BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037458
(196 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SX79|RB47C_ARATH Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana
GN=RBP47C PE=2 SV=1
Length = 432
Score = 206 bits (525), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 110/189 (58%), Positives = 135/189 (71%), Gaps = 19/189 (10%)
Query: 12 SQDQQNQRQQQQQPPPPQQQPWMAMQYPAAAMVMPHQMMPPQHYPIPPPPYMPYHQYQHH 71
+++++NQ + PPP WM +YP +++PHQMM PPP+ PYHQY +H
Sbjct: 34 AKEEENQPKTSPTPPPH----WM--RYPPT-VIIPHQMM------YAPPPFPPYHQYPNH 80
Query: 72 HQPHLQHQQQ-QQHQGSGGGENKTIWVGDLHHWMDENYLHSCFASTGE--IASIKVIRNK 128
H HL HQ + +HQ + GENKTIWVGDLHHWMDE YL+S FAS E I S+KVIRNK
Sbjct: 81 H--HLHHQSRGNKHQNAFNGENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNK 138
Query: 129 QTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWATFSTGDKR-SDNGPDLS 187
GLSEGYGFVEF +H A+KVL+ + MPNTDQPFRLNWA+FSTG+KR +NGPDLS
Sbjct: 139 NNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLS 198
Query: 188 IFVGDLAAD 196
IFVGDL+ D
Sbjct: 199 IFVGDLSPD 207
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 90 GENKTIWVGDLHHWMDENYLHSCFAST-GEIASIKVIRNKQTGLSEGYGFVEFFTHATAE 148
G + +I+VGDL + +N LH F+ + + KV+ + TG S+GYGFV F
Sbjct: 194 GPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERT 253
Query: 149 KVLQSYTSI 157
K + +
Sbjct: 254 KAMTEMNGV 262
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 92 NKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVL 151
N TI+VG L + + L F GEI S+K+ + +G GFV+F AE+ L
Sbjct: 303 NTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIP------VGKGCGFVQFVNRPNAEEAL 356
Query: 152 QSYTSILMPNTDQPFRLNWA 171
+ ++ Q RL+W
Sbjct: 357 EKLNGTVI--GKQTVRLSWG 374
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 181 bits (458), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 77/106 (72%), Positives = 90/106 (84%)
Query: 91 ENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKV 150
+NKTIW+GDL WMDE+YLHSCF+ GE+ S+K+IRNKQTG SE YGFVEF THA AEKV
Sbjct: 82 DNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKV 141
Query: 151 LQSYTSILMPNTDQPFRLNWATFSTGDKRSDNGPDLSIFVGDLAAD 196
LQSY +MPNT+QPFRLNWA FSTG+KR++ G D SIFVGDLA+D
Sbjct: 142 LQSYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASD 187
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Query: 85 QGSGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTH 144
Q G N TI+VG L + + L F GE+ S+K+ K G GFV+F
Sbjct: 287 QSDGDSSNTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKIPAGK------GCGFVQFSDR 340
Query: 145 ATAEKVLQSYTSILMPNTDQPFRLNWA 171
++A++ +Q + ++ Q RL+W
Sbjct: 341 SSAQEAIQKLSGAIIGK--QAVRLSWG 365
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 90 GENKTIWVGDLHHWMDENYLHSCFASTG-EIASIKVIRNKQTGLSEGYGFVEFFTHATAE 148
G + +I+VGDL + + L FAS + KV+ + TG S+GYGFV F +
Sbjct: 174 GSDFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERS 233
Query: 149 KVLQSYTSILMPNTDQPFRLNWAT 172
+ + + + + R+ AT
Sbjct: 234 RAMTEMNGVYC--SSRAMRIGVAT 255
>sp|Q0WW84|RB47B_ARATH Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana
GN=RBP47B PE=2 SV=1
Length = 435
Score = 177 bits (449), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 104/182 (57%), Positives = 128/182 (70%), Gaps = 21/182 (11%)
Query: 30 QQPWM-AMQYPAAAMVMPHQMMPPQHYPIPPPPYMPYHQ--YQHHHQPHLQHQ------- 79
QQ WM AMQYP AA +M Q Y P Y+PY+Q YQ HH P L HQ
Sbjct: 37 QQQWMAAMQYPPAAAMMMMQQQQMLMY---PHQYVPYNQGPYQQHH-PQL-HQYGSYQQH 91
Query: 80 ----QQQQHQGSGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEG 135
+ +GS G + KT+WVGDL HWMDE YLHSCF+ TGE++S+KVIRNK T SEG
Sbjct: 92 QHQQHKAIDRGS-GDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEG 150
Query: 136 YGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWATFSTGDKRS-DNGPDLSIFVGDLA 194
YGFVEF + A AE+VLQ+Y+ +MPN+DQPFR+NWA+FSTG+KR+ +NGPDLS+FVGDL+
Sbjct: 151 YGFVEFLSRAAAEEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLS 210
Query: 195 AD 196
D
Sbjct: 211 PD 212
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 10/100 (10%)
Query: 85 QGSGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTH 144
Q G N TI+VG + + + L F+ GE+ S+K+ + +G GFV+F
Sbjct: 313 QSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIP------VGKGCGFVQFADR 366
Query: 145 ATAEKVLQSYT-SILMPNTDQPFRLNWATFSTGDKRSDNG 183
+AE ++S +++ NT RL+W R D+G
Sbjct: 367 KSAEDAIESLNGTVIGKNT---VRLSWGRSPNKQWRGDSG 403
Score = 38.5 bits (88), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 90 GENKTIWVGDLHHWMDENYLHSCFASTG-EIASIKVIRNKQTGLSEGYGFVEFFTHATAE 148
G + +++VGDL + + LH F+ + S KV+ + TG S+GYGFV F
Sbjct: 199 GPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERS 258
Query: 149 KVLQSYTSILMPNTDQPFRLNWAT 172
+ L N + R+ AT
Sbjct: 259 RALTEMNGAYCSN--RQMRVGIAT 280
>sp|Q9SX80|R47CP_ARATH Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana
GN=RBP47C' PE=2 SV=1
Length = 434
Score = 175 bits (443), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 89/136 (65%), Positives = 102/136 (75%), Gaps = 6/136 (4%)
Query: 65 YHQYQHHHQPHLQHQQQ-QQHQGSGGGENKTIWVGDLHHWMDENYLHSCFAST--GEIAS 121
YHQY +HH H HQ + +HQ + GENKTIWVGDL +WMDE YL+S F S EI S
Sbjct: 76 YHQYPNHH--HFHHQSRGNKHQNAFNGENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVS 133
Query: 122 IKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWATFSTGDKR-S 180
+KVIRNK G SEGYGFVEF +H A+KVLQ + MPNTDQPFRLNWA+FSTG+KR
Sbjct: 134 LKVIRNKHNGSSEGYGFVEFESHDVADKVLQEFNGAPMPNTDQPFRLNWASFSTGEKRLE 193
Query: 181 DNGPDLSIFVGDLAAD 196
+NGPDLSIFVGDLA D
Sbjct: 194 NNGPDLSIFVGDLAPD 209
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 92 NKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVL 151
N TI+VG L + + L F+ GEI S+K+ + +G GFV+F AE+ L
Sbjct: 305 NTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIP------VGKGCGFVQFVNRPNAEEAL 358
Query: 152 QSYTSILMPNTDQPFRLNWA 171
+ ++ Q RL+W
Sbjct: 359 EKLNGTVI--GKQTVRLSWG 376
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 90 GENKTIWVGDLHHWMDENYLHSCFASTG-EIASIKVIRNKQTGLSEGYGFVEF 141
G + +I+VGDL + + LH F+ + + KV+ + TG S+GYGFV F
Sbjct: 196 GPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRF 248
>sp|F4I3B3|RB47A_ARATH Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana
GN=RBP47A PE=2 SV=1
Length = 445
Score = 174 bits (440), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 96/172 (55%), Positives = 117/172 (68%), Gaps = 16/172 (9%)
Query: 38 YPAAAMVMPHQMMPPQHYPIPPPPYMPYHQYQHHHQPHLQHQQQQQ------------HQ 85
YPAAAM M Q + P P Y PY+Q + P Q+ QQ
Sbjct: 55 YPAAAMAMMQQQQMMMY---PHPQYAPYNQAAYQQHPQFQYAAYQQQQQQHHQSQQQPRG 111
Query: 86 GSGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHA 145
GSGG + KT+WVGDL HWMDE YLH+CF+ T E++S+KVIRNKQT SEGYGFVEF + +
Sbjct: 112 GSGGDDVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRS 171
Query: 146 TAEKVLQSYTSILMPNTDQPFRLNWATFSTGDKR-SDNGPDLSIFVGDLAAD 196
AE+ LQS++ + MPN +QPFRLNWA+FSTG+KR S+NGPDLSIFVGDLA D
Sbjct: 172 AAEEALQSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPD 223
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 92 NKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVL 151
N TI+VG L + E L F+ GE+ S+K+ + +G GFV+F +AE+ +
Sbjct: 326 NSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIP------VGKGCGFVQFANRQSAEEAI 379
Query: 152 QSYT-SILMPNTDQPFRLNWATFSTGDKRSDNG 183
+ +++ NT RL+W RSD+G
Sbjct: 380 GNLNGTVIGKNT---VRLSWGRSPNKQWRSDSG 409
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 50/135 (37%), Gaps = 21/135 (15%)
Query: 83 QHQGSGGGENKTIWVGDLHHWMDENYLHSCFASTG-EIASIKVIRNKQTGLSEGYGFVEF 141
+ + S G + +I+VGDL + + L FA + KV+ + TG S+GYGFV F
Sbjct: 203 EKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRF 262
Query: 142 FTHATAEKVL-----------QSYTSILMP---------NTDQPFRLNWATFSTGDKRSD 181
+ + Q I P N Q L G
Sbjct: 263 GDENERSRAMTEMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDG 322
Query: 182 NGPDLSIFVGDLAAD 196
+ +IFVG L AD
Sbjct: 323 ESNNSTIFVGGLDAD 337
>sp|Q9SAB3|RB45B_ARATH Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana
GN=RBP45B PE=1 SV=1
Length = 405
Score = 150 bits (378), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 83/175 (47%), Positives = 105/175 (60%), Gaps = 25/175 (14%)
Query: 36 MQYPAAAMVMPHQMMPPQHY-------------PIPPPPYMPYHQYQHHHQPHLQHQQQQ 82
MQ P ++PH PP PPPP M Q P +Q
Sbjct: 2 MQQPPPGGILPHHAPPPSAQQQYGYQQPYGIAGAAPPPPQM--WNPQAAAPPSVQPTTAD 59
Query: 83 QHQGSGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFF 142
E +T+W+GDL +WMDEN+L+ CFA TGE+ S KVIRNKQTG EGYGF+EF
Sbjct: 60 --------EIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFA 111
Query: 143 THATAEKVLQSYTSILMPNT-DQPFRLNWATFSTGDKRSDNGPDLSIFVGDLAAD 196
+HA AE+VLQ++ + +P+ DQ FRLNWA+ S+GDKR D+ PD +IFVGDLAAD
Sbjct: 112 SHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKR-DDSPDYTIFVGDLAAD 165
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 17/117 (14%)
Query: 94 TIWVGDLHHWMDENYLHSCF-ASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQ 152
TI+VGDL + + L F AS + KV+ ++ TG ++GYGFV F + + +
Sbjct: 156 TIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMT 215
Query: 153 SYTSILMPNTDQPFRLNWATFSTG-------------DKRSDNGP-DLSIFVGDLAA 195
+ P + +P R+ A G +DN P + ++FVG L A
Sbjct: 216 EMNGV--PCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDA 270
Score = 43.5 bits (101), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 15/99 (15%)
Query: 80 QQQQHQGSGGG-------ENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGL 132
Q+ +Q S G N T++VG L + +++L + F+ GEI +K+ K+
Sbjct: 241 QRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRC-- 298
Query: 133 SEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWA 171
GFV+F + AE+ L+ + + T RL+W
Sbjct: 299 ----GFVQFSEKSCAEEALRMLNGVQLGGTT--VRLSWG 331
>sp|Q9LEB4|RBP45_NICPL Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia
GN=RBP45 PE=1 SV=1
Length = 409
Score = 150 bits (378), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 64/106 (60%), Positives = 83/106 (78%), Gaps = 1/106 (0%)
Query: 91 ENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKV 150
E +++W+GDL +WMDENYL +CF TGE+ S KVIRNKQTG SEGYGF+EF +HA AE +
Sbjct: 82 EVRSLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEFRSHAAAETI 141
Query: 151 LQSYTSILMPNTDQPFRLNWATFSTGDKRSDNGPDLSIFVGDLAAD 196
LQ+Y LMPN +Q FR+NWA+ G++R D+ + +IFVGDLAAD
Sbjct: 142 LQTYNGTLMPNVEQNFRMNWASLGAGERRDDSA-EHTIFVGDLAAD 186
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 78 HQQQQQHQGSGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYG 137
+Q Q QG N TI+VG L + E +L F+ GE+ +K++ K+ G
Sbjct: 267 YQNPQATQGESDPNNTTIFVGGLDPTVAEEHLRQVFSPYGELVHVKIVAGKRC------G 320
Query: 138 FVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWA 171
FV+F T A+AE+ L S + Q RL+W
Sbjct: 321 FVQFGTRASAEQALSSLNGTQLGG--QSIRLSWG 352
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 9/108 (8%)
Query: 68 YQHHHQPHLQHQQQQQHQGSGGGENK------TIWVGDLHHWMDENYLHSCFAST-GEIA 120
Y P+++ + G GE + TI+VGDL + + L F S +
Sbjct: 145 YNGTLMPNVEQNFRMNWASLGAGERRDDSAEHTIFVGDLAADVTDYILQETFKSVYSSVR 204
Query: 121 SIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRL 168
KV+ ++ TG S+GYGFV+F + + + +L + +P R+
Sbjct: 205 GAKVVTDRITGRSKGYGFVKFADESEQLRAMTEMNGVLC--STRPMRI 250
>sp|Q8VXZ9|R47BP_ARATH Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana
GN=RBP47B' PE=2 SV=1
Length = 425
Score = 149 bits (377), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 66/106 (62%), Positives = 81/106 (76%), Gaps = 1/106 (0%)
Query: 91 ENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKV 150
E +T+W+GDL +W+DENYL SCF+ TGE+ S+KVIRNK TG EGYGF+EF +HA AE+
Sbjct: 22 EVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERT 81
Query: 151 LQSYTSILMPNTDQPFRLNWATFSTGDKRSDNGPDLSIFVGDLAAD 196
LQ+Y MP T+ FRLNWA+F +G K D GPD SIFVGDLA D
Sbjct: 82 LQTYNGTQMPGTELTFRLNWASFGSGQK-VDAGPDHSIFVGDLAPD 126
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 86 GSG----GGENKTIWVGDLHHWMDENYLHSCF-ASTGEIASIKVIRNKQTGLSEGYGFVE 140
GSG G + +I+VGDL + + L F + KV+ + TG S+GYGFV+
Sbjct: 105 GSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVK 164
Query: 141 FFTHATAEKVLQSYTSILMPNTDQPFRLNWAT 172
F + + + + + +P R++ AT
Sbjct: 165 FAEESERNRAMAEMNGLYC--STRPMRISAAT 194
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQS 153
TI V +L + E L F+ GE+ +K+ K GYG+V+F T +AE+ +Q
Sbjct: 238 TISVANLDQNVTEEELKKAFSQLGEVIYVKIPATK------GYGYVQFKTRPSAEEAVQR 291
Query: 154 YTSILMPNTDQPFRLNWA 171
++ Q R++W+
Sbjct: 292 MQGQVI--GQQAVRISWS 307
>sp|Q93W34|RP45C_ARATH Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana
GN=RBP45C PE=2 SV=1
Length = 415
Score = 142 bits (357), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 61/107 (57%), Positives = 78/107 (72%)
Query: 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEK 149
GE +++W+GDL WMDENYL + F TGE + KVIRNKQ G SEGYGF+EF HATAE+
Sbjct: 77 GEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAER 136
Query: 150 VLQSYTSILMPNTDQPFRLNWATFSTGDKRSDNGPDLSIFVGDLAAD 196
LQ+Y MP+++Q FRLNWA G++R GP+ ++FVGDLA D
Sbjct: 137 NLQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPD 183
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 78 HQQQQQHQGSGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYG 137
+Q Q + G N TI+VG + + E+ L S F GE+ +K+ K+ G
Sbjct: 263 YQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRC------G 316
Query: 138 FVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWA 171
FV++ A AE+ L + Q RL+W
Sbjct: 317 FVQYANRACAEQALSVLNGTQL--GGQSIRLSWG 348
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 88 GGGENK-------TIWVGDLHHWMDENYLHSCFAST-GEIASIKVIRNKQTGLSEGYGFV 139
G GE + T++VGDL + ++ L F + + KV+ ++ TG S+GYGFV
Sbjct: 161 GAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFV 220
Query: 140 EF 141
F
Sbjct: 221 RF 222
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 139 bits (351), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 63/103 (61%), Positives = 77/103 (74%), Gaps = 1/103 (0%)
Query: 93 KTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQ 152
K++W+GDL WMDENY+ S FA +GE S KVIRNK TG SEGYGF+EF +H+ AE+VLQ
Sbjct: 60 KSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQ 119
Query: 153 SYTSILMPNTDQPFRLNWATFSTGDKR-SDNGPDLSIFVGDLA 194
+Y MP+T+Q FRLNWA G+KR GPD +IFVGDLA
Sbjct: 120 TYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLA 162
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 17/122 (13%)
Query: 90 GENKTIWVGDLHHWMDENYLHSCFAST-GEIASIKVIRNKQTGLSEGYGFVEFFTHATAE 148
G + TI+VGDL + + L F + G + KV+ ++ TG S+GYGFV F
Sbjct: 151 GPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQM 210
Query: 149 KVLQSYTSILMPNTDQPFRLNWATFST-------------GDKRSDNGP-DLSIFVGDLA 194
+ + + +P R+ A G DN P + +IFVG L
Sbjct: 211 RAMTEMNGQYC--STRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLD 268
Query: 195 AD 196
A+
Sbjct: 269 AN 270
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 8/99 (8%)
Query: 73 QPHLQHQQQQQHQGSGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGL 132
QP + Q + G N TI+VG L + ++ L S F GE+ +K+ K+
Sbjct: 240 QPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRC-- 297
Query: 133 SEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWA 171
GFV++ A+AE L + Q RL+W
Sbjct: 298 ----GFVQYANKASAEHALSVLNGTQL--GGQSIRLSWG 330
>sp|Q80VC6|TSAP1_MOUSE tRNA selenocysteine 1-associated protein 1 OS=Mus musculus
GN=Trnau1ap PE=1 SV=2
Length = 287
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 68/106 (64%), Gaps = 6/106 (5%)
Query: 94 TIWVGDLHHWMDENYLHSCFASTGE-IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQ 152
++W+GDL +MDEN++ FA+ GE + S+K+IRN+ TG+ GY FVEF ATAEK L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 153 SYTSILMPNTD--QPFRLNWATFSTGDKRSDNGPDLSIFVGDLAAD 196
+P + F+LN+AT+ K+ DN P+ S+FVGDL D
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPD 106
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQS 153
+++VGDL +D+ L+ F + TG+S+GYGFV+F ++ L
Sbjct: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDPTGVSKGYGFVKFTDELEQKRALTE 156
Query: 154 YTSILMPNTDQPFRLNWA 171
+ +P RL+ A
Sbjct: 157 CQGAVGLGC-KPVRLSVA 173
>sp|Q9NX07|TSAP1_HUMAN tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens
GN=TRNAU1AP PE=1 SV=1
Length = 287
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 68/106 (64%), Gaps = 6/106 (5%)
Query: 94 TIWVGDLHHWMDENYLHSCFASTGE-IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQ 152
++W+GDL +MDEN++ FA+ GE + S+K+IRN+ TG+ GY FVEF ATAEK L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 153 SYTSILMPNTD--QPFRLNWATFSTGDKRSDNGPDLSIFVGDLAAD 196
+P + F+LN+AT+ K+ DN P+ S+FVGDL D
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPD 106
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQS 153
+++VGDL +D+ L+ F + QTG+S+GYGFV+F ++ L
Sbjct: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTE 156
Query: 154 YTSILMPNTDQPFRLNWA 171
+ + +P RL+ A
Sbjct: 157 CQGAVGLGS-KPVRLSVA 173
>sp|Q9QZI7|TSAP1_RAT tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus
GN=Trnau1ap PE=1 SV=1
Length = 287
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 68/106 (64%), Gaps = 6/106 (5%)
Query: 94 TIWVGDLHHWMDENYLHSCFASTGE-IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQ 152
++W+GDL +MDEN++ FA+ GE + S+K+IRN+ TG+ GY FVEF ATAEK L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 153 SYTSILMPNTD--QPFRLNWATFSTGDKRSDNGPDLSIFVGDLAAD 196
+P + F+LN+AT+ K+ DN P+ S+FVGDL D
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPD 106
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQS 153
+++VGDL +D+ L+ F + QTG+S+GYGFV+F ++ L
Sbjct: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTE 156
Query: 154 YTSILMPNTDQPFRLNWA 171
+ +P RL+ A
Sbjct: 157 CQGAVGLGC-KPVRLSVA 173
>sp|Q1RMJ7|TSAP1_BOVIN tRNA selenocysteine 1-associated protein 1 OS=Bos taurus
GN=TRNAU1AP PE=2 SV=1
Length = 287
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 68/106 (64%), Gaps = 6/106 (5%)
Query: 94 TIWVGDLHHWMDENYLHSCFASTGE-IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQ 152
++W+GDL +MDEN++ FA+ GE + S+K+IRN+ TG+ GY FVEF ATAEK L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 153 SYTSILMPNTD--QPFRLNWATFSTGDKRSDNGPDLSIFVGDLAAD 196
+P + F+LN+AT+ K+ DN P+ S+FVGDL D
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPD 106
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQS 153
+++VGDL +D+ L+ F + QTG+S+GYGFV+F ++ L
Sbjct: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTE 156
Query: 154 YTSILMPNTDQPFRLNWA 171
+ + +P RL+ A
Sbjct: 157 CQGAIGLGS-KPVRLSVA 173
>sp|Q5R462|TSAP1_PONAB tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii
GN=TRNAU1AP PE=2 SV=1
Length = 287
Score = 94.4 bits (233), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 67/106 (63%), Gaps = 6/106 (5%)
Query: 94 TIWVGDLHHWMDENYLHSCFASTGE-IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQ 152
++W+GDL +MDEN++ FA+ GE + S+K+IRN+ TG+ GY FVEF ATAEK L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 153 SYTSILMPNTD--QPFRLNWATFSTGDKRSDNGPDLSIFVGDLAAD 196
+P + F+LN+ T+ K+ DN P+ S+FVGDL D
Sbjct: 64 KINGKPLPGATPAKRFKLNYVTYG---KQPDNSPEYSLFVGDLTPD 106
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQS 153
+++VGDL +D+ L+ F + QTG+S+GYGFV+F ++ L
Sbjct: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTE 156
Query: 154 YTSILMPNTDQPFRLNWA 171
+ + +P RL+ A
Sbjct: 157 CQGAVGLGS-KPVRLSVA 173
>sp|Q4KM14|TSP1L_DANRE tRNA selenocysteine 1-associated protein 1-like OS=Danio rerio
GN=trnau1apl PE=2 SV=1
Length = 316
Score = 87.4 bits (215), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 69/106 (65%), Gaps = 6/106 (5%)
Query: 94 TIWVGDLHHWMDENYLHSCFASTGEIA-SIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQ 152
++W+GDL +MDEN++ F++ GE A +K+I ++ TG S GY FVE A+ ++ +Q
Sbjct: 7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQ 66
Query: 153 SYTSILMPNTDQP--FRLNWATFSTGDKRSDNGPDLSIFVGDLAAD 196
L+P ++ P F+LN+AT+ KR + GP+ S+FVGDL ++
Sbjct: 67 RLNGKLVPGSNPPRKFKLNYATYG---KRPEPGPEFSVFVGDLTSE 109
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQS 153
+++VGDL +D+ LH F + G S GYGFV+F +K L+
Sbjct: 100 SVFVGDLTSEVDDYQLHQFFLKKFPSCKGAKVVTDPYGNSRGYGFVKFSDENEQKKALEE 159
Query: 154 Y 154
+
Sbjct: 160 F 160
>sp|O13759|CSX1_SCHPO RNA-binding post-transcriptional regulator csx1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=csx1 PE=1 SV=1
Length = 632
Score = 80.5 bits (197), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 67/119 (56%), Gaps = 10/119 (8%)
Query: 82 QQHQGSGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSE---GYGF 138
Q G G + T+W+GDL WMD ++ +AS E ++KV+R+K + SE Y F
Sbjct: 74 QDVAGVGSKMSDTLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASS-SETLISYCF 132
Query: 139 VEFFTHATAEKVLQSYTSILMPNTDQPFRLNWATFSTGDKRSDN----GPDLSIFVGDL 193
V+F + A AE+ L Y + ++P F+LNWAT G + +N P+ SIFVGDL
Sbjct: 133 VQFSSSAAAERALMKYNNTMIPGAHCTFKLNWAT--GGGIQHNNFVSRDPEFSIFVGDL 189
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 92 NKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVL 151
N T++VG L + E L CF G I +IK+ K G GFV++ + AEK +
Sbjct: 296 NTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGK------GCGFVQYSEKSAAEKAI 349
Query: 152 QSYTSILMPNTDQPFRLNWA 171
+ L+ + RL W
Sbjct: 350 NTMQGALVGTSH--IRLAWG 367
Score = 35.4 bits (80), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 94 TIWVGDLHHWMDENYLHSCFAST-GEIASIKVIRNKQTGLSEGYGFVEF 141
+I+VGDL +++ L F S S K+I + TGLS YGFV F
Sbjct: 183 SIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRF 231
>sp|O60176|YG41_SCHPO Uncharacterized RNA-binding protein C23E6.01c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.01c PE=1 SV=2
Length = 473
Score = 74.3 bits (181), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 67/122 (54%), Gaps = 6/122 (4%)
Query: 78 HQQQQQHQGSGGGEN----KTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLS 133
+ + + GS EN T+W+G+L W+ E ++ + + G+ +K+IRN+ TG++
Sbjct: 74 NSENTSNYGSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMN 133
Query: 134 EGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWAT-FSTGDKRSDNGPDLSIFVGD 192
GY FVEF + A + S + +P T+ F+LNWA+ +K + SIFVGD
Sbjct: 134 AGYCFVEFASPHEASSAM-SMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGD 192
Query: 193 LA 194
L+
Sbjct: 193 LS 194
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 94 TIWVGDLHHWMDENYLHSCFAST-GEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQ 152
+I+VGDL ++E ++S FAS S K++ + QT +S GYGFV F + L
Sbjct: 187 SIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALA 246
Query: 153 SYTSILMPNTDQPFRLNWAT 172
+ D+P R+ AT
Sbjct: 247 EMQGQIC--GDRPIRVGLAT 264
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 14/83 (16%)
Query: 92 NKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKV- 150
N T++VG L ++ E L F + GEI +K+ K G GFV+F +AE
Sbjct: 302 NSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGK------GCGFVQFVNRQSAEIAI 355
Query: 151 --LQSYTSILMPNTDQPFRLNWA 171
LQ Y P + RL+W
Sbjct: 356 NQLQGY-----PLGNSRIRLSWG 373
>sp|Q503H1|TSAP1_DANRE tRNA selenocysteine 1-associated protein 1 OS=Danio rerio
GN=trnau1ap PE=2 SV=1
Length = 314
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 94 TIWVGDLHHWMDENYLHSCFASTGE-IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQ 152
++W+G+L +MDE+++ FA GE + I++IR+K TG + GYGFVE E+ L+
Sbjct: 3 SLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLR 62
Query: 153 SYTSILMPNTDQPFRLNWATFSTGDKRSDNGPDLSIFVGDLAAD 196
+P P R + + G + S+FV DL D
Sbjct: 63 KVNGKPLPGATPPKRFKLSRSNYG--KQGESSTFSLFVSDLTPD 104
>sp|Q4P8R9|PABP_USTMA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=PAB1 PE=3 SV=1
Length = 651
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 5/114 (4%)
Query: 82 QQHQGSGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEF 141
+Q + N +++VG+L + E L F+ G +ASI+V R+ T S GY +V F
Sbjct: 36 EQRNNADAANNTSLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRRSLGYAYVNF 95
Query: 142 FTHATAEKVLQSYTSILMPNTDQPFRLNWATFSTGDKRSDNGPDLSIFVGDLAA 195
A E+ ++ L+ N +P R+ W+ +R+ G +IF+ +L A
Sbjct: 96 LNAADGERAMEQLNYSLIRN--RPCRIMWSQRDPALRRTGQG---NIFIKNLDA 144
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 95 IWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSY 154
I++ +L +D LH FA+ G I S KV N +TG S GYGFV + T AE ++
Sbjct: 137 IFIKNLDAGIDNKALHDTFAAFGNILSCKVATN-ETG-SLGYGFVHYETAEAAEAAIKHV 194
Query: 155 TSILM 159
+L+
Sbjct: 195 NGMLL 199
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 95 IWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSY 154
+++ ++ D+ L FA G I S K++R +G+S G+GFV + A K +
Sbjct: 332 LYLKNIPESYDDERLREEFAPFGAITSCKIMR-APSGVSRGFGFVCYSAPEEANKAVSEM 390
Query: 155 TSILMPN 161
++ N
Sbjct: 391 NGKMLDN 397
Score = 36.2 bits (82), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 68 YQHHHQPHLQHQQQQQHQGSGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRN 127
Y HH P + Q + + + ++ ++ + ++ F G+I S V++
Sbjct: 205 YVGHHIPRKERQAKIEETRA---NFTNVYAKNVDPEVTDDEFEKLFTKFGKITSC-VLQR 260
Query: 128 KQTGLSEGYGFVEFFTHATAEKVL 151
+ G S+G+GFV F H A+K +
Sbjct: 261 DEDGKSKGFGFVNFEDHNEAQKAV 284
>sp|Q13117|DAZ2_HUMAN Deleted in azoospermia protein 2 OS=Homo sapiens GN=DAZ2 PE=1 SV=3
Length = 558
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 93 KTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQ 152
T++VG + MDE + SCF G + +K+I N+ TG+S+GYGFV F +K++
Sbjct: 40 NTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVG 98
Query: 153 S 153
S
Sbjct: 99 S 99
>sp|Q9NR90|DAZ3_HUMAN Deleted in azoospermia protein 3 OS=Homo sapiens GN=DAZ3 PE=1 SV=1
Length = 486
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 93 KTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQ 152
T++VG + MDE + SCF G + +K+I N+ TG+S+GYGFV F +K++
Sbjct: 40 NTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVG 98
Query: 153 S 153
S
Sbjct: 99 S 99
>sp|Q95192|DAZL_MACFA Deleted in azoospermia-like OS=Macaca fascicularis GN=DAZL PE=2
SV=3
Length = 295
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQS 153
T++VG + MDE + S FA G + +K+I ++ TG+S+GYGFV FF +K+++S
Sbjct: 41 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFFNDVDVQKIVES 99
>sp|Q92904|DAZL_HUMAN Deleted in azoospermia-like OS=Homo sapiens GN=DAZL PE=1 SV=1
Length = 295
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQS 153
T++VG + MDE + S FA G + +K+I ++ TG+S+GYGFV FF +K+++S
Sbjct: 41 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFFNDVDVQKIVES 99
>sp|Q86SG3|DAZ4_HUMAN Deleted in azoospermia protein 4 OS=Homo sapiens GN=DAZ4 PE=1 SV=2
Length = 579
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQS 153
T++VG + MDE + SCF G + +K+I N+ TG+S+GYGFV F +K++ S
Sbjct: 41 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVGS 99
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQS 153
T++VG + MDE + SCF G + +K+I N+ TG+S+GYGFV F +K++ S
Sbjct: 206 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVGS 264
>sp|Q9NQZ3|DAZ1_HUMAN Deleted in azoospermia protein 1 OS=Homo sapiens GN=DAZ1 PE=1 SV=2
Length = 744
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQS 153
T++VG + MDE + SCF G + +K+I N+ TG+S+GYGFV F +K++ S
Sbjct: 41 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVGS 99
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQS 153
T++VG + MDE + SCF G + +K+I N+ TG+S+GYGFV F +K++ S
Sbjct: 206 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVGS 264
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQS 153
T++VG + MDE + SCF G + +K+I N+ TG+S+GYGFV F +K++ S
Sbjct: 371 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVGS 429
>sp|Q9BGN8|DAZL_CALJA Deleted in azoospermia-like OS=Callithrix jacchus GN=DAZL PE=2 SV=1
Length = 296
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQS 153
T++VG + MDE + FA G + +K+I ++ TG+S+GYGFV FF +K+++S
Sbjct: 41 TVFVGGIDVRMDETEIRGFFARYGSVKEVKIITDR-TGVSKGYGFVSFFNDVDVQKIVES 99
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Query: 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQS 153
+++VG+L + E L+ F+S G++ASI+V R+ T S GY +V + A E+ L+
Sbjct: 49 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 108
Query: 154 YTSILMPNTDQPFRLNWATFSTGDKRSDNGPDLSIFVGDLAA 195
L+ +P R+ W+ +++ G ++F+ +L A
Sbjct: 109 LNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDA 145
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 95 IWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSY 154
+++ +L +D LH FA+ G I S KV ++ + G S+GYGFV + T A ++
Sbjct: 138 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 196
Query: 155 TSILM 159
+L+
Sbjct: 197 NGMLL 201
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 95 IWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVL 151
+++ +L + E F GEI S + R+ Q G S G+GFV + TH +A+ +
Sbjct: 231 VYIKNLDQEISEEEFRQMFEKFGEITSATLSRD-QEGKSRGFGFVNYSTHDSAQAAV 286
>sp|Q64368|DAZL_MOUSE Deleted in azoospermia-like OS=Mus musculus GN=Dazl PE=1 SV=1
Length = 298
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQS 153
T++VG + MDE + S FA G + +K+I ++ TG+S+GYGFV F+ +K+++S
Sbjct: 41 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVES 99
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQS 153
+++VGDLH + E L+ F+ G I SI+V R+ T S GY ++ F A AE+ L +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 154 YTSILMPNTDQPFRLNWATFSTGDKRSDNGPDLSIFVGDL 193
++ QP R+ W+ G ++S G +IF+ +L
Sbjct: 72 MNFEMLKG--QPIRIMWSQRDPGLRKSGVG---NIFIKNL 106
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 78 HQQQQQHQGSGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYG 137
++++ G+ E I+V +L +DE L F+ G++ S+KV+R+ +G S +G
Sbjct: 176 RREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFG 234
Query: 138 FVEFFTHATAEKVL 151
FV F H A+K +
Sbjct: 235 FVNFEKHEEAQKAV 248
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 95 IWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSY 154
I++ +L +D L+ F++ G I S KV ++ S G+GFV F TH A++ + +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTM 158
Query: 155 TSILM 159
+L+
Sbjct: 159 NGMLL 163
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
Query: 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQS 153
+++VG+L + E L F+ G +ASI+V R+ T S GY +V + T A EK L+
Sbjct: 61 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 120
Query: 154 YTSILMPNTDQPFRLNWATFSTGDKRSDNGPDLSIFVGDLAA 195
L+ +P R+ W+ +++ G +IF+ +L A
Sbjct: 121 LNYTLIKG--RPCRIMWSQRDPALRKTGAG---NIFIKNLDA 157
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 95 IWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSY 154
I++ +L +D LH FA+ G I S KV +++ G S+GYGFV + T A + ++
Sbjct: 150 IFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEH-GNSKGYGFVHYETDEAASQAIKHV 208
Query: 155 TSILM 159
+L+
Sbjct: 209 NGMLL 213
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 68 YQHHHQPHLQHQQQQQHQGSGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRN 127
Y HH P Q + + + ++V ++++ + + FA GE+ S + R+
Sbjct: 219 YVGHHIPKKDRQSKFEEMKA---NFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARD 275
Query: 128 KQTGLSEGYGFVEFFTHATAEKVL 151
Q G S G+GFV F TH A + +
Sbjct: 276 -QEGKSRGFGFVNFTTHEAAAQAV 298
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Query: 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQS 153
+++VG+L + E L+ F+S G++ASI+V R+ T S GY +V + A E+ L+
Sbjct: 53 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 112
Query: 154 YTSILMPNTDQPFRLNWATFSTGDKRSDNGPDLSIFVGDLAA 195
L+ +P R+ W+ +++ G ++F+ +L A
Sbjct: 113 LNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDA 149
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 95 IWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSY 154
+++ +L +D LH FA+ G I S KV ++ + G S+GYGFV + T A ++
Sbjct: 142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 200
Query: 155 TSILM 159
+L+
Sbjct: 201 NGMLL 205
Score = 37.7 bits (86), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 95 IWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVL 151
+++ ++ + + F GEI S + R+ Q G S G+GFV F TH +A+ +
Sbjct: 235 VYIKNIDQEVTDEEFRKMFEKFGEITSATLSRD-QEGKSRGFGFVNFSTHDSAQAAV 290
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQS 153
+++VG+L + E L+ F+S G++ASI+V R+ T S GY +V + A E+ L+
Sbjct: 55 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 154 YTSILMPNTDQPFRLNWATFSTGDKRSDNGPDLSIFVGDL 193
L+ +P R+ W+ +++ G ++F+ +L
Sbjct: 115 LNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNL 149
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 95 IWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSY 154
+++ +L +D LH FA+ G I S KV ++ + G S+GYGFV + T A ++
Sbjct: 144 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 202
Query: 155 TSILM 159
+L+
Sbjct: 203 NGMLL 207
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 95 IWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQ 152
+++ +L +D++ F GEI S + R+ Q G S G+GFV F TH +A+ ++
Sbjct: 237 VYIKNLDSEIDDDEFRKMFEKFGEITSATLSRD-QEGKSRGFGFVNFSTHESAQAAVE 293
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQS 153
+++VG+L + E L+ F+S G++ASI+V R+ T S GY +V + A E+ L+
Sbjct: 52 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 111
Query: 154 YTSILMPNTDQPFRLNWATFSTGDKRSDNGPDLSIFVGDL 193
L+ +P R+ W+ +++ G ++F+ +L
Sbjct: 112 LNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNL 146
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 95 IWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSY 154
+++ +L +D LH FA+ G I S KV ++ + G S+GYGFV + T A ++
Sbjct: 141 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 199
Query: 155 TSILM 159
+L+
Sbjct: 200 NGMLL 204
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 95 IWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVL 151
I++ ++ + E F GEI S + R+ + G S G+GFV + TH +A+ +
Sbjct: 234 IYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPE-GKSRGFGFVNYSTHESAQAAV 289
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Query: 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQS 153
+++VG+L + E L+ F+S G++ASI+V R+ T S GY +V + A E+ L+
Sbjct: 53 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 112
Query: 154 YTSILMPNTDQPFRLNWATFSTGDKRSDNGPDLSIFVGDLAA 195
L+ +P R+ W+ +++ G ++F+ +L A
Sbjct: 113 LNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDA 149
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 95 IWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSY 154
+++ +L +D LH FA+ G I S KV ++ + G S+GYGFV + T A ++
Sbjct: 142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 200
Query: 155 TSILM 159
+L+
Sbjct: 201 NGMLL 205
Score = 37.7 bits (86), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 95 IWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVL 151
+++ ++ + + F GEI S + R+ Q G S G+GFV F TH +A+ +
Sbjct: 235 VYIKNIDQEVTDEEFRKMFEKFGEITSATLSRD-QEGKSRGFGFVNFSTHDSAQAAV 290
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQS 153
+++VG+L + E L+ F+S G++ASI+V R+ T S GY +V + A E+ L+
Sbjct: 50 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 109
Query: 154 YTSILMPNTDQPFRLNWATFSTGDKRSDNGPDLSIFVGDL 193
L+ +P R+ W+ +++ G ++F+ +L
Sbjct: 110 LNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNL 144
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 95 IWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSY 154
+++ +L +D LH FA+ G I S KV ++ + G S+GYGFV + T A ++
Sbjct: 139 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 197
Query: 155 TSILM 159
+L+
Sbjct: 198 NGMLL 202
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 95 IWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVL 151
+++ ++ + E F GEI S + R+ Q G S G+GFV F TH +A+ +
Sbjct: 232 VYIKNIDQDVTEEEFRELFEKFGEITSATLSRD-QEGKSRGFGFVNFSTHESAQAAV 287
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 62/114 (54%), Gaps = 6/114 (5%)
Query: 81 QQQHQGSGGGENK-TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFV 139
++Q + SG EN +++VG+L+ ++E L F+ G+++SI+V R+ + S GY +V
Sbjct: 39 EEQGESSGVAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYV 98
Query: 140 EFFTHATAEKVLQSYTSILMPNTDQPFRLNWATFSTGDKRSDNGPDLSIFVGDL 193
+ + EK ++ P +P R+ W+ +RS +G +IF+ +L
Sbjct: 99 NYHKYEDGEKAIEELN--YNPIEGRPCRIMWSQRDPSARRSGDG---NIFIKNL 147
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQ 152
I+V ++ E F+ G+I SI + Q G S+G+GFV F H +A K ++
Sbjct: 234 NIYVKNIDLNYSEESFEKLFSPFGKITSI-YLEKDQDGKSKGFGFVNFEDHESAVKAVE 291
Score = 36.2 bits (82), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQS 153
++V +L +D L F G I S KV+ + + G S+G+GFV F T A K +
Sbjct: 337 NLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVD-EAGKSKGFGFVCFTTPEEATKAITE 395
Query: 154 YTSILM 159
+ ++
Sbjct: 396 MNTRMI 401
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 87 SGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEF 141
SG G I++ +LH +D LH F++ G+I S KV + + G S+ +GFV +
Sbjct: 137 SGDG---NIFIKNLHPAIDNKALHDTFSAFGKILSCKVATD-EFGQSKCFGFVHY 187
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 5/100 (5%)
Query: 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQS 153
+++VG+L + E L F+ G +ASI+V R+ T S GY +V + T A EK L+
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 121
Query: 154 YTSILMPNTDQPFRLNWATFSTGDKRSDNGPDLSIFVGDL 193
L+ +P R+ W+ +++ G ++F+ +L
Sbjct: 122 LNYTLIKG--RPCRIMWSQRDPALRKTGQG---NVFIKNL 156
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%)
Query: 95 IWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQ 152
I+V +++ + ++ + F G++ S + R+++TG S G+GFV F +H A K +Q
Sbjct: 244 IYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQ 301
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 95 IWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSY 154
+++ +L +D LH FA+ G I S KV ++ + G S+GYGFV + T A + ++
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAASQAIKHV 209
Query: 155 TSILM 159
+L+
Sbjct: 210 NGMLL 214
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQS 153
+++VGDLH + E L+ F+ G I SI+V R+ T S GY ++ F A AE+ L +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 154 YTSILMPNTDQPFRLNWATFSTGDKRSDNGPDLSIFVGDL 193
++ +P R+ W+ G ++S G ++F+ +L
Sbjct: 72 MNFEVIKG--RPIRIMWSQRDPGLRKSGVG---NVFIKNL 106
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 95 IWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSY 154
+++ +L +D L+ F++ G I S KV+ ++ S GYGFV F T A + +Q+
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETQEAANRAIQTM 158
Query: 155 TSILM 159
+L+
Sbjct: 159 NGMLL 163
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 75 HLQHQQQQQHQ-GSGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLS 133
H + +++++ + G+ E +++ + MD+ L F++ G S+KV+ + TG S
Sbjct: 172 HFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRS 230
Query: 134 EGYGFVEFFTHATAEKVL 151
G+GFV + H A+K +
Sbjct: 231 RGFGFVNYGNHEEAQKAV 248
>sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAB1
PE=3 SV=2
Length = 631
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 54/99 (54%), Gaps = 5/99 (5%)
Query: 95 IWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSY 154
++VG+L+ ++E L F+ G+++SI+V R+ T S GY +V F HA + ++
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 155 TSILMPNTDQPFRLNWATFSTGDKRSDNGPDLSIFVGDL 193
L+ +P R+ W+ +R+ +G +IF+ +L
Sbjct: 120 NYSLV--DGRPCRIMWSQRDPSLRRNGDG---NIFIKNL 153
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEF 141
I++ +LH +D LH F++ G I S KV + + G S+ +GFV +
Sbjct: 147 NIFIKNLHPAIDNKALHDTFSAFGRILSCKVATD-ELGQSKCFGFVHY 193
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 60/115 (52%), Gaps = 14/115 (12%)
Query: 81 QQQHQGSGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVE 140
QQ HQ S +++VG+L + E L F+S G++ASI+V R+ T S GY +V
Sbjct: 41 QQAHQNSA-----SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVN 95
Query: 141 FFTHATAEKVLQ--SYTSILMPNTDQPFRLNWATFSTGDKRSDNGPDLSIFVGDL 193
+ + EK L+ +YT I +P R+ W+ +++ G ++F+ +L
Sbjct: 96 YNSSEDGEKALEELNYTVI----KGKPCRIMWSQRDPALRKTGQG---NVFIKNL 143
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 95 IWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSY 154
+++ +L H +D LH FA+ G I S KV ++ + G S+GYGFV + T A ++
Sbjct: 138 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQD-ELGNSKGYGFVHYETAEAANNAIKHV 196
Query: 155 TSILM 159
+L+
Sbjct: 197 NGMLL 201
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Query: 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQS 153
+++VGDLH + E L+ F+ G I SI+V R+ T S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 154 YTSILMPNTDQPFRLNWATFSTGDKRSDNGPDLSIFVGDL 193
++ +P R+ W+ ++S G +IF+ +L
Sbjct: 72 MNFDVIKG--RPVRIMWSQRDPSLRKSGVG---NIFIKNL 106
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 95 IWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSY 154
I++ +L +D L+ F++ G I S KV+ ++ S+GYGFV F T AE+ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKM 158
Query: 155 TSILM 159
+L+
Sbjct: 159 NGMLL 163
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 78 HQQQQQHQGSGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYG 137
++++ G+ E +++ + M++ L F G S+KV+ + G S+G+G
Sbjct: 176 RKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFG 234
Query: 138 FVEFFTHATAEKVL 151
FV F H A+K +
Sbjct: 235 FVSFERHEDAQKAV 248
>sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1
Length = 439
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATA 147
G G ++VG LH + E+ L F G+I +I ++++ TG S+GYGF+ F A
Sbjct: 258 GNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 317
Query: 148 EKVLQSYTSILMPNTDQPFRLNWATFSTGDKRSDNGPDLSIFVGD 192
+ L+ + +P R+ T +R D G D++ GD
Sbjct: 318 RRALEQLNGFELAG--RPMRVGHVT-----ERLDGGTDITFPDGD 355
Score = 35.4 bits (80), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/86 (19%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 60 PPYMPYHQYQHHHQPHLQHQ----QQQQHQGSGGGENKTIWVGDLHHWMDENYLHSCFAS 115
PP ++Y H PH + + + + + +T++ L + L F++
Sbjct: 129 PPLATGYRYGHSKSPHFREKSPVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSA 188
Query: 116 TGEIASIKVIRNKQTGLSEGYGFVEF 141
G++ +++I ++ + S+G +VEF
Sbjct: 189 VGKVRDVRIISDRNSRRSKGIAYVEF 214
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Query: 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQS 153
+++VG+L + E L F+S G++ASI+V R+ T S GY +V + A E+ L+
Sbjct: 56 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 154 YTSILMPNTDQPFRLNWATFSTGDKRSDNGPDLSIFVGDL 193
L+ +P R+ W+ +++ G ++F+ +L
Sbjct: 116 LNYTLIKG--RPCRIMWSQRDPALRKTGQG---NVFIKNL 150
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 95 IWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSY 154
+++ +L +D LH FA+ G I S KV ++ + G S+GYGFV + T A+ ++
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAAQNAIKHV 203
Query: 155 TSILM 159
+L+
Sbjct: 204 NGMLL 208
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 95 IWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQS 153
++V ++ E F GEI S + R+ ++G S G+GFV F +H A +++
Sbjct: 238 VYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEA 296
>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp
PE=1 SV=3
Length = 634
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 55/100 (55%), Gaps = 5/100 (5%)
Query: 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQS 153
+++VGDL ++E+ L F+S G + SI+V R+ T S GY +V F A AE+ L +
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 154 YTSILMPNTDQPFRLNWATFSTGDKRSDNGPDLSIFVGDL 193
L+ N +P R+ W+ +RS G ++F+ +L
Sbjct: 63 MNFDLVRN--KPIRIMWSQRDPSLRRSGVG---NVFIKNL 97
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 95 IWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSY 154
+++ +L +D ++ F++ G I S KV +++ G S+GYGFV F T A +
Sbjct: 92 VFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEK-GNSKGYGFVHFETEEAANTSIDKV 150
Query: 155 TSILM 159
+L+
Sbjct: 151 NGMLL 155
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 78 HQQQQQHQGSGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYG 137
+++++ G ++V + D+ L F G+I S KV+ +K+ G S+G+G
Sbjct: 168 RKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFG 226
Query: 138 FVEFFTHATAEKVLQS 153
FV F T AE +Q+
Sbjct: 227 FVAFETTEAAEAAVQA 242
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQS 153
++++GDLH + E L+ F+ G I SI+V R+ T S GY ++ F A AE+ L +
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 154 YTSILMPNTDQPFRLNWATFSTGDKRSDNGPDLSIFVGDL 193
++ +P R+ W+ G ++S G ++F+ +L
Sbjct: 72 MNFEVIKG--RPIRIMWSQRDPGLRKSGVG---NVFIKNL 106
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 95 IWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSY 154
+++ +L +D L+ F++ G+I S KV+ ++ S GYGFV F T A + +Q+
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG--SRGYGFVHFETQEAANRAIQTM 158
Query: 155 TSILM 159
+L+
Sbjct: 159 NGMLL 163
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 75 HLQHQQQQQHQ-GSGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLS 133
H + +++++ + G+ E +++ + MD+ L F++ G S+KV+ + +G S
Sbjct: 172 HFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMD-NSGRS 230
Query: 134 EGYGFVEFFTHATAEKVL 151
G+GFV + H A+K +
Sbjct: 231 RGFGFVNYGNHEEAQKAV 248
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQS 153
+++VG+L+ ++E L F+ G++ASI+V R+ T S GY +V F EK ++
Sbjct: 52 SLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIED 111
Query: 154 YTSILMPNTDQPFRLNWATFSTGDKRSDNGPDLSIFVGDL 193
L+ +P R+ W+ +R+ +G +IF+ +L
Sbjct: 112 LNYSLIEG--RPCRIMWSQRDPSLRRNGDG---NIFIKNL 146
Score = 37.4 bits (85), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEF 141
I++ +LH +D LH F + G+I S KV + G+S+ +GFV +
Sbjct: 140 NIFIKNLHPAIDNKALHDTFTAFGKILSCKVATD-DMGISKCFGFVHY 186
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Query: 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQS 153
+++VGDLH + E L+ F+ G I SI+V R+ T S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 154 YTSILMPNTDQPFRLNWATFSTGDKRSDNGPDLSIFVGDL 193
++ +P R+ W+ ++S G +IF+ +L
Sbjct: 72 MNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNL 106
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 95 IWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSY 154
I++ +L +D L+ F++ G I S KV+ ++ S+GYGFV F T AE+ ++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 155 TSILM 159
+L+
Sbjct: 159 NGMLL 163
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 78 HQQQQQHQGSGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYG 137
++++ G+ E +++ + MD+ L F G S+KV+ + ++G S+G+G
Sbjct: 176 RKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFG 234
Query: 138 FVEFFTHATAEKVL 151
FV F H A+K +
Sbjct: 235 FVSFERHEDAQKAV 248
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Query: 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQS 153
+++VGDLH + E L+ F+ G I SI+V R+ T S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 154 YTSILMPNTDQPFRLNWATFSTGDKRSDNGPDLSIFVGDL 193
++ +P R+ W+ ++S G +IF+ +L
Sbjct: 72 MNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNL 106
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 95 IWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSY 154
I++ +L +D L+ F++ G I S KV+ ++ S+GYGFV F T AE+ ++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 155 TSILM 159
+L+
Sbjct: 159 NGMLL 163
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 78 HQQQQQHQGSGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYG 137
++++ G+ E +++ + MD+ L F G S+KV+ + ++G S+G+G
Sbjct: 176 RKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFG 234
Query: 138 FVEFFTHATAEKVL 151
FV F H A+K +
Sbjct: 235 FVSFERHEDAQKAV 248
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Query: 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQS 153
+++VGDLH + E L+ F+ G I SI+V R+ T S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 154 YTSILMPNTDQPFRLNWATFSTGDKRSDNGPDLSIFVGDL 193
++ +P R+ W+ ++S G +IF+ +L
Sbjct: 72 MNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNL 106
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 95 IWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSY 154
I++ +L +D L+ F++ G I S KV+ ++ S+GYGFV F T AE+ ++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 155 TSILM 159
+L+
Sbjct: 159 NGMLL 163
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 78 HQQQQQHQGSGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYG 137
++++ G+ E +++ + MD+ L F G S+KV+ + ++G S+G+G
Sbjct: 176 RKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFG 234
Query: 138 FVEFFTHATAEKVL 151
FV F H A+K +
Sbjct: 235 FVSFERHEDAQKAV 248
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,095,027
Number of Sequences: 539616
Number of extensions: 3735085
Number of successful extensions: 63676
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1252
Number of HSP's successfully gapped in prelim test: 778
Number of HSP's that attempted gapping in prelim test: 29168
Number of HSP's gapped (non-prelim): 18574
length of query: 196
length of database: 191,569,459
effective HSP length: 111
effective length of query: 85
effective length of database: 131,672,083
effective search space: 11192127055
effective search space used: 11192127055
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)