Query 037458
Match_columns 196
No_of_seqs 329 out of 1758
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 12:30:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037458.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037458hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 99.9 2.4E-22 5.1E-27 167.2 12.9 102 88-196 103-204 (346)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 1.7E-21 3.8E-26 162.8 12.1 99 91-196 2-100 (352)
3 PLN03134 glycine-rich RNA-bind 99.9 7E-21 1.5E-25 140.1 13.0 87 87-175 29-115 (144)
4 TIGR01628 PABP-1234 polyadenyl 99.8 3.1E-20 6.8E-25 164.3 12.2 98 94-196 2-99 (562)
5 TIGR01645 half-pint poly-U bin 99.8 3.3E-20 7.2E-25 162.6 11.6 107 88-196 103-215 (612)
6 KOG0148 Apoptosis-promoting RN 99.8 8.7E-20 1.9E-24 142.5 10.2 103 91-195 61-174 (321)
7 KOG0131 Splicing factor 3b, su 99.8 7.4E-20 1.6E-24 135.4 7.5 103 88-196 5-107 (203)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 5.8E-19 1.3E-23 147.5 12.4 84 89-174 266-349 (352)
9 KOG0145 RNA-binding protein EL 99.8 5.8E-19 1.3E-23 137.4 10.1 101 88-195 37-137 (360)
10 TIGR01648 hnRNP-R-Q heterogene 99.8 6.9E-19 1.5E-23 154.0 11.7 94 90-196 56-149 (578)
11 KOG0144 RNA-binding protein CU 99.8 2.8E-19 6.1E-24 147.3 8.4 104 88-195 30-134 (510)
12 KOG0149 Predicted RNA-binding 99.8 5.1E-19 1.1E-23 135.8 8.8 84 88-174 8-91 (247)
13 KOG0117 Heterogeneous nuclear 99.8 1.1E-18 2.4E-23 144.3 10.6 94 90-195 81-174 (506)
14 KOG0122 Translation initiation 99.8 1.2E-18 2.6E-23 134.3 9.6 84 89-174 186-269 (270)
15 TIGR01659 sex-lethal sex-letha 99.8 2.9E-18 6.2E-23 142.8 11.8 84 91-174 192-275 (346)
16 TIGR01622 SF-CC1 splicing fact 99.8 6.4E-18 1.4E-22 146.0 13.2 105 89-196 86-197 (457)
17 KOG0121 Nuclear cap-binding pr 99.8 1.9E-18 4.1E-23 121.2 7.7 83 89-173 33-115 (153)
18 KOG0125 Ataxin 2-binding prote 99.8 4.1E-18 9E-23 136.2 10.0 92 84-179 88-179 (376)
19 PF00076 RRM_1: RNA recognitio 99.7 1.2E-17 2.5E-22 107.5 8.5 70 95-167 1-70 (70)
20 TIGR01645 half-pint poly-U bin 99.7 5.5E-17 1.2E-21 142.5 11.4 86 90-177 202-287 (612)
21 TIGR01628 PABP-1234 polyadenyl 99.7 7.1E-17 1.5E-21 142.9 11.9 103 91-196 87-189 (562)
22 KOG0107 Alternative splicing f 99.7 8.8E-17 1.9E-21 118.4 8.7 79 90-175 8-86 (195)
23 TIGR01642 U2AF_lg U2 snRNP aux 99.7 2.9E-16 6.3E-21 137.3 13.6 83 90-174 293-375 (509)
24 PLN03120 nucleic acid binding 99.7 2.1E-16 4.5E-21 124.9 10.5 76 92-173 4-79 (260)
25 PLN03213 repressor of silencin 99.7 2.1E-16 4.6E-21 132.6 9.6 81 88-174 6-88 (759)
26 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.7 8.6E-16 1.9E-20 133.7 13.8 78 89-173 272-350 (481)
27 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.7 5.3E-16 1.1E-20 135.0 12.4 96 92-195 2-106 (481)
28 KOG0113 U1 small nuclear ribon 99.7 3.6E-16 7.8E-21 123.8 10.1 84 87-172 96-179 (335)
29 KOG0130 RNA-binding protein RB 99.7 2.5E-16 5.4E-21 111.5 8.0 85 88-174 68-152 (170)
30 KOG0111 Cyclophilin-type pepti 99.7 5.4E-17 1.2E-21 123.7 4.4 86 90-177 8-93 (298)
31 KOG4207 Predicted splicing fac 99.7 2.1E-16 4.6E-21 119.3 7.4 86 88-175 9-94 (256)
32 PF14259 RRM_6: RNA recognitio 99.7 4.5E-16 9.8E-21 100.5 7.8 70 95-167 1-70 (70)
33 KOG0144 RNA-binding protein CU 99.7 1.1E-16 2.5E-21 132.0 6.2 85 91-176 123-208 (510)
34 KOG0109 RNA-binding protein LA 99.7 1.8E-16 3.9E-21 125.2 6.3 86 93-195 3-88 (346)
35 TIGR01648 hnRNP-R-Q heterogene 99.6 1.1E-15 2.5E-20 133.9 11.1 107 90-196 136-244 (578)
36 KOG0148 Apoptosis-promoting RN 99.6 1.2E-15 2.5E-20 119.5 9.7 84 87-178 159-242 (321)
37 KOG0126 Predicted RNA-binding 99.6 1.9E-17 4.1E-22 122.7 -0.5 82 90-173 33-114 (219)
38 KOG0108 mRNA cleavage and poly 99.6 5.4E-16 1.2E-20 131.4 8.2 82 93-176 19-100 (435)
39 TIGR01622 SF-CC1 splicing fact 99.6 1.5E-15 3.4E-20 131.2 10.5 80 92-173 186-265 (457)
40 KOG0105 Alternative splicing f 99.6 2.1E-15 4.6E-20 112.2 9.6 102 89-195 3-125 (241)
41 COG0724 RNA-binding proteins ( 99.6 1.1E-14 2.3E-19 115.8 12.0 79 92-172 115-193 (306)
42 PLN03121 nucleic acid binding 99.6 7E-15 1.5E-19 114.6 10.1 76 91-172 4-79 (243)
43 smart00362 RRM_2 RNA recogniti 99.6 1.1E-14 2.3E-19 93.0 8.8 71 94-168 1-71 (72)
44 KOG4205 RNA-binding protein mu 99.6 4.9E-15 1.1E-19 120.8 7.4 104 90-196 4-108 (311)
45 smart00360 RRM RNA recognition 99.6 1.8E-14 4E-19 91.6 8.6 70 97-168 1-70 (71)
46 KOG0124 Polypyrimidine tract-b 99.6 1.8E-15 3.9E-20 123.0 4.4 104 91-196 112-221 (544)
47 KOG0127 Nucleolar protein fibr 99.6 2.3E-14 4.9E-19 121.6 11.0 80 91-173 116-195 (678)
48 KOG0117 Heterogeneous nuclear 99.6 1.4E-14 3E-19 120.2 9.4 107 89-195 161-269 (506)
49 KOG0145 RNA-binding protein EL 99.6 2.9E-14 6.3E-19 111.3 10.2 86 86-173 272-357 (360)
50 TIGR01642 U2AF_lg U2 snRNP aux 99.6 3.3E-14 7.2E-19 124.4 11.5 76 87-171 170-257 (509)
51 cd00590 RRM RRM (RNA recogniti 99.5 1.4E-13 3.1E-18 88.2 9.8 74 94-170 1-74 (74)
52 KOG0114 Predicted RNA-binding 99.5 1E-13 2.2E-18 94.0 8.7 78 90-172 16-93 (124)
53 KOG0123 Polyadenylate-binding 99.5 6.2E-14 1.3E-18 117.7 9.3 86 93-196 2-87 (369)
54 KOG0127 Nucleolar protein fibr 99.5 1.8E-13 3.9E-18 116.2 9.3 102 92-195 5-127 (678)
55 KOG0146 RNA-binding protein ET 99.5 1.1E-13 2.4E-18 108.5 6.4 86 87-174 280-365 (371)
56 KOG0146 RNA-binding protein ET 99.4 1.7E-13 3.6E-18 107.5 6.6 86 89-175 16-102 (371)
57 KOG0131 Splicing factor 3b, su 99.4 2.2E-13 4.7E-18 101.2 6.3 89 87-177 91-180 (203)
58 PF13893 RRM_5: RNA recognitio 99.4 7.7E-13 1.7E-17 81.7 7.1 56 109-171 1-56 (56)
59 smart00361 RRM_1 RNA recogniti 99.4 9.9E-13 2.2E-17 85.1 7.6 61 106-168 2-69 (70)
60 KOG0147 Transcriptional coacti 99.4 2.6E-13 5.7E-18 115.3 5.8 81 91-173 277-357 (549)
61 KOG0415 Predicted peptidyl pro 99.4 5.1E-13 1.1E-17 108.3 6.4 82 90-173 237-318 (479)
62 KOG0132 RNA polymerase II C-te 99.4 1.1E-12 2.4E-17 115.2 7.4 76 92-175 421-496 (894)
63 KOG4212 RNA-binding protein hn 99.3 7.6E-12 1.7E-16 104.0 9.8 82 89-173 41-123 (608)
64 KOG1457 RNA binding protein (c 99.3 3.7E-11 8E-16 92.2 12.7 92 88-179 30-123 (284)
65 KOG4206 Spliceosomal protein s 99.3 1.1E-11 2.4E-16 95.2 8.9 81 90-175 7-91 (221)
66 KOG0123 Polyadenylate-binding 99.3 8.4E-12 1.8E-16 104.9 9.0 97 93-194 77-176 (369)
67 KOG0110 RNA-binding protein (R 99.3 1.1E-11 2.5E-16 108.1 9.4 102 93-196 516-624 (725)
68 KOG4661 Hsp27-ERE-TATA-binding 99.3 9.3E-12 2E-16 106.5 8.6 88 90-179 403-490 (940)
69 KOG4208 Nucleolar RNA-binding 99.3 1.6E-11 3.4E-16 93.0 8.2 85 88-174 45-130 (214)
70 KOG0124 Polypyrimidine tract-b 99.3 1.2E-11 2.5E-16 100.9 7.1 85 88-174 206-290 (544)
71 KOG0153 Predicted RNA-binding 99.3 3.1E-11 6.6E-16 97.8 9.0 79 88-173 224-302 (377)
72 KOG0109 RNA-binding protein LA 99.2 2E-11 4.2E-16 96.9 5.4 75 89-173 75-149 (346)
73 KOG0226 RNA-binding proteins [ 99.2 3E-11 6.5E-16 94.2 5.4 84 87-172 185-268 (290)
74 PF04059 RRM_2: RNA recognitio 99.2 4.6E-10 1E-14 76.6 9.8 82 92-173 1-86 (97)
75 KOG4212 RNA-binding protein hn 99.2 1.1E-10 2.4E-15 97.3 7.7 78 87-171 531-608 (608)
76 KOG0110 RNA-binding protein (R 99.1 3.9E-11 8.5E-16 104.8 5.1 83 90-174 611-693 (725)
77 KOG4205 RNA-binding protein mu 99.1 1.9E-10 4.1E-15 94.0 6.8 81 91-174 96-176 (311)
78 KOG4209 Splicing factor RNPS1, 99.1 2.2E-10 4.7E-15 90.4 5.8 84 88-174 97-180 (231)
79 KOG0533 RRM motif-containing p 99.0 1.8E-09 3.9E-14 85.2 9.6 84 88-174 79-162 (243)
80 KOG0106 Alternative splicing f 99.0 4.6E-10 9.9E-15 86.9 5.2 71 93-173 2-72 (216)
81 KOG1548 Transcription elongati 99.0 2.2E-09 4.7E-14 87.2 8.7 82 90-174 132-221 (382)
82 KOG4454 RNA binding protein (R 99.0 3E-10 6.4E-15 87.0 3.2 81 88-172 5-85 (267)
83 KOG4660 Protein Mei2, essentia 99.0 7.1E-10 1.5E-14 94.8 5.6 74 87-167 70-143 (549)
84 KOG4211 Splicing factor hnRNP- 98.9 8.1E-09 1.7E-13 87.3 10.8 102 88-195 6-113 (510)
85 KOG0151 Predicted splicing reg 98.9 3E-09 6.6E-14 93.2 7.1 83 89-173 171-256 (877)
86 KOG0116 RasGAP SH3 binding pro 98.9 5.6E-09 1.2E-13 88.6 8.5 81 90-173 286-366 (419)
87 KOG0147 Transcriptional coacti 98.7 2E-09 4.2E-14 92.0 0.4 105 88-195 175-288 (549)
88 KOG1995 Conserved Zn-finger pr 98.6 4E-08 8.6E-13 80.3 5.3 85 89-175 63-155 (351)
89 KOG0129 Predicted RNA-binding 98.6 3.1E-07 6.6E-12 78.4 9.6 63 91-154 258-326 (520)
90 KOG0120 Splicing factor U2AF, 98.5 8.8E-08 1.9E-12 82.5 4.9 85 88-174 285-369 (500)
91 KOG4849 mRNA cleavage factor I 98.5 8.8E-08 1.9E-12 78.1 4.5 82 88-170 76-159 (498)
92 KOG1457 RNA binding protein (c 98.5 1.2E-07 2.5E-12 73.2 4.7 70 87-160 205-274 (284)
93 KOG1190 Polypyrimidine tract-b 98.5 1E-06 2.2E-11 73.4 9.7 76 92-174 297-373 (492)
94 KOG4206 Spliceosomal protein s 98.4 1.2E-06 2.6E-11 67.7 8.0 78 89-172 143-220 (221)
95 PF11608 Limkain-b1: Limkain b 98.4 3.2E-06 7E-11 55.6 7.4 69 93-173 3-76 (90)
96 KOG4210 Nuclear localization s 98.3 8.5E-07 1.8E-11 72.3 4.2 82 91-175 183-265 (285)
97 PF08777 RRM_3: RNA binding mo 98.2 3.9E-06 8.4E-11 58.4 6.3 59 93-157 2-60 (105)
98 KOG1855 Predicted RNA-binding 98.2 3E-06 6.5E-11 70.9 5.0 72 87-158 226-310 (484)
99 KOG4211 Splicing factor hnRNP- 98.1 8.5E-06 1.8E-10 69.4 7.5 79 90-172 101-180 (510)
100 COG5175 MOT2 Transcriptional r 98.1 6.8E-06 1.5E-10 67.0 6.5 80 92-173 114-202 (480)
101 KOG0129 Predicted RNA-binding 98.1 1.1E-05 2.4E-10 69.1 7.8 65 89-153 367-432 (520)
102 KOG2314 Translation initiation 98.1 1.6E-05 3.5E-10 68.8 8.3 79 90-170 56-140 (698)
103 KOG3152 TBP-binding protein, a 98.1 3.4E-06 7.3E-11 66.3 3.7 71 91-161 73-155 (278)
104 KOG1456 Heterogeneous nuclear 98.0 8.3E-05 1.8E-09 61.6 11.4 80 87-173 282-362 (494)
105 KOG1190 Polypyrimidine tract-b 98.0 1.6E-05 3.6E-10 66.3 6.8 78 91-173 149-227 (492)
106 KOG1456 Heterogeneous nuclear 98.0 4.4E-05 9.5E-10 63.2 9.0 84 87-175 115-200 (494)
107 KOG0106 Alternative splicing f 97.9 8E-06 1.7E-10 63.5 3.4 75 89-173 96-170 (216)
108 PF14605 Nup35_RRM_2: Nup53/35 97.9 3.7E-05 8E-10 46.7 5.2 52 93-151 2-53 (53)
109 KOG2253 U1 snRNP complex, subu 97.9 3E-05 6.6E-10 68.2 6.2 71 90-169 38-108 (668)
110 KOG4307 RNA binding protein RB 97.8 7E-05 1.5E-09 66.4 8.0 77 91-170 866-943 (944)
111 KOG0112 Large RNA-binding prot 97.8 7.1E-06 1.5E-10 74.2 0.8 96 90-195 370-465 (975)
112 KOG0105 Alternative splicing f 97.7 0.0003 6.6E-09 53.1 8.8 68 89-163 112-179 (241)
113 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.00015 3.3E-09 49.8 5.7 79 91-172 5-90 (100)
114 KOG0112 Large RNA-binding prot 97.6 8.7E-05 1.9E-09 67.4 5.6 81 88-174 451-531 (975)
115 KOG2416 Acinus (induces apopto 97.6 8.8E-05 1.9E-09 64.7 4.5 81 88-174 440-522 (718)
116 KOG0120 Splicing factor U2AF, 97.5 0.00025 5.3E-09 61.6 6.8 63 108-172 425-490 (500)
117 KOG1365 RNA-binding protein Fu 97.5 0.00017 3.8E-09 59.9 5.2 78 92-172 280-360 (508)
118 PF10309 DUF2414: Protein of u 97.5 0.00086 1.9E-08 41.8 6.8 55 92-154 5-62 (62)
119 KOG1548 Transcription elongati 97.4 0.0011 2.4E-08 54.5 8.9 80 87-172 260-350 (382)
120 KOG2193 IGF-II mRNA-binding pr 97.4 9E-05 1.9E-09 62.3 2.1 75 93-174 2-76 (584)
121 KOG0128 RNA-binding protein SA 97.4 1.2E-05 2.5E-10 72.5 -3.6 69 91-159 666-734 (881)
122 KOG4210 Nuclear localization s 97.3 0.00026 5.7E-09 57.8 3.8 104 90-196 86-196 (285)
123 KOG0115 RNA-binding protein p5 97.2 0.00043 9.4E-09 54.7 4.4 75 93-168 32-108 (275)
124 KOG1996 mRNA splicing factor [ 97.2 0.0011 2.4E-08 53.5 6.6 65 106-172 300-365 (378)
125 KOG4660 Protein Mei2, essentia 97.2 0.00068 1.5E-08 58.8 5.4 83 91-173 360-472 (549)
126 KOG0128 RNA-binding protein SA 97.2 0.00025 5.3E-09 64.2 2.5 77 91-170 735-811 (881)
127 PF08952 DUF1866: Domain of un 97.1 0.0023 5E-08 46.7 6.8 74 90-174 25-107 (146)
128 KOG1365 RNA-binding protein Fu 97.1 0.0023 4.9E-08 53.5 7.4 68 90-159 159-230 (508)
129 KOG4676 Splicing factor, argin 97.1 0.00084 1.8E-08 56.0 4.6 68 91-159 6-76 (479)
130 KOG2202 U2 snRNP splicing fact 97.0 0.00045 9.7E-09 54.6 2.4 54 115-171 92-145 (260)
131 PF08675 RNA_bind: RNA binding 96.9 0.0047 1E-07 40.7 6.0 57 91-156 8-64 (87)
132 PF07576 BRAP2: BRCA1-associat 96.8 0.019 4.2E-07 40.1 9.2 69 91-161 12-81 (110)
133 KOG4574 RNA-binding protein (c 96.6 0.0017 3.8E-08 58.9 3.0 75 94-174 300-374 (1007)
134 KOG2068 MOT2 transcription fac 96.6 0.001 2.2E-08 54.6 1.4 79 93-173 78-162 (327)
135 PF15023 DUF4523: Protein of u 96.5 0.024 5.2E-07 41.3 7.9 75 88-172 82-160 (166)
136 PF03467 Smg4_UPF3: Smg-4/UPF3 96.3 0.0041 8.9E-08 47.3 3.2 84 90-173 5-97 (176)
137 PF03880 DbpA: DbpA RNA bindin 96.1 0.044 9.6E-07 35.4 7.2 67 94-171 2-74 (74)
138 KOG4307 RNA binding protein RB 96.0 0.02 4.2E-07 51.5 6.5 80 89-171 431-511 (944)
139 KOG2318 Uncharacterized conser 95.9 0.054 1.2E-06 47.7 8.5 84 89-172 171-306 (650)
140 KOG4285 Mitotic phosphoprotein 95.9 0.053 1.1E-06 44.1 7.8 70 92-170 197-266 (350)
141 PF04847 Calcipressin: Calcipr 95.6 0.029 6.2E-07 43.0 5.2 62 105-174 8-71 (184)
142 KOG2135 Proteins containing th 95.5 0.01 2.2E-07 50.9 2.6 73 93-174 373-446 (526)
143 PF11767 SET_assoc: Histone ly 95.4 0.063 1.4E-06 34.0 5.5 49 103-160 11-59 (66)
144 KOG2591 c-Mpl binding protein, 95.1 0.069 1.5E-06 46.9 6.5 58 91-155 174-233 (684)
145 KOG0804 Cytoplasmic Zn-finger 95.0 0.12 2.7E-06 44.2 7.6 67 92-160 74-141 (493)
146 KOG0226 RNA-binding proteins [ 94.4 0.026 5.6E-07 44.9 2.0 104 89-195 93-200 (290)
147 KOG4410 5-formyltetrahydrofola 93.6 0.3 6.5E-06 39.6 6.6 50 90-145 328-378 (396)
148 COG5638 Uncharacterized conser 92.6 0.59 1.3E-05 39.8 7.3 88 85-172 139-296 (622)
149 KOG2891 Surface glycoprotein [ 91.6 0.062 1.4E-06 43.4 0.4 84 90-173 147-267 (445)
150 KOG4483 Uncharacterized conser 88.9 1.5 3.3E-05 37.3 6.3 56 91-153 390-446 (528)
151 KOG4676 Splicing factor, argin 87.9 0.11 2.4E-06 43.8 -0.8 66 89-159 148-213 (479)
152 PF10567 Nab6_mRNP_bdg: RNA-re 87.5 1.9 4.2E-05 35.2 5.9 86 87-172 10-106 (309)
153 KOG4454 RNA binding protein (R 87.4 0.13 2.8E-06 40.2 -0.7 72 87-159 75-150 (267)
154 PF03468 XS: XS domain; Inter 86.2 0.75 1.6E-05 32.5 2.7 46 104-152 29-75 (116)
155 PF07530 PRE_C2HC: Associated 85.8 1.9 4E-05 27.4 4.1 62 107-173 2-64 (68)
156 KOG4849 mRNA cleavage factor I 85.5 4.5 9.7E-05 34.0 7.1 27 97-123 350-376 (498)
157 KOG2295 C2H2 Zn-finger protein 79.2 0.25 5.4E-06 43.5 -2.3 70 91-160 230-299 (648)
158 KOG4019 Calcineurin-mediated s 79.0 2.4 5.2E-05 32.2 3.1 76 92-174 10-90 (193)
159 smart00596 PRE_C2HC PRE_C2HC d 78.7 4.4 9.6E-05 25.8 3.8 61 107-172 2-63 (69)
160 PF07292 NID: Nmi/IFP 35 domai 75.9 4.7 0.0001 27.0 3.5 58 137-195 1-62 (88)
161 COG0724 RNA-binding proteins ( 74.8 5.3 0.00011 30.9 4.3 59 88-146 221-279 (306)
162 KOG2193 IGF-II mRNA-binding pr 67.8 0.27 5.8E-06 42.0 -4.7 75 91-171 79-154 (584)
163 PRK14548 50S ribosomal protein 67.0 33 0.00072 22.7 6.0 56 95-153 23-80 (84)
164 KOG4008 rRNA processing protei 67.0 5.8 0.00013 31.5 2.7 36 87-122 35-70 (261)
165 PF09707 Cas_Cas2CT1978: CRISP 66.4 15 0.00033 24.4 4.3 49 91-142 24-72 (86)
166 PF15513 DUF4651: Domain of un 65.6 18 0.0004 22.4 4.2 18 107-124 9-26 (62)
167 KOG3424 40S ribosomal protein 63.7 33 0.00071 24.3 5.7 46 103-149 34-84 (132)
168 TIGR03636 L23_arch archaeal ri 62.3 40 0.00088 21.9 6.1 55 95-152 16-72 (77)
169 PRK10905 cell division protein 60.4 39 0.00084 28.2 6.5 61 91-156 246-308 (328)
170 PF14893 PNMA: PNMA 59.9 16 0.00036 30.6 4.4 76 90-172 16-95 (331)
171 PF00403 HMA: Heavy-metal-asso 59.5 36 0.00077 20.3 6.1 54 94-153 1-58 (62)
172 PRK11558 putative ssRNA endonu 58.5 20 0.00043 24.5 3.8 50 91-143 26-75 (97)
173 PRK11901 hypothetical protein; 56.8 46 0.00099 27.8 6.4 63 90-157 243-307 (327)
174 PRK01178 rps24e 30S ribosomal 55.6 42 0.00092 22.9 5.1 46 103-149 30-80 (99)
175 COG5353 Uncharacterized protei 53.8 85 0.0018 23.2 6.6 55 92-146 87-154 (161)
176 PF07292 NID: Nmi/IFP 35 domai 52.1 7.3 0.00016 26.1 0.9 24 89-112 49-72 (88)
177 COG2608 CopZ Copper chaperone 51.4 59 0.0013 20.4 5.6 45 93-143 4-48 (71)
178 KOG1295 Nonsense-mediated deca 50.0 19 0.00042 30.6 3.2 71 90-160 5-78 (376)
179 COG5193 LHP1 La protein, small 48.8 7.4 0.00016 33.3 0.6 61 92-152 174-244 (438)
180 KOG1546 Metacaspase involved i 47.5 1.7E+02 0.0037 24.6 11.3 76 90-174 62-149 (362)
181 PF03439 Spt5-NGN: Early trans 45.1 29 0.00063 22.7 3.0 25 132-156 42-66 (84)
182 TIGR01873 cas_CT1978 CRISPR-as 44.4 47 0.001 22.1 3.8 50 91-143 24-74 (87)
183 PF08544 GHMP_kinases_C: GHMP 44.1 81 0.0017 19.9 5.9 43 107-155 37-80 (85)
184 PTZ00071 40S ribosomal protein 43.7 69 0.0015 23.1 4.8 45 103-148 35-85 (132)
185 PF11411 DNA_ligase_IV: DNA li 43.2 20 0.00043 19.7 1.6 16 102-117 19-34 (36)
186 KOG4213 RNA-binding protein La 41.9 36 0.00078 26.0 3.3 57 92-153 111-169 (205)
187 PF13046 DUF3906: Protein of u 41.7 32 0.0007 21.5 2.5 33 105-139 31-63 (64)
188 PF08734 GYD: GYD domain; Int 41.2 1.1E+02 0.0023 20.4 6.4 44 107-154 23-67 (91)
189 PF15407 Spo7_2_N: Sporulation 40.0 9.9 0.00021 24.0 0.1 26 89-114 24-49 (67)
190 PF04026 SpoVG: SpoVG; InterP 39.7 62 0.0013 21.4 3.8 26 118-143 2-27 (84)
191 PF01071 GARS_A: Phosphoribosy 39.4 1.5E+02 0.0032 22.9 6.5 61 105-169 25-86 (194)
192 PF14401 RLAN: RimK-like ATPgr 36.1 82 0.0018 23.3 4.5 60 91-150 86-146 (153)
193 PRK04199 rpl10e 50S ribosomal 35.9 1.9E+02 0.0042 21.9 6.5 64 90-160 79-157 (172)
194 PF02714 DUF221: Domain of unk 35.9 36 0.00077 28.0 2.8 21 137-157 1-21 (325)
195 PTZ00191 60S ribosomal protein 35.0 1.8E+02 0.0039 21.4 5.9 53 95-150 84-138 (145)
196 KOG0156 Cytochrome P450 CYP2 s 34.5 1E+02 0.0022 27.4 5.5 56 96-161 36-94 (489)
197 PF00585 Thr_dehydrat_C: C-ter 34.3 1.4E+02 0.003 19.8 5.4 65 92-158 9-75 (91)
198 PRK11230 glycolate oxidase sub 33.9 2.3E+02 0.0049 25.2 7.6 63 93-156 190-256 (499)
199 PRK13259 regulatory protein Sp 33.9 81 0.0018 21.4 3.7 50 118-174 2-51 (94)
200 COG5178 PRP8 U5 snRNP spliceos 33.6 51 0.0011 32.7 3.6 38 91-128 71-108 (2365)
201 COG0217 Uncharacterized conser 33.3 2.5E+02 0.0055 22.5 7.8 38 91-128 93-136 (241)
202 PRK11634 ATP-dependent RNA hel 33.0 3.3E+02 0.0071 25.1 8.7 69 93-172 487-561 (629)
203 TIGR01033 DNA-binding regulato 32.1 2.2E+02 0.0047 22.8 6.5 44 92-142 94-143 (238)
204 PF05189 RTC_insert: RNA 3'-te 32.1 97 0.0021 20.9 4.1 48 94-141 12-64 (103)
205 PF01282 Ribosomal_S24e: Ribos 32.0 1.5E+02 0.0033 19.4 6.1 47 102-149 11-62 (84)
206 KOG4365 Uncharacterized conser 31.2 6.3 0.00014 34.1 -2.4 59 93-152 4-62 (572)
207 KOG4840 Predicted hydrolases o 30.6 1.2E+02 0.0027 24.3 4.7 65 90-159 35-105 (299)
208 COG0648 Nfo Endonuclease IV [D 30.0 72 0.0016 26.2 3.6 70 105-177 153-222 (280)
209 PF00398 RrnaAD: Ribosomal RNA 29.6 50 0.0011 26.4 2.6 24 91-114 96-119 (262)
210 PF14385 DUF4416: Domain of un 29.3 1.4E+02 0.0029 22.5 4.7 52 92-143 4-66 (164)
211 PF15063 TC1: Thyroid cancer p 29.1 40 0.00086 21.8 1.5 30 90-119 23-52 (79)
212 cd04908 ACT_Bt0572_1 N-termina 29.0 1.4E+02 0.0029 18.0 8.0 44 106-153 15-59 (66)
213 COG0030 KsgA Dimethyladenosine 29.0 92 0.002 25.2 4.0 33 92-124 95-127 (259)
214 PF11823 DUF3343: Protein of u 29.0 81 0.0018 19.8 3.0 25 135-159 2-26 (73)
215 PF05929 Phage_GPO: Phage caps 28.9 1.2E+02 0.0027 24.8 4.7 28 112-139 52-81 (276)
216 PF07876 Dabb: Stress responsi 28.7 1.7E+02 0.0036 18.9 7.2 54 96-149 5-69 (97)
217 KOG2855 Ribokinase [Carbohydra 28.6 94 0.002 26.1 4.1 29 89-117 58-86 (330)
218 PF04127 DFP: DNA / pantothena 28.5 2.2E+02 0.0047 21.7 5.8 60 93-154 19-79 (185)
219 PRK06545 prephenate dehydrogen 28.2 3.6E+02 0.0078 22.6 8.5 63 90-155 288-352 (359)
220 COG5507 Uncharacterized conser 28.1 68 0.0015 21.9 2.6 21 134-154 66-86 (117)
221 PF14713 DUF4464: Domain of un 28.0 1.6E+02 0.0034 23.5 5.0 36 109-144 92-127 (233)
222 CHL00123 rps6 ribosomal protei 27.7 1.9E+02 0.0042 19.4 6.8 58 93-152 9-80 (97)
223 PF10281 Ish1: Putative stress 27.4 68 0.0015 17.4 2.1 18 103-120 3-20 (38)
224 PRK02302 hypothetical protein; 26.5 2E+02 0.0043 19.3 4.6 39 112-159 22-60 (89)
225 PRK08559 nusG transcription an 25.9 1.6E+02 0.0035 21.5 4.6 33 119-156 36-68 (153)
226 cd00027 BRCT Breast Cancer Sup 25.7 1.2E+02 0.0027 17.5 3.4 28 93-120 2-29 (72)
227 COG2088 SpoVG Uncharacterized 25.5 1.2E+02 0.0025 20.3 3.3 27 118-144 2-28 (95)
228 COG2004 RPS24A Ribosomal prote 24.7 2.5E+02 0.0053 19.5 5.5 45 103-148 31-80 (107)
229 PF14581 SseB_C: SseB protein 24.7 1.7E+02 0.0037 19.7 4.3 80 92-172 5-89 (108)
230 KOG2187 tRNA uracil-5-methyltr 24.1 69 0.0015 28.6 2.6 38 134-173 63-100 (534)
231 COG5470 Uncharacterized conser 24.1 1.9E+02 0.0042 19.6 4.2 41 109-151 25-70 (96)
232 PF07237 DUF1428: Protein of u 23.9 2.5E+02 0.0054 19.3 5.9 47 108-154 24-85 (103)
233 PRK02886 hypothetical protein; 23.9 2.3E+02 0.005 18.9 4.6 39 112-159 20-58 (87)
234 PF13689 DUF4154: Domain of un 23.3 2.9E+02 0.0062 19.8 6.5 35 135-172 27-61 (145)
235 PF10915 DUF2709: Protein of u 23.3 2.4E+02 0.0052 21.9 5.0 45 118-175 36-80 (238)
236 KOG1888 Putative phosphoinosit 23.2 2.6E+02 0.0056 26.6 6.1 62 92-159 309-373 (868)
237 KOG2854 Possible pfkB family c 23.0 1.1E+02 0.0023 25.8 3.4 66 91-157 159-234 (343)
238 KOG2943 Predicted glyoxalase [ 22.9 3.5E+02 0.0076 21.9 6.0 30 130-159 205-238 (299)
239 PF13820 Nucleic_acid_bd: Puta 22.9 2E+02 0.0044 21.2 4.5 60 93-156 5-67 (149)
240 cd06233 Peptidase_M14-like_6 P 22.8 82 0.0018 25.9 2.7 52 90-141 176-228 (283)
241 TIGR00279 L10e ribosomal prote 22.6 3.3E+02 0.0072 20.6 5.7 63 91-160 80-157 (172)
242 PRK00110 hypothetical protein; 22.4 3.9E+02 0.0085 21.4 6.4 44 92-142 94-143 (245)
243 cd01611 GABARAP Ubiquitin doma 22.4 1.4E+02 0.003 20.8 3.5 24 93-117 72-95 (112)
244 cd04889 ACT_PDH-BS-like C-term 22.4 1.7E+02 0.0036 16.8 5.9 42 107-151 13-55 (56)
245 PHA03008 hypothetical protein; 22.3 1.6E+02 0.0035 23.0 3.9 39 88-126 17-55 (234)
246 KOG0125 Ataxin 2-binding prote 22.2 87 0.0019 26.3 2.7 16 180-195 91-106 (376)
247 PF09902 DUF2129: Uncharacteri 22.0 2.2E+02 0.0049 18.1 4.5 39 112-159 16-54 (71)
248 PF14111 DUF4283: Domain of un 22.0 90 0.002 22.3 2.6 32 95-126 107-139 (153)
249 cd04878 ACT_AHAS N-terminal AC 21.4 1.9E+02 0.004 16.9 7.6 50 105-156 13-64 (72)
250 PF09162 Tap-RNA_bind: Tap, RN 21.4 1.5E+02 0.0033 19.8 3.3 58 104-168 18-77 (88)
251 PF10994 DUF2817: Protein of u 21.3 1.1E+02 0.0023 26.0 3.1 53 91-143 178-231 (341)
252 PF09702 Cas_Csa5: CRISPR-asso 21.1 1.4E+02 0.003 20.6 3.0 24 89-115 61-84 (105)
253 PF14657 Integrase_AP2: AP2-li 21.1 1.7E+02 0.0037 16.4 3.6 29 126-154 9-37 (46)
254 PF11004 Kdo_hydroxy: 3-deoxy- 20.8 2.1E+02 0.0046 23.4 4.5 47 89-136 18-65 (281)
255 TIGR02542 B_forsyth_147 Bacter 20.8 65 0.0014 22.8 1.5 44 101-144 83-129 (145)
256 cd04894 ACT_ACR-like_1 ACT dom 20.7 1.7E+02 0.0036 18.4 3.1 30 107-142 15-45 (69)
257 cd04880 ACT_AAAH-PDT-like ACT 20.5 2.2E+02 0.0048 17.5 6.5 50 106-156 13-66 (75)
258 COG3102 Uncharacterized protei 20.2 3.2E+02 0.0069 20.7 5.1 76 102-179 49-156 (185)
259 KOG1579 Homocysteine S-methylt 20.1 2.9E+02 0.0062 23.2 5.3 71 98-179 135-205 (317)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.88 E-value=2.4e-22 Score=167.21 Aligned_cols=102 Identities=22% Similarity=0.406 Sum_probs=91.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
.....++|||+||++++|+++|+++|+.||.|++|+|++|+.|++++|||||+|.+.++|++||+.|++..|. +++|+
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~--gr~i~ 180 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVR--NKRLK 180 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccC--Cceee
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999995 69999
Q ss_pred EEeccCCCCCCCCCCCCCceEEecCCCCC
Q 037458 168 LNWATFSTGDKRSDNGPDLSIFVGDLAAD 196 (196)
Q Consensus 168 v~~a~~~~~~~~~~~~~~~~ifV~nL~~d 196 (196)
|.|++.... .....+|||+||+.+
T Consensus 181 V~~a~p~~~-----~~~~~~lfV~nLp~~ 204 (346)
T TIGR01659 181 VSYARPGGE-----SIKDTNLYVTNLPRT 204 (346)
T ss_pred eeccccccc-----ccccceeEEeCCCCc
Confidence 999875432 234568999999974
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.86 E-value=1.7e-21 Score=162.79 Aligned_cols=99 Identities=29% Similarity=0.481 Sum_probs=89.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNW 170 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~ 170 (196)
...+|||+|||.++++++|+++|+.||.|.+|+|++|+.+|+++|||||+|.+.++|++||+.|||..|. ++.|+|+|
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~--g~~i~v~~ 79 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQ--NKTIKVSY 79 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEEC--CeeEEEEe
Confidence 4689999999999999999999999999999999999999999999999999999999999999999995 69999999
Q ss_pred ccCCCCCCCCCCCCCceEEecCCCCC
Q 037458 171 ATFSTGDKRSDNGPDLSIFVGDLAAD 196 (196)
Q Consensus 171 a~~~~~~~~~~~~~~~~ifV~nL~~d 196 (196)
++.... .....+|||+||+.+
T Consensus 80 a~~~~~-----~~~~~~l~v~~l~~~ 100 (352)
T TIGR01661 80 ARPSSD-----SIKGANLYVSGLPKT 100 (352)
T ss_pred eccccc-----ccccceEEECCcccc
Confidence 875432 234568999999864
No 3
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.86 E-value=7e-21 Score=140.15 Aligned_cols=87 Identities=26% Similarity=0.397 Sum_probs=80.6
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 87 SGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 87 ~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
......++|||+||++++++++|+++|++||.|++|+|+.|+.|++++|||||+|.+.++|++||+.||+..|. ++.|
T Consensus 29 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~--Gr~l 106 (144)
T PLN03134 29 SLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELN--GRHI 106 (144)
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC--CEEE
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999995 6999
Q ss_pred EEEeccCCC
Q 037458 167 RLNWATFST 175 (196)
Q Consensus 167 ~v~~a~~~~ 175 (196)
+|+|++...
T Consensus 107 ~V~~a~~~~ 115 (144)
T PLN03134 107 RVNPANDRP 115 (144)
T ss_pred EEEeCCcCC
Confidence 999997654
No 4
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.83 E-value=3.1e-20 Score=164.26 Aligned_cols=98 Identities=32% Similarity=0.493 Sum_probs=88.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEeccC
Q 037458 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWATF 173 (196)
Q Consensus 94 ~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~a~~ 173 (196)
+||||||+.++||++|+++|+.||.|.+|+|++|+.|++++|||||+|.+.++|++||+.||+..|. ++.|+|.|+.+
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~--gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLG--GKPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC--CeeEEeecccc
Confidence 7999999999999999999999999999999999999999999999999999999999999999884 69999999876
Q ss_pred CCCCCCCCCCCCceEEecCCCCC
Q 037458 174 STGDKRSDNGPDLSIFVGDLAAD 196 (196)
Q Consensus 174 ~~~~~~~~~~~~~~ifV~nL~~d 196 (196)
+...++. ...+|||+||+.|
T Consensus 80 ~~~~~~~---~~~~vfV~nLp~~ 99 (562)
T TIGR01628 80 DPSLRRS---GVGNIFVKNLDKS 99 (562)
T ss_pred ccccccc---CCCceEEcCCCcc
Confidence 6554443 3458999999975
No 5
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.83 E-value=3.3e-20 Score=162.60 Aligned_cols=107 Identities=18% Similarity=0.308 Sum_probs=91.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
.....++||||||++++++++|+++|+.||.|++|++++|+.||+++|||||+|.+.++|++|++.|||..|. |+.|+
T Consensus 103 a~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~--GR~Ik 180 (612)
T TIGR01645 103 ALAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLG--GRNIK 180 (612)
T ss_pred hhcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEe--cceee
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999995 69999
Q ss_pred EEeccCCCCCC------CCCCCCCceEEecCCCCC
Q 037458 168 LNWATFSTGDK------RSDNGPDLSIFVGDLAAD 196 (196)
Q Consensus 168 v~~a~~~~~~~------~~~~~~~~~ifV~nL~~d 196 (196)
|.+........ ..+....++|||+||+++
T Consensus 181 V~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~ 215 (612)
T TIGR01645 181 VGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPD 215 (612)
T ss_pred ecccccccccccccccccccccccceEEeecCCCC
Confidence 98765432111 122334579999999975
No 6
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=8.7e-20 Score=142.47 Aligned_cols=103 Identities=34% Similarity=0.598 Sum_probs=93.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNW 170 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~ 170 (196)
...-||||.|...++.++|++.|.+||+|.+++|++|..|+++|||+||.|.++++|+.||..|||.=|+ +|.||-+|
T Consensus 61 ~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG--~R~IRTNW 138 (321)
T KOG0148|consen 61 QHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLG--RRTIRTNW 138 (321)
T ss_pred cceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeec--cceeeccc
Confidence 3667999999999999999999999999999999999999999999999999999999999999999884 69999999
Q ss_pred ccCCCCCCC-----------CCCCCCceEEecCCCC
Q 037458 171 ATFSTGDKR-----------SDNGPDLSIFVGDLAA 195 (196)
Q Consensus 171 a~~~~~~~~-----------~~~~~~~~ifV~nL~~ 195 (196)
|.+++.+.. .....+.+||||||+.
T Consensus 139 ATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~ 174 (321)
T KOG0148|consen 139 ATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIAS 174 (321)
T ss_pred cccCccccCCCCccHHHHhccCCCCCceEEeCCcCc
Confidence 998874433 2356788999999975
No 7
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.81 E-value=7.4e-20 Score=135.36 Aligned_cols=103 Identities=24% Similarity=0.475 Sum_probs=90.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
+.....|||||||+..++++.|+++|-.+|.|+++++.+|+.|...+|||||+|.++++|+-|++.||...+ .|++|+
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkL--YgrpIr 82 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKL--YGRPIR 82 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHh--cCceeE
Confidence 445678999999999999999999999999999999999999999999999999999999999999998888 579999
Q ss_pred EEeccCCCCCCCCCCCCCceEEecCCCCC
Q 037458 168 LNWATFSTGDKRSDNGPDLSIFVGDLAAD 196 (196)
Q Consensus 168 v~~a~~~~~~~~~~~~~~~~ifV~nL~~d 196 (196)
|+.+..... . .....++|||||+++
T Consensus 83 v~kas~~~~--n--l~vganlfvgNLd~~ 107 (203)
T KOG0131|consen 83 VNKASAHQK--N--LDVGANLFVGNLDPE 107 (203)
T ss_pred EEecccccc--c--ccccccccccccCcc
Confidence 999883222 2 233479999999874
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.80 E-value=5.8e-19 Score=147.54 Aligned_cols=84 Identities=25% Similarity=0.404 Sum_probs=78.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEE
Q 037458 89 GGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRL 168 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v 168 (196)
....++|||+||++++++++|+++|+.||.|.+|+|++|+.|+.++|||||+|.+.++|.+||..|||..|+ |+.|+|
T Consensus 266 ~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~--gr~i~V 343 (352)
T TIGR01661 266 DGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLG--NRVLQV 343 (352)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEEC--CeEEEE
Confidence 345668999999999999999999999999999999999999999999999999999999999999999995 699999
Q ss_pred EeccCC
Q 037458 169 NWATFS 174 (196)
Q Consensus 169 ~~a~~~ 174 (196)
+|+..+
T Consensus 344 ~~~~~~ 349 (352)
T TIGR01661 344 SFKTNK 349 (352)
T ss_pred EEccCC
Confidence 998754
No 9
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=5.8e-19 Score=137.37 Aligned_cols=101 Identities=30% Similarity=0.486 Sum_probs=91.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
..+..+.|.|.-||-++|+++|+.+|...|+|++|++++|+.+|.+.||+||.|.+.++|++|+..|||..+- .+.|+
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ--~KTIK 114 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQ--NKTIK 114 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeec--cceEE
Confidence 3455677999999999999999999999999999999999999999999999999999999999999999995 58999
Q ss_pred EEeccCCCCCCCCCCCCCceEEecCCCC
Q 037458 168 LNWATFSTGDKRSDNGPDLSIFVGDLAA 195 (196)
Q Consensus 168 v~~a~~~~~~~~~~~~~~~~ifV~nL~~ 195 (196)
|+||+.+... -.+.++||++||.
T Consensus 115 VSyARPSs~~-----Ik~aNLYvSGlPk 137 (360)
T KOG0145|consen 115 VSYARPSSDS-----IKDANLYVSGLPK 137 (360)
T ss_pred EEeccCChhh-----hcccceEEecCCc
Confidence 9999976543 3456899999984
No 10
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.79 E-value=6.9e-19 Score=153.97 Aligned_cols=94 Identities=19% Similarity=0.405 Sum_probs=83.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEE
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLN 169 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~ 169 (196)
...++|||+||+++++|++|+++|++||.|.+|+|++| .+|+++|||||+|.+.++|++||+.||+..|.. ++.|.|+
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~-Gr~l~V~ 133 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRP-GRLLGVC 133 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecC-Ccccccc
Confidence 45689999999999999999999999999999999999 789999999999999999999999999998852 5777776
Q ss_pred eccCCCCCCCCCCCCCceEEecCCCCC
Q 037458 170 WATFSTGDKRSDNGPDLSIFVGDLAAD 196 (196)
Q Consensus 170 ~a~~~~~~~~~~~~~~~~ifV~nL~~d 196 (196)
++. ...+|||+|||.+
T Consensus 134 ~S~-----------~~~rLFVgNLP~~ 149 (578)
T TIGR01648 134 ISV-----------DNCRLFVGGIPKN 149 (578)
T ss_pred ccc-----------cCceeEeecCCcc
Confidence 643 2458999999864
No 11
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=2.8e-19 Score=147.28 Aligned_cols=104 Identities=24% Similarity=0.462 Sum_probs=92.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCC-CCCCCCCccE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTS-ILMPNTDQPF 166 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g-~~~~~~~~~i 166 (196)
.+.+.-+||||-||..++|++|+++|++||.|.+|.|++||.|+.++|||||.|.++++|.+|+.+|+. +.|.+....|
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 446678899999999999999999999999999999999999999999999999999999999999988 5677778899
Q ss_pred EEEeccCCCCCCCCCCCCCceEEecCCCC
Q 037458 167 RLNWATFSTGDKRSDNGPDLSIFVGDLAA 195 (196)
Q Consensus 167 ~v~~a~~~~~~~~~~~~~~~~ifV~nL~~ 195 (196)
.|.||+.+..+ ...+++||||-|+.
T Consensus 110 qvk~Ad~E~er----~~~e~KLFvg~lsK 134 (510)
T KOG0144|consen 110 QVKYADGERER----IVEERKLFVGMLSK 134 (510)
T ss_pred eecccchhhhc----cccchhhhhhhccc
Confidence 99999865332 35678999998864
No 12
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.79 E-value=5.1e-19 Score=135.81 Aligned_cols=84 Identities=30% Similarity=0.451 Sum_probs=73.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
.+..-++||||+|+|.+..++|+++|++||+|++..|+.|+.||++||||||+|.+.++|++|++. -.-.|+ ||+..
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piId--GR~aN 84 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIID--GRKAN 84 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCccc--ccccc
Confidence 344567899999999999999999999999999999999999999999999999999999999974 344564 68888
Q ss_pred EEeccCC
Q 037458 168 LNWATFS 174 (196)
Q Consensus 168 v~~a~~~ 174 (196)
+++|.-+
T Consensus 85 cnlA~lg 91 (247)
T KOG0149|consen 85 CNLASLG 91 (247)
T ss_pred cchhhhc
Confidence 8877653
No 13
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=1.1e-18 Score=144.33 Aligned_cols=94 Identities=18% Similarity=0.386 Sum_probs=87.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEE
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLN 169 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~ 169 (196)
...+.||||.||.++.|++|.-+|++.|+|-+++|+.|+.+|.+||||||+|.+.++|.+||+.||+.+|. .|+.|+|+
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir-~GK~igvc 159 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR-PGKLLGVC 159 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCcccc-CCCEeEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999998 58999999
Q ss_pred eccCCCCCCCCCCCCCceEEecCCCC
Q 037458 170 WATFSTGDKRSDNGPDLSIFVGDLAA 195 (196)
Q Consensus 170 ~a~~~~~~~~~~~~~~~~ifV~nL~~ 195 (196)
.+- .+++|||||||-
T Consensus 160 ~Sv-----------an~RLFiG~IPK 174 (506)
T KOG0117|consen 160 VSV-----------ANCRLFIGNIPK 174 (506)
T ss_pred Eee-----------ecceeEeccCCc
Confidence 865 456999999985
No 14
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=1.2e-18 Score=134.33 Aligned_cols=84 Identities=29% Similarity=0.472 Sum_probs=79.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEE
Q 037458 89 GGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRL 168 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v 168 (196)
-++..+|-|.||+.+++|++|+++|..||.|.+|.|.+|++||.+||||||.|.++++|.+||+.|||.-+++ ..|+|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~--LILrv 263 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDN--LILRV 263 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccce--EEEEE
Confidence 3477889999999999999999999999999999999999999999999999999999999999999999964 88999
Q ss_pred EeccCC
Q 037458 169 NWATFS 174 (196)
Q Consensus 169 ~~a~~~ 174 (196)
+|++..
T Consensus 264 EwskP~ 269 (270)
T KOG0122|consen 264 EWSKPS 269 (270)
T ss_pred EecCCC
Confidence 999864
No 15
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.77 E-value=2.9e-18 Score=142.83 Aligned_cols=84 Identities=21% Similarity=0.448 Sum_probs=79.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNW 170 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~ 170 (196)
..++|||+||+.++|+++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.||+..+.+.++.|+|.|
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999987678999999
Q ss_pred ccCC
Q 037458 171 ATFS 174 (196)
Q Consensus 171 a~~~ 174 (196)
++..
T Consensus 272 a~~~ 275 (346)
T TIGR01659 272 AEEH 275 (346)
T ss_pred CCcc
Confidence 9864
No 16
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.76 E-value=6.4e-18 Score=145.98 Aligned_cols=105 Identities=21% Similarity=0.376 Sum_probs=88.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEE
Q 037458 89 GGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRL 168 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v 168 (196)
....++|||+||+.++++++|+++|+.||.|.+|+|++|+.+++++|||||+|.+.++|.+||. |+|..+. |+.|.|
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~--g~~i~v 162 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLL--GRPIIV 162 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEEC--CeeeEE
Confidence 4457899999999999999999999999999999999999999999999999999999999996 8999985 688998
Q ss_pred EeccCCCCCCC-------CCCCCCceEEecCCCCC
Q 037458 169 NWATFSTGDKR-------SDNGPDLSIFVGDLAAD 196 (196)
Q Consensus 169 ~~a~~~~~~~~-------~~~~~~~~ifV~nL~~d 196 (196)
.++........ .......+|||+||+.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~ 197 (457)
T TIGR01622 163 QSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFN 197 (457)
T ss_pred eecchhhhhhhhcccccCCCCCCCCEEEEcCCCCC
Confidence 87654322111 11123579999999964
No 17
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.76 E-value=1.9e-18 Score=121.15 Aligned_cols=83 Identities=24% Similarity=0.482 Sum_probs=77.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEE
Q 037458 89 GGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRL 168 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v 168 (196)
....+|||||||+..++|+.|.++|++||.|..|.+-.|+.+....|||||+|.+.++|+.|++.++|+.++ .+.|++
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLd--dr~ir~ 110 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLD--DRPIRI 110 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCccc--ccceee
Confidence 356789999999999999999999999999999999999999999999999999999999999999999996 699999
Q ss_pred EeccC
Q 037458 169 NWATF 173 (196)
Q Consensus 169 ~~a~~ 173 (196)
+|.-.
T Consensus 111 D~D~G 115 (153)
T KOG0121|consen 111 DWDAG 115 (153)
T ss_pred ecccc
Confidence 98653
No 18
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.76 E-value=4.1e-18 Score=136.23 Aligned_cols=92 Identities=21% Similarity=0.340 Sum_probs=81.8
Q ss_pred CCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCC
Q 037458 84 HQGSGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTD 163 (196)
Q Consensus 84 ~~~~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~ 163 (196)
.++++.+..++|+|+|||+...|-||+.+|++||+|.+|+||.+. ..+||||||+|++.++|++|-++|||..|. |
T Consensus 88 t~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VE--G 163 (376)
T KOG0125|consen 88 TNSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVE--G 163 (376)
T ss_pred CcCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceee--c
Confidence 445667778999999999999999999999999999999999974 678999999999999999999999999995 6
Q ss_pred ccEEEEeccCCCCCCC
Q 037458 164 QPFRLNWATFSTGDKR 179 (196)
Q Consensus 164 ~~i~v~~a~~~~~~~~ 179 (196)
|+|+|+.|......++
T Consensus 164 RkIEVn~ATarV~n~K 179 (376)
T KOG0125|consen 164 RKIEVNNATARVHNKK 179 (376)
T ss_pred eEEEEeccchhhccCC
Confidence 9999999886544433
No 19
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.74 E-value=1.2e-17 Score=107.50 Aligned_cols=70 Identities=39% Similarity=0.614 Sum_probs=65.5
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 95 IWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 95 lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
|||+|||.++++++|+++|+.||.|..+.+..+ .++..++||||+|.+.++|++|++.|+|..+. ++.||
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~--~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKIN--GRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEET--TEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEEC--ccCcC
Confidence 799999999999999999999999999999998 67899999999999999999999999999995 56665
No 20
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.71 E-value=5.5e-17 Score=142.47 Aligned_cols=86 Identities=21% Similarity=0.329 Sum_probs=79.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEE
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLN 169 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~ 169 (196)
...++|||+||+.++++++|+++|+.||.|++|+|.+|+.+++++|||||+|.+.++|.+||+.||+..|+ |+.|+|.
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elg--Gr~LrV~ 279 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLG--GQYLRVG 279 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeC--CeEEEEE
Confidence 34679999999999999999999999999999999999999999999999999999999999999999995 7999999
Q ss_pred eccCCCCC
Q 037458 170 WATFSTGD 177 (196)
Q Consensus 170 ~a~~~~~~ 177 (196)
++...+..
T Consensus 280 kAi~pP~~ 287 (612)
T TIGR01645 280 KCVTPPDA 287 (612)
T ss_pred ecCCCccc
Confidence 99865433
No 21
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.71 E-value=7.1e-17 Score=142.93 Aligned_cols=103 Identities=24% Similarity=0.368 Sum_probs=87.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNW 170 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~ 170 (196)
...+|||+||+.++++++|+++|+.||.|.+|++++|. +|+++|||||+|.+.++|.+|++.|||..+. ++.|+|.+
T Consensus 87 ~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~~--~~~i~v~~ 163 (562)
T TIGR01628 87 GVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLLN--DKEVYVGR 163 (562)
T ss_pred CCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEec--CceEEEec
Confidence 35689999999999999999999999999999999985 6889999999999999999999999999985 68899887
Q ss_pred ccCCCCCCCCCCCCCceEEecCCCCC
Q 037458 171 ATFSTGDKRSDNGPDLSIFVGDLAAD 196 (196)
Q Consensus 171 a~~~~~~~~~~~~~~~~ifV~nL~~d 196 (196)
................+|||+||+++
T Consensus 164 ~~~~~~~~~~~~~~~~~l~V~nl~~~ 189 (562)
T TIGR01628 164 FIKKHEREAAPLKKFTNLYVKNLDPS 189 (562)
T ss_pred cccccccccccccCCCeEEEeCCCCc
Confidence 65443332233455678999999875
No 22
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=8.8e-17 Score=118.45 Aligned_cols=79 Identities=25% Similarity=0.382 Sum_probs=71.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEE
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLN 169 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~ 169 (196)
.-.++||||||+..+++.||+.+|..||.|.+|.|-+++ .|||||||++..+|+.|+..|+|..| +|..|+|+
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~--cG~r~rVE 80 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDI--CGSRIRVE 80 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccc--cCceEEEE
Confidence 447899999999999999999999999999999987765 49999999999999999999999999 57999999
Q ss_pred eccCCC
Q 037458 170 WATFST 175 (196)
Q Consensus 170 ~a~~~~ 175 (196)
+++...
T Consensus 81 ~S~G~~ 86 (195)
T KOG0107|consen 81 LSTGRP 86 (195)
T ss_pred eecCCc
Confidence 987543
No 23
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.69 E-value=2.9e-16 Score=137.33 Aligned_cols=83 Identities=20% Similarity=0.455 Sum_probs=77.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEE
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLN 169 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~ 169 (196)
...++|||+||+..+++++|+++|+.||.|..+.|++++.+|.++|||||+|.+.++|..||..|||..|. ++.|+|.
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~--~~~l~v~ 370 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTG--DNKLHVQ 370 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC--CeEEEEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999995 6889999
Q ss_pred eccCC
Q 037458 170 WATFS 174 (196)
Q Consensus 170 ~a~~~ 174 (196)
++...
T Consensus 371 ~a~~~ 375 (509)
T TIGR01642 371 RACVG 375 (509)
T ss_pred ECccC
Confidence 98653
No 24
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.69 E-value=2.1e-16 Score=124.87 Aligned_cols=76 Identities=18% Similarity=0.242 Sum_probs=70.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEec
Q 037458 92 NKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWA 171 (196)
Q Consensus 92 ~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~a 171 (196)
.++|||+||++.+++++|+++|+.||.|.+|.|++|+. .+|||||+|.+.++|+.||. |+|..|. ++.|+|+++
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~--gr~V~Vt~a 77 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIV--DQSVTITPA 77 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeC--CceEEEEec
Confidence 57999999999999999999999999999999999864 46899999999999999995 9999995 799999998
Q ss_pred cC
Q 037458 172 TF 173 (196)
Q Consensus 172 ~~ 173 (196)
..
T Consensus 78 ~~ 79 (260)
T PLN03120 78 ED 79 (260)
T ss_pred cC
Confidence 74
No 25
>PLN03213 repressor of silencing 3; Provisional
Probab=99.67 E-value=2.1e-16 Score=132.55 Aligned_cols=81 Identities=19% Similarity=0.430 Sum_probs=73.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCH--HHHHHHHHHhCCCCCCCCCcc
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTH--ATAEKVLQSYTSILMPNTDQP 165 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~--~~A~~al~~l~g~~~~~~~~~ 165 (196)
+.....+||||||.+.+++++|+.+|..||.|.+|.|+ +.|| ||||||+|.+. .++.+||..|||..+ .|+.
T Consensus 6 s~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEW--KGR~ 79 (759)
T PLN03213 6 SGGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVW--KGGR 79 (759)
T ss_pred cCCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCee--cCce
Confidence 44567899999999999999999999999999999999 4567 89999999977 689999999999999 5799
Q ss_pred EEEEeccCC
Q 037458 166 FRLNWATFS 174 (196)
Q Consensus 166 i~v~~a~~~ 174 (196)
|+|+.|+..
T Consensus 80 LKVNKAKP~ 88 (759)
T PLN03213 80 LRLEKAKEH 88 (759)
T ss_pred eEEeeccHH
Confidence 999998863
No 26
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.67 E-value=8.6e-16 Score=133.68 Aligned_cols=78 Identities=21% Similarity=0.363 Sum_probs=71.1
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 89 GGENKTIWVGDLHH-WMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 89 ~~~~~~lfVgnLp~-~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
....++|||+||++ .+|+++|+++|+.||.|.+|+|++++ +|||||+|.+.++|.+||..|||..|. |+.|+
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~--g~~l~ 344 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLF--GKPLR 344 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEEC--CceEE
Confidence 45678999999998 69999999999999999999999874 489999999999999999999999995 69999
Q ss_pred EEeccC
Q 037458 168 LNWATF 173 (196)
Q Consensus 168 v~~a~~ 173 (196)
|++++.
T Consensus 345 v~~s~~ 350 (481)
T TIGR01649 345 VCPSKQ 350 (481)
T ss_pred EEEccc
Confidence 999864
No 27
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.67 E-value=5.3e-16 Score=135.00 Aligned_cols=96 Identities=18% Similarity=0.217 Sum_probs=78.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHh--CCCCCCCCCccEEEE
Q 037458 92 NKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSY--TSILMPNTDQPFRLN 169 (196)
Q Consensus 92 ~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l--~g~~~~~~~~~i~v~ 169 (196)
.++|||+||++++++++|+++|+.||.|.+|.+++++ +||||+|.+.++|++|++.| ++..| .|+.|+|.
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k------~~afVef~~~e~A~~Ai~~~~~~~~~l--~g~~l~v~ 73 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGK------RQALVEFEDEESAKACVNFATSVPIYI--RGQPAFFN 73 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCC------CEEEEEeCchHHHHHHHHHhhcCCceE--cCeEEEEE
Confidence 5899999999999999999999999999999998654 79999999999999999875 56667 47999999
Q ss_pred eccCCCCCCCC-------CCCCCceEEecCCCC
Q 037458 170 WATFSTGDKRS-------DNGPDLSIFVGDLAA 195 (196)
Q Consensus 170 ~a~~~~~~~~~-------~~~~~~~ifV~nL~~ 195 (196)
|+......+.. ......+|||+||++
T Consensus 74 ~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~ 106 (481)
T TIGR01649 74 YSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMY 106 (481)
T ss_pred ecCCcccccCCCCcccCCCCCceEEEEEcCCCC
Confidence 99754322221 112334799999985
No 28
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=3.6e-16 Score=123.79 Aligned_cols=84 Identities=25% Similarity=0.390 Sum_probs=76.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 87 SGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 87 ~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
...++-+||||+-|+.+++|..|++.|+.||.|+.|.|++|+.||+++|||||+|.+..+...|.+..+|..|+ ++.|
T Consensus 96 a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Id--grri 173 (335)
T KOG0113|consen 96 AIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKID--GRRI 173 (335)
T ss_pred ccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceec--CcEE
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999997 4777
Q ss_pred EEEecc
Q 037458 167 RLNWAT 172 (196)
Q Consensus 167 ~v~~a~ 172 (196)
-|++-.
T Consensus 174 ~VDvER 179 (335)
T KOG0113|consen 174 LVDVER 179 (335)
T ss_pred EEEecc
Confidence 776544
No 29
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.67 E-value=2.5e-16 Score=111.49 Aligned_cols=85 Identities=26% Similarity=0.422 Sum_probs=79.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
.+...+.|||.++...++|++|.+.|..||+|+++.+..|+.||..+|||+|+|++.+.|.+|+..+||..|. +..|.
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll--~q~v~ 145 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELL--GQNVS 145 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhh--CCcee
Confidence 4567899999999999999999999999999999999999999999999999999999999999999999994 68999
Q ss_pred EEeccCC
Q 037458 168 LNWATFS 174 (196)
Q Consensus 168 v~~a~~~ 174 (196)
|+|+..+
T Consensus 146 VDw~Fv~ 152 (170)
T KOG0130|consen 146 VDWCFVK 152 (170)
T ss_pred EEEEEec
Confidence 9998654
No 30
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=5.4e-17 Score=123.65 Aligned_cols=86 Identities=24% Similarity=0.419 Sum_probs=81.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEE
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLN 169 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~ 169 (196)
...++||||+|...++|..|...|-.||.|++|.+..|-+++++||||||+|...++|.+||..||+.+| .||.|+|+
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL--~GrtirVN 85 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESEL--FGRTIRVN 85 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhh--cceeEEEe
Confidence 5679999999999999999999999999999999999999999999999999999999999999999999 68999999
Q ss_pred eccCCCCC
Q 037458 170 WATFSTGD 177 (196)
Q Consensus 170 ~a~~~~~~ 177 (196)
+|++...+
T Consensus 86 ~AkP~kik 93 (298)
T KOG0111|consen 86 LAKPEKIK 93 (298)
T ss_pred ecCCcccc
Confidence 99976544
No 31
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.66 E-value=2.1e-16 Score=119.33 Aligned_cols=86 Identities=20% Similarity=0.364 Sum_probs=80.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
.-+...+|-|.||.+.++.++|+.+|++||.|.+|.|.+|+.|+.++|||||.|.+..+|+.|+++|+|..|+ |+.|+
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ld--gRelr 86 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLD--GRELR 86 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeec--cceee
Confidence 4466788999999999999999999999999999999999999999999999999999999999999999996 68999
Q ss_pred EEeccCCC
Q 037458 168 LNWATFST 175 (196)
Q Consensus 168 v~~a~~~~ 175 (196)
|.+|+.+.
T Consensus 87 Vq~arygr 94 (256)
T KOG4207|consen 87 VQMARYGR 94 (256)
T ss_pred ehhhhcCC
Confidence 98887653
No 32
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.66 E-value=4.5e-16 Score=100.51 Aligned_cols=70 Identities=26% Similarity=0.524 Sum_probs=63.1
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 95 IWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 95 lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
|||+|||+++++++|+++|+.||.|..+.+..++. +..+|+|||+|.+.++|.+|+..+++..+. |+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~--g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEID--GRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEET--TEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEEC--CEEcC
Confidence 79999999999999999999999999999999987 899999999999999999999999988885 56654
No 33
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=1.1e-16 Score=132.01 Aligned_cols=85 Identities=27% Similarity=0.463 Sum_probs=78.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCC-CCCCCCccEEEE
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSI-LMPNTDQPFRLN 169 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~-~~~~~~~~i~v~ 169 (196)
+.++||||.|+..+||++++++|++||.|++|.|++|. .+.+||||||.|.+++.|..||+.|||. .+.++..+|.|.
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 47899999999999999999999999999999999996 5999999999999999999999999995 677888999999
Q ss_pred eccCCCC
Q 037458 170 WATFSTG 176 (196)
Q Consensus 170 ~a~~~~~ 176 (196)
||+..+.
T Consensus 202 FADtqkd 208 (510)
T KOG0144|consen 202 FADTQKD 208 (510)
T ss_pred ecccCCC
Confidence 9987643
No 34
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.65 E-value=1.8e-16 Score=125.16 Aligned_cols=86 Identities=19% Similarity=0.390 Sum_probs=77.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEecc
Q 037458 93 KTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWAT 172 (196)
Q Consensus 93 ~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~a~ 172 (196)
.+|||||||..+++.+|+.+|++||+|.+|.|+++ ||||..++...++.||+.|+|..|+ |..|+|+-++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLh--g~nInVeaSk 72 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLH--GVNINVEASK 72 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceec--ceEEEEEecc
Confidence 47999999999999999999999999999999976 9999999999999999999999996 6889999887
Q ss_pred CCCCCCCCCCCCCceEEecCCCC
Q 037458 173 FSTGDKRSDNGPDLSIFVGDLAA 195 (196)
Q Consensus 173 ~~~~~~~~~~~~~~~ifV~nL~~ 195 (196)
.+ .....+|+||||.+
T Consensus 73 sK-------sk~stkl~vgNis~ 88 (346)
T KOG0109|consen 73 SK-------SKASTKLHVGNISP 88 (346)
T ss_pred cc-------CCCccccccCCCCc
Confidence 65 23456899999986
No 35
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.64 E-value=1.1e-15 Score=133.89 Aligned_cols=107 Identities=15% Similarity=0.222 Sum_probs=82.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCC-eeEEEEe-ecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGE-IASIKVI-RNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~-i~~v~i~-~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
...++|||+||+.++++++|+++|++++. ++++.+. .+..+++++|||||+|.+.++|.+|++.|+...+...++.|+
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~ 215 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIA 215 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEE
Confidence 45789999999999999999999999874 4444333 233457889999999999999999999887644433579999
Q ss_pred EEeccCCCCCCCCCCCCCceEEecCCCCC
Q 037458 168 LNWATFSTGDKRSDNGPDLSIFVGDLAAD 196 (196)
Q Consensus 168 v~~a~~~~~~~~~~~~~~~~ifV~nL~~d 196 (196)
|+|+..............++|||+||+++
T Consensus 216 VdwA~p~~~~d~~~~~~~k~LfVgNL~~~ 244 (578)
T TIGR01648 216 VDWAEPEEEVDEDVMAKVKILYVRNLMTT 244 (578)
T ss_pred EEeecccccccccccccccEEEEeCCCCC
Confidence 99998654333333345678999999974
No 36
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=1.2e-15 Score=119.55 Aligned_cols=84 Identities=21% Similarity=0.474 Sum_probs=76.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 87 SGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 87 ~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
.++.++++||||||...++|++|++.|+.||.|.+|++.+++ ||+||.|++.|+|.+||..+|+.+|. |..|
T Consensus 159 Qssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q------GYaFVrF~tkEaAahAIv~mNntei~--G~~V 230 (321)
T KOG0148|consen 159 QSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ------GYAFVRFETKEAAAHAIVQMNNTEIG--GQLV 230 (321)
T ss_pred cCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc------ceEEEEecchhhHHHHHHHhcCceeC--ceEE
Confidence 456789999999999999999999999999999999999986 89999999999999999999999995 6999
Q ss_pred EEEeccCCCCCC
Q 037458 167 RLNWATFSTGDK 178 (196)
Q Consensus 167 ~v~~a~~~~~~~ 178 (196)
|+.|.+......
T Consensus 231 kCsWGKe~~~~~ 242 (321)
T KOG0148|consen 231 RCSWGKEGDDGI 242 (321)
T ss_pred EEeccccCCCCC
Confidence 999998764433
No 37
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.64 E-value=1.9e-17 Score=122.67 Aligned_cols=82 Identities=23% Similarity=0.433 Sum_probs=76.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEE
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLN 169 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~ 169 (196)
.+..-||||||+++.||.+|.-+|+.||+|++|.+++|+.||+++||||+.|++..+...|+..|||..|. ||.|||+
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~--gRtirVD 110 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKIL--GRTIRVD 110 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceec--ceeEEee
Confidence 46778999999999999999999999999999999999999999999999999999999999999999994 7999998
Q ss_pred eccC
Q 037458 170 WATF 173 (196)
Q Consensus 170 ~a~~ 173 (196)
....
T Consensus 111 Hv~~ 114 (219)
T KOG0126|consen 111 HVSN 114 (219)
T ss_pred eccc
Confidence 7654
No 38
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.64 E-value=5.4e-16 Score=131.41 Aligned_cols=82 Identities=26% Similarity=0.515 Sum_probs=78.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEecc
Q 037458 93 KTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWAT 172 (196)
Q Consensus 93 ~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~a~ 172 (196)
+.||||||+++++|++|.++|+..|.|.+++++.|+.||+.+||||++|.+.++|++|++.|||.++. ||+|+|+|+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~--gr~l~v~~~~ 96 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFN--GRKLRVNYAS 96 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccC--CceEEeeccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999995 7999999997
Q ss_pred CCCC
Q 037458 173 FSTG 176 (196)
Q Consensus 173 ~~~~ 176 (196)
....
T Consensus 97 ~~~~ 100 (435)
T KOG0108|consen 97 NRKN 100 (435)
T ss_pred ccch
Confidence 6544
No 39
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.63 E-value=1.5e-15 Score=131.18 Aligned_cols=80 Identities=26% Similarity=0.561 Sum_probs=76.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEec
Q 037458 92 NKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWA 171 (196)
Q Consensus 92 ~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~a 171 (196)
.++|||+||+.++++++|+++|+.||.|..|.+++++.+|+++|||||+|.+.++|.+|+..|||..|. ++.|+|.|+
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~--g~~i~v~~a 263 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELA--GRPIKVGYA 263 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEEC--CEEEEEEEc
Confidence 689999999999999999999999999999999999999999999999999999999999999999884 699999997
Q ss_pred cC
Q 037458 172 TF 173 (196)
Q Consensus 172 ~~ 173 (196)
..
T Consensus 264 ~~ 265 (457)
T TIGR01622 264 QD 265 (457)
T ss_pred cC
Confidence 63
No 40
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=2.1e-15 Score=112.22 Aligned_cols=102 Identities=20% Similarity=0.301 Sum_probs=83.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEE
Q 037458 89 GGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRL 168 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v 168 (196)
....++|||||||.++.+.+|.++|.+||.|.+|.+... ....+||||+|++..+|+.||..-+|..++ +..|+|
T Consensus 3 gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdyd--g~rLRV 77 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYD--GCRLRV 77 (241)
T ss_pred CcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccC--cceEEE
Confidence 356789999999999999999999999999999988543 234579999999999999999999999996 589999
Q ss_pred EeccCCCCCC--C-------------------CCCCCCceEEecCCCC
Q 037458 169 NWATFSTGDK--R-------------------SDNGPDLSIFVGDLAA 195 (196)
Q Consensus 169 ~~a~~~~~~~--~-------------------~~~~~~~~ifV~nL~~ 195 (196)
+|+....... + -....+++|.|.+||+
T Consensus 78 Efprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~ 125 (241)
T KOG0105|consen 78 EFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPP 125 (241)
T ss_pred EeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCC
Confidence 9987642110 0 0123677999999987
No 41
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.60 E-value=1.1e-14 Score=115.78 Aligned_cols=79 Identities=30% Similarity=0.569 Sum_probs=75.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEec
Q 037458 92 NKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWA 171 (196)
Q Consensus 92 ~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~a 171 (196)
.++|||+||+.++++++|+++|..||.|..+.+..|+.++.++|||||+|.+.++|..|+..++|..|. ++.|+|.++
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~--~~~~~v~~~ 192 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELE--GRPLRVQKA 192 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeEC--CceeEeecc
Confidence 699999999999999999999999999999999999999999999999999999999999999999995 699999996
Q ss_pred c
Q 037458 172 T 172 (196)
Q Consensus 172 ~ 172 (196)
.
T Consensus 193 ~ 193 (306)
T COG0724 193 Q 193 (306)
T ss_pred c
Confidence 4
No 42
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.60 E-value=7e-15 Score=114.63 Aligned_cols=76 Identities=18% Similarity=0.170 Sum_probs=67.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNW 170 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~ 170 (196)
..++|||+||++.+|+++|+++|+.||+|.+|+|++|. ..++||||+|.+.++|+.|+ .|+|..|. ++.|.|..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~--d~~I~It~ 77 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIV--DQRVCITR 77 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeC--CceEEEEe
Confidence 46899999999999999999999999999999999984 44589999999999999999 59999995 57788865
Q ss_pred cc
Q 037458 171 AT 172 (196)
Q Consensus 171 a~ 172 (196)
..
T Consensus 78 ~~ 79 (243)
T PLN03121 78 WG 79 (243)
T ss_pred Cc
Confidence 43
No 43
>smart00362 RRM_2 RNA recognition motif.
Probab=99.59 E-value=1.1e-14 Score=93.02 Aligned_cols=71 Identities=32% Similarity=0.590 Sum_probs=65.0
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEE
Q 037458 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRL 168 (196)
Q Consensus 94 ~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v 168 (196)
+|||+||+.++++++|+++|+.||.|..+.+..++ +.++|+|||+|.+.++|++|++.+++..+. ++.|+|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~--~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLG--GRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEEC--CEEEee
Confidence 58999999999999999999999999999999886 778899999999999999999999998885 567665
No 44
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.57 E-value=4.9e-15 Score=120.81 Aligned_cols=104 Identities=28% Similarity=0.457 Sum_probs=85.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEE
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLN 169 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~ 169 (196)
.+.++||||+|+|+++++.|++.|+.||+|.+|.+++|+.+++++||+||+|.+.+...++|.. .-+.|+ ++.|.+.
T Consensus 4 ~~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~d--gr~ve~k 80 (311)
T KOG4205|consen 4 GESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLD--GRSVEPK 80 (311)
T ss_pred cCCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccC--Cccccce
Confidence 3789999999999999999999999999999999999999999999999999999998888753 445564 5778777
Q ss_pred eccCCCCCCC-CCCCCCceEEecCCCCC
Q 037458 170 WATFSTGDKR-SDNGPDLSIFVGDLAAD 196 (196)
Q Consensus 170 ~a~~~~~~~~-~~~~~~~~ifV~nL~~d 196 (196)
.|.+.....+ ......++||||+|++|
T Consensus 81 ~av~r~~~~~~~~~~~tkkiFvGG~~~~ 108 (311)
T KOG4205|consen 81 RAVSREDQTKVGRHLRTKKIFVGGLPPD 108 (311)
T ss_pred eccCcccccccccccceeEEEecCcCCC
Confidence 7764432222 22336779999999986
No 45
>smart00360 RRM RNA recognition motif.
Probab=99.57 E-value=1.8e-14 Score=91.55 Aligned_cols=70 Identities=34% Similarity=0.613 Sum_probs=64.8
Q ss_pred EcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEE
Q 037458 97 VGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRL 168 (196)
Q Consensus 97 VgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v 168 (196)
|+||+.++++++|+++|+.||.|..+.+..++.++.++|||||+|.+.++|.+|++.+++..+. ++.|+|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~--~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELD--GRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeC--CcEEEe
Confidence 6899999999999999999999999999999888999999999999999999999999998885 577766
No 46
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=1.8e-15 Score=122.96 Aligned_cols=104 Identities=18% Similarity=0.320 Sum_probs=88.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNW 170 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~ 170 (196)
--++||||.|.+.+.|+.||..|..||.|++|.+.+|+.|+++||||||+|+-.+.|..|++.|||..++ ||.|+|..
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlG--GRNiKVgr 189 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLG--GRNIKVGR 189 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhcccccc--CccccccC
Confidence 4689999999999999999999999999999999999999999999999999999999999999999995 69999985
Q ss_pred ccCCCCCCC------CCCCCCceEEecCCCCC
Q 037458 171 ATFSTGDKR------SDNGPDLSIFVGDLAAD 196 (196)
Q Consensus 171 a~~~~~~~~------~~~~~~~~ifV~nL~~d 196 (196)
-..-..... .+...-++|||..+.+|
T Consensus 190 PsNmpQAQpiID~vqeeAk~fnRiYVaSvHpD 221 (544)
T KOG0124|consen 190 PSNMPQAQPIIDMVQEEAKKFNRIYVASVHPD 221 (544)
T ss_pred CCCCcccchHHHHHHHHHHhhheEEeeecCCC
Confidence 443221111 22345678999887765
No 47
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=2.3e-14 Score=121.59 Aligned_cols=80 Identities=24% Similarity=0.424 Sum_probs=73.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNW 170 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~ 170 (196)
...+|.|+|||+.|.+.+|+.+|+.||.|.+|.|.+.+. |+.+|||||.|....+|..|++.+|+..|+ ||.|-|+|
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~--gR~VAVDW 192 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKID--GRPVAVDW 192 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceec--CceeEEee
Confidence 478999999999999999999999999999999998765 555599999999999999999999999995 69999999
Q ss_pred ccC
Q 037458 171 ATF 173 (196)
Q Consensus 171 a~~ 173 (196)
|-.
T Consensus 193 AV~ 195 (678)
T KOG0127|consen 193 AVD 195 (678)
T ss_pred ecc
Confidence 854
No 48
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=1.4e-14 Score=120.22 Aligned_cols=107 Identities=13% Similarity=0.224 Sum_probs=88.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCC-eeEEEEeecCC-CCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 89 GGENKTIWVGDLHHWMDENYLHSCFASTGE-IASIKVIRNKQ-TGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~~te~~l~~~F~~~G~-i~~v~i~~d~~-tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
+..+++|||||||.++++++|++.|++.++ |++|.|..+.. ..++||||||+|+++.+|..|.+.|-...|..++..+
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~ 240 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAI 240 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcc
Confidence 457899999999999999999999999985 67777776543 4688999999999999999999888776666678999
Q ss_pred EEEeccCCCCCCCCCCCCCceEEecCCCC
Q 037458 167 RLNWATFSTGDKRSDNGPDLSIFVGDLAA 195 (196)
Q Consensus 167 ~v~~a~~~~~~~~~~~~~~~~ifV~nL~~ 195 (196)
.|+||.....-........+-|||.||+.
T Consensus 241 tVdWAep~~e~ded~ms~VKvLYVRNL~~ 269 (506)
T KOG0117|consen 241 TVDWAEPEEEPDEDTMSKVKVLYVRNLME 269 (506)
T ss_pred eeeccCcccCCChhhhhheeeeeeeccch
Confidence 99999976554444456677899999975
No 49
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=2.9e-14 Score=111.33 Aligned_cols=86 Identities=27% Similarity=0.400 Sum_probs=79.4
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCcc
Q 037458 86 GSGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQP 165 (196)
Q Consensus 86 ~~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~ 165 (196)
++.....+.|||-||..+++|..|+.+|..||.|.+|+|++|..|.+.|||+||++.+.++|..||..|||..+. +|.
T Consensus 272 p~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg--~rv 349 (360)
T KOG0145|consen 272 PGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLG--DRV 349 (360)
T ss_pred CCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCcccc--ceE
Confidence 344566899999999999999999999999999999999999999999999999999999999999999999995 699
Q ss_pred EEEEeccC
Q 037458 166 FRLNWATF 173 (196)
Q Consensus 166 i~v~~a~~ 173 (196)
+.|.|...
T Consensus 350 LQVsFKtn 357 (360)
T KOG0145|consen 350 LQVSFKTN 357 (360)
T ss_pred EEEEEecC
Confidence 99998653
No 50
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.55 E-value=3.3e-14 Score=124.41 Aligned_cols=76 Identities=16% Similarity=0.321 Sum_probs=61.6
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhc------------CCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHh
Q 037458 87 SGGGENKTIWVGDLHHWMDENYLHSCFAST------------GEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSY 154 (196)
Q Consensus 87 ~~~~~~~~lfVgnLp~~~te~~l~~~F~~~------------G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l 154 (196)
......++||||||+.++|+++|+++|+.| +.|..+.+ ++.+|||||+|.+.++|..|| .|
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al-~l 242 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAM-AL 242 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhh-cC
Confidence 455678999999999999999999999975 23344443 345699999999999999999 59
Q ss_pred CCCCCCCCCccEEEEec
Q 037458 155 TSILMPNTDQPFRLNWA 171 (196)
Q Consensus 155 ~g~~~~~~~~~i~v~~a 171 (196)
+|..|. |+.|+|...
T Consensus 243 ~g~~~~--g~~l~v~r~ 257 (509)
T TIGR01642 243 DSIIYS--NVFLKIRRP 257 (509)
T ss_pred CCeEee--CceeEecCc
Confidence 999885 588888654
No 51
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.52 E-value=1.4e-13 Score=88.20 Aligned_cols=74 Identities=32% Similarity=0.610 Sum_probs=67.0
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q 037458 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNW 170 (196)
Q Consensus 94 ~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~ 170 (196)
+|+|+||+.++++++|+++|+.||.|..+.+..++.+ ..+|+|||+|.+.++|..|++.+++..+. ++.+.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~--~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELG--GRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeEC--CeEEEEeC
Confidence 5899999999999999999999999999999988654 67899999999999999999999999885 58887764
No 52
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=1e-13 Score=93.99 Aligned_cols=78 Identities=15% Similarity=0.257 Sum_probs=69.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEE
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLN 169 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~ 169 (196)
+.++.|||.|||+++|.+++.++|.+||.|..|+|-..+. .+|-|||.|++..+|.+|++.|+|..+. ++.+.|-
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~--~ryl~vl 90 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVD--NRYLVVL 90 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccC--CceEEEE
Confidence 5678999999999999999999999999999999976654 5799999999999999999999999995 5888887
Q ss_pred ecc
Q 037458 170 WAT 172 (196)
Q Consensus 170 ~a~ 172 (196)
|-.
T Consensus 91 yyq 93 (124)
T KOG0114|consen 91 YYQ 93 (124)
T ss_pred ecC
Confidence 644
No 53
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=6.2e-14 Score=117.66 Aligned_cols=86 Identities=29% Similarity=0.546 Sum_probs=78.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEecc
Q 037458 93 KTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWAT 172 (196)
Q Consensus 93 ~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~a~ 172 (196)
..|||| .++||..|.++|+.+|.|+++++++|- | +.|||||.|.+.++|++||..||...+. |+.|||.|+.
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~--~~~~rim~s~ 73 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLK--GKPIRIMWSQ 73 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccC--CcEEEeehhc
Confidence 468999 899999999999999999999999998 6 9999999999999999999999999995 7999999988
Q ss_pred CCCCCCCCCCCCCceEEecCCCCC
Q 037458 173 FSTGDKRSDNGPDLSIFVGDLAAD 196 (196)
Q Consensus 173 ~~~~~~~~~~~~~~~ifV~nL~~d 196 (196)
+.... |||.||++|
T Consensus 74 rd~~~----------~~i~nl~~~ 87 (369)
T KOG0123|consen 74 RDPSL----------VFIKNLDES 87 (369)
T ss_pred cCCce----------eeecCCCcc
Confidence 65322 999999975
No 54
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=1.8e-13 Score=116.22 Aligned_cols=102 Identities=19% Similarity=0.298 Sum_probs=88.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEec
Q 037458 92 NKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWA 171 (196)
Q Consensus 92 ~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~a 171 (196)
..||||++|++.++.+.|.++|+.+|.|..|.++.++.++.++||+||+|.-.+++.+|++.+++..+. |+.|+|+.|
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~--Gr~l~v~~A 82 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFE--GRILNVDPA 82 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCccc--ceecccccc
Confidence 489999999999999999999999999999999999999999999999999999999999999999995 699999988
Q ss_pred cCCCCCCC-------------------CC--CCCCceEEecCCCC
Q 037458 172 TFSTGDKR-------------------SD--NGPDLSIFVGDLAA 195 (196)
Q Consensus 172 ~~~~~~~~-------------------~~--~~~~~~ifV~nL~~ 195 (196)
+....... .. .....+|.|.||||
T Consensus 83 ~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf 127 (678)
T KOG0127|consen 83 KKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPF 127 (678)
T ss_pred cccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCc
Confidence 75432220 01 23377899999998
No 55
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=1.1e-13 Score=108.46 Aligned_cols=86 Identities=22% Similarity=0.322 Sum_probs=79.3
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 87 SGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 87 ~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
.+..+.+.|||-.||-+..+.||..+|-.||.|++.++..|+.|+.+|+|+||.|++..+|..||..|||..|+ -+++
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIG--MKRL 357 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIG--MKRL 357 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhh--hhhh
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999995 4778
Q ss_pred EEEeccCC
Q 037458 167 RLNWATFS 174 (196)
Q Consensus 167 ~v~~a~~~ 174 (196)
||.+.+.+
T Consensus 358 KVQLKRPk 365 (371)
T KOG0146|consen 358 KVQLKRPK 365 (371)
T ss_pred hhhhcCcc
Confidence 88775544
No 56
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=1.7e-13 Score=107.49 Aligned_cols=86 Identities=27% Similarity=0.515 Sum_probs=77.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCC-CCCCCCccEE
Q 037458 89 GGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSI-LMPNTDQPFR 167 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~-~~~~~~~~i~ 167 (196)
..++++||||-|...-.|||++++|..||.|.+|.+.+.. .|.+|||+||.|.+..+|..||..|+|. .+.+-...+.
T Consensus 16 g~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLV 94 (371)
T KOG0146|consen 16 GGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLV 94 (371)
T ss_pred CccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceE
Confidence 3488999999999999999999999999999999999986 4999999999999999999999999995 4555667789
Q ss_pred EEeccCCC
Q 037458 168 LNWATFST 175 (196)
Q Consensus 168 v~~a~~~~ 175 (196)
|.|++.+.
T Consensus 95 VK~ADTdk 102 (371)
T KOG0146|consen 95 VKFADTDK 102 (371)
T ss_pred EEeccchH
Confidence 99998653
No 57
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.44 E-value=2.2e-13 Score=101.24 Aligned_cols=89 Identities=21% Similarity=0.440 Sum_probs=78.5
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeE-EEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCcc
Q 037458 87 SGGGENKTIWVGDLHHWMDENYLHSCFASTGEIAS-IKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQP 165 (196)
Q Consensus 87 ~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~-v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~ 165 (196)
.......+||||||.+.++|..|.+.|+.||.+.+ -++++|..||.++|||||.|++.+.+.+|++.+||..+. .+.
T Consensus 91 ~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~--nr~ 168 (203)
T KOG0131|consen 91 KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLC--NRP 168 (203)
T ss_pred ccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhc--CCc
Confidence 34455689999999999999999999999998754 578999999999999999999999999999999999995 599
Q ss_pred EEEEeccCCCCC
Q 037458 166 FRLNWATFSTGD 177 (196)
Q Consensus 166 i~v~~a~~~~~~ 177 (196)
|+|+|++.+..+
T Consensus 169 itv~ya~k~~~k 180 (203)
T KOG0131|consen 169 ITVSYAFKKDTK 180 (203)
T ss_pred eEEEEEEecCCC
Confidence 999999765433
No 58
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.42 E-value=7.7e-13 Score=81.73 Aligned_cols=56 Identities=29% Similarity=0.602 Sum_probs=50.1
Q ss_pred HHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEec
Q 037458 109 LHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWA 171 (196)
Q Consensus 109 l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~a 171 (196)
|+++|++||.|.++.+..++ +++|||+|.+.++|.+|++.|||..+. |+.|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~--g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFN--GRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEET--TEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEEC--CcEEEEEEC
Confidence 68899999999999997664 589999999999999999999999994 699999996
No 59
>smart00361 RRM_1 RNA recognition motif.
Probab=99.42 E-value=9.9e-13 Score=85.06 Aligned_cols=61 Identities=11% Similarity=0.245 Sum_probs=53.9
Q ss_pred HHHHHHHHH----hcCCeeEEE-EeecCCC--CCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEE
Q 037458 106 ENYLHSCFA----STGEIASIK-VIRNKQT--GLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRL 168 (196)
Q Consensus 106 e~~l~~~F~----~~G~i~~v~-i~~d~~t--g~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v 168 (196)
+++|+++|+ .||.|.+|. ++.++.+ +.++|||||+|.+.++|.+|++.|||..+. |+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~--gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFD--GRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC--CEEEEe
Confidence 567888888 999999996 7777767 899999999999999999999999999995 577775
No 60
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.41 E-value=2.6e-13 Score=115.27 Aligned_cols=81 Identities=25% Similarity=0.539 Sum_probs=74.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNW 170 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~ 170 (196)
+..+||||||.++++++.|+.+|+.||+|..|.+.+|..||.++|||||+|.+.++|.+|++.|||.+| -|+.|+|..
T Consensus 277 p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfel--AGr~ikV~~ 354 (549)
T KOG0147|consen 277 PMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFEL--AGRLIKVSV 354 (549)
T ss_pred chhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhcccee--cCceEEEEE
Confidence 344499999999999999999999999999999999999999999999999999999999999999877 579999876
Q ss_pred ccC
Q 037458 171 ATF 173 (196)
Q Consensus 171 a~~ 173 (196)
...
T Consensus 355 v~~ 357 (549)
T KOG0147|consen 355 VTE 357 (549)
T ss_pred eee
Confidence 553
No 61
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=5.1e-13 Score=108.32 Aligned_cols=82 Identities=24% Similarity=0.433 Sum_probs=77.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEE
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLN 169 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~ 169 (196)
.+...|||-.|.+-+++++|.-+|+.||.|.+|.|++|+.||.+..||||+|++.+++++|.-.|++..|+ .+.|.|+
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLID--DrRIHVD 314 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLID--DRRIHVD 314 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeec--cceEEee
Confidence 46788999999999999999999999999999999999999999999999999999999999999999996 6999999
Q ss_pred eccC
Q 037458 170 WATF 173 (196)
Q Consensus 170 ~a~~ 173 (196)
|+.+
T Consensus 315 FSQS 318 (479)
T KOG0415|consen 315 FSQS 318 (479)
T ss_pred hhhh
Confidence 8754
No 62
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.37 E-value=1.1e-12 Score=115.23 Aligned_cols=76 Identities=30% Similarity=0.577 Sum_probs=70.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEec
Q 037458 92 NKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWA 171 (196)
Q Consensus 92 ~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~a 171 (196)
.+|||||.|+.+++|.+|+.+|+.||+|.+|.++..+ |||||....+.+|++|+.+|+...+. ++.|+|.||
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R------~cAfI~M~~RqdA~kalqkl~n~kv~--~k~Iki~Wa 492 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR------GCAFIKMVRRQDAEKALQKLSNVKVA--DKTIKIAWA 492 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC------ceeEEEEeehhHHHHHHHHHhccccc--ceeeEEeee
Confidence 4899999999999999999999999999999998765 89999999999999999999988884 699999999
Q ss_pred cCCC
Q 037458 172 TFST 175 (196)
Q Consensus 172 ~~~~ 175 (196)
....
T Consensus 493 ~g~G 496 (894)
T KOG0132|consen 493 VGKG 496 (894)
T ss_pred ccCC
Confidence 7653
No 63
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.33 E-value=7.6e-12 Score=104.03 Aligned_cols=82 Identities=12% Similarity=0.234 Sum_probs=72.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHH-hcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 89 GGENKTIWVGDLHHWMDENYLHSCFA-STGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~~te~~l~~~F~-~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
....+.+||.|||+++.+.+|+++|. +.|+|..|.+..|. +|+++|||.|+|.++|.+++|++.||.+++. +|.|+
T Consensus 41 ~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~--GR~l~ 117 (608)
T KOG4212|consen 41 AARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVN--GRELV 117 (608)
T ss_pred ccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhcccc--CceEE
Confidence 34567799999999999999999995 57899999999995 6999999999999999999999999999995 68888
Q ss_pred EEeccC
Q 037458 168 LNWATF 173 (196)
Q Consensus 168 v~~a~~ 173 (196)
|.-...
T Consensus 118 vKEd~d 123 (608)
T KOG4212|consen 118 VKEDHD 123 (608)
T ss_pred EeccCc
Confidence 875543
No 64
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.33 E-value=3.7e-11 Score=92.16 Aligned_cols=92 Identities=16% Similarity=0.207 Sum_probs=75.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEee-cCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCC-CCCcc
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIR-NKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMP-NTDQP 165 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~-d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~-~~~~~ 165 (196)
+.+..+||||.+||.++...+|+.+|..|-..+.+.+.. ++...-.+-+|||+|.+..+|.+|++.|||..++ .++..
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 456789999999999999999999999997777666643 3322334579999999999999999999999887 34788
Q ss_pred EEEEeccCCCCCCC
Q 037458 166 FRLNWATFSTGDKR 179 (196)
Q Consensus 166 i~v~~a~~~~~~~~ 179 (196)
++|++|+...+.++
T Consensus 110 LhiElAKSNtK~kr 123 (284)
T KOG1457|consen 110 LHIELAKSNTKRKR 123 (284)
T ss_pred eEeeehhcCccccc
Confidence 99999998765544
No 65
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.31 E-value=1.1e-11 Score=95.18 Aligned_cols=81 Identities=22% Similarity=0.411 Sum_probs=72.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHH----HHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCcc
Q 037458 90 GENKTIWVGDLHHWMDENYLHS----CFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQP 165 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~----~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~ 165 (196)
....||||.||.+.+..++|++ +|+.||.|.+|...+ |.+.+|-|||.|.+.+.|..|++.|+|..+ .|+.
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpF--ygK~ 81 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPF--YGKP 81 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcc--cCch
Confidence 3455999999999999999888 999999999988764 578899999999999999999999999999 5799
Q ss_pred EEEEeccCCC
Q 037458 166 FRLNWATFST 175 (196)
Q Consensus 166 i~v~~a~~~~ 175 (196)
++|.||+.+.
T Consensus 82 mriqyA~s~s 91 (221)
T KOG4206|consen 82 MRIQYAKSDS 91 (221)
T ss_pred hheecccCcc
Confidence 9999998753
No 66
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=8.4e-12 Score=104.86 Aligned_cols=97 Identities=22% Similarity=0.395 Sum_probs=78.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEecc
Q 037458 93 KTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWAT 172 (196)
Q Consensus 93 ~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~a~ 172 (196)
..|||.||+++++.++|.++|+.||.|++|++.+|.. | ++|| ||+|++.++|.+|++.+||..+. ++.|-|....
T Consensus 77 ~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~--~kki~vg~~~ 151 (369)
T KOG0123|consen 77 SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLN--GKKIYVGLFE 151 (369)
T ss_pred ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccC--CCeeEEeecc
Confidence 3399999999999999999999999999999999964 5 9999 99999999999999999999995 5778777665
Q ss_pred CCCCCCC---CCCCCCceEEecCCC
Q 037458 173 FSTGDKR---SDNGPDLSIFVGDLA 194 (196)
Q Consensus 173 ~~~~~~~---~~~~~~~~ifV~nL~ 194 (196)
+...+.+ .......+++|.++.
T Consensus 152 ~~~er~~~~~~~~~~~t~v~vk~~~ 176 (369)
T KOG0123|consen 152 RKEEREAPLGEYKKRFTNVYVKNLE 176 (369)
T ss_pred chhhhcccccchhhhhhhhheeccc
Confidence 4322111 123445577777765
No 67
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=1.1e-11 Score=108.10 Aligned_cols=102 Identities=24% Similarity=0.427 Sum_probs=81.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCC---CcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEE
Q 037458 93 KTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTG---LSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLN 169 (196)
Q Consensus 93 ~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg---~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~ 169 (196)
++|||.||.+++|.++|...|...|.|+++.|...+... .+.|||||+|.+.++|.+|++.|+|+.|+ |+.|.|.
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvld--GH~l~lk 593 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLD--GHKLELK 593 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceec--CceEEEE
Confidence 349999999999999999999999999999887765321 35699999999999999999999999996 5888887
Q ss_pred eccCC----CCCCCCCCCCCceEEecCCCCC
Q 037458 170 WATFS----TGDKRSDNGPDLSIFVGDLAAD 196 (196)
Q Consensus 170 ~a~~~----~~~~~~~~~~~~~ifV~nL~~d 196 (196)
++... .+++........+|.|.|||+.
T Consensus 594 ~S~~k~~~~~gK~~~~kk~~tKIlVRNipFe 624 (725)
T KOG0110|consen 594 ISENKPASTVGKKKSKKKKGTKILVRNIPFE 624 (725)
T ss_pred eccCccccccccccccccccceeeeeccchH
Confidence 77621 1122222233569999999973
No 68
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.30 E-value=9.3e-12 Score=106.49 Aligned_cols=88 Identities=23% Similarity=0.361 Sum_probs=79.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEE
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLN 169 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~ 169 (196)
.-.+.|||.+|...+...+|+.+|++||+|+-.+|+.+..+-..++|+||++.+.++|.+||..|+.++|+ |+.|.|+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELH--GrmISVE 480 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELH--GRMISVE 480 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhc--ceeeeee
Confidence 34688999999999999999999999999999999998877788999999999999999999999999996 6999999
Q ss_pred eccCCCCCCC
Q 037458 170 WATFSTGDKR 179 (196)
Q Consensus 170 ~a~~~~~~~~ 179 (196)
.++..+..++
T Consensus 481 kaKNEp~Gkk 490 (940)
T KOG4661|consen 481 KAKNEPGGKK 490 (940)
T ss_pred ecccCccccc
Confidence 9987654433
No 69
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.28 E-value=1.6e-11 Score=93.05 Aligned_cols=85 Identities=22% Similarity=0.358 Sum_probs=74.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhc-CCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFAST-GEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~-G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
......-+||+.++..+.+.+|..+|..| |.+..+++.|++.||.++|||||+|++.+.|+-|.+.||+..+ .++.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl--~e~lL 122 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLL--MEHLL 122 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhh--hhhee
Confidence 34556779999999999999999999999 6778888889999999999999999999999999999999988 46777
Q ss_pred EEEeccCC
Q 037458 167 RLNWATFS 174 (196)
Q Consensus 167 ~v~~a~~~ 174 (196)
.+.+-..+
T Consensus 123 ~c~vmppe 130 (214)
T KOG4208|consen 123 ECHVMPPE 130 (214)
T ss_pred eeEEeCch
Confidence 77765544
No 70
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=1.2e-11 Score=100.94 Aligned_cols=85 Identities=21% Similarity=0.332 Sum_probs=77.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
+...-.+|||..+..+.+|++|+.+|+.||+|++|.+-++..++.+|||+||+|.+..+...||..||-..++ |..+|
T Consensus 206 eAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLG--GQyLR 283 (544)
T KOG0124|consen 206 EAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLG--GQYLR 283 (544)
T ss_pred HHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcc--cceEe
Confidence 4456789999999999999999999999999999999999999999999999999999999999999998884 68899
Q ss_pred EEeccCC
Q 037458 168 LNWATFS 174 (196)
Q Consensus 168 v~~a~~~ 174 (196)
|..+-..
T Consensus 284 VGk~vTP 290 (544)
T KOG0124|consen 284 VGKCVTP 290 (544)
T ss_pred cccccCC
Confidence 9876543
No 71
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.25 E-value=3.1e-11 Score=97.79 Aligned_cols=79 Identities=28% Similarity=0.441 Sum_probs=67.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
++...++||||+|...++|.+|+++|..||+|.++.+...+ ++|||+|.++++|+.|.+.+-...+- .|++|+
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI-~G~Rl~ 296 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVI-NGFRLK 296 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeee-cceEEE
Confidence 45567899999999999999999999999999999998765 69999999999999987764443332 479999
Q ss_pred EEeccC
Q 037458 168 LNWATF 173 (196)
Q Consensus 168 v~~a~~ 173 (196)
|.|++.
T Consensus 297 i~Wg~~ 302 (377)
T KOG0153|consen 297 IKWGRP 302 (377)
T ss_pred EEeCCC
Confidence 999987
No 72
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.21 E-value=2e-11 Score=96.90 Aligned_cols=75 Identities=15% Similarity=0.310 Sum_probs=68.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEE
Q 037458 89 GGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRL 168 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v 168 (196)
+...++|+||||.+.++..+|++.|++||.|.+|+|++| |+||.|+-.++|..|++.|++.++. |++++|
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~--gk~m~v 144 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQ--GKRMHV 144 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccc--cceeee
Confidence 456789999999999999999999999999999999876 9999999999999999999999996 588888
Q ss_pred EeccC
Q 037458 169 NWATF 173 (196)
Q Consensus 169 ~~a~~ 173 (196)
..+.+
T Consensus 145 q~sts 149 (346)
T KOG0109|consen 145 QLSTS 149 (346)
T ss_pred eeecc
Confidence 77654
No 73
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.18 E-value=3e-11 Score=94.20 Aligned_cols=84 Identities=27% Similarity=0.461 Sum_probs=75.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 87 SGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 87 ~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
+..+++.+||.|.|..+++++.|.+.|.+|-.....++++|+.||+++||+||.|.+.+++.+|++.|+|..++ .+.|
T Consensus 185 ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVg--srpi 262 (290)
T KOG0226|consen 185 EWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVG--SRPI 262 (290)
T ss_pred cCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccc--cchh
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999996 4777
Q ss_pred EEEecc
Q 037458 167 RLNWAT 172 (196)
Q Consensus 167 ~v~~a~ 172 (196)
++..+.
T Consensus 263 klRkS~ 268 (290)
T KOG0226|consen 263 KLRKSE 268 (290)
T ss_pred Hhhhhh
Confidence 765443
No 74
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=99.16 E-value=4.6e-10 Score=76.60 Aligned_cols=82 Identities=15% Similarity=0.290 Sum_probs=72.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhc--CCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCC--CCccEE
Q 037458 92 NKTIWVGDLHHWMDENYLHSCFAST--GEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPN--TDQPFR 167 (196)
Q Consensus 92 ~~~lfVgnLp~~~te~~l~~~F~~~--G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~--~~~~i~ 167 (196)
.+||.|.|||...|.++|.+++... |....+.+..|..++.+.|||||.|.+.+.|.+..+.++|..+.. +.+.+.
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 3689999999999999999888763 677888899999999999999999999999999999999998863 366788
Q ss_pred EEeccC
Q 037458 168 LNWATF 173 (196)
Q Consensus 168 v~~a~~ 173 (196)
|.||+-
T Consensus 81 i~yAri 86 (97)
T PF04059_consen 81 ISYARI 86 (97)
T ss_pred EehhHh
Confidence 999874
No 75
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.15 E-value=1.1e-10 Score=97.27 Aligned_cols=78 Identities=17% Similarity=0.288 Sum_probs=69.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 87 SGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 87 ~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
......++|||.|||.++|+..|++.|..||.|+.+.|+. .|+++| .|.|.+.++|++|+..|+|..++ ++.|
T Consensus 531 gaarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~--Gr~I 603 (608)
T KOG4212|consen 531 GAARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLD--GRNI 603 (608)
T ss_pred cccccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCccc--Ccee
Confidence 4556788999999999999999999999999999999854 477777 89999999999999999999996 6999
Q ss_pred EEEec
Q 037458 167 RLNWA 171 (196)
Q Consensus 167 ~v~~a 171 (196)
+|.|+
T Consensus 604 ~V~y~ 608 (608)
T KOG4212|consen 604 KVTYF 608 (608)
T ss_pred eeeeC
Confidence 99874
No 76
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=3.9e-11 Score=104.81 Aligned_cols=83 Identities=20% Similarity=0.421 Sum_probs=76.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEE
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLN 169 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~ 169 (196)
...++|+|.|||+..+..+++.+|..||.|++|+|......+.++|||||+|-+..+|.+|+..|..+.+ .||.+.++
T Consensus 611 k~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHl--yGRrLVLE 688 (725)
T KOG0110|consen 611 KKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHL--YGRRLVLE 688 (725)
T ss_pred cccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccce--echhhhee
Confidence 3467999999999999999999999999999999988766678899999999999999999999998888 57999999
Q ss_pred eccCC
Q 037458 170 WATFS 174 (196)
Q Consensus 170 ~a~~~ 174 (196)
||+..
T Consensus 689 wA~~d 693 (725)
T KOG0110|consen 689 WAKSD 693 (725)
T ss_pred hhccc
Confidence 99875
No 77
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.10 E-value=1.9e-10 Score=94.04 Aligned_cols=81 Identities=23% Similarity=0.349 Sum_probs=72.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNW 170 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~ 170 (196)
..++||||+|+.++++++|+++|++||.|..+.++.|..+.+.+||+||.|++++++++++. ...+.|. ++.|.|..
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~--gk~vevkr 172 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFN--GKKVEVKR 172 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeec--CceeeEee
Confidence 46799999999999999999999999999999999999999999999999999999999875 4666774 68888887
Q ss_pred ccCC
Q 037458 171 ATFS 174 (196)
Q Consensus 171 a~~~ 174 (196)
|...
T Consensus 173 A~pk 176 (311)
T KOG4205|consen 173 AIPK 176 (311)
T ss_pred ccch
Confidence 7653
No 78
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=99.07 E-value=2.2e-10 Score=90.40 Aligned_cols=84 Identities=19% Similarity=0.397 Sum_probs=76.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
...+.+.+||||+...+|.+++...|+.||.|..+.+..|+.++.++||+||+|.+.+.++.++. |+|..|. ++.++
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~--~~~i~ 173 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIP--GPAIE 173 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccc--cccce
Confidence 45678899999999999999999999999999999999999999999999999999999999998 9999995 68888
Q ss_pred EEeccCC
Q 037458 168 LNWATFS 174 (196)
Q Consensus 168 v~~a~~~ 174 (196)
|.+.+..
T Consensus 174 vt~~r~~ 180 (231)
T KOG4209|consen 174 VTLKRTN 180 (231)
T ss_pred eeeeeee
Confidence 8876643
No 79
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.03 E-value=1.8e-09 Score=85.24 Aligned_cols=84 Identities=20% Similarity=0.323 Sum_probs=73.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
.+....+|+|.||+..+++++|+++|+.||.++.+.+..|+ +|.+.|.|-|.|...++|++|++.|+|..++ |+.++
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ld--G~~mk 155 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALD--GRPMK 155 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccC--Cceee
Confidence 33445789999999999999999999999999999999996 6999999999999999999999999997775 57788
Q ss_pred EEeccCC
Q 037458 168 LNWATFS 174 (196)
Q Consensus 168 v~~a~~~ 174 (196)
++.....
T Consensus 156 ~~~i~~~ 162 (243)
T KOG0533|consen 156 IEIISSP 162 (243)
T ss_pred eEEecCc
Confidence 8766543
No 80
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.01 E-value=4.6e-10 Score=86.88 Aligned_cols=71 Identities=20% Similarity=0.338 Sum_probs=64.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEecc
Q 037458 93 KTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWAT 172 (196)
Q Consensus 93 ~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~a~ 172 (196)
.+||||+|++.+.+.+|.++|..||.|.++.+.. ||+||+|.+..+|+.|+..|++.+|.+ ..+.|+|++
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~--e~~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCG--ERLVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecc--eeeeeeccc
Confidence 4799999999999999999999999999988743 799999999999999999999999974 449999998
Q ss_pred C
Q 037458 173 F 173 (196)
Q Consensus 173 ~ 173 (196)
.
T Consensus 72 ~ 72 (216)
T KOG0106|consen 72 G 72 (216)
T ss_pred c
Confidence 4
No 81
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.99 E-value=2.2e-09 Score=87.17 Aligned_cols=82 Identities=17% Similarity=0.293 Sum_probs=73.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCee--------EEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCC
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIA--------SIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPN 161 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~--------~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~ 161 (196)
..++.|||.|||.++|.+++.++|++||-|. .|+|.++.. |+.+|=|+|.|...++++.|+..|++..+.
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r- 209 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELR- 209 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCccccc-
Confidence 4467799999999999999999999999774 478888864 999999999999999999999999999994
Q ss_pred CCccEEEEeccCC
Q 037458 162 TDQPFRLNWATFS 174 (196)
Q Consensus 162 ~~~~i~v~~a~~~ 174 (196)
|+.|+|+.|+..
T Consensus 210 -g~~~rVerAkfq 221 (382)
T KOG1548|consen 210 -GKKLRVERAKFQ 221 (382)
T ss_pred -CcEEEEehhhhh
Confidence 799999988753
No 82
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.98 E-value=3e-10 Score=86.99 Aligned_cols=81 Identities=11% Similarity=0.150 Sum_probs=70.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
+.+..+||||+|+...++|+.|.++|-..|.|..|.|..++. ++.+ ||||+|.++.++..|++.+||..+. ++.+.
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~--~~e~q 80 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLE--EDEEQ 80 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhc--cchhh
Confidence 446789999999999999999999999999999999988764 5555 9999999999999999999999885 46666
Q ss_pred EEecc
Q 037458 168 LNWAT 172 (196)
Q Consensus 168 v~~a~ 172 (196)
+.+-.
T Consensus 81 ~~~r~ 85 (267)
T KOG4454|consen 81 RTLRC 85 (267)
T ss_pred ccccc
Confidence 65543
No 83
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.98 E-value=7.1e-10 Score=94.78 Aligned_cols=74 Identities=23% Similarity=0.308 Sum_probs=64.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 87 SGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 87 ~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
+.....++|+|-||+..+++++|+++|+.||+|+.|+.- -..+|.+||+|.|..+|++|+++|++.+|. ++.|
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~--~~~~ 142 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIA--GKRI 142 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhh--hhhh
Confidence 446678999999999999999999999999999997653 445699999999999999999999999995 4666
Q ss_pred E
Q 037458 167 R 167 (196)
Q Consensus 167 ~ 167 (196)
+
T Consensus 143 k 143 (549)
T KOG4660|consen 143 K 143 (549)
T ss_pred c
Confidence 6
No 84
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.95 E-value=8.1e-09 Score=87.31 Aligned_cols=102 Identities=18% Similarity=0.220 Sum_probs=76.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
+.....-|-+.+|||++|+++|.+||+.| .|.++.+. +.+|+..|-|||+|.+.+++++|++ .+...+. .|.|.
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~--r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg--~RYIE 79 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIP--RRNGRPSGEAYVEFTSEEDVEKALK-KDRESMG--HRYIE 79 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEe--ccCCCcCcceEEEeechHHHHHHHH-hhHHHhC--CceEE
Confidence 44566778899999999999999999998 46665544 4579999999999999999999997 4777774 47787
Q ss_pred EEeccCCCCC---CC---CCCCCCceEEecCCCC
Q 037458 168 LNWATFSTGD---KR---SDNGPDLSIFVGDLAA 195 (196)
Q Consensus 168 v~~a~~~~~~---~~---~~~~~~~~ifV~nL~~ 195 (196)
|--+.....+ ++ .+...+..|.+.+||+
T Consensus 80 Vf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPf 113 (510)
T KOG4211|consen 80 VFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPF 113 (510)
T ss_pred EEccCCccccccccCCCCCCCCCCceEEecCCCc
Confidence 7554322111 11 2235677899999997
No 85
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.91 E-value=3e-09 Score=93.20 Aligned_cols=83 Identities=28% Similarity=0.582 Sum_probs=72.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecC---CCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCcc
Q 037458 89 GGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNK---QTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQP 165 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~---~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~ 165 (196)
....+.||||||+..++++.|...|..||.|.+|+|+.-+ +....+.|+||.|-++.+|++|++.|+|..+ .+..
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv--~~~e 248 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV--MEYE 248 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee--eeee
Confidence 3456789999999999999999999999999999998754 2345567999999999999999999999998 4689
Q ss_pred EEEEeccC
Q 037458 166 FRLNWATF 173 (196)
Q Consensus 166 i~v~~a~~ 173 (196)
+++.|++.
T Consensus 249 ~K~gWgk~ 256 (877)
T KOG0151|consen 249 MKLGWGKA 256 (877)
T ss_pred eeeccccc
Confidence 99999864
No 86
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.91 E-value=5.6e-09 Score=88.56 Aligned_cols=81 Identities=17% Similarity=0.249 Sum_probs=65.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEE
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLN 169 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~ 169 (196)
....+|||+|||.++++++|+++|..||.|+...|....-.++..+||||+|.+.+++..||.+ +-..| .++++.|+
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~i--g~~kl~Ve 362 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEI--GGRKLNVE 362 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-Ccccc--CCeeEEEE
Confidence 3456699999999999999999999999999988866442345559999999999999999976 44444 46888887
Q ss_pred eccC
Q 037458 170 WATF 173 (196)
Q Consensus 170 ~a~~ 173 (196)
--+.
T Consensus 363 ek~~ 366 (419)
T KOG0116|consen 363 EKRP 366 (419)
T ss_pred eccc
Confidence 5544
No 87
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.74 E-value=2e-09 Score=92.00 Aligned_cols=105 Identities=16% Similarity=0.338 Sum_probs=83.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
++.+.+++|+--|...++..+|.+||+.+|.|.+|.+|.|+.++.++|.|||+|.+.+.+..|| .|.|..+. |.+|.
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrll--g~pv~ 251 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLL--GVPVI 251 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCccc--CceeE
Confidence 3456788999999999999999999999999999999999999999999999999999999999 58998884 67887
Q ss_pred EEeccCCCCCC---------CCCCCCCceEEecCCCC
Q 037458 168 LNWATFSTGDK---------RSDNGPDLSIFVGDLAA 195 (196)
Q Consensus 168 v~~a~~~~~~~---------~~~~~~~~~ifV~nL~~ 195 (196)
|.......+.. +.-.++-.+++||||.+
T Consensus 252 vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHf 288 (549)
T KOG0147|consen 252 VQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHF 288 (549)
T ss_pred ecccHHHHHHHHhccccccccccccchhhhhhccccc
Confidence 76543321111 11123333489999976
No 88
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.65 E-value=4e-08 Score=80.34 Aligned_cols=85 Identities=22% Similarity=0.267 Sum_probs=76.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCee--------EEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCC
Q 037458 89 GGENKTIWVGDLHHWMDENYLHSCFASTGEIA--------SIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMP 160 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~--------~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~ 160 (196)
.....+|||-+|+..+++++|.++|..||.|+ .|.|.+|++|++.||-|.|+|++...|++|+..+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 45678899999999999999999999999885 4678899999999999999999999999999999999995
Q ss_pred CCCccEEEEeccCCC
Q 037458 161 NTDQPFRLNWATFST 175 (196)
Q Consensus 161 ~~~~~i~v~~a~~~~ 175 (196)
+..|+|.+|...+
T Consensus 143 --gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 --GNTIKVSLAERRT 155 (351)
T ss_pred --CCCchhhhhhhcc
Confidence 4889998887544
No 89
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=3.1e-07 Score=78.36 Aligned_cols=63 Identities=17% Similarity=0.370 Sum_probs=48.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCC---CCccc---EEEEEEcCHHHHHHHHHHh
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQT---GLSEG---YGFVEFFTHATAEKVLQSY 154 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~t---g~~~g---~afV~F~~~~~A~~al~~l 154 (196)
-.++||||+|+++++|+.|...|..||.+. |.+....+. -..+| |+|+.|+++..+...+.+.
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 468999999999999999999999999864 444421111 12456 9999999998888766553
No 90
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.55 E-value=8.8e-08 Score=82.52 Aligned_cols=85 Identities=18% Similarity=0.422 Sum_probs=76.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
......++|||+|+..+++..+++++..||.++...++.|..+|.++||||.+|.+......|+..|||..+. ++.+.
T Consensus 285 ~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lg--d~~lv 362 (500)
T KOG0120|consen 285 VPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLG--DKKLV 362 (500)
T ss_pred cccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhc--CceeE
Confidence 3456788999999999999999999999999999999999999999999999999999999999999999995 57777
Q ss_pred EEeccCC
Q 037458 168 LNWATFS 174 (196)
Q Consensus 168 v~~a~~~ 174 (196)
|..|...
T Consensus 363 vq~A~~g 369 (500)
T KOG0120|consen 363 VQRAIVG 369 (500)
T ss_pred eehhhcc
Confidence 7776644
No 91
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.54 E-value=8.8e-08 Score=78.14 Aligned_cols=82 Identities=22% Similarity=0.436 Sum_probs=68.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcC--CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCcc
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTG--EIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQP 165 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G--~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~ 165 (196)
.......+|||||-|++|+++|.+.+...| .|.++++..++.+|.+||||+|...+..+.++.++.|--++|++. ..
T Consensus 76 ~~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ-~P 154 (498)
T KOG4849|consen 76 SEGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQ-SP 154 (498)
T ss_pred ccCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCC-CC
Confidence 334556799999999999999999998877 578888899999999999999999999999999999888888753 33
Q ss_pred EEEEe
Q 037458 166 FRLNW 170 (196)
Q Consensus 166 i~v~~ 170 (196)
+.+.|
T Consensus 155 ~V~~~ 159 (498)
T KOG4849|consen 155 TVLSY 159 (498)
T ss_pred eeecc
Confidence 43333
No 92
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.53 E-value=1.2e-07 Score=73.18 Aligned_cols=70 Identities=16% Similarity=0.200 Sum_probs=58.2
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCC
Q 037458 87 SGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMP 160 (196)
Q Consensus 87 ~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~ 160 (196)
.....+.||||.||..+|+|++|+.+|+.|.....++|... .....||++|++.+.|..|+..|.|..|.
T Consensus 205 ~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~----~g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 205 SGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR----GGMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred ccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC----CCcceEeecHHHHHHHHHHHHHhhcceec
Confidence 34456789999999999999999999999988777666432 22368999999999999999999998774
No 93
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.50 E-value=1e-06 Score=73.38 Aligned_cols=76 Identities=14% Similarity=0.310 Sum_probs=68.4
Q ss_pred CCEEEEcCCCCC-CCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q 037458 92 NKTIWVGDLHHW-MDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNW 170 (196)
Q Consensus 92 ~~~lfVgnLp~~-~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~ 170 (196)
+..|.|.||... +|.+.|..+|+.||.|.+|+|..++. --|+|.+.+...|..|++.|+|..|. |++|||.+
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~--gk~lrvt~ 369 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLY--GKKLRVTL 369 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceec--CceEEEee
Confidence 678889999765 89999999999999999999998864 57999999999999999999999994 69999999
Q ss_pred ccCC
Q 037458 171 ATFS 174 (196)
Q Consensus 171 a~~~ 174 (196)
++..
T Consensus 370 SKH~ 373 (492)
T KOG1190|consen 370 SKHT 373 (492)
T ss_pred ccCc
Confidence 8853
No 94
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.43 E-value=1.2e-06 Score=67.69 Aligned_cols=78 Identities=17% Similarity=0.351 Sum_probs=70.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEE
Q 037458 89 GGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRL 168 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v 168 (196)
.....+||+.|||..++.+.|..+|+.|...+.|+++..+. +.|||+|.+...|..|...|.|..|. +...++|
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~-----~iAfve~~~d~~a~~a~~~lq~~~it-~~~~m~i 216 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRS-----GIAFVEFLSDRQASAAQQALQGFKIT-KKNTMQI 216 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCC-----ceeEEecchhhhhHHHhhhhccceec-cCceEEe
Confidence 45678999999999999999999999999999999987653 79999999999999999999999996 3788999
Q ss_pred Eecc
Q 037458 169 NWAT 172 (196)
Q Consensus 169 ~~a~ 172 (196)
.+++
T Consensus 217 ~~a~ 220 (221)
T KOG4206|consen 217 TFAK 220 (221)
T ss_pred cccC
Confidence 8876
No 95
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.35 E-value=3.2e-06 Score=55.58 Aligned_cols=69 Identities=14% Similarity=0.219 Sum_probs=46.9
Q ss_pred CEEEEcCCCCCCCHHH----HHHHHHhcC-CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 93 KTIWVGDLHHWMDENY----LHSCFASTG-EIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 93 ~~lfVgnLp~~~te~~----l~~~F~~~G-~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
..|||.|||.+.+... |+.++..|| +|.+|. .+.|+|.|.+.+.|.+|.+.|+|..+ .|++|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdV--fG~kI~ 70 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDV--FGNKIS 70 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--S--SSS--E
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhccccc--ccceEE
Confidence 3699999999988765 566777887 566552 26899999999999999999999988 479999
Q ss_pred EEeccC
Q 037458 168 LNWATF 173 (196)
Q Consensus 168 v~~a~~ 173 (196)
|.|...
T Consensus 71 v~~~~~ 76 (90)
T PF11608_consen 71 VSFSPK 76 (90)
T ss_dssp EESS--
T ss_pred EEEcCC
Confidence 999753
No 96
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.27 E-value=8.5e-07 Score=72.26 Aligned_cols=82 Identities=26% Similarity=0.483 Sum_probs=71.0
Q ss_pred CCCEEE-EcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEE
Q 037458 91 ENKTIW-VGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLN 169 (196)
Q Consensus 91 ~~~~lf-VgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~ 169 (196)
...++| |++|+..+++++|+..|..+|.|..+++..+..++..+||+||+|.+...+..++.. ....+ .++.++++
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~ 259 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSI--GGRPLRLE 259 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcc--cCcccccc
Confidence 444555 999999999999999999999999999999999999999999999999999988865 56666 36889999
Q ss_pred eccCCC
Q 037458 170 WATFST 175 (196)
Q Consensus 170 ~a~~~~ 175 (196)
+.....
T Consensus 260 ~~~~~~ 265 (285)
T KOG4210|consen 260 EDEPRP 265 (285)
T ss_pred cCCCCc
Confidence 887653
No 97
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.24 E-value=3.9e-06 Score=58.40 Aligned_cols=59 Identities=22% Similarity=0.309 Sum_probs=39.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCC
Q 037458 93 KTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSI 157 (196)
Q Consensus 93 ~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~ 157 (196)
..|+|.++...++.++|++.|+.||.|..|.+.+.. ..|||.|.+.++|.+|+..+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhc
Confidence 468899999999999999999999999999987653 48999999999999998876544
No 98
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=98.15 E-value=3e-06 Score=70.94 Aligned_cols=72 Identities=19% Similarity=0.232 Sum_probs=58.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeec---CCC--CC--------cccEEEEEEcCHHHHHHHHHH
Q 037458 87 SGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRN---KQT--GL--------SEGYGFVEFFTHATAEKVLQS 153 (196)
Q Consensus 87 ~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d---~~t--g~--------~~g~afV~F~~~~~A~~al~~ 153 (196)
.++...++|.+-||+.+-.-+.|.++|+.||.|+.|+|+.- ..+ +. .+-+|||+|+..+.|.+|.+.
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 34567899999999999888999999999999999999865 222 22 245799999999999999987
Q ss_pred hCCCC
Q 037458 154 YTSIL 158 (196)
Q Consensus 154 l~g~~ 158 (196)
|+...
T Consensus 306 ~~~e~ 310 (484)
T KOG1855|consen 306 LNPEQ 310 (484)
T ss_pred hchhh
Confidence 75543
No 99
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.14 E-value=8.5e-06 Score=69.37 Aligned_cols=79 Identities=16% Similarity=0.201 Sum_probs=61.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeE-EEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEE
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIAS-IKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRL 168 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~-v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v 168 (196)
.....|-+.+||+.||+++|.+||+-.--+.. |.++.+. .+++.|-|||.|++.+.|++||.. |...|. .|-|.|
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~r-hre~iG--hRYIEv 176 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGR-HRENIG--HRYIEV 176 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHH-HHHhhc--cceEEe
Confidence 57788999999999999999999997654444 4455554 477889999999999999999974 666664 466666
Q ss_pred Eecc
Q 037458 169 NWAT 172 (196)
Q Consensus 169 ~~a~ 172 (196)
-.++
T Consensus 177 F~Ss 180 (510)
T KOG4211|consen 177 FRSS 180 (510)
T ss_pred ehhH
Confidence 5443
No 100
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.13 E-value=6.8e-06 Score=67.05 Aligned_cols=80 Identities=15% Similarity=0.291 Sum_probs=61.8
Q ss_pred CCEEEEcCCCCCCCHHH----H--HHHHHhcCCeeEEEEeecCCC-CCccc-E-EEEEEcCHHHHHHHHHHhCCCCCCCC
Q 037458 92 NKTIWVGDLHHWMDENY----L--HSCFASTGEIASIKVIRNKQT-GLSEG-Y-GFVEFFTHATAEKVLQSYTSILMPNT 162 (196)
Q Consensus 92 ~~~lfVgnLp~~~te~~----l--~~~F~~~G~i~~v~i~~d~~t-g~~~g-~-afV~F~~~~~A~~al~~l~g~~~~~~ 162 (196)
..-+||-+|+..+..++ | .++|..||.|..|.|-+.-.+ ....+ + .||+|.+.++|.+||...+|..++
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D-- 191 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD-- 191 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc--
Confidence 34589999999877666 2 489999999999877554311 11122 2 399999999999999999999996
Q ss_pred CccEEEEeccC
Q 037458 163 DQPFRLNWATF 173 (196)
Q Consensus 163 ~~~i~v~~a~~ 173 (196)
||.|+..|...
T Consensus 192 Gr~lkatYGTT 202 (480)
T COG5175 192 GRVLKATYGTT 202 (480)
T ss_pred CceEeeecCch
Confidence 69999988765
No 101
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=1.1e-05 Score=69.09 Aligned_cols=65 Identities=17% Similarity=0.227 Sum_probs=60.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHH-hcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHH
Q 037458 89 GGENKTIWVGDLHHWMDENYLHSCFA-STGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQS 153 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~~te~~l~~~F~-~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~ 153 (196)
-+..+|||||+|+.-++.++|..+|+ .||.|.-+-|-.|.+-+..+|-|=|+|.+..+-.+||.+
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 46789999999999999999999999 799999999999988899999999999999999999875
No 102
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=1.6e-05 Score=68.80 Aligned_cols=79 Identities=19% Similarity=0.285 Sum_probs=64.7
Q ss_pred CCCCEEEEcCCCCCCC------HHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCC
Q 037458 90 GENKTIWVGDLHHWMD------ENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTD 163 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~t------e~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~ 163 (196)
.-...|+|.|+|---. ..-|.++|+++|+|..+.+..+..+ ..+||.|++|.+..+|+.|++.|||+.|+ ..
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~g-gtkG~lf~E~~~~~~A~~aVK~l~G~~ld-kn 133 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEG-GTKGYLFVEYASMRDAKKAVKSLNGKRLD-KN 133 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccC-CeeeEEEEEecChhhHHHHHHhcccceec-cc
Confidence 4567789999986422 2356789999999999999888664 49999999999999999999999999998 45
Q ss_pred ccEEEEe
Q 037458 164 QPFRLNW 170 (196)
Q Consensus 164 ~~i~v~~ 170 (196)
..+.|..
T Consensus 134 Htf~v~~ 140 (698)
T KOG2314|consen 134 HTFFVRL 140 (698)
T ss_pred ceEEeeh
Confidence 6666654
No 103
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.08 E-value=3.4e-06 Score=66.33 Aligned_cols=71 Identities=15% Similarity=0.353 Sum_probs=60.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCC--------CCccc----EEEEEEcCHHHHHHHHHHhCCCC
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQT--------GLSEG----YGFVEFFTHATAEKVLQSYTSIL 158 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~t--------g~~~g----~afV~F~~~~~A~~al~~l~g~~ 158 (196)
....||+++||+.++-..|+++|+.||.|-.|.+-....+ |.+++ -|+|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3467999999999999999999999999999988765544 22222 37899999999999999999999
Q ss_pred CCC
Q 037458 159 MPN 161 (196)
Q Consensus 159 ~~~ 161 (196)
|++
T Consensus 153 Igg 155 (278)
T KOG3152|consen 153 IGG 155 (278)
T ss_pred cCC
Confidence 975
No 104
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.05 E-value=8.3e-05 Score=61.60 Aligned_cols=80 Identities=20% Similarity=0.298 Sum_probs=69.7
Q ss_pred CCCCCCCEEEEcCCCCC-CCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCcc
Q 037458 87 SGGGENKTIWVGDLHHW-MDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQP 165 (196)
Q Consensus 87 ~~~~~~~~lfVgnLp~~-~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~ 165 (196)
....+...+.|.+|... ++.+.|..+|..||.|++|++++.+. |-|.|++.+..+.++|+..||+..+ .|.+
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~-----gtamVemgd~~aver~v~hLnn~~l--fG~k 354 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP-----GTAMVEMGDAYAVERAVTHLNNIPL--FGGK 354 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc-----ceeEEEcCcHHHHHHHHHHhccCcc--ccce
Confidence 34567889999999876 67788999999999999999998764 8999999999999999999999988 4688
Q ss_pred EEEEeccC
Q 037458 166 FRLNWATF 173 (196)
Q Consensus 166 i~v~~a~~ 173 (196)
|.|..++-
T Consensus 355 l~v~~SkQ 362 (494)
T KOG1456|consen 355 LNVCVSKQ 362 (494)
T ss_pred EEEeeccc
Confidence 88887765
No 105
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.02 E-value=1.6e-05 Score=66.30 Aligned_cols=78 Identities=13% Similarity=0.232 Sum_probs=65.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccE-EEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEE
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGY-GFVEFFTHATAEKVLQSYTSILMPNTDQPFRLN 169 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~-afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~ 169 (196)
..-+++|+|+-+-++-+-|..+|++||.|.+|.-... +.|| |+|.|.+.+.|..|...|+|..|.+..+.+||+
T Consensus 149 ~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~K-----nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId 223 (492)
T KOG1190|consen 149 PVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTK-----NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRID 223 (492)
T ss_pred eeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEec-----ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEee
Confidence 3456889999999999999999999999987644322 2244 899999999999999999999998777889999
Q ss_pred eccC
Q 037458 170 WATF 173 (196)
Q Consensus 170 ~a~~ 173 (196)
|++-
T Consensus 224 ~Skl 227 (492)
T KOG1190|consen 224 FSKL 227 (492)
T ss_pred hhhc
Confidence 9875
No 106
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.01 E-value=4.4e-05 Score=63.20 Aligned_cols=84 Identities=13% Similarity=0.182 Sum_probs=67.1
Q ss_pred CCCCCCCEEEEc--CCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCc
Q 037458 87 SGGGENKTIWVG--DLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQ 164 (196)
Q Consensus 87 ~~~~~~~~lfVg--nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~ 164 (196)
++...++.|.+. |--+-+|-+-|..+...+|+|.+|.|.+. +| --|.|||++.+.|.+|.++|||..|-..-.
T Consensus 115 es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFdsv~~AqrAk~alNGADIYsGCC 189 (494)
T KOG1456|consen 115 ESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDSVEVAQRAKAALNGADIYSGCC 189 (494)
T ss_pred CCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeechhHHHHHHHhhcccccccccce
Confidence 344455555554 44456899999999999999999988765 22 369999999999999999999999876568
Q ss_pred cEEEEeccCCC
Q 037458 165 PFRLNWATFST 175 (196)
Q Consensus 165 ~i~v~~a~~~~ 175 (196)
.|+|+||+...
T Consensus 190 TLKIeyAkP~r 200 (494)
T KOG1456|consen 190 TLKIEYAKPTR 200 (494)
T ss_pred eEEEEecCcce
Confidence 89999999753
No 107
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.93 E-value=8e-06 Score=63.46 Aligned_cols=75 Identities=16% Similarity=0.268 Sum_probs=63.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEE
Q 037458 89 GGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRL 168 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v 168 (196)
....+.|+|.++..++.+.+|.+.|+.+|.+....+ .++++||+|.+.++|.+|+..|++..+. ++.|++
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~--~~~l~~ 165 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLN--GRRISV 165 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhc--Cceeee
Confidence 456788999999999999999999999999844433 2369999999999999999999999995 578888
Q ss_pred EeccC
Q 037458 169 NWATF 173 (196)
Q Consensus 169 ~~a~~ 173 (196)
.+...
T Consensus 166 ~~~~~ 170 (216)
T KOG0106|consen 166 EKNSR 170 (216)
T ss_pred cccCc
Confidence 65543
No 108
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.90 E-value=3.7e-05 Score=46.67 Aligned_cols=52 Identities=27% Similarity=0.318 Sum_probs=41.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHH
Q 037458 93 KTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVL 151 (196)
Q Consensus 93 ~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al 151 (196)
+.|-|.+.+.+.. ++++++|..||+|.++.+-.+ ..+.||.|.++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 4677888887765 446668999999999887522 359999999999999985
No 109
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=97.87 E-value=3e-05 Score=68.20 Aligned_cols=71 Identities=20% Similarity=0.372 Sum_probs=61.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEE
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLN 169 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~ 169 (196)
....++|||||...+..+.++.++..||.|.+++.+. |||++|.......+|+..++-..+++.+...+++
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 4678999999999999999999999999999887642 9999999999999999998888887666666664
No 110
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.85 E-value=7e-05 Score=66.41 Aligned_cols=77 Identities=14% Similarity=0.181 Sum_probs=64.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCe-eEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEE
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFASTGEI-ASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLN 169 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~~~G~i-~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~ 169 (196)
..+.|-+.|+|++++-+||.+||..|-.+ .+|.+.++ +.|...|-|.|.|++.++|.+|...|++..|. .++|++.
T Consensus 866 Gp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~--nr~V~l~ 942 (944)
T KOG4307|consen 866 GPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIR--NRVVSLR 942 (944)
T ss_pred CCeEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCccc--ceeEEEE
Confidence 34578899999999999999999999755 44555544 45899999999999999999999999999995 4777665
Q ss_pred e
Q 037458 170 W 170 (196)
Q Consensus 170 ~ 170 (196)
.
T Consensus 943 i 943 (944)
T KOG4307|consen 943 I 943 (944)
T ss_pred e
Confidence 3
No 111
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.77 E-value=7.1e-06 Score=74.23 Aligned_cols=96 Identities=16% Similarity=0.328 Sum_probs=74.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEE
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLN 169 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~ 169 (196)
..+++||+|||...+++.+|+..|..+|.|.+|.|-+-+ -+.-..|+||.|.+...+-.|+..+.+..|......+.+.
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 457899999999999999999999999999999886653 2444569999999999999999889998886543333333
Q ss_pred eccCCCCCCCCCCCCCceEEecCCCC
Q 037458 170 WATFSTGDKRSDNGPDLSIFVGDLAA 195 (196)
Q Consensus 170 ~a~~~~~~~~~~~~~~~~ifV~nL~~ 195 (196)
+-+ ......+|||+|.+
T Consensus 449 ~~k---------st~ttr~~sgglg~ 465 (975)
T KOG0112|consen 449 QPK---------STPTTRLQSGGLGP 465 (975)
T ss_pred ccc---------cccceeeccCCCCC
Confidence 211 34556788888764
No 112
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.74 E-value=0.0003 Score=53.10 Aligned_cols=68 Identities=15% Similarity=0.202 Sum_probs=60.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCC
Q 037458 89 GGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTD 163 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~ 163 (196)
.....+|.|.+||.+.++.+|+++..+.|.|....+.+| |++.|+|...++.+-|++.|....+...|
T Consensus 112 rrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~seG 179 (241)
T KOG0105|consen 112 RRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFRSEG 179 (241)
T ss_pred cccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccccCcC
Confidence 345678999999999999999999999999999999888 69999999999999999999987775333
No 113
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.65 E-value=0.00015 Score=49.82 Aligned_cols=79 Identities=11% Similarity=0.059 Sum_probs=51.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCC-------CCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCC
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQ-------TGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTD 163 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~-------tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~ 163 (196)
..+-|.|-+.|.. ....|.+.|++||.|.+..-..... .-....+..|+|++..+|.+||. .||..+.+ .
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g-~ 81 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSG-S 81 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETT-C
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcC-c
Confidence 4556778888888 4567888999999998775111000 01223689999999999999997 59999863 4
Q ss_pred ccEEEEecc
Q 037458 164 QPFRLNWAT 172 (196)
Q Consensus 164 ~~i~v~~a~ 172 (196)
..+-|.|.+
T Consensus 82 ~mvGV~~~~ 90 (100)
T PF05172_consen 82 LMVGVKPCD 90 (100)
T ss_dssp EEEEEEE-H
T ss_pred EEEEEEEcH
Confidence 556677764
No 114
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.64 E-value=8.7e-05 Score=67.42 Aligned_cols=81 Identities=15% Similarity=0.268 Sum_probs=71.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
.....+.+|||+|..|+....|...|..||.|..|.+-.. .-|+||.|++...+..|++.|.|..|++-.+.++
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 5567889999999999999999999999999999876332 3599999999999999999999999987788899
Q ss_pred EEeccCC
Q 037458 168 LNWATFS 174 (196)
Q Consensus 168 v~~a~~~ 174 (196)
|.|+..-
T Consensus 525 vdla~~~ 531 (975)
T KOG0112|consen 525 VDLASPP 531 (975)
T ss_pred cccccCC
Confidence 9998763
No 115
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.57 E-value=8.8e-05 Score=64.69 Aligned_cols=81 Identities=7% Similarity=0.150 Sum_probs=65.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHh-cCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCC-CCcc
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFAS-TGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPN-TDQP 165 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~-~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~-~~~~ 165 (196)
.......|||.||-.-+|...|++++.+ +|.|.+. || | +.+..|||.|.+.++|.+.+.+|||..|.. ..+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm-D----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM-D----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH-HH-H----HhhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 4567789999999999999999999995 5566655 33 3 234689999999999999999999998873 3677
Q ss_pred EEEEeccCC
Q 037458 166 FRLNWATFS 174 (196)
Q Consensus 166 i~v~~a~~~ 174 (196)
|.+.|+...
T Consensus 514 L~adf~~~d 522 (718)
T KOG2416|consen 514 LIADFVRAD 522 (718)
T ss_pred eEeeecchh
Confidence 888887653
No 116
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.54 E-value=0.00025 Score=61.59 Aligned_cols=63 Identities=16% Similarity=0.238 Sum_probs=50.1
Q ss_pred HHHHHHHhcCCeeEEEEeecC---CCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEecc
Q 037458 108 YLHSCFASTGEIASIKVIRNK---QTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWAT 172 (196)
Q Consensus 108 ~l~~~F~~~G~i~~v~i~~d~---~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~a~ 172 (196)
+++.-+++||.|.+|.+.++- ...-..|..||+|.+.+++++|.++|+|..+. +|.|...|-.
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~--nRtVvtsYyd 490 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFA--NRTVVASYYD 490 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeC--CcEEEEEecC
Confidence 344555679999999998762 22345678999999999999999999999996 5888887754
No 117
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.50 E-value=0.00017 Score=59.94 Aligned_cols=78 Identities=13% Similarity=0.135 Sum_probs=63.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCC-eeE--EEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEE
Q 037458 92 NKTIWVGDLHHWMDENYLHSCFASTGE-IAS--IKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRL 168 (196)
Q Consensus 92 ~~~lfVgnLp~~~te~~l~~~F~~~G~-i~~--v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v 168 (196)
...|.+++||+..+.++|.++|..|.. |.. |.++.+- -|+..|-|||+|.+.++|.+|....+.+.. ++|.|.|
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~m--k~RYiEv 356 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLM--KSRYIEV 356 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhc--ccceEEE
Confidence 667899999999999999999999873 433 7777774 488899999999999999999887777666 4677877
Q ss_pred Eecc
Q 037458 169 NWAT 172 (196)
Q Consensus 169 ~~a~ 172 (196)
--++
T Consensus 357 fp~S 360 (508)
T KOG1365|consen 357 FPCS 360 (508)
T ss_pred eecc
Confidence 5544
No 118
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.47 E-value=0.00086 Score=41.84 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=45.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhc---CCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHh
Q 037458 92 NKTIWVGDLHHWMDENYLHSCFAST---GEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSY 154 (196)
Q Consensus 92 ~~~lfVgnLp~~~te~~l~~~F~~~---G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l 154 (196)
..+|+|.++. +++.++|+.+|..| .....|.++-|. -|-|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4579999995 47788899999998 245789999884 6889999999999999764
No 119
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.43 E-value=0.0011 Score=54.47 Aligned_cols=80 Identities=13% Similarity=0.175 Sum_probs=61.6
Q ss_pred CCCCCCCEEEEcCCCC----CCC-------HHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q 037458 87 SGGGENKTIWVGDLHH----WMD-------ENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYT 155 (196)
Q Consensus 87 ~~~~~~~~lfVgnLp~----~~t-------e~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~ 155 (196)
+.....++|.|.||-. ..+ .++|++-.++||.|.+|.|.- ....|.+-|.|.+.++|..||+.|+
T Consensus 260 sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~ 335 (382)
T KOG1548|consen 260 SKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMD 335 (382)
T ss_pred ccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhc
Confidence 3445678999998832 222 356677789999999998753 2355999999999999999999999
Q ss_pred CCCCCCCCccEEEEecc
Q 037458 156 SILMPNTDQPFRLNWAT 172 (196)
Q Consensus 156 g~~~~~~~~~i~v~~a~ 172 (196)
|.-++ ||.|......
T Consensus 336 GR~fd--gRql~A~i~D 350 (382)
T KOG1548|consen 336 GRWFD--GRQLTASIWD 350 (382)
T ss_pred Ceeec--ceEEEEEEeC
Confidence 99996 5888766544
No 120
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.38 E-value=9e-05 Score=62.32 Aligned_cols=75 Identities=16% Similarity=0.259 Sum_probs=56.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEecc
Q 037458 93 KTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWAT 172 (196)
Q Consensus 93 ~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~a~ 172 (196)
.++|+|||.+.++..+|+.+|...-.-.+-.++.. .||+||++.+...|.+|++.++|..-. .|+++.++++-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~el-qGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVEL-QGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhhh-cCceeeccchh
Confidence 46899999999999999999976522112222221 289999999999999999999996443 57888888865
Q ss_pred CC
Q 037458 173 FS 174 (196)
Q Consensus 173 ~~ 174 (196)
.+
T Consensus 75 ~k 76 (584)
T KOG2193|consen 75 PK 76 (584)
T ss_pred hH
Confidence 43
No 121
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.35 E-value=1.2e-05 Score=72.53 Aligned_cols=69 Identities=23% Similarity=0.358 Sum_probs=60.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCC
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILM 159 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~ 159 (196)
+..++||.||+..+.+.+|...|..+|.+..+.+...+.+++.+|+|||+|...+.+.+|+....++.+
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~ 734 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF 734 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh
Confidence 346799999999999999999999999988888776667799999999999999999999976555554
No 122
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.29 E-value=0.00026 Score=57.79 Aligned_cols=104 Identities=20% Similarity=0.220 Sum_probs=74.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCC-CCCCCCccEEE
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSI-LMPNTDQPFRL 168 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~-~~~~~~~~i~v 168 (196)
....++|+|++.+.+.+.++..++..+|.+..+.+........++|++++.|...+.+..|+.. .+. .+. ++.+..
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~-s~~~~~~--~~~~~~ 162 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEE-SGSKVLD--GNKGEK 162 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHh-hhccccc--cccccC
Confidence 3578899999999999999999999999888888887777788999999999999999999964 553 333 233333
Q ss_pred EeccCC-----CCCCCCCCCCCceEE-ecCCCCC
Q 037458 169 NWATFS-----TGDKRSDNGPDLSIF-VGDLAAD 196 (196)
Q Consensus 169 ~~a~~~-----~~~~~~~~~~~~~if-V~nL~~d 196 (196)
.+.... ....+.......++| |++|+++
T Consensus 163 dl~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~ 196 (285)
T KOG4210|consen 163 DLNTRRGLRPKNKLSRLSSGPSDTIFFVGELDFS 196 (285)
T ss_pred cccccccccccchhcccccCccccceeecccccc
Confidence 222211 111122334445565 9999874
No 123
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.24 E-value=0.00043 Score=54.68 Aligned_cols=75 Identities=19% Similarity=0.255 Sum_probs=59.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhC--CCCCCCCCccEEE
Q 037458 93 KTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYT--SILMPNTDQPFRL 168 (196)
Q Consensus 93 ~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~--g~~~~~~~~~i~v 168 (196)
..|||.||...++.+.|...|+.||.|....++.|- .++..+-++|+|...-.|.+|++.++ |.-+..+++.+-|
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~V 108 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGV 108 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCC
Confidence 789999999999999999999999999887777663 47888999999999999999988763 3333333444444
No 124
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.23 E-value=0.0011 Score=53.46 Aligned_cols=65 Identities=14% Similarity=0.100 Sum_probs=51.6
Q ss_pred HHHHHHHHHhcCCeeEEEEeecCCCCCcc-cEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEecc
Q 037458 106 ENYLHSCFASTGEIASIKVIRNKQTGLSE-GYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWAT 172 (196)
Q Consensus 106 e~~l~~~F~~~G~i~~v~i~~d~~tg~~~-g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~a~ 172 (196)
++++++.+++||.|..|.|..++.--... --.||+|+..++|.+|+-.|||..|+ ||.++.+|-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFG--Gr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFG--GRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceec--ceeeeheecc
Confidence 35678889999999999887765322222 24799999999999999999999995 6888887754
No 125
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.19 E-value=0.00068 Score=58.82 Aligned_cols=83 Identities=10% Similarity=0.198 Sum_probs=60.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHh----------------------------cCCeeEEEEeecCCCCCcccEEEEEEc
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFAS----------------------------TGEIASIKVIRNKQTGLSEGYGFVEFF 142 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~~----------------------------~G~i~~v~i~~d~~tg~~~g~afV~F~ 142 (196)
...++-|+||+...+..+|..++.. .|.-..+.+..|-.+....|||||.|.
T Consensus 360 ~Rtt~~i~ni~n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~ 439 (549)
T KOG4660|consen 360 RRTTVMIKNIPNKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMT 439 (549)
T ss_pred chhhhhhhccccchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeec
Confidence 3455666677665555555554432 345556677777777888999999999
Q ss_pred CHHHHHHHHHHhCCCCCC--CCCccEEEEeccC
Q 037458 143 THATAEKVLQSYTSILMP--NTDQPFRLNWATF 173 (196)
Q Consensus 143 ~~~~A~~al~~l~g~~~~--~~~~~i~v~~a~~ 173 (196)
+.+++..+.+++||+.+. +..+.+++.||+-
T Consensus 440 sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArI 472 (549)
T KOG4660|consen 440 SPEAIIRFYKAFNGKKWEKFNSEKIASITYARI 472 (549)
T ss_pred CHHHHHHHHHHHcCCchhhhcceeeeeeehhhh
Confidence 999999999999998776 2456677888764
No 126
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.15 E-value=0.00025 Score=64.24 Aligned_cols=77 Identities=16% Similarity=0.176 Sum_probs=64.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNW 170 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~ 170 (196)
...+|||.|+++..|.++|+.++..+|.+.+++++..+ .|+.+|.+||.|.+..++.+++...+...+. .+.+.|..
T Consensus 735 gK~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~r--E~~~~v~v 811 (881)
T KOG0128|consen 735 GKISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKR--ENNGEVQV 811 (881)
T ss_pred hhhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhh--hcCccccc
Confidence 35689999999999999999999999999999988886 4999999999999999999988766665553 34444444
No 127
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.12 E-value=0.0023 Score=46.73 Aligned_cols=74 Identities=19% Similarity=0.240 Sum_probs=50.3
Q ss_pred CCCCEEEEcCCC------CCCCH---HHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCC
Q 037458 90 GENKTIWVGDLH------HWMDE---NYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMP 160 (196)
Q Consensus 90 ~~~~~lfVgnLp------~~~te---~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~ 160 (196)
..+.||.|.-+. ....+ .+|.+.|..||++.-++++.+ .-+|+|.+-..|.+|+. ++|..+.
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~ 95 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVN 95 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEET
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEEC
Confidence 356677676554 12333 267788888999988887654 57999999999999995 8999994
Q ss_pred CCCccEEEEeccCC
Q 037458 161 NTDQPFRLNWATFS 174 (196)
Q Consensus 161 ~~~~~i~v~~a~~~ 174 (196)
|+.|+|..-+..
T Consensus 96 --g~~l~i~LKtpd 107 (146)
T PF08952_consen 96 --GRTLKIRLKTPD 107 (146)
T ss_dssp --TEEEEEEE----
T ss_pred --CEEEEEEeCCcc
Confidence 688888765543
No 128
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.10 E-value=0.0023 Score=53.49 Aligned_cols=68 Identities=16% Similarity=0.176 Sum_probs=52.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHh----cCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCC
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFAS----TGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILM 159 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~----~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~ 159 (196)
+.--.|.+++||+++++.++.++|.. -|..+.|.+++.. .|+..|-|||.|..+++|..||.+ |...|
T Consensus 159 ~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~i 230 (508)
T KOG1365|consen 159 ENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNI 230 (508)
T ss_pred ccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHH
Confidence 34456778899999999999999963 2345666666654 488889999999999999999975 44444
No 129
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.06 E-value=0.00084 Score=56.05 Aligned_cols=68 Identities=13% Similarity=0.256 Sum_probs=54.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCC---CCCcccEEEEEEcCHHHHHHHHHHhCCCCC
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQ---TGLSEGYGFVEFFTHATAEKVLQSYTSILM 159 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~---tg~~~g~afV~F~~~~~A~~al~~l~g~~~ 159 (196)
....|-|.||...+|.+.++.+|...|+|..+.|+.+.. .......|||.|.+...+..|-. |.++.+
T Consensus 6 ~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvf 76 (479)
T KOG4676|consen 6 SLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVF 76 (479)
T ss_pred CCceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hcccee
Confidence 344899999999999999999999999999999876332 23345689999999999888865 555554
No 130
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.01 E-value=0.00045 Score=54.59 Aligned_cols=54 Identities=22% Similarity=0.312 Sum_probs=45.6
Q ss_pred hcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEec
Q 037458 115 STGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWA 171 (196)
Q Consensus 115 ~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~a 171 (196)
+||+|+++.|..+. .-..+|-+||.|...++|++|+..||+.-+. |+.|..++.
T Consensus 92 kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~--G~pi~ae~~ 145 (260)
T KOG2202|consen 92 KYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYN--GRPIHAELS 145 (260)
T ss_pred Hhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCcccc--CCcceeeec
Confidence 89999999877664 2456788999999999999999999999885 688887765
No 131
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.88 E-value=0.0047 Score=40.74 Aligned_cols=57 Identities=14% Similarity=0.253 Sum_probs=43.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCC
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTS 156 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g 156 (196)
.....||+ .|..+...+|..+|+.||.| .|.++.| .-|||...+++.|..++..+.-
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 34455666 99999999999999999996 4777777 4899999999999999988763
No 132
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.83 E-value=0.019 Score=40.14 Aligned_cols=69 Identities=12% Similarity=0.150 Sum_probs=51.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcC-CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCC
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFASTG-EIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPN 161 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~~~G-~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~ 161 (196)
....+.+...+..++.++|..+.+.+- .|..++|++|. ..++-.+++.|.+.++|+...+.+||+.+..
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 344455556666677777776666654 57788998874 2355678999999999999999999998863
No 133
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=96.56 E-value=0.0017 Score=58.95 Aligned_cols=75 Identities=17% Similarity=0.169 Sum_probs=64.5
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEeccC
Q 037458 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWATF 173 (196)
Q Consensus 94 ~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~a~~ 173 (196)
+.++.|..-..+-..|..+|+.||+|.+.+.++|. ..|.|+|.+.+.|..|+++|.|+++...|-+.+|.+|+.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 34445556677888999999999999999988886 489999999999999999999998876788999999986
Q ss_pred C
Q 037458 174 S 174 (196)
Q Consensus 174 ~ 174 (196)
.
T Consensus 374 ~ 374 (1007)
T KOG4574|consen 374 L 374 (1007)
T ss_pred c
Confidence 4
No 134
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.55 E-value=0.001 Score=54.58 Aligned_cols=79 Identities=10% Similarity=0.201 Sum_probs=59.0
Q ss_pred CEEEEcCCCCCCCHHHH---HHHHHhcCCeeEEEEeecCC--CCC-cccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 93 KTIWVGDLHHWMDENYL---HSCFASTGEIASIKVIRNKQ--TGL-SEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 93 ~~lfVgnLp~~~te~~l---~~~F~~~G~i~~v~i~~d~~--tg~-~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
.-+||-+|+....++++ .+.|..||.|.+|.+.++.. .+. ...-++|+|...++|..||...+|..++ ++.+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~d--g~~l 155 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDD--GRAL 155 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhh--hhhh
Confidence 55788888888665554 37889999999998887662 111 1123899999999999999999999886 4667
Q ss_pred EEEeccC
Q 037458 167 RLNWATF 173 (196)
Q Consensus 167 ~v~~a~~ 173 (196)
+..+...
T Consensus 156 ka~~gtt 162 (327)
T KOG2068|consen 156 KASLGTT 162 (327)
T ss_pred HHhhCCC
Confidence 7666554
No 135
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.49 E-value=0.024 Score=41.25 Aligned_cols=75 Identities=20% Similarity=0.181 Sum_probs=55.0
Q ss_pred CCCCCCEEEEcCCCCCCC----HHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCC
Q 037458 88 GGGENKTIWVGDLHHWMD----ENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTD 163 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~t----e~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~ 163 (196)
.+..-.||.|.=|..++. -..+...++.||.|.+|.+.- +--|.|.|.+..+|-+|+.++..... |
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s~~p---g 151 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQSRAP---G 151 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcCCCC---C
Confidence 345667888886665542 234556678899999998742 24799999999999999998877443 5
Q ss_pred ccEEEEecc
Q 037458 164 QPFRLNWAT 172 (196)
Q Consensus 164 ~~i~v~~a~ 172 (196)
..+...|-.
T Consensus 152 tm~qCsWqq 160 (166)
T PF15023_consen 152 TMFQCSWQQ 160 (166)
T ss_pred ceEEeeccc
Confidence 778888854
No 136
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.28 E-value=0.0041 Score=47.27 Aligned_cols=84 Identities=8% Similarity=0.107 Sum_probs=50.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHh-cCCe---eEEEEeecC-CCC-CcccEEEEEEcCHHHHHHHHHHhCCCCCCCC-
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFAS-TGEI---ASIKVIRNK-QTG-LSEGYGFVEFFTHATAEKVLQSYTSILMPNT- 162 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~-~G~i---~~v~i~~d~-~tg-~~~g~afV~F~~~~~A~~al~~l~g~~~~~~- 162 (196)
....+|.|++||+++|++++.+.++. ++.- ..+.-..+. ... ..-.-|||.|.+.+++...+..++|..+.+.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 45669999999999999999887766 5554 223211221 111 1234699999999999999999999766422
Q ss_pred C--ccEEEEeccC
Q 037458 163 D--QPFRLNWATF 173 (196)
Q Consensus 163 ~--~~i~v~~a~~ 173 (196)
| ....|++|-.
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 2 2356777754
No 137
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=96.15 E-value=0.044 Score=35.38 Aligned_cols=67 Identities=18% Similarity=0.320 Sum_probs=38.4
Q ss_pred EEEEc-CCCCCCCHHHHHHHHHhcCC-----eeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 94 TIWVG-DLHHWMDENYLHSCFASTGE-----IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 94 ~lfVg-nLp~~~te~~l~~~F~~~G~-----i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
++||. +--..++..+|..++...+. |-.|++.. .|+||+-.. +.|+.+++.|++..+. |+.|+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~-~~a~~v~~~l~~~~~~--gk~v~ 70 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPE-EVAEKVLEALNGKKIK--GKKVR 70 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-T-T-HHHHHHHHTT--SS--S----
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECH-HHHHHHHHHhcCCCCC--CeeEE
Confidence 45553 23345788889888887754 45666644 389998875 4788899999999995 68888
Q ss_pred EEec
Q 037458 168 LNWA 171 (196)
Q Consensus 168 v~~a 171 (196)
|+.|
T Consensus 71 ve~A 74 (74)
T PF03880_consen 71 VERA 74 (74)
T ss_dssp EEE-
T ss_pred EEEC
Confidence 8764
No 138
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.03 E-value=0.02 Score=51.46 Aligned_cols=80 Identities=18% Similarity=0.168 Sum_probs=62.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeE-EEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 89 GGENKTIWVGDLHHWMDENYLHSCFASTGEIAS-IKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~-v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
......|||-.||..+++.++.++|...-.|++ |.|.+.+ +++.++.|||+|...+++..|+..-+-..+ ..+.|+
T Consensus 431 ~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~--G~r~ir 507 (944)
T KOG4307|consen 431 GGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYP--GHRIIR 507 (944)
T ss_pred CCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhccccccc--CceEEE
Confidence 356788999999999999999999998877776 6666554 578889999999998888887654344444 357788
Q ss_pred EEec
Q 037458 168 LNWA 171 (196)
Q Consensus 168 v~~a 171 (196)
|.-.
T Consensus 508 v~si 511 (944)
T KOG4307|consen 508 VDSI 511 (944)
T ss_pred eech
Confidence 8643
No 139
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.90 E-value=0.054 Score=47.67 Aligned_cols=84 Identities=24% Similarity=0.290 Sum_probs=66.7
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHHHhc----CCeeEEEEeecC----------CCCC---------------------
Q 037458 89 GGENKTIWVGDLHHW-MDENYLHSCFAST----GEIASIKVIRNK----------QTGL--------------------- 132 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~-~te~~l~~~F~~~----G~i~~v~i~~d~----------~tg~--------------------- 132 (196)
....++|-|-||.|+ +..++|..+|+.| |.|.+|.|.... ..|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456789999999998 7888999999887 689998876432 1111
Q ss_pred ---------------cc-cEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEecc
Q 037458 133 ---------------SE-GYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWAT 172 (196)
Q Consensus 133 ---------------~~-g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~a~ 172 (196)
.+ =||.|+|.+.+.|.+....++|..+...+..|.+.|.-
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 11 26899999999999999999999998878888877754
No 140
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.88 E-value=0.053 Score=44.14 Aligned_cols=70 Identities=11% Similarity=0.115 Sum_probs=50.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q 037458 92 NKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNW 170 (196)
Q Consensus 92 ~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~ 170 (196)
+.=|-|-+++..- -..|..+|++||.|++.... ....+-+|.|.++.+|.+||. .||+.|++ ..-|-|.-
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALs-kng~ii~g-~vmiGVkp 266 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALS-KNGTIIDG-DVMIGVKP 266 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhh-hcCeeecc-ceEEeeee
Confidence 3445555777653 35678899999999876543 223699999999999999996 59998873 33344443
No 141
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.61 E-value=0.029 Score=42.95 Aligned_cols=62 Identities=11% Similarity=0.088 Sum_probs=44.2
Q ss_pred CHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhC--CCCCCCCCccEEEEeccCC
Q 037458 105 DENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYT--SILMPNTDQPFRLNWATFS 174 (196)
Q Consensus 105 te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~--g~~~~~~~~~i~v~~a~~~ 174 (196)
..+.|+++|..++.+..+.+++.- +-..|.|.+.++|.+|...|+ +..+. |..+++.|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~--g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFN--GKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEET--TEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccC--CCceEEEEcccc
Confidence 457899999999998888776653 568899999999999999988 77774 688999998543
No 142
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.49 E-value=0.01 Score=50.85 Aligned_cols=73 Identities=22% Similarity=0.224 Sum_probs=56.0
Q ss_pred CEEEEcCCCCCC-CHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEec
Q 037458 93 KTIWVGDLHHWM-DENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWA 171 (196)
Q Consensus 93 ~~lfVgnLp~~~-te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~a 171 (196)
+.|-+.-++... +.++|...|..||+|..|.+-... -.|.|+|.+..+|-+|.. .++..|+ ++.|+|-|-
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~-s~~avln--nr~iKl~wh 443 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYA-SHGAVLN--NRFIKLFWH 443 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhc-cccceec--CceeEEEEe
Confidence 344444445543 567899999999999999885442 478999999999977764 6888996 599999998
Q ss_pred cCC
Q 037458 172 TFS 174 (196)
Q Consensus 172 ~~~ 174 (196)
..+
T Consensus 444 nps 446 (526)
T KOG2135|consen 444 NPS 446 (526)
T ss_pred cCC
Confidence 764
No 143
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=95.45 E-value=0.063 Score=33.95 Aligned_cols=49 Identities=10% Similarity=0.180 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCC
Q 037458 103 WMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMP 160 (196)
Q Consensus 103 ~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~ 160 (196)
.++-++|+..+..|+- .+|..|+. || ||.|.+.++|+++....+|..+-
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~t-----Gf-YIvF~~~~Ea~rC~~~~~~~~~f 59 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDRT-----GF-YIVFNDSKEAERCFRAEDGTLFF 59 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecCC-----EE-EEEECChHHHHHHHHhcCCCEEE
Confidence 4677899999999853 23344432 44 89999999999999998888774
No 144
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.14 E-value=0.069 Score=46.88 Aligned_cols=58 Identities=9% Similarity=0.161 Sum_probs=48.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHh--cCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFAS--TGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYT 155 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~~--~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~ 155 (196)
..+.|.|+.|+..+-.|+++.+|.. |-++.+|.+-.+. -=||+|++..+|..|.+.|.
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylr 233 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLR 233 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHH
Confidence 4567889999999999999999975 7889999886653 34999999999999976543
No 145
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.01 E-value=0.12 Score=44.21 Aligned_cols=67 Identities=15% Similarity=0.231 Sum_probs=56.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcC-CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCC
Q 037458 92 NKTIWVGDLHHWMDENYLHSCFASTG-EIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMP 160 (196)
Q Consensus 92 ~~~lfVgnLp~~~te~~l~~~F~~~G-~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~ 160 (196)
.+.|+|-.+|..++-.+|..|+..|- .|.++++++|.. ..+=..+|.|.+.++|......+||..+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 78899999999999999998887764 689999999742 22335789999999999999999999886
No 146
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=94.39 E-value=0.026 Score=44.88 Aligned_cols=104 Identities=16% Similarity=0.146 Sum_probs=72.7
Q ss_pred CCCCCEEEEcCCCCCCCHHH-H--HHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCcc
Q 037458 89 GGENKTIWVGDLHHWMDENY-L--HSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQP 165 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~~te~~-l--~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~ 165 (196)
......+|++++-..+..+- | ...|+.+-.+...++++++. +..++++|+.|.......++-..-+++.+. ...
T Consensus 93 ~P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p-~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~--~~~ 169 (290)
T KOG0226|consen 93 APAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRP-QPIRPEAFESFKASDALLKAETEKEKKKIG--KPP 169 (290)
T ss_pred CcccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCC-CccCcccccCcchhhhhhhhcccccccccc--Ccc
Confidence 34556778888777766554 3 67788888888888888764 778899999999888777777666777773 455
Q ss_pred EEEEeccCCCC-CCCCCCCCCceEEecCCCC
Q 037458 166 FRLNWATFSTG-DKRSDNGPDLSIFVGDLAA 195 (196)
Q Consensus 166 i~v~~a~~~~~-~~~~~~~~~~~ifV~nL~~ 195 (196)
||+.-+..... ....-...+++||.|+|.-
T Consensus 170 VR~a~gtswedPsl~ew~~~DfRIfcgdlgN 200 (290)
T KOG0226|consen 170 VRLAAGTSWEDPSLAEWDEDDFRIFCGDLGN 200 (290)
T ss_pred eeeccccccCCcccccCccccceeecccccc
Confidence 77655443211 1123357889999999873
No 147
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=93.61 E-value=0.3 Score=39.64 Aligned_cols=50 Identities=20% Similarity=0.107 Sum_probs=38.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCe-eEEEEeecCCCCCcccEEEEEEcCHH
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEI-ASIKVIRNKQTGLSEGYGFVEFFTHA 145 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i-~~v~i~~d~~tg~~~g~afV~F~~~~ 145 (196)
....-|||+||+.++.-.+|+..+.+.+.+ .++.|. .+.|-||+.|.+..
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk------g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK------GHFGKCFLHFGNRK 378 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcCCCceeEeee------cCCcceeEecCCcc
Confidence 344559999999999999999999887754 555552 24578999997654
No 148
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=92.63 E-value=0.59 Score=39.82 Aligned_cols=88 Identities=18% Similarity=0.271 Sum_probs=63.3
Q ss_pred CCCCCCCCCEEEEcCCCCC-CCHHHHHHHHHhc----CCeeEEEEeecC-------------------------------
Q 037458 85 QGSGGGENKTIWVGDLHHW-MDENYLHSCFAST----GEIASIKVIRNK------------------------------- 128 (196)
Q Consensus 85 ~~~~~~~~~~lfVgnLp~~-~te~~l~~~F~~~----G~i~~v~i~~d~------------------------------- 128 (196)
.+++.....+|-|-||.|+ +...+|..+|+.| |.|..|.|....
T Consensus 139 ~pe~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~ 218 (622)
T COG5638 139 VPEEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKF 218 (622)
T ss_pred ccCCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhcc
Confidence 3455677889999999997 7778899888876 566666543211
Q ss_pred ---------CCC------Cc-------------------ccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEecc
Q 037458 129 ---------QTG------LS-------------------EGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWAT 172 (196)
Q Consensus 129 ---------~tg------~~-------------------~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~a~ 172 (196)
.-| .- .=||.|+|.+.+.+......++|.++.+....+.+.|.-
T Consensus 219 ~~dn~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvP 296 (622)
T COG5638 219 GDDNVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVP 296 (622)
T ss_pred CCccchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeecC
Confidence 000 00 126889999999999999999999988777777776654
No 149
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=91.64 E-value=0.062 Score=43.37 Aligned_cols=84 Identities=17% Similarity=0.364 Sum_probs=50.8
Q ss_pred CCCCEEEEcCCCCCC------------CHHHHHHHHHhcCCeeEEEEee-c----CCCCCcc-----cEEE---------
Q 037458 90 GENKTIWVGDLHHWM------------DENYLHSCFASTGEIASIKVIR-N----KQTGLSE-----GYGF--------- 138 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~------------te~~l~~~F~~~G~i~~v~i~~-d----~~tg~~~-----g~af--------- 138 (196)
+...|||+.+||..| +++.|+..|+.||+|..|.|.. | .-+|+.. ||+|
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeay 226 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAY 226 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHH
Confidence 455688888887533 5778999999999998887632 2 2334433 3433
Q ss_pred EEEcCHHHHHHHHHHhCCCCCCC--C----CccEEEEeccC
Q 037458 139 VEFFTHATAEKVLQSYTSILMPN--T----DQPFRLNWATF 173 (196)
Q Consensus 139 V~F~~~~~A~~al~~l~g~~~~~--~----~~~i~v~~a~~ 173 (196)
|.|........|+.+|.|..+-- . ...|+|+|.++
T Consensus 227 vqfmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrs 267 (445)
T KOG2891|consen 227 VQFMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRS 267 (445)
T ss_pred HHHHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchh
Confidence 34444444556666676654421 1 13467777654
No 150
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.86 E-value=1.5 Score=37.27 Aligned_cols=56 Identities=14% Similarity=0.099 Sum_probs=46.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCC-eeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHH
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFASTGE-IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQS 153 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~~~G~-i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~ 153 (196)
-...|=|.+++.....++|...|+.|+. -.+|+|+.|. .+|..|.+...|..||..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 3467888899999888899999999974 4678888874 899999999999999853
No 151
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=87.91 E-value=0.11 Score=43.77 Aligned_cols=66 Identities=12% Similarity=-0.022 Sum_probs=52.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCC
Q 037458 89 GGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILM 159 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~ 159 (196)
.+..++|+|++|...+...++.++|..+|+|....+-. +....+|-|+|........|+. .+|.++
T Consensus 148 eeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr-~~gre~ 213 (479)
T KOG4676|consen 148 EEIRRTREVQSLISAAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALR-SHGRER 213 (479)
T ss_pred HHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHH-hcchhh
Confidence 34568999999999999999999999999998776643 3334578899998888888886 466555
No 152
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=87.50 E-value=1.9 Score=35.17 Aligned_cols=86 Identities=12% Similarity=0.221 Sum_probs=58.8
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecC-------CCCCcccEEEEEEcCHHHHHHHH----HHhC
Q 037458 87 SGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNK-------QTGLSEGYGFVEFFTHATAEKVL----QSYT 155 (196)
Q Consensus 87 ~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~-------~tg~~~g~afV~F~~~~~A~~al----~~l~ 155 (196)
...-..|.|.+.||..+++-..+...|-+||.|++|.++.+. ...+......+.|-+++.+.... ..|.
T Consensus 10 dD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLs 89 (309)
T PF10567_consen 10 DDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLS 89 (309)
T ss_pred CccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHH
Confidence 344557789999999999988888999999999999999875 11233457788999888776543 2333
Q ss_pred CCCCCCCCccEEEEecc
Q 037458 156 SILMPNTDQPFRLNWAT 172 (196)
Q Consensus 156 g~~~~~~~~~i~v~~a~ 172 (196)
..+-......+++.|..
T Consensus 90 EfK~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 90 EFKTKLKSESLTLSFVS 106 (309)
T ss_pred HHHHhcCCcceeEEEEE
Confidence 32211134556666654
No 153
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=87.44 E-value=0.13 Score=40.20 Aligned_cols=72 Identities=21% Similarity=0.455 Sum_probs=59.5
Q ss_pred CCCCCCCEEEEcC----CCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCC
Q 037458 87 SGGGENKTIWVGD----LHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILM 159 (196)
Q Consensus 87 ~~~~~~~~lfVgn----Lp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~ 159 (196)
.+.+..++++.|+ |...++++.+.+.|+.-|.+..+++.++.. |+.+.++|+++.-....-.++..+.+..+
T Consensus 75 ~~~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 75 EEDEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDLYQGLEL 150 (267)
T ss_pred ccchhhcccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhhhcccCc
Confidence 3445668889998 888999999999999999999999988864 88899999999877777777777666554
No 154
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=86.19 E-value=0.75 Score=32.48 Aligned_cols=46 Identities=20% Similarity=0.286 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcC-HHHHHHHHH
Q 037458 104 MDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFT-HATAEKVLQ 152 (196)
Q Consensus 104 ~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~-~~~A~~al~ 152 (196)
++.++|++.|+.|..++ ++.+.++ ..+.|+++|+|.+ ......|++
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 35578999999998875 5555664 3677999999974 444444543
No 155
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=85.81 E-value=1.9 Score=27.40 Aligned_cols=62 Identities=13% Similarity=0.183 Sum_probs=43.2
Q ss_pred HHHHHHHHhcC-CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEeccC
Q 037458 107 NYLHSCFASTG-EIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWATF 173 (196)
Q Consensus 107 ~~l~~~F~~~G-~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~a~~ 173 (196)
++|++-|...| .|.++.-+..+.++.....-||++....+... .|+=..+ ++..|+|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l--~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTL--CGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhh--CCeEEEEecCCC
Confidence 46788888888 68888888887667777788998876544332 2344445 357788887664
No 156
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=85.45 E-value=4.5 Score=33.99 Aligned_cols=27 Identities=15% Similarity=0.094 Sum_probs=16.6
Q ss_pred EcCCCCCCCHHHHHHHHHhcCCeeEEE
Q 037458 97 VGDLHHWMDENYLHSCFASTGEIASIK 123 (196)
Q Consensus 97 VgnLp~~~te~~l~~~F~~~G~i~~v~ 123 (196)
|+--..-++|.+++++..+--.|.+-.
T Consensus 350 ~~p~~~plSeAEFEdiM~RNraiSSSA 376 (498)
T KOG4849|consen 350 VNPQMFPLSEAEFEDIMTRNRAISSSA 376 (498)
T ss_pred CCCCCccchHHHHHHHHhhcchhhHHH
Confidence 333344578888888887755554433
No 157
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=79.24 E-value=0.25 Score=43.50 Aligned_cols=70 Identities=7% Similarity=0.008 Sum_probs=53.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCC
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMP 160 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~ 160 (196)
..++|||.|+.++++-++|..+++.+-.+..+.+..+..-.....+++|+|.--.....|+.+||+..+.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 3467999999999999999999998877776665444322344568899998777777777888887774
No 158
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=79.03 E-value=2.4 Score=32.22 Aligned_cols=76 Identities=16% Similarity=0.152 Sum_probs=51.3
Q ss_pred CCEEEEcCCCCCCCH-----HHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 92 NKTIWVGDLHHWMDE-----NYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 92 ~~~lfVgnLp~~~te-----~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
..++++-+|...+-. ....++|..|.+.....+++. .++.-|.|.+.+.|..|...+++..+.+ +..+
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~-~~~~ 82 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNG-KNEL 82 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCC-CceE
Confidence 345667777665322 234456666655554444443 2567789999999999999999999974 4478
Q ss_pred EEEeccCC
Q 037458 167 RLNWATFS 174 (196)
Q Consensus 167 ~v~~a~~~ 174 (196)
+.-++...
T Consensus 83 k~yfaQ~~ 90 (193)
T KOG4019|consen 83 KLYFAQPG 90 (193)
T ss_pred EEEEccCC
Confidence 88887754
No 159
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=78.73 E-value=4.4 Score=25.75 Aligned_cols=61 Identities=13% Similarity=0.132 Sum_probs=42.1
Q ss_pred HHHHHHHHhcC-CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEecc
Q 037458 107 NYLHSCFASTG-EIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWAT 172 (196)
Q Consensus 107 ~~l~~~F~~~G-~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~a~ 172 (196)
++|++-|...| .++.+..+..+.++.....-||+.....+... .|+-..| +++.|.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~L--g~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTL--GGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhh--CCeeEEEecCc
Confidence 46788888888 68888888887777666778888875533332 3444555 35778888654
No 160
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=75.89 E-value=4.7 Score=26.96 Aligned_cols=58 Identities=16% Similarity=0.217 Sum_probs=32.4
Q ss_pred EEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEec--cCCCCCCC--CCCCCCceEEecCCCC
Q 037458 137 GFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWA--TFSTGDKR--SDNGPDLSIFVGDLAA 195 (196)
Q Consensus 137 afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~a--~~~~~~~~--~~~~~~~~ifV~nL~~ 195 (196)
|+|+|.+..-|.+.++ +..+.+...+..++|.-. ......+- ...-..++|.|.|||.
T Consensus 1 AlITF~e~~VA~~i~~-~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~ 62 (88)
T PF07292_consen 1 ALITFEEEGVAQRILK-KKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPD 62 (88)
T ss_pred CEEEeCcHHHHHHHHh-CCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCC
Confidence 6899999999999886 344444322334443321 11110000 1234566899999985
No 161
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=74.77 E-value=5.3 Score=30.89 Aligned_cols=59 Identities=20% Similarity=0.236 Sum_probs=41.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHH
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHAT 146 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~ 146 (196)
.......+++++++..++...+...|..+|.+....+...........+.++.+.....
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (306)
T COG0724 221 LLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKD 279 (306)
T ss_pred cccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHh
Confidence 44567889999999999999999999999999777766554333333344444333333
No 162
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=67.75 E-value=0.27 Score=42.01 Aligned_cols=75 Identities=12% Similarity=0.240 Sum_probs=59.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEee-cCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEE
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIR-NKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLN 169 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~-d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~ 169 (196)
..+++-|.||+....++.|..++..||.+..|..+. |..| -..-|+|.+.+.+..||..|+|..+.+ ..+++.
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et----avvnvty~~~~~~~~ai~kl~g~Q~en--~~~k~~ 152 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET----AVVNVTYSAQQQHRQAIHKLNGPQLEN--QHLKVG 152 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH----HHHHHHHHHHHHHHHHHHhhcchHhhh--hhhhcc
Confidence 356689999999999999999999999999887632 3221 234578889999999999999998864 566666
Q ss_pred ec
Q 037458 170 WA 171 (196)
Q Consensus 170 ~a 171 (196)
|-
T Consensus 153 Yi 154 (584)
T KOG2193|consen 153 YI 154 (584)
T ss_pred cC
Confidence 64
No 163
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=67.04 E-value=33 Score=22.67 Aligned_cols=56 Identities=7% Similarity=0.098 Sum_probs=39.3
Q ss_pred EEEcCCCCCCCHHHHHHHHHh-cC-CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHH
Q 037458 95 IWVGDLHHWMDENYLHSCFAS-TG-EIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQS 153 (196)
Q Consensus 95 lfVgnLp~~~te~~l~~~F~~-~G-~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~ 153 (196)
-|+-.++.+.+..+|++.++. || .|.+|..+.-+. ...=|||.+....+|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHHh
Confidence 344457788999999999987 45 567777665431 224599999888887776543
No 164
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=66.95 E-value=5.8 Score=31.47 Aligned_cols=36 Identities=14% Similarity=0.284 Sum_probs=30.3
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEE
Q 037458 87 SGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASI 122 (196)
Q Consensus 87 ~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v 122 (196)
......++||+-|||..+|++.|.++.+.+|-+..+
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 355678899999999999999999999999855443
No 165
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=66.43 E-value=15 Score=24.39 Aligned_cols=49 Identities=14% Similarity=0.287 Sum_probs=32.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEc
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFF 142 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~ 142 (196)
...-||||+++..+-|.-...+.+..+.-.-+-+..+. . ..||.|-++.
T Consensus 24 i~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~--n-eqG~~~~t~G 72 (86)
T PF09707_consen 24 IRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDN--N-EQGFDFRTLG 72 (86)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccC--C-CCCEEEEEeC
Confidence 45569999999988877666666655554444444432 2 5689988773
No 166
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=65.61 E-value=18 Score=22.43 Aligned_cols=18 Identities=33% Similarity=0.492 Sum_probs=15.2
Q ss_pred HHHHHHHHhcCCeeEEEE
Q 037458 107 NYLHSCFASTGEIASIKV 124 (196)
Q Consensus 107 ~~l~~~F~~~G~i~~v~i 124 (196)
.+||++|+..|.|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999976655
No 167
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=63.72 E-value=33 Score=24.29 Aligned_cols=46 Identities=13% Similarity=0.188 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHhc-C---C-eeEEEEeecCCCCCcccEEEEEEcCHHHHHH
Q 037458 103 WMDENYLHSCFAST-G---E-IASIKVIRNKQTGLSEGYGFVEFFTHATAEK 149 (196)
Q Consensus 103 ~~te~~l~~~F~~~-G---~-i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~ 149 (196)
+++.+||++-+++. - . |.-..+...-.+|++.|||.| |++.+.|.+
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 46788888877653 2 2 222233334456788889977 566655543
No 168
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=62.26 E-value=40 Score=21.86 Aligned_cols=55 Identities=7% Similarity=0.100 Sum_probs=38.5
Q ss_pred EEEcCCCCCCCHHHHHHHHHh-cC-CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHH
Q 037458 95 IWVGDLHHWMDENYLHSCFAS-TG-EIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQ 152 (196)
Q Consensus 95 lfVgnLp~~~te~~l~~~F~~-~G-~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~ 152 (196)
-|+-.++.+.+..+|++.++. || .|.+|..+.-+. ...=|||++..-+.|...-.
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHH
Confidence 455567889999999999987 45 566776655431 22359999987777766544
No 169
>PRK10905 cell division protein DamX; Validated
Probab=60.40 E-value=39 Score=28.18 Aligned_cols=61 Identities=10% Similarity=0.110 Sum_probs=37.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccE--EEEEEcCHHHHHHHHHHhCC
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGY--GFVEFFTHATAEKVLQSYTS 156 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~--afV~F~~~~~A~~al~~l~g 156 (196)
..++|-|+.+. +++.|++|..+.|. ....+......|+. -| -+=.|.++++|++|+..|-.
T Consensus 246 ~~YTLQL~A~S---s~~~l~~fakKlgL-~~y~vy~TtRnGkp-WYVV~yG~YaSraeAk~AiakLPa 308 (328)
T PRK10905 246 SHYTLQLSSSS---NYDNLNGWAKKENL-KNYVVYETTRNGQP-WYVLVSGVYASKEEAKRAVSTLPA 308 (328)
T ss_pred CceEEEEEecC---CHHHHHHHHHHcCC-CceEEEEeccCCce-EEEEEecCCCCHHHHHHHHHHCCH
Confidence 45666666554 56778888887753 33334433323332 23 23378899999999998754
No 170
>PF14893 PNMA: PNMA
Probab=59.87 E-value=16 Score=30.61 Aligned_cols=76 Identities=12% Similarity=0.230 Sum_probs=43.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHh----cCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCcc
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFAS----TGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQP 165 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~----~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~ 165 (196)
+..+.|.|.+||.+|++++|.+.+.. .|...-+.-+..+.. ...-++|+|...-+-. +-=..|.++|..
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~--~~~aalve~~e~~n~~-----~iP~~i~g~gg~ 88 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREE--NAKAALVEFAEDVNYS-----LIPREIPGKGGP 88 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhc--ccceeeeecccccchh-----hCchhcCCCCCc
Confidence 45677999999999999999888765 343221111111111 1346888886432211 122344556677
Q ss_pred EEEEecc
Q 037458 166 FRLNWAT 172 (196)
Q Consensus 166 i~v~~a~ 172 (196)
.+|-+-.
T Consensus 89 W~Vv~~p 95 (331)
T PF14893_consen 89 WRVVFKP 95 (331)
T ss_pred eEEEecC
Confidence 7766543
No 171
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=59.46 E-value=36 Score=20.32 Aligned_cols=54 Identities=11% Similarity=0.009 Sum_probs=39.1
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCH----HHHHHHHHH
Q 037458 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTH----ATAEKVLQS 153 (196)
Q Consensus 94 ~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~----~~A~~al~~ 153 (196)
|+.|.||.-.--...|++.+...-.|.++.+-... +-+-|+|... +...++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~------~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET------KTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC------CEEEEEEecCCCCHHHHHHHHHH
Confidence 56777787666677899999999999998885543 5778888743 455555554
No 172
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=58.55 E-value=20 Score=24.47 Aligned_cols=50 Identities=16% Similarity=0.225 Sum_probs=31.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcC
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFT 143 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~ 143 (196)
...-||||+++..+-|.....+-+.++.-.-+-+..+ ....||.|-++.+
T Consensus 26 v~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~---~~eqG~~~~t~G~ 75 (97)
T PRK11558 26 VRAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWAT---NTESGFEFQTFGE 75 (97)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcC---CCCCCcEEEecCC
Confidence 4556999999888877655555555654333333333 2233899888764
No 173
>PRK11901 hypothetical protein; Reviewed
Probab=56.79 E-value=46 Score=27.83 Aligned_cols=63 Identities=13% Similarity=0.206 Sum_probs=40.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEE--EEEcCHHHHHHHHHHhCCC
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGF--VEFFTHATAEKVLQSYTSI 157 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~af--V~F~~~~~A~~al~~l~g~ 157 (196)
....+|=|..+ ..++.|..|..+.+ +..+.+.+....|+. -|.. -+|.+.++|.+|+..|-..
T Consensus 243 ~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 243 ASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred CCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCHH
Confidence 44566666554 35778888888775 455555554333332 2433 3788999999999887653
No 174
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=55.63 E-value=42 Score=22.93 Aligned_cols=46 Identities=24% Similarity=0.278 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHh-cCCeeEEEEeecCCC----CCcccEEEEEEcCHHHHHH
Q 037458 103 WMDENYLHSCFAS-TGEIASIKVIRNKQT----GLSEGYGFVEFFTHATAEK 149 (196)
Q Consensus 103 ~~te~~l~~~F~~-~G~i~~v~i~~d~~t----g~~~g~afV~F~~~~~A~~ 149 (196)
+.+..+|++.+.. |+.=.+..++..-.| |++.|||.| |++.+.|.+
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 4567788766654 553334444433322 455666655 555555543
No 175
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.78 E-value=85 Score=23.21 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=38.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhc---CCeeEEEEeecCCC---------CCccc-EEEEEEcCHHH
Q 037458 92 NKTIWVGDLHHWMDENYLHSCFAST---GEIASIKVIRNKQT---------GLSEG-YGFVEFFTHAT 146 (196)
Q Consensus 92 ~~~lfVgnLp~~~te~~l~~~F~~~---G~i~~v~i~~d~~t---------g~~~g-~afV~F~~~~~ 146 (196)
..+|++--++..+++++.++..++- +++++|++-+.+++ ...+. |-+|.|++-..
T Consensus 87 ~~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~ 154 (161)
T COG5353 87 DGKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKE 154 (161)
T ss_pred CCeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchh
Confidence 3688888899999999999998875 46677766554321 11223 78888887543
No 176
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=52.09 E-value=7.3 Score=26.05 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=20.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHH
Q 037458 89 GGENKTIWVGDLHHWMDENYLHSC 112 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~~te~~l~~~ 112 (196)
.-..++|-|.||+..+++++|++.
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~ 72 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDK 72 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheee
Confidence 356789999999999999999864
No 177
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=51.43 E-value=59 Score=20.40 Aligned_cols=45 Identities=20% Similarity=0.163 Sum_probs=34.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcC
Q 037458 93 KTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFT 143 (196)
Q Consensus 93 ~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~ 143 (196)
.+++|.++.-.-=...+++.+..-..+.++.+-.+. +-++|+|++
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~------~~~~V~~d~ 48 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEK------GTATVTFDS 48 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEccc------CeEEEEEcC
Confidence 457777776665567788889888889998887664 468999987
No 178
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=49.98 E-value=19 Score=30.57 Aligned_cols=71 Identities=10% Similarity=0.109 Sum_probs=48.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCC-eeEEEEeecCCC--CCcccEEEEEEcCHHHHHHHHHHhCCCCCC
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGE-IASIKVIRNKQT--GLSEGYGFVEFFTHATAEKVLQSYTSILMP 160 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~-i~~v~i~~d~~t--g~~~g~afV~F~~~~~A~~al~~l~g~~~~ 160 (196)
....+|.|.+||...++..|.+-+..+-. +....+.....+ ....+.+||.|...++.....+.++|+.+.
T Consensus 5 ~~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred ccceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 34567889999999999998887777542 222233311111 112467999999999988888888887554
No 179
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=48.75 E-value=7.4 Score=33.28 Aligned_cols=61 Identities=18% Similarity=0.153 Sum_probs=48.0
Q ss_pred CCEEEEcCCCCCCCHH--------HHHHHHHh--cCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHH
Q 037458 92 NKTIWVGDLHHWMDEN--------YLHSCFAS--TGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQ 152 (196)
Q Consensus 92 ~~~lfVgnLp~~~te~--------~l~~~F~~--~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~ 152 (196)
.+.+|+.++....+.+ ++...|.. .+.+..++..+|.....++|-.|++|.....+.+.+.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 4567777776665544 88888888 6778888888887677888999999999999998763
No 180
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=47.45 E-value=1.7e+02 Score=24.64 Aligned_cols=76 Identities=13% Similarity=0.249 Sum_probs=43.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHH-----------HhcC-CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCC
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCF-----------ASTG-EIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSI 157 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F-----------~~~G-~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~ 157 (196)
...+.|.|| |.+--|.++|+-+. ++|| +..+|.++.|-.+ -.+.--+..-..+|+..|-..
T Consensus 62 gkrrAvLiG-INY~gTk~ELrGCINDv~~M~~~Lv~rfGFs~ddI~~LtDt~~------s~~~~PT~~Nir~Al~wLV~~ 134 (362)
T KOG1546|consen 62 GKRRAVLIG-INYPGTKNELRGCINDVHRMRKLLVERFGFSEDDILMLTDTDE------SPVRIPTGKNIRRALRWLVES 134 (362)
T ss_pred ccceEEEEe-ecCCCcHHHHhhhHHHHHHHHHHHHHhhCCChhheEEEecCCC------cccccCcHHHHHHHHHHHHhc
Confidence 344556665 77777777776433 4677 4567777776432 123344555666676665433
Q ss_pred CCCCCCccEEEEeccCC
Q 037458 158 LMPNTDQPFRLNWATFS 174 (196)
Q Consensus 158 ~~~~~~~~i~v~~a~~~ 174 (196)
-- .|-.|.+.|+-.+
T Consensus 135 aq--~gD~LvfHYSGHG 149 (362)
T KOG1546|consen 135 AQ--PGDSLVFHYSGHG 149 (362)
T ss_pred CC--CCCEEEEEecCCC
Confidence 22 2456777776543
No 181
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=45.10 E-value=29 Score=22.72 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=20.3
Q ss_pred CcccEEEEEEcCHHHHHHHHHHhCC
Q 037458 132 LSEGYGFVEFFTHATAEKVLQSYTS 156 (196)
Q Consensus 132 ~~~g~afV~F~~~~~A~~al~~l~g 156 (196)
..+||-|||=.+..++..|++.+.+
T Consensus 42 ~lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 42 SLKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp TSTSEEEEEESSHHHHHHHHTT-TT
T ss_pred CCceEEEEEeCCHHHHHHHHhcccc
Confidence 3679999999999999999876544
No 182
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=44.45 E-value=47 Score=22.15 Aligned_cols=50 Identities=10% Similarity=0.126 Sum_probs=28.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHh-cCCeeEEEEeecCCCCCcccEEEEEEcC
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFAS-TGEIASIKVIRNKQTGLSEGYGFVEFFT 143 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~~-~G~i~~v~i~~d~~tg~~~g~afV~F~~ 143 (196)
...-||||+++..+-|.....+-+. .++-.-+-+..+ ....||.|-++.+
T Consensus 24 v~~GVyVg~~s~rVRe~lW~~v~~~~~~~G~avm~~~~---~~e~G~~~~t~G~ 74 (87)
T TIGR01873 24 PRAGVYVGGVSASVRERIWDYLAQHCPPKGSLVITWSS---NTCPGFEFFTLGE 74 (87)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCCCccEEEEEeC---CCCCCcEEEecCC
Confidence 4556999999888776544444444 233222222222 2244788877654
No 183
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=44.13 E-value=81 Score=19.86 Aligned_cols=43 Identities=19% Similarity=0.169 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCCeeEEEEeecCCCCCc-ccEEEEEEcCHHHHHHHHHHhC
Q 037458 107 NYLHSCFASTGEIASIKVIRNKQTGLS-EGYGFVEFFTHATAEKVLQSYT 155 (196)
Q Consensus 107 ~~l~~~F~~~G~i~~v~i~~d~~tg~~-~g~afV~F~~~~~A~~al~~l~ 155 (196)
.+|.+.+..+| +....+. |-. .++.|+.+.+.+.++++++.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~s-----GsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMS-----GSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEE-----TTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecC-----CCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 35667777888 4444442 221 3578888888888888877653
No 184
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=43.69 E-value=69 Score=23.14 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHh-cC-CeeEEEEeecC----CCCCcccEEEEEEcCHHHHH
Q 037458 103 WMDENYLHSCFAS-TG-EIASIKVIRNK----QTGLSEGYGFVEFFTHATAE 148 (196)
Q Consensus 103 ~~te~~l~~~F~~-~G-~i~~v~i~~d~----~tg~~~g~afV~F~~~~~A~ 148 (196)
+.+..+|++.+.. |+ .=.++.++..- ..|.+.|||.| |++.+.+.
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~k 85 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALK 85 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHH
Confidence 4677888877765 44 22333333322 23556666665 55555544
No 185
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=43.19 E-value=20 Score=19.70 Aligned_cols=16 Identities=25% Similarity=0.223 Sum_probs=10.3
Q ss_pred CCCCHHHHHHHHHhcC
Q 037458 102 HWMDENYLHSCFASTG 117 (196)
Q Consensus 102 ~~~te~~l~~~F~~~G 117 (196)
.+++++.|+++|.+.+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4678999999998754
No 186
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=41.90 E-value=36 Score=26.02 Aligned_cols=57 Identities=18% Similarity=0.154 Sum_probs=35.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhc-CCeeEEEEeecCCC-CCcccEEEEEEcCHHHHHHHHHH
Q 037458 92 NKTIWVGDLHHWMDENYLHSCFAST-GEIASIKVIRNKQT-GLSEGYGFVEFFTHATAEKVLQS 153 (196)
Q Consensus 92 ~~~lfVgnLp~~~te~~l~~~F~~~-G~i~~v~i~~d~~t-g~~~g~afV~F~~~~~A~~al~~ 153 (196)
.+++|.. .|++.|.++..=- |.+..|...+.... ...+|-.||+|.+.+.|.+++..
T Consensus 111 ~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 111 ERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred Hhhhhcc-----CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 3555554 4555444433211 67777766543221 24578899999999999987754
No 187
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=41.69 E-value=32 Score=21.48 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=23.3
Q ss_pred CHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEE
Q 037458 105 DENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFV 139 (196)
Q Consensus 105 te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV 139 (196)
-+.+|.+.|-.--.|.++.+...|.-++ |-|||
T Consensus 31 ~e~eler~fl~~P~v~e~~l~EKKri~~--G~gyV 63 (64)
T PF13046_consen 31 VEVELERHFLPLPEVKEVALYEKKRIRK--GAGYV 63 (64)
T ss_pred HHHHhhhhccCCCCceEEEEEEEEeeeC--CceeE
Confidence 4557788888888999999887764333 55554
No 188
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=41.18 E-value=1.1e+02 Score=20.38 Aligned_cols=44 Identities=14% Similarity=0.001 Sum_probs=31.2
Q ss_pred HHHHHHHHhcC-CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHh
Q 037458 107 NYLHSCFASTG-EIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSY 154 (196)
Q Consensus 107 ~~l~~~F~~~G-~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l 154 (196)
+.++++++.+| +++++.+... ..-....+++.+.+.|.++.-.+
T Consensus 23 ~a~~~~~e~~Gg~l~~~y~t~G----~yD~v~i~eaPD~~~a~~~~l~i 67 (91)
T PF08734_consen 23 EAVRALIEALGGKLKSFYWTLG----EYDFVVIVEAPDDETAAAASLAI 67 (91)
T ss_pred HHHHHHHHHcCCEEEEEEEecC----CCCEEEEEEcCCHHHHHHHHHHH
Confidence 45777787775 7888888654 33457788999988887765433
No 189
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=40.05 E-value=9.9 Score=24.04 Aligned_cols=26 Identities=8% Similarity=0.194 Sum_probs=18.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHH
Q 037458 89 GGENKTIWVGDLHHWMDENYLHSCFA 114 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~~te~~l~~~F~ 114 (196)
+...+++|||+||..+-++.=..++.
T Consensus 24 s~tSr~vflG~IP~~W~~~~~~~~~k 49 (67)
T PF15407_consen 24 SLTSRRVFLGPIPEIWLQDHRKSWYK 49 (67)
T ss_pred HHcCceEEECCCChHHHHcCcchHHH
Confidence 45689999999999876654444443
No 190
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=39.71 E-value=62 Score=21.37 Aligned_cols=26 Identities=15% Similarity=0.339 Sum_probs=20.0
Q ss_pred CeeEEEEeecCCCCCcccEEEEEEcC
Q 037458 118 EIASIKVIRNKQTGLSEGYGFVEFFT 143 (196)
Q Consensus 118 ~i~~v~i~~d~~tg~~~g~afV~F~~ 143 (196)
+|.+|+|..-...++.++||=|+|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 36677777655558899999999976
No 191
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=39.41 E-value=1.5e+02 Score=22.89 Aligned_cols=61 Identities=15% Similarity=0.142 Sum_probs=36.7
Q ss_pred CHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHh-CCCCCCCCCccEEEE
Q 037458 105 DENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSY-TSILMPNTDQPFRLN 169 (196)
Q Consensus 105 te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l-~g~~~~~~~~~i~v~ 169 (196)
+.++.++++..++.-. +.|..| |...|-+-+...+.++|..+++.+ ....+...+..|-|+
T Consensus 25 ~~~~A~~~l~~~~~p~-~ViKad---Gla~GKGV~i~~~~~eA~~~l~~~~~~~~fg~~~~~vvIE 86 (194)
T PF01071_consen 25 DYEEALEYLEEQGYPY-VVIKAD---GLAAGKGVVIADDREEALEALREIFVDRKFGDAGSKVVIE 86 (194)
T ss_dssp SHHHHHHHHHHHSSSE-EEEEES---SSCTTTSEEEESSHHHHHHHHHHHHTSSTTCCCGSSEEEE
T ss_pred CHHHHHHHHHhcCCCc-eEEccC---CCCCCCEEEEeCCHHHHHHHHHHhccccccCCCCCcEEEE
Confidence 5677778887776433 333334 444444556668999999998775 334554334455443
No 192
>PF14401 RLAN: RimK-like ATPgrasp N-terminal domain
Probab=36.09 E-value=82 Score=23.27 Aligned_cols=60 Identities=10% Similarity=0.053 Sum_probs=39.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcC-CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHH
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFASTG-EIASIKVIRNKQTGLSEGYGFVEFFTHATAEKV 150 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~~~G-~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~a 150 (196)
-..+||.|.-+..--+.--+.+|+.|- .+..+.+.++.....-+....+.+.+..+.++.
T Consensus 86 ~~l~iyFG~~~~~~~~~lAr~lFe~F~~PlL~v~~~~~~~~w~i~~i~~~~~~~l~~~e~~ 146 (153)
T PF14401_consen 86 FELSIYFGQTPDPRLERLARQLFERFPCPLLEVEFVRDDGKWRISSIKPLSLSELSEEEQD 146 (153)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHhCCCceEEEEEEecCCcEEEeeEeecChhhCCHHHHH
Confidence 345788887765555666789999986 678888877753334445555665555444443
No 193
>PRK04199 rpl10e 50S ribosomal protein L10e; Reviewed
Probab=35.93 E-value=1.9e+02 Score=21.88 Aligned_cols=64 Identities=16% Similarity=0.182 Sum_probs=34.7
Q ss_pred CCCCEEEEcCCCCC-CCHHHHHHHHH------h----cCCeeEEEEeecCCCCCcccEEEEEEc----CHHHHHHHHHHh
Q 037458 90 GENKTIWVGDLHHW-MDENYLHSCFA------S----TGEIASIKVIRNKQTGLSEGYGFVEFF----THATAEKVLQSY 154 (196)
Q Consensus 90 ~~~~~lfVgnLp~~-~te~~l~~~F~------~----~G~i~~v~i~~d~~tg~~~g~afV~F~----~~~~A~~al~~l 154 (196)
+.+..|||.-.|.. +|+.-+..... - +|.+..+.....+ |-.+.++. +.+.|..|++ +
T Consensus 79 ~~~~k~wIrvfP~~~lt~kp~~~rmGAdRmg~GMr~akG~p~~wva~Vk~------G~ilfei~~~~~~~~~akeAlr-~ 151 (172)
T PRK04199 79 RSNYHLKIRVYPHHVLRENKMATGAGADRVSDGMRLAFGKPVGTAARVEK------GQKIFTVRVNPEHLEAAKEALR-R 151 (172)
T ss_pred CcccEEEEEeCCCcceecChhHhhcchhhhccCcccCCCCccEEEEEECc------CCEEEEEEecCCCHHHHHHHHH-H
Confidence 34557777766665 34443332222 2 5666554443332 44555555 6677888886 4
Q ss_pred CCCCCC
Q 037458 155 TSILMP 160 (196)
Q Consensus 155 ~g~~~~ 160 (196)
....|.
T Consensus 152 a~~KLP 157 (172)
T PRK04199 152 AAMKLP 157 (172)
T ss_pred hhccCC
Confidence 555665
No 194
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=35.87 E-value=36 Score=28.02 Aligned_cols=21 Identities=33% Similarity=0.382 Sum_probs=17.5
Q ss_pred EEEEEcCHHHHHHHHHHhCCC
Q 037458 137 GFVEFFTHATAEKVLQSYTSI 157 (196)
Q Consensus 137 afV~F~~~~~A~~al~~l~g~ 157 (196)
|||+|++..+|..|++.+...
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~ 21 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK 21 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC
Confidence 799999999999998865443
No 195
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=34.98 E-value=1.8e+02 Score=21.40 Aligned_cols=53 Identities=6% Similarity=0.098 Sum_probs=33.8
Q ss_pred EEEcCCCCCCCHHHHHHHHHh-cC-CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHH
Q 037458 95 IWVGDLHHWMDENYLHSCFAS-TG-EIASIKVIRNKQTGLSEGYGFVEFFTHATAEKV 150 (196)
Q Consensus 95 lfVgnLp~~~te~~l~~~F~~-~G-~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~a 150 (196)
.|+-.++...+..+|++.++. |+ .|..|..+.-+. ...=|||.+....+|...
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~---g~KKA~V~L~~~~~aidv 138 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD---GLKKAYIRLSPDVDALDV 138 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC---CceEEEEEECCCCcHHHH
Confidence 334446778899999988887 44 456666554432 123589999766554433
No 196
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=34.54 E-value=1e+02 Score=27.37 Aligned_cols=56 Identities=14% Similarity=0.209 Sum_probs=39.4
Q ss_pred EEcCCCCCC---CHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCC
Q 037458 96 WVGDLHHWM---DENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPN 161 (196)
Q Consensus 96 fVgnLp~~~---te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~ 161 (196)
+||||..-. ....+.++=.+||.|-.+++-. .-.|...+.+.|+.|+.. ++..+.+
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~---------~~~Vviss~~~akE~l~~-~d~~fa~ 94 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS---------VPVVVISSYEAAKEVLVK-QDLEFAD 94 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC---------ceEEEECCHHHHHHHHHh-CCccccC
Confidence 467765432 3355667777899999887722 237888899999999975 7777753
No 197
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=34.35 E-value=1.4e+02 Score=19.77 Aligned_cols=65 Identities=9% Similarity=0.118 Sum_probs=38.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEc--CHHHHHHHHHHhCCCC
Q 037458 92 NKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFF--THATAEKVLQSYTSIL 158 (196)
Q Consensus 92 ~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~--~~~~A~~al~~l~g~~ 158 (196)
...+|.-.+|..- -.|++++..++.-.+|....-+.++...+.+||-|. +.++.+..++.|....
T Consensus 9 ~E~~~~v~~PE~p--Gal~~F~~~l~~~~nITeF~YR~~~~~~a~vlvgi~v~~~~~~~~l~~~L~~~g 75 (91)
T PF00585_consen 9 REALFAVEFPERP--GALKRFLDALGPRNNITEFHYRYSGDDFARVLVGIEVPDAEDLEELIERLKALG 75 (91)
T ss_dssp -EEEEEEE--BST--THCHHHHHCCSSSE-EEEEEEE-TTTSCSEEEEEEE-SSTHHHHHHHHHHTSSS
T ss_pred CEEEEEEECCCCc--cHHHHHHHHhCCCceEEEEEEcCCCCCeeeEEEEEEeCCHHHHHHHHHHHHHcC
Confidence 3445555666643 367888888887665655554556667788888775 4455566677776543
No 198
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=33.94 E-value=2.3e+02 Score=25.25 Aligned_cols=63 Identities=11% Similarity=0.003 Sum_probs=39.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHHH----hcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCC
Q 037458 93 KTIWVGDLHHWMDENYLHSCFA----STGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTS 156 (196)
Q Consensus 93 ~~lfVgnLp~~~te~~l~~~F~----~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g 156 (196)
..+.++.-..+.+..+|..+|. .+|-|.++.+...+.. ..+...++.|.+.++|..++..+..
T Consensus 190 ~i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p-~~~~~~~~~f~~~~~a~~~~~~~~~ 256 (499)
T PRK11230 190 EALTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPKP-PVARVLLASFDSVEKAGLAVGDIIA 256 (499)
T ss_pred cEEEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEcCC-cceEEEEEECCCHHHHHHHHHHHHh
Confidence 3444443222223346666664 4667777777665432 3345678899999999998877654
No 199
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=33.92 E-value=81 Score=21.35 Aligned_cols=50 Identities=8% Similarity=0.101 Sum_probs=29.2
Q ss_pred CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEeccCC
Q 037458 118 EIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWATFS 174 (196)
Q Consensus 118 ~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~a~~~ 174 (196)
+|.+|++..-...|+.++||-|+|.+.- .+++..+-.+.+-+-|..-+..
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd~f-------vI~~ikVieg~~GlFVaMPs~k 51 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDNEF-------VVHDIRVIEGNNGLFIAMPSKR 51 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECCEE-------EEeeeEEEECCCCeEEECcCcC
Confidence 3667776554445888999999998731 1344333222344666665433
No 200
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=33.63 E-value=51 Score=32.68 Aligned_cols=38 Identities=18% Similarity=0.167 Sum_probs=28.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecC
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNK 128 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~ 128 (196)
..++++|--+-..+..+.|+++.+.|+...++....|+
T Consensus 71 kak~~~v~t~ka~~PpeHLrki~~~~sdm~s~~~~~Dk 108 (2365)
T COG5178 71 KAKTLHVLTLKAPIPPEHLRKIQSPCSDMPSVLTKVDK 108 (2365)
T ss_pred hhhheeeeccCCCCCHHHHHhhhCccccchhhhhhhhh
Confidence 45677777777788889999999999877666554443
No 201
>COG0217 Uncharacterized conserved protein [Function unknown]
Probab=33.33 E-value=2.5e+02 Score=22.47 Aligned_cols=38 Identities=18% Similarity=0.227 Sum_probs=27.8
Q ss_pred CCCEEEEcCCCCC--CCHHHHHHHHHhcCCe----eEEEEeecC
Q 037458 91 ENKTIWVGDLHHW--MDENYLHSCFASTGEI----ASIKVIRNK 128 (196)
Q Consensus 91 ~~~~lfVgnLp~~--~te~~l~~~F~~~G~i----~~v~i~~d~ 128 (196)
...-|.|-.|..+ -|-.+||..|.++|.- -+|.++.++
T Consensus 93 ~GvaiiVe~LTDN~NRTas~vR~~F~K~GG~lg~~GSV~~mF~~ 136 (241)
T COG0217 93 GGVAIIVEALTDNRNRTASNVRSAFNKNGGNLGEPGSVSYMFDR 136 (241)
T ss_pred CceEEEEEeccCCcchhHHHHHHHHHhcCCccCCCceEEEEEec
Confidence 3456778778665 4668999999998742 368888875
No 202
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=33.02 E-value=3.3e+02 Score=25.06 Aligned_cols=69 Identities=16% Similarity=0.276 Sum_probs=47.1
Q ss_pred CEEEEc-CCCCCCCHHHHHHHHHhcCCe-----eEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 93 KTIWVG-DLHHWMDENYLHSCFASTGEI-----ASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 93 ~~lfVg-nLp~~~te~~l~~~F~~~G~i-----~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
.++||. +-...++..+|..++..-+.| -.|+|.. .|.||+... +.|...+..|++..+ +++.|
T Consensus 487 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~--------~~s~v~~~~-~~~~~~~~~~~~~~~--~~~~~ 555 (629)
T PRK11634 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFA--------SHSTIELPK-GMPGEVLQHFTRTRI--LNKPM 555 (629)
T ss_pred EEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeC--------CceEEEcCh-hhHHHHHHHhccccc--cCCce
Confidence 345553 223457888888888776654 3444433 489999864 567888899998888 46888
Q ss_pred EEEecc
Q 037458 167 RLNWAT 172 (196)
Q Consensus 167 ~v~~a~ 172 (196)
.|+.++
T Consensus 556 ~~~~~~ 561 (629)
T PRK11634 556 NMQLLG 561 (629)
T ss_pred EEEECC
Confidence 888764
No 203
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=32.13 E-value=2.2e+02 Score=22.76 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=29.5
Q ss_pred CCEEEEcCCCCC--CCHHHHHHHHHhcCCe----eEEEEeecCCCCCcccEEEEEEc
Q 037458 92 NKTIWVGDLHHW--MDENYLHSCFASTGEI----ASIKVIRNKQTGLSEGYGFVEFF 142 (196)
Q Consensus 92 ~~~lfVgnLp~~--~te~~l~~~F~~~G~i----~~v~i~~d~~tg~~~g~afV~F~ 142 (196)
...|.|--|..+ -|..+|+.+|+++|.- -+|.++.++ .|.|+|.
T Consensus 94 GvaiiVe~lTDN~nRt~~~ir~~f~K~gg~l~~~gsv~~~Fe~-------kG~i~~~ 143 (238)
T TIGR01033 94 GVAIIVECLTDNKNRTASEVRSAFNKNGGSLGEPGSVSYLFSR-------KGVIEVP 143 (238)
T ss_pred ceEEEEEEecCCHHhHHHHHHHHHHHcCCeeCCCCceeeeeec-------ceEEEEC
Confidence 345566666555 3567999999998753 246777774 5677774
No 204
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=32.11 E-value=97 Score=20.88 Aligned_cols=48 Identities=15% Similarity=0.180 Sum_probs=26.3
Q ss_pred EEEEcCCCCCCCHHHHH---HHHHhcCCeeEEEE--eecCCCCCcccEEEEEE
Q 037458 94 TIWVGDLHHWMDENYLH---SCFASTGEIASIKV--IRNKQTGLSEGYGFVEF 141 (196)
Q Consensus 94 ~lfVgnLp~~~te~~l~---~~F~~~G~i~~v~i--~~d~~tg~~~g~afV~F 141 (196)
..|+.+||.++.+..+. +.|..+..-..|.+ ......+.+.|++.+.+
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~ 64 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLV 64 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEE
Confidence 46889999998887654 44544443333333 12234455666665444
No 205
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=32.03 E-value=1.5e+02 Score=19.44 Aligned_cols=47 Identities=13% Similarity=0.127 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHHHh-cC----CeeEEEEeecCCCCCcccEEEEEEcCHHHHHH
Q 037458 102 HWMDENYLHSCFAS-TG----EIASIKVIRNKQTGLSEGYGFVEFFTHATAEK 149 (196)
Q Consensus 102 ~~~te~~l~~~F~~-~G----~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~ 149 (196)
.+.+.++|++.+.. ++ .|.-..+...-..+.+.|||.| |++.+.+.+
T Consensus 11 ~Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~kk 62 (84)
T PF01282_consen 11 PTPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALKK 62 (84)
T ss_dssp SS--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHHH
Confidence 34567788777765 33 2222233333334556677766 566666554
No 206
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.20 E-value=6.3 Score=34.15 Aligned_cols=59 Identities=10% Similarity=-0.099 Sum_probs=43.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHH
Q 037458 93 KTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQ 152 (196)
Q Consensus 93 ~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~ 152 (196)
.+.|+..++-..+++++.-+|..||-|..+.+.+.-..+..+-.+||+-.+. .+..+|.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~-~~~~~i~ 62 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKA-NGPNYIQ 62 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeecc-CcccccC
Confidence 3567788888999999999999999998887766555556666788876543 3344443
No 207
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=30.62 E-value=1.2e+02 Score=24.31 Aligned_cols=65 Identities=12% Similarity=0.157 Sum_probs=33.2
Q ss_pred CCCCEEEEcCCCCCCCH----HHHHHHHHhcC-CeeEEEEeecCCCCCcccEEEEEE-cCHHHHHHHHHHhCCCCC
Q 037458 90 GENKTIWVGDLHHWMDE----NYLHSCFASTG-EIASIKVIRNKQTGLSEGYGFVEF-FTHATAEKVLQSYTSILM 159 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te----~~l~~~F~~~G-~i~~v~i~~d~~tg~~~g~afV~F-~~~~~A~~al~~l~g~~~ 159 (196)
.....||||+|....-. +.|...+.+-+ +++.+.+.. .-.|||.-.. .+.++..++++.+.+..+
T Consensus 35 ~~~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~S-----sy~G~Gt~slk~D~edl~~l~~Hi~~~~f 105 (299)
T KOG4840|consen 35 ESVKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRS-----SYNGYGTFSLKDDVEDLKCLLEHIQLCGF 105 (299)
T ss_pred eEEEEEEEcccCCCccccccHHHHHHHHhhccceeeeeeccc-----cccccccccccccHHHHHHHHHHhhccCc
Confidence 34677999999776422 23333333322 222222211 1124554333 366777778876666655
No 208
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=30.03 E-value=72 Score=26.17 Aligned_cols=70 Identities=13% Similarity=0.108 Sum_probs=40.3
Q ss_pred CHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEeccCCCCC
Q 037458 105 DENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWATFSTGD 177 (196)
Q Consensus 105 te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~a~~~~~~ 177 (196)
+-++|.+++..+.....|.++.|-..-.-+||++.+-++.+...+.+...-|... -+.+.++-++...++
T Consensus 153 ~F~~L~eii~~~~~~~~igvCiDtcH~~Aagy~~~~~~~~~~vl~~~d~~~G~~~---~~~~Hlndsk~~~G~ 222 (280)
T COG0648 153 QFGELAEIIDLIEEKERIGVCIDTCHAFAAGYDIITEEDFEKVLNEFDKVLGLEY---LKHIHLNDSKYPLGS 222 (280)
T ss_pred chhhHHHHHHhhcccCceEEEEEchhhhhccCCcCcHHHHHHHHHHHHHHhChhh---heeEeecCccccccc
Confidence 4468888888888888888888854444566776654333444444444344321 244555555543333
No 209
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=29.56 E-value=50 Score=26.42 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=20.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHH
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFA 114 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~ 114 (196)
....++|||||..++...|..++.
T Consensus 96 ~~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 96 NQPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp SSEEEEEEEETGTGHHHHHHHHHH
T ss_pred CCceEEEEEecccchHHHHHHHhh
Confidence 356689999999999999999987
No 210
>PF14385 DUF4416: Domain of unknown function (DUF4416)
Probab=29.26 E-value=1.4e+02 Score=22.48 Aligned_cols=52 Identities=15% Similarity=0.094 Sum_probs=26.5
Q ss_pred CCEEEEcCCCCC--CCHHHHHHHH-HhcCCeeEEEE--------eecCCCCCcccEEEEEEcC
Q 037458 92 NKTIWVGDLHHW--MDENYLHSCF-ASTGEIASIKV--------IRNKQTGLSEGYGFVEFFT 143 (196)
Q Consensus 92 ~~~lfVgnLp~~--~te~~l~~~F-~~~G~i~~v~i--------~~d~~tg~~~g~afV~F~~ 143 (196)
..+|+|+=+..+ ...+++...+ ..||.|..+.- ..+++-|...--.||.|..
T Consensus 4 ~a~l~~~v~~~~~~~~~~~v~~~L~~~fG~i~~~S~~~pF~~t~YY~~EmG~~l~r~~~sF~~ 66 (164)
T PF14385_consen 4 PAKLFIAVLSNDDDEWLEEVKPKLEKKFGPIDYESPPFPFDYTDYYNKEMGPGLKRRFISFKR 66 (164)
T ss_pred ceEEEEEEeecchHHHHHHHHHHHHHhhCchheecCCCCCCcccccchhcCCCceEEEEEEcc
Confidence 345666655442 1122333333 46888764421 2233445555567888864
No 211
>PF15063 TC1: Thyroid cancer protein 1
Probab=29.10 E-value=40 Score=21.83 Aligned_cols=30 Identities=10% Similarity=0.210 Sum_probs=25.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCe
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEI 119 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i 119 (196)
...++--+.||-.+++.+.|..+|..-|..
T Consensus 23 t~~RKkasaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 23 TASRKKASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred hHHhhhhhhhhhhccCHHHHHHHHHHccch
Confidence 345666788999999999999999999865
No 212
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=29.04 E-value=1.4e+02 Score=18.01 Aligned_cols=44 Identities=11% Similarity=0.108 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcC-CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHH
Q 037458 106 ENYLHSCFASTG-EIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQS 153 (196)
Q Consensus 106 e~~l~~~F~~~G-~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~ 153 (196)
-.+|.++|.+.| .|.++...... . +++.-+.+.+.+.|.++++.
T Consensus 15 La~v~~~l~~~~inI~~i~~~~~~---~-~~~~rl~~~~~~~~~~~L~~ 59 (66)
T cd04908 15 LAAVTEILSEAGINIRALSIADTS---E-FGILRLIVSDPDKAKEALKE 59 (66)
T ss_pred HHHHHHHHHHCCCCEEEEEEEecC---C-CCEEEEEECCHHHHHHHHHH
Confidence 356778888877 67777664432 2 35555666776677777654
No 213
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=29.01 E-value=92 Score=25.24 Aligned_cols=33 Identities=12% Similarity=0.024 Sum_probs=24.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEE
Q 037458 92 NKTIWVGDLHHWMDENYLHSCFASTGEIASIKV 124 (196)
Q Consensus 92 ~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i 124 (196)
.....|+|||++++..-|.+++...-.+....+
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~ 127 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMVL 127 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEEE
Confidence 346779999999999999999887555433333
No 214
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=28.99 E-value=81 Score=19.80 Aligned_cols=25 Identities=16% Similarity=0.097 Sum_probs=20.0
Q ss_pred cEEEEEEcCHHHHHHHHHHhCCCCC
Q 037458 135 GYGFVEFFTHATAEKVLQSYTSILM 159 (196)
Q Consensus 135 g~afV~F~~~~~A~~al~~l~g~~~ 159 (196)
.+.+|.|.+..+|.+|-+.|....+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCC
Confidence 4789999999999988877765544
No 215
>PF05929 Phage_GPO: Phage capsid scaffolding protein (GPO) serine peptidase; InterPro: IPR009228 This entry is represented by Bacteriophage P2, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacteriophage capsid scaffolding protein (GpO) and some related bacterial sequences. GpO is thought to function in both the assembly of proheads and the cleavage of GpN [].; GO: 0019069 viral capsid assembly
Probab=28.90 E-value=1.2e+02 Score=24.78 Aligned_cols=28 Identities=14% Similarity=0.267 Sum_probs=17.6
Q ss_pred HHHhcCCeeEEEEeecCC--CCCcccEEEE
Q 037458 112 CFASTGEIASIKVIRNKQ--TGLSEGYGFV 139 (196)
Q Consensus 112 ~F~~~G~i~~v~i~~d~~--tg~~~g~afV 139 (196)
.|..||.|..++.-.... .|+.+-||-|
T Consensus 52 ~f~~~GdV~alkaEe~~d~~~gkl~L~A~i 81 (276)
T PF05929_consen 52 PFGNYGDVLALKAEEIDDGGKGKLALFAQI 81 (276)
T ss_pred ccccccceEEEEEEEcccCCCCeEEEEEEe
Confidence 478899999988765433 2444444444
No 216
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=28.71 E-value=1.7e+02 Score=18.95 Aligned_cols=54 Identities=17% Similarity=0.118 Sum_probs=33.2
Q ss_pred EEcCCCCCCCHHHHHHHHH-------hcCCeeEEEEeecCCCCC-ccc--EEE-EEEcCHHHHHH
Q 037458 96 WVGDLHHWMDENYLHSCFA-------STGEIASIKVIRNKQTGL-SEG--YGF-VEFFTHATAEK 149 (196)
Q Consensus 96 fVgnLp~~~te~~l~~~F~-------~~G~i~~v~i~~d~~tg~-~~g--~af-V~F~~~~~A~~ 149 (196)
.+-.|...++++++.++++ ....|+++.+-++..... .+| ++| ++|.+.++.+.
T Consensus 5 vlfklk~~~~~~~~~~~~~~l~~l~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~~~l~~ 69 (97)
T PF07876_consen 5 VLFKLKPDATEEEIEEVLEALRALKDKIPGIVSFEVGRNFSPEDLAKGYDHALVSTFESEEDLDA 69 (97)
T ss_dssp EEEEESTTTCHHHHHHHHHHHHHHHHHSTTECEEEEEEESSTSSTSTT-SEEEEEEESSHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHhcccCCCceEEEEEEcccCcccccCCCcEEEEEEECCHHHHHH
Confidence 3345777888877755443 455788888877654332 234 444 68888777554
No 217
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=28.60 E-value=94 Score=26.13 Aligned_cols=29 Identities=10% Similarity=0.094 Sum_probs=24.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcC
Q 037458 89 GGENKTIWVGDLHHWMDENYLHSCFASTG 117 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~~te~~l~~~F~~~G 117 (196)
....++.|||+|-.+.--++|.+.+..+|
T Consensus 58 rLG~~~afiGkvGdD~fG~~l~~~L~~~~ 86 (330)
T KOG2855|consen 58 RLGGRVAFIGKVGDDEFGDDLLDILKQNG 86 (330)
T ss_pred hcCcceeeeecccchhhHHHHHHHHhhCC
Confidence 35588999999999988888999999876
No 218
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=28.49 E-value=2.2e+02 Score=21.69 Aligned_cols=60 Identities=8% Similarity=0.061 Sum_probs=39.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCC-CCcccEEEEEEcCHHHHHHHHHHh
Q 037458 93 KTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQT-GLSEGYGFVEFFTHATAEKVLQSY 154 (196)
Q Consensus 93 ~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~t-g~~~g~afV~F~~~~~A~~al~~l 154 (196)
..=||+|.+...+-..|.+.|...|. +|.++..+.+ ....++-.+.+.+.++...++..+
T Consensus 19 ~VR~ItN~SSG~~G~~lA~~~~~~Ga--~V~li~g~~~~~~p~~~~~i~v~sa~em~~~~~~~ 79 (185)
T PF04127_consen 19 PVRFITNRSSGKMGAALAEEAARRGA--EVTLIHGPSSLPPPPGVKVIRVESAEEMLEAVKEL 79 (185)
T ss_dssp SSEEEEES--SHHHHHHHHHHHHTT---EEEEEE-TTS----TTEEEEE-SSHHHHHHHHHHH
T ss_pred CceEecCCCcCHHHHHHHHHHHHCCC--EEEEEecCccccccccceEEEecchhhhhhhhccc
Confidence 35588999988888889888888876 4555555432 224578899999999888887654
No 219
>PRK06545 prephenate dehydrogenase; Validated
Probab=28.18 E-value=3.6e+02 Score=22.63 Aligned_cols=63 Identities=10% Similarity=0.113 Sum_probs=43.5
Q ss_pred CCCCEEEEcCCCCC-CCHHHHHHHHHhcC-CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q 037458 90 GENKTIWVGDLHHW-MDENYLHSCFASTG-EIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYT 155 (196)
Q Consensus 90 ~~~~~lfVgnLp~~-~te~~l~~~F~~~G-~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~ 155 (196)
.....|||- ++.. -.-..|...+...| .|++++|...+ +...|..-+.|.+.+++++|.+.+.
T Consensus 288 ~~~~~~~v~-v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~ 352 (359)
T PRK06545 288 PSFYDLYVD-VPDEPGVIARVTAILGEEGISIENLRILEAR--EDIHGVLQISFKNEEDRERAKALLE 352 (359)
T ss_pred CcceEEEEe-CCCCCCHHHHHHHHHHHcCCCeecceeeecc--CCcCceEEEEeCCHHHHHHHHHHHH
Confidence 455677775 4433 23345555555555 68999988775 4566788899999999999887654
No 220
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=28.06 E-value=68 Score=21.95 Aligned_cols=21 Identities=5% Similarity=0.197 Sum_probs=17.0
Q ss_pred ccEEEEEEcCHHHHHHHHHHh
Q 037458 134 EGYGFVEFFTHATAEKVLQSY 154 (196)
Q Consensus 134 ~g~afV~F~~~~~A~~al~~l 154 (196)
.-|.+++|.+.+..+++...+
T Consensus 66 VvFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 66 VVFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEEEcCchhHHHHHHHHh
Confidence 458999999999888887653
No 221
>PF14713 DUF4464: Domain of unknown function (DUF4464)
Probab=28.05 E-value=1.6e+02 Score=23.54 Aligned_cols=36 Identities=17% Similarity=0.315 Sum_probs=25.8
Q ss_pred HHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCH
Q 037458 109 LHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTH 144 (196)
Q Consensus 109 l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~ 144 (196)
.++.+..-|.+..|-+++++.+....--|||+|+..
T Consensus 92 ~RE~~nr~~~lsTIIFir~~~~~G~EISGYIDy~~s 127 (233)
T PF14713_consen 92 EREEPNRNGKLSTIIFIRDRNSKGQEISGYIDYAHS 127 (233)
T ss_pred HHHHHHhhCCcceEEEEEEecCCCceEEEEEeHHHH
Confidence 355666679999999999876554445688888654
No 222
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=27.71 E-value=1.9e+02 Score=19.37 Aligned_cols=58 Identities=16% Similarity=0.258 Sum_probs=32.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHh-------cC-CeeEEEEeecC-----CCCCccc-EEEEEEcCHHHHHHHHH
Q 037458 93 KTIWVGDLHHWMDENYLHSCFAS-------TG-EIASIKVIRNK-----QTGLSEG-YGFVEFFTHATAEKVLQ 152 (196)
Q Consensus 93 ~~lfVgnLp~~~te~~l~~~F~~-------~G-~i~~v~i~~d~-----~tg~~~g-~afV~F~~~~~A~~al~ 152 (196)
.++|| |..+++++++..+.++ .| .|.++.-.-.+ ..+..+| |.++.|....++.+.++
T Consensus 9 E~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~ele 80 (97)
T CHL00123 9 ETMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLE 80 (97)
T ss_pred eEEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHH
Confidence 34566 5667777766655544 33 55555321111 1234455 67888886666666654
No 223
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=27.39 E-value=68 Score=17.43 Aligned_cols=18 Identities=22% Similarity=0.141 Sum_probs=14.8
Q ss_pred CCCHHHHHHHHHhcCCee
Q 037458 103 WMDENYLHSCFASTGEIA 120 (196)
Q Consensus 103 ~~te~~l~~~F~~~G~i~ 120 (196)
.+++++|++.+..+|-+.
T Consensus 3 tWs~~~L~~wL~~~gi~~ 20 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIPV 20 (38)
T ss_pred CCCHHHHHHHHHHcCCCC
Confidence 578899999999987543
No 224
>PRK02302 hypothetical protein; Provisional
Probab=26.53 E-value=2e+02 Score=19.27 Aligned_cols=39 Identities=15% Similarity=0.229 Sum_probs=27.4
Q ss_pred HHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCC
Q 037458 112 CFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILM 159 (196)
Q Consensus 112 ~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~ 159 (196)
-+.+||.|..+.-. ..|+ |-|.+.++++..++.|....+
T Consensus 22 ~LrkfG~I~Y~Skk--------~kYv-vlYvn~~~~e~~~~kl~~l~f 60 (89)
T PRK02302 22 KLSKYGDIVYHSKR--------SRYL-VLYVNKEDVEQKLEELSKLKF 60 (89)
T ss_pred HHhhcCcEEEEecc--------ccEE-EEEECHHHHHHHHHHHhcCCC
Confidence 45789998865321 1365 457789999999988877655
No 225
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=25.88 E-value=1.6e+02 Score=21.52 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=23.8
Q ss_pred eeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCC
Q 037458 119 IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTS 156 (196)
Q Consensus 119 i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g 156 (196)
|.+|.+... ..||.||+....+++..+++.+.+
T Consensus 36 i~~i~vp~~-----fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 36 IYAILAPPE-----LKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred EEEEEccCC-----CCcEEEEEEEChHHHHHHHhcCCC
Confidence 555554432 569999999977888888877655
No 226
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=25.68 E-value=1.2e+02 Score=17.45 Aligned_cols=28 Identities=11% Similarity=-0.020 Sum_probs=21.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCee
Q 037458 93 KTIWVGDLHHWMDENYLHSCFASTGEIA 120 (196)
Q Consensus 93 ~~lfVgnLp~~~te~~l~~~F~~~G~i~ 120 (196)
.+++|.+.....+.++|.+++..+|.-.
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~v 29 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGKV 29 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCEE
Confidence 4567777665788899999999998743
No 227
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=25.49 E-value=1.2e+02 Score=20.31 Aligned_cols=27 Identities=19% Similarity=0.301 Sum_probs=20.7
Q ss_pred CeeEEEEeecCCCCCcccEEEEEEcCH
Q 037458 118 EIASIKVIRNKQTGLSEGYGFVEFFTH 144 (196)
Q Consensus 118 ~i~~v~i~~d~~tg~~~g~afV~F~~~ 144 (196)
.|.+|+|.+-...|+-+.|+-|+|.+.
T Consensus 2 ~iTdVRirkv~~dgrmkA~vsvT~D~e 28 (95)
T COG2088 2 EITDVRIRKVDTDGRMKAYVSVTLDNE 28 (95)
T ss_pred cceeEEEEEecCCCcEEEEEEEEecce
Confidence 467788877666688888999999763
No 228
>COG2004 RPS24A Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]
Probab=24.69 E-value=2.5e+02 Score=19.53 Aligned_cols=45 Identities=18% Similarity=0.232 Sum_probs=24.7
Q ss_pred CCCHHHHHHHHHh-cCCeeEEEEeecCC----CCCcccEEEEEEcCHHHHH
Q 037458 103 WMDENYLHSCFAS-TGEIASIKVIRNKQ----TGLSEGYGFVEFFTHATAE 148 (196)
Q Consensus 103 ~~te~~l~~~F~~-~G~i~~v~i~~d~~----tg~~~g~afV~F~~~~~A~ 148 (196)
+-+..+|++.+.. +|.=.++.++..-. .+.++||+-| |.|.+.+.
T Consensus 31 TPSr~evrekla~~l~~d~e~VvV~~ikt~fG~~~s~g~akI-Y~s~e~~~ 80 (107)
T COG2004 31 TPSRKEVREKLAAMLGADKELVVVDYIKTEFGKGRSKGYAKI-YDSVERAK 80 (107)
T ss_pred CCCHHHHHHHHHHHHCCCcceEEEEehhhhcCCcceeEEEEE-ECCHHHHH
Confidence 4567888877765 55434444443322 2456666655 55555544
No 229
>PF14581 SseB_C: SseB protein C-terminal domain
Probab=24.68 E-value=1.7e+02 Score=19.75 Aligned_cols=80 Identities=9% Similarity=0.041 Sum_probs=41.7
Q ss_pred CCEEEEcCCCCCCC--HHHHHHHHHhcCCeeEEEEeecCCCCCcccEE-EEEEcC--HHHHHHHHHHhCCCCCCCCCccE
Q 037458 92 NKTIWVGDLHHWMD--ENYLHSCFASTGEIASIKVIRNKQTGLSEGYG-FVEFFT--HATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 92 ~~~lfVgnLp~~~t--e~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~a-fV~F~~--~~~A~~al~~l~g~~~~~~~~~i 166 (196)
+.+|-||-.....+ .+.|.++|++.+.|....+..-...+....|. -|+|.. .+..-.++..+....+. .+..|
T Consensus 5 g~~v~l~~P~~~p~~l~~aL~~~~~~~~~V~~Ayl~~~~~~~~~~~~li~vd~~~~~~~~~~~~i~~~~~~~~~-~~~~v 83 (108)
T PF14581_consen 5 GEKVLLGEPEEEPTDLLAALSEYFKQHKNVRAAYLALMQDEDEQPSLLIGVDFDGEDIEEIFQEIGRAARPYLP-DGWPV 83 (108)
T ss_pred CCEEEecCCccCHHHHHHHHHHHHhhCccHHHhHHHHhhccCCCceEEEEEeccChhHHHHHHHHHHHhhhcCC-CCceE
Confidence 44666664433322 36788999999988777654433323333344 456655 33333344443333333 23555
Q ss_pred EEEecc
Q 037458 167 RLNWAT 172 (196)
Q Consensus 167 ~v~~a~ 172 (196)
.+....
T Consensus 84 d~~~~~ 89 (108)
T PF14581_consen 84 DFVLLD 89 (108)
T ss_pred EEEEcc
Confidence 555444
No 230
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=24.08 E-value=69 Score=28.62 Aligned_cols=38 Identities=21% Similarity=0.305 Sum_probs=29.8
Q ss_pred ccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEeccC
Q 037458 134 EGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWATF 173 (196)
Q Consensus 134 ~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~a~~ 173 (196)
..|++++|++...+.+|+..++|.... +..+++..+..
T Consensus 63 ~~~~~~~~et~~~~~ka~~~v~g~~~k--~~~~~~~~~~~ 100 (534)
T KOG2187|consen 63 PKYAYVTFETPSDAGKAINLVDGLLYK--GFILRVQLGAT 100 (534)
T ss_pred CCceEEEEeccchhhhHHHHHhhhhhh--cchhhhhhccc
Confidence 369999999999999999999998773 45555555444
No 231
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=24.08 E-value=1.9e+02 Score=19.61 Aligned_cols=41 Identities=10% Similarity=0.108 Sum_probs=24.2
Q ss_pred HHHHHHhcCCe-----eEEEEeecCCCCCcccEEEEEEcCHHHHHHHH
Q 037458 109 LHSCFASTGEI-----ASIKVIRNKQTGLSEGYGFVEFFTHATAEKVL 151 (196)
Q Consensus 109 l~~~F~~~G~i-----~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al 151 (196)
+...|++||.= -++..+.. .........|+|.+.+.|..+.
T Consensus 25 ~~~a~~~~Ggr~LvRGG~v~~lEG--~w~ptr~vviEFps~~~ar~~y 70 (96)
T COG5470 25 AKPAIEKFGGRYLVRGGEVETLEG--EWRPTRNVVIEFPSLEAARDCY 70 (96)
T ss_pred hHHHHHHhCCeeEeeCCCeeeccC--CCCcccEEEEEcCCHHHHHHHh
Confidence 45677788731 11222222 1333457899999998887664
No 232
>PF07237 DUF1428: Protein of unknown function (DUF1428); InterPro: IPR009874 This family consists of several hypothetical bacterial and one archaeal sequence of around 120 residues in length. The function of this family is unknown.; PDB: 2OKQ_A.
Probab=23.94 E-value=2.5e+02 Score=19.35 Aligned_cols=47 Identities=15% Similarity=0.236 Sum_probs=29.6
Q ss_pred HHHHHHHhcCCeeEEEEeec-----CCC----------CCcccEEEEEEcCHHHHHHHHHHh
Q 037458 108 YLHSCFASTGEIASIKVIRN-----KQT----------GLSEGYGFVEFFTHATAEKVLQSY 154 (196)
Q Consensus 108 ~l~~~F~~~G~i~~v~i~~d-----~~t----------g~~~g~afV~F~~~~~A~~al~~l 154 (196)
....+|..||.+.-+.-.-| +.| +..--|.+|+|.+++..+++...+
T Consensus 24 ~a~~vf~e~GAl~~vE~wgdDvp~G~~TsF~~Av~a~~~E~VVFSWi~wpska~rD~~~~k~ 85 (103)
T PF07237_consen 24 KAAEVFKEHGALRVVECWGDDVPDGKVTSFPRAVKAKPDETVVFSWIEWPSKATRDAANAKM 85 (103)
T ss_dssp HHHHHHHHTT-SEEEEEEEEE----SS--HHHHTT--TTEEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEEEeecCcCCcCccCCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHHh
Confidence 34578899997655443222 111 223448999999999988887654
No 233
>PRK02886 hypothetical protein; Provisional
Probab=23.91 E-value=2.3e+02 Score=18.90 Aligned_cols=39 Identities=13% Similarity=0.246 Sum_probs=27.0
Q ss_pred HHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCC
Q 037458 112 CFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILM 159 (196)
Q Consensus 112 ~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~ 159 (196)
-+.+||.|..+.-. ..|+ |-|.+.++++..++.|....+
T Consensus 20 ~LrkyG~I~Y~Skr--------~kYv-vlYvn~~~~e~~~~kl~~l~f 58 (87)
T PRK02886 20 QLRKFGNVHYVSKR--------LKYA-VLYCDMEQVEDIMNKLSSLPF 58 (87)
T ss_pred HHhhcCcEEEEecc--------ccEE-EEEECHHHHHHHHHHHhcCCC
Confidence 45789998875321 1355 457788999999888877554
No 234
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=23.35 E-value=2.9e+02 Score=19.79 Aligned_cols=35 Identities=9% Similarity=0.162 Sum_probs=24.9
Q ss_pred cEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEecc
Q 037458 135 GYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWAT 172 (196)
Q Consensus 135 g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~a~ 172 (196)
.+-++.+.+.. ...++..|.+..+. ++.|+|..-.
T Consensus 27 ~~~icv~g~~~-~~~~L~~l~~~~~~--~~~i~v~~~~ 61 (145)
T PF13689_consen 27 PFRICVLGDDP-FAEALSTLAGKQVG--GRPIRVRRLS 61 (145)
T ss_pred CeEEEEECChH-HHHHHHHhhhcccC--CCcEEEEECC
Confidence 47777777665 44567788888884 6888887654
No 235
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=23.34 E-value=2.4e+02 Score=21.87 Aligned_cols=45 Identities=16% Similarity=0.307 Sum_probs=29.9
Q ss_pred CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEeccCCC
Q 037458 118 EIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWATFST 175 (196)
Q Consensus 118 ~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~a~~~~ 175 (196)
.+.-|.+++++ +.|.+.++|.+.++. .|+.+ +.-.|++.+.+..-
T Consensus 36 ~l~PVlF~rdK----------~I~qs~e~ai~~lE~-e~KlW--reteI~I~~g~p~V 80 (238)
T PF10915_consen 36 NLQPVLFVRDK----------IIFQSAEDAIRILEE-EGKLW--RETEIKIQSGKPSV 80 (238)
T ss_pred CCCceeeecch----------hhccCHHHHHHHHHH-hcchh--eeeeEEEecCCccc
Confidence 34455566664 458888888888864 66666 35667777766543
No 236
>KOG1888 consensus Putative phosphoinositide phosphatase [Lipid transport and metabolism]
Probab=23.24 E-value=2.6e+02 Score=26.60 Aligned_cols=62 Identities=11% Similarity=0.132 Sum_probs=40.9
Q ss_pred CCEEEEcCCCC--CCCHHHHHHHHHhcC-CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCC
Q 037458 92 NKTIWVGDLHH--WMDENYLHSCFASTG-EIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILM 159 (196)
Q Consensus 92 ~~~lfVgnLp~--~~te~~l~~~F~~~G-~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~ 159 (196)
.--|+|.+.++ .++.....++|.+|| .|.-+.+++.++.+++.+ .+ .++.+.||..||....
T Consensus 309 KP~I~l~~~DP~y~~a~lHF~~L~~RYG~PIiilNLIKt~ekr~~E~--IL----~~eF~~ai~yLNqflp 373 (868)
T KOG1888|consen 309 KPDIVLDKRDPFYETAALHFDNLVQRYGNPIIILNLIKTNEKRPRES--IL----REEFENAIDYLNQFLP 373 (868)
T ss_pred CCCeEEeccCCccchHHHHHHHHHHhcCCcEEEEEeeccccCCchhH--HH----HHHHHHHHHHHhccCC
Confidence 33467776655 567788899999999 566677777654333322 11 4677788888885433
No 237
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=22.97 E-value=1.1e+02 Score=25.82 Aligned_cols=66 Identities=9% Similarity=0.067 Sum_probs=38.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecC----------CCCCcccEEEEEEcCHHHHHHHHHHhCCC
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNK----------QTGLSEGYGFVEFFTHATAEKVLQSYTSI 157 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~----------~tg~~~g~afV~F~~~~~A~~al~~l~g~ 157 (196)
....+||+++-..+..+.|+.+=..+-+..++.+..-. .-.+...|+.+.|.++++|.+..+. +|.
T Consensus 159 ka~v~yv~Gffltv~p~ai~~v~qh~~e~~r~~~lnlsapfI~q~~~~~l~~v~~y~DiifgNe~EA~af~~~-~~~ 234 (343)
T KOG2854|consen 159 KAKVFYVAGFFLTVSPDAIRKVAQHAAENNRVFTLNLSAPFISQFFKDALDKVLPYADIIFGNEDEAAAFARA-HGW 234 (343)
T ss_pred heeEEEEEEEEEEeChHHHHHHHHHHHHhcchhheeccchhHHHHHHHHHHhhcCcceEEEcCHHHHHHHHHh-hCC
Confidence 45668888888877776666554433322221111000 0112345899999999999877654 443
No 238
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=22.91 E-value=3.5e+02 Score=21.89 Aligned_cols=30 Identities=13% Similarity=0.368 Sum_probs=21.8
Q ss_pred CCCcccEEEEEEc----CHHHHHHHHHHhCCCCC
Q 037458 130 TGLSEGYGFVEFF----THATAEKVLQSYTSILM 159 (196)
Q Consensus 130 tg~~~g~afV~F~----~~~~A~~al~~l~g~~~ 159 (196)
+.+.+|||++.|. +......+|+..|+..+
T Consensus 205 id~~kg~griafaip~d~~~~l~e~iK~~n~~i~ 238 (299)
T KOG2943|consen 205 IDRAKGFGRIAFAIPTDDLPKLQEAIKSANGTIL 238 (299)
T ss_pred ccccccceeEEEeccccccccHHHHHHHhccccc
Confidence 4667899999996 33456677887787665
No 239
>PF13820 Nucleic_acid_bd: Putative nucleic acid-binding region
Probab=22.90 E-value=2e+02 Score=21.20 Aligned_cols=60 Identities=18% Similarity=0.164 Sum_probs=33.2
Q ss_pred CEEEEcCCCCC-CCHHHHHHHHHh-cCC-eeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCC
Q 037458 93 KTIWVGDLHHW-MDENYLHSCFAS-TGE-IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTS 156 (196)
Q Consensus 93 ~~lfVgnLp~~-~te~~l~~~F~~-~G~-i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g 156 (196)
.-+|+|+|... .+-+.|+..+.. |+. +..++.... ..-+-+.|+|.-..++...++.|-.
T Consensus 5 fla~~G~l~~~~~~ld~i~~~l~~L~~~~~~~l~~~~~----~~~~sv~V~f~ipreaa~~Lr~LA~ 67 (149)
T PF13820_consen 5 FLAYIGGLRMFQYKLDDIKNWLASLYKPRISDLKVRKV----EPWNSVRVTFSIPREAATRLRQLAQ 67 (149)
T ss_pred EEEEECChhhhHHHHHHHHHHHHHHHhcccccceeecc----ccCceEEEEEechHHHHHHHHHHhh
Confidence 34677888621 223445555444 222 222332221 1225799999988888777776644
No 240
>cd06233 Peptidase_M14-like_6 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The
Probab=22.75 E-value=82 Score=25.85 Aligned_cols=52 Identities=19% Similarity=0.199 Sum_probs=34.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcc-cEEEEEE
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSE-GYGFVEF 141 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~-g~afV~F 141 (196)
....-||-|+-.+.++...|++++..++.-.+-.+..|-.||... |++.+.+
T Consensus 176 ~~P~GlfyGG~~p~wS~~~L~~il~~~~~~~~~v~~iD~HTGlGp~g~~~~i~ 228 (283)
T cd06233 176 THPDGLFYGGTAPQWSNRTLREILRRHLAGAERVAWIDVHTGLGPWGYGELIF 228 (283)
T ss_pred cCCCccccCCCCccHHHHHHHHHHHHhcccccEEEEEEeCCCCCCCCCCeEEE
Confidence 345669999999999999999999987643222233455676554 5444333
No 241
>TIGR00279 L10e ribosomal protein L10.e. L10.e is distantly related to eubacterial ribosomal protein L16.
Probab=22.57 E-value=3.3e+02 Score=20.62 Aligned_cols=63 Identities=13% Similarity=0.176 Sum_probs=32.1
Q ss_pred CCCEEEEcCCCCC-CCHHHHHHHHH----------hcCCeeEEEEeecCCCCCcccEEEEEEc----CHHHHHHHHHHhC
Q 037458 91 ENKTIWVGDLHHW-MDENYLHSCFA----------STGEIASIKVIRNKQTGLSEGYGFVEFF----THATAEKVLQSYT 155 (196)
Q Consensus 91 ~~~~lfVgnLp~~-~te~~l~~~F~----------~~G~i~~v~i~~d~~tg~~~g~afV~F~----~~~~A~~al~~l~ 155 (196)
++..|||.-.|.. +|+.-+..-.. .+|.+..+.....+ |-.+.++. +.+.|..|++ +.
T Consensus 80 ~~~k~wIRvfP~~~lt~kp~~trmGaDRlq~GMr~gkG~p~~wvArVk~------Gqiifei~~~~~~~~~AkeAlr-~A 152 (172)
T TIGR00279 80 MGYHLKIRVYPHHILRENKMATGAGADRIQQGMRGAFGKPVGTAARVKI------GQKIFSVWTKPSNFDVAKEALR-RA 152 (172)
T ss_pred cceEEEEEECCCCceecCchhhhcCchhhhcccccCCCCccEEEEEECc------CCEEEEEEeecCCHHHHHHHHH-HH
Confidence 4456666655554 33443333232 35555444333222 33444443 5578888886 45
Q ss_pred CCCCC
Q 037458 156 SILMP 160 (196)
Q Consensus 156 g~~~~ 160 (196)
...|.
T Consensus 153 ~~KLP 157 (172)
T TIGR00279 153 AMKFP 157 (172)
T ss_pred hccCC
Confidence 56665
No 242
>PRK00110 hypothetical protein; Validated
Probab=22.43 E-value=3.9e+02 Score=21.41 Aligned_cols=44 Identities=16% Similarity=0.198 Sum_probs=29.0
Q ss_pred CCEEEEcCCCCC--CCHHHHHHHHHhcCCe----eEEEEeecCCCCCcccEEEEEEc
Q 037458 92 NKTIWVGDLHHW--MDENYLHSCFASTGEI----ASIKVIRNKQTGLSEGYGFVEFF 142 (196)
Q Consensus 92 ~~~lfVgnLp~~--~te~~l~~~F~~~G~i----~~v~i~~d~~tg~~~g~afV~F~ 142 (196)
...|.|--|..+ -|-.+||.+|.++|.- -+|.++.++ .|.|+|.
T Consensus 94 GvaiiVe~lTDN~nRt~~~vR~~f~K~gG~l~~~Gsv~~~Fe~-------kG~i~~~ 143 (245)
T PRK00110 94 GVAIIVEALTDNRNRTAAEVRHAFSKNGGNLGETGSVSYMFDR-------KGVIVIE 143 (245)
T ss_pred CeEEEEEEecCCHHHHHHHHHHHHHhcCceeCCCcceEEEecc-------ceEEEeC
Confidence 344556556554 3567999999998643 346777775 5666665
No 243
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=22.43 E-value=1.4e+02 Score=20.80 Aligned_cols=24 Identities=4% Similarity=0.001 Sum_probs=11.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcC
Q 037458 93 KTIWVGDLHHWMDENYLHSCFASTG 117 (196)
Q Consensus 93 ~~lfVgnLp~~~te~~l~~~F~~~G 117 (196)
--|||+|.- -..+..|.++++.|+
T Consensus 72 lfl~Vn~~~-p~~~~~~~~lY~~~k 95 (112)
T cd01611 72 LFLFVNNSL-PPTSATMSQLYEEHK 95 (112)
T ss_pred EEEEECCcc-CCchhHHHHHHHHhC
Confidence 345666521 123445556666554
No 244
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=22.42 E-value=1.7e+02 Score=16.78 Aligned_cols=42 Identities=21% Similarity=0.235 Sum_probs=26.6
Q ss_pred HHHHHHHHhcC-CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHH
Q 037458 107 NYLHSCFASTG-EIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVL 151 (196)
Q Consensus 107 ~~l~~~F~~~G-~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al 151 (196)
..+...|...| .|.++.+.... ..++...+++++.+.|.+++
T Consensus 13 ~~i~~~l~~~~inI~~~~~~~~~---~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 13 AEVTEILAEAGINIKAISIAETR---GEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHcCCCEeeEEEEEcc---CCcEEEEEEECCHHHHHHHh
Confidence 45667777766 67777655432 23456677778877776664
No 245
>PHA03008 hypothetical protein; Provisional
Probab=22.32 E-value=1.6e+02 Score=22.98 Aligned_cols=39 Identities=13% Similarity=0.221 Sum_probs=32.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEee
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIR 126 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~ 126 (196)
-.+.+..+||+|+..--+...++.+|.+|..+.++-++.
T Consensus 17 ~~~~~d~~~~snit~~h~~n~i~~ff~~~d~~~~~ifvp 55 (234)
T PHA03008 17 IDEICDIAFISNITHIHDHNIIKIFFDKFDDFDEIIFVP 55 (234)
T ss_pred CcccccEEEEecccccccccHHHHHHhhccccceEEEcc
Confidence 345677899999998888899999999999888776554
No 246
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=22.17 E-value=87 Score=26.35 Aligned_cols=16 Identities=13% Similarity=0.214 Sum_probs=12.6
Q ss_pred CCCCCCceEEecCCCC
Q 037458 180 SDNGPDLSIFVGDLAA 195 (196)
Q Consensus 180 ~~~~~~~~ifV~nL~~ 195 (196)
+.....++|+|+||||
T Consensus 91 ~s~~~pkRLhVSNIPF 106 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPF 106 (376)
T ss_pred CCCCCCceeEeecCCc
Confidence 3345677999999997
No 247
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=22.04 E-value=2.2e+02 Score=18.11 Aligned_cols=39 Identities=13% Similarity=0.259 Sum_probs=27.4
Q ss_pred HHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCC
Q 037458 112 CFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILM 159 (196)
Q Consensus 112 ~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~ 159 (196)
-+.+||.|..+.-. ..|+ |.|.+.++++..++.|....+
T Consensus 16 ~L~kfG~i~Y~Skk--------~kYv-vlYvn~~~~e~~~~kl~~l~f 54 (71)
T PF09902_consen 16 QLRKFGDIHYVSKK--------MKYV-VLYVNEEDVEEIIEKLKKLKF 54 (71)
T ss_pred hHhhcccEEEEECC--------ccEE-EEEECHHHHHHHHHHHhcCCC
Confidence 46789998765321 1365 447788999999988877655
No 248
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=22.03 E-value=90 Score=22.25 Aligned_cols=32 Identities=16% Similarity=0.105 Sum_probs=25.9
Q ss_pred EEEcCCCCC-CCHHHHHHHHHhcCCeeEEEEee
Q 037458 95 IWVGDLHHW-MDENYLHSCFASTGEIASIKVIR 126 (196)
Q Consensus 95 lfVgnLp~~-~te~~l~~~F~~~G~i~~v~i~~ 126 (196)
|-|-|||.. .+++.|+.+.+.+|.+.++....
T Consensus 107 Vri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 107 VRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred hhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 444599987 78888999999999999887644
No 249
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=21.43 E-value=1.9e+02 Score=16.94 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=25.2
Q ss_pred CHHHHHHHHHhcC-CeeEEEEeecCCCCCcccEEEEEEcCH-HHHHHHHHHhCC
Q 037458 105 DENYLHSCFASTG-EIASIKVIRNKQTGLSEGYGFVEFFTH-ATAEKVLQSYTS 156 (196)
Q Consensus 105 te~~l~~~F~~~G-~i~~v~i~~d~~tg~~~g~afV~F~~~-~~A~~al~~l~g 156 (196)
.-.+|..+|..+| .|.++....+...+. ...++++... +....+++.|..
T Consensus 13 ~l~~i~~~l~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~ 64 (72)
T cd04878 13 VLNRISGLFARRGFNIESLTVGPTEDPGI--SRITIVVEGDDDVIEQIVKQLNK 64 (72)
T ss_pred HHHHHHHHHHhCCCCEEEEEeeecCCCCe--EEEEEEEECCHHHHHHHHHHHhC
Confidence 3457788888886 566666543311111 1223333222 555556665553
No 250
>PF09162 Tap-RNA_bind: Tap, RNA-binding; InterPro: IPR015245 This domain adopts a structure consisting of an alpha+beta sandwich with an antiparallel beta-sheet, arranged in a 2(beta-alpha-beta) motif. It is mainly found in mRNA export factors, which mediate the sequence nonspecific nuclear export of cellular mRNAs as well as the sequence-specific export of retroviral mRNAs bearing the constitutive transport element []. ; GO: 0003723 RNA binding, 0006406 mRNA export from nucleus, 0005634 nucleus, 0005737 cytoplasm; PDB: 1FT8_A 1KOH_C 1KOO_C 3RW6_B 3RW7_C 1FO1_A.
Probab=21.38 E-value=1.5e+02 Score=19.78 Aligned_cols=58 Identities=12% Similarity=0.177 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHhcCC--eeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEE
Q 037458 104 MDENYLHSCFASTGE--IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRL 168 (196)
Q Consensus 104 ~te~~l~~~F~~~G~--i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v 168 (196)
.+++.|...+...-+ ..-+.+..++ -.++-|-+-.++..||+.++.+..+..|++|.|
T Consensus 18 YdK~wLl~~iq~~c~v~F~Pv~fh~~~-------~~a~FfV~D~~tA~aLk~vsrkI~~~dg~Ki~I 77 (88)
T PF09162_consen 18 YDKDWLLNSIQSHCSVPFTPVDFHYEK-------NRAQFFVEDASTASALKDVSRKICDEDGFKISI 77 (88)
T ss_dssp S-HHHHHHHHHHHSSS----EEEEEET-------TEEEEEESSHHHHHHHHTTTTTEEBTTSBEE--
T ss_pred cCHHHHHHHHHHHCCCCeeeeeeeeeC-------CEEEEEeCCHHHHHHHHHCCCceECCCCCEEEE
Confidence 456666655554333 3444455553 234555556667778877777655534555443
No 251
>PF10994 DUF2817: Protein of unknown function (DUF2817); InterPro: IPR021259 This family of proteins has no known function.
Probab=21.27 E-value=1.1e+02 Score=25.95 Aligned_cols=53 Identities=15% Similarity=0.039 Sum_probs=36.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCC-cccEEEEEEcC
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGL-SEGYGFVEFFT 143 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~-~~g~afV~F~~ 143 (196)
...-||-|+-...++...|++++.+++.-.+-.+..|-.||. ..|++.+.+..
T Consensus 178 ~P~GlfYGG~~p~wS~~~L~~il~~~~~~~~~v~~iDlHTGlGp~G~~~~i~~~ 231 (341)
T PF10994_consen 178 HPDGLFYGGTEPEWSNRTLREILREHLAGAERVAWIDLHTGLGPYGHGELICDG 231 (341)
T ss_pred CCCccccCCCCccHHHHHHHHHHHHHhhcCcEEEEEEeCCCCCCCCceEEEecC
Confidence 345689999999999999999999887443333444556764 34666665544
No 252
>PF09702 Cas_Csa5: CRISPR-associated protein (Cas_Csa5); InterPro: IPR010157 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor family of Cas protein found in various species of Sulfolobus and Pyrococcus (all archaeal). It is found with two different CRISPR loci in Sulfolobus solfataricus.
Probab=21.15 E-value=1.4e+02 Score=20.64 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=17.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHh
Q 037458 89 GGENKTIWVGDLHHWMDENYLHSCFAS 115 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~~te~~l~~~F~~ 115 (196)
+.+.+.+++|.|| |++++..|++.
T Consensus 61 ekeg~~i~~g~lP---t~~eVe~Fl~~ 84 (105)
T PF09702_consen 61 EKEGNYIIVGYLP---TDEEVEDFLDD 84 (105)
T ss_pred cCCCCEEecCCCC---ChHHHHHHHHH
Confidence 4566889999999 45666666653
No 253
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=21.14 E-value=1.7e+02 Score=16.44 Aligned_cols=29 Identities=28% Similarity=0.221 Sum_probs=19.5
Q ss_pred ecCCCCCcccEEEEEEcCHHHHHHHHHHh
Q 037458 126 RNKQTGLSEGYGFVEFFTHATAEKVLQSY 154 (196)
Q Consensus 126 ~d~~tg~~~g~afV~F~~~~~A~~al~~l 154 (196)
.+..+|+.+-..---|.+..+|.+++..+
T Consensus 9 ~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~ 37 (46)
T PF14657_consen 9 YDDETGKRKQKTKRGFKTKKEAEKALAKI 37 (46)
T ss_pred EECCCCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 45556766544444488999999887654
No 254
>PF11004 Kdo_hydroxy: 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase; InterPro: IPR021266 This bacterial family of proteins has no known function.
Probab=20.76 E-value=2.1e+02 Score=23.45 Aligned_cols=47 Identities=11% Similarity=0.085 Sum_probs=31.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHH-hcCCeeEEEEeecCCCCCcccE
Q 037458 89 GGENKTIWVGDLHHWMDENYLHSCFA-STGEIASIKVIRNKQTGLSEGY 136 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~~te~~l~~~F~-~~G~i~~v~i~~d~~tg~~~g~ 136 (196)
-+.+..||+-+|.+.++++|. .++. .+-..+.-.|..+..++..+|.
T Consensus 18 LE~G~VL~fP~l~F~l~~~E~-~fL~p~~~d~k~KNIs~~p~~~~l~G~ 65 (281)
T PF11004_consen 18 LEQGKVLYFPQLRFPLSPEER-AFLDPAIVDPKRKNISYRPNTGSLRGA 65 (281)
T ss_pred hhCCCEEEeCCCCCCCChhHH-hhcChhhhCCCCCceeecCCCCceecc
Confidence 357889999999999988877 3443 3333333345556666777773
No 255
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=20.76 E-value=65 Score=22.77 Aligned_cols=44 Identities=20% Similarity=0.055 Sum_probs=28.5
Q ss_pred CCCCCHHHHHHHHHh---cCCeeEEEEeecCCCCCcccEEEEEEcCH
Q 037458 101 HHWMDENYLHSCFAS---TGEIASIKVIRNKQTGLSEGYGFVEFFTH 144 (196)
Q Consensus 101 p~~~te~~l~~~F~~---~G~i~~v~i~~d~~tg~~~g~afV~F~~~ 144 (196)
|..+|-.+|+++|+. |-.|.+-.+.+|-....+-..||..|...
T Consensus 83 PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 83 PYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred ceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 557899999999986 44454444555533333445788888654
No 256
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.66 E-value=1.7e+02 Score=18.39 Aligned_cols=30 Identities=13% Similarity=0.187 Sum_probs=20.0
Q ss_pred HHHHHHHHhcC-CeeEEEEeecCCCCCcccEEEEEEc
Q 037458 107 NYLHSCFASTG-EIASIKVIRNKQTGLSEGYGFVEFF 142 (196)
Q Consensus 107 ~~l~~~F~~~G-~i~~v~i~~d~~tg~~~g~afV~F~ 142 (196)
.+|-.+.-.|| .|..-.+..|- ..|||.|-
T Consensus 15 cdlcr~il~fGl~i~rgd~sTDG------kWCyiv~w 45 (69)
T cd04894 15 CDLCRIILEFGLNITRGDDSTDG------RWCYIVFW 45 (69)
T ss_pred cHHHHHHHHhceEEEecccccCC------cEEEEEEE
Confidence 45666666677 56666666652 49999985
No 257
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=20.54 E-value=2.2e+02 Score=17.48 Aligned_cols=50 Identities=22% Similarity=0.278 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcC-CeeEEEEeecCCCCCcccEEEEEEcC---HHHHHHHHHHhCC
Q 037458 106 ENYLHSCFASTG-EIASIKVIRNKQTGLSEGYGFVEFFT---HATAEKVLQSYTS 156 (196)
Q Consensus 106 e~~l~~~F~~~G-~i~~v~i~~d~~tg~~~g~afV~F~~---~~~A~~al~~l~g 156 (196)
-.++.+.|+.+| .+.++.-...+. ....-.-||++.. ....+.+++.|..
T Consensus 13 L~~vL~~f~~~~vni~~I~Srp~~~-~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 13 LAKALKVFAERGINLTKIESRPSRK-GLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred HHHHHHHHHHCCCCEEEEEeeecCC-CCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 456778888886 566663332221 1223355788874 4556667766543
No 258
>COG3102 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.24 E-value=3.2e+02 Score=20.75 Aligned_cols=76 Identities=12% Similarity=0.166 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHhcCCeeEEEEeecC----------------------------CCCCcccEEEEEEc----CHHHHHH
Q 037458 102 HWMDENYLHSCFASTGEIASIKVIRNK----------------------------QTGLSEGYGFVEFF----THATAEK 149 (196)
Q Consensus 102 ~~~te~~l~~~F~~~G~i~~v~i~~d~----------------------------~tg~~~g~afV~F~----~~~~A~~ 149 (196)
...+.+.++..|.+||++.+..++..+ ++--..|.-.|+|. -.+...+
T Consensus 49 ~~qtAk~wr~~~lqcG~~lS~n~iNGRpI~li~l~~Pl~v~~w~id~iELP~P~~K~YP~egWEHIEiVlP~~peel~~~ 128 (185)
T COG3102 49 QEQTAKRWRRGLLQCGELLSENLINGRPICLIKLHQPLQVAHWQIDIIELPYPKNKRYPHEGWEHIEIVLPGDPEELNAR 128 (185)
T ss_pred cHHHHHHHHHHHHHHHHHhhhhhcCCceEEEEEcCCcceecceEEEEEEccCCcCCCCCCcCceeEEEEcCCChHHHHHH
Confidence 344566778888899976554322211 11123455556653 3445556
Q ss_pred HHHHhCCCCCCCCCccEEEEeccCCCCCCC
Q 037458 150 VLQSYTSILMPNTDQPFRLNWATFSTGDKR 179 (196)
Q Consensus 150 al~~l~g~~~~~~~~~i~v~~a~~~~~~~~ 179 (196)
++..++...+. ..-|+|..++......|
T Consensus 129 ~~~l~~~~~l~--~~gi~vk~ssp~ge~er 156 (185)
T COG3102 129 ALALLNDEFLW--ELGISVKLSSPQGEHER 156 (185)
T ss_pred HHhhcchhhcc--cCceEEEecCCCCcccc
Confidence 77666655443 34478887776543333
No 259
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=20.14 E-value=2.9e+02 Score=23.15 Aligned_cols=71 Identities=18% Similarity=0.215 Sum_probs=44.8
Q ss_pred cCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEeccCCCCC
Q 037458 98 GDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWATFSTGD 177 (196)
Q Consensus 98 gnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~a~~~~~~ 177 (196)
|.--..++.++|+++|..--++ .... | -...+|=++.+..+|+.|+..|..... ++++-|.+...+.+.
T Consensus 135 g~Y~~~~~~~el~~~~k~qle~-----~~~~--g-vD~L~fETip~~~EA~a~l~~l~~~~~---~~p~~is~t~~d~g~ 203 (317)
T KOG1579|consen 135 GIYGDNVEFEELYDFFKQQLEV-----FLEA--G-VDLLAFETIPNVAEAKAALELLQELGP---SKPFWISFTIKDEGR 203 (317)
T ss_pred cccccccCHHHHHHHHHHHHHH-----HHhC--C-CCEEEEeecCCHHHHHHHHHHHHhcCC---CCcEEEEEEecCCCc
Confidence 3445567888999998763111 0000 0 124678888899999999988766533 467777777655444
Q ss_pred CC
Q 037458 178 KR 179 (196)
Q Consensus 178 ~~ 179 (196)
.+
T Consensus 204 l~ 205 (317)
T KOG1579|consen 204 LR 205 (317)
T ss_pred cc
Confidence 33
Done!