dax_A Cytochrome P450 7A1; ch 99.1 3.8E-11 1.3E-15 83.2 4.4 61 1-62 15-76 (491)
24 2ij2_A Cytochrome P450 BM3; mo 99.1 2E-10 6.9E-15 79.5 7.9 60 1-60 5-64 (470)
25 3b98_A Prostaglandin I2 syntha 99.1 5.6E-11 1.9E-15 82.1 4.7 61 1-62 20-81 (475)
26 3qz1_A Steroid 21-hydroxylase; 99.1 1.2E-10 4.1E-15 80.8 4.2 65 1-71 31-95 (496)
27 1n97_A CYP175A1; electron tran 99.0 1.1E-10 3.7E-15 79.2 3.4 106 3-113 3-135 (389)
28 1izo_A P450bsbeta, cytochrome 99.0 2.2E-09 7.7E-14 73.2 7.9 106 4-112 5-140 (417)
29 3awm_A Fatty acid alpha-hydrox 98.9 5.2E-09 1.8E-13 71.4 7.4 62 4-68 4-66 (415)
30 1jfb_A Nitric-oxide reductase 98.9 1.7E-08 5.9E-13 68.6 9.3 56 1-61 3-59 (404)
31 3dsk_A Cytochrome P450 74A, ch 98.7 9.1E-09 3.1E-13 71.5 2.5 58 1-58 30-99 (495)
32 3mdm_A Cholesterol 24-hydroxyl 98.6 2.6E-07 9E-12 63.5 9.2 42 19-60 10-51 (456)
33 1ued_A P450 OXYC, P450 monooxy 98.6 8.9E-08 3E-12 65.3 6.5 53 1-60 12-71 (406)
34 2zbx_A Cytochrome P450-SU1; be 98.6 4.1E-07 1.4E-11 62.1 9.3 59 1-61 7-67 (412)
35 3ivy_A Cytochrome P450 CYP125; 98.4 1.7E-06 5.8E-11 59.4 9.4 65 2-69 21-93 (433)
36 3oo3_A OXY protein; cytochrome 98.4 6.1E-07 2.1E-11 60.6 6.4 51 19-71 12-66 (384)
37 4fb2_A P450CIN; heme, monooxyg 98.4 2.7E-06 9.1E-11 57.8 8.6 80 18-99 18-127 (398)
38 3ejb_B Biotin biosynthesis cyt 98.3 8.2E-06 2.8E-10 55.4 10.4 87 19-107 13-131 (404)
39 1z8o_A 6-deoxyerythronolide B 98.3 7.5E-06 2.6E-10 55.7 9.7 48 18-68 13-60 (404)
40 1s1f_A Putative cytochrome P45 98.3 2.2E-06 7.7E-11 58.4 6.8 61 1-68 10-72 (406)
41 3a4g_A Vitamin D hydroxylase; 98.2 1.3E-05 4.3E-10 54.8 9.5 79 18-99 19-130 (411)
42 3abb_A CYP105D6, cytochrome P4 98.2 6.5E-06 2.2E-10 56.1 7.9 43 18-61 23-66 (408)
43 3dan_A Cytochrome P450 74A2; A 98.2 1.4E-06 4.8E-11 60.1 4.4 42 1-42 11-58 (473)
44 3aba_A Cytochrome P450; oxidor 98.1 1.1E-05 3.8E-10 54.9 7.9 48 18-68 18-66 (403)
45 1odo_A Putative cytochrome P45 98.1 1.4E-05 4.7E-10 54.5 8.0 43 18-61 14-56 (408)
46 2zwu_A Camphor 5-monooxygenase 98.1 1.9E-05 6.5E-10 54.0 8.1 65 1-69 13-86 (415)
47 1gwi_A CYP154C1, cytochrome P4 98.1 3.6E-05 1.2E-09 52.5 9.4 43 18-61 16-59 (411)
48 2y5n_A MYCG, P-450-like protei 98.0 1.5E-05 5.2E-10 54.5 6.3 42 19-61 37-79 (417)
49 3lxh_A Cytochrome P450; heme, 97.9 3.9E-05 1.3E-09 52.4 6.8 79 19-99 38-145 (421)
50 2wm5_A CYP124, putative cytoch 97.9 6E-05 2.1E-09 51.8 7.5 48 20-69 45-99 (435)
51 3oft_A Cytochrome P450, CYP101 97.8 4.9E-05 1.7E-09 51.5 6.6 78 18-98 23-128 (396)
52 3tkt_A Cytochrome P450; aromat 97.8 5.5E-05 1.9E-09 52.2 6.6 47 21-69 47-96 (450)
53 2z3t_A Cytochrome P450; monoxy 97.8 0.00018 6.1E-09 49.4 9.0 48 19-69 20-69 (425)
54 3mgx_A Putative P450 monooxyge 97.8 0.00017 5.8E-09 49.4 8.6 90 19-110 37-160 (415)
55 3nc3_A Cytochrome P450 CYPX; c 97.8 6.5E-05 2.2E-09 51.8 6.5 85 20-108 54-165 (441)
56 1cpt_A Cytochrome P450-TERP; o 97.7 1.7E-05 5.9E-10 54.3 3.1 59 9-69 11-74 (428)
57 3tyw_A Putative cytochrome P45 97.7 0.0002 6.8E-09 48.9 8.0 48 18-68 28-76 (417)
58 2xkr_A CYP142, putative cytoch 97.7 0.00033 1.1E-08 47.5 8.8 85 18-107 17-126 (398)
59 2dkk_A Cytochrome P450; CYP158 97.6 0.00012 4E-09 50.1 5.9 40 20-60 28-69 (411)
60 2jjn_A Cytochrome P450 113A1; 97.6 0.00021 7.3E-09 48.6 6.6 73 20-97 29-128 (411)
61 1n40_A P450 MT2, cytochrome P4 97.5 0.00015 5.3E-09 49.1 4.7 43 18-61 15-58 (396)
62 2uuq_A CYP130, cytochrome P450 97.4 0.00042 1.5E-08 47.3 6.5 47 19-69 25-76 (414)
63 2xbk_A PIMD protein; epoxidati 97.4 0.0003 1E-08 48.0 5.4 42 19-61 26-68 (404)
64 2z36_A MOXA, cytochrome P450 t 97.4 0.00033 1.1E-08 47.8 5.3 48 18-68 21-69 (413)
65 3r9b_A Cytochrome P450 164A2; 97.3 0.0011 3.7E-08 45.2 7.2 40 18-61 28-67 (418)
66 3rwl_A Cytochrome P450 alkane 97.2 0.0033 1.1E-07 43.1 9.1 90 19-110 38-165 (426)
67 1q5d_A P450 epoxidase; cytochr 97.2 0.0005 1.7E-08 47.0 5.0 47 18-69 25-71 (419)
68 1io7_A Cytochrome P450 CYP119; 97.1 0.0025 8.4E-08 42.8 7.6 42 22-69 2-43 (368)
69 4dnj_A Putative cytochrome P45 97.1 0.0049 1.7E-07 42.1 8.8 40 19-61 34-73 (412)
70 3buj_A CALO2; heme, iron, meta 96.9 0.00071 2.4E-08 45.8 3.6 38 19-60 13-50 (397)
71 1lfk_A OXYB, P450 monooxygenas 96.8 0.0029 1E-07 42.8 5.6 42 26-69 20-65 (398)
72 2rfb_A Cytochrome P450; heme, 96.5 0.0056 1.9E-07 40.6 5.4 64 30-99 2-90 (343)
73 3b4x_A 367AA long hypothetical 95.9 0.0084 2.9E-07 40.2 3.9 41 22-68 2-42 (367)
74 3p3o_A Cytochrome P450; monoox 95.6 0.011 3.9E-07 40.3 3.6 41 19-62 33-73 (416)
75 2wiy_A XPLA-heme, cytochrome P 94.9 0.03 1E-06 37.9 4.0 86 19-110 20-133 (394)
76 2yjn_B Erycii, DTDP-4-keto-6-d 93.6 0.0098 3.4E-07 40.4 -0.5 56 6-68 42-101 (381)
77 4dxy_A Cytochrome P450, CYP101 93.4 0.39 1.3E-05 32.8 7.1 77 19-98 37-143 (417)
78 2diu_A KIAA0430 protein; struc 83.6 3.7 0.00013 22.2 5.0 50 10-60 14-65 (96)
79 1s79_A Lupus LA protein; RRM, 78.2 6.1 0.00021 21.2 6.3 54 9-65 15-76 (103)
80 1whv_A Poly(A)-specific ribonu 77.1 6.3 0.00021 21.5 4.4 39 21-59 28-67 (100)
81 2nlw_A Eukaryotic translation 75.4 7.4 0.00025 20.8 5.5 58 9-67 19-88 (105)
82 2krb_A Eukaryotic translation 74.7 6.5 0.00022 19.8 6.9 51 9-60 5-66 (81)
83 1iqt_A AUF1, heterogeneous nuc 73.3 6.6 0.00023 19.2 5.1 44 22-65 13-65 (75)
84 2mss_A Protein (musashi1); RNA 60.5 13 0.00046 18.0 5.5 44 22-65 13-65 (75)
85 3lqv_A PRE-mRNA branch site pr 59.0 19 0.00065 19.3 7.1 51 6-59 9-65 (115)
86 1x4c_A Splicing factor, argini 57.6 20 0.00068 19.1 5.9 49 9-60 19-69 (108)
87 2a3j_A U1 small nuclear ribonu 57.5 23 0.00079 19.8 5.5 52 9-60 33-91 (127)
88 2voo_A Lupus LA protein; RNA-b 57.1 28 0.00095 21.0 4.9 47 21-67 122-176 (193)
89 1x4b_A Heterogeneous nuclear r 56.5 21 0.00074 19.1 4.7 42 22-63 41-91 (116)
90 3ctr_A Poly(A)-specific ribonu 55.8 5.6 0.00019 21.8 1.4 40 21-60 18-58 (101)
91 2dh8_A DAZ-associated protein 55.4 21 0.00072 18.7 4.7 54 9-65 20-82 (105)
92 3d2w_A TAR DNA-binding protein 53.8 21 0.00073 18.3 5.3 46 9-57 15-64 (89)
93 2cpi_A CCR4-NOT transcription 53.7 8.1 0.00028 20.8 2.0 34 27-60 37-82 (111)
94 3pgw_S U1-70K; protein-RNA com 53.6 43 0.0015 23.2 5.9 49 9-60 106-163 (437)
95 1x4e_A RNA binding motif, sing 51.0 22 0.00076 17.7 4.6 50 7-59 7-65 (85)
96 3ex7_B RNA-binding protein 8A; 49.2 31 0.001 18.8 5.8 48 9-59 26-82 (126)
97 1whx_A Hypothetical protein ri 49.2 30 0.001 18.6 5.8 49 9-60 14-65 (111)
98 2dnz_A Probable RNA-binding pr 49.0 26 0.00089 17.9 6.6 50 7-59 7-65 (95)
99 4f25_A Polyadenylate-binding p 48.6 31 0.0011 18.6 5.4 49 9-60 9-64 (115)
100 3s7r_A Heterogeneous nuclear r 48.4 25 0.00087 17.6 4.1 54 9-65 15-77 (87)
101 4fxv_A ELAV-like protein 1; RN 46.6 31 0.0011 18.1 5.3 49 9-60 23-80 (99)
102 2cq4_A RNA binding motif prote 45.9 33 0.0011 18.3 4.7 44 22-65 39-91 (114)
103 2cqd_A RNA-binding region cont 45.5 34 0.0012 18.3 6.2 51 9-62 21-80 (116)
104 3s6e_A RNA-binding protein 39; 45.4 37 0.0013 18.6 4.8 68 2-69 4-84 (114)
105 2cpf_A RNA binding motif prote 44.6 32 0.0011 17.7 5.5 49 9-60 9-69 (98)
106 2dnh_A Bruno-like 5, RNA bindi 44.4 34 0.0011 17.9 5.0 48 9-59 19-74 (105)
107 1l3k_A Heterogeneous nuclear r 43.4 48 0.0016 19.3 5.5 54 9-65 17-79 (196)
108 1p27_B RNA-binding protein 8A; 43.4 35 0.0012 17.8 6.2 49 9-60 27-84 (106)
109 1x5u_A Splicing factor 3B subu 43.3 35 0.0012 17.8 6.4 49 9-60 19-76 (105)
110 2rs2_A Musashi-1, RNA-binding 43.1 38 0.0013 18.0 5.8 51 9-62 29-88 (109)
111 2hvz_A Splicing factor, argini 42.2 36 0.0012 17.6 5.9 48 10-60 5-56 (101)
112 1wex_A Hypothetical protein (r 42.1 40 0.0014 18.0 5.5 48 9-59 19-69 (104)
113 2dnm_A SRP46 splicing factor; 41.6 38 0.0013 17.6 4.8 48 9-59 17-73 (103)
114 1x5p_A Negative elongation fac 41.1 37 0.0013 17.4 5.1 39 22-60 27-68 (97)
115 2cq1_A PTB-like protein L; RRM 40.3 42 0.0014 17.8 4.4 48 9-59 19-69 (101)
116 3s8s_A Histone-lysine N-methyl 40.2 44 0.0015 17.9 5.2 49 9-60 10-67 (110)
117 2fy1_A RNA-binding motif prote 40.0 45 0.0015 18.0 5.2 49 9-60 11-67 (116)
118 1rk8_A CG8781-PA, CG8781-PA pr 39.7 54 0.0019 18.9 5.4 49 9-60 76-133 (165)
119 1oo0_B CG8781-PA, drosophila Y 39.4 43 0.0015 17.6 6.2 48 9-59 30-86 (110)
120 2cph_A RNA binding motif prote 38.9 43 0.0015 17.5 6.9 49 9-60 19-77 (107)
121 2jvr_A Nucleolar protein 3; RN 37.9 50 0.0017 17.9 5.6 49 9-60 32-86 (111)
122 2ghp_A U4/U6 snRNA-associated 37.2 78 0.0027 20.0 5.6 56 9-67 45-107 (292)
123 3bs9_A Nucleolysin TIA-1 isofo 37.1 41 0.0014 16.7 4.8 49 9-60 10-67 (87)
124 1wf0_A TDP-43, TAR DNA-binding 36.7 42 0.0014 16.8 3.4 47 9-58 9-59 (88)
125 1sjq_A Polypyrimidine tract-bi 36.7 52 0.0018 17.8 6.3 48 9-59 20-70 (105)
126 2xs2_A Deleted in azoospermia- 36.6 31 0.0011 17.9 2.6 48 9-59 13-68 (102)
127 1wg5_A Heterogeneous nuclear r 36.6 48 0.0016 17.4 5.4 57 9-68 19-84 (104)
128 1x4g_A Nucleolysin TIAR; struc 36.5 49 0.0017 17.4 6.5 49 9-60 29-80 (109)
129 2ku7_A MLL1 PHD3-CYP33 RRM chi 35.3 57 0.002 17.9 6.2 39 22-60 77-124 (140)
130 3beg_B Splicing factor, argini 35.1 54 0.0019 17.6 5.7 49 9-60 20-70 (115)
131 2d9o_A DNAJ (HSP40) homolog, s 35.0 53 0.0018 17.4 6.0 39 22-60 31-73 (100)
132 2dgt_A RNA-binding protein 30; 34.9 47 0.0016 16.8 6.2 49 9-60 14-63 (92)
133 1sjr_A Polypyrimidine tract-bi 34.2 74 0.0025 18.9 5.7 48 10-60 51-103 (164)
134 2jwn_A Embryonic polyadenylate 33.9 58 0.002 17.5 5.1 38 22-59 50-96 (124)
135 2cpz_A CUG triplet repeat RNA- 33.9 56 0.0019 17.3 4.9 49 9-60 29-86 (115)
136 2cqc_A Arginine/serine-rich sp 33.9 49 0.0017 16.7 5.2 49 9-60 19-76 (95)
137 2dnq_A RNA-binding protein 4B; 33.7 49 0.0017 16.6 6.2 48 9-59 12-60 (90)
138 2dgp_A Bruno-like 4, RNA bindi 33.4 54 0.0019 17.0 6.1 48 9-59 17-73 (106)
139 2e5h_A Zinc finger CCHC-type a 33.2 51 0.0017 16.6 6.0 49 9-60 20-77 (94)
140 4f02_A Polyadenylate-binding p 32.9 81 0.0028 18.9 5.1 49 9-60 19-76 (213)
141 2kxn_B Transformer-2 protein h 32.9 65 0.0022 17.8 7.2 49 9-60 50-107 (129)
142 2bz2_A Negative elongation fac 32.9 63 0.0022 17.6 4.8 39 22-60 51-92 (121)
143 2do4_A Squamous cell carcinoma 32.5 55 0.0019 16.8 6.2 49 9-60 21-77 (100)
144 2dgs_A DAZ-associated protein 32.2 55 0.0019 16.8 6.1 54 9-65 14-76 (99)
145 2jvo_A Nucleolar protein 3; nu 32.1 61 0.0021 17.2 5.6 49 9-60 35-84 (108)
146 2dgv_A HnRNP M, heterogeneous 31.8 53 0.0018 16.5 6.3 49 9-60 12-67 (92)
147 3n9u_C Cleavage and polyadenyl 31.5 77 0.0026 18.2 5.7 39 22-60 69-118 (156)
148 2cq0_A Eukaryotic translation 31.0 60 0.002 16.8 3.3 49 9-60 19-76 (103)
149 2d9p_A Polyadenylate-binding p 30.8 60 0.0021 16.8 3.6 49 9-60 19-74 (103)
150 2err_A Ataxin-2-binding protei 30.7 64 0.0022 17.0 3.9 39 22-60 43-88 (109)
151 3zzy_A Polypyrimidine tract-bi 30.7 76 0.0026 17.9 4.6 47 10-59 33-84 (130)
152 1p1t_A Cleavage stimulation fa 30.6 60 0.0021 16.7 5.6 49 9-60 12-69 (104)
153 2jrs_A RNA-binding protein 39; 30.3 66 0.0022 17.0 4.9 48 9-59 30-86 (108)
154 2dis_A Unnamed protein product 30.2 63 0.0022 16.8 6.2 49 9-60 12-71 (109)
155 1h2v_Z 20 kDa nuclear CAP bind 30.1 79 0.0027 17.9 5.4 49 9-60 43-100 (156)
156 1x4f_A Matrin 3; structural ge 29.9 58 0.002 17.8 3.0 49 9-59 29-80 (112)
157 2la4_A Nuclear and cytoplasmic 29.9 62 0.0021 16.6 5.7 49 9-60 31-82 (101)
158 1x5s_A Cold-inducible RNA-bind 29.8 62 0.0021 16.6 5.6 49 9-60 16-73 (102)
159 1nu4_A U1A RNA binding domain; 29.8 60 0.0021 16.5 5.6 52 9-60 12-70 (97)
160 1why_A Hypothetical protein ri 29.4 62 0.0021 16.5 6.8 49 9-60 21-72 (97)
161 2ad9_A Polypyrimidine tract-bi 29.3 77 0.0026 17.5 5.3 48 9-59 35-85 (119)
162 2cq3_A RNA-binding protein 9; 29.3 64 0.0022 16.6 5.6 49 9-60 19-74 (103)
163 2wbr_A GW182, gawky, LD47780P; 29.3 68 0.0023 16.9 6.1 50 7-59 9-61 (89)
164 2dgx_A KIAA0430 protein; RRM d 29.2 64 0.0022 16.5 5.8 51 9-59 13-70 (96)
165 2cpy_A RNA-binding protein 12; 29.1 70 0.0024 17.0 3.7 54 9-65 19-81 (114)
166 2cqb_A Peptidyl-prolyl CIS-tra 28.8 65 0.0022 16.5 4.9 49 9-60 16-73 (102)
167 2dgu_A Heterogeneous nuclear r 28.1 69 0.0024 16.6 5.6 49 9-60 15-64 (103)
168 3ns6_A Eukaryotic translation 28.0 69 0.0024 16.6 5.8 51 9-59 10-72 (100)
169 3mdf_A Peptidyl-prolyl CIS-tra 27.7 61 0.0021 15.9 6.5 48 9-59 11-67 (85)
170 2div_A TRNA selenocysteine ass 27.5 68 0.0023 16.3 5.4 49 9-60 13-71 (99)
171 2cqi_A Nucleolysin TIAR; RNA r 27.4 71 0.0024 16.5 5.6 48 9-59 19-73 (103)
172 3v4m_A Splicing factor U2AF 65 27.4 76 0.0026 16.8 6.1 47 22-68 29-87 (105)
173 2pe8_A Splicing factor 45; RRM 27.3 77 0.0026 16.9 4.3 64 6-69 9-85 (105)
174 1x4d_A Matrin 3; structural ge 27.1 78 0.0027 16.9 5.1 49 9-59 19-70 (102)
175 2cjk_A Nuclear polyadenylated 26.9 90 0.0031 17.5 5.6 46 22-67 101-155 (167)
176 2x1f_A MRNA 3'-END-processing 26.4 72 0.0024 16.2 6.0 48 9-59 6-62 (96)
177 2dnp_A RNA-binding protein 14; 26.3 69 0.0024 16.0 6.5 48 9-59 13-61 (90)
178 2dhg_A TRNA selenocysteine ass 26.3 75 0.0026 16.4 6.1 49 9-60 13-70 (104)
179 2dnr_A Synaptojanin-1; RRM dom 26.2 81 0.0028 16.8 4.6 39 21-59 28-67 (91)
180 2kn4_A Immunoglobulin G-bindin 25.6 97 0.0033 17.4 6.6 48 10-60 75-131 (158)
181 2cqg_A TDP-43, TAR DNA-binding 25.4 78 0.0027 16.3 5.4 49 9-60 19-76 (103)
182 2e5g_A U6 snRNA-specific termi 25.2 75 0.0026 16.1 5.8 50 9-61 12-65 (94)
183 2cpj_A Non-POU domain-containi 25.0 78 0.0027 16.2 3.3 49 9-60 19-70 (99)
184 2xnq_A Nuclear polyadenylated 24.6 81 0.0028 16.2 6.5 49 9-59 26-75 (97)
185 1uaw_A Mouse-musashi-1; RNP-ty 24.6 68 0.0023 15.3 3.8 50 10-62 5-63 (77)
186 3ulh_A THO complex subunit 4; 24.5 83 0.0028 16.3 5.0 49 9-60 33-89 (107)
187 2cpd_A Apobec-1 stimulating pr 24.3 81 0.0028 16.1 6.1 48 9-59 19-69 (99)
188 2dit_A HIV TAT specific factor 23.9 91 0.0031 16.5 4.5 38 23-60 41-83 (112)
189 2ywk_A Putative RNA-binding pr 23.7 81 0.0028 15.9 4.5 48 9-59 20-75 (95)
190 3ucg_A Polyadenylate-binding p 23.4 78 0.0027 15.6 4.8 54 9-65 10-72 (89)
191 2adc_A Polypyrimidine tract-bi 23.3 1.3E+02 0.0045 18.2 7.1 49 9-59 38-90 (229)
192 2cq2_A Hypothetical protein LO 23.3 1E+02 0.0035 16.9 5.7 47 11-60 33-82 (114)
193 2kvi_A Nuclear polyadenylated 22.8 87 0.003 15.9 6.2 50 9-60 14-64 (96)
194 2ytc_A PRE-mRNA-splicing facto 22.7 80 0.0027 15.5 5.5 49 9-60 16-67 (85)
195 3pgw_A U1-A; protein-RNA compl 22.7 1.5E+02 0.005 18.5 5.3 51 9-59 13-70 (282)
196 2khc_A Testis-specific RNP-typ 22.6 97 0.0033 16.4 3.8 39 22-60 54-101 (118)
197 2la6_A RNA-binding protein FUS 22.5 89 0.003 15.9 5.8 48 9-59 17-81 (99)
198 2hgl_A HNRPF protein, heteroge 21.8 1.1E+02 0.0038 17.2 3.3 56 9-67 48-114 (136)
199 2dhx_A Poly (ADP-ribose) polym 21.7 1.1E+02 0.0038 16.7 5.3 34 34-67 39-73 (104)
200 1u6f_A Tcubp1, RNA-binding pro 21.7 1.1E+02 0.0038 16.7 5.1 39 22-60 56-103 (139)
201 2lea_A Serine/arginine-rich sp 21.6 1.1E+02 0.0039 16.9 6.2 49 9-60 51-108 (135)
202 1wf1_A RNA-binding protein RAL 21.6 1E+02 0.0034 16.2 5.5 49 9-59 31-80 (110)
203 1fxl_A Paraneoplastic encephal 21.2 1.2E+02 0.004 16.8 5.3 48 9-59 6-62 (167)
204 2cpx_A Hypothetical protein FL 21.1 1E+02 0.0035 16.2 4.6 49 9-60 29-86 (115)
205 3tyt_A Heterogeneous nuclear r 20.8 1.5E+02 0.0051 17.8 5.4 48 9-59 8-60 (205)
206 2do0_A HnRNP M, heterogeneous 20.6 1.1E+02 0.0036 16.1 4.7 48 9-59 19-74 (114)
207 2qv6_A MJ0145, GTP cyclohydrol 20.5 1.8E+02 0.0063 18.8 4.5 36 23-59 164-202 (268)
208 3tht_A Alkylated DNA repair pr 20.2 2.1E+02 0.007 19.3 6.4 53 7-60 20-75 (345)
209 1whw_A Hypothetical protein ri 20.0 1E+02 0.0035 15.6 6.2 49 9-60 12-69 (99)
No 1
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=99.62 E-value=1.3e-15 Score=105.13 Aligned_cols=71 Identities=30% Similarity=0.418 Sum_probs=64.3
Q ss_pred CCCCCCCCcccchhhhcCCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCcCC
Q 037456 1 PPGPKSLPSIGNFHQWAGALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQRHET 71 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~~~ 71 (123)
||||+++|++||+..+...+.+..+.+|+++||+++++++|+.++|+++||+++++||.++...|++|+..
T Consensus 12 PPGP~~lP~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~i~~vl~~~~~~f~~r~~~ 82 (479)
T 3tbg_A 12 PPGPLPLPGLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPV 82 (479)
T ss_dssp CCCSCCBTTTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEETTEEEEEEEHHHHHHHHHTTTGGGSCBCCCC
T ss_pred CCCCCCcCcccchHhhcCCCHHHHHHHHHHHhCCEEEEEECCeeEEEECCHHHHHHHHHhCChhhcCCCch
Confidence 79999999999999875567888899999999999999999999999999999999999888888877644
No 2
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold, hemoprotein, monoo cytochrome P450 reductase, endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A* 1tqn_A* 3ua1_A* 3tjs_A*
Probab=99.61 E-value=1e-14 Score=100.93 Aligned_cols=69 Identities=26% Similarity=0.327 Sum_probs=61.1
Q ss_pred CCCCCCCCcccchhhhcCCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhC-cccccCCcC
Q 037456 1 PPGPKSLPSIGNFHQWAGALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTN-EISFAQRHE 70 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~-~~~~~~~~~ 70 (123)
+|||+++|++||+..+ .++.+..+.+|+++||+++++++|+.++++++||+++++||.++ ...|.+++.
T Consensus 16 ~PGP~~~PliGn~~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~~f~~r~~ 85 (485)
T 3nxu_A 16 IPGPTPLPFLGNILSY-HKGFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRP 85 (485)
T ss_dssp CCCCCCBTTTBTGGGG-GGCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTTTTTTTCCCCCC
T ss_pred CCCCCCcCeecCcHHh-hcChHHHHHHHHHHcCCeEEEEeCCCCEEEECCHHHHHHHHhccchhhccCCcc
Confidence 6999999999999988 56788889999999999999999999999999999999999876 456766543
No 3
>3ld6_A Lanosterol 14-alpha demethylase; cytochrome P450, ketoconazole, S genomics, structural genomics consortium, SGC; HET: HEM KKK BCD; 2.80A {Homo sapiens} PDB: 3juv_A* 3jus_A*
Probab=99.58 E-value=3.6e-15 Score=102.92 Aligned_cols=111 Identities=16% Similarity=0.188 Sum_probs=81.4
Q ss_pred CCCCCC-CCcccchhhhcCCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCcCC-------C
Q 037456 1 PPGPKS-LPSIGNFHQWAGALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQRHET-------F 72 (123)
Q Consensus 1 ppgp~~-~p~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~~~-------~ 72 (123)
||++++ +|++||+..+ .++++..+.+++++||+++++++++.+.++++||+++++++.++...|.+++.. +
T Consensus 13 PP~~~~~lP~iG~~~~~-~~~~~~~~~~~~~kYG~i~~~~~~~~~~vvv~~~~~i~~il~~~~~~~~~~~~~~~~~~~~~ 91 (461)
T 3ld6_A 13 PPYIFSPIPFLGHAIAF-GKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLTTPVF 91 (461)
T ss_dssp CCBCCCSSTTTBTHHHH-HHCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESHHHHHHHHHHHH
T ss_pred CCCCCCCcCeeeeHHHh-hhCHHHHHHHHHHHhCCEEEEEECCccEEEEeCHHHHHHHHhCCccccCCCcchhhhhhccC
Confidence 455553 8999999988 568899999999999999999999999999999999999998877666665432 2
Q ss_pred CCc------------------cccCchHHH---HHHHHHHHHHHhhhccccccccccchhh
Q 037456 73 AGQ------------------HLVTSAKIK---MILVPLVEEILPLAAGFVITDLYPSLKF 112 (123)
Q Consensus 73 ~~~------------------~~fs~~~l~---~~~~~~~~~~~~~~~~~~~~d~~p~~~~ 112 (123)
|.. ++|+.+.++ ..+.+.+++..+.+......|.+..+..
T Consensus 92 g~~~~~~~~~~~~~~~R~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (461)
T 3ld6_A 92 GKGVAYDVPNPVFLEQKKMLKSGLNIAHFKQHVSIIEKETKEYFESWGESGEKNVFEALSE 152 (461)
T ss_dssp CTTSGGGSCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHGGGGCSEEEEEHHHHHHH
T ss_pred CCccccCCCcHHHHHHHHhccccccHHHHhhhhHHHHHHHHHHHHHHhhcCCccHHHHHHH
Confidence 211 778877776 4455555565555544333455444443
No 4
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme, oxidoreductase, monooxygenase, sterol biosynthesis, lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A {Trypanosoma brucei} PDB: 3tik_A* 3g1q_A* 3p99_A* 2wv2_A* 2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Probab=99.48 E-value=6.1e-14 Score=96.15 Aligned_cols=68 Identities=15% Similarity=0.297 Sum_probs=59.9
Q ss_pred CCCCCC-CCcccchhhhcCCChHHHHHHHHHhhC-CceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCc
Q 037456 1 PPGPKS-LPSIGNFHQWAGALPHQALTRLSKQHG-PVMKLQLGELLALVISSPGATQEVLKTNEISFAQRH 69 (123)
Q Consensus 1 ppgp~~-~p~lG~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~ 69 (123)
||||++ +|++||+..+ ..+++..+.+++++|| +++++++++.+.++++||+++++++.++...|.+++
T Consensus 5 PPg~p~~~P~iG~~~~~-~~~~~~~~~~~~~~yG~~i~~~~~~~~~~vvv~~p~~~~~il~~~~~~~~~~~ 74 (450)
T 3gw9_A 5 PPVYPVTVPILGHIIQF-GKSPLGFMQECKRQLKSGIFTINIVGKRVTIVGDPHEHSRFFLPRNEVLSPRE 74 (450)
T ss_dssp CCBCCCCSTTTBTHHHH-HHCHHHHHHHHHHHHTCSEEEEEETTEEEEEECCGGGTHHHHSSCTTTEESTG
T ss_pred CCCCCCCcchhccHHHH-ccCHHHHHHHHHHHhCCCeEEEEECCEeEEEEeCHHHHHHHHhCChhhccchh
Confidence 788665 9999999888 5678889999999999 999999999999999999999999988766676664
No 5
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=99.48 E-value=9e-14 Score=96.56 Aligned_cols=71 Identities=23% Similarity=0.410 Sum_probs=61.5
Q ss_pred CCCCCCCCcccchhhhcC-CChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCcCC
Q 037456 1 PPGPKSLPSIGNFHQWAG-ALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQRHET 71 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~~~ 71 (123)
||||+++|++||+..+.. ...+..+.+|+++||+++++++|+.++++++||++++++|.++...|++++..
T Consensus 10 PPgP~~lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~~k~il~~~~~~f~~rp~~ 81 (494)
T 3swz_A 10 PKSLLSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDFSGRPQM 81 (494)
T ss_dssp --CCBCCCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTBBCCCC
T ss_pred CCCCCCCCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCCCCEEEECCHHHHHHHHHhCcHhhCCCCCc
Confidence 789999999999988743 35788899999999999999999999999999999999999888888887654
No 6
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=99.47 E-value=2e-13 Score=94.27 Aligned_cols=70 Identities=34% Similarity=0.530 Sum_probs=62.5
Q ss_pred CCCCCCCCcccchhhhcCCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCcC
Q 037456 1 PPGPKSLPSIGNFHQWAGALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQRHE 70 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~~ 70 (123)
||||+++|++||+..+...+++..+.+|+++||+++++++|+.++++++||+++++||.++...|++++.
T Consensus 12 pPgP~~~PliG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~~~~v~~il~~~~~~f~~r~~ 81 (476)
T 3e6i_A 12 PPGPFPLPIIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVGSQRMVVMHGYKAVKEALLDYKDEFSGRGD 81 (476)
T ss_dssp CCCCCCBTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHTSTTTTCEECC
T ss_pred CcCCCCcccccChhhhccccHhHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcchHhhCCCCC
Confidence 7999999999999987456788999999999999999999999999999999999999887667776643
No 7
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein, alternative splicing, cholesterol biosynthesis, endoplasmic reticulum, heme, iron; HET: HEM KLN BCD; 2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Probab=99.47 E-value=1.1e-13 Score=95.37 Aligned_cols=64 Identities=17% Similarity=0.296 Sum_probs=56.8
Q ss_pred CCC-CCCCCcccchhhhcCCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccc
Q 037456 1 PPG-PKSLPSIGNFHQWAGALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISF 65 (123)
Q Consensus 1 ppg-p~~~p~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~ 65 (123)
||| |+++|++||+..+ ..+++..+.+++++||+++++++++.+.++++++++++++|.++...+
T Consensus 13 PPg~P~~lP~iG~l~~~-~~~~~~~~~~~~~~yG~v~~l~l~g~~~vvv~~~~~~~~il~~~~~~~ 77 (461)
T 3i3k_A 13 PPYIFSPIPFLGHAIAF-GKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDL 77 (461)
T ss_dssp CCBCCCSSTTTBTHHHH-HHCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTE
T ss_pred CCCCCCCCCccccHHhh-ccCHHHHHHHHHHHhCCEEEEEecCceEEEEeChHHHHHHHhcccccc
Confidence 788 7799999999888 467888999999999999999999999999999999999998765433
No 8
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=99.44 E-value=2.2e-13 Score=94.69 Aligned_cols=70 Identities=31% Similarity=0.547 Sum_probs=48.0
Q ss_pred CCCCCCCCcccchhhhcCCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCcCC
Q 037456 1 PPGPKSLPSIGNFHQWAGALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQRHET 71 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~~~ 71 (123)
||||+++|++||+..+ ..+++..+.+++++||+++++++|+.++++++||+++++||.++...|++++..
T Consensus 11 pPgP~~~P~iG~~~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~ 80 (507)
T 3pm0_A 11 PPGPFAWPLIGNAAAV-GQAAHLSFARLARRYGDVFQIRLGSCPIVVLNGERAIHQALVQQGSAFADRPSF 80 (507)
T ss_dssp ------------------CCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTSCBCCCC
T ss_pred CcCCCCCCeeCchhhc-CccHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCcc
Confidence 7899999999999888 568889999999999999999999999999999999999998877778877654
No 9
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding, monooxygenase, NADP, oxidoreductase, protein-inhibitor complex; HET: HEM CM6; 1.50A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A* 2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A* 1e9x_A* 1u13_A*
Probab=99.44 E-value=8.2e-13 Score=91.14 Aligned_cols=112 Identities=15% Similarity=0.181 Sum_probs=78.8
Q ss_pred CCC-CCCCCcccchhhhcCCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCcCC------CC
Q 037456 1 PPG-PKSLPSIGNFHQWAGALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQRHET------FA 73 (123)
Q Consensus 1 ppg-p~~~p~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~~~------~~ 73 (123)
||| |+++|++||+..+ ..+++..+.+++++||+++.+++++.+++++++++++++|+.++...|++++.. +|
T Consensus 6 PPg~p~~~P~iG~~~~~-~~~~~~~~~~l~~~yG~v~~~~~~~~~~~vv~~~~~~~~il~~~~~~~~~~~~~~~~~~~~g 84 (455)
T 2cib_A 6 LPRVSGGHDEHGHLEEF-RTDPIGLMQRVRDELGDVGTFQLAGKQVVLLSGSHANEFFFRAGDDDLDQAKAYPFMTPIFG 84 (455)
T ss_dssp CCBCSCCCBTTBTHHHH-TTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEECTTSCGGGHHHHC
T ss_pred CCCCCCCCCCccCHHHH-hhChHHHHHHHHHHcCCEEEEEeCCceEEEECCHHHHHHHHhcCccccCcccchhHHHhhcC
Confidence 687 6789999999887 567888999999999999999999988999999999999997655455554321 11
Q ss_pred Cc----------------cccCchHHH---HHHHHHHHHHHhhhccccccccccchhhc
Q 037456 74 GQ----------------HLVTSAKIK---MILVPLVEEILPLAAGFVITDLYPSLKFL 113 (123)
Q Consensus 74 ~~----------------~~fs~~~l~---~~~~~~~~~~~~~~~~~~~~d~~p~~~~~ 113 (123)
.. ++|+++.++ ..+.+.+++.++.+......|+..++..+
T Consensus 85 ~~~~~~~~~~~~~R~~~~~~f~~~~l~~~~~~i~~~~~~l~~~~~~~~~vd~~~~~~~~ 143 (455)
T 2cib_A 85 EGVVFDASPERRKEMLHNAALRGEQMKGHAATIEDQVRRMIADWGEAGEIDLLDFFAEL 143 (455)
T ss_dssp --------------------CCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEHHHHHHHH
T ss_pred CccccCcHHHHHHHhhhccccCHHHHHHHHHHHHHHHHHHHHHhCCCCcEeHHHHHHHH
Confidence 10 888888777 44555555555554332334555554443
No 10
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo sapiens} PDB: 3eqm_A* 3s7s_A* 4gl5_A* 4gl7_A*
Probab=99.41 E-value=1.2e-12 Score=90.89 Aligned_cols=67 Identities=21% Similarity=0.287 Sum_probs=55.6
Q ss_pred CCCCCCCCcccchhhhcC---CChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCc
Q 037456 1 PPGPKSLPSIGNFHQWAG---ALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQRH 69 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~ 69 (123)
||||+++|++||+..+.. ...+..+.+++++||+++++++|+.+.++++||++++++|+++ .|++++
T Consensus 47 pPGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~il~~~--~~~~r~ 116 (503)
T 3s79_A 47 IPGPGYCMGIGPLISHGRFLWMGIGSACNYYNRVYGEFMRVWISGEETLIISKSSSMFHIMKHN--HYSSRF 116 (503)
T ss_dssp CCSCCCCSSSHHHHHHHHHHHHCHHHHHHHHHHHSCSEEEEESSSSEEEEECCHHHHHHHHHSG--GGCCCC
T ss_pred CCCCCCCceeeehhccccccccchhHHHHHHHHHhCCeEEEEeCCccEEEECCHHHHHHHHhcC--CCCCcc
Confidence 799999999999987622 2345578899999999999999999999999999999999643 455553
No 11
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; mitochondrial cytochrome P450, monotopic membrane protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus norvegicus} PDB: 3k9y_A*
Probab=99.40 E-value=3.3e-12 Score=88.21 Aligned_cols=68 Identities=24% Similarity=0.463 Sum_probs=58.7
Q ss_pred CCCCCCCCcccchhhhc----CCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCc
Q 037456 1 PPGPKSLPSIGNFHQWA----GALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQRH 69 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~ 69 (123)
+|||+++|++||+..+. .++.+..+.+++++||+++++++|+.+.++++||+++++|+.++ ..|.+++
T Consensus 26 ~PGP~~~p~iG~~~~~~~~~~~~~~~~~~~~l~~~YG~i~~~~~g~~~~vvv~dp~~~~~il~~~-~~~~~r~ 97 (482)
T 3k9v_A 26 LPGPTNWPLLGSLLEIFWKGGLKKQHDTLAEYHKKYGQIFRMKLGSFDSVHLGSPSLLEALYRTE-SAHPQRL 97 (482)
T ss_dssp CCCSCCCTTTBTHHHHHHTTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHTC-CSSCCCC
T ss_pred CCCCCCCCccccHHHHhccCCcccHHHHHHHHHHHcCCEEEEccCCCCEEEEcCHHHHHHHHHhc-CCCCCCC
Confidence 69999999999998763 23578889999999999999999999999999999999999874 4566664
No 12
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1, molecular mechanism, heme, iron, metal-binding, monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor A3} PDB: 3el3_A*
Probab=99.36 E-value=9.4e-13 Score=91.00 Aligned_cols=108 Identities=14% Similarity=0.140 Sum_probs=75.2
Q ss_pred CCCCCCCCcccchhhhcCCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCcCC-------CC
Q 037456 1 PPGPKSLPSIGNFHQWAGALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQRHET-------FA 73 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~~~-------~~ 73 (123)
||||+++|++||+..+ ..+++..+.++++ ||+++++++|+.++++++|++++++|+.++ .|..++.. .|
T Consensus 25 pPgP~~~P~iG~~~~~-~~~p~~~~~~l~~-yGpv~~~~~g~~~~~vv~~~~~i~~il~~~--~~~~~~~~~~~~~~~~g 100 (467)
T 3dbg_A 25 PVAGGGVPLLGHGWRL-ARDPLAFMSQLRD-HGDVVRIKLGPKTVYAVTNPELTGALALNP--DYHIAGPLWESLEGLLG 100 (467)
T ss_dssp CEECCCCSTTHHHHHH-HHCHHHHHHHHGG-GCSEEEEEETTEEEEEECSHHHHHHHHHCT--TC---------------
T ss_pred CCCCCCCCcccchHHh-ccCHHHHHHHHHH-hCCEEEEEeCCccEEEECCHHHHHHHHhCc--CcccccchHHHHHHhcC
Confidence 6788899999999988 4678888888887 999999999999999999999999999876 44222211 12
Q ss_pred -Cc-----------------cccCchHHH---HHHHHHHHHHHhhhccccccccccchhh
Q 037456 74 -GQ-----------------HLVTSAKIK---MILVPLVEEILPLAAGFVITDLYPSLKF 112 (123)
Q Consensus 74 -~~-----------------~~fs~~~l~---~~~~~~~~~~~~~~~~~~~~d~~p~~~~ 112 (123)
.. ++|+++.++ ..+.+.+++.++.+......|+...+..
T Consensus 101 ~~~l~~~dg~~h~~~R~~l~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~d~~~~~~~ 160 (467)
T 3dbg_A 101 KEGVATANGPLHRRQRRTIQPAFRLDAIPAYGPIMEEEAHALTERWQPGKTVDATSESFR 160 (467)
T ss_dssp ---------------CGGGHHHHSTTTSTTTHHHHHHHHHHHHHHSCTTSCEEHHHHHHH
T ss_pred CCCcccCCcHHHHHHHHHhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCCcCcHHHHHHH
Confidence 10 778887776 4555666666665543334455444433
No 13
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP LM2, cytochro monooxygenase; HET: HEM; 1.60A {Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A* 2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A* 3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Probab=99.34 E-value=3.9e-12 Score=88.10 Aligned_cols=69 Identities=30% Similarity=0.496 Sum_probs=59.8
Q ss_pred CCCCCCCCcccchhhhcCCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCc
Q 037456 1 PPGPKSLPSIGNFHQWAGALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQRH 69 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~ 69 (123)
||||+++|++||+..+...+++..+.+++++||+++++++|+.+.++++||+++++||.++...|.+++
T Consensus 12 pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~i~~il~~~~~~f~~~~ 80 (476)
T 1po5_A 12 PPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRG 80 (476)
T ss_dssp CCCSCCBTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEEC
T ss_pred CcCCCCCCccccHHhccCCcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCC
Confidence 689999999999988744678889999999999999999999889999999999999976655666543
No 14
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase, metal-binding, heme, iron; HET: HEM REA; 2.10A {Synechocystis SP} PDB: 2ve4_A*
Probab=99.34 E-value=2.2e-12 Score=88.77 Aligned_cols=110 Identities=18% Similarity=0.204 Sum_probs=75.1
Q ss_pred CCCCCCCCcccchhhhcCCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCcCC-----CCC-
Q 037456 1 PPGPKSLPSIGNFHQWAGALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQRHET-----FAG- 74 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~~~-----~~~- 74 (123)
||||+++|++||+..+. .++. .+.+++++||+++++++++.+.+++++|+++++|+.++...|..+... +|.
T Consensus 14 pPgp~~~P~iG~~~~~~-~~~~-~~~~~~~~yg~v~~~~~~g~~~vvv~~~~~~~~il~~~~~~~~~~~~~~~~~~~g~~ 91 (444)
T 2ve3_A 14 PPGDFGLPWLGETLNFL-NDGD-FGKKRQQQFGPIFKTRLFGKNVIFISGALANRFLFTKEQETFQATWPLSTRILLGPN 91 (444)
T ss_dssp CCCCCCBTTTBTHHHHH-HCTT-HHHHHHHHHCSSEEEEETTEEEEEECSHHHHHHHTSSCTTTEEEECCHHHHHHHCTT
T ss_pred CCCCCCCCccccHHHHh-cCcH-HHHHHHHHcCCeEEEeeCCCCEEEEcCHHHHHHHHhCCCcccccchhHHHHHHhCcc
Confidence 78999999999998773 3445 777999999999999988888999999999999998764444422110 121
Q ss_pred c-----------------cccCchHHH---HHHHHHHHHHHhhhccccccccccchhh
Q 037456 75 Q-----------------HLVTSAKIK---MILVPLVEEILPLAAGFVITDLYPSLKF 112 (123)
Q Consensus 75 ~-----------------~~fs~~~l~---~~~~~~~~~~~~~~~~~~~~d~~p~~~~ 112 (123)
. ++|+++.++ ..+.+.+++.++.+......|+.+++..
T Consensus 92 ~l~~~~g~~~~~~R~~~~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~vd~~~~~~~ 149 (444)
T 2ve3_A 92 ALATQMGEIHRSRRKILYQAFLPRTLDSYLPKMDGIVQGYLEQWGKANEVIWYPQLRR 149 (444)
T ss_dssp SGGGCCHHHHHHHHHHHHGGGCHHHHHTTHHHHHHHHHHHHHHHHHSSEEEHHHHHHH
T ss_pred ccccCCchHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhcCCCcEeHHHHHHH
Confidence 1 889988887 3444444444444332223455544443
No 15
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8- benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo sapiens}
Probab=99.32 E-value=8.5e-12 Score=86.82 Aligned_cols=68 Identities=31% Similarity=0.543 Sum_probs=60.0
Q ss_pred CCCCCCCCcccchhhhcCCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCc
Q 037456 1 PPGPKSLPSIGNFHQWAGALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQRH 69 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~ 69 (123)
+|||+++|++||+..+ ..+++..+.+++++||+++++++|+.++++++||+++++|+.++...|++++
T Consensus 18 ~PgP~~~p~~G~~~~~-~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~i~~il~~~~~~f~~r~ 85 (495)
T 2hi4_A 18 PPEPWGWPLLGHVLTL-GKNPHLALSRMSQRYGDVLQIRIGSTPVLVLSRLDTIRQALVRQGDDFKGRP 85 (495)
T ss_dssp CCCCCCBTTTBTHHHH-TTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTGGGSCBCC
T ss_pred CCCCCCCcceeeHHhc-CccHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhcchhhCCCC
Confidence 4899999999999887 5678888999999999999999999999999999999999987666676654
No 16
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing enzyme, coumarin 7-hydroxylase, nicotine oxidase, oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB: 1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A* 2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Probab=99.31 E-value=7e-12 Score=86.84 Aligned_cols=69 Identities=33% Similarity=0.576 Sum_probs=59.7
Q ss_pred CCCCCCCCcccchhhhcCCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCc
Q 037456 1 PPGPKSLPSIGNFHQWAGALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQRH 69 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~ 69 (123)
||||+++|++||+..+...+++..+.+++++||+++++++|+.+.++++||+++++||.++...|++++
T Consensus 12 pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~~~~~~v~v~~~~~i~~il~~~~~~f~~~~ 80 (476)
T 2fdv_A 12 PPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVDQAEEFSGRG 80 (476)
T ss_dssp CCCCCCBTTTBTGGGCCTTBHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEEC
T ss_pred CCCCCCCcccccHhhcCCcchHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcChHhhCCCC
Confidence 689999999999988744678889999999999999999999899999999999999976655666554
No 17
>3v8d_A Cholesterol 7-alpha-monooxygenase; cytochrome, oxidoreductase; HET: HEM 0GV; 1.90A {Homo sapiens} PDB: 3sn5_A* 3dax_A*
Probab=99.31 E-value=8.9e-13 Score=91.56 Aligned_cols=61 Identities=28% Similarity=0.411 Sum_probs=56.2
Q ss_pred CCCCCC-CCcccchhhhcCCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCc
Q 037456 1 PPGPKS-LPSIGNFHQWAGALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNE 62 (123)
Q Consensus 1 ppgp~~-~p~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~ 62 (123)
||||++ +|++||+..+ ..+++..+.+++++||+++++++|+.+++++++|+++++||+++.
T Consensus 15 PPgp~~~lPliG~~~~~-~~~p~~~~~~l~~~yGpv~~~~lg~~~~vvv~~p~~v~~vl~~~~ 76 (491)
T 3v8d_A 15 PPLENGLIPYLGCALQF-GANPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGK 76 (491)
T ss_dssp CCEEEEEESSTTTTGGG-TCCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHSCCT
T ss_pred CCCCCCCcceeccHHHH-hcCHHHHHHHHHHHcCCceEEEECCEEEEEEcCHHHHHHHHhcCC
Confidence 788888 6999999998 678999999999999999999999999999999999999997654
No 18
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme, oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A* 2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Probab=99.27 E-value=4.9e-12 Score=87.55 Aligned_cols=69 Identities=38% Similarity=0.479 Sum_probs=53.8
Q ss_pred CCCCCCCCcccchhhhcCCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCc
Q 037456 1 PPGPKSLPSIGNFHQWAGALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQRH 69 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~ 69 (123)
||||+++|++||+..+...+++..+.+++++||+++++++|+.+.++++||+++++|+.++...|++++
T Consensus 13 pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~il~~~~~~f~~~~ 81 (477)
T 1r9o_A 13 PPGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALIDLGEEFSGRG 81 (477)
T ss_dssp CCCSSSCC-----CCBCHHHHHHHHHHHHHHHCSEEEEESSSCEEEEECSHHHHHHHHTTTTTTTCEEC
T ss_pred CCCCCCCceeccHhhcCCCChHHHHHHHHHHhCCEEEEEECCCcEEEECCHHHHHHHHhcccHhhCCCC
Confidence 689999999999987633467788999999999999999988889999999999999976655666654
No 19
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug metabolism, structural genomics, structural genomics consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens} SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Probab=99.26 E-value=1.8e-11 Score=84.92 Aligned_cols=69 Identities=33% Similarity=0.565 Sum_probs=59.4
Q ss_pred CCCCCCCCcccchhhhcCCC--hHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCc
Q 037456 1 PPGPKSLPSIGNFHQWAGAL--PHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQRH 69 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~ 69 (123)
||||+++|++||+..+.... ++..+.+++++||+++++++|+.++++++||+++++|+.++...|++++
T Consensus 14 pPgP~~~p~~G~~~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~vl~~~~~~f~~~~ 84 (481)
T 3czh_A 14 PPGPPGLPFIGNIYSLAASSELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRP 84 (481)
T ss_dssp CCCCCCBTTTBHHHHHHHCSSCHHHHHHHHHHHHCSEEEEEETTEEEEEEESHHHHHHHHTTTTTTTCBCC
T ss_pred CCCCCCCcccccHhhcCcccCcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhhchHhhCCCC
Confidence 68999999999998773333 7888999999999999999999999999999999999987666676664
No 20
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome P450, endoplasmic reticulum, fatty acid biosynthesis, heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo sapiens} PDB: 2iag_A*
Probab=99.21 E-value=1.1e-11 Score=86.26 Aligned_cols=61 Identities=23% Similarity=0.407 Sum_probs=54.9
Q ss_pred CCCCCC-CCcccchhhhcCCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCc
Q 037456 1 PPGPKS-LPSIGNFHQWAGALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNE 62 (123)
Q Consensus 1 ppgp~~-~p~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~ 62 (123)
||||++ +|++||+..+ ..+++..+.+++++||+++++++|+.++++++||+++++++.++.
T Consensus 20 PPgp~~~~P~iG~~~~~-~~~~~~~~~~l~~kYG~i~~v~lg~~~~vvv~~p~~~~~il~~~~ 81 (498)
T 3b6h_A 20 PPLDLGSIPWLGYALDF-GKDAASFLTRMKEKHGDIFTILVGGRYVTVLLDPHSYDAVVWEPR 81 (498)
T ss_dssp CCEECCSSTTTBTHHHH-HHCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHTCCT
T ss_pred CCCCCCCCcchhhHHHh-ccCHHHHHHHHHHHcCCeEEEEECCeeEEEEcCHHHHHHHHhCcc
Confidence 688887 8999999887 456788999999999999999999999999999999999997654
No 21
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide monooxygenase, antibiotic biosynthesis, heme, iron, metal-binding; HET: HEM PXI; 1.7A {Streptomyces venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A* 2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Probab=99.17 E-value=9.9e-11 Score=80.60 Aligned_cols=66 Identities=17% Similarity=0.247 Sum_probs=49.2
Q ss_pred CCCCCCCCcccchhhhcCCChHHHHHHHHHhhCCceEEEe-CCeeEEEecCHHHHHHHHhhCcccccCCc
Q 037456 1 PPGPKSLPSIGNFHQWAGALPHQALTRLSKQHGPVMKLQL-GELLALVISSPGATQEVLKTNEISFAQRH 69 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-g~~~~v~i~~p~~~~~vl~~~~~~~~~~~ 69 (123)
||||+++|++|++......+++..+.++ ++||+++++++ ++.+.+++++++++++||.++ .|++++
T Consensus 28 ~PGP~~~p~lG~~~~~~~~~p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~ 94 (436)
T 2cd8_A 28 TTASPPVLDLGALGQDFAADPYPTYARL-RAEGPAHRVRTPEGDEVWLVVGYDRARAVLADP--RFSKDW 94 (436)
T ss_dssp ------CCBHHHHHHHHHHCCHHHHHHH-HTTCSEEEEECSSCCEEEEECSHHHHHHHHHCT--TEECCG
T ss_pred CCCCCccccCCCCCcccccChHHHHHHH-HHhCCeeeeccCCCCeEEEEcCHHHHHHHHcCC--CCcccc
Confidence 6899999999998632245778888999 89999999997 777899999999999999865 455543
No 22
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=99.15 E-value=2.2e-10 Score=79.34 Aligned_cols=67 Identities=16% Similarity=0.266 Sum_probs=53.7
Q ss_pred CCCCCCCCcccchhhhc----CCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCc
Q 037456 1 PPGPKSLPSIGNFHQWA----GALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQRH 69 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~ 69 (123)
+|||+..++. +++.+. ....+..+.+++++||+++++++|+.+.|+++||+++++|+.++. .|++++
T Consensus 11 ~PGP~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~kYG~i~~~~~g~~~~vvv~dp~~~~~il~~~~-~f~~r~ 81 (487)
T 3n9y_A 11 IPSPGDNGWL-NLYHFWRETGTHKVHLHHVQNFQKYGPIYREKLGNVESVYVIDPEDVALLFKSEG-PNPERF 81 (487)
T ss_dssp SCCSCSCHHH-HHHHHHHHTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHHTCC-SSCCCC
T ss_pred CCCCCCCChh-hHHHHHhcCCCcchhHHHHHHHHHcCceeeccCCCCCEEEEcCHHHHHHHHHhCC-CCCCCC
Confidence 5888876655 665542 135778899999999999999999999999999999999997653 566654
No 23
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase, structural genomics, structural genomics consortium, SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo sapiens} PDB: 3sn5_A*
Probab=99.13 E-value=3.8e-11 Score=83.21 Aligned_cols=61 Identities=28% Similarity=0.411 Sum_probs=54.1
Q ss_pred CCCCCC-CCcccchhhhcCCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCc
Q 037456 1 PPGPKS-LPSIGNFHQWAGALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNE 62 (123)
Q Consensus 1 ppgp~~-~p~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~ 62 (123)
||||++ +|++||+..+ ..+++..+.+++++||+++++++|+.++++++||+++++|++++.
T Consensus 15 pPgp~~~~P~iG~~~~~-~~~~~~~~~~~~~kyG~i~~~~~g~~~~vvv~dp~~~~~il~~~~ 76 (491)
T 3dax_A 15 PPLENGLIPYLGCALQF-GANPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGK 76 (491)
T ss_dssp CCEEEEEESCTTTTGGG-TCCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGTHHHHSCCT
T ss_pred CCcCCCcccchhhHHHH-hhCHHHHHHHHHHhcCCeEEEEECCeEEEEEcChHHHHHHHcCCc
Confidence 567766 8999999888 567888999999999999999999999999999999999997654
No 24
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A* 1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A* 2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A* 2ij3_A* 2ij4_A* 3hf2_A* ...
Probab=99.13 E-value=2e-10 Score=79.55 Aligned_cols=60 Identities=22% Similarity=0.322 Sum_probs=54.1
Q ss_pred CCCCCCCCcccchhhhcCCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhh
Q 037456 1 PPGPKSLPSIGNFHQWAGALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKT 60 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~ 60 (123)
+|||+++|++||++.+....++..+.+++++||+++++++++.+.+++++++++++|+.+
T Consensus 5 ~PGP~~~p~iG~l~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~~~~~~~il~~ 64 (470)
T 2ij2_A 5 MPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDE 64 (470)
T ss_dssp CCCCCCCGGGTTGGGGCSSCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHTCT
T ss_pred CCCCCCCCccccHHHHhcccchHHHHHHHHHhCCeEEEecCCccEEEECCHHHHHHHHhh
Confidence 689999999999998744567888899999999999999998899999999999999964
No 25
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450 8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio} PDB: 3b99_A*
Probab=99.11 E-value=5.6e-11 Score=82.06 Aligned_cols=61 Identities=25% Similarity=0.443 Sum_probs=54.8
Q ss_pred CCCCCC-CCcccchhhhcCCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCc
Q 037456 1 PPGPKS-LPSIGNFHQWAGALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNE 62 (123)
Q Consensus 1 ppgp~~-~p~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~ 62 (123)
||||++ +|++||+..+ ..+++..+.+++++||+++.+++|+.+++++++++++++++.++.
T Consensus 20 pPgp~~~~P~iG~~~~~-~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~ 81 (475)
T 3b98_A 20 PPLDKGMIPWLGHALEF-GKDAAKFLTRMKEKHGDIFTVRAAGLYITVLLDSNCYDAVLSDVA 81 (475)
T ss_dssp CCEECCSSTTTBTHHHH-HHCHHHHHHHHHHHHCSEEEEEETTEEEEEECCTTTHHHHHTCTT
T ss_pred CCCCCCCcchHHhHHHH-hhCHHHHHHHHHHHhCCeEEEEECCceEEEEeCHHHHHHHHcCcc
Confidence 688887 8999999887 457889999999999999999999999999999999999997654
No 26
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET: HEM 3QZ; 3.00A {Bos taurus}
Probab=99.05 E-value=1.2e-10 Score=80.80 Aligned_cols=65 Identities=26% Similarity=0.361 Sum_probs=53.4
Q ss_pred CCCCCCCCcccchhhhcCCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCcCC
Q 037456 1 PPGPKSLPSIGNFHQWAGALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQRHET 71 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~~~ 71 (123)
||||++ +..+..++++..+.+++++||+++++++|+.+.++++||+++++||.++...|++++..
T Consensus 31 PPGP~~------l~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~~~f~~r~~~ 95 (496)
T 3qz1_A 31 PPLVPG------FLHLLQPNLPIHLLSLTQKLGPVYRLRLGLQEVVVLNSKRTIEEAMIRKWVDFAGRPQI 95 (496)
T ss_dssp CCBCSC------SCTTSSSCHHHHHHHGGGTSCSEEEECSSSSCEEEECSTTHHHHTTTTSCSTTCBCCCC
T ss_pred CcCCcc------ccccCCCcchHHHHHHHHHhCCEEEEEeCCcCEEEECCHHHHHHHHHhCcHhhCCCCCc
Confidence 566654 44443567889999999999999999999999999999999999998877778777544
No 27
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Probab=99.04 E-value=1.1e-10 Score=79.21 Aligned_cols=106 Identities=9% Similarity=0.008 Sum_probs=77.0
Q ss_pred CCCCCCcccchhhhcCCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCc-CC------CCCc
Q 037456 3 GPKSLPSIGNFHQWAGALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQRH-ET------FAGQ 75 (123)
Q Consensus 3 gp~~~p~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~-~~------~~~~ 75 (123)
+++.+|++||+..+ ..+++..+.+++++||++++ ++|+.+.++++||+++++|+.++ .|++++ .. .+..
T Consensus 3 ~~~~~p~iGnl~~~-~~~p~~~~~~l~~~yGpv~~-~~g~~~~vvv~~~~~i~~il~~~--~f~~~~~~~~~~~~~~g~~ 78 (389)
T 1n97_A 3 RLSLREAWPYLKDL-QQDPLAVLLAWGRAHPRLFL-PLPRFPLALIFDPEGVEGALLAE--GTTKATFQYRALSRLTGRG 78 (389)
T ss_dssp ECCHHHHHHHHHHH-HHCHHHHHHHHHHHCSEEEE-CCTTCCEEEECSHHHHHHHHHCT--TEECCSHHHHHHHHHHCSS
T ss_pred ccccccccccHHHH-hhChHHHHHHHHHHcCCeeE-ecCCccEEEECCHHHHHHHHhcC--CCCCChhHHHHHHHHhCCc
Confidence 45668999999887 45788889999999999999 88888899999999999999875 666664 11 1111
Q ss_pred -----------------cccCchHHH---HHHHHHHHHHHhhhccccccccccchhhc
Q 037456 76 -----------------HLVTSAKIK---MILVPLVEEILPLAAGFVITDLYPSLKFL 113 (123)
Q Consensus 76 -----------------~~fs~~~l~---~~~~~~~~~~~~~~~~~~~~d~~p~~~~~ 113 (123)
++|+++.++ ..+.+.+++.++.+. ....|+..++..+
T Consensus 79 l~~~~g~~h~~~R~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~-~~~~dl~~~~~~~ 135 (389)
T 1n97_A 79 LLTDWGESWKEARKALKDPFLPKNVRGYREAMEEEARAFFGEWR-GEERDLDHEMLAL 135 (389)
T ss_dssp TTTCCHHHHHHHHHHHCGGGSHHHHHTTHHHHHHHHHHHHHTCC-SCCEEHHHHHHHH
T ss_pred cccCCcHHHHHHHHHhCcccCHHHHHHHHHHHHHHHHHHHHHcc-CCcCcHHHHHHHH
Confidence 889988887 455666666666553 2334555554443
No 28
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid complex, riken structural genomics/proteomics initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Probab=98.97 E-value=2.2e-09 Score=73.25 Aligned_cols=106 Identities=10% Similarity=0.002 Sum_probs=71.3
Q ss_pred CCCCCcccchhhhcCCChHHHHHHHHHhhC-CceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCcC--------CCCC
Q 037456 4 PKSLPSIGNFHQWAGALPHQALTRLSKQHG-PVMKLQLGELLALVISSPGATQEVLKTNEISFAQRHE--------TFAG 74 (123)
Q Consensus 4 p~~~p~lG~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~~--------~~~~ 74 (123)
||+.|++||+..+ ..+++..+.+++++|| +++++.+++.+.++++++++++.++ +. ..|.+++. .+|.
T Consensus 5 ~Pg~P~lG~~~~~-~~~p~~~~~~l~~~yg~pv~~~~~~g~~~v~v~~~~~~~~l~-~~-~~~~~~~~~~~~~~~~~~g~ 81 (417)
T 1izo_A 5 IPHDKSLDNSLTL-LKEGYLFIKNRTERYNSDLFQARLLGKNFICMTGAEAAKVFY-DT-DRFQRQNALPKRVQKSLFGV 81 (417)
T ss_dssp -CBCCCTTHHHHH-HHHGGGHHHHHHHHTTSSEEEEEETTEEEEEECSHHHHHHHT-CT-TTEECTTCSCHHHHTTTTCT
T ss_pred CCCCCccchHHHH-hhCcHHHHHHHHHHhCCCeEEeecCCccEEEECCHHHHHHHh-cc-cccccccccccchhhhhccc
Confidence 4566999999887 4577888999999998 8999998888899999999998544 32 33443321 1221
Q ss_pred c------------------cccCchHHH---HHHHHHHHHHHhhhccccccccccchhh
Q 037456 75 Q------------------HLVTSAKIK---MILVPLVEEILPLAAGFVITDLYPSLKF 112 (123)
Q Consensus 75 ~------------------~~fs~~~l~---~~~~~~~~~~~~~~~~~~~~d~~p~~~~ 112 (123)
. ++|+++.++ ..+.+.+++.++.+......|+...+..
T Consensus 82 ~~l~~~dg~~h~~~R~~~~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~dl~~~~~~ 140 (417)
T 1izo_A 82 NAIQGMDGSAHIHRKMLFLSLMTPPHQKRLAELMTEEWKAAVTRWEKADEVVLFEEAKE 140 (417)
T ss_dssp TCGGGCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHTTSSEEEHHHHHHH
T ss_pred cceeecCChHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCeeHHHHHHH
Confidence 1 889888887 4455555555555543333455544443
No 29
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase, oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas paucimobilis} PDB: 3awq_A* 3awp_A*
Probab=98.89 E-value=5.2e-09 Score=71.41 Aligned_cols=62 Identities=8% Similarity=0.044 Sum_probs=46.3
Q ss_pred CCCCCcccchhhhcCCChHHHHHHHHHhh-CCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCC
Q 037456 4 PKSLPSIGNFHQWAGALPHQALTRLSKQH-GPVMKLQLGELLALVISSPGATQEVLKTNEISFAQR 68 (123)
Q Consensus 4 p~~~p~lG~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~ 68 (123)
||+.|++||+..+ ..+++..+.+++++| |+++++.+++.+.+++++++.++ ++.+. ..|+++
T Consensus 4 pPg~P~iG~~~~~-~~~p~~~~~~l~~~y~gpv~~~~~~g~~~~vv~~~~~~~-~l~~~-~~f~~~ 66 (415)
T 3awm_A 4 TPHTKGPDETLSL-LADPYRFISRQCQRLGANAFESRFLLKKTNCLKGAKAAE-IFYDT-TRFERE 66 (415)
T ss_dssp -----CCCCHHHH-HHSTTTHHHHHHHHHTSSEEEEEETTEEEEEEESHHHHH-HHTCT-TTEECT
T ss_pred CCCCCccchHHHH-HhChHHHHHHHHHHhCCCeEEEecCCCcEEEEeCHHHHH-HHhcc-cccccc
Confidence 3445899999887 457788899999999 79999988888899999999986 77544 345443
No 30
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR, atomic resolutio structural genomics/proteomics initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum} SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A* 1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A* 1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Probab=98.87 E-value=1.7e-08 Score=68.59 Aligned_cols=56 Identities=20% Similarity=0.236 Sum_probs=42.3
Q ss_pred CCCCCCCCcccchhhhcCCChHHHHHHHHHhhCCceEEEeC-CeeEEEecCHHHHHHHHhhC
Q 037456 1 PPGPKSLPSIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG-ELLALVISSPGATQEVLKTN 61 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g-~~~~v~i~~p~~~~~vl~~~ 61 (123)
||||+++|++|++.. +++..+.++. +||+++++.++ +...+++++++.++++|.++
T Consensus 3 pPGp~~~P~~g~~~~----~p~~~~~~l~-~~Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~ 59 (404)
T 1jfb_A 3 ASGAPSFPFSRASGP----EPPAEFAKLR-ATNPVSQVKLFDGSLAWLVTKHKDVCFVATSE 59 (404)
T ss_dssp ---CCBSSCCCSSTT----SCCTHHHHHH-HHCSEEEEECTTSCEEEEECSHHHHHHHHHCT
T ss_pred CCCCCCCCCCCCcCC----CccHHHHHHH-HhCCeeeeecCCCCceEEEecHHHHHHHHcCC
Confidence 799999999999753 5666777775 59999988763 44566689999999999865
No 31
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid biosynthesis, heme, iron, synthesis, lyase, metal-binding, oxylipin biosynthesis; HET: HEM T25; 1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A* 3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Probab=98.65 E-value=9.1e-09 Score=71.47 Aligned_cols=58 Identities=10% Similarity=0.137 Sum_probs=47.0
Q ss_pred CCCCCCCCcccchhhhc----CCChHHHHHHHHHhhCC-ceEEEeCCeeE-------EEecCHHHHHHHH
Q 037456 1 PPGPKSLPSIGNFHQWA----GALPHQALTRLSKQHGP-VMKLQLGELLA-------LVISSPGATQEVL 58 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~----~~~~~~~~~~~~~~~g~-~~~~~~g~~~~-------v~i~~p~~~~~vl 58 (123)
||||.++|++|++..+. ..++..++.+++++||+ ++++++++.++ +++.+++..+.++
T Consensus 30 pPGp~g~P~iG~~~~~~~~~~~~~~~~f~~~~~~kyG~~Vf~~~l~~~~~vv~~p~~v~~~~~~~~~~l~ 99 (495)
T 3dsk_A 30 IPGNYGLPIVGPIKDRWDYFYDQGAEEFFKSRIRKYNSTVYRVNMPPGAFIAENPQVVALLDGKSFPVLF 99 (495)
T ss_dssp CCCCCCSTTHHHHHHHHHHHTTSCHHHHHHHHHHHHTCSEEEEECSCCTTTCSCCEEEEECSTTTGGGGG
T ss_pred CCCCCCCCccchHHHHHHHHHhcCcHHHHHHHHHHhCCceEeecCCCCCCccCCCCEEEEeCCcceeeec
Confidence 78999999999997763 46788999999999999 99999987766 5566766655444
No 32
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide, monooxygenase, metab enzyme, oxidoreductase, heme, cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A* 4enh_A* 4fia_A*
Probab=98.63 E-value=2.6e-07 Score=63.46 Aligned_cols=42 Identities=17% Similarity=0.398 Sum_probs=38.6
Q ss_pred CChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhh
Q 037456 19 ALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKT 60 (123)
Q Consensus 19 ~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~ 60 (123)
+.++..+.+|+++||+++++++|+.+.++++||+++++||.+
T Consensus 10 ~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~p~~~~~il~~ 51 (456)
T 3mdm_A 10 RVLQDVFLDWAKKYGPVVRVNVFHKTSVIVTSPESVKKFLMS 51 (456)
T ss_dssp CCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTC
T ss_pred chHHHHHHHHHHHhCCeEEEEeCCCCEEEECCHHHHHHHHhh
Confidence 457788999999999999999999999999999999999964
No 33
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A {Amycolatopsis orientalis} SCOP: a.104.1.1
Probab=98.62 E-value=8.9e-08 Score=65.29 Aligned_cols=53 Identities=15% Similarity=0.203 Sum_probs=44.6
Q ss_pred CCCCCCCCcccchhhhcCCChHHHHHHHHHhhCCceEEE----e-CC-eeEEEecCHHHHHHHH-hh
Q 037456 1 PPGPKSLPSIGNFHQWAGALPHQALTRLSKQHGPVMKLQ----L-GE-LLALVISSPGATQEVL-KT 60 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~-g~-~~~v~i~~p~~~~~vl-~~ 60 (123)
||||+++|+. + ..+++..+.++ ++||++++++ + ++ .+++++++++++++|| .+
T Consensus 12 ppgp~~~p~~-----~-~~~p~~~~~~l-~~yGpv~~~~~~~~~~~~~~~~vvv~~~~~i~~vl~~~ 71 (406)
T 1ued_A 12 LREPANFQLR-----T-NCDPHEDNFGL-RAHGPLVRIVGESSTQLGRDFVWQAHGYEVVRRILGDH 71 (406)
T ss_dssp EECCTTTTCE-----E-TTEECHHHHHH-HTTCSEEEEESHHHHHTTSSCEEEECSHHHHHHHHHCC
T ss_pred cccCcccCCC-----C-CCCcHHHHHHH-HHhCCeeeecccccCCCCCccEEEEcCHHHHHHHHhhC
Confidence 5778888876 2 45677888899 9999999999 6 77 8899999999999999 54
No 34
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.50A {Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A* 3cv9_A*
Probab=98.59 E-value=4.1e-07 Score=62.13 Aligned_cols=59 Identities=17% Similarity=0.284 Sum_probs=45.5
Q ss_pred CCCCCCCCcccchhhhcCCChHHHHHHHHHhh-CCceEEEe-CCeeEEEecCHHHHHHHHhhC
Q 037456 1 PPGPKSLPSIGNFHQWAGALPHQALTRLSKQH-GPVMKLQL-GELLALVISSPGATQEVLKTN 61 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~-g~~~~v~i~~p~~~~~vl~~~ 61 (123)
||+|++.|.+..-..+ ..+++..+.++ ++| |+++++++ |+.+.+++++++++++||.++
T Consensus 7 ~~~~~~~P~~~~~~~~-~~~p~~~~~~l-~~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~ 67 (412)
T 2zbx_A 7 TPQTTDAPAFPSNRSC-PYQLPDGYAQL-RDTPGPLHRVTLYDGRQAWVVTKHEAARKLLGDP 67 (412)
T ss_dssp -CCCCSSCBSSCCCSS-TTSCCHHHHHH-HHSSSSEEEEECTTSCEEEEECSHHHHHHHHTCT
T ss_pred CCCCCCCCCCCCCchh-ccChHHHHHHH-HhcCCCeEeeccCCCCcEEEEecHHHHHHHHcCc
Confidence 5677777765222223 45678888999 788 99999997 788899999999999999764
No 35
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron, metal-binding, oxidoreductase; HET: HEM; 1.35A {Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A* 3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Probab=98.45 E-value=1.7e-06 Score=59.45 Aligned_cols=65 Identities=12% Similarity=0.083 Sum_probs=46.1
Q ss_pred CCCCCCCcccchhhhcCCChHHHHHHHHHhhCCceEEE--------eCCeeEEEecCHHHHHHHHhhCcccccCCc
Q 037456 2 PGPKSLPSIGNFHQWAGALPHQALTRLSKQHGPVMKLQ--------LGELLALVISSPGATQEVLKTNEISFAQRH 69 (123)
Q Consensus 2 pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~--------~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~ 69 (123)
+.+.+.+++...... ..+++..+.++ ++|||++++. +|..+.+++++++.+++||++. ..|++++
T Consensus 21 ~~~~~~~~~~~~~~~-~~~p~~~~~~l-r~~gPv~~~~~~~g~~~~lG~~~~~vv~~~~~v~~vl~~~-~~fs~~~ 93 (433)
T 3ivy_A 21 NLPPGFDFTDPAIYA-ERLPVAEFAEL-RSAAPIWWNGQDPGKGGGFHDGGFWAITKLNDVKEISRHS-DVFSSYE 93 (433)
T ss_dssp CCCTTCCTTCHHHHT-TCCCHHHHHHH-HHHCSEEEEECCTTCSTTCCSSEEEEECSHHHHHHHHHCT-TTEESTT
T ss_pred CCCCCCCCCCHHHhh-cCCccHHHHHH-HhcCCEEecccccccccccCCCCEEEEecHHHHHHHHcCh-hhccCCc
Confidence 344445555444332 34688888888 7899999998 4557889999999999999754 4566554
No 36
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes teichomyceticus} SCOP: a.104.1.0 PDB: 3o1a_A*
Probab=98.41 E-value=6.1e-07 Score=60.57 Aligned_cols=51 Identities=12% Similarity=0.236 Sum_probs=40.3
Q ss_pred CChHHHHHHHHHhhCCceEEEeCC----eeEEEecCHHHHHHHHhhCcccccCCcCC
Q 037456 19 ALPHQALTRLSKQHGPVMKLQLGE----LLALVISSPGATQEVLKTNEISFAQRHET 71 (123)
Q Consensus 19 ~~~~~~~~~~~~~~g~~~~~~~g~----~~~v~i~~p~~~~~vl~~~~~~~~~~~~~ 71 (123)
.+++..+.++ ++||+++++++++ .+++++++++++++||++ ...|++++..
T Consensus 12 ~~p~~~~~~l-r~yGpv~~~~~~~~~~g~~~vvv~~~~~v~~vl~~-~~~f~~~~~~ 66 (384)
T 3oo3_A 12 LDPVPEFEEL-QKAGPLHEYDTEPGMDGRKQWLVTGHDEVRAILAD-HERFSSMRPV 66 (384)
T ss_dssp TEECHHHHHH-HHTCSEECCCCC------CEEEECCHHHHHHHHHC-TTTEECSCCC
T ss_pred cChhHHHHHH-HhcCCeeecccccccCCCCEEEEcCHHHHHHHHhC-chhccCCccc
Confidence 5678888888 5899999998876 789999999999999954 4567776543
No 37
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM EDO; 1.37A {Citrobacter braakii} PDB: 4fmx_A* 4fyz_A* 1t2b_A* 3bdz_A* 3be0_A*
Probab=98.36 E-value=2.7e-06 Score=57.79 Aligned_cols=80 Identities=14% Similarity=0.155 Sum_probs=59.1
Q ss_pred CCChHHHHHHHHHhh--CCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCcCCCC----------------Cc----
Q 037456 18 GALPHQALTRLSKQH--GPVMKLQLGELLALVISSPGATQEVLKTNEISFAQRHETFA----------------GQ---- 75 (123)
Q Consensus 18 ~~~~~~~~~~~~~~~--g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~~~~~----------------~~---- 75 (123)
..+++..+.+++++| |+++++..++ +.+++++++.+++|+++ ...|++++.... ..
T Consensus 18 ~~~p~~~~~~l~~~Y~~Gpv~~~~~~~-~~~vv~~~~~v~~vl~~-~~~f~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 95 (398)
T 4fb2_A 18 DGTPHAFFEALRDEAETTPIGWSEAYG-GHWVVAGYKEIQAVIQN-TKAFSNKGVTFPRYETGEFELMMAGQDDPVHKKY 95 (398)
T ss_dssp TSSSHHHHHHHHHHHTTCSEEEECGGG-CEEEECSHHHHHHHHTC-CSSEEGGGCSSSCC----CCCTTTTCCTTHHHHH
T ss_pred hcChhHHHHHHHhcCCCCCeEEecCCC-CEEEEccHHHHHHHHhC-hhhccCCcccccCCCCcccccCcccCCchHHHHH
Confidence 457899999999999 9999998875 58889999999999954 456666653310 00
Q ss_pred -----cccCchHHH---HHHHHHHHHHHhhhc
Q 037456 76 -----HLVTSAKIK---MILVPLVEEILPLAA 99 (123)
Q Consensus 76 -----~~fs~~~l~---~~~~~~~~~~~~~~~ 99 (123)
++|+++.++ ..+.+.+++.++.+.
T Consensus 96 R~~~~~~f~~~~l~~~~~~i~~~~~~l~~~l~ 127 (398)
T 4fb2_A 96 RQLVAKPFSPEATDLFTEQLRQSTNDLIDARI 127 (398)
T ss_dssp HHHHHTTTCHHHHHTTHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 889998887 555566666665544
No 38
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus subtilis} SCOP: a.104.1.0 PDB: 3ejd_B* 3eje_B*
Probab=98.33 E-value=8.2e-06 Score=55.40 Aligned_cols=87 Identities=13% Similarity=0.074 Sum_probs=61.9
Q ss_pred CChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCcCC--------------------CCCc---
Q 037456 19 ALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQRHET--------------------FAGQ--- 75 (123)
Q Consensus 19 ~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~~~--------------------~~~~--- 75 (123)
.+++..+.++ ++||+++++.+++.+.+++++++.++++|.+. ..|++++.. .|..
T Consensus 13 ~~p~~~~~~~-r~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~h~~ 90 (404)
T 3ejb_B 13 KNPYSFYDTL-RAVHPIYKGSFLKYPGWYVTGYEETAAILKDA-RFKVRTPLPESSTKYQDLSHVQNQMMLFQNQPDHRR 90 (404)
T ss_dssp HCHHHHHHHH-HHHCSEEEEEETTEEEEEECCHHHHHHHHHCT-TEECCCSSCTTCCTTHHHHHHHHTSGGGCCTTHHHH
T ss_pred cCchHHHHHH-HhhCCEeeccCCCCCEEEEecHHHHHHHHhCc-ccccCcccccccccccchhhhhhcchhhcCCchHHH
Confidence 4677788777 57999999999999999999999999999876 567666531 1111
Q ss_pred ------cccCchHHH---HHHHHHHHHHHhhhccccccccc
Q 037456 76 ------HLVTSAKIK---MILVPLVEEILPLAAGFVITDLY 107 (123)
Q Consensus 76 ------~~fs~~~l~---~~~~~~~~~~~~~~~~~~~~d~~ 107 (123)
++|+++.++ ..+.+.+++.++.+......|+.
T Consensus 91 ~Rr~~~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~~~d~~ 131 (404)
T 3ejb_B 91 LRTLASGAFTPRTTESYQPYIIETVHHLLDQVQGKKKMEVI 131 (404)
T ss_dssp HHHHHHGGGSHHHHHTTHHHHHHHHHHHHHTTTTTSEEEHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhhhcCCcchH
Confidence 899998888 44555556666555433333443
No 39
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin, oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A* 1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Probab=98.30 E-value=7.5e-06 Score=55.71 Aligned_cols=48 Identities=10% Similarity=0.107 Sum_probs=41.1
Q ss_pred CCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCC
Q 037456 18 GALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQR 68 (123)
Q Consensus 18 ~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~ 68 (123)
..+++..+.++ ++||+++++++++.+.+++++++++++||.++ .|+++
T Consensus 13 ~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~ 60 (404)
T 1z8o_A 13 HVDWYRTYAEL-RETAPVTPVRFLGQDAWLVTGYDEAKAALSDL--RLSSD 60 (404)
T ss_dssp TSSHHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHHCT--TEECC
T ss_pred ccCcHHHHHHH-HhcCCeeeecCCCceEEEEcCHHHHHHHHcCC--Ccccc
Confidence 45788889999 89999999999888899999999999999865 35444
No 40
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2, anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A {Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A* 2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Probab=98.28 E-value=2.2e-06 Score=58.36 Aligned_cols=61 Identities=21% Similarity=0.305 Sum_probs=45.6
Q ss_pred CCCCCCCCcccchhhhcCCChHHHHHHHHHhhCCceEEEe-CCee-EEEecCHHHHHHHHhhCcccccCC
Q 037456 1 PPGPKSLPSIGNFHQWAGALPHQALTRLSKQHGPVMKLQL-GELL-ALVISSPGATQEVLKTNEISFAQR 68 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-g~~~-~v~i~~p~~~~~vl~~~~~~~~~~ 68 (123)
+|+++.+|+.++. ..+++..+.++. +||+++++.+ ++.+ .+++++++++++||.+ ..|.++
T Consensus 10 ~~~~~~~p~~~~~----~~~p~~~~~~l~-~~Gpv~~~~~~~g~~p~~vv~~~~~v~~vl~~--~~f~~~ 72 (406)
T 1s1f_A 10 VPPVRDWPAVDLP----GSDFDPVLTELM-REGPVTRISLPNGEGWAWLVTRHDDVRLVTND--PRFGRE 72 (406)
T ss_dssp SCCEEECCCCCCC----TTCCCHHHHHHH-HHCSEEEEECSBSBSCEEEECSHHHHHHHHTC--TTEEST
T ss_pred ccCCCCCCCCccc----ccCchHHHHHHH-hcCCeeeeccCCCcccEEEEcCHHHHHHHHcC--CCccCC
Confidence 3566667777772 456777787775 7999999985 5555 8999999999999975 345554
No 41
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox oxidoreductase; HET: HEM; 1.75A {Pseudonocardia autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Probab=98.22 E-value=1.3e-05 Score=54.80 Aligned_cols=79 Identities=15% Similarity=0.192 Sum_probs=57.7
Q ss_pred CCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCcCC-------------CCCc---------
Q 037456 18 GALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQRHET-------------FAGQ--------- 75 (123)
Q Consensus 18 ~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~~~-------------~~~~--------- 75 (123)
..+++..+.++ ++||+++++++++.+.+++++++++++||.++. |++++.. .+..
T Consensus 19 ~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~~--f~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~h 95 (411)
T 3a4g_A 19 WQNPHPAYAAL-RAEDPVRKLALPDGPVWLLTRYADVREAFVDPR--LSKDWRHTLPEDQRADMPATPTPMMILMDPPDH 95 (411)
T ss_dssp TTCCHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHTCTT--EESCGGGGSCGGGCTTCCSCSSCCGGGCCTTHH
T ss_pred hcCchHHHHHH-HhcCCeeeccCCCCCEEEEecHHHHHHHHhCCC--cccccccccccccccccCcccccccccCCchHH
Confidence 45788889999 899999999998889999999999999997652 5554311 1111
Q ss_pred --------cccCchHHH---HHHHHHHHHHHhhhc
Q 037456 76 --------HLVTSAKIK---MILVPLVEEILPLAA 99 (123)
Q Consensus 76 --------~~fs~~~l~---~~~~~~~~~~~~~~~ 99 (123)
+.|+++.++ ..+.+.+++.++.+.
T Consensus 96 ~~~R~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~ 130 (411)
T 3a4g_A 96 TRLRKLVGRSFTVRRMNELEPRITEIADGLLAGLP 130 (411)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhhhhhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889888877 445555555555543
No 42
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding; HET: HEM; 2.30A {Streptomyces avermitilis}
Probab=98.21 E-value=6.5e-06 Score=56.07 Aligned_cols=43 Identities=16% Similarity=0.226 Sum_probs=37.8
Q ss_pred CCChHHHHHHHHHhhCCceEEEe-CCeeEEEecCHHHHHHHHhhC
Q 037456 18 GALPHQALTRLSKQHGPVMKLQL-GELLALVISSPGATQEVLKTN 61 (123)
Q Consensus 18 ~~~~~~~~~~~~~~~g~~~~~~~-g~~~~v~i~~p~~~~~vl~~~ 61 (123)
..+++..+.++ ++||+++++++ |+.+.+++++++++++||.++
T Consensus 23 ~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~ 66 (408)
T 3abb_A 23 PYQPPKAYEER-RGESPLTQVTLFDGRPAWLITGHAEGRALLVDP 66 (408)
T ss_dssp TTSCCHHHHHH-CCSSSEEEEECTTSCEEEEECCHHHHHHHHTCT
T ss_pred ccCchHHHHHH-HhcCCeeeeecCCCCcEEEEeCHHHHHHHHcCC
Confidence 45678888999 89999999997 788899999999999999764
No 43
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty acid biosynthesis, heme, iron, lipid synthesis, lyase, metal-binding; HET: HEM; 1.80A {Parthenium argentatum} PDB: 3dam_A* 3dbm_A*
Probab=98.20 E-value=1.4e-06 Score=60.07 Aligned_cols=42 Identities=12% Similarity=0.197 Sum_probs=35.3
Q ss_pred CCCCCCCCcccchhhhc----CC-ChHHHHHHHHHhhCC-ceEEEeCC
Q 037456 1 PPGPKSLPSIGNFHQWA----GA-LPHQALTRLSKQHGP-VMKLQLGE 42 (123)
Q Consensus 1 ppgp~~~p~lG~~~~~~----~~-~~~~~~~~~~~~~g~-~~~~~~g~ 42 (123)
+|||.++|++|++..+. .. +++.++.++.++||+ ++++++++
T Consensus 11 iPGp~g~P~iG~~~~~~~~~~~~g~~~~~~~~~~~kyG~~vf~~~~~~ 58 (473)
T 3dan_A 11 IPGSYGIPFFQPIKDRLEYFYGTGGRDEYFRSRMQKYQSTVFRANMPP 58 (473)
T ss_dssp CCCCCCSTTHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSEEEEECTT
T ss_pred CCCCCCCcchhhHHHHHHHHHhhcCchHHHHhHHHHhCCeEEEecCCC
Confidence 58999999999997642 34 678899999999999 99999863
No 44
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding, oxidoreductase-antibiotic complex; HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB: 3e5j_A* 3e5k_A* 3e5l_A*
Probab=98.15 E-value=1.1e-05 Score=54.90 Aligned_cols=48 Identities=17% Similarity=0.353 Sum_probs=39.4
Q ss_pred CCChHHHHHHHHHhhCCceEEEe-CCeeEEEecCHHHHHHHHhhCcccccCC
Q 037456 18 GALPHQALTRLSKQHGPVMKLQL-GELLALVISSPGATQEVLKTNEISFAQR 68 (123)
Q Consensus 18 ~~~~~~~~~~~~~~~g~~~~~~~-g~~~~v~i~~p~~~~~vl~~~~~~~~~~ 68 (123)
..+++..+.++ ++||+++++++ |+.+.+++++++++++||.++ .|+++
T Consensus 18 ~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~ 66 (403)
T 3aba_A 18 PFLPPDGIADI-RAAAPVTRATFTSGHEAWLVTGYEEVRALLRDS--SFSVQ 66 (403)
T ss_dssp TTSCCTTHHHH-HHHCSEEEEECTTSCEEEEECCHHHHHHHHHCT--TEESC
T ss_pred ccChhHHHHHH-HhcCCeeeeccCCCceEEEEcCHHHHHHHHcCC--Ccccc
Confidence 34667778888 88999999997 788899999999999999864 35554
No 45
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase; HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=98.12 E-value=1.4e-05 Score=54.46 Aligned_cols=43 Identities=23% Similarity=0.343 Sum_probs=38.5
Q ss_pred CCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhC
Q 037456 18 GALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTN 61 (123)
Q Consensus 18 ~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~ 61 (123)
..+++..+.++ ++||+++++++++.+.+++++++++++||.++
T Consensus 14 ~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~ 56 (408)
T 1odo_A 14 GADHHTEHRTL-REGGPATWVDVLGVQAWSVSDPVLLKQLLTSS 56 (408)
T ss_dssp CTTHHHHHHHH-HTTCSEEEEEETTEEEEEECCHHHHHHHTTCT
T ss_pred cCChHHHHHHH-HHhCCeEEeccCCCCEEEECCHHHHHHHHcCC
Confidence 46788889999 99999999998888899999999999999754
No 46
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron, metal-binding, oxidoreductase, substrate-soaking, cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB: 1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A* 2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A* 1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Probab=98.08 E-value=1.9e-05 Score=54.03 Aligned_cols=65 Identities=15% Similarity=0.187 Sum_probs=46.9
Q ss_pred CCCCCCCCcc--cchhhh----cCCChHHHHHHHHHhhC--CceEEE-eCCeeEEEecCHHHHHHHHhhCcccccCCc
Q 037456 1 PPGPKSLPSI--GNFHQW----AGALPHQALTRLSKQHG--PVMKLQ-LGELLALVISSPGATQEVLKTNEISFAQRH 69 (123)
Q Consensus 1 ppgp~~~p~l--G~~~~~----~~~~~~~~~~~~~~~~g--~~~~~~-~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~ 69 (123)
||+|++.|.. +.+-.+ ...+++..+.++. +|| +++++. +| +.+++++++++++||++. ..|++++
T Consensus 13 ~~~p~~~p~~~~~~~~~~~~~~~~~~p~~~~~~l~-~~G~~pv~~~~~~g--~~vvv~~~~~v~~vl~~~-~~f~~~~ 86 (415)
T 2zwu_A 13 APLPPHVPEHLVFDFDMYNPSNLSAGVQEAWAVLQ-ESNVPDLVWTRCNG--GHWIATRGQLIREAYEDY-RHFSSEC 86 (415)
T ss_dssp CCCCTTSCGGGBCCCCTTSCTTGGGCHHHHHHGGG-STTSCSEEEECGGG--CEEEECSHHHHHHHHHCT-TTEETTS
T ss_pred CCCCCCCCcccccccCcCChhhcccChHHHHHHHH-hcCCCCeEEecCCC--CeEEEcCHHHHHHHHcCc-cccCCCc
Confidence 6788877764 433211 1346788888885 799 999988 55 588999999999999753 4566664
No 47
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide antibiotics, 12- and 14- carbon macrolactone monooxygenase, heme; HET: HEM; 1.92A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=98.08 E-value=3.6e-05 Score=52.51 Aligned_cols=43 Identities=16% Similarity=0.292 Sum_probs=38.3
Q ss_pred CCChHHHHHHHHHhhCCceEEEe-CCeeEEEecCHHHHHHHHhhC
Q 037456 18 GALPHQALTRLSKQHGPVMKLQL-GELLALVISSPGATQEVLKTN 61 (123)
Q Consensus 18 ~~~~~~~~~~~~~~~g~~~~~~~-g~~~~v~i~~p~~~~~vl~~~ 61 (123)
..+++..+.++ ++||+++++++ ++.+.+++++++++++||.++
T Consensus 16 ~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~ 59 (411)
T 1gwi_A 16 VTDLDGESARL-RAAGPLAAVELPGGVPVWAVTHHAEAKALLTDP 59 (411)
T ss_dssp CSCHHHHHHHH-HHTCSEEEEEETTTEEEEEECSHHHHHHHHTCT
T ss_pred cCChHHHHHHH-HHhCCeeeeecCCCccEEEEeCHHHHHHHHcCC
Confidence 45788889999 99999999997 888999999999999999764
No 48
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis; HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB: 2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Probab=98.00 E-value=1.5e-05 Score=54.53 Aligned_cols=42 Identities=14% Similarity=0.105 Sum_probs=37.0
Q ss_pred CChHHHHHHHHHhhCCceEEEe-CCeeEEEecCHHHHHHHHhhC
Q 037456 19 ALPHQALTRLSKQHGPVMKLQL-GELLALVISSPGATQEVLKTN 61 (123)
Q Consensus 19 ~~~~~~~~~~~~~~g~~~~~~~-g~~~~v~i~~p~~~~~vl~~~ 61 (123)
.+++..+.++ ++||+++++++ ++.+.+++++++++++||.++
T Consensus 37 ~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~i~~vl~~~ 79 (417)
T 2y5n_A 37 LTLAGRYGEL-QETEPVSRVRPPYGEEAWLVTRYEDVRAVLGDG 79 (417)
T ss_dssp CCCCHHHHHH-HHHCSEEEEECSBSCCEEEECSHHHHHHHHTCT
T ss_pred cCchHHHHHH-HhcCCeEeeccCCCceEEEECCHHHHHHHHcCC
Confidence 4677888899 89999999996 788899999999999999764
No 49
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans} SCOP: a.104.1.0 PDB: 3lxi_A*
Probab=97.89 E-value=3.9e-05 Score=52.43 Aligned_cols=79 Identities=15% Similarity=0.150 Sum_probs=55.5
Q ss_pred CChHHHHHHHHHhhC-CceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCcCC--------CC--------Cc------
Q 037456 19 ALPHQALTRLSKQHG-PVMKLQLGELLALVISSPGATQEVLKTNEISFAQRHET--------FA--------GQ------ 75 (123)
Q Consensus 19 ~~~~~~~~~~~~~~g-~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~~~--------~~--------~~------ 75 (123)
.+++..+.++.+++| +++++..++ +.+++++++.+++||++ ...|++++.. .+ ..
T Consensus 38 ~dp~~~~~~lr~~~G~pv~~~~~~~-~~~vv~~~~~v~~vl~~-~~~f~~~~~~~~~~~~~~~~~~~~~~dg~~h~~~R~ 115 (421)
T 3lxh_A 38 QGFHEAWKRVQQPDTPPLVWTPFTG-GHWIATRGTLIDEIYRS-PERFSSRVIWVPREAGEAYDMVPTKLDPPEHTPYRK 115 (421)
T ss_dssp GCHHHHHHHHCCTTCCSEEEESSTT-SEEEECSHHHHHHHHTC-TTTEETTCCSSSHHHHHHCCCTTTTCCTTTHHHHHH
T ss_pred cChhHHHHHHHhcCCCCeEeccCCC-CeEEEcCHHHHHHHHcC-hhhccCCcccCCcccccccccCCccCCcHHHHHHHH
Confidence 578888888877655 899988765 47889999999999954 4567766532 11 11
Q ss_pred ---cccCchHHH---HHHHHHHHHHHhhhc
Q 037456 76 ---HLVTSAKIK---MILVPLVEEILPLAA 99 (123)
Q Consensus 76 ---~~fs~~~l~---~~~~~~~~~~~~~~~ 99 (123)
++|+++.++ ..+.+.+++.++.+.
T Consensus 116 ~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~ 145 (421)
T 3lxh_A 116 AIDKGLNLAEIRKLEDQIRTIAVEIIEGFA 145 (421)
T ss_dssp HHHHHHSHHHHHTTHHHHHHHHHHHHHTTT
T ss_pred HHhhhcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888887 455566666665553
No 50
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding, oxidoreductase, omega-hydroxylation, iron, heme, fatty acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium tuberculosis} PDB: 2wm4_A*
Probab=97.87 E-value=6e-05 Score=51.84 Aligned_cols=48 Identities=8% Similarity=-0.024 Sum_probs=38.5
Q ss_pred ChHHHHHHHHHhhCCceEEEeC-------CeeEEEecCHHHHHHHHhhCcccccCCc
Q 037456 20 LPHQALTRLSKQHGPVMKLQLG-------ELLALVISSPGATQEVLKTNEISFAQRH 69 (123)
Q Consensus 20 ~~~~~~~~~~~~~g~~~~~~~g-------~~~~v~i~~p~~~~~vl~~~~~~~~~~~ 69 (123)
+++..+.++. +||+++++.++ +.+.+++++++.+++||.++ ..|++++
T Consensus 45 ~p~~~~~~l~-~~Gpv~~~~~~~~~~~~~g~~~vvv~~~~~v~~vl~~~-~~f~~~~ 99 (435)
T 2wm5_A 45 VRDGAFATLR-REAPISFWPTIELPGFVAGNGHWALTKYDDVFYASRHP-DIFSSYP 99 (435)
T ss_dssp HHHHHHHHHH-HHCSEEEECCCCC---CCCCCEEEECSHHHHHHHHHCT-TTEECSS
T ss_pred ChhHHHHHHH-hcCCeEecccccccccCCCCCeEEEcCHHHHHHHHcCc-ccccCcc
Confidence 5667788885 68999999875 55789999999999999875 4577765
No 51
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A {Novosphingobium aromaticivorans} PDB: 3ofu_A*
Probab=97.84 E-value=4.9e-05 Score=51.46 Aligned_cols=78 Identities=5% Similarity=-0.086 Sum_probs=55.4
Q ss_pred CCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCcCCC--------CCc--------------
Q 037456 18 GALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQRHETF--------AGQ-------------- 75 (123)
Q Consensus 18 ~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~~~~--------~~~-------------- 75 (123)
..+++..+.+++++ |+++++..++ +.+++++++++++||++. ..|++++... +..
T Consensus 23 ~~~p~~~~~~l~~~-Gpv~~~~~~~-~~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~g~~h~~~R~ 99 (396)
T 3oft_A 23 EQDYFAAWKTLLDG-PGLVWSTANG-GHWIAARGDVVRELWGDA-ERLSSQCLAVTPGLGKVMQFIPLQQDGAEHKAFRT 99 (396)
T ss_dssp TTCHHHHHHGGGGS-CSEEEECSTT-SEEEECSHHHHHHHHHCT-TTEESTTCCSSTTHHHHHCCTTTTCCHHHHHHHHH
T ss_pred hcChHHHHHHHHhc-CCeeeecCCC-CEEEEcCHHHHHHHHcCc-ccccCCcccCCCccccccccCccccCCcHHHHHHH
Confidence 35789999999998 9999998764 478899999999999654 5677765321 000
Q ss_pred ---cccCchHHH---HHHHHHHHHHHhhh
Q 037456 76 ---HLVTSAKIK---MILVPLVEEILPLA 98 (123)
Q Consensus 76 ---~~fs~~~l~---~~~~~~~~~~~~~~ 98 (123)
++|+++.++ ..+.+.+++.++.+
T Consensus 100 ~~~~~f~~~~l~~~~~~i~~~~~~l~~~l 128 (396)
T 3oft_A 100 PVMKGLASRFVVALEPKVQAVARKLMESL 128 (396)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888877 34444444444443
No 52
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans}
Probab=97.81 E-value=5.5e-05 Score=52.24 Aligned_cols=47 Identities=17% Similarity=0.125 Sum_probs=38.1
Q ss_pred hHHHHHHHHHhhCCce--EEE-eCCeeEEEecCHHHHHHHHhhCcccccCCc
Q 037456 21 PHQALTRLSKQHGPVM--KLQ-LGELLALVISSPGATQEVLKTNEISFAQRH 69 (123)
Q Consensus 21 ~~~~~~~~~~~~g~~~--~~~-~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~ 69 (123)
++..+.++ ++|||++ ++. +|+.+++++++++++++||++. ..|++++
T Consensus 47 p~~~~~~l-r~~gPV~~~~~~~~g~~~~~vvt~~~~v~~vl~~~-~~fs~~~ 96 (450)
T 3tkt_A 47 LLDRFDAL-RAEAPVAKVVAPDDEHEPFWLVSSFDGVMKASKDN-ATFLNNP 96 (450)
T ss_dssp HHHHHHHH-HHHCSEEEECCTTCSSCCEEEECSHHHHHHHHHCT-TTEESSS
T ss_pred chHHHHHH-HhcCCeecccccCCCCCCEEEEecHHHHHHHHhCc-ccccCCC
Confidence 66677777 6789999 887 6778899999999999999765 5666654
No 53
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB: 2z3u_A* 3a1l_A*
Probab=97.81 E-value=0.00018 Score=49.35 Aligned_cols=48 Identities=17% Similarity=0.198 Sum_probs=38.8
Q ss_pred CChHHHHHHHHHhhCCceEEEeC--CeeEEEecCHHHHHHHHhhCcccccCCc
Q 037456 19 ALPHQALTRLSKQHGPVMKLQLG--ELLALVISSPGATQEVLKTNEISFAQRH 69 (123)
Q Consensus 19 ~~~~~~~~~~~~~~g~~~~~~~g--~~~~v~i~~p~~~~~vl~~~~~~~~~~~ 69 (123)
.+++..+.++. +||+++++++| +.+.+++++++.+++||.++ .|++++
T Consensus 20 ~~p~~~~~~l~-~~Gpv~~~~~g~~~~~~~vv~~~~~v~~vl~~~--~f~~~~ 69 (425)
T 2z3t_A 20 ADPYPVYRRYR-EAAPVHRTASGPGKPDTYYVFTYDDVVRVLSNR--RLGRNA 69 (425)
T ss_dssp HCCHHHHHHHH-HHCSEEEECCCSSCCCEEEECSHHHHHHHHHCT--TEESSC
T ss_pred cChHHHHHHHH-hcCCeEeccccCCCCCeEEEcCHHHHHHHHcCC--Cccccc
Confidence 46677888876 49999999987 67799999999999999864 566653
No 54
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein, vancomycin biosynthes carrier protein, oxidoreductase; HET: HEM; 2.10A {Amycolatopsis balhimycina}
Probab=97.79 E-value=0.00017 Score=49.37 Aligned_cols=90 Identities=12% Similarity=0.013 Sum_probs=60.8
Q ss_pred CChHHHHHHHHHhhCCceEEE-eCC-eeEEEecCHHHHHHHHhhCcccccCCcCC-----------C-CCc---------
Q 037456 19 ALPHQALTRLSKQHGPVMKLQ-LGE-LLALVISSPGATQEVLKTNEISFAQRHET-----------F-AGQ--------- 75 (123)
Q Consensus 19 ~~~~~~~~~~~~~~g~~~~~~-~g~-~~~v~i~~p~~~~~vl~~~~~~~~~~~~~-----------~-~~~--------- 75 (123)
.+++..+.++.+ |||++++. .|. .+.+++++++.+++||++. ..|++++.. . +..
T Consensus 37 ~dp~~~~~~lr~-~gpV~~~~~~g~~~~~~vv~~~~~v~~vl~~~-~~fs~~~~~~~~~~~~~~~~~~~~~l~~~dg~~h 114 (415)
T 3mgx_A 37 LERHARWRELAA-EDAMVWSDPGSSPSGFWSVFSHRACAAVLAPS-APLTSEYGMMIGFDRDHPDNSGGRMMVVSEHEQH 114 (415)
T ss_dssp TTHHHHHHHHHH-HTCCEEECSSSSSSCEEEECSHHHHHHHSCTT-SSEECTTCSSTTCCSSSCCTTTTTSGGGCCHHHH
T ss_pred CChhHHHHHHHh-cCCEeeccCCCCcCCEEEEecHHHHHHHHhCh-hhhcCCccccccccccccccccCCCccccCcHHH
Confidence 467888888876 89999886 443 6789999999999999654 456655322 0 211
Q ss_pred --------cccCchHHH---HHHHHHHHHHHhhhccccccccccch
Q 037456 76 --------HLVTSAKIK---MILVPLVEEILPLAAGFVITDLYPSL 110 (123)
Q Consensus 76 --------~~fs~~~l~---~~~~~~~~~~~~~~~~~~~~d~~p~~ 110 (123)
++|++++++ ..+.+.+++.++.+......|+...+
T Consensus 115 ~~~R~~~~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~~~dl~~~~ 160 (415)
T 3mgx_A 115 RKLRKLVGPLLSRAAARKLAERVRIEVGDVLGRVLDGEVCDAATAI 160 (415)
T ss_dssp HHHHHHHGGGSSHHHHHHSHHHHHHHHHHHTTTSSSSSCEESTTTT
T ss_pred HHHHHHhHhhhCHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 889998887 45566666666665433334555544
No 55
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein, oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB: 3nc5_A* 3nc6_A* 3nc7_A*
Probab=97.78 E-value=6.5e-05 Score=51.77 Aligned_cols=85 Identities=15% Similarity=0.178 Sum_probs=55.1
Q ss_pred ChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCcCC------CCCc------------------
Q 037456 20 LPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQRHET------FAGQ------------------ 75 (123)
Q Consensus 20 ~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~~~------~~~~------------------ 75 (123)
+++..+.++ ++||++++...++ .+++++++.+++||++.. .|++++.. .+..
T Consensus 54 ~p~~~~~~l-r~~gpv~~~~~~~--~~vv~~~~~v~~vl~~~~-~f~~~~~~~~~~~~~~~~~l~~~dg~~h~~~Rr~~~ 129 (441)
T 3nc3_A 54 NPYAYFSQL-REEDPVHYEESID--SYFISRYHDVRYILQHPD-IFTTKSLVERAEPVMRGPVLAQMHGKEHSAKRRIVV 129 (441)
T ss_dssp CGGGTHHHH-HHHCSEEEETTTT--EEEECCHHHHHHHHHCTT-TEECCCTTSCCCCSCC-------------CCHHHHH
T ss_pred ChHHHHHHH-HhcCCEEEeCCCC--EEEEcCHHHHHHHhcCcc-cccccccccccccccCCCccccCCcHHHHHHHHHHH
Confidence 455566665 6899999886555 788999999999997654 36665432 1110
Q ss_pred cccCchHHH---HHHHHHHHHHHhhhcccccccccc
Q 037456 76 HLVTSAKIK---MILVPLVEEILPLAAGFVITDLYP 108 (123)
Q Consensus 76 ~~fs~~~l~---~~~~~~~~~~~~~~~~~~~~d~~p 108 (123)
++|+++.++ ..+.+.+++.++.+......|+..
T Consensus 130 ~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~~~dl~~ 165 (441)
T 3nc3_A 130 RSFIGDALDHLSPLIKQNAENLLAPYLERGKSDLVN 165 (441)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHTTTTTTTEEECCC
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 888888877 445556666666554333345433
No 56
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A {Pseudomonas SP} SCOP: a.104.1.1
Probab=97.74 E-value=1.7e-05 Score=54.33 Aligned_cols=59 Identities=10% Similarity=0.028 Sum_probs=43.8
Q ss_pred cccchhhhc---C-CChHHHHHHHHHhhCCceEEEe-CCeeEEEecCHHHHHHHHhhCcccccCCc
Q 037456 9 SIGNFHQWA---G-ALPHQALTRLSKQHGPVMKLQL-GELLALVISSPGATQEVLKTNEISFAQRH 69 (123)
Q Consensus 9 ~lG~~~~~~---~-~~~~~~~~~~~~~~g~~~~~~~-g~~~~v~i~~p~~~~~vl~~~~~~~~~~~ 69 (123)
++|++.... . .+++..+.++.+ ||++++++. |+.+++++++++.++++|+++ ..|++++
T Consensus 11 ~~g~l~~~~~~~~~~~p~~~~~~l~~-~gpv~~~~~~g~~~~vvv~~~~~v~~vl~~~-~~fs~r~ 74 (428)
T 1cpt_A 11 IARTVILPQGYADDEVIYPAFKWLRD-EQPLAMAHIEGYDPMWIATKHADVMQIGKQP-GLFSNAE 74 (428)
T ss_dssp HHHHHHSSGGGGCHHHHHHHHHHHHH-HCSEEEECCTTSCCEEEECSHHHHHHHHHCT-TTEESSS
T ss_pred hhcccCChhhhcccCCccHHHHHHHH-hCCeeeccccCCCCeEEEccHHHHHHHHcCc-hhccCcc
Confidence 788765431 1 346777888876 799999987 677899999999999999764 3455553
No 57
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET: HEM; 2.90A {Streptomyces coelicolor} PDB: 4fxb_A*
Probab=97.71 E-value=0.0002 Score=48.88 Aligned_cols=48 Identities=17% Similarity=0.198 Sum_probs=39.5
Q ss_pred CCChHHHHHHHHHhhCCceEEEeC-CeeEEEecCHHHHHHHHhhCcccccCC
Q 037456 18 GALPHQALTRLSKQHGPVMKLQLG-ELLALVISSPGATQEVLKTNEISFAQR 68 (123)
Q Consensus 18 ~~~~~~~~~~~~~~~g~~~~~~~g-~~~~v~i~~p~~~~~vl~~~~~~~~~~ 68 (123)
..+++..+.++.++ |++++++++ +.+.+++++++++++||++. .|+++
T Consensus 28 ~~dp~~~~~~l~~~-Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~--~f~~~ 76 (417)
T 3tyw_A 28 PFAAPAEYAALRTD-DPVARVTLPTRREAWVVTRYDDVRELLSDP--RVSAD 76 (417)
T ss_dssp TTSCCTHHHHHHHT-CTEEEEECTTSCEEEEECCHHHHHHHHHCT--TEECC
T ss_pred ccCchHHHHHHHhh-CCeeeeecCCCCCeEEEcCHHHHHHHHcCC--CcccC
Confidence 35777888999988 999999986 47899999999999999865 45553
No 58
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM; 1.60A {Mycobacterium tuberculosis}
Probab=97.69 E-value=0.00033 Score=47.48 Aligned_cols=85 Identities=13% Similarity=0.089 Sum_probs=56.3
Q ss_pred CCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCcCC-----CCCc-----------------
Q 037456 18 GALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQRHET-----FAGQ----------------- 75 (123)
Q Consensus 18 ~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~~~-----~~~~----------------- 75 (123)
..+++..+.++++ ||+++++. . +.+++++++++++||.++. .|++++.. .+..
T Consensus 17 ~~~p~~~~~~l~~-~Gpv~~~~--~-~~vvv~~~~~v~~vl~~~~-~f~~~~~~~~~~~~~~~l~~~~g~~h~~~R~~~~ 91 (398)
T 2xkr_A 17 SREARAAYRWMRA-NQPVFRDR--N-GLAAASTYQAVIDAERQPE-LFSNAGGIRPDQPALPMMIDMDDPAHLLRRKLVN 91 (398)
T ss_dssp CTTHHHHHHHHHH-HCSEEECT--T-CCEEECSHHHHHHHHTCTT-TEESTTCSSTTSCCCSSGGGCCTTHHHHHHHHHG
T ss_pred ccChhHHHHHHHh-cCCeeecC--C-CeEEEecHHHHHHHHhCcc-cccCccccCCcccccccccccCchHHHHHHHHhh
Confidence 3567888888887 99998553 3 6889999999999997653 56665422 1111
Q ss_pred cccCchHHH---HHHHHHHHHHHhhhccccccccc
Q 037456 76 HLVTSAKIK---MILVPLVEEILPLAAGFVITDLY 107 (123)
Q Consensus 76 ~~fs~~~l~---~~~~~~~~~~~~~~~~~~~~d~~ 107 (123)
++|+++.++ ..+.+.+++.++.+...+..|+.
T Consensus 92 ~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~d~~ 126 (398)
T 2xkr_A 92 AGFTRKRVKDKEASIAALCDTLIDAVCERGECDFV 126 (398)
T ss_dssp GGSCHHHHHTTHHHHHHHHHHHHHTTTTTSEEEHH
T ss_pred hhhCHHHHHHHHHHHHHHHHHHHHhhhhcCCccHH
Confidence 889988887 44555555555554322233444
No 59
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A {Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Probab=97.63 E-value=0.00012 Score=50.07 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=33.0
Q ss_pred ChHHHHHHHHHhhCCceEEEeCC--eeEEEecCHHHHHHHHhh
Q 037456 20 LPHQALTRLSKQHGPVMKLQLGE--LLALVISSPGATQEVLKT 60 (123)
Q Consensus 20 ~~~~~~~~~~~~~g~~~~~~~g~--~~~v~i~~p~~~~~vl~~ 60 (123)
+++..+.+++ +||+++++.+++ .+.+++++++.+++||..
T Consensus 28 ~p~~~~~~l~-~~Gpv~~~~~~~g~~~~~vv~~~~~v~~vl~~ 69 (411)
T 2dkk_A 28 EFDPVLAELM-REGPLTRVRLPHGEGWAWLATRYDDVKAITND 69 (411)
T ss_dssp CCCHHHHHHH-TTCSEEEEECSBSBSCEEEECSHHHHHHHTTC
T ss_pred cccHHHHHHH-hcCCeEeeecCCCceeEEEEcCHHHHHHHHcC
Confidence 3447777876 799999998754 678999999999999975
No 60
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase, metal-binding, AN biosynthesis, TIE-ROD mechanism of action; HET: HEM; 1.59A {Saccharopolyspora erythraea} PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Probab=97.57 E-value=0.00021 Score=48.64 Aligned_cols=73 Identities=15% Similarity=0.128 Sum_probs=49.9
Q ss_pred ChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCcCC-------CCCc-----------------
Q 037456 20 LPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQRHET-------FAGQ----------------- 75 (123)
Q Consensus 20 ~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~~~-------~~~~----------------- 75 (123)
+++..+.++.+ ||++ +.++.+.+++++++.+++||.+. ..|++++.. .+..
T Consensus 29 ~p~~~~~~l~~-~gpv---~~~~~~~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~g~~~~~~R~~~~ 103 (411)
T 2jjn_A 29 ALLDWLGTMRE-KQPV---WQDRYGVWHVFRHADVQTVLRDT-ATFSSDPTRVIEGASPTPGMIHEIDPPEHRALRKVVS 103 (411)
T ss_dssp HHHHHHHHHHH-HCSE---EECTTSCEEECSHHHHHHHHHCT-TTEESCGGGGSTTCCCCTTCGGGCCTTHHHHHHHHHH
T ss_pred ChHHHHHHHHH-hCCc---ccCCCCeEEECCHHHHHHHHcCc-ccccCcccccCCcccccccccccCCchHHHHHHHHhh
Confidence 56777888876 9998 56666789999999999999864 356666421 1111
Q ss_pred cccCchHHH---HHHHHHHHHHHhh
Q 037456 76 HLVTSAKIK---MILVPLVEEILPL 97 (123)
Q Consensus 76 ~~fs~~~l~---~~~~~~~~~~~~~ 97 (123)
++|+++.++ ..+.+.+++.++.
T Consensus 104 ~~fs~~~l~~~~~~i~~~~~~ll~~ 128 (411)
T 2jjn_A 104 SAFTPRTISDLEPRIRDVTRSLLAD 128 (411)
T ss_dssp HHSCHHHHHTTHHHHHHHHHHHHHT
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHhc
Confidence 888888877 4445555555544
No 61
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450 fold, structural genomics, PSI, protein structure initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A* 3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Probab=97.47 E-value=0.00015 Score=49.15 Aligned_cols=43 Identities=23% Similarity=0.301 Sum_probs=37.8
Q ss_pred CCChHHHHHHHHHhhCCceEEEe-CCeeEEEecCHHHHHHHHhhC
Q 037456 18 GALPHQALTRLSKQHGPVMKLQL-GELLALVISSPGATQEVLKTN 61 (123)
Q Consensus 18 ~~~~~~~~~~~~~~~g~~~~~~~-g~~~~v~i~~p~~~~~vl~~~ 61 (123)
..+++..+.++ ++||+++++++ ++.+.++++++++++++|.++
T Consensus 15 ~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~ 58 (396)
T 1n40_A 15 GDRIPDAVAEL-RTREPIRKVRTITGAEAWLVSSYALCTQVLEDR 58 (396)
T ss_dssp SSSCCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHHTCT
T ss_pred ccCccHHHHHH-HHhCCeeEeecCCCceEEEEecHHHHHHHHhCC
Confidence 35678889999 99999999997 788899999999999999764
No 62
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase, metal-binding, oxidoreductase, hypothetical protein; HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB: 2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Probab=97.42 E-value=0.00042 Score=47.31 Aligned_cols=47 Identities=17% Similarity=0.208 Sum_probs=36.7
Q ss_pred CChHHHHHHHHHhhCCce-----EEEeCCeeEEEecCHHHHHHHHhhCcccccCCc
Q 037456 19 ALPHQALTRLSKQHGPVM-----KLQLGELLALVISSPGATQEVLKTNEISFAQRH 69 (123)
Q Consensus 19 ~~~~~~~~~~~~~~g~~~-----~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~ 69 (123)
.+++..+.++. +||+++ ++.+ .+.+++++++++++||.++ ..|++++
T Consensus 25 ~~p~~~~~~l~-~~Gpv~~~~~~~~~~--~~~vvv~~~~~v~~vl~~~-~~f~~~~ 76 (414)
T 2uuq_A 25 PNPWPMYRALR-DHDPVHHVVPPQRPE--YDYYVLSRHADVWSAARDH-QTFSSAQ 76 (414)
T ss_dssp TCCHHHHHHHH-HHCSEEEECCTTCGG--GCEEEECSHHHHHHHHHCT-TTEESTT
T ss_pred cCchHHHHHHH-hcCCEEcccccccCC--CCEEEEcCHHHHHHHHcCc-hhccCCC
Confidence 46788888884 689998 7765 5688999999999999875 4566653
No 63
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A {Streptomyces natalensis} PDB: 2x9p_A*
Probab=97.39 E-value=0.0003 Score=47.99 Aligned_cols=42 Identities=14% Similarity=0.264 Sum_probs=36.8
Q ss_pred CChHHHHHHHHHhhCCceEEEe-CCeeEEEecCHHHHHHHHhhC
Q 037456 19 ALPHQALTRLSKQHGPVMKLQL-GELLALVISSPGATQEVLKTN 61 (123)
Q Consensus 19 ~~~~~~~~~~~~~~g~~~~~~~-g~~~~v~i~~p~~~~~vl~~~ 61 (123)
.+++..+.++ ++||+++++++ ++.+.+++++++++++||.++
T Consensus 26 ~~p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~ 68 (404)
T 2xbk_A 26 LKLSPLLRAL-QDRGPIHRVRTPAGDEAWLVTRHAELKQLLHDE 68 (404)
T ss_dssp TBCCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHTTCT
T ss_pred cCccHHHHHH-HhhCCEeeeccCCCceEEEEcCHHHHHHHHcCC
Confidence 4677788889 89999999997 788899999999999999763
No 64
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105, oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea recticatena}
Probab=97.35 E-value=0.00033 Score=47.84 Aligned_cols=48 Identities=25% Similarity=0.332 Sum_probs=39.1
Q ss_pred CCChHHHHHHHHHhhCCceEEEe-CCeeEEEecCHHHHHHHHhhCcccccCC
Q 037456 18 GALPHQALTRLSKQHGPVMKLQL-GELLALVISSPGATQEVLKTNEISFAQR 68 (123)
Q Consensus 18 ~~~~~~~~~~~~~~~g~~~~~~~-g~~~~v~i~~p~~~~~vl~~~~~~~~~~ 68 (123)
..+++..+.++. +||+++++++ |+.+.+++++++++++||.+. .|+++
T Consensus 21 ~~~p~~~~~~l~-~~Gpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~ 69 (413)
T 2z36_A 21 PFAPPAAYERLR-ERAPINKVRLTSGGQAWWVSGHEEARAVLADG--RFSSD 69 (413)
T ss_dssp TTBCCHHHHHHH-HHCSEEEEEETTSCEEEEECSHHHHHHHHHCT--TEECC
T ss_pred ccCchHHHHHHH-HcCCeeEeecCCCceEEEEecHHHHHHHHcCC--CcccC
Confidence 346777888887 7899999997 788899999999999999863 35544
No 65
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12; 1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Probab=97.29 E-value=0.0011 Score=45.17 Aligned_cols=40 Identities=25% Similarity=0.323 Sum_probs=33.3
Q ss_pred CCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhC
Q 037456 18 GALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTN 61 (123)
Q Consensus 18 ~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~ 61 (123)
..+++..+.++ ++||++++..+| .+++++++.+++||++.
T Consensus 28 ~~~p~~~~~~l-r~~gpv~~~~~g---~~vv~~~~~v~~vl~~~ 67 (418)
T 3r9b_A 28 RADPYPIYDRI-RRGGPLALPEAN---LAVFSSFSDCDDVLRHP 67 (418)
T ss_dssp TTCCHHHHHHH-HHHCCEEEGGGT---EEEECSHHHHHHHHHCT
T ss_pred ccCchHHHHHH-HhcCCEEECCCC---eEEEecHHHHHHHHcCc
Confidence 35778888888 578999987766 78899999999999764
No 66
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase, oxidoreductase; HET: HEM; 2.00A {Sphingopyxis macrogoltabida}
Probab=97.23 E-value=0.0033 Score=43.11 Aligned_cols=90 Identities=14% Similarity=-0.012 Sum_probs=59.1
Q ss_pred CChHHHHHHHHHhhCCceEEEe-CCeeEEEecCHHHHHHHHhhCcccccCCcC----CC---------------------
Q 037456 19 ALPHQALTRLSKQHGPVMKLQL-GELLALVISSPGATQEVLKTNEISFAQRHE----TF--------------------- 72 (123)
Q Consensus 19 ~~~~~~~~~~~~~~g~~~~~~~-g~~~~v~i~~p~~~~~vl~~~~~~~~~~~~----~~--------------------- 72 (123)
.+++..+.++.++ ||++.+.. ++.+.+++++++.+++||++. ..|++++. ..
T Consensus 38 ~~p~~~~~~lr~~-gpv~~~~~~~~~~~~vvt~~~~v~~vl~d~-~~fs~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 115 (426)
T 3rwl_A 38 DSVGEYFKRLRKD-DPVHYCADSAFGPYWSITKYNDIMHVDTNH-DIFSSDAGYGGIIIDDGIQKGGDGGLDLPNFIAMD 115 (426)
T ss_dssp TCHHHHHHHHHHH-CSEEEESCCTTCSEEEECSHHHHHHHHHCT-TTEECCGGGTCSSSSCCC-------CCCCCGGGCC
T ss_pred CCccHHHHHHHhc-CCeeeccCCCCCCEEEEcCHHHHHHHHcCC-cccccccccCCCCcccccccccccccccCcccccC
Confidence 4578888888775 99999876 456689999999999999765 34544320 00
Q ss_pred CCc---------cccCchHHH---HHHHHHHHHHHhhhccccccccccch
Q 037456 73 AGQ---------HLVTSAKIK---MILVPLVEEILPLAAGFVITDLYPSL 110 (123)
Q Consensus 73 ~~~---------~~fs~~~l~---~~~~~~~~~~~~~~~~~~~~d~~p~~ 110 (123)
|.. +.|+++.++ ..+.+.+++.++.+......|+...+
T Consensus 116 g~~h~~~R~~~~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~~~dl~~~~ 165 (426)
T 3rwl_A 116 RPRHDEQRKAVSPIVAPANLAALEGTIRERVSKTLDGLPVGEEFDWVDRV 165 (426)
T ss_dssp TTHHHHHHHHHGGGGCHHHHHHHHHHHHHHHHHHHHTSCSSSCEEHHHHT
T ss_pred chHHHHHHHHhhhhhCHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHH
Confidence 000 899998887 45566666666665433344544433
No 67
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A {Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A* 1pkf_A*
Probab=97.22 E-value=0.0005 Score=46.97 Aligned_cols=47 Identities=21% Similarity=0.326 Sum_probs=38.0
Q ss_pred CCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCc
Q 037456 18 GALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQRH 69 (123)
Q Consensus 18 ~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~ 69 (123)
..+++..+.++ ++||++++ + ++.+.+++++++.+++||.++. |++++
T Consensus 25 ~~~p~~~~~~l-~~~Gpv~~-~-~~~~~vvv~~~~~v~~vl~~~~--f~~~~ 71 (419)
T 1q5d_A 25 AEDPFPAIERL-REATPIFY-W-DEGRSWVLTRYHDVSAVFRDER--FAVSR 71 (419)
T ss_dssp TTCCHHHHHHH-HHHCSEEE-E-TTTTEEEECSHHHHHHHHTCTT--EECCG
T ss_pred hhChHHHHHHH-HhhCCccc-c-CCCCEEEEecHHHHHHHHcCCC--ccccc
Confidence 35778888888 78999998 5 6667899999999999998653 66654
No 68
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.50A {Sulfolobus solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A* 1io9_A* 1io8_A*
Probab=97.13 E-value=0.0025 Score=42.76 Aligned_cols=42 Identities=21% Similarity=0.207 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCc
Q 037456 22 HQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQRH 69 (123)
Q Consensus 22 ~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~ 69 (123)
+..+.++ ++||+++++ | +.+++++++++++||.+. ..|++++
T Consensus 2 ~~~~~~l-r~~Gpv~~~--g--~~~vv~~~~~v~~vl~~~-~~f~~~~ 43 (368)
T 1io7_A 2 YDWFSEM-RKKDPVYYD--G--NIWQVFSYRYTKEVLNNF-SKFSSDL 43 (368)
T ss_dssp HHHHHHH-HHHCSEEEC--S--SCEEECSHHHHHHHHHCT-TTEECCC
T ss_pred CHHHHHH-HhcCCeEeE--C--CEEEEecHHHHHHHHcCc-ccccccc
Confidence 3456666 589999877 4 478899999999999864 3455554
No 69
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A {Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A* 4dnz_A*
Probab=97.07 E-value=0.0049 Score=42.05 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=30.6
Q ss_pred CChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhC
Q 037456 19 ALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTN 61 (123)
Q Consensus 19 ~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~ 61 (123)
.+++..+.++.+ +||+++. +...++++++.+.+++||+..
T Consensus 34 ~dP~~~~~~lR~-~gPV~~~--~~~~~~~vt~~~~v~~vl~d~ 73 (412)
T 4dnj_A 34 ADPYPEQETLRE-AGPVVYL--DKWNVYGVARYAEVYAVLNDP 73 (412)
T ss_dssp HSCHHHHHHHHH-HCSSEEE--TTTTEEEECSHHHHHHHHTCT
T ss_pred hCcHHHHHHHHh-cCCEEEE--CCCCEEEECCHHHHHHHHcCC
Confidence 567777877754 7999754 455678899999999999654
No 70
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta binding protein; HET: HEM; 2.47A {Micromonospora echinospora}
Probab=96.93 E-value=0.00071 Score=45.82 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=30.9
Q ss_pred CChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhh
Q 037456 19 ALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKT 60 (123)
Q Consensus 19 ~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~ 60 (123)
.+++..+.++ ++||++++ + | .+.+++++++++++||.+
T Consensus 13 ~~p~~~~~~l-~~yGpv~~-~-g-~~~~vv~~~~~v~~vl~~ 50 (397)
T 3buj_A 13 RDPYPSYHWL-LRHDPVHR-G-A-HRVWYVSRFADVRAVLGD 50 (397)
T ss_dssp HCCHHHHHHH-HHHCSEEE-C-G-GGCEEECSHHHHHHHHTC
T ss_pred cCchHHHHHH-HhcCCeee-C-C-CCeEEEcCHHHHHHHHcC
Confidence 3567777666 58999998 6 4 678999999999999975
No 71
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450 vancomycin, oxidoreductase; HET: HEM; 1.70A {Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A* 1lgf_A*
Probab=96.76 E-value=0.0029 Score=42.85 Aligned_cols=42 Identities=14% Similarity=0.343 Sum_probs=28.1
Q ss_pred HHHHHhhCCceEEEeC-Ce---eEEEecCHHHHHHHHhhCcccccCCc
Q 037456 26 TRLSKQHGPVMKLQLG-EL---LALVISSPGATQEVLKTNEISFAQRH 69 (123)
Q Consensus 26 ~~~~~~~g~~~~~~~g-~~---~~v~i~~p~~~~~vl~~~~~~~~~~~ 69 (123)
.++.++ |+++++.++ +. +++++++++.+++||..+ ..|++++
T Consensus 20 ~~l~~~-Gpv~~~~~~~g~~~~~~vvv~~~~~v~~vl~~~-~~f~~~~ 65 (398)
T 1lfk_A 20 DELLAA-GALTRVTIGSGADAETHWMATAHAVVRQVMGDH-QQFSTRR 65 (398)
T ss_dssp HHHHTS-CSEEEEC------CCCEEEECSHHHHHHHHHCT-TTEEECT
T ss_pred HHHHhc-CCccccccCCCCcccceEEEecHHHHHHHHhhC-ccccccc
Confidence 346665 999998764 34 789999999999999333 2354443
No 72
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus} PDB: 2rfc_A*
Probab=96.48 E-value=0.0056 Score=40.61 Aligned_cols=64 Identities=14% Similarity=0.134 Sum_probs=42.2
Q ss_pred HhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCcCCC-----CCc-----------------cccCchHHH---
Q 037456 30 KQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQRHETF-----AGQ-----------------HLVTSAKIK--- 84 (123)
Q Consensus 30 ~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~~~~-----~~~-----------------~~fs~~~l~--- 84 (123)
++|||++++ | .+++++++++++||.++ ..|++++..+ +.. ++|+++.++
T Consensus 2 r~~gpv~~~--g---~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~l~~~~g~~~~~~R~~~~~~fs~~~l~~~~ 75 (343)
T 2rfb_A 2 RLNDPVHYD--G---AWHVYKYSDVKHVLMND-KIFSSNPGNRYSNAGGISFITMDNPEHKEFRDISAPYFLPSKINDYK 75 (343)
T ss_dssp -CCCCEEET--T---EEEECSHHHHHHHHHCT-TTEESSCSSCCC---CCGGGGCCHHHHHHHHHHHHHHHSHHHHGGGH
T ss_pred CCcCCeeee--C---eEEEcCHHHHHHHHhCh-hhcccCCcCCCCCccccccccCCchHHHHHHHHhhhhcCHHHHHHHH
Confidence 579999876 3 78899999999999875 3577765211 111 788887776
Q ss_pred HHHHHHHHHHHhhhc
Q 037456 85 MILVPLVEEILPLAA 99 (123)
Q Consensus 85 ~~~~~~~~~~~~~~~ 99 (123)
..+.+.+++.++.+.
T Consensus 76 ~~i~~~~~~l~~~l~ 90 (343)
T 2rfb_A 76 DFIEETSNDLIKNID 90 (343)
T ss_dssp HHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHhcc
Confidence 444555555555443
No 73
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Probab=95.88 E-value=0.0084 Score=40.21 Aligned_cols=41 Identities=12% Similarity=0.139 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCC
Q 037456 22 HQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQR 68 (123)
Q Consensus 22 ~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~ 68 (123)
+..+.++ ++|||++++. | .+++++++.+++||.+. ..|+++
T Consensus 2 ~~~~~~l-r~~gpv~~~~-g---~~vv~~~~~v~~vl~~~-~~f~~~ 42 (367)
T 3b4x_A 2 YDWFKQM-RKESPVYYDG-K---VWNLFKYEDCKMVLNDH-KRFSSN 42 (367)
T ss_dssp HHHHHHH-HHHCSEEECS-S---SEEECSHHHHHHHHHCT-TTEECC
T ss_pred CHHHHHH-HHcCCceeeC-C---EEEEecHHHHHHHHcCc-hhhccC
Confidence 3456666 5799999887 4 78899999999999865 345554
No 74
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A {Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Probab=95.56 E-value=0.011 Score=40.26 Aligned_cols=41 Identities=5% Similarity=0.037 Sum_probs=31.9
Q ss_pred CChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCc
Q 037456 19 ALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNE 62 (123)
Q Consensus 19 ~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~ 62 (123)
.+++.. ++.++||+++.+.+|+.. +++++++.+++||++..
T Consensus 33 ~~P~~~--~~lr~~gpv~~~~~g~~~-~vv~~~~~v~~vL~d~~ 73 (416)
T 3p3o_A 33 NFSWDS--PEVAEAREKSWIARTPLA-LLVLRYAEADQLARDKR 73 (416)
T ss_dssp TCCTTS--HHHHHHHHHCSEEECSSS-EEECSHHHHHHHHHCTT
T ss_pred cCCchH--HHHHHhCCccccccCCCc-eEEeCHHHHHHHHcCcc
Confidence 345555 555679999998887655 88999999999997653
No 75
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX, bioremediation, electron transport; HET: HEM; 1.49A {Rhodococcus} PDB: 2wiv_A*
Probab=94.87 E-value=0.03 Score=37.85 Aligned_cols=86 Identities=17% Similarity=0.144 Sum_probs=52.4
Q ss_pred CChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCCc------C-------C---CCCc-------
Q 037456 19 ALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQRH------E-------T---FAGQ------- 75 (123)
Q Consensus 19 ~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~------~-------~---~~~~------- 75 (123)
.+++..+.++.+ +||+++...| .+++++++.++++++.. .|+.++ . . .|..
T Consensus 20 ~dp~~~~~~lr~-~~pv~~~~~g---~~~v~~~~~v~~~l~d~--~fs~~~~~~~~~~~~~~~~~l~~~dg~~h~~~R~~ 93 (394)
T 2wiy_A 20 NNPYPWYRRLQQ-DHPVHKLEDG---TYLVSRYADVSHFAKLP--IMSVEPGWADAGPWAVASDTALGSDPPHHTVLRRQ 93 (394)
T ss_dssp HCCHHHHHHHHH-HCSEEECTTS---CEEECCHHHHHHHTTST--TEECHHHHHTCGGGGGGGGSGGGCCTTHHHHHHHH
T ss_pred cCccHHHHHHHh-cCCeEEecCC---eEEEcCHHHHHHHHcCC--CccccccccccccchhcccccccCCchHHHHHHHH
Confidence 356777777765 5898876543 57889999999999643 233211 0 0 1111
Q ss_pred --cccCchHHH---HHHHHHHHHHHhhhccccccccccch
Q 037456 76 --HLVTSAKIK---MILVPLVEEILPLAAGFVITDLYPSL 110 (123)
Q Consensus 76 --~~fs~~~l~---~~~~~~~~~~~~~~~~~~~~d~~p~~ 110 (123)
++|++++++ ..+.+.+++.++.+......|+...+
T Consensus 94 ~~~~fs~~~~~~~~~~i~~~~~~l~~~~~~~~~~d~~~~~ 133 (394)
T 2wiy_A 94 TNKWFTPKLVDGWVRTTRELVGDLLDGVEAGQVIEARRDL 133 (394)
T ss_dssp HHTTCSHHHHHHHTHHHHHHHHHHHHTCCTTCCEEHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHHHHHHHHHHhccCCeeHHHHH
Confidence 899999888 45566666666654332333444333
No 76
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=93.64 E-value=0.0098 Score=40.45 Aligned_cols=56 Identities=14% Similarity=0.198 Sum_probs=40.5
Q ss_pred CCCcccchhhh----cCCChHHHHHHHHHhhCCceEEEeCCeeEEEecCHHHHHHHHhhCcccccCC
Q 037456 6 SLPSIGNFHQW----AGALPHQALTRLSKQHGPVMKLQLGELLALVISSPGATQEVLKTNEISFAQR 68 (123)
Q Consensus 6 ~~p~lG~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~g~~~~v~i~~p~~~~~vl~~~~~~~~~~ 68 (123)
++|++|+...+ ...+++..+.++.++ ++++.. ...+++++++.+++||.+ ..|+++
T Consensus 42 ~~P~~G~~~~~~~~~~~~dp~~~~~~lr~~--pV~~~~---~~~~vv~~~~~v~~vl~d--~~f~~~ 101 (381)
T 2yjn_B 42 GYGSNGDPYPMLLCGHDDDPQRRYRSMRES--GVRRSR---TETWVVADHATARQVLDD--PAFTRA 101 (381)
T ss_dssp HHHHHTCHHHHHHHTCCSCCHHHHHHHHHH--CEEECS---SSCEEECSHHHHHHHHHC--SSEESS
T ss_pred cccccCCchhhcCchhccCchHHHHHHHhC--CceeCC---CCEEEEcCHHHHHHHHcC--CCcCCC
Confidence 56888976442 135778888888865 887653 357889999999999975 356554
No 77
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent, mono-oxygenases, oxidoreductase; HET: HEM; 2.00A {Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Probab=93.38 E-value=0.39 Score=32.84 Aligned_cols=77 Identities=12% Similarity=0.066 Sum_probs=45.8
Q ss_pred CChHHHHHHHHHhhCCceEEE--eCCeeEEEecCHHHHHHHHhhCcccccCCcCC----CC-----------C-c-----
Q 037456 19 ALPHQALTRLSKQHGPVMKLQ--LGELLALVISSPGATQEVLKTNEISFAQRHET----FA-----------G-Q----- 75 (123)
Q Consensus 19 ~~~~~~~~~~~~~~g~~~~~~--~g~~~~v~i~~p~~~~~vl~~~~~~~~~~~~~----~~-----------~-~----- 75 (123)
.+++..+.++... |+....| .++ ...+++..+.+++||+.. ..|+++... .+ . .
T Consensus 37 ~~~~~~~~~lr~~-~~~~~~~~~~~g-g~W~vtr~~dv~~vl~d~-~~fs~~~~~~~~~~~~~~~~~~~~~D~p~H~r~R 113 (417)
T 4dxy_A 37 DGYHEAWKKVQHP-GIPDLIWTPFTG-GHWIATNGDTVKEVYSDP-TRFSSEVIFLPKEAGEKAQMVPTKMDPPEHTPYR 113 (417)
T ss_dssp GCHHHHHHHHSCT-TCCSEEEESSTT-SEEEECSHHHHHHHHTCT-TTEESSCCSSSTTSSCSSCTTTTTCCTTTHHHHH
T ss_pred cChHHHHHHHHhh-CCCCEEecCCCC-CEEEECCHHHHHHHHcCc-hhccCCCcccccccccccccCcccCCcHHHHHHH
Confidence 4677777777654 4332333 222 356789999999999643 456554322 00 0 0
Q ss_pred ----cccCchHHH---HHHHHHHHHHHhhh
Q 037456 76 ----HLVTSAKIK---MILVPLVEEILPLA 98 (123)
Q Consensus 76 ----~~fs~~~l~---~~~~~~~~~~~~~~ 98 (123)
++||+++++ ..+.+.+++.++.+
T Consensus 114 rll~~~Fs~~~l~~~~~~i~~~~~~lld~l 143 (417)
T 4dxy_A 114 KALDKGLNLAKIRKVEDKVREVASSLIDSF 143 (417)
T ss_dssp HHHHHHHCHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHhhhhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999988 44555555555544
No 78
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.64 E-value=3.7 Score=22.24 Aligned_cols=50 Identities=20% Similarity=0.211 Sum_probs=36.7
Q ss_pred ccchhhhcCC-ChHHHHHHHHHhhC-CceEEEeCCeeEEEecCHHHHHHHHhh
Q 037456 10 IGNFHQWAGA-LPHQALTRLSKQHG-PVMKLQLGELLALVISSPGATQEVLKT 60 (123)
Q Consensus 10 lG~~~~~~~~-~~~~~~~~~~~~~g-~~~~~~~g~~~~v~i~~p~~~~~vl~~ 60 (123)
++|+..-... .....+.++..+|| .+..+ .+++.+|...+.+.++..+++
T Consensus 14 V~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-tgG~AfV~F~~~esA~~A~~~ 65 (96)
T 2diu_A 14 VYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-TGCSAILRFINQDSAERAQKR 65 (96)
T ss_dssp EESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-CTTCEEEEESSHHHHHHHHHH
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-ecCEEEEEECCHHHHHHHHHH
Confidence 7888654222 23455889999995 87777 568889999999999888753
No 79
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=78.18 E-value=6.1 Score=21.24 Aligned_cols=54 Identities=15% Similarity=0.238 Sum_probs=35.9
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC--------CeeEEEecCHHHHHHHHhhCcccc
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG--------ELLALVISSPGATQEVLKTNEISF 65 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g--------~~~~v~i~~p~~~~~vl~~~~~~~ 65 (123)
++|++..- ..-+.+.++..+||++..+.+. +.-+|...+++.++.++..+...+
T Consensus 15 fV~~Lp~~---~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~ 76 (103)
T 1s79_A 15 YIKGFPTD---ATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKY 76 (103)
T ss_dssp EEECCCTT---CCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCC
T ss_pred EEECCCCC---CCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEE
Confidence 35666432 2345677888999998766542 345677889999999986443333
No 80
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=77.11 E-value=6.3 Score=21.51 Aligned_cols=39 Identities=15% Similarity=0.171 Sum_probs=31.6
Q ss_pred hHHHHHHHHHhhCCceEEEeCC-eeEEEecCHHHHHHHHh
Q 037456 21 PHQALTRLSKQHGPVMKLQLGE-LLALVISSPGATQEVLK 59 (123)
Q Consensus 21 ~~~~~~~~~~~~g~~~~~~~g~-~~~v~i~~p~~~~~vl~ 59 (123)
-..-+.++...||.+...|+.- ...+++.+++.+++++.
T Consensus 28 Kt~DI~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 28 KTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp CHHHHHHHHTTTCSCCCEEEETTEEEEECSCHHHHHHHHH
T ss_pred hhHHHHHHhhccCCEEEEEEcCCeEEEEecCHHHHHHHHH
Confidence 3455778889999988888754 56788899999999986
No 81
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=75.42 E-value=7.4 Score=20.77 Aligned_cols=58 Identities=14% Similarity=0.220 Sum_probs=38.5
Q ss_pred cccchhhhcCCC----hHHHHHHHHHhhCCceEEEeC-------CeeEEEecCHHHHHHHHhh-CcccccC
Q 037456 9 SIGNFHQWAGAL----PHQALTRLSKQHGPVMKLQLG-------ELLALVISSPGATQEVLKT-NEISFAQ 67 (123)
Q Consensus 9 ~lG~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~g-------~~~~v~i~~p~~~~~vl~~-~~~~~~~ 67 (123)
++||+..- ... ..+.+.++..+||++..+.+. +.-+|...+++.++..+.. +...+.+
T Consensus 19 ~V~nLp~~-~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 19 VVDNVPQV-GPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp EEESCCCC-CTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred EEeCCCcc-hhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 46777643 211 456788899999998877753 3456777888888888764 3333433
No 82
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=74.67 E-value=6.5 Score=19.75 Aligned_cols=51 Identities=16% Similarity=0.224 Sum_probs=35.4
Q ss_pred cccchhhhcCCC----hHHHHHHHHHhhCCceEEEeC-------CeeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGAL----PHQALTRLSKQHGPVMKLQLG-------ELLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~g-------~~~~v~i~~p~~~~~vl~~ 60 (123)
++||+..- ..+ ..+.+.++..+||++..+.+. +.-+|...+++.++..+..
T Consensus 5 ~V~nLp~~-~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~ 66 (81)
T 2krb_A 5 VVDNVPQV-GPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKN 66 (81)
T ss_dssp EEESCCCC-CTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTT
T ss_pred EEeCCCCC-cHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHH
Confidence 45676543 222 346678889999998877653 3456777899999988864
No 83
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=73.31 E-value=6.6 Score=19.23 Aligned_cols=44 Identities=7% Similarity=0.165 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhCCceEEEeC---------CeeEEEecCHHHHHHHHhhCcccc
Q 037456 22 HQALTRLSKQHGPVMKLQLG---------ELLALVISSPGATQEVLKTNEISF 65 (123)
Q Consensus 22 ~~~~~~~~~~~g~~~~~~~g---------~~~~v~i~~p~~~~~vl~~~~~~~ 65 (123)
.+.+.++..+||++....+. +.-.|...+++.++.++..+...+
T Consensus 13 ~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~ 65 (75)
T 1iqt_A 13 EEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNV 65 (75)
T ss_dssp HHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCB
T ss_pred HHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeE
Confidence 45577888899998766542 234566789999999887644433
No 84
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=60.47 E-value=13 Score=18.04 Aligned_cols=44 Identities=14% Similarity=0.065 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhCCceEEEeC---------CeeEEEecCHHHHHHHHhhCcccc
Q 037456 22 HQALTRLSKQHGPVMKLQLG---------ELLALVISSPGATQEVLKTNEISF 65 (123)
Q Consensus 22 ~~~~~~~~~~~g~~~~~~~g---------~~~~v~i~~p~~~~~vl~~~~~~~ 65 (123)
.+.+.++..+||++....+. +...|...+++.++.++..+...+
T Consensus 13 ~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~ 65 (75)
T 2mss_A 13 VEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEI 65 (75)
T ss_dssp HHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCS
T ss_pred HHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEE
Confidence 45577888999998766542 134566789999998886443333
No 85
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=59.04 E-value=19 Score=19.30 Aligned_cols=51 Identities=10% Similarity=0.146 Sum_probs=34.8
Q ss_pred CCCcccchhhhcCCChHHHHHHHHHhhCCceEEEe---C---CeeEEEecCHHHHHHHHh
Q 037456 6 SLPSIGNFHQWAGALPHQALTRLSKQHGPVMKLQL---G---ELLALVISSPGATQEVLK 59 (123)
Q Consensus 6 ~~p~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---g---~~~~v~i~~p~~~~~vl~ 59 (123)
..-++||+..- -....+.++..+||++..+.+ + +.-+|...+++.++..+.
T Consensus 9 ~~l~V~nlp~~---~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~ 65 (115)
T 3lqv_A 9 RILYIRNLPYK---ITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVD 65 (115)
T ss_dssp SEEEEESCCTT---CCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCC---CCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHH
Confidence 33456777542 234457788899999887765 1 245677889999888875
No 86
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=57.61 E-value=20 Score=19.08 Aligned_cols=49 Identities=8% Similarity=-0.006 Sum_probs=34.9
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC--CeeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG--ELLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g--~~~~v~i~~p~~~~~vl~~ 60 (123)
++||+..- -..+.+.++..+||+|..+.+. +.-+|...+.+.++..+..
T Consensus 19 ~V~nLp~~---~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~ 69 (108)
T 1x4c_A 19 VVSGLPPS---GSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRK 69 (108)
T ss_dssp EEESCCSS---CCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHH
Confidence 45676532 2355678888999998776642 4667888899999888764
No 87
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=57.48 E-value=23 Score=19.82 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=33.9
Q ss_pred cccchhhhcCC-ChHHHHHHHHHhhCCceEEEeC------CeeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGA-LPHQALTRLSKQHGPVMKLQLG------ELLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~g------~~~~v~i~~p~~~~~vl~~ 60 (123)
++||+..-... +....+.++..+||+|..+.+. +.-+|...+.+.+...+..
T Consensus 33 fV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~ 91 (127)
T 2a3j_A 33 LITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEA 91 (127)
T ss_dssp EEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHH
Confidence 45777542121 2233466889999998776652 2456778899988888754
No 88
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=57.13 E-value=28 Score=20.98 Aligned_cols=47 Identities=13% Similarity=0.276 Sum_probs=32.2
Q ss_pred hHHHHHHHHHhhCCceEEEeC--------CeeEEEecCHHHHHHHHhhCcccccC
Q 037456 21 PHQALTRLSKQHGPVMKLQLG--------ELLALVISSPGATQEVLKTNEISFAQ 67 (123)
Q Consensus 21 ~~~~~~~~~~~~g~~~~~~~g--------~~~~v~i~~p~~~~~vl~~~~~~~~~ 67 (123)
..+.+.++..+||++..+.+. +..+|...+.+.++.++......+.+
T Consensus 122 t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~G 176 (193)
T 2voo_A 122 TLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKE 176 (193)
T ss_dssp CHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETT
T ss_pred CHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECC
Confidence 456788899999997765432 23466678999999888654333433
No 89
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.47 E-value=21 Score=19.13 Aligned_cols=42 Identities=12% Similarity=0.105 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhCCceEEEeC---------CeeEEEecCHHHHHHHHhhCcc
Q 037456 22 HQALTRLSKQHGPVMKLQLG---------ELLALVISSPGATQEVLKTNEI 63 (123)
Q Consensus 22 ~~~~~~~~~~~g~~~~~~~g---------~~~~v~i~~p~~~~~vl~~~~~ 63 (123)
-+.+.++..+||.+..+.+. +.-+|...+++.++.++..+..
T Consensus 41 e~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~ 91 (116)
T 1x4b_A 41 EESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPH 91 (116)
T ss_dssp HHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSE
T ss_pred HHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCc
Confidence 45577888999988765541 2456777899999999866433
No 90
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=55.77 E-value=5.6 Score=21.75 Aligned_cols=40 Identities=15% Similarity=0.178 Sum_probs=31.3
Q ss_pred hHHHHHHHHHhhCCceEEEeCC-eeEEEecCHHHHHHHHhh
Q 037456 21 PHQALTRLSKQHGPVMKLQLGE-LLALVISSPGATQEVLKT 60 (123)
Q Consensus 21 ~~~~~~~~~~~~g~~~~~~~g~-~~~v~i~~p~~~~~vl~~ 60 (123)
-..-+.++...||++...|+.- ...+++.+++.+++++..
T Consensus 18 Kt~Di~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 18 KTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp CHHHHHHHTTTSEEEEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred hhHHHHHHHhccCCEEEEEEcCCeEEEEecCHHHHHHHHHh
Confidence 3455677888899888888754 567888999999999863
No 91
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.42 E-value=21 Score=18.72 Aligned_cols=54 Identities=15% Similarity=0.178 Sum_probs=34.4
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC---------CeeEEEecCHHHHHHHHhhCcccc
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG---------ELLALVISSPGATQEVLKTNEISF 65 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g---------~~~~v~i~~p~~~~~vl~~~~~~~ 65 (123)
+++++..- -..+.+.++..+||++..+.+. +.-+|...+++.++.++..+...+
T Consensus 20 ~V~nlp~~---~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~ 82 (105)
T 2dh8_A 20 FVGGLDWS---TTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTL 82 (105)
T ss_dssp CCBSCCTT---CCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEE
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeE
Confidence 45666432 2345577888999988765431 134566789999988887644333
No 92
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=53.77 E-value=21 Score=18.29 Aligned_cols=46 Identities=13% Similarity=0.200 Sum_probs=32.7
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC----CeeEEEecCHHHHHHH
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG----ELLALVISSPGATQEV 57 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g----~~~~v~i~~p~~~~~v 57 (123)
++|++..- -.-+.+.++..+||++....+. +.-+|...+++.++.+
T Consensus 15 ~V~~Lp~~---~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~~ 64 (89)
T 3d2w_A 15 FVGRCTED---MTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSL 64 (89)
T ss_dssp EEESCCTT---CCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHHH
Confidence 45777543 2345677888999998887753 4567778899998854
No 93
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=53.70 E-value=8.1 Score=20.85 Aligned_cols=34 Identities=6% Similarity=0.087 Sum_probs=24.9
Q ss_pred HHHHhhCCceEEEeC------------CeeEEEecCHHHHHHHHhh
Q 037456 27 RLSKQHGPVMKLQLG------------ELLALVISSPGATQEVLKT 60 (123)
Q Consensus 27 ~~~~~~g~~~~~~~g------------~~~~v~i~~p~~~~~vl~~ 60 (123)
++..+||++..+.+. +.-+|...+++.++..+..
T Consensus 37 ~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~ 82 (111)
T 2cpi_A 37 EYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQC 82 (111)
T ss_dssp TTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHH
T ss_pred HHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHH
Confidence 778899998766542 2456677899999888865
No 94
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=53.62 E-value=43 Score=23.18 Aligned_cols=49 Identities=10% Similarity=0.104 Sum_probs=33.0
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC---------CeeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG---------ELLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g---------~~~~v~i~~p~~~~~vl~~ 60 (123)
++|||..- -.-..+.+++.+||.|..+.+. +.-+|.+.+++.+..++..
T Consensus 106 fV~nL~~~---~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ 163 (437)
T 3pgw_S 106 FVARVNYD---TTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKH 163 (437)
T ss_pred EEeCCCCC---CCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHH
Confidence 45676432 2345677888899998766542 2356777899998888754
No 95
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=51.05 E-value=22 Score=17.71 Aligned_cols=50 Identities=18% Similarity=0.153 Sum_probs=32.9
Q ss_pred CCcccchhhhcCCChHHHHHHHHHhhCCceEEEeC---------CeeEEEecCHHHHHHHHh
Q 037456 7 LPSIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG---------ELLALVISSPGATQEVLK 59 (123)
Q Consensus 7 ~p~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g---------~~~~v~i~~p~~~~~vl~ 59 (123)
.-++|++..- -..+.+.++..+||++..+.+. +.-+|...+++.++.++.
T Consensus 7 ~l~v~nlp~~---~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 65 (85)
T 1x4e_A 7 GLYIRGLQPG---TTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVT 65 (85)
T ss_dssp EEEEESCCTT---CCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHH
T ss_pred EEEEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 3356777542 2234567778889998766531 234677789999888875
No 96
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=49.25 E-value=31 Score=18.78 Aligned_cols=48 Identities=8% Similarity=0.127 Sum_probs=33.0
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC---------CeeEEEecCHHHHHHHHh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG---------ELLALVISSPGATQEVLK 59 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g---------~~~~v~i~~p~~~~~vl~ 59 (123)
+++|+..- -..+.+.++..+||.+..+.+. +.-+|...+++.++.++.
T Consensus 26 ~V~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 82 (126)
T 3ex7_B 26 FVTGVHEE---ATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAME 82 (126)
T ss_dssp EEESCCTT---CCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHH
Confidence 45666432 2345577888999998877652 245677889999988875
No 97
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=49.19 E-value=30 Score=18.58 Aligned_cols=49 Identities=8% Similarity=0.081 Sum_probs=33.7
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC---CeeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG---ELLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g---~~~~v~i~~p~~~~~vl~~ 60 (123)
++||+.. .-..+.+.++..+||++..+.+. +..+|...+.+.++..+..
T Consensus 14 ~V~nLp~---~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~ 65 (111)
T 1whx_A 14 LAKNLPA---GTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRH 65 (111)
T ss_dssp EEESCCT---TCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHH
Confidence 3566543 22345678889999999877753 2456777899998887753
No 98
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.03 E-value=26 Score=17.87 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=33.9
Q ss_pred CCcccchhhhcCCChHHHHHHHHHhhCCceEEEeC---------CeeEEEecCHHHHHHHHh
Q 037456 7 LPSIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG---------ELLALVISSPGATQEVLK 59 (123)
Q Consensus 7 ~p~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g---------~~~~v~i~~p~~~~~vl~ 59 (123)
.-+++++..- -..+.+.++..+||.+..+.+. +.-+|...+++.++.++.
T Consensus 7 ~l~v~nlp~~---~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 65 (95)
T 2dnz_A 7 GLYVGSLHFN---ITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 65 (95)
T ss_dssp EEEEESCCTT---CCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHH
T ss_pred EEEEeCCCCC---CCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHH
Confidence 3356777542 2345577888999998766542 135677789999988876
No 99
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=48.59 E-value=31 Score=18.60 Aligned_cols=49 Identities=12% Similarity=0.156 Sum_probs=33.3
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC-------CeeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG-------ELLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g-------~~~~v~i~~p~~~~~vl~~ 60 (123)
++||+..- -.-+.+.++..+||.|..+.+. +.-+|...+++.++..+..
T Consensus 9 fV~nLp~~---~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~ 64 (115)
T 4f25_A 9 FIKNLDKS---IDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEK 64 (115)
T ss_dssp EEESCCTT---CCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHH
T ss_pred EECCCCCC---CCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHH
Confidence 56777542 2345677888999998765431 1346778899999888754
No 100
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=48.38 E-value=25 Score=17.58 Aligned_cols=54 Identities=15% Similarity=0.265 Sum_probs=34.7
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEe------CC---eeEEEecCHHHHHHHHhhCcccc
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQL------GE---LLALVISSPGATQEVLKTNEISF 65 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~------g~---~~~v~i~~p~~~~~vl~~~~~~~ 65 (123)
++|++..- -..+.+.++..+||.+..+.+ +. .-+|...+++.++.++..+...+
T Consensus 15 ~V~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~ 77 (87)
T 3s7r_A 15 FVGGLSWD---TSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRL 77 (87)
T ss_dssp EEECCCTT---CCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEE
T ss_pred EEeCCCCC---CCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEE
Confidence 45776532 234557788899999876654 11 24566789999988886544333
No 101
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=46.59 E-value=31 Score=18.09 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=31.8
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEe------CC---eeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQL------GE---LLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~------g~---~~~v~i~~p~~~~~vl~~ 60 (123)
++||+..- -.-+.+.++..+||++..+.+ +. .-+|...+++.++..+..
T Consensus 23 fV~nLp~~---~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ 80 (99)
T 4fxv_A 23 IVNYLPQN---MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80 (99)
T ss_dssp EEESCCTT---CCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHH
Confidence 45666432 234567788899999876654 11 235667899999888753
No 102
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.93 E-value=33 Score=18.26 Aligned_cols=44 Identities=7% Similarity=0.040 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhCCceEEEeC---------CeeEEEecCHHHHHHHHhhCcccc
Q 037456 22 HQALTRLSKQHGPVMKLQLG---------ELLALVISSPGATQEVLKTNEISF 65 (123)
Q Consensus 22 ~~~~~~~~~~~g~~~~~~~g---------~~~~v~i~~p~~~~~vl~~~~~~~ 65 (123)
.+.+.++..+||.+..+.+. +.-+|...+.+.++.++.-+...+
T Consensus 39 ~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~ 91 (114)
T 2cq4_A 39 PRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRL 91 (114)
T ss_dssp HHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEE
T ss_pred HHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEe
Confidence 45577888999998877653 234566788888887773343333
No 103
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.46 E-value=34 Score=18.27 Aligned_cols=51 Identities=10% Similarity=0.120 Sum_probs=34.4
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeCC---------eeEEEecCHHHHHHHHhhCc
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLGE---------LLALVISSPGATQEVLKTNE 62 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~---------~~~v~i~~p~~~~~vl~~~~ 62 (123)
+++++..- -..+.+.++..+||.|..+.+.. .-+|...+.+.++.++....
T Consensus 21 ~V~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~ 80 (116)
T 2cqd_A 21 FVGGLPYH---TTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN 80 (116)
T ss_dssp EEECCCSS---CCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSS
T ss_pred EEeCCCCC---CCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCC
Confidence 35665432 23455778889999987766532 35677789999999886543
No 104
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=45.39 E-value=37 Score=18.61 Aligned_cols=68 Identities=13% Similarity=0.119 Sum_probs=39.0
Q ss_pred CCCCCCCcccchhhhcC-------CChHHHHHHHHHhhCCceEEEeC-----CeeEEEecCHHHHHHHHhh-CcccccCC
Q 037456 2 PGPKSLPSIGNFHQWAG-------ALPHQALTRLSKQHGPVMKLQLG-----ELLALVISSPGATQEVLKT-NEISFAQR 68 (123)
Q Consensus 2 pgp~~~p~lG~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~g-----~~~~v~i~~p~~~~~vl~~-~~~~~~~~ 68 (123)
|.|...-+|-|+..... .+..+-+.+.+.+||.+..+.+. +.-+|-..+++.++..+.. +...|.+|
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 34444445566654311 12234456778899998877652 3345667788888776643 33445444
Q ss_pred c
Q 037456 69 H 69 (123)
Q Consensus 69 ~ 69 (123)
.
T Consensus 84 ~ 84 (114)
T 3s6e_A 84 M 84 (114)
T ss_dssp E
T ss_pred E
Confidence 3
No 105
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=44.57 E-value=32 Score=17.66 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=33.0
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC------------CeeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG------------ELLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g------------~~~~v~i~~p~~~~~vl~~ 60 (123)
++|++..- -.-+.+.++..+||++..+.+. +.-+|...+++.++.++..
T Consensus 9 ~V~nLp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~ 69 (98)
T 2cpf_A 9 FIKNLNFS---TTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQ 69 (98)
T ss_dssp EEESCCTT---CCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHH
Confidence 56777542 2345577888899987655432 2345667899999988864
No 106
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=44.43 E-value=34 Score=17.85 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=32.0
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC--------CeeEEEecCHHHHHHHHh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG--------ELLALVISSPGATQEVLK 59 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g--------~~~~v~i~~p~~~~~vl~ 59 (123)
++|++..- -..+.+.++..+||.+..+.+. +.-+|...+++.++.++.
T Consensus 19 ~v~nLp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~ 74 (105)
T 2dnh_A 19 FVGMLNKQ---QSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIH 74 (105)
T ss_dssp EEESCCTT---CCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHH
Confidence 45666432 2345577888999998766542 234566789999988875
No 107
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=43.39 E-value=48 Score=19.32 Aligned_cols=54 Identities=9% Similarity=0.075 Sum_probs=35.2
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEe------C---CeeEEEecCHHHHHHHHhhCcccc
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQL------G---ELLALVISSPGATQEVLKTNEISF 65 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~------g---~~~~v~i~~p~~~~~vl~~~~~~~ 65 (123)
++|++..- -.-+.+.++..+||++..+.+ + +.-+|...+++.++..+..+...+
T Consensus 17 ~V~nLp~~---~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~ 79 (196)
T 1l3k_A 17 FIGGLSFE---TTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV 79 (196)
T ss_dssp EEESCCTT---CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEE
T ss_pred EEeCCCCC---CCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEE
Confidence 45666432 234557788899999865543 1 134677889999999987643333
No 108
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=43.35 E-value=35 Score=17.80 Aligned_cols=49 Identities=8% Similarity=0.117 Sum_probs=32.3
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC---------CeeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG---------ELLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g---------~~~~v~i~~p~~~~~vl~~ 60 (123)
++|++..- -..+.+.++..+||++..+.+. +.-+|...+.+.++.++..
T Consensus 27 ~V~nlp~~---~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 84 (106)
T 1p27_B 27 FVTGVHEE---ATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEG 84 (106)
T ss_dssp EEECCCTT---CCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 35666432 2345577888999998766542 2345667899999888753
No 109
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=43.26 E-value=35 Score=17.76 Aligned_cols=49 Identities=18% Similarity=0.214 Sum_probs=33.8
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeCC---------eeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLGE---------LLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~---------~~~v~i~~p~~~~~vl~~ 60 (123)
++|++..- -..+.+.++..+||.+..+.+.. .-+|...+++.++.++..
T Consensus 19 ~V~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 76 (105)
T 1x5u_A 19 YVGGLDEK---VSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 76 (105)
T ss_dssp EEECCCTT---CCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHH
Confidence 45666432 23455788889999987776522 346778899999988864
No 110
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=43.10 E-value=38 Score=18.04 Aligned_cols=51 Identities=16% Similarity=0.145 Sum_probs=34.2
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC---------CeeEEEecCHHHHHHHHhhCc
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG---------ELLALVISSPGATQEVLKTNE 62 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g---------~~~~v~i~~p~~~~~vl~~~~ 62 (123)
++|++..- -.-+.+.++..+||.+..+.+. +.-+|...+.+.++.++....
T Consensus 29 fV~nLp~~---~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~ 88 (109)
T 2rs2_A 29 FIGGLSWQ---TTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 88 (109)
T ss_dssp EEESCCTT---CCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC
T ss_pred EEeCCCCC---CCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC
Confidence 35665422 2345577888999998776652 235677889999998886543
No 111
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=42.24 E-value=36 Score=17.60 Aligned_cols=48 Identities=15% Similarity=0.255 Sum_probs=32.5
Q ss_pred ccchhhhcCCChHHHHHHHHHhhCCceEEEe----CCeeEEEecCHHHHHHHHhh
Q 037456 10 IGNFHQWAGALPHQALTRLSKQHGPVMKLQL----GELLALVISSPGATQEVLKT 60 (123)
Q Consensus 10 lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----g~~~~v~i~~p~~~~~vl~~ 60 (123)
+|++..- -..+.+.++..+||++..+.+ -+.-+|...+++.++.++..
T Consensus 5 V~nLp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~ 56 (101)
T 2hvz_A 5 VGNLGTG---AGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRG 56 (101)
T ss_dssp EECCCSS---CSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHH
T ss_pred EeCCCCC---CCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHH
Confidence 4565432 234557788899999876664 23456777899999888753
No 112
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=42.12 E-value=40 Score=18.01 Aligned_cols=48 Identities=6% Similarity=0.117 Sum_probs=33.5
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC---CeeEEEecCHHHHHHHHh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG---ELLALVISSPGATQEVLK 59 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g---~~~~v~i~~p~~~~~vl~ 59 (123)
++||+..- -.-+.+.++..+||.+..+.+. +.-+|-..+.+.++..+.
T Consensus 19 ~V~nLp~~---~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~ 69 (104)
T 1wex_A 19 HVRGLCES---VVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVT 69 (104)
T ss_dssp EEESCCSS---CCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHH
Confidence 45776432 2345678889999998877652 356777889888887775
No 113
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.57 E-value=38 Score=17.60 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=32.6
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC---------CeeEEEecCHHHHHHHHh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG---------ELLALVISSPGATQEVLK 59 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g---------~~~~v~i~~p~~~~~vl~ 59 (123)
++|++..- -..+.+.++..+||.+..+.+. +.-+|...+++.++.++.
T Consensus 17 ~V~nLp~~---~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 73 (103)
T 2dnm_A 17 KVDNLTYR---TSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEA 73 (103)
T ss_dssp EEESCCTT---CCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHH
Confidence 45666432 2345577888999998877652 234677788888888876
No 114
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.10 E-value=37 Score=17.44 Aligned_cols=39 Identities=8% Similarity=0.130 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhCCceEEEeC---CeeEEEecCHHHHHHHHhh
Q 037456 22 HQALTRLSKQHGPVMKLQLG---ELLALVISSPGATQEVLKT 60 (123)
Q Consensus 22 ~~~~~~~~~~~g~~~~~~~g---~~~~v~i~~p~~~~~vl~~ 60 (123)
-+.+.++..+||.+..+.++ +.-+|...+++.++..+..
T Consensus 27 ~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~ 68 (97)
T 1x5p_A 27 PTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAE 68 (97)
T ss_dssp HHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHH
Confidence 45577888999998877764 3456777899999888754
No 115
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=40.26 E-value=42 Score=17.81 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=33.2
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC---CeeEEEecCHHHHHHHHh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG---ELLALVISSPGATQEVLK 59 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g---~~~~v~i~~p~~~~~vl~ 59 (123)
++||+..- -.-+-+.++..+||.+..+.+. +.-+|-..+.+.++..+.
T Consensus 19 ~V~nLp~~---~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~ 69 (101)
T 2cq1_A 19 HIRKLPGE---VTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVN 69 (101)
T ss_dssp EEESCCTT---CCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHH
Confidence 45776532 2244577888999998776642 356777889988887775
No 116
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=40.16 E-value=44 Score=17.95 Aligned_cols=49 Identities=14% Similarity=0.328 Sum_probs=33.5
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEe------CC---eeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQL------GE---LLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~------g~---~~~v~i~~p~~~~~vl~~ 60 (123)
++||+..- -.-+.+.++..+||.|..+.+ +. .-+|...+++.++..+..
T Consensus 10 fV~nL~~~---~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~ 67 (110)
T 3s8s_A 10 TFARLNDN---VRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKN 67 (110)
T ss_dssp EEESCCTT---CCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEECCCCC---CCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 56777542 234567788899999876654 21 246777899999888753
No 117
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=40.05 E-value=45 Score=18.01 Aligned_cols=49 Identities=18% Similarity=0.333 Sum_probs=33.6
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC--------CeeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG--------ELLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g--------~~~~v~i~~p~~~~~vl~~ 60 (123)
++|++..- -..+.+.++..+||.+..+.+. +.-+|...+.+.++.++..
T Consensus 11 ~V~nLp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~ 67 (116)
T 2fy1_A 11 FIGGLNRE---TNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKD 67 (116)
T ss_dssp EEECCTTT---CCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHH
Confidence 46776532 2345577888999998766542 3456777899999888864
No 118
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=39.68 E-value=54 Score=18.90 Aligned_cols=49 Identities=6% Similarity=0.068 Sum_probs=32.4
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC---------CeeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG---------ELLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g---------~~~~v~i~~p~~~~~vl~~ 60 (123)
++||+..- -....+.++..+||.|..+.+. +.-+|...+.+.++.++..
T Consensus 76 ~V~nLp~~---~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 133 (165)
T 1rk8_A 76 FVTSIHEE---AQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA 133 (165)
T ss_dssp EEESCCTT---CCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHH
Confidence 45666432 2345677888999998766542 2345667899988888753
No 119
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=39.42 E-value=43 Score=17.63 Aligned_cols=48 Identities=6% Similarity=0.066 Sum_probs=33.1
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC---------CeeEEEecCHHHHHHHHh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG---------ELLALVISSPGATQEVLK 59 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g---------~~~~v~i~~p~~~~~vl~ 59 (123)
++|++..- -..+.+.++..+||.+..+.+. +.-+|...+++.++.++.
T Consensus 30 ~V~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~ 86 (110)
T 1oo0_B 30 FVTSIHEE---AQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKE 86 (110)
T ss_dssp EEESCCTT---CCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHH
Confidence 35666432 2345577888999998877652 345677789999988875
No 120
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=38.91 E-value=43 Score=17.46 Aligned_cols=49 Identities=8% Similarity=0.114 Sum_probs=33.5
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeCC----------eeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLGE----------LLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~----------~~~v~i~~p~~~~~vl~~ 60 (123)
++|++..- -..+.+.++..+||++..+.+.. .-+|...+.+.++.++..
T Consensus 19 ~V~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 77 (107)
T 2cph_A 19 LVRNIPFQ---ANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNA 77 (107)
T ss_dssp EEESCCTT---CCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCc---CCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHH
Confidence 45666432 23455778889999988776522 346677899999888764
No 121
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=37.94 E-value=50 Score=17.93 Aligned_cols=49 Identities=18% Similarity=0.152 Sum_probs=33.6
Q ss_pred cccchhhhcCCChHHHHHHHHHhhC-CceEEEeC-----CeeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHG-PVMKLQLG-----ELLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~g-----~~~~v~i~~p~~~~~vl~~ 60 (123)
++||+..- -..+.+.++..+|| .+....+. +.-+|...+.+.++..+..
T Consensus 32 ~VgnLp~~---~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~ 86 (111)
T 2jvr_A 32 TMKNLPEG---CSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALER 86 (111)
T ss_dssp EEECSSCC---CCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHH
T ss_pred EEECCCCC---CCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHH
Confidence 45666432 23456788889999 77666552 3467778899999888754
No 122
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=37.24 E-value=78 Score=19.97 Aligned_cols=56 Identities=9% Similarity=0.181 Sum_probs=36.1
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEe-------CCeeEEEecCHHHHHHHHhhCcccccC
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQL-------GELLALVISSPGATQEVLKTNEISFAQ 67 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-------g~~~~v~i~~p~~~~~vl~~~~~~~~~ 67 (123)
++|++..- -.-+.+.++..+||++..+.+ .+.-+|...+++.++..+..+...+.+
T Consensus 45 ~V~nLp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g 107 (292)
T 2ghp_A 45 LVKNLPKS---YNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQ 107 (292)
T ss_dssp EEEEECTT---CCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETT
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEeCC
Confidence 45666432 234557788899999876553 134567788999999988544333433
No 123
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=37.11 E-value=41 Score=16.69 Aligned_cols=49 Identities=6% Similarity=0.078 Sum_probs=32.4
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC---------CeeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG---------ELLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g---------~~~~v~i~~p~~~~~vl~~ 60 (123)
++|++..- -..+.+.++..+||.+..+.+. +.-+|...+++.++.++..
T Consensus 10 ~v~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 67 (87)
T 3bs9_A 10 FVGDLSPE---ITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 67 (87)
T ss_dssp EEESCCTT---CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 45776532 2345577888999998765541 1345667899999888763
No 124
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.71 E-value=42 Score=16.80 Aligned_cols=47 Identities=15% Similarity=0.192 Sum_probs=32.1
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC----CeeEEEecCHHHHHHHH
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG----ELLALVISSPGATQEVL 58 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g----~~~~v~i~~p~~~~~vl 58 (123)
++|++..- -.-+.+.++..+||++..+.+. +.-+|...+.+.++.+.
T Consensus 9 ~V~nLp~~---~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~ 59 (88)
T 1wf0_A 9 FVGRCTGD---MTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLC 59 (88)
T ss_dssp EEESCCSS---SCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTT
T ss_pred EEeCCCCC---CCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHh
Confidence 45776432 2345577888999998877753 34567788999887653
No 125
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.66 E-value=52 Score=17.80 Aligned_cols=48 Identities=13% Similarity=0.142 Sum_probs=33.9
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC---CeeEEEecCHHHHHHHHh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG---ELLALVISSPGATQEVLK 59 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g---~~~~v~i~~p~~~~~vl~ 59 (123)
++||+..- -.-+-+.++..+||.+..+.+. +.-+|-..+.+.++..+.
T Consensus 20 fV~nLp~~---vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~ 70 (105)
T 1sjq_A 20 HIRKLPID---VTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVN 70 (105)
T ss_dssp EECSCCTT---SCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHH
Confidence 46777542 2234577888999998877653 356777889998888775
No 126
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=36.61 E-value=31 Score=17.90 Aligned_cols=48 Identities=8% Similarity=0.137 Sum_probs=31.1
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC--------CeeEEEecCHHHHHHHHh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG--------ELLALVISSPGATQEVLK 59 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g--------~~~~v~i~~p~~~~~vl~ 59 (123)
++|++..- -..+.+.++..+||.+..+.+. +.-+|...+++.++.++.
T Consensus 13 ~V~nLp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 13 FVGGIDVR---MDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEECCCTT---CCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT
T ss_pred EEeCCCCC---CCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh
Confidence 45666432 2345577888999998766541 234566678888888876
No 127
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.56 E-value=48 Score=17.36 Aligned_cols=57 Identities=11% Similarity=0.095 Sum_probs=36.0
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceE-EEe--------CCeeEEEecCHHHHHHHHhhCcccccCC
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMK-LQL--------GELLALVISSPGATQEVLKTNEISFAQR 68 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~--------g~~~~v~i~~p~~~~~vl~~~~~~~~~~ 68 (123)
++|++..- ..-+.+.++..+||.+.. +.+ -+.-+|...+++.++..+..+...+..|
T Consensus 19 ~V~nLp~~---~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr 84 (104)
T 1wg5_A 19 RLRGLPFG---CSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHR 84 (104)
T ss_dssp EEESCCTT---CCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSS
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCc
Confidence 45666432 234557788888997654 433 1345777889999999987654444333
No 128
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.49 E-value=49 Score=17.42 Aligned_cols=49 Identities=12% Similarity=0.194 Sum_probs=33.4
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEe---CCeeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQL---GELLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---g~~~~v~i~~p~~~~~vl~~ 60 (123)
++|++..- -..+.+.++..+||.+..+.+ -+.-+|...+.+.++.++..
T Consensus 29 ~V~nl~~~---~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~ 80 (109)
T 1x4g_A 29 YCGGIASG---LTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVS 80 (109)
T ss_dssp EEECCSSC---CCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 35666432 234557788889999877765 24567778899998888743
No 129
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=35.26 E-value=57 Score=17.89 Aligned_cols=39 Identities=8% Similarity=0.126 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhCCceEEEeC---------CeeEEEecCHHHHHHHHhh
Q 037456 22 HQALTRLSKQHGPVMKLQLG---------ELLALVISSPGATQEVLKT 60 (123)
Q Consensus 22 ~~~~~~~~~~~g~~~~~~~g---------~~~~v~i~~p~~~~~vl~~ 60 (123)
.+.+.++..+||.+..+.+. +.-+|...+++.++.++..
T Consensus 77 ~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 124 (140)
T 2ku7_A 77 DKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 124 (140)
T ss_dssp HHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 45678888999998877652 2356778899999988853
No 130
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=35.12 E-value=54 Score=17.58 Aligned_cols=49 Identities=8% Similarity=-0.006 Sum_probs=33.8
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC--CeeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG--ELLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g--~~~~v~i~~p~~~~~vl~~ 60 (123)
++||+..- ...+.+.++..+||.|..+.+. +.-+|...+.+.++.++..
T Consensus 20 ~V~nLp~~---~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~ 70 (115)
T 3beg_B 20 VVSGLPPS---GSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRK 70 (115)
T ss_dssp EEEECCSS---CCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHHH
Confidence 45777542 1233466788899998877653 4567778899999888753
No 131
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.03 E-value=53 Score=17.45 Aligned_cols=39 Identities=21% Similarity=0.300 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhCCceEEEeC----CeeEEEecCHHHHHHHHhh
Q 037456 22 HQALTRLSKQHGPVMKLQLG----ELLALVISSPGATQEVLKT 60 (123)
Q Consensus 22 ~~~~~~~~~~~g~~~~~~~g----~~~~v~i~~p~~~~~vl~~ 60 (123)
-+.+.++..+||.|..+.+. +.-+|...+.+.++..+..
T Consensus 31 e~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~ 73 (100)
T 2d9o_A 31 KDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQN 73 (100)
T ss_dssp HHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHh
Confidence 46688899999998877652 2456778899999888865
No 132
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.87 E-value=47 Score=16.78 Aligned_cols=49 Identities=16% Similarity=0.264 Sum_probs=33.9
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeCC-eeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLGE-LLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~-~~~v~i~~p~~~~~vl~~ 60 (123)
++|++..- -..+.+.++..+||++..+.+.. .-+|...+++.++..+..
T Consensus 14 ~V~nLp~~---~t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~ 63 (92)
T 2dgt_A 14 HVGNISPT---CTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRG 63 (92)
T ss_dssp EEESCCSS---CCHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHH
Confidence 45776432 23456778889999987776533 456777899998888753
No 133
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=34.17 E-value=74 Score=18.85 Aligned_cols=48 Identities=17% Similarity=0.151 Sum_probs=33.1
Q ss_pred ccchhhhcCCChHHHHHHHHHhhCCceEEEeC-----CeeEEEecCHHHHHHHHhh
Q 037456 10 IGNFHQWAGALPHQALTRLSKQHGPVMKLQLG-----ELLALVISSPGATQEVLKT 60 (123)
Q Consensus 10 lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g-----~~~~v~i~~p~~~~~vl~~ 60 (123)
+||+..- -..+.+.++..+||.+..+.+. +.-+|-..+.+.++..+..
T Consensus 51 VgNL~~~---vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~ 103 (164)
T 1sjr_A 51 VENLFYP---VTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 103 (164)
T ss_dssp ECSCCSC---CCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHH
T ss_pred EeCcCCC---CCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHH
Confidence 5776432 2345678899999998776652 2456778899988877754
No 134
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=33.93 E-value=58 Score=17.54 Aligned_cols=38 Identities=8% Similarity=0.116 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhCCceEEEeC---------CeeEEEecCHHHHHHHHh
Q 037456 22 HQALTRLSKQHGPVMKLQLG---------ELLALVISSPGATQEVLK 59 (123)
Q Consensus 22 ~~~~~~~~~~~g~~~~~~~g---------~~~~v~i~~p~~~~~vl~ 59 (123)
.+.+.++..+||.+..+.+. +.-+|...+.+.++..+.
T Consensus 50 ~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 96 (124)
T 2jwn_A 50 AQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVA 96 (124)
T ss_dssp HHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHT
T ss_pred HHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHh
Confidence 45577888999988765541 134567789999988884
No 135
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=33.92 E-value=56 Score=17.35 Aligned_cols=49 Identities=16% Similarity=0.135 Sum_probs=31.7
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC---------CeeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG---------ELLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g---------~~~~v~i~~p~~~~~vl~~ 60 (123)
++||+..- -..+.+.++..+||.+..+.+. +.-+|...+.+.++.++..
T Consensus 29 ~V~nLp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 86 (115)
T 2cpz_A 29 FIYHLPQE---FGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 86 (115)
T ss_dssp EEESCCSS---CCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHH
Confidence 45666432 2345677888999987665431 1245667899999888753
No 136
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.86 E-value=49 Score=16.70 Aligned_cols=49 Identities=8% Similarity=0.215 Sum_probs=32.2
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEe------CC---eeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQL------GE---LLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~------g~---~~~v~i~~p~~~~~vl~~ 60 (123)
+++++..- -..+.+.++..+||++..+.+ +. .-+|...+++.++.++..
T Consensus 19 ~v~nlp~~---~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 76 (95)
T 2cqc_A 19 GVFGLSLY---TTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 76 (95)
T ss_dssp EEESCCSS---CCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHH
T ss_pred EEECCCCC---CCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHH
Confidence 35666432 234557888899999876654 12 245667899999888763
No 137
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.72 E-value=49 Score=16.63 Aligned_cols=48 Identities=21% Similarity=0.290 Sum_probs=33.7
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEe-CCeeEEEecCHHHHHHHHh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQL-GELLALVISSPGATQEVLK 59 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-g~~~~v~i~~p~~~~~vl~ 59 (123)
++|++..- -..+.+.++..+||++..+.+ -+.-+|...+++.++.++.
T Consensus 12 ~V~nlp~~---~t~~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~A~~ 60 (90)
T 2dnq_A 12 FIGNLPRE---ATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIR 60 (90)
T ss_dssp EEESCCSS---CCHHHHHHHHHTSSCEEEEEEETTEEEEEESSHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHhCCCEEEEEEECCEEEEEECCHHHHHHHHH
Confidence 45776432 234557788899999877664 3456777889999988874
No 138
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=33.38 E-value=54 Score=17.03 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=32.6
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeCC---------eeEEEecCHHHHHHHHh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLGE---------LLALVISSPGATQEVLK 59 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~---------~~~v~i~~p~~~~~vl~ 59 (123)
++|++..- -..+.+.++..+||.+..+.+.. .-+|...+.+.++.++.
T Consensus 17 ~V~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 73 (106)
T 2dgp_A 17 FIGQIPRN---LDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQS 73 (106)
T ss_dssp EEESCCTT---CCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHH
Confidence 45666432 23456778889999987776522 35667789999888875
No 139
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.15 E-value=51 Score=16.64 Aligned_cols=49 Identities=16% Similarity=0.259 Sum_probs=33.5
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeCC---------eeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLGE---------LLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~---------~~~v~i~~p~~~~~vl~~ 60 (123)
+++++..- -..+.+.++..+||++..+.+.. .-+|...+++.++.++..
T Consensus 20 ~V~nlp~~---~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 77 (94)
T 2e5h_A 20 YVSNLPFS---LTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRA 77 (94)
T ss_dssp EEESCCTT---SCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHH
T ss_pred EEECCCCC---CCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHH
Confidence 45666532 23455778889999987766522 356778899999888853
No 140
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=32.93 E-value=81 Score=18.93 Aligned_cols=49 Identities=16% Similarity=0.352 Sum_probs=33.0
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEe------CC---eeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQL------GE---LLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~------g~---~~~v~i~~p~~~~~vl~~ 60 (123)
++||+..- -.-+.+.++..+||+|..+.+ +. .-+|...+++.++..+..
T Consensus 19 fVgnLp~~---~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~ 76 (213)
T 4f02_A 19 YVGDLHPD---VTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 76 (213)
T ss_dssp EEESCCTT---CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHH
Confidence 46777532 224567788899999876653 11 346677899999888754
No 141
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=32.88 E-value=65 Score=17.80 Aligned_cols=49 Identities=8% Similarity=0.191 Sum_probs=33.1
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC---------CeeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG---------ELLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g---------~~~~v~i~~p~~~~~vl~~ 60 (123)
++|++..- -.-+.+.++..+||++..+.+. +.-+|...+++.++.++..
T Consensus 50 ~V~nLp~~---~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~ 107 (129)
T 2kxn_B 50 GVFGLSLY---TTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 107 (129)
T ss_dssp CEETCTTS---CCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 45666432 2244577888999998776642 2346677899999888763
No 142
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=32.87 E-value=63 Score=17.64 Aligned_cols=39 Identities=8% Similarity=0.130 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhCCceEEEeC---CeeEEEecCHHHHHHHHhh
Q 037456 22 HQALTRLSKQHGPVMKLQLG---ELLALVISSPGATQEVLKT 60 (123)
Q Consensus 22 ~~~~~~~~~~~g~~~~~~~g---~~~~v~i~~p~~~~~vl~~ 60 (123)
-+.+.++..+||.|..+.+. +..+|...+.+.++..+..
T Consensus 51 e~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~ 92 (121)
T 2bz2_A 51 PTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAE 92 (121)
T ss_dssp HHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHH
T ss_pred HHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 45677888999988766553 3456777888888887743
No 143
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.50 E-value=55 Score=16.81 Aligned_cols=49 Identities=18% Similarity=0.222 Sum_probs=32.3
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC--------CeeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG--------ELLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g--------~~~~v~i~~p~~~~~vl~~ 60 (123)
+++++..- -..+.+.++..+||++..+.+. +.-+|...+++.++.++..
T Consensus 21 ~v~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 77 (100)
T 2do4_A 21 FISGLPFS---CTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMK 77 (100)
T ss_dssp EEESCCTT---CCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHH
Confidence 45665432 2345577888899998766542 2346667899999888754
No 144
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.18 E-value=55 Score=16.76 Aligned_cols=54 Identities=9% Similarity=0.097 Sum_probs=35.3
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC---------CeeEEEecCHHHHHHHHhhCcccc
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG---------ELLALVISSPGATQEVLKTNEISF 65 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g---------~~~~v~i~~p~~~~~vl~~~~~~~ 65 (123)
++|++..- -..+.+.++..+||.+..+.+. +.-+|...+.+.++.++..+...+
T Consensus 14 ~V~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~ 76 (99)
T 2dgs_A 14 FVGGIPHN---CGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDI 76 (99)
T ss_dssp EEESCCSS---CCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBS
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEE
Confidence 45666432 2345577888899998776652 235677789999988886443333
No 145
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=32.07 E-value=61 Score=17.20 Aligned_cols=49 Identities=8% Similarity=0.209 Sum_probs=33.5
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEe-CCeeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQL-GELLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-g~~~~v~i~~p~~~~~vl~~ 60 (123)
++||+..- -..+.+.++..+||.+..+.+ -+..+|...+.+.++.++..
T Consensus 35 ~V~nLp~~---~t~~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~A~~Ai~~ 84 (108)
T 2jvo_A 35 FVRPFPLD---VQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEE 84 (108)
T ss_dssp EECSSCTT---CCHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHH
T ss_pred EEECCCCC---CCHHHHHHHHHhcCCEEEEEEECCEEEEEECCHHHHHHHHHH
Confidence 35665432 224557788899998876654 45667778899999888753
No 146
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=31.80 E-value=53 Score=16.47 Aligned_cols=49 Identities=12% Similarity=0.115 Sum_probs=32.5
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC-------CeeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG-------ELLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g-------~~~~v~i~~p~~~~~vl~~ 60 (123)
+++++..- -..+.+.++..+||++..+.+. +.-+|...+.+.++.++..
T Consensus 12 ~V~nlp~~---~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~ 67 (92)
T 2dgv_A 12 FVRNLPFD---FTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRM 67 (92)
T ss_dssp EECSCCTT---CCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHH
Confidence 45777532 2345677888999987765532 2345667899998888753
No 147
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=31.53 E-value=77 Score=18.25 Aligned_cols=39 Identities=23% Similarity=0.479 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhC--CceEEEe------CC---eeEEEecCHHHHHHHHhh
Q 037456 22 HQALTRLSKQHG--PVMKLQL------GE---LLALVISSPGATQEVLKT 60 (123)
Q Consensus 22 ~~~~~~~~~~~g--~~~~~~~------g~---~~~v~i~~p~~~~~vl~~ 60 (123)
-+.+.++..+|| .+..+.+ |. .-+|...+.+.++.++..
T Consensus 69 e~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~ 118 (156)
T 3n9u_C 69 DQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLEL 118 (156)
T ss_dssp HHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 455778889999 7776554 11 346677899999988865
No 148
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.99 E-value=60 Score=16.78 Aligned_cols=49 Identities=10% Similarity=0.200 Sum_probs=31.9
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeCC---------eeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLGE---------LLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~---------~~~v~i~~p~~~~~vl~~ 60 (123)
++|++..- -.-+.+.++..+||++..+.+.. .-+|...+.+.++.++..
T Consensus 19 ~V~nlp~~---~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 76 (103)
T 2cq0_A 19 RVTNLSED---TRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAG 76 (103)
T ss_dssp EEESCCTT---CCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 45666432 22445677888999887665421 245667899999888863
No 149
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.81 E-value=60 Score=16.76 Aligned_cols=49 Identities=12% Similarity=0.200 Sum_probs=32.2
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC-------CeeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG-------ELLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g-------~~~~v~i~~p~~~~~vl~~ 60 (123)
++|++..- -..+.+.++..+||.+..+.+. +.-+|...+++.++.++..
T Consensus 19 ~V~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~ 74 (103)
T 2d9p_A 19 YVKNLDDG---IDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTE 74 (103)
T ss_dssp EEECCCTT---CCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHH
Confidence 45666432 2235577888899998766542 1345667899999888763
No 150
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.68 E-value=64 Score=17.05 Aligned_cols=39 Identities=8% Similarity=0.181 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhCCceEEEeC-------CeeEEEecCHHHHHHHHhh
Q 037456 22 HQALTRLSKQHGPVMKLQLG-------ELLALVISSPGATQEVLKT 60 (123)
Q Consensus 22 ~~~~~~~~~~~g~~~~~~~g-------~~~~v~i~~p~~~~~vl~~ 60 (123)
.+.+.++..+||.+..+.+. +.-+|...+.+.++.++..
T Consensus 43 e~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~ 88 (109)
T 2err_A 43 DPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREK 88 (109)
T ss_dssp HHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHH
Confidence 45577888999988766652 3456777888888887753
No 151
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=30.67 E-value=76 Score=17.93 Aligned_cols=47 Identities=17% Similarity=0.171 Sum_probs=31.5
Q ss_pred ccchhhhcCCChHHHHHHHHHhhCCceEEEeCC-----eeEEEecCHHHHHHHHh
Q 037456 10 IGNFHQWAGALPHQALTRLSKQHGPVMKLQLGE-----LLALVISSPGATQEVLK 59 (123)
Q Consensus 10 lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~-----~~~v~i~~p~~~~~vl~ 59 (123)
+||+..- -..+.+.++..+||.+..+.+.. .-+|...+++.++..+.
T Consensus 33 V~NL~~~---vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~ 84 (130)
T 3zzy_A 33 VENLFYP---VTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKL 84 (130)
T ss_dssp EESCCSC---CCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHH
T ss_pred ECCCCCC---CCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHH
Confidence 5666432 23456788999999987665422 25677788888877764
No 152
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.58 E-value=60 Score=16.72 Aligned_cols=49 Identities=14% Similarity=0.182 Sum_probs=31.9
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC---------CeeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG---------ELLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g---------~~~~v~i~~p~~~~~vl~~ 60 (123)
++|++..- -..+.+.++..+||.+..+.+. +.-+|...+.+.++.++..
T Consensus 12 ~V~nlp~~---~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 69 (104)
T 1p1t_A 12 FVGNIPYE---ATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 69 (104)
T ss_dssp EEESCCTT---SCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHH
T ss_pred EEeCCCCc---CCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHH
Confidence 45666432 2345577888899987665432 2345667899999988853
No 153
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=30.29 E-value=66 Score=17.03 Aligned_cols=48 Identities=17% Similarity=0.268 Sum_probs=31.7
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC---------CeeEEEecCHHHHHHHHh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG---------ELLALVISSPGATQEVLK 59 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g---------~~~~v~i~~p~~~~~vl~ 59 (123)
++|++..- -..+.+.++..+||++..+.+. +..+|...+++.++.++.
T Consensus 30 ~V~nLp~~---~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~ 86 (108)
T 2jrs_A 30 YVGSLHFN---ITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 86 (108)
T ss_dssp EEECCCSS---CCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHH
Confidence 35666432 2345577888999988765532 134566789999988875
No 154
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.20 E-value=63 Score=16.85 Aligned_cols=49 Identities=10% Similarity=0.044 Sum_probs=33.8
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCC-ceEEEeC----------CeeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGP-VMKLQLG----------ELLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~g----------~~~~v~i~~p~~~~~vl~~ 60 (123)
++|++..- -..+.+.++..+||. +..+.+. +..+|...+++.++..+..
T Consensus 12 ~V~nLp~~---~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 71 (109)
T 2dis_A 12 FIGGIPKM---KKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRK 71 (109)
T ss_dssp EEECCCTT---SCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTT
T ss_pred EEeCCCCc---CCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHH
Confidence 45776432 234567788899998 7776653 2456777899999988864
No 155
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=30.06 E-value=79 Score=17.88 Aligned_cols=49 Identities=12% Similarity=0.251 Sum_probs=33.0
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEe------CC---eeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQL------GE---LLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~------g~---~~~v~i~~p~~~~~vl~~ 60 (123)
+++++..- -..+.+.++..+||.|..+.+ +. .-+|...+++.++.++..
T Consensus 43 ~V~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~ 100 (156)
T 1h2v_Z 43 YVGNLSFY---TTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100 (156)
T ss_dssp EEESCCTT---CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 45665432 234557888899999877665 21 346667899999988864
No 156
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=29.93 E-value=58 Score=17.79 Aligned_cols=49 Identities=10% Similarity=0.175 Sum_probs=32.8
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC---CeeEEEecCHHHHHHHHh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG---ELLALVISSPGATQEVLK 59 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g---~~~~v~i~~p~~~~~vl~ 59 (123)
++||+..- .-.-+-+.++..+||.+..+.+. +.-+|-..+.+.++..+.
T Consensus 29 ~V~NLp~~--~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~ 80 (112)
T 1x4f_A 29 HLSNLPHS--GYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVD 80 (112)
T ss_dssp EEESCCCS--SCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHH
T ss_pred EEeCCCCc--cCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHH
Confidence 45776531 01224467888999998877753 346777789988887775
No 157
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=29.87 E-value=62 Score=16.63 Aligned_cols=49 Identities=12% Similarity=0.158 Sum_probs=32.3
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC---CeeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG---ELLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g---~~~~v~i~~p~~~~~vl~~ 60 (123)
++|++..- -..+.+.++..+||.+..+.+. +.-+|...+.+.++.++..
T Consensus 31 ~V~nlp~~---~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~ 82 (101)
T 2la4_A 31 YIGNIPHF---ATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVA 82 (101)
T ss_dssp EEESCCTT---CCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHH
T ss_pred EEcCCCcc---cCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHH
Confidence 34665432 2345677888999998776652 3456677888888877743
No 158
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.85 E-value=62 Score=16.63 Aligned_cols=49 Identities=8% Similarity=0.136 Sum_probs=32.8
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeCC---------eeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLGE---------LLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~---------~~~v~i~~p~~~~~vl~~ 60 (123)
+++++..- -..+.+.++..+||++..+.+.. .-+|...+++.++.++..
T Consensus 16 ~v~nLp~~---~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 73 (102)
T 1x5s_A 16 FVGGLSFD---TNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 73 (102)
T ss_dssp EEESCCTT---CCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHH
T ss_pred EEECCCCC---CCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHH
Confidence 45666432 23455778888999987766532 345667899999888743
No 159
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=29.84 E-value=60 Score=16.46 Aligned_cols=52 Identities=10% Similarity=0.221 Sum_probs=34.4
Q ss_pred cccchhhhcC-CChHHHHHHHHHhhCCceEEEeC------CeeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAG-ALPHQALTRLSKQHGPVMKLQLG------ELLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~g------~~~~v~i~~p~~~~~vl~~ 60 (123)
++||+..-.. .+....+.++..+||++..+.+. +.-+|...+++.++..+..
T Consensus 12 ~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~ 70 (97)
T 1nu4_A 12 YINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 70 (97)
T ss_dssp EEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 4677754311 12223445889999998877653 4467778899998888753
No 160
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=29.40 E-value=62 Score=16.50 Aligned_cols=49 Identities=16% Similarity=0.140 Sum_probs=33.6
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeCC---eeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLGE---LLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~---~~~v~i~~p~~~~~vl~~ 60 (123)
++|++..- -..+.+.++..+||.+..+.+.. ..+|...+.+.++.++..
T Consensus 21 ~V~nlp~~---~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~ 72 (97)
T 1why_A 21 WVGGLGPN---TSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAK 72 (97)
T ss_dssp EEECCCSS---CCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 45666432 23455778889999988776533 456777899998888753
No 161
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.33 E-value=77 Score=17.52 Aligned_cols=48 Identities=13% Similarity=0.142 Sum_probs=33.2
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC---CeeEEEecCHHHHHHHHh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG---ELLALVISSPGATQEVLK 59 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g---~~~~v~i~~p~~~~~vl~ 59 (123)
++||+..- -.-+-+.++..+||.|..+.+. +.-+|-..+.+.++.++.
T Consensus 35 fVgNLp~~---vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~ 85 (119)
T 2ad9_A 35 HIRKLPID---VTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVN 85 (119)
T ss_dssp EEESCCTT---CCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHH
Confidence 45776542 2234577889999998776643 356777788888887775
No 162
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.32 E-value=64 Score=16.64 Aligned_cols=49 Identities=8% Similarity=0.171 Sum_probs=33.2
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC-------CeeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG-------ELLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g-------~~~~v~i~~p~~~~~vl~~ 60 (123)
+++++..- -..+.+.++..+||.+..+.+. +.-+|...+.+.++.++..
T Consensus 19 ~V~nlp~~---~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~ 74 (103)
T 2cq3_A 19 HVSNIPFR---FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREK 74 (103)
T ss_dssp EEESCCTT---CCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHH
Confidence 45666432 2344577888999998776542 3456778899999888753
No 163
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=29.27 E-value=68 Score=16.93 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=33.2
Q ss_pred CCcccchhhhcCCChHHHHHHHHHhhCCceEEEeC---CeeEEEecCHHHHHHHHh
Q 037456 7 LPSIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG---ELLALVISSPGATQEVLK 59 (123)
Q Consensus 7 ~p~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g---~~~~v~i~~p~~~~~vl~ 59 (123)
|-++||+..- ---+.+.+++.+||++..+++. +.-+|-..+++.++...+
T Consensus 9 wL~VgNL~~~---~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~ 61 (89)
T 2wbr_A 9 WLLLKNLTAQ---IDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQM 61 (89)
T ss_dssp EEEEECCCTT---CCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred eEEEeCCCcc---CCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHH
Confidence 4456887432 2235678999999999877642 345666778877766654
No 164
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.15 E-value=64 Score=16.52 Aligned_cols=51 Identities=14% Similarity=0.135 Sum_probs=33.1
Q ss_pred cccchhhhcC-CChHHHHHHHHHhhCCceEEEeC------CeeEEEecCHHHHHHHHh
Q 037456 9 SIGNFHQWAG-ALPHQALTRLSKQHGPVMKLQLG------ELLALVISSPGATQEVLK 59 (123)
Q Consensus 9 ~lG~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~g------~~~~v~i~~p~~~~~vl~ 59 (123)
++||+..-.. .+....+.++..+||.+..+.+. +.-+|...+++.++..+.
T Consensus 13 ~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~ 70 (96)
T 2dgx_A 13 QVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVN 70 (96)
T ss_dssp EEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHH
Confidence 4577754311 12223344888999998877653 335677789999888875
No 165
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.14 E-value=70 Score=17.02 Aligned_cols=54 Identities=4% Similarity=-0.038 Sum_probs=33.8
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCc-eEEEe--------CCeeEEEecCHHHHHHHHhhCcccc
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPV-MKLQL--------GELLALVISSPGATQEVLKTNEISF 65 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~--------g~~~~v~i~~p~~~~~vl~~~~~~~ 65 (123)
++||+..- -.-+.+.++..+||.+ ..+.+ -+.-+|...+.+.++..+..+...+
T Consensus 19 ~V~nLp~~---~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~ 81 (114)
T 2cpy_A 19 HITNIPFS---ITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKL 81 (114)
T ss_dssp EEESCCTT---SCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEE
T ss_pred EEeCcCCc---CCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCcc
Confidence 45666432 2244577788889987 33332 1245677889999999886644433
No 166
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.80 E-value=65 Score=16.54 Aligned_cols=49 Identities=8% Similarity=0.154 Sum_probs=32.6
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC---------CeeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG---------ELLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g---------~~~~v~i~~p~~~~~vl~~ 60 (123)
++|++..- -..+.+.++..+||.+..+.+. +.-+|...+++.++.++..
T Consensus 16 ~V~nLp~~---~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 73 (102)
T 2cqb_A 16 YVGGLAEE---VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 73 (102)
T ss_dssp EEESCCSS---CCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 45776432 2345677888999988776652 1345667899999888753
No 167
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=28.05 E-value=69 Score=16.58 Aligned_cols=49 Identities=8% Similarity=0.145 Sum_probs=34.2
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC-CeeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG-ELLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g-~~~~v~i~~p~~~~~vl~~ 60 (123)
+++++..- -..+.+.++..+||.+..+.+. +.-+|...+++.++..+..
T Consensus 15 ~V~nl~~~---~t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~ 64 (103)
T 2dgu_A 15 FVRNLANT---VTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEE 64 (103)
T ss_dssp EEECCCTT---CCHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHH
Confidence 45666432 2345577888999998877653 3456778899999888763
No 168
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=28.04 E-value=69 Score=16.59 Aligned_cols=51 Identities=18% Similarity=0.267 Sum_probs=34.1
Q ss_pred cccchhhhcC---CChHHHHHHHHHhhCCceEEEeC---------CeeEEEecCHHHHHHHHh
Q 037456 9 SIGNFHQWAG---ALPHQALTRLSKQHGPVMKLQLG---------ELLALVISSPGATQEVLK 59 (123)
Q Consensus 9 ~lG~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~g---------~~~~v~i~~p~~~~~vl~ 59 (123)
++||++.... ......+.++..+||++..+.+. +.-+|...+++.++..+.
T Consensus 10 fV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~ 72 (100)
T 3ns6_A 10 VVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIK 72 (100)
T ss_dssp EEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHH
T ss_pred EEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHH
Confidence 5677765311 12235677888999998877652 235677889999988875
No 169
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=27.73 E-value=61 Score=15.88 Aligned_cols=48 Identities=8% Similarity=0.154 Sum_probs=32.7
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC---------CeeEEEecCHHHHHHHHh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG---------ELLALVISSPGATQEVLK 59 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g---------~~~~v~i~~p~~~~~vl~ 59 (123)
++|++..- -..+.+.++..+||++..+.+. +.-+|...+++.++.++.
T Consensus 11 ~V~nl~~~---~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 67 (85)
T 3mdf_A 11 YVGGLAEE---VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 67 (85)
T ss_dssp EEECCCTT---CCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHH
T ss_pred EEECCCCC---CCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHH
Confidence 46776532 2345677888999998776642 234667789999988874
No 170
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.48 E-value=68 Score=16.34 Aligned_cols=49 Identities=8% Similarity=0.225 Sum_probs=32.5
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCce-EEEeC---------CeeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVM-KLQLG---------ELLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~g---------~~~~v~i~~p~~~~~vl~~ 60 (123)
++|++..- -..+.+.++..+||++. .+.+. +.-+|...+++.++.++..
T Consensus 13 ~V~nLp~~---~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 71 (99)
T 2div_A 13 WMGDLEPY---MDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHK 71 (99)
T ss_dssp EECSCCTT---CCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHT
T ss_pred EEeCCCCC---CCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHH
Confidence 46777532 23455778889999877 55431 1345667899999888863
No 171
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.39 E-value=71 Score=16.47 Aligned_cols=48 Identities=15% Similarity=0.154 Sum_probs=32.6
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC-------CeeEEEecCHHHHHHHHh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG-------ELLALVISSPGATQEVLK 59 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g-------~~~~v~i~~p~~~~~vl~ 59 (123)
++|++..- -..+.+.++..+||++..+.+. +.-+|...+++.++.++.
T Consensus 19 ~V~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~ 73 (103)
T 2cqi_A 19 YVGNLSRD---VTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALA 73 (103)
T ss_dssp EEESCCTT---CCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHH
T ss_pred EEeCCCcc---CCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHH
Confidence 45666432 2345677888999998766542 245677789999988875
No 172
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=27.38 E-value=76 Score=16.85 Aligned_cols=47 Identities=15% Similarity=0.167 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhCCceEEEeC-----------CeeEEEecCHHHHHHHHhh-CcccccCC
Q 037456 22 HQALTRLSKQHGPVMKLQLG-----------ELLALVISSPGATQEVLKT-NEISFAQR 68 (123)
Q Consensus 22 ~~~~~~~~~~~g~~~~~~~g-----------~~~~v~i~~p~~~~~vl~~-~~~~~~~~ 68 (123)
.+-+.+.+.+||.+..+.+. +.-+|...+++.++..+.. +...|.+|
T Consensus 29 ~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR 87 (105)
T 3v4m_A 29 VEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANR 87 (105)
T ss_dssp HHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred HHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCC
Confidence 34567788899998877753 2345667899888777643 33445444
No 173
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=27.33 E-value=77 Score=16.86 Aligned_cols=64 Identities=13% Similarity=-0.007 Sum_probs=36.7
Q ss_pred CCCcccchhhh--cCCChHHHHHHHHHhhCCceEEEeC----------CeeEEEecCHHHHHHHHhh-CcccccCCc
Q 037456 6 SLPSIGNFHQW--AGALPHQALTRLSKQHGPVMKLQLG----------ELLALVISSPGATQEVLKT-NEISFAQRH 69 (123)
Q Consensus 6 ~~p~lG~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~g----------~~~~v~i~~p~~~~~vl~~-~~~~~~~~~ 69 (123)
..-++.|+... ...+..+-+.+.+.+||.+..+.+. +.-+|...+++.+...... +...|.+|.
T Consensus 9 ~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 9 KVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 34456676531 0123456677888999998766531 1235667788888777643 334454443
No 174
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=27.11 E-value=78 Score=16.86 Aligned_cols=49 Identities=12% Similarity=0.116 Sum_probs=34.1
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeCC---eeEEEecCHHHHHHHHh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLGE---LLALVISSPGATQEVLK 59 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~---~~~v~i~~p~~~~~vl~ 59 (123)
++||+..- .-.-+-+.++..+||.|..+.+.. .-+|-..+.+.++.++.
T Consensus 19 ~V~nLp~~--~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~ 70 (102)
T 1x4d_A 19 HIMDFQRG--KNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVD 70 (102)
T ss_dssp EEESCCCS--SSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHH
T ss_pred EEeCCCCC--cCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHH
Confidence 45777530 223455778889999988877643 45777889998887775
No 175
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=26.85 E-value=90 Score=17.49 Aligned_cols=46 Identities=20% Similarity=0.233 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhCCceEEEeCC---------eeEEEecCHHHHHHHHhhCcccccC
Q 037456 22 HQALTRLSKQHGPVMKLQLGE---------LLALVISSPGATQEVLKTNEISFAQ 67 (123)
Q Consensus 22 ~~~~~~~~~~~g~~~~~~~g~---------~~~v~i~~p~~~~~vl~~~~~~~~~ 67 (123)
.+.+.++..+||.+..+.+.. .-+|-..+++.+..++..+...+.+
T Consensus 101 ~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g 155 (167)
T 2cjk_A 101 PKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKD 155 (167)
T ss_dssp HHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSS
T ss_pred HHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCC
Confidence 455778888999987766422 3456678999999888644433433
No 176
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=26.41 E-value=72 Score=16.21 Aligned_cols=48 Identities=13% Similarity=0.235 Sum_probs=32.6
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC---------CeeEEEecCHHHHHHHHh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG---------ELLALVISSPGATQEVLK 59 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g---------~~~~v~i~~p~~~~~vl~ 59 (123)
++|++..- -..+.+.++..+||++..+.+. +..+|...+.+.++.++.
T Consensus 6 ~V~nLp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~ 62 (96)
T 2x1f_A 6 YLGSIPYD---QTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVR 62 (96)
T ss_dssp EEESCCTT---CCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHH
T ss_pred EEECCCCC---CCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHH
Confidence 45666432 2245577888999998877652 235667789999988875
No 177
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.30 E-value=69 Score=16.02 Aligned_cols=48 Identities=15% Similarity=0.219 Sum_probs=33.7
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeCC-eeEEEecCHHHHHHHHh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLGE-LLALVISSPGATQEVLK 59 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~-~~~v~i~~p~~~~~vl~ 59 (123)
++|++..- -..+.+.++..+||++..+.+.. .-+|...+++.++.++.
T Consensus 13 ~V~nlp~~---~t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~ 61 (90)
T 2dnp_A 13 FVGNVSAA---CTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIA 61 (90)
T ss_dssp EEESCCTT---CCHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHH
Confidence 46777542 23455778888999988776533 45677889999888875
No 178
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.27 E-value=75 Score=16.37 Aligned_cols=49 Identities=6% Similarity=-0.046 Sum_probs=32.7
Q ss_pred cccchhhhcCCChHHHHHHHHHh-hCCceEEEeC--------CeeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQ-HGPVMKLQLG--------ELLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~g--------~~~~v~i~~p~~~~~vl~~ 60 (123)
++||+..- -..+.+.++..+ ||.+..+.+. +.-+|...+.+.++.++..
T Consensus 13 ~V~nLp~~---~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 70 (104)
T 2dhg_A 13 FVGDLTPD---VDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTE 70 (104)
T ss_dssp EEECCCTT---CCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHH
Confidence 46777543 224457778888 9988766541 1345667899999888864
No 179
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.24 E-value=81 Score=16.76 Aligned_cols=39 Identities=15% Similarity=0.153 Sum_probs=28.3
Q ss_pred hHHHHHHHHHhhCCceEEEeCC-eeEEEecCHHHHHHHHh
Q 037456 21 PHQALTRLSKQHGPVMKLQLGE-LLALVISSPGATQEVLK 59 (123)
Q Consensus 21 ~~~~~~~~~~~~g~~~~~~~g~-~~~v~i~~p~~~~~vl~ 59 (123)
....+.+...+||.+...++.. ...|...+.+.+..++.
T Consensus 28 l~~~L~~~F~~~G~Vi~vr~~~d~~fVtF~d~~sAlaAi~ 67 (91)
T 2dnr_A 28 LIDELLQQFASFGEVILIRFVEDKMWVTFLEGSSALNVLS 67 (91)
T ss_dssp HHHHHHHHHHTTCCEEEEEECSSSEEEEESSHHHHHHGGG
T ss_pred HHHHHHHHHHhCCCeEEEEEecCCEEEEECChHHHHHHHh
Confidence 4455777788899988777533 45677788888877764
No 180
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=25.63 E-value=97 Score=17.45 Aligned_cols=48 Identities=10% Similarity=0.192 Sum_probs=32.7
Q ss_pred ccchhhhcCCChHHHHHHHHHhhCCceEEEeCC---------eeEEEecCHHHHHHHHhh
Q 037456 10 IGNFHQWAGALPHQALTRLSKQHGPVMKLQLGE---------LLALVISSPGATQEVLKT 60 (123)
Q Consensus 10 lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~---------~~~v~i~~p~~~~~vl~~ 60 (123)
+|++..- -.-+.+.++..+||.+..+.+.. .-+|...+.+.++..+..
T Consensus 75 v~nl~~~---~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 131 (158)
T 2kn4_A 75 VDNLTYR---TSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 131 (158)
T ss_dssp EESCCTT---CCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHH
T ss_pred EeCCCCC---CCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 4555432 23455778889999987776532 346777899999988864
No 181
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.40 E-value=78 Score=16.29 Aligned_cols=49 Identities=14% Similarity=0.138 Sum_probs=32.7
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEe------CC---eeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQL------GE---LLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~------g~---~~~v~i~~p~~~~~vl~~ 60 (123)
+++|+..- -..+.+.++..+||++..+.+ +. .-+|...+.+.++.++.+
T Consensus 19 ~v~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 19 IVLGLPWK---TTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp EEESCCSS---CCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS
T ss_pred EEEcCCCc---CCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc
Confidence 45666432 234557788899999876554 11 345667899999998874
No 182
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.20 E-value=75 Score=16.07 Aligned_cols=50 Identities=18% Similarity=0.318 Sum_probs=32.9
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeCC----eeEEEecCHHHHHHHHhhC
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLGE----LLALVISSPGATQEVLKTN 61 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~----~~~v~i~~p~~~~~vl~~~ 61 (123)
++||+..- -..+.+.++..+||.+..+.... .-+|...+++.++.++.-+
T Consensus 12 ~V~nl~~~---~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~l~ 65 (94)
T 2e5g_A 12 FVSGFPRG---VDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLSQS 65 (94)
T ss_dssp EEECCCTT---CCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHTCS
T ss_pred EEECCCCC---CCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHhcC
Confidence 45776432 23456778889999887653221 3456678999999888633
No 183
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=25.00 E-value=78 Score=16.17 Aligned_cols=49 Identities=8% Similarity=0.104 Sum_probs=32.4
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC---CeeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG---ELLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g---~~~~v~i~~p~~~~~vl~~ 60 (123)
++|++..- -..+.+.++..+||++..+.+. +.-+|...+++.++.++..
T Consensus 19 ~V~nlp~~---~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~ 70 (99)
T 2cpj_A 19 FVGNLPPD---ITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVE 70 (99)
T ss_dssp EEESCCTT---CCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHH
Confidence 45666432 2345577888999998776653 3456667888888877643
No 184
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=24.64 E-value=81 Score=16.22 Aligned_cols=49 Identities=16% Similarity=0.369 Sum_probs=33.7
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEe-CCeeEEEecCHHHHHHHHh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQL-GELLALVISSPGATQEVLK 59 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-g~~~~v~i~~p~~~~~vl~ 59 (123)
++|++.. ..-.-+.+.++..+||.+..+.+ -+..+|...+.+.++.++.
T Consensus 26 ~V~nLp~--~~~t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~ 75 (97)
T 2xnq_A 26 FIGNLPL--KNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIE 75 (97)
T ss_dssp EEESCCS--SCCCHHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHH
T ss_pred EEeCCCc--ccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHH
Confidence 4566642 01234557788899999887765 3456677889999988875
No 185
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=24.62 E-value=68 Score=15.32 Aligned_cols=50 Identities=16% Similarity=0.166 Sum_probs=30.5
Q ss_pred ccchhhhcCCChHHHHHHHHHhhCCceEEEeC---------CeeEEEecCHHHHHHHHhhCc
Q 037456 10 IGNFHQWAGALPHQALTRLSKQHGPVMKLQLG---------ELLALVISSPGATQEVLKTNE 62 (123)
Q Consensus 10 lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g---------~~~~v~i~~p~~~~~vl~~~~ 62 (123)
+||+..- -..+.+.++..+||++....+. +.-.|...+++.++.++....
T Consensus 5 v~nlp~~---~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 63 (77)
T 1uaw_A 5 IGGLSWQ---TTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 63 (77)
T ss_dssp EESCCSS---CCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT
T ss_pred EeCCCCC---CCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC
Confidence 4665432 1233467788899987655431 134555678888888886544
No 186
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=24.46 E-value=83 Score=16.29 Aligned_cols=49 Identities=10% Similarity=0.146 Sum_probs=31.6
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC--------CeeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG--------ELLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g--------~~~~v~i~~p~~~~~vl~~ 60 (123)
+++|+..- -..+.+.++..+||.+..+.+. +.-+|...+++.++.++..
T Consensus 33 ~V~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 89 (107)
T 3ulh_A 33 LVSNLDFG---VSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQ 89 (107)
T ss_dssp EEESCCTT---CCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHH
Confidence 34665432 2245577888899998765532 1345667899999888763
No 187
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.34 E-value=81 Score=16.11 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=33.1
Q ss_pred cccchhhhcCCChHHHHHHHHHhh--CCceEEEe-CCeeEEEecCHHHHHHHHh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQH--GPVMKLQL-GELLALVISSPGATQEVLK 59 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~-g~~~~v~i~~p~~~~~vl~ 59 (123)
++||+..- -..+.+.++..+| |.+..+.+ -+.-+|...+++.++.++.
T Consensus 19 ~V~nLp~~---~t~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~ 69 (99)
T 2cpd_A 19 YVRNLMLS---TSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMK 69 (99)
T ss_dssp EEESCCTT---CCHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHH
Confidence 45666432 2345577888999 77877664 3356777889999988875
No 188
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.85 E-value=91 Score=16.52 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=27.3
Q ss_pred HHHHHHHHhhCCceEEEeC-----CeeEEEecCHHHHHHHHhh
Q 037456 23 QALTRLSKQHGPVMKLQLG-----ELLALVISSPGATQEVLKT 60 (123)
Q Consensus 23 ~~~~~~~~~~g~~~~~~~g-----~~~~v~i~~p~~~~~vl~~ 60 (123)
+.+.+...+||.+..+.+. +.-+|...+.+.++..+..
T Consensus 41 ~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~ 83 (112)
T 2dit_A 41 EDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQT 83 (112)
T ss_dssp HHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHH
T ss_pred HHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHH
Confidence 4677888899988766542 3456667888888887754
No 189
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=23.67 E-value=81 Score=15.86 Aligned_cols=48 Identities=19% Similarity=0.309 Sum_probs=31.6
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC--------CeeEEEecCHHHHHHHHh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG--------ELLALVISSPGATQEVLK 59 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g--------~~~~v~i~~p~~~~~vl~ 59 (123)
+++++..- -..+.+.++..+||++..+.+. +.-+|...+++.++.++.
T Consensus 20 ~v~nlp~~---~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~ 75 (95)
T 2ywk_A 20 FVGNLEAR---VREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIA 75 (95)
T ss_dssp EEECCCTT---CCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHH
T ss_pred EEECCCCC---CCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHH
Confidence 34665432 2345578888999998766542 134566788898888875
No 190
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=23.42 E-value=78 Score=15.62 Aligned_cols=54 Identities=17% Similarity=0.174 Sum_probs=32.9
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC---------CeeEEEecCHHHHHHHHhhCcccc
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG---------ELLALVISSPGATQEVLKTNEISF 65 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g---------~~~~v~i~~p~~~~~vl~~~~~~~ 65 (123)
++|++..- -..+.+.++..+||++..+.+. +.-+|...+++.++.++.-+...+
T Consensus 10 ~V~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~ 72 (89)
T 3ucg_A 10 YVGNVDYG---ATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLF 72 (89)
T ss_dssp EEESCCTT---CCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEE
T ss_pred EEeCCCCC---CCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEE
Confidence 34555432 2345577888899998765431 134566788888888874333333
No 191
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=23.34 E-value=1.3e+02 Score=18.21 Aligned_cols=49 Identities=16% Similarity=0.146 Sum_probs=34.0
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC----CeeEEEecCHHHHHHHHh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG----ELLALVISSPGATQEVLK 59 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g----~~~~v~i~~p~~~~~vl~ 59 (123)
++||+... .-.-+.+.++..+||.+..+.+. +.-+|...+++.++..+.
T Consensus 38 ~V~nLp~~--~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~ 90 (229)
T 2adc_A 38 LVSNLNPE--RVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMS 90 (229)
T ss_dssp EEESCCTT--TCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHH
T ss_pred EEeCCCcc--cCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHH
Confidence 45676530 12245677888999998877653 346777889999988875
No 192
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.26 E-value=1e+02 Score=16.91 Aligned_cols=47 Identities=13% Similarity=0.105 Sum_probs=32.8
Q ss_pred cchhhhcCCChHHHHHHHHHhhCCceEEEeCC---eeEEEecCHHHHHHHHhh
Q 037456 11 GNFHQWAGALPHQALTRLSKQHGPVMKLQLGE---LLALVISSPGATQEVLKT 60 (123)
Q Consensus 11 G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~---~~~v~i~~p~~~~~vl~~ 60 (123)
|++..- -.-+.+.+...+||.+..+.+.. .-+|-..+++.++..+.+
T Consensus 33 g~L~~~---~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~ 82 (114)
T 2cq2_A 33 GGLGNG---VSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVT 82 (114)
T ss_dssp CTGGGT---CCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHH
T ss_pred CCCCCC---CCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 556432 23456788999999988777532 456777899888888754
No 193
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=22.82 E-value=87 Score=15.93 Aligned_cols=50 Identities=16% Similarity=0.342 Sum_probs=34.8
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEe-CCeeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQL-GELLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-g~~~~v~i~~p~~~~~vl~~ 60 (123)
++|++..- .-.-+.+.++..+||++..+.+ -+.-+|...+++.++.++..
T Consensus 14 ~V~nlp~~--~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~ 64 (96)
T 2kvi_A 14 FIGNLPLK--NVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEC 64 (96)
T ss_dssp EEESSTTS--CCCHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHH
T ss_pred EEeCCCcc--cCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHH
Confidence 45777530 1234557788899999877664 34567778899999888864
No 194
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.70 E-value=80 Score=15.45 Aligned_cols=49 Identities=10% Similarity=0.143 Sum_probs=34.2
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC---CeeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG---ELLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g---~~~~v~i~~p~~~~~vl~~ 60 (123)
++|++..- -..+.+.++..+||++..+.+. +..+|...+++.++.++..
T Consensus 16 ~V~~l~~~---~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~ 67 (85)
T 2ytc_A 16 YVGGLGDT---ITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEK 67 (85)
T ss_dssp EEECCTTT---SCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHT
T ss_pred EEcCCCCC---CCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHH
Confidence 45666432 2345677888999998776642 3456778899999988864
No 195
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=22.66 E-value=1.5e+02 Score=18.52 Aligned_cols=51 Identities=12% Similarity=0.213 Sum_probs=33.1
Q ss_pred cccchhhhcC-CChHHHHHHHHHhhCCceEEEeC------CeeEEEecCHHHHHHHHh
Q 037456 9 SIGNFHQWAG-ALPHQALTRLSKQHGPVMKLQLG------ELLALVISSPGATQEVLK 59 (123)
Q Consensus 9 ~lG~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~g------~~~~v~i~~p~~~~~vl~ 59 (123)
++||+..-.. .+....+.++..+||.|..+.+. +.-+|...+.+.++..+.
T Consensus 13 ~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~ 70 (282)
T 3pgw_A 13 YINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALR 70 (282)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHH
Confidence 5677754312 12223466888999998776642 245677789999888874
No 196
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=22.62 E-value=97 Score=16.40 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhCCceEEEeC---------CeeEEEecCHHHHHHHHhh
Q 037456 22 HQALTRLSKQHGPVMKLQLG---------ELLALVISSPGATQEVLKT 60 (123)
Q Consensus 22 ~~~~~~~~~~~g~~~~~~~g---------~~~~v~i~~p~~~~~vl~~ 60 (123)
.+.+.++..+||.+..+.+. +.-+|...+.+.++..+..
T Consensus 54 ~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 101 (118)
T 2khc_A 54 DTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKA 101 (118)
T ss_dssp HHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 45677888899988776652 2345667888988888764
No 197
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=22.49 E-value=89 Score=15.94 Aligned_cols=48 Identities=10% Similarity=0.200 Sum_probs=30.5
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceE--------EEe--C-------CeeEEEecCHHHHHHHHh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMK--------LQL--G-------ELLALVISSPGATQEVLK 59 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~--------~~~--g-------~~~~v~i~~p~~~~~vl~ 59 (123)
++|++..- -..+.+.++..+||.+.. +.+ . +.-+|...+.+.++..+.
T Consensus 17 ~V~nLp~~---~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~ 81 (99)
T 2la6_A 17 FVQGLGEN---VTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAID 81 (99)
T ss_dssp EEECCCSS---CCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHH
Confidence 35666432 234567788899998765 432 1 134566789999888875
No 198
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=21.82 E-value=1.1e+02 Score=17.19 Aligned_cols=56 Identities=9% Similarity=0.088 Sum_probs=33.5
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCC---ceEEEe-----CC---eeEEEecCHHHHHHHHhhCcccccC
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGP---VMKLQL-----GE---LLALVISSPGATQEVLKTNEISFAQ 67 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~-----g~---~~~v~i~~p~~~~~vl~~~~~~~~~ 67 (123)
++||+..- ..-+-+.++..+||. +..+.+ +. .-+|...+++.++..+..+...+..
T Consensus 48 fVgnLp~~---~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~g 114 (136)
T 2hgl_A 48 KLRGLPWS---CSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGH 114 (136)
T ss_dssp EEESCCTT---CCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSS
T ss_pred EEeCCCCC---CCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECC
Confidence 45666432 234557788888997 433222 21 3467788999999888744443433
No 199
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.72 E-value=1.1e+02 Score=16.74 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=23.9
Q ss_pred CceEEE-eCCeeEEEecCHHHHHHHHhhCcccccC
Q 037456 34 PVMKLQ-LGELLALVISSPGATQEVLKTNEISFAQ 67 (123)
Q Consensus 34 ~~~~~~-~g~~~~v~i~~p~~~~~vl~~~~~~~~~ 67 (123)
++..+. .+...+|.+.+++.++.||++....+.+
T Consensus 39 ~V~~v~~~~~~AvItF~d~~va~rVL~k~~H~L~~ 73 (104)
T 2dhx_A 39 PVLSWQRLGCGGVLTFREPADAERVLAQADHELHG 73 (104)
T ss_dssp CEEEEEEETTEEEEEESSHHHHHHHHTCSCCBSSS
T ss_pred eeeEEEEcCCcEEEEEcChHHHHHHhcCCcceecC
Confidence 455554 4556688889999999999874444443
No 200
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=21.70 E-value=1.1e+02 Score=16.75 Aligned_cols=39 Identities=15% Similarity=0.226 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhCCceEEEeC---------CeeEEEecCHHHHHHHHhh
Q 037456 22 HQALTRLSKQHGPVMKLQLG---------ELLALVISSPGATQEVLKT 60 (123)
Q Consensus 22 ~~~~~~~~~~~g~~~~~~~g---------~~~~v~i~~p~~~~~vl~~ 60 (123)
-+.+.++..+||.|..+.+. +.-+|...+.+.++.++..
T Consensus 56 ~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 103 (139)
T 1u6f_A 56 EVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAG 103 (139)
T ss_dssp HHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 45577888999998766541 1245667899999888864
No 201
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=21.63 E-value=1.1e+02 Score=16.88 Aligned_cols=49 Identities=10% Similarity=0.196 Sum_probs=33.6
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeCC---------eeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLGE---------LLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~---------~~~v~i~~p~~~~~vl~~ 60 (123)
++|++.. .-..+.+.++..+||++..+.+.. .-+|...+.+.++.++..
T Consensus 51 ~V~nLp~---~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~ 108 (135)
T 2lea_A 51 KVDNLTY---RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 108 (135)
T ss_dssp EEECCCS---SCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTT
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 3466532 233456788889999987776532 346778899999988864
No 202
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=21.60 E-value=1e+02 Score=16.16 Aligned_cols=49 Identities=12% Similarity=0.120 Sum_probs=32.3
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEe-CCeeEEEecCHHHHHHHHh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQL-GELLALVISSPGATQEVLK 59 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-g~~~~v~i~~p~~~~~vl~ 59 (123)
++|++..- .-..+.+.++..+||++..+.+ -+..+|...+.+.++.++.
T Consensus 31 ~V~nl~~~--~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~ 80 (110)
T 1wf1_A 31 FIGNLNTA--LVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVL 80 (110)
T ss_dssp EECSCCCS--SCCHHHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHHHHHH
T ss_pred EEeCCCcc--cCCHHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHHHHHH
Confidence 35665421 0234567888899999876664 3345677788888888774
No 203
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=21.15 E-value=1.2e+02 Score=16.85 Aligned_cols=48 Identities=10% Similarity=0.122 Sum_probs=31.9
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC---------CeeEEEecCHHHHHHHHh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG---------ELLALVISSPGATQEVLK 59 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g---------~~~~v~i~~p~~~~~vl~ 59 (123)
++|++..- -.-+.+.++..+||++..+.+. +.-+|...+++.++..+.
T Consensus 6 ~v~nlp~~---~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~ 62 (167)
T 1fxl_A 6 IVNYLPQN---MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 62 (167)
T ss_dssp EEESCCTT---CCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred EEcCCCCC---CCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHH
Confidence 35666432 2345577888999998765531 234666789999998885
No 204
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.12 E-value=1e+02 Score=16.16 Aligned_cols=49 Identities=10% Similarity=0.184 Sum_probs=30.7
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCc----eEEEe--C---CeeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPV----MKLQL--G---ELLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~----~~~~~--g---~~~~v~i~~p~~~~~vl~~ 60 (123)
++||+..- -..+.+.++..+||.+ ..... + +.-+|...+.+.++.++..
T Consensus 29 ~V~nLp~~---~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 86 (115)
T 2cpx_A 29 YLKNLSPR---VTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHL 86 (115)
T ss_dssp EEECCCTT---CCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHH
Confidence 45666432 2344566788888876 33332 1 2456777899999888864
No 205
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=20.85 E-value=1.5e+02 Score=17.85 Aligned_cols=48 Identities=8% Similarity=0.028 Sum_probs=34.3
Q ss_pred cccchh-hhcCCChHHHHHHHHHhhCCceEEEeC----CeeEEEecCHHHHHHHHh
Q 037456 9 SIGNFH-QWAGALPHQALTRLSKQHGPVMKLQLG----ELLALVISSPGATQEVLK 59 (123)
Q Consensus 9 ~lG~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~g----~~~~v~i~~p~~~~~vl~ 59 (123)
++||+. .- -..+.+.++..+||++..+.+. +.-+|...+++.++..+.
T Consensus 8 ~V~nL~~~~---~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~ 60 (205)
T 3tyt_A 8 MVYGLDQSK---MNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAIT 60 (205)
T ss_dssp EEECCCTTT---CCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHH
T ss_pred EEeCCCccc---CCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHH
Confidence 468875 32 2234677888999999887653 346788889999887774
No 206
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.57 E-value=1.1e+02 Score=16.08 Aligned_cols=48 Identities=8% Similarity=0.112 Sum_probs=31.7
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC--------CeeEEEecCHHHHHHHHh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG--------ELLALVISSPGATQEVLK 59 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g--------~~~~v~i~~p~~~~~vl~ 59 (123)
+++|+..- -..+.+.++..+||.+..+.+. +.-+|...+.+.++.++.
T Consensus 19 ~V~nlp~~---~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~ 74 (114)
T 2do0_A 19 FVANLDYK---VGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAIS 74 (114)
T ss_dssp EEESCCTT---CCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHH
Confidence 45666432 2345577888999988755432 134566789998888875
No 207
>2qv6_A MJ0145, GTP cyclohydrolase III, MJGC; enzyme, FAPY; HET: GTP; 2.00A {Methanocaldococcus jannaschii}
Probab=20.52 E-value=1.8e+02 Score=18.81 Aligned_cols=36 Identities=11% Similarity=0.072 Sum_probs=25.9
Q ss_pred HHHHHHHHhhCCceEEEeCCeeEEEecC---HHHHHHHHh
Q 037456 23 QALTRLSKQHGPVMKLQLGELLALVISS---PGATQEVLK 59 (123)
Q Consensus 23 ~~~~~~~~~~g~~~~~~~g~~~~v~i~~---p~~~~~vl~ 59 (123)
..+.+..+++|.+. +++|+.+++++++ +..++.++.
T Consensus 164 ~~Ll~y~~~igG~l-f~iGgdny~iftt~~~rg~ie~~i~ 202 (268)
T 2qv6_A 164 LALMEELLKYNALL-FFIGGDNFMAPSNGMSEEDFLDIFN 202 (268)
T ss_dssp HHHHHHHHTTTCCC-EEEETTEEEEECTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCEE-EEECCCEEEEEeCCCChhHHHHHHH
Confidence 44556677777665 4467778888888 999988774
No 208
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=20.24 E-value=2.1e+02 Score=19.25 Aligned_cols=53 Identities=11% Similarity=0.008 Sum_probs=35.3
Q ss_pred CCcccchhhhcCCChHHHHHHHHHhhCCceEEEeC---CeeEEEecCHHHHHHHHhh
Q 037456 7 LPSIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG---ELLALVISSPGATQEVLKT 60 (123)
Q Consensus 7 ~p~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g---~~~~v~i~~p~~~~~vl~~ 60 (123)
.-++||+..- ..-.-+.+.+...+||.+..+.+. +.-+|-..+.+.++..+.+
T Consensus 20 ~l~VgN~gl~-~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~ 75 (345)
T 3tht_A 20 SLVVANGGLG-NGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVT 75 (345)
T ss_dssp EEEEETCSGG-GTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHH
T ss_pred EEEEEcCCCC-CCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 3356775321 122345678889999998877762 3456777899988888754
No 209
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=20.05 E-value=1e+02 Score=15.64 Aligned_cols=49 Identities=14% Similarity=0.185 Sum_probs=33.7
Q ss_pred cccchhhhcCCChHHHHHHHHHhhCCceEEEeC---------CeeEEEecCHHHHHHHHhh
Q 037456 9 SIGNFHQWAGALPHQALTRLSKQHGPVMKLQLG---------ELLALVISSPGATQEVLKT 60 (123)
Q Consensus 9 ~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g---------~~~~v~i~~p~~~~~vl~~ 60 (123)
+++++..- -..+.+.++..+||++..+.+. +.-+|...+++.++.++..
T Consensus 12 ~V~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 69 (99)
T 1whw_A 12 FVRNLSYT---SSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE 69 (99)
T ss_dssp EEECCCTT---CCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHH
Confidence 45666432 2345577888999998877652 2356778899999888843
Done!