Query 037458
Match_columns 196
No_of_seqs 329 out of 1758
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 21:34:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037458.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037458hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f25_A Polyadenylate-binding p 99.9 1.1E-25 3.7E-30 158.9 10.5 102 91-196 4-108 (115)
2 4fxv_A ELAV-like protein 1; RN 99.9 1.6E-24 5.6E-29 149.0 11.1 82 90-173 17-98 (99)
3 1u6f_A Tcubp1, RNA-binding pro 99.9 1.8E-22 6.1E-27 146.6 16.7 89 87-177 37-125 (139)
4 3s8s_A Histone-lysine N-methyl 99.9 3.1E-23 1E-27 145.3 11.4 83 90-174 4-86 (110)
5 2hvz_A Splicing factor, argini 99.9 4.5E-23 1.6E-27 141.8 10.0 95 93-194 1-100 (101)
6 4f02_A Polyadenylate-binding p 99.9 3E-23 1E-27 161.1 10.2 102 90-196 13-114 (213)
7 1x5s_A Cold-inducible RNA-bind 99.9 1.7E-22 5.9E-27 139.1 12.8 91 87-179 7-97 (102)
8 2dgs_A DAZ-associated protein 99.9 3E-22 1E-26 137.2 13.5 88 87-177 5-92 (99)
9 2lkz_A RNA-binding protein 5; 99.9 2.6E-23 8.9E-28 141.9 7.8 84 88-173 5-94 (95)
10 2dgo_A Cytotoxic granule-assoc 99.9 3.3E-22 1.1E-26 140.7 13.6 91 87-179 10-100 (115)
11 1x5u_A Splicing factor 3B subu 99.9 3.1E-22 1E-26 138.5 13.3 89 87-177 10-98 (105)
12 2dnz_A Probable RNA-binding pr 99.9 4.7E-22 1.6E-26 135.1 13.6 86 90-177 3-88 (95)
13 1whw_A Hypothetical protein ri 99.9 2.8E-22 9.7E-27 137.3 12.6 88 88-177 4-91 (99)
14 2dgp_A Bruno-like 4, RNA bindi 99.9 3.6E-22 1.2E-26 138.4 12.7 91 87-177 8-99 (106)
15 3bs9_A Nucleolysin TIA-1 isofo 99.9 1.6E-22 5.5E-27 135.2 10.5 83 90-174 4-86 (87)
16 2dnm_A SRP46 splicing factor; 99.9 3.3E-22 1.1E-26 137.9 11.8 87 87-175 8-94 (103)
17 2cpz_A CUG triplet repeat RNA- 99.9 3.6E-22 1.2E-26 140.5 12.1 88 88-177 21-108 (115)
18 3mdf_A Peptidyl-prolyl CIS-tra 99.9 2.2E-22 7.6E-27 133.9 10.1 83 88-172 3-85 (85)
19 2m2b_A RNA-binding protein 10; 99.9 1.4E-22 4.8E-27 146.0 9.7 88 86-176 17-110 (131)
20 2cq0_A Eukaryotic translation 99.9 3.8E-22 1.3E-26 137.6 11.3 88 88-177 11-98 (103)
21 2div_A TRNA selenocysteine ass 99.9 3.3E-22 1.1E-26 137.0 10.8 86 87-174 4-94 (99)
22 2dnh_A Bruno-like 5, RNA bindi 99.9 1.2E-21 4.2E-26 135.5 13.8 89 88-177 11-100 (105)
23 2cqb_A Peptidyl-prolyl CIS-tra 99.9 2.3E-22 7.7E-27 138.5 9.9 90 87-178 7-96 (102)
24 2lxi_A RNA-binding protein 10; 99.9 4.2E-23 1.4E-27 139.8 6.1 82 92-175 1-84 (91)
25 2cqc_A Arginine/serine-rich sp 99.9 4.1E-22 1.4E-26 135.3 11.0 85 87-173 10-94 (95)
26 2do4_A Squamous cell carcinoma 99.9 9.2E-22 3.1E-26 135.0 12.6 86 87-175 12-97 (100)
27 1l3k_A Heterogeneous nuclear r 99.9 3.9E-22 1.3E-26 151.8 11.8 107 87-196 8-115 (196)
28 2cph_A RNA binding motif prote 99.9 1.2E-21 4.1E-26 135.9 13.2 89 87-177 10-100 (107)
29 1p27_B RNA-binding protein 8A; 99.9 6.6E-22 2.3E-26 137.1 11.8 85 88-174 19-103 (106)
30 3p5t_L Cleavage and polyadenyl 99.9 1E-22 3.5E-27 137.4 7.4 81 93-175 2-84 (90)
31 2la6_A RNA-binding protein FUS 99.9 8.4E-22 2.9E-26 135.0 12.1 82 89-172 10-99 (99)
32 2jrs_A RNA-binding protein 39; 99.9 7.6E-22 2.6E-26 137.6 12.0 87 86-174 20-106 (108)
33 3md1_A Nuclear and cytoplasmic 99.9 6.3E-22 2.1E-26 131.1 10.9 80 93-174 2-81 (83)
34 2e5h_A Zinc finger CCHC-type a 99.9 3.6E-22 1.2E-26 135.4 10.0 84 87-172 11-94 (94)
35 1fxl_A Paraneoplastic encephal 99.9 7.4E-22 2.5E-26 146.2 12.6 98 92-196 2-99 (167)
36 1b7f_A Protein (SXL-lethal pro 99.9 6.3E-22 2.1E-26 147.0 12.1 99 91-196 2-100 (168)
37 1x4h_A RNA-binding protein 28; 99.9 1.1E-21 3.8E-26 136.9 12.7 89 87-177 10-104 (111)
38 2fy1_A RNA-binding motif prote 99.9 1.2E-21 4E-26 138.4 12.7 85 88-175 3-87 (116)
39 2x1f_A MRNA 3'-END-processing 99.9 5.8E-22 2E-26 135.1 10.6 81 92-174 2-82 (96)
40 1x5t_A Splicing factor 3B subu 99.9 4.8E-22 1.6E-26 135.3 10.1 86 90-177 3-89 (96)
41 2cpf_A RNA binding motif prote 99.9 8.2E-22 2.8E-26 134.7 10.7 86 90-177 3-91 (98)
42 2khc_A Testis-specific RNP-typ 99.9 1.7E-21 5.9E-26 137.5 12.6 84 87-172 35-118 (118)
43 2cqd_A RNA-binding region cont 99.9 1.4E-21 4.7E-26 137.7 11.9 90 86-178 11-100 (116)
44 1oo0_B CG8781-PA, drosophila Y 99.9 6.6E-22 2.2E-26 138.0 10.2 86 88-175 22-107 (110)
45 2kxn_B Transformer-2 protein h 99.9 9.2E-22 3.2E-26 141.5 11.2 86 87-174 41-126 (129)
46 3ns6_A Eukaryotic translation 99.9 2.5E-22 8.7E-27 138.1 7.9 82 90-173 4-92 (100)
47 3n9u_C Cleavage and polyadenyl 99.9 6.4E-22 2.2E-26 146.8 10.5 83 89-173 52-136 (156)
48 2dhg_A TRNA selenocysteine ass 99.9 2.1E-21 7.2E-26 134.1 12.4 88 88-178 5-94 (104)
49 2d9p_A Polyadenylate-binding p 99.9 3.1E-21 1.1E-25 133.0 13.0 87 87-177 10-96 (103)
50 2ywk_A Putative RNA-binding pr 99.9 1.3E-21 4.5E-26 132.9 10.3 84 87-173 11-94 (95)
51 2cpe_A RNA-binding protein EWS 99.9 1.8E-21 6.1E-26 136.4 11.1 88 88-177 11-106 (113)
52 2cqi_A Nucleolysin TIAR; RNA r 99.9 4.3E-21 1.5E-25 132.3 12.9 88 87-178 10-97 (103)
53 2dng_A Eukaryotic translation 99.9 2.7E-21 9.1E-26 133.5 11.7 86 88-177 11-96 (103)
54 3nmr_A Cugbp ELAV-like family 99.9 2.5E-21 8.7E-26 144.5 12.5 102 91-196 2-106 (175)
55 3ex7_B RNA-binding protein 8A; 99.9 2.2E-21 7.5E-26 138.5 11.2 86 88-175 18-103 (126)
56 2dgv_A HnRNP M, heterogeneous 99.9 4.5E-21 1.5E-25 129.4 12.0 84 88-175 4-87 (92)
57 1wi8_A EIF-4B, eukaryotic tran 99.9 2.8E-21 9.5E-26 133.6 10.8 87 88-178 11-98 (104)
58 3md3_A Nuclear and cytoplasmic 99.9 2.9E-21 1E-25 142.8 11.6 98 93-196 1-98 (166)
59 1p1t_A Cleavage stimulation fa 99.9 8.2E-22 2.8E-26 136.1 8.0 85 89-175 5-89 (104)
60 3ulh_A THO complex subunit 4; 99.9 3.5E-21 1.2E-25 133.6 11.2 83 87-172 24-106 (107)
61 3s7r_A Heterogeneous nuclear r 99.9 2.9E-21 9.8E-26 129.2 10.3 82 87-171 6-87 (87)
62 2cq3_A RNA-binding protein 9; 99.9 9.6E-21 3.3E-25 130.6 13.2 88 86-177 9-96 (103)
63 2dh8_A DAZ-associated protein 99.9 2.1E-21 7.1E-26 134.4 9.9 88 86-176 10-97 (105)
64 2do0_A HnRNP M, heterogeneous 99.9 9.9E-21 3.4E-25 132.8 13.3 85 88-175 11-95 (114)
65 1x4e_A RNA binding motif, sing 99.9 4.6E-22 1.6E-26 132.5 5.9 82 90-173 3-84 (85)
66 4a8x_A RNA-binding protein wit 99.9 2.6E-21 8.9E-26 129.4 9.6 83 90-174 2-85 (88)
67 2cqp_A RNA-binding protein 12; 99.9 1.6E-21 5.5E-26 133.2 8.8 85 88-174 11-95 (98)
68 1h2v_Z 20 kDa nuclear CAP bind 99.9 5.8E-21 2E-25 141.3 12.4 87 88-176 35-121 (156)
69 2rs2_A Musashi-1, RNA-binding 99.9 2.1E-21 7.1E-26 135.6 9.2 87 87-176 20-106 (109)
70 3ucg_A Polyadenylate-binding p 99.9 3.9E-21 1.3E-25 128.9 10.1 81 91-174 5-85 (89)
71 2dgx_A KIAA0430 protein; RRM d 99.9 4.5E-21 1.6E-25 130.8 10.5 83 88-175 5-91 (96)
72 1sjq_A Polypyrimidine tract-bi 99.9 3.1E-21 1.1E-25 133.5 9.7 82 88-177 12-95 (105)
73 2dgw_A Probable RNA-binding pr 99.8 7.9E-21 2.7E-25 128.1 11.0 83 88-175 6-88 (91)
74 1x5o_A RNA binding motif, sing 99.8 1.4E-20 4.8E-25 132.1 12.7 86 88-174 21-112 (114)
75 2dis_A Unnamed protein product 99.8 8.9E-21 3.1E-25 132.0 11.4 86 89-176 5-94 (109)
76 1s79_A Lupus LA protein; RRM, 99.8 4.6E-21 1.6E-25 132.6 9.8 81 89-173 8-88 (103)
77 2kt5_A RNA and export factor-b 99.8 7.7E-21 2.6E-25 135.4 11.3 85 88-175 31-115 (124)
78 2qfj_A FBP-interacting repress 99.8 2.6E-21 8.9E-26 149.4 9.5 105 90-196 26-136 (216)
79 1x4a_A Splicing factor, argini 99.8 1.7E-20 5.7E-25 130.7 12.5 87 87-178 17-103 (109)
80 2ek1_A RNA-binding protein 12; 99.8 1.6E-21 5.4E-26 132.5 6.8 83 89-173 12-94 (95)
81 2cqg_A TDP-43, TAR DNA-binding 99.8 1.9E-20 6.4E-25 129.1 12.2 86 87-176 10-95 (103)
82 2kn4_A Immunoglobulin G-bindin 99.8 1.2E-20 4.2E-25 139.6 12.0 86 88-175 66-151 (158)
83 2mss_A Protein (musashi1); RNA 99.8 2.8E-21 9.7E-26 125.6 7.5 75 94-171 1-75 (75)
84 2j76_E EIF-4B, EIF4B, eukaryot 99.8 2.1E-21 7.2E-26 133.4 6.9 82 89-174 16-98 (100)
85 2lea_A Serine/arginine-rich sp 99.8 3E-21 1E-25 139.8 8.1 86 88-175 43-128 (135)
86 2err_A Ataxin-2-binding protei 99.8 6.4E-21 2.2E-25 133.1 9.3 85 86-174 23-107 (109)
87 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 7.1E-21 2.4E-25 138.0 9.9 84 86-171 57-140 (140)
88 1wex_A Hypothetical protein (r 99.8 2.7E-20 9.3E-25 128.9 12.4 85 88-178 11-95 (104)
89 2cq4_A RNA binding motif prote 99.8 3.6E-21 1.2E-25 135.1 7.9 83 89-174 22-104 (114)
90 2jwn_A Embryonic polyadenylate 99.8 1.1E-20 3.7E-25 134.6 10.3 83 90-175 34-116 (124)
91 2ki2_A SS-DNA binding protein 99.8 1.4E-21 4.9E-26 131.5 5.2 80 93-175 2-81 (90)
92 1x4b_A Heterogeneous nuclear r 99.8 1E-20 3.6E-25 133.2 9.4 86 90-178 25-110 (116)
93 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.7E-20 5.6E-25 140.2 11.0 88 88-177 68-155 (165)
94 3q2s_C Cleavage and polyadenyl 99.8 7.5E-21 2.6E-25 149.4 9.5 81 91-173 67-149 (229)
95 3tyt_A Heterogeneous nuclear r 99.8 2.3E-20 7.9E-25 144.2 11.9 77 90-173 2-79 (205)
96 1uaw_A Mouse-musashi-1; RNP-ty 99.8 4.3E-21 1.5E-25 125.3 6.5 76 93-171 1-76 (77)
97 2dnq_A RNA-binding protein 4B; 99.8 7E-20 2.4E-24 123.2 12.6 80 88-177 4-83 (90)
98 1wez_A HnRNP H', FTP-3, hetero 99.8 1.7E-20 5.8E-25 129.5 9.8 83 88-175 11-93 (102)
99 3r27_A HnRNP L, heterogeneous 99.8 1.5E-20 5.3E-25 128.8 9.4 81 88-174 17-97 (100)
100 1x4d_A Matrin 3; structural ge 99.8 1.2E-20 4.1E-25 130.2 8.6 82 88-175 11-93 (102)
101 3pgw_A U1-A; protein-RNA compl 99.8 6E-20 2.1E-24 147.6 13.8 83 88-175 5-91 (282)
102 2a3j_A U1 small nuclear ribonu 99.8 4.5E-20 1.5E-24 132.2 11.6 83 88-175 25-111 (127)
103 1wg5_A Heterogeneous nuclear r 99.8 3E-20 1E-24 128.6 10.2 83 88-174 11-94 (104)
104 2fc8_A NCL protein; structure 99.8 4.2E-20 1.4E-24 127.0 10.7 85 88-177 11-95 (102)
105 1why_A Hypothetical protein ri 99.8 1E-19 3.4E-24 124.1 12.4 82 88-175 13-94 (97)
106 1fj7_A Nucleolin RBD1, protein 99.8 4.2E-21 1.4E-25 131.9 5.5 84 88-175 13-96 (101)
107 1sjr_A Polypyrimidine tract-bi 99.8 7.2E-20 2.5E-24 135.9 12.4 82 90-175 44-125 (164)
108 1x4c_A Splicing factor, argini 99.8 9.3E-20 3.2E-24 126.9 12.1 82 89-177 12-96 (108)
109 2fc9_A NCL protein; structure 99.8 4.2E-20 1.4E-24 126.9 10.1 85 87-177 10-94 (101)
110 2ad9_A Polypyrimidine tract-bi 99.8 2.9E-20 9.8E-25 131.5 9.4 83 88-178 27-111 (119)
111 2cpi_A CCR4-NOT transcription 99.8 2.5E-20 8.6E-25 130.4 9.0 86 88-175 11-102 (111)
112 2adc_A Polypyrimidine tract-bi 99.8 9.7E-20 3.3E-24 142.7 13.0 80 88-174 30-110 (229)
113 2nlw_A Eukaryotic translation 99.8 2.8E-20 9.5E-25 128.9 8.6 82 88-173 11-99 (105)
114 2cpy_A RNA-binding protein 12; 99.8 1.3E-20 4.6E-25 132.4 7.0 83 88-174 11-94 (114)
115 2cq1_A PTB-like protein L; RRM 99.8 5.2E-20 1.8E-24 126.8 9.8 82 88-177 11-94 (101)
116 2db1_A Heterogeneous nuclear r 99.8 2.1E-20 7.1E-25 132.3 8.0 82 88-173 13-97 (118)
117 2dgu_A Heterogeneous nuclear r 99.8 1.3E-19 4.6E-24 124.9 11.9 82 87-178 6-87 (103)
118 2cpx_A Hypothetical protein FL 99.8 1.8E-20 6E-25 131.7 7.5 88 88-177 21-108 (115)
119 2jvr_A Nucleolar protein 3; RN 99.8 2.3E-20 7.9E-25 130.7 7.9 84 88-177 24-108 (111)
120 2wbr_A GW182, gawky, LD47780P; 99.8 5.9E-20 2E-24 122.2 9.4 75 90-172 5-79 (89)
121 2la4_A Nuclear and cytoplasmic 99.8 2.4E-20 8.2E-25 128.1 7.7 78 88-173 23-100 (101)
122 1x4g_A Nucleolysin TIAR; struc 99.8 1.1E-19 3.7E-24 126.6 11.2 84 88-179 21-104 (109)
123 3smz_A Protein raver-1, ribonu 99.8 1.4E-19 4.7E-24 145.7 13.3 103 90-196 93-195 (284)
124 1wel_A RNA-binding protein 12; 99.8 1.5E-20 5E-25 134.1 6.8 82 89-173 22-103 (124)
125 2hgl_A HNRPF protein, heteroge 99.8 2.4E-20 8.1E-25 135.2 7.8 82 88-173 40-124 (136)
126 2cjk_A Nuclear polyadenylated 99.8 5.8E-21 2E-25 141.8 4.6 97 91-196 2-98 (167)
127 2ytc_A PRE-mRNA-splicing facto 99.8 7.9E-20 2.7E-24 121.5 9.5 78 87-172 7-85 (85)
128 2cpj_A Non-POU domain-containi 99.8 2E-19 6.8E-24 123.1 11.7 80 88-175 11-90 (99)
129 2lmi_A GRSF-1, G-rich sequence 99.8 1.7E-20 5.9E-25 130.4 6.5 83 87-173 6-91 (107)
130 2jvo_A Nucleolar protein 3; nu 99.8 8.9E-20 3E-24 127.1 9.6 80 87-176 26-105 (108)
131 2lcw_A RNA-binding protein FUS 99.7 1.1E-21 3.9E-26 138.2 0.0 89 89-179 4-100 (116)
132 1iqt_A AUF1, heterogeneous nuc 99.8 2E-20 6.9E-25 121.5 5.9 75 94-171 1-75 (75)
133 2dgt_A RNA-binding protein 30; 99.8 2.4E-19 8.1E-24 121.1 11.4 80 87-176 5-84 (92)
134 3lqv_A PRE-mRNA branch site pr 99.8 2E-19 6.8E-24 126.3 11.4 80 90-174 6-85 (115)
135 2dnp_A RNA-binding protein 14; 99.8 2.3E-19 8E-24 120.6 11.0 80 88-177 5-84 (90)
136 2e5j_A Methenyltetrahydrofolat 99.8 2.7E-19 9.4E-24 122.0 11.4 80 88-174 15-94 (97)
137 2krb_A Eukaryotic translation 99.8 3.7E-20 1.2E-24 122.3 6.5 73 92-168 1-80 (81)
138 2kvi_A Nuclear polyadenylated 99.8 1.5E-19 5.2E-24 123.1 9.7 80 88-177 6-86 (96)
139 2f3j_A RNA and export factor b 99.8 1.7E-19 6E-24 136.3 10.8 84 88-174 84-167 (177)
140 1fje_B Nucleolin RBD12, protei 99.8 1.1E-20 3.8E-25 141.5 4.1 102 88-196 9-110 (175)
141 1x4f_A Matrin 3; structural ge 99.8 7.7E-20 2.6E-24 128.0 7.9 80 89-174 22-102 (112)
142 1qm9_A Polypyrimidine tract-bi 99.8 2.7E-19 9.3E-24 136.6 11.1 77 91-174 2-79 (198)
143 2xs2_A Deleted in azoospermia- 99.8 4.7E-20 1.6E-24 126.9 6.1 82 88-174 5-86 (102)
144 2xnq_A Nuclear polyadenylated 99.8 4.2E-19 1.4E-23 121.3 10.7 77 88-174 18-95 (97)
145 1nu4_A U1A RNA binding domain; 99.8 1.2E-19 4E-24 123.6 7.8 83 88-175 4-90 (97)
146 1whx_A Hypothetical protein ri 99.8 1.7E-19 5.8E-24 126.3 8.7 78 90-175 8-85 (111)
147 3zzy_A Polypyrimidine tract-bi 99.8 3.3E-19 1.1E-23 127.7 10.1 83 89-176 25-108 (130)
148 2i2y_A Fusion protein consists 99.8 5.1E-19 1.7E-23 130.0 11.0 80 88-174 69-148 (150)
149 2cpd_A Apobec-1 stimulating pr 99.8 1.4E-18 4.8E-23 118.8 12.3 80 88-177 11-92 (99)
150 1fjc_A Nucleolin RBD2, protein 99.8 1.2E-19 4E-24 123.4 6.6 81 88-175 12-92 (96)
151 2dnn_A RNA-binding protein 12; 99.8 1.8E-19 6E-24 125.8 7.4 79 90-173 14-92 (109)
152 1wf1_A RNA-binding protein RAL 99.8 9.1E-19 3.1E-23 122.1 10.9 76 90-175 25-101 (110)
153 3md3_A Nuclear and cytoplasmic 99.8 9.6E-19 3.3E-23 129.2 11.7 84 88-173 83-166 (166)
154 2e5g_A U6 snRNA-specific termi 99.8 9.3E-19 3.2E-23 118.7 10.3 79 89-175 5-83 (94)
155 2cqh_A IGF-II mRNA-binding pro 99.8 6.9E-19 2.3E-23 119.0 9.5 81 88-177 4-86 (93)
156 2e5i_A Heterogeneous nuclear r 99.8 2E-18 7E-23 122.9 12.2 78 92-175 25-103 (124)
157 3egn_A RNA-binding protein 40; 99.8 7.2E-20 2.5E-24 133.5 4.7 86 88-175 41-131 (143)
158 2qfj_A FBP-interacting repress 99.8 1.8E-18 6.2E-23 133.3 12.8 86 90-177 123-208 (216)
159 2hgn_A Heterogeneous nuclear r 99.8 1E-19 3.5E-24 132.3 5.1 83 88-175 42-124 (139)
160 2hgm_A HNRPF protein, heteroge 99.8 3.3E-19 1.1E-23 127.4 7.7 81 88-173 38-120 (126)
161 2e44_A Insulin-like growth fac 99.8 1E-18 3.6E-23 118.7 9.8 79 90-174 13-92 (96)
162 2j8a_A Histone-lysine N-methyl 99.8 2.7E-19 9.2E-24 126.8 7.1 80 93-174 3-96 (136)
163 1b7f_A Protein (SXL-lethal pro 99.8 2.7E-18 9.2E-23 127.3 12.7 83 89-171 86-168 (168)
164 2ghp_A U4/U6 snRNA-associated 99.8 6.8E-19 2.3E-23 142.1 10.0 103 91-196 116-221 (292)
165 3d2w_A TAR DNA-binding protein 99.8 5.5E-19 1.9E-23 118.9 7.9 78 88-174 7-84 (89)
166 3sde_A Paraspeckle component 1 99.8 1.3E-18 4.5E-23 138.8 11.0 90 88-196 18-107 (261)
167 1x5p_A Negative elongation fac 99.8 4.1E-18 1.4E-22 116.1 11.6 80 88-177 11-90 (97)
168 1fxl_A Paraneoplastic encephal 99.8 3.5E-18 1.2E-22 126.3 12.0 82 90-171 86-167 (167)
169 2dha_A FLJ20171 protein; RRM d 99.8 4.1E-19 1.4E-23 126.5 6.7 80 90-173 21-104 (123)
170 2g4b_A Splicing factor U2AF 65 99.8 2.4E-18 8E-23 128.2 10.8 81 90-172 92-172 (172)
171 2cq2_A Hypothetical protein LO 99.8 1.5E-18 5.2E-23 121.6 9.0 82 88-175 21-107 (114)
172 3pgw_S U1-70K; protein-RNA com 99.8 1.8E-18 6.3E-23 147.4 11.3 83 90-174 100-182 (437)
173 2diu_A KIAA0430 protein; struc 99.8 8.6E-18 2.9E-22 112.8 11.9 75 90-176 6-86 (96)
174 2yh0_A Splicing factor U2AF 65 99.8 3.9E-18 1.3E-22 129.7 11.7 84 89-174 111-194 (198)
175 1wg1_A KIAA1579 protein, homol 99.8 1.1E-18 3.9E-23 116.9 7.6 76 90-174 3-78 (88)
176 3beg_B Splicing factor, argini 99.8 2.8E-18 9.6E-23 120.7 9.7 76 90-174 14-94 (115)
177 4f02_A Polyadenylate-binding p 99.8 4.2E-19 1.4E-23 137.6 5.9 80 91-174 102-181 (213)
178 2g4b_A Splicing factor U2AF 65 99.8 3.7E-18 1.3E-22 127.1 10.5 92 91-196 3-105 (172)
179 2yh0_A Splicing factor U2AF 65 99.8 4.7E-18 1.6E-22 129.3 10.8 98 90-196 2-125 (198)
180 2dnl_A Cytoplasmic polyadenyla 99.8 3.5E-18 1.2E-22 120.0 9.3 65 89-154 5-72 (114)
181 2ghp_A U4/U6 snRNA-associated 99.8 3.7E-18 1.3E-22 137.8 10.3 92 88-196 37-128 (292)
182 3nmr_A Cugbp ELAV-like family 99.8 9.7E-18 3.3E-22 124.9 11.8 83 89-172 92-175 (175)
183 2cjk_A Nuclear polyadenylated 99.7 2.5E-18 8.7E-23 127.4 8.1 81 91-174 86-166 (167)
184 1l3k_A Heterogeneous nuclear r 99.7 5.4E-18 1.9E-22 128.7 10.0 86 89-177 101-186 (196)
185 3smz_A Protein raver-1, ribonu 99.7 7.6E-18 2.6E-22 135.4 10.9 87 90-196 20-106 (284)
186 1wf0_A TDP-43, TAR DNA-binding 99.7 4.2E-18 1.4E-22 114.0 7.3 79 90-177 3-81 (88)
187 2bz2_A Negative elongation fac 99.7 1.3E-17 4.3E-22 118.5 10.1 78 88-175 35-112 (121)
188 2hzc_A Splicing factor U2AF 65 99.7 1E-17 3.5E-22 111.6 7.8 73 89-170 3-86 (87)
189 3pgw_A U1-A; protein-RNA compl 99.7 1.2E-16 4.2E-21 128.2 15.3 81 87-173 202-282 (282)
190 2pe8_A Splicing factor 45; RRM 99.7 4.6E-17 1.6E-21 112.7 10.3 82 90-173 6-93 (105)
191 3u1l_A PRE-mRNA-splicing facto 99.7 3.1E-17 1.1E-21 129.0 9.2 82 88-175 130-230 (240)
192 2voo_A Lupus LA protein; RNA-b 99.7 5.1E-17 1.8E-21 124.3 9.8 81 91-175 108-188 (193)
193 1fje_B Nucleolin RBD12, protei 99.7 9E-17 3.1E-21 120.1 8.0 79 89-174 96-174 (175)
194 2dit_A HIV TAT specific factor 99.6 1.8E-15 6.2E-20 105.7 11.0 82 88-175 11-103 (112)
195 3tyt_A Heterogeneous nuclear r 99.6 4.1E-16 1.4E-20 120.3 8.4 80 90-171 121-204 (205)
196 3sde_A Paraspeckle component 1 99.6 1E-15 3.4E-20 122.0 9.8 83 91-174 95-179 (261)
197 1qm9_A Polypyrimidine tract-bi 99.6 1.3E-15 4.5E-20 116.0 9.4 79 90-174 118-197 (198)
198 2adc_A Polypyrimidine tract-bi 99.6 4E-15 1.4E-19 116.3 11.5 79 90-174 149-228 (229)
199 2d9o_A DNAJ (HSP40) homolog, s 99.6 1.7E-14 5.8E-19 98.8 12.7 81 88-177 6-93 (100)
200 3v4m_A Splicing factor U2AF 65 99.6 2.2E-15 7.6E-20 104.2 8.4 82 90-173 3-96 (105)
201 1jmt_A Splicing factor U2AF 35 99.6 4.1E-16 1.4E-20 107.8 3.9 72 97-171 20-103 (104)
202 3ue2_A Poly(U)-binding-splicin 99.6 4.2E-15 1.4E-19 104.9 8.4 81 91-173 19-108 (118)
203 3tht_A Alkylated DNA repair pr 99.6 7.9E-15 2.7E-19 121.0 9.2 79 88-172 14-97 (345)
204 3s6e_A RNA-binding protein 39; 99.4 6.5E-13 2.2E-17 93.0 8.3 77 91-173 6-92 (114)
205 1owx_A Lupus LA protein, SS-B, 99.4 7.7E-12 2.6E-16 88.1 10.5 79 88-172 14-94 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.3 1.4E-11 4.7E-16 81.9 8.4 75 90-175 5-87 (91)
207 3dxb_A Thioredoxin N-terminall 99.2 1.3E-10 4.4E-15 90.1 8.9 67 104-172 141-211 (222)
208 1ufw_A Synaptojanin 2; RNP dom 99.1 1.1E-10 3.7E-15 78.0 6.3 73 89-172 12-93 (95)
209 2l9w_A U4/U6 snRNA-associated- 98.7 6.7E-08 2.3E-12 65.9 8.2 73 90-170 19-96 (117)
210 2kn4_A Immunoglobulin G-bindin 98.5 2.5E-07 8.4E-12 67.6 7.6 74 121-196 2-81 (158)
211 2i2y_A Fusion protein consists 98.4 5.5E-07 1.9E-11 65.3 5.6 63 131-196 10-84 (150)
212 2dhx_A Poly (ADP-ribose) polym 98.2 1.7E-05 5.8E-10 53.5 10.3 89 88-196 4-97 (104)
213 1uw4_A UPF3X; nonsense mediate 98.1 1.8E-05 6.2E-10 52.5 7.8 80 93-172 2-86 (91)
214 1whv_A Poly(A)-specific ribonu 97.9 4.4E-05 1.5E-09 50.9 7.6 56 91-155 15-70 (100)
215 1wey_A Calcipressin 1; structu 97.9 3.1E-05 1E-09 52.4 5.9 77 90-174 3-84 (104)
216 3ctr_A Poly(A)-specific ribonu 97.8 5E-05 1.7E-09 50.8 5.5 53 94-155 8-60 (101)
217 1wwh_A Nucleoporin 35, nucleop 97.4 0.0006 2.1E-08 47.3 7.7 73 89-170 21-93 (119)
218 2l08_A Regulator of nonsense t 97.4 0.00013 4.4E-09 48.8 3.6 81 92-172 9-94 (97)
219 3pq1_A Poly(A) RNA polymerase; 97.1 0.00024 8.3E-09 60.5 3.4 55 92-152 53-107 (464)
220 2lea_A Serine/arginine-rich sp 95.8 0.0033 1.1E-07 44.4 1.9 54 135-196 5-58 (135)
221 3p3d_A Nucleoporin 53; structu 95.8 0.011 3.7E-07 41.6 4.3 77 92-172 7-97 (132)
222 1rk8_A CG8781-PA, CG8781-PA pr 95.5 0.0059 2E-07 44.4 2.1 58 139-196 11-83 (165)
223 3d45_A Poly(A)-specific ribonu 94.8 0.12 4E-06 44.6 8.6 56 92-156 440-495 (507)
224 3pgw_S U1-70K; protein-RNA com 93.7 0.0038 1.3E-07 52.9 -3.0 15 109-123 9-23 (437)
225 2g0c_A ATP-dependent RNA helic 89.2 1.5 5.3E-05 27.0 6.4 68 94-172 2-75 (76)
226 2hgn_A Heterogeneous nuclear r 86.8 0.26 8.8E-06 34.8 1.7 56 135-196 2-57 (139)
227 1wf1_A RNA-binding protein RAL 81.7 0.94 3.2E-05 29.9 2.7 32 163-196 7-38 (110)
228 2hgl_A HNRPF protein, heteroge 80.5 1.1 3.7E-05 31.4 2.7 15 182-196 41-55 (136)
229 2ad9_A Polypyrimidine tract-bi 77.8 1.5 5.3E-05 29.9 2.7 15 182-196 28-42 (119)
230 4e8u_A Putative uncharacterize 71.7 6.8 0.00023 28.6 5.0 46 104-152 33-81 (172)
231 2err_A Ataxin-2-binding protei 70.9 2.6 9E-05 27.7 2.5 16 181-196 25-40 (109)
232 2kt5_A RNA and export factor-b 70.3 3.7 0.00013 27.5 3.2 17 180-196 30-46 (124)
233 2hgm_A HNRPF protein, heteroge 69.9 2.7 9.2E-05 28.9 2.4 15 182-196 39-53 (126)
234 4f25_A Polyadenylate-binding p 69.8 0.93 3.2E-05 30.4 0.0 19 90-108 95-113 (115)
235 2khc_A Testis-specific RNP-typ 69.1 3.9 0.00013 27.1 3.1 17 180-196 35-51 (118)
236 2ku7_A MLL1 PHD3-CYP33 RRM chi 68.3 3.9 0.00013 27.8 3.0 17 180-196 58-74 (140)
237 2kxn_B Transformer-2 protein h 61.9 4 0.00014 27.9 2.0 17 180-196 41-57 (129)
238 3fry_A Probable copper-exporti 60.4 23 0.00079 20.8 5.4 55 92-153 6-60 (73)
239 4eyt_A Telomerase associated p 51.5 46 0.0016 21.5 8.4 60 89-156 9-68 (129)
240 1xn9_A 30S ribosomal protein S 51.1 49 0.0017 21.7 6.1 48 102-150 28-80 (101)
241 3h7h_B Transcription elongatio 49.7 35 0.0012 22.6 5.0 35 118-157 40-74 (106)
242 4a4j_A Pacszia, cation-transpo 48.9 35 0.0012 19.4 4.6 55 93-153 4-61 (69)
243 3mfb_A Uncharacterized protein 47.4 33 0.0011 24.5 4.9 37 104-140 3-42 (157)
244 1ywx_A 30S ribosomal protein S 46.6 60 0.002 21.4 5.8 47 102-149 28-79 (102)
245 2v94_A RPS24, 30S ribosomal pr 46.4 53 0.0018 21.8 5.5 46 103-149 38-88 (107)
246 3lpe_A Putative transcription 46.1 55 0.0019 20.8 5.5 34 118-156 39-72 (92)
247 2g1d_A 30S ribosomal protein S 44.5 13 0.00044 24.4 2.2 45 103-148 30-79 (98)
248 2i9x_A Putative septation prot 42.8 36 0.0012 21.8 4.0 26 118-143 5-30 (87)
249 2xzm_P RPS24E; ribosome, trans 42.5 24 0.00083 25.0 3.5 47 102-149 31-82 (149)
250 3ts2_A Protein LIN-28 homolog 38.8 4.3 0.00015 28.8 -0.9 27 108-142 3-29 (148)
251 4a8j_B Elongator complex prote 38.6 1.1E+02 0.0039 23.7 6.9 47 93-139 167-221 (270)
252 2ia9_A Putative septation prot 37.9 46 0.0016 21.9 4.0 26 118-143 5-30 (100)
253 2i9z_A Putative septation prot 37.7 47 0.0016 22.0 4.1 26 118-143 5-30 (105)
254 1tr0_A Stable protein 1; plant 33.0 98 0.0034 19.9 5.8 55 94-148 11-78 (108)
255 2lfv_A Protein DAMX; cell divi 39.0 9.2 0.00032 25.5 0.0 62 90-156 23-86 (106)
256 3u5c_Y RP50, 40S ribosomal pro 32.7 1.2E+02 0.0042 20.9 6.1 46 103-149 34-84 (135)
257 2qyc_A Ferredoxin-like protein 32.4 98 0.0034 19.7 6.2 50 98-148 11-70 (103)
258 3dxs_X Copper-transporting ATP 32.3 73 0.0025 18.2 6.4 55 93-153 4-62 (74)
259 2ki0_A DS119; beta-alpha-beta, 32.3 23 0.0008 17.8 1.5 19 90-113 3-21 (36)
260 3fut_A Dimethyladenosine trans 32.2 49 0.0017 25.6 4.1 33 92-125 110-142 (271)
261 1q4r_A Protein AT3G17210; cent 30.7 1.1E+02 0.0038 19.8 6.3 57 93-149 12-79 (112)
262 2exu_A Transcription initiatio 30.5 72 0.0024 23.7 4.6 25 133-157 148-172 (200)
263 1fme_A FSD-EY peptide; beta-BE 30.1 34 0.0012 16.2 1.8 12 105-116 14-25 (28)
264 2gu3_A YPMB protein; APC1927, 28.5 70 0.0024 22.0 4.0 47 97-143 68-127 (136)
265 2g9o_A Copper-transporting ATP 27.7 89 0.0031 19.0 4.2 55 93-153 5-63 (90)
266 2kpo_A Rossmann 2X2 fold prote 25.5 47 0.0016 20.8 2.3 44 104-160 33-77 (110)
267 1yg0_A COP associated protein; 24.9 89 0.0031 16.8 6.0 54 94-153 4-60 (66)
268 3ced_A Methionine import ATP-b 24.6 1.2E+02 0.0041 19.3 4.4 62 94-157 22-88 (98)
269 3bgu_A Ferredoxin-like protein 24.6 1.5E+02 0.0053 19.4 7.0 56 92-148 22-87 (116)
270 3uzu_A Ribosomal RNA small sub 24.5 28 0.00096 27.1 1.5 33 93-125 115-147 (279)
271 1i4w_A Mitochondrial replicati 24.3 46 0.0016 27.0 2.7 23 93-115 143-165 (353)
272 3bb5_A Stress responsive alpha 23.6 1.6E+02 0.0056 19.4 7.9 58 92-149 21-89 (121)
273 1q8l_A Copper-transporting ATP 23.3 1.2E+02 0.0041 17.8 7.8 56 92-153 10-69 (84)
274 2f9f_A First mannosyl transfer 22.9 1.9E+02 0.0064 19.8 6.9 64 89-153 21-97 (177)
275 3j21_T 50S ribosomal protein L 22.8 1.5E+02 0.0052 18.7 5.8 54 96-152 26-81 (86)
276 4bby_A Alkyldihydroxyacetoneph 22.7 75 0.0026 27.9 4.0 57 99-156 350-410 (658)
277 2okq_A Hypothetical protein YB 22.0 2.1E+02 0.007 19.9 6.2 45 109-153 50-109 (141)
278 1rjj_A Expressed protein; beta 21.9 1.7E+02 0.0057 18.8 5.8 51 99-149 13-72 (111)
279 1kvi_A Copper-transporting ATP 21.5 1.2E+02 0.0042 17.2 7.4 58 91-154 8-69 (79)
280 2xmw_A PACS-N, cation-transpor 21.4 1.1E+02 0.0038 16.7 6.5 54 94-153 6-62 (71)
281 2kt2_A Mercuric reductase; nme 20.9 1.2E+02 0.004 16.6 5.1 53 94-152 3-58 (69)
282 3ftd_A Dimethyladenosine trans 20.8 60 0.002 24.6 2.7 29 93-121 96-124 (249)
283 2ew9_A Copper-transporting ATP 20.7 1.9E+02 0.0063 18.9 5.6 55 93-153 82-140 (149)
284 3d53_A Inorganic pyrophosphata 20.3 2.1E+02 0.0072 20.6 5.3 36 107-153 133-168 (173)
285 3swz_A Steroid 17-alpha-hydrox 20.3 1.6E+02 0.0053 24.0 5.4 50 95-153 17-70 (494)
No 1
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.93 E-value=1.1e-25 Score=158.92 Aligned_cols=102 Identities=22% Similarity=0.389 Sum_probs=74.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNW 170 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~ 170 (196)
...+|||+||++++++++|+++|+.||.|.+|+|++|+ +.++|||||+|.+.++|++||+.|+|..|. |+.|+|+|
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~--g~~i~V~~ 79 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLN--DRKVFVGR 79 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEET--TEECEEEE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEEC--CEEEEEEE
Confidence 35689999999999999999999999999999999996 458999999999999999999999999995 69999999
Q ss_pred ccCCCCCCC---CCCCCCceEEecCCCCC
Q 037458 171 ATFSTGDKR---SDNGPDLSIFVGDLAAD 196 (196)
Q Consensus 171 a~~~~~~~~---~~~~~~~~ifV~nL~~d 196 (196)
++....... .......+|||+||+++
T Consensus 80 a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~ 108 (115)
T 4f25_A 80 FKSRKEREAELGARAKEFTNVYIKNFGPG 108 (115)
T ss_dssp SSCCCC-----------------------
T ss_pred CCCccccccccccccCCCCceEeCCCCCC
Confidence 976543222 22344568999999975
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.92 E-value=1.6e-24 Score=148.98 Aligned_cols=82 Identities=30% Similarity=0.510 Sum_probs=78.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEE
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLN 169 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~ 169 (196)
...++|||+|||.++|+++|+++|+.||.|.+|++++|+.+|+++|||||+|.+.++|++|++.|||..|. |+.|+|+
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~--gr~l~V~ 94 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQ--SKTIKVS 94 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEEC--CEEEEEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999995 6999999
Q ss_pred eccC
Q 037458 170 WATF 173 (196)
Q Consensus 170 ~a~~ 173 (196)
||++
T Consensus 95 ~AkP 98 (99)
T 4fxv_A 95 YARP 98 (99)
T ss_dssp ECCB
T ss_pred EeeC
Confidence 9975
No 3
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.90 E-value=1.8e-22 Score=146.61 Aligned_cols=89 Identities=21% Similarity=0.368 Sum_probs=82.4
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 87 SGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 87 ~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
......++|||+||+.++++++|+++|+.||.|++|+|++++.+++++|||||+|.+.++|++|++.|||..|. ++.|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l 114 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNIL--NKRL 114 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECS--SCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC--CeEE
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999995 6999
Q ss_pred EEEeccCCCCC
Q 037458 167 RLNWATFSTGD 177 (196)
Q Consensus 167 ~v~~a~~~~~~ 177 (196)
+|+|++....+
T Consensus 115 ~v~~a~~~~~~ 125 (139)
T 1u6f_A 115 KVALAASGHQR 125 (139)
T ss_dssp EEEESSCCCCC
T ss_pred EEEECCCCCCC
Confidence 99999876544
No 4
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.90 E-value=3.1e-23 Score=145.27 Aligned_cols=83 Identities=13% Similarity=0.143 Sum_probs=78.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEE
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLN 169 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~ 169 (196)
.+.++|||+||++++++++|+++|++||.|.+|+|++|+.|++++|||||+|.+.++|++|++.|||..|. |+.|+|+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~--gr~i~V~ 81 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVM--GNIIHAQ 81 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEEC--CeEEEEE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999995 6999999
Q ss_pred eccCC
Q 037458 170 WATFS 174 (196)
Q Consensus 170 ~a~~~ 174 (196)
++...
T Consensus 82 ~a~~~ 86 (110)
T 3s8s_A 82 LDIKG 86 (110)
T ss_dssp ECSTT
T ss_pred ECCCC
Confidence 99764
No 5
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.89 E-value=4.5e-23 Score=141.84 Aligned_cols=95 Identities=22% Similarity=0.322 Sum_probs=82.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEecc
Q 037458 93 KTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWAT 172 (196)
Q Consensus 93 ~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~a~ 172 (196)
++|||+||+.++++++|+++|+.||.|.+|.++++ ++|||||+|.+.++|++|++.|+|..+. |+.|+|+|++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~V~~a~ 73 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVIC--GSRVRVELST 73 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSS--SCCCEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeEC--CcEEEEEEcc
Confidence 48999999999999999999999999999999887 5699999999999999999999999995 6899999998
Q ss_pred CCCCCCCC-----CCCCCceEEecCCC
Q 037458 173 FSTGDKRS-----DNGPDLSIFVGDLA 194 (196)
Q Consensus 173 ~~~~~~~~-----~~~~~~~ifV~nL~ 194 (196)
......+. ......+||||||+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 74 GMPRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp SCCCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCCCcccCCCCCccccCCCceecCCCC
Confidence 76543331 12336789999997
No 6
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.89 E-value=3e-23 Score=161.07 Aligned_cols=102 Identities=29% Similarity=0.453 Sum_probs=89.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEE
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLN 169 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~ 169 (196)
.+.++||||||++++|+++|+++|+.||.|++|+|++|+.|++++|||||+|.+.++|++||+.+++..+. ++.|++.
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~--g~~i~~~ 90 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIK--GKPVRIM 90 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcC--Ccccccc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999995 6999999
Q ss_pred eccCCCCCCCCCCCCCceEEecCCCCC
Q 037458 170 WATFSTGDKRSDNGPDLSIFVGDLAAD 196 (196)
Q Consensus 170 ~a~~~~~~~~~~~~~~~~ifV~nL~~d 196 (196)
++........ ....+|||+||+++
T Consensus 91 ~~~~~~~~~~---~~~~~l~v~nl~~~ 114 (213)
T 4f02_A 91 WSQRDPSLRK---SGVGNIFIKNLDKS 114 (213)
T ss_dssp ECCCCTHHHH---HCTTEEEEESCCTT
T ss_pred cccccccccc---cccccceECCcccc
Confidence 9875432222 24568999999974
No 7
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.7e-22 Score=139.08 Aligned_cols=91 Identities=22% Similarity=0.412 Sum_probs=83.2
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 87 SGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 87 ~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
....+.++|||+||+.++++++|+++|+.||.|.+|+|++++.++.++|||||+|.+.++|++|++.||+..|. ++.|
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l 84 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVD--GRQI 84 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTT--SCCC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC--CeEE
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999995 6999
Q ss_pred EEEeccCCCCCCC
Q 037458 167 RLNWATFSTGDKR 179 (196)
Q Consensus 167 ~v~~a~~~~~~~~ 179 (196)
+|+|++.....++
T Consensus 85 ~v~~a~~~~~~~~ 97 (102)
T 1x5s_A 85 RVDQAGKSSDNRS 97 (102)
T ss_dssp EEEEEECCCCCCC
T ss_pred EEEECCCCCCCCC
Confidence 9999987654433
No 8
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=3e-22 Score=137.24 Aligned_cols=88 Identities=18% Similarity=0.346 Sum_probs=80.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 87 SGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 87 ~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
......++|||+||+.++++++|+++|+.||.|.+|.|++++.+++++|||||+|.+.++|++|++ |++..|. ++.|
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~--g~~l 81 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIM--GKKV 81 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSS--SCBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEEC--CeEE
Confidence 345678999999999999999999999999999999999999999999999999999999999998 9999995 6999
Q ss_pred EEEeccCCCCC
Q 037458 167 RLNWATFSTGD 177 (196)
Q Consensus 167 ~v~~a~~~~~~ 177 (196)
+|.|++.....
T Consensus 82 ~V~~a~~~~~~ 92 (99)
T 2dgs_A 82 EVKRAEPRDSK 92 (99)
T ss_dssp EEEECCCCCCC
T ss_pred EEEECCCCccc
Confidence 99999865443
No 9
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.89 E-value=2.6e-23 Score=141.87 Aligned_cols=84 Identities=18% Similarity=0.319 Sum_probs=77.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCC--eeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCC----CCC
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGE--IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSIL----MPN 161 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~--i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~----~~~ 161 (196)
....-.||||+||++++|+++|+++|+.||. |.+|++++|+.||+++|||||+|.+.++|++|++.|||.. |
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i-- 82 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKI-- 82 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEE--
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceE--
Confidence 4467789999999999999999999999995 6799999999999999999999999999999999999974 5
Q ss_pred CCccEEEEeccC
Q 037458 162 TDQPFRLNWATF 173 (196)
Q Consensus 162 ~~~~i~v~~a~~ 173 (196)
.|+.|+|+||+.
T Consensus 83 ~Gr~i~V~~Aks 94 (95)
T 2lkz_A 83 DGKTIGVDFAKS 94 (95)
T ss_dssp TTEEEEEEECCC
T ss_pred CCEEEEEEEccC
Confidence 479999999985
No 10
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.89 E-value=3.3e-22 Score=140.67 Aligned_cols=91 Identities=30% Similarity=0.532 Sum_probs=83.2
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 87 SGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 87 ~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
......++|||+||+.++++++|+++|+.||.|.+|+|++++.++.++|||||+|.+.++|++||+.|+|..|. ++.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l 87 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG--GRQI 87 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEET--TEEC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC--CEEE
Confidence 35567899999999999999999999999999999999999989999999999999999999999999999995 6999
Q ss_pred EEEeccCCCCCCC
Q 037458 167 RLNWATFSTGDKR 179 (196)
Q Consensus 167 ~v~~a~~~~~~~~ 179 (196)
+|+|++......+
T Consensus 88 ~V~~a~~~~~~~~ 100 (115)
T 2dgo_A 88 RTNWATRKPPAPK 100 (115)
T ss_dssp EEEESSCCCCCSC
T ss_pred EEEEccCCCCCCc
Confidence 9999987654433
No 11
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=3.1e-22 Score=138.54 Aligned_cols=89 Identities=27% Similarity=0.505 Sum_probs=82.1
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 87 SGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 87 ~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
......++|||+||+.++++++|+++|+.||.|.+|.+++++.++.++|||||+|.+.++|++|++.|++..|. ++.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l 87 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLY--GKPI 87 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCS--SCBC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeEC--CeEE
Confidence 35567899999999999999999999999999999999999999999999999999999999999999999995 6999
Q ss_pred EEEeccCCCCC
Q 037458 167 RLNWATFSTGD 177 (196)
Q Consensus 167 ~v~~a~~~~~~ 177 (196)
+|+|++.....
T Consensus 88 ~v~~a~~~~~~ 98 (105)
T 1x5u_A 88 RVNKASAHNKN 98 (105)
T ss_dssp EEEETTTTSCC
T ss_pred EEEECCCCCcC
Confidence 99999876443
No 12
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=4.7e-22 Score=135.12 Aligned_cols=86 Identities=27% Similarity=0.536 Sum_probs=80.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEE
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLN 169 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~ 169 (196)
...++|||+||+.++++++|+++|+.||.|.+|.+++++.+++++|||||+|.+.++|++|++.|||..|. ++.|+|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~V~ 80 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELA--GRPMRVG 80 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSS--SSCCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeC--CcEEEEE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999995 6999999
Q ss_pred eccCCCCC
Q 037458 170 WATFSTGD 177 (196)
Q Consensus 170 ~a~~~~~~ 177 (196)
|++.....
T Consensus 81 ~a~~~~~~ 88 (95)
T 2dnz_A 81 HVTERLDG 88 (95)
T ss_dssp ESSCCCCC
T ss_pred EcccccCC
Confidence 99866443
No 13
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.89 E-value=2.8e-22 Score=137.28 Aligned_cols=88 Identities=17% Similarity=0.254 Sum_probs=81.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
...+.++|||+||+.++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|++|++.|||..|. ++.|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~ 81 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQ--GRMLH 81 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESS--SCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEEC--CcEEE
Confidence 4567899999999999999999999999999999999999989999999999999999999999999999995 69999
Q ss_pred EEeccCCCCC
Q 037458 168 LNWATFSTGD 177 (196)
Q Consensus 168 v~~a~~~~~~ 177 (196)
|+|++.....
T Consensus 82 V~~a~~~~~~ 91 (99)
T 1whw_A 82 VLPSTIKKEA 91 (99)
T ss_dssp EEECCCCSTT
T ss_pred EEEcCCCccc
Confidence 9999876543
No 14
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.88 E-value=3.6e-22 Score=138.40 Aligned_cols=91 Identities=19% Similarity=0.387 Sum_probs=82.0
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCC-CCCCcc
Q 037458 87 SGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILM-PNTDQP 165 (196)
Q Consensus 87 ~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~-~~~~~~ 165 (196)
......++|||+||+.++++++|+++|+.||.|.+|+|++|+.+++++|||||+|.+.++|++|++.||+..+ .+.++.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999875 334799
Q ss_pred EEEEeccCCCCC
Q 037458 166 FRLNWATFSTGD 177 (196)
Q Consensus 166 i~v~~a~~~~~~ 177 (196)
|+|.|++.....
T Consensus 88 l~v~~a~~~~~~ 99 (106)
T 2dgp_A 88 IQVKPADSESRG 99 (106)
T ss_dssp CEEEECCCCSCC
T ss_pred EEEEECCccccc
Confidence 999999876443
No 15
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.88 E-value=1.6e-22 Score=135.18 Aligned_cols=83 Identities=34% Similarity=0.599 Sum_probs=76.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEE
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLN 169 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~ 169 (196)
.+.++|||+||+.++++++|+++|+.||.|.+|++++++.++.++|||||+|.+.++|++|++.|||..+. |+.|+|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~v~ 81 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG--GRQIRTN 81 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC--CeEEEEE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999995 6999999
Q ss_pred eccCC
Q 037458 170 WATFS 174 (196)
Q Consensus 170 ~a~~~ 174 (196)
|++..
T Consensus 82 ~a~~k 86 (87)
T 3bs9_A 82 WATRK 86 (87)
T ss_dssp EEC--
T ss_pred ecCCC
Confidence 99854
No 16
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=3.3e-22 Score=137.94 Aligned_cols=87 Identities=17% Similarity=0.290 Sum_probs=81.2
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 87 SGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 87 ~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
......++|||+||+.++++++|+++|+.||.|.+|.|++++.++.++|||||+|.+.++|++|++.|||..|. ++.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l 85 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELD--GREL 85 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBT--TBCC
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEEC--CcEE
Confidence 35567899999999999999999999999999999999999999999999999999999999999999999995 6999
Q ss_pred EEEeccCCC
Q 037458 167 RLNWATFST 175 (196)
Q Consensus 167 ~v~~a~~~~ 175 (196)
+|+|++...
T Consensus 86 ~V~~a~~~~ 94 (103)
T 2dnm_A 86 RVQVARYGR 94 (103)
T ss_dssp EEEECSSCC
T ss_pred EEEECCcCC
Confidence 999998654
No 17
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.88 E-value=3.6e-22 Score=140.53 Aligned_cols=88 Identities=23% Similarity=0.358 Sum_probs=81.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
.....++|||+||+.++++++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|++||+.||+..|. ++.|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~ 98 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIG--MKRLK 98 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET--TEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEEC--CEEEE
Confidence 4456789999999999999999999999999999999999999999999999999999999999999999995 69999
Q ss_pred EEeccCCCCC
Q 037458 168 LNWATFSTGD 177 (196)
Q Consensus 168 v~~a~~~~~~ 177 (196)
|+|++.....
T Consensus 99 V~~a~~~~~~ 108 (115)
T 2cpz_A 99 VQLKRSKNDS 108 (115)
T ss_dssp EECCCCSCCC
T ss_pred EEEcCCCCcC
Confidence 9999876443
No 18
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.88 E-value=2.2e-22 Score=133.90 Aligned_cols=83 Identities=24% Similarity=0.418 Sum_probs=78.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
...+.++|||+||+.++++++|+++|+.||.|.+|.+++++.+++++|||||+|.+.++|++|++.|||..+. |+.|+
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~ 80 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF--GRTIR 80 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET--TEECE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEEC--CcEEE
Confidence 3467899999999999999999999999999999999999999999999999999999999999999999995 69999
Q ss_pred EEecc
Q 037458 168 LNWAT 172 (196)
Q Consensus 168 v~~a~ 172 (196)
|+||+
T Consensus 81 v~~ak 85 (85)
T 3mdf_A 81 VNLAK 85 (85)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 99985
No 19
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.88 E-value=1.4e-22 Score=145.99 Aligned_cols=88 Identities=24% Similarity=0.377 Sum_probs=80.1
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeE--EEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCC----CC
Q 037458 86 GSGGGENKTIWVGDLHHWMDENYLHSCFASTGEIAS--IKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSI----LM 159 (196)
Q Consensus 86 ~~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~--v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~----~~ 159 (196)
+......++|||+||++++|+++|+++|+.||.|.. |+|++|+.||+++|||||+|.+. +|.+|++.|||. .|
T Consensus 17 ~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 17 PSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 345567899999999999999999999999999976 99999999999999999999999 999999999999 88
Q ss_pred CCCCccEEEEeccCCCC
Q 037458 160 PNTDQPFRLNWATFSTG 176 (196)
Q Consensus 160 ~~~~~~i~v~~a~~~~~ 176 (196)
. |+.|+|+|++....
T Consensus 96 ~--gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 96 D--GKTINVEFAKGSKR 110 (131)
T ss_dssp G--GCCCCCEECCCSCC
T ss_pred C--CEEEEEEECCCCCC
Confidence 5 69999999986543
No 20
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=3.8e-22 Score=137.65 Aligned_cols=88 Identities=26% Similarity=0.421 Sum_probs=81.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
.....++|||+||+.++++++|+++|+.||.|.+|.|++++.++.++|||||+|.+.++|++|++.|||..|. ++.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~ 88 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYD--HLILN 88 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEET--TEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeC--CcEEE
Confidence 4567899999999999999999999999999999999999999999999999999999999999999999995 69999
Q ss_pred EEeccCCCCC
Q 037458 168 LNWATFSTGD 177 (196)
Q Consensus 168 v~~a~~~~~~ 177 (196)
|+|++.....
T Consensus 89 v~~a~~~~~~ 98 (103)
T 2cq0_A 89 VEWAKPSTNS 98 (103)
T ss_dssp EEESSCCCCS
T ss_pred EEECCCCCCC
Confidence 9999876443
No 21
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=3.3e-22 Score=136.95 Aligned_cols=86 Identities=45% Similarity=0.831 Sum_probs=79.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCee-EEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCcc
Q 037458 87 SGGGENKTIWVGDLHHWMDENYLHSCFASTGEIA-SIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQP 165 (196)
Q Consensus 87 ~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~-~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~ 165 (196)
......++|||+||+.++++++|+++|+.||.|. +|++++|+.+++++|||||+|.+.++|++|++.|||..+. ++.
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~ 81 (99)
T 2div_A 4 GSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLP--GAT 81 (99)
T ss_dssp CCCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEES--SCS
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccC--CCC
Confidence 3456789999999999999999999999999999 9999999999999999999999999999999999999996 466
Q ss_pred ----EEEEeccCC
Q 037458 166 ----FRLNWATFS 174 (196)
Q Consensus 166 ----i~v~~a~~~ 174 (196)
|+|+||+..
T Consensus 82 ~~~~l~v~~a~~~ 94 (99)
T 2div_A 82 PAKRFKLNYATYS 94 (99)
T ss_dssp SCEECCEEETTCC
T ss_pred cceeEEEeecCCC
Confidence 999999865
No 22
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.88 E-value=1.2e-21 Score=135.50 Aligned_cols=89 Identities=22% Similarity=0.395 Sum_probs=80.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCC-CCccE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPN-TDQPF 166 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~-~~~~i 166 (196)
.....++|||+||+.++++++|+++|+.||.|.+|+|++++ ++.++|||||+|.+.++|++||+.|||..+.+ .++.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34568999999999999999999999999999999999997 79999999999999999999999999999862 12899
Q ss_pred EEEeccCCCCC
Q 037458 167 RLNWATFSTGD 177 (196)
Q Consensus 167 ~v~~a~~~~~~ 177 (196)
+|.|++....+
T Consensus 90 ~V~~a~~~~~~ 100 (105)
T 2dnh_A 90 VVKFADTDKES 100 (105)
T ss_dssp EEEESCSSCCC
T ss_pred EEEECccCccc
Confidence 99999876544
No 23
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=2.3e-22 Score=138.50 Aligned_cols=90 Identities=22% Similarity=0.357 Sum_probs=82.5
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 87 SGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 87 ~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
......++|||+||+.++++++|+++|+.||.|.+|+|++|+.+++++|||||+|.+.++|++|++.||+..|. ++.|
T Consensus 7 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l 84 (102)
T 2cqb_A 7 GMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF--GRTI 84 (102)
T ss_dssp CSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEET--TEEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC--CcEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999995 7999
Q ss_pred EEEeccCCCCCC
Q 037458 167 RLNWATFSTGDK 178 (196)
Q Consensus 167 ~v~~a~~~~~~~ 178 (196)
+|+|++......
T Consensus 85 ~V~~a~~~~~~~ 96 (102)
T 2cqb_A 85 RVNLAKPMRIKE 96 (102)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEeCCCCCCCC
Confidence 999998765443
No 24
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.88 E-value=4.2e-23 Score=139.75 Aligned_cols=82 Identities=21% Similarity=0.374 Sum_probs=74.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcC-CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhC-CCCCCCCCccEEEE
Q 037458 92 NKTIWVGDLHHWMDENYLHSCFASTG-EIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYT-SILMPNTDQPFRLN 169 (196)
Q Consensus 92 ~~~lfVgnLp~~~te~~l~~~F~~~G-~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~-g~~~~~~~~~i~v~ 169 (196)
+++|||+|||.++|+++|+++|+.|| .|.+|+|++|+.||.++|||||+|.+.++|++|++.++ +..+. |+.|+|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~--gr~i~V~ 78 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNIL--GQKVSMH 78 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEET--TEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEEC--CEEEEEE
Confidence 36899999999999999999999999 89999999999999999999999999999999998774 45674 7999999
Q ss_pred eccCCC
Q 037458 170 WATFST 175 (196)
Q Consensus 170 ~a~~~~ 175 (196)
||+...
T Consensus 79 ~a~~~~ 84 (91)
T 2lxi_A 79 YSDPKP 84 (91)
T ss_dssp CCCSCC
T ss_pred EcCCCC
Confidence 998653
No 25
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=4.1e-22 Score=135.30 Aligned_cols=85 Identities=20% Similarity=0.287 Sum_probs=79.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 87 SGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 87 ~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
......++|||+||+.++++++|+++|+.||.|.+|.+++++.+++++|||||+|.+.++|++|++.|||..+. ++.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l 87 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD--GRRI 87 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEET--TEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC--CEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999995 6999
Q ss_pred EEEeccC
Q 037458 167 RLNWATF 173 (196)
Q Consensus 167 ~v~~a~~ 173 (196)
+|+|++.
T Consensus 88 ~v~~a~~ 94 (95)
T 2cqc_A 88 RVSGPSS 94 (95)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 9999875
No 26
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=9.2e-22 Score=135.01 Aligned_cols=86 Identities=13% Similarity=0.314 Sum_probs=79.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 87 SGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 87 ~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
......++|||+||+.++++++|+++|+.||.|.+|+++.++ +++++|||||+|.+.++|++|++.|||..+. ++.|
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l 88 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIK--ENII 88 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESS--SCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEEC--CEEE
Confidence 345678999999999999999999999999999999999998 8999999999999999999999999999995 6999
Q ss_pred EEEeccCCC
Q 037458 167 RLNWATFST 175 (196)
Q Consensus 167 ~v~~a~~~~ 175 (196)
+|.|++...
T Consensus 89 ~v~~a~~~~ 97 (100)
T 2do4_A 89 KVAISNSGP 97 (100)
T ss_dssp EEEECCCCS
T ss_pred EEEECCCCC
Confidence 999998653
No 27
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.88 E-value=3.9e-22 Score=151.78 Aligned_cols=107 Identities=21% Similarity=0.331 Sum_probs=88.8
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 87 SGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 87 ~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
.+....++|||+||+.++|+++|+++|+.||.|.+|.+++++.+|.++|||||+|.+.++|.+||+. ++..+. |+.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~--g~~l 84 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVD--GRVV 84 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEET--TEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEEC--CEEe
Confidence 3556789999999999999999999999999999999999999999999999999999999999975 888884 6999
Q ss_pred EEEeccCCCCCCC-CCCCCCceEEecCCCCC
Q 037458 167 RLNWATFSTGDKR-SDNGPDLSIFVGDLAAD 196 (196)
Q Consensus 167 ~v~~a~~~~~~~~-~~~~~~~~ifV~nL~~d 196 (196)
+|.++.......+ .......+|||+||+++
T Consensus 85 ~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~ 115 (196)
T 1l3k_A 85 EPKRAVSREDSQRPGAHLTVKKIFVGGIKED 115 (196)
T ss_dssp EEEECCC-----------CCSEEEEECCTTT
T ss_pred eeecccCcccccccccCCCcceEEEeCCCCC
Confidence 9999876533322 23345679999999974
No 28
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=1.2e-21 Score=135.90 Aligned_cols=89 Identities=21% Similarity=0.422 Sum_probs=81.6
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeec-CCCCCcccEEEEEEcCHHHHHHHHHHh-CCCCCCCCCc
Q 037458 87 SGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRN-KQTGLSEGYGFVEFFTHATAEKVLQSY-TSILMPNTDQ 164 (196)
Q Consensus 87 ~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d-~~tg~~~g~afV~F~~~~~A~~al~~l-~g~~~~~~~~ 164 (196)
......++|||+||+.++++++|+++|+.||.|.+|+|+++ +.++.++|||||+|.+.++|++|++.| |+..|. ++
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~--g~ 87 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY--GR 87 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS--SC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeEC--CC
Confidence 35567899999999999999999999999999999999999 789999999999999999999999999 999995 69
Q ss_pred cEEEEeccCCCCC
Q 037458 165 PFRLNWATFSTGD 177 (196)
Q Consensus 165 ~i~v~~a~~~~~~ 177 (196)
.|+|+|++.....
T Consensus 88 ~l~v~~a~~~~~~ 100 (107)
T 2cph_A 88 RLVLEWADSEVTV 100 (107)
T ss_dssp BCEEEECCCCCCC
T ss_pred EEEEEeCCCCCCC
Confidence 9999999876443
No 29
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=6.6e-22 Score=137.06 Aligned_cols=85 Identities=26% Similarity=0.431 Sum_probs=79.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
.....++|||+||+.++++++|+++|+.||.|.+|.+++++.+|.++|||||+|.+.++|++|++.|||..|. |+.|+
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~ 96 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM--GQPIS 96 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSS--SSBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEEC--CcEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999995 69999
Q ss_pred EEeccCC
Q 037458 168 LNWATFS 174 (196)
Q Consensus 168 v~~a~~~ 174 (196)
|+|++..
T Consensus 97 V~~a~~~ 103 (106)
T 1p27_B 97 VDWCFVR 103 (106)
T ss_dssp EEESEES
T ss_pred EEeecCC
Confidence 9999754
No 30
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.88 E-value=1e-22 Score=137.38 Aligned_cols=81 Identities=21% Similarity=0.363 Sum_probs=72.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcC--CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q 037458 93 KTIWVGDLHHWMDENYLHSCFASTG--EIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNW 170 (196)
Q Consensus 93 ~~lfVgnLp~~~te~~l~~~F~~~G--~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~ 170 (196)
.+|||+||++++++++|+++|+.|| .|.+|++++|+.+|+++|||||+|.+.++|++|++.|||..+. |+.|+|.+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~--gr~i~V~~ 79 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH--GQNPVVTP 79 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSS--SCCCEECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeC--CEEEEEEE
Confidence 5899999999999999999999999 9999999999999999999999999999999999999999995 69999999
Q ss_pred ccCCC
Q 037458 171 ATFST 175 (196)
Q Consensus 171 a~~~~ 175 (196)
+....
T Consensus 80 ~~~~~ 84 (90)
T 3p5t_L 80 SNKLE 84 (90)
T ss_dssp C----
T ss_pred CCCCc
Confidence 88653
No 31
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.87 E-value=8.4e-22 Score=135.02 Aligned_cols=82 Identities=22% Similarity=0.365 Sum_probs=77.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeE--------EEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCC
Q 037458 89 GGENKTIWVGDLHHWMDENYLHSCFASTGEIAS--------IKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMP 160 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~--------v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~ 160 (196)
....++|||+||+.++++++|+++|+.||.|.+ |++++|+.+|+++|||||+|.+.++|++|++.|||..+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 356789999999999999999999999999999 999999999999999999999999999999999999995
Q ss_pred CCCccEEEEecc
Q 037458 161 NTDQPFRLNWAT 172 (196)
Q Consensus 161 ~~~~~i~v~~a~ 172 (196)
|+.|+|+||+
T Consensus 90 --g~~l~V~~A~ 99 (99)
T 2la6_A 90 --GNPIKVSFAT 99 (99)
T ss_dssp --SSBCEEEECC
T ss_pred --CcEEEEEecC
Confidence 6999999985
No 32
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.87 E-value=7.6e-22 Score=137.63 Aligned_cols=87 Identities=29% Similarity=0.547 Sum_probs=80.9
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCcc
Q 037458 86 GSGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQP 165 (196)
Q Consensus 86 ~~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~ 165 (196)
.......++|||+||+.++++++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|++|++.|+|..|. |+.
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~--g~~ 97 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA--GRP 97 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSS--SSC
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC--CEE
Confidence 345567899999999999999999999999999999999999999999999999999999999999999999995 699
Q ss_pred EEEEeccCC
Q 037458 166 FRLNWATFS 174 (196)
Q Consensus 166 i~v~~a~~~ 174 (196)
|+|+|++..
T Consensus 98 l~V~~a~~k 106 (108)
T 2jrs_A 98 MKVGHVTER 106 (108)
T ss_dssp CEEECSCSS
T ss_pred EEEEEcccC
Confidence 999999854
No 33
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.87 E-value=6.3e-22 Score=131.12 Aligned_cols=80 Identities=33% Similarity=0.540 Sum_probs=76.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEecc
Q 037458 93 KTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWAT 172 (196)
Q Consensus 93 ~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~a~ 172 (196)
.+|||+||+.++++++|+++|+.||.|.+|.+++++.++.++|||||+|.+.++|++|++.|||..+. |+.|+|+|++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~--g~~l~v~~a~ 79 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN--GRPLRINWAA 79 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET--TEECEEEECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeC--CcEEEEEecC
Confidence 68999999999999999999999999999999999999999999999999999999999999999995 6999999998
Q ss_pred CC
Q 037458 173 FS 174 (196)
Q Consensus 173 ~~ 174 (196)
..
T Consensus 80 ~~ 81 (83)
T 3md1_A 80 KL 81 (83)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 34
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=3.6e-22 Score=135.41 Aligned_cols=84 Identities=18% Similarity=0.334 Sum_probs=78.8
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 87 SGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 87 ~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
......++|||+||+.++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|++|++.|||..|. ++.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l 88 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLF--GRVI 88 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEET--TEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeC--CcEE
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999995 6999
Q ss_pred EEEecc
Q 037458 167 RLNWAT 172 (196)
Q Consensus 167 ~v~~a~ 172 (196)
+|+||+
T Consensus 89 ~v~~ak 94 (94)
T 2e5h_A 89 KASIAI 94 (94)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999985
No 35
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.87 E-value=7.4e-22 Score=146.23 Aligned_cols=98 Identities=30% Similarity=0.493 Sum_probs=88.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEec
Q 037458 92 NKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWA 171 (196)
Q Consensus 92 ~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~a 171 (196)
.++|||+|||.++++++|+++|+.||.|.+|.+++++.+|+++|||||+|.+.++|.+|++.|+|..+. ++.|+|.|+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~--g~~l~v~~~ 79 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQ--TKTIKVSYA 79 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEEEC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccC--CceEEEEec
Confidence 589999999999999999999999999999999999989999999999999999999999999999995 699999998
Q ss_pred cCCCCCCCCCCCCCceEEecCCCCC
Q 037458 172 TFSTGDKRSDNGPDLSIFVGDLAAD 196 (196)
Q Consensus 172 ~~~~~~~~~~~~~~~~ifV~nL~~d 196 (196)
..... .....+|||+||+.+
T Consensus 80 ~~~~~-----~~~~~~l~v~nl~~~ 99 (167)
T 1fxl_A 80 RPSSA-----SIRDANLYVSGLPKT 99 (167)
T ss_dssp CCCCG-----GGTTCEEEEESCCTT
T ss_pred CCCcc-----cCCCCcEEECCCCCc
Confidence 75432 234568999999974
No 36
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.87 E-value=6.3e-22 Score=147.02 Aligned_cols=99 Identities=22% Similarity=0.427 Sum_probs=89.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNW 170 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~ 170 (196)
..++|||+|||.++++++|+++|+.||.|.+|++++++.+|.++|||||+|.+.++|.+|++.|+|..+. ++.|+|.|
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~--g~~l~v~~ 79 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVR--NKRLKVSY 79 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET--TEECEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeC--CcEEEEEe
Confidence 4689999999999999999999999999999999999999999999999999999999999999999995 69999999
Q ss_pred ccCCCCCCCCCCCCCceEEecCCCCC
Q 037458 171 ATFSTGDKRSDNGPDLSIFVGDLAAD 196 (196)
Q Consensus 171 a~~~~~~~~~~~~~~~~ifV~nL~~d 196 (196)
++.... .....+|||+||+.+
T Consensus 80 ~~~~~~-----~~~~~~l~v~nl~~~ 100 (168)
T 1b7f_A 80 ARPGGE-----SIKDTNLYVTNLPRT 100 (168)
T ss_dssp CCCCSS-----TTTTCEEEEESCCTT
T ss_pred cCCCcc-----cCCCCCEEEeCCCCC
Confidence 885432 245679999999974
No 37
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=1.1e-21 Score=136.93 Aligned_cols=89 Identities=21% Similarity=0.373 Sum_probs=81.6
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhC------CCCCC
Q 037458 87 SGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYT------SILMP 160 (196)
Q Consensus 87 ~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~------g~~~~ 160 (196)
......++|||+||++++++++|+++|+.||.|.+|+|++|+.++.++|||||+|.+.++|++||+.|| +..|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 345678999999999999999999999999999999999999999999999999999999999999999 88885
Q ss_pred CCCccEEEEeccCCCCC
Q 037458 161 NTDQPFRLNWATFSTGD 177 (196)
Q Consensus 161 ~~~~~i~v~~a~~~~~~ 177 (196)
++.|+|.|++.....
T Consensus 90 --g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 90 --GRQLKVDLAVTRDEA 104 (111)
T ss_dssp --SCEEEEECCCCCCCC
T ss_pred --CEEEEEEECCCCccC
Confidence 699999999865433
No 38
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.87 E-value=1.2e-21 Score=138.36 Aligned_cols=85 Identities=19% Similarity=0.398 Sum_probs=79.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
+....++|||+||+.++++++|+++|+.||.|.+|.|+.++ +|.++|||||+|.+.++|++|++.|||..|. |+.|+
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~--g~~l~ 79 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLH--GKAIK 79 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCS--SSBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEEC--CEEEE
Confidence 34677899999999999999999999999999999999998 8999999999999999999999999999995 69999
Q ss_pred EEeccCCC
Q 037458 168 LNWATFST 175 (196)
Q Consensus 168 v~~a~~~~ 175 (196)
|+|++...
T Consensus 80 V~~a~~~~ 87 (116)
T 2fy1_A 80 VEQAKKPS 87 (116)
T ss_dssp EEECCCSS
T ss_pred EEECCCCC
Confidence 99998654
No 39
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.87 E-value=5.8e-22 Score=135.10 Aligned_cols=81 Identities=17% Similarity=0.382 Sum_probs=77.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEec
Q 037458 92 NKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWA 171 (196)
Q Consensus 92 ~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~a 171 (196)
.++|||+||+.++++++|+++|+.||.|.+|++++++.+|.++|||||+|.+.++|++|++.|||..+. |+.|+|+|+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~~l~V~~a 79 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLG--SRFLKCGYS 79 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEET--TEECEEEEC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeEC--CeEEEEEEc
Confidence 689999999999999999999999999999999999999999999999999999999999999999995 699999999
Q ss_pred cCC
Q 037458 172 TFS 174 (196)
Q Consensus 172 ~~~ 174 (196)
+..
T Consensus 80 ~~~ 82 (96)
T 2x1f_A 80 SNS 82 (96)
T ss_dssp SCS
T ss_pred CCC
Confidence 865
No 40
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=4.8e-22 Score=135.30 Aligned_cols=86 Identities=23% Similarity=0.496 Sum_probs=79.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEE-EEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEE
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIASI-KVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRL 168 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v-~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v 168 (196)
...++|||+||+.++++++|+++|+.||.|.+| +|++|+.++.++|||||+|.+.++|++|++.|||..|. ++.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~v 80 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC--NRPITV 80 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEET--TEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC--CEEEEE
Confidence 467899999999999999999999999999999 99999999999999999999999999999999999995 699999
Q ss_pred EeccCCCCC
Q 037458 169 NWATFSTGD 177 (196)
Q Consensus 169 ~~a~~~~~~ 177 (196)
+|++.....
T Consensus 81 ~~a~~~~~~ 89 (96)
T 1x5t_A 81 SYAFKKDSK 89 (96)
T ss_dssp EESCCCCCC
T ss_pred EEecccCCC
Confidence 999865433
No 41
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=8.2e-22 Score=134.71 Aligned_cols=86 Identities=22% Similarity=0.366 Sum_probs=79.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCC---CCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQ---TGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~---tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
.+.++|||+||+.++++++|+++|+.||.|.+|.+++++. |+.++|||||+|.+.++|++|++.|||..|. ++.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l 80 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVD--GHKL 80 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEET--TEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeC--CeEE
Confidence 5678999999999999999999999999999999999886 6689999999999999999999999999995 6999
Q ss_pred EEEeccCCCCC
Q 037458 167 RLNWATFSTGD 177 (196)
Q Consensus 167 ~v~~a~~~~~~ 177 (196)
+|.|++.....
T Consensus 81 ~V~~a~~~~~~ 91 (98)
T 2cpf_A 81 EVRISERATKP 91 (98)
T ss_dssp EEECSSCSSCC
T ss_pred EEEEccCCCCC
Confidence 99999876443
No 42
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.87 E-value=1.7e-21 Score=137.54 Aligned_cols=84 Identities=24% Similarity=0.373 Sum_probs=78.2
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 87 SGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 87 ~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
......++|||+||++++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|++|++.|||..|. ++.|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l 112 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVG--TKRL 112 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEET--TEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEEC--CEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999995 6999
Q ss_pred EEEecc
Q 037458 167 RLNWAT 172 (196)
Q Consensus 167 ~v~~a~ 172 (196)
+|+|++
T Consensus 113 ~V~~ak 118 (118)
T 2khc_A 113 KVQLKK 118 (118)
T ss_dssp CEEEC-
T ss_pred EEEecC
Confidence 999975
No 43
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.4e-21 Score=137.74 Aligned_cols=90 Identities=27% Similarity=0.416 Sum_probs=81.2
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCcc
Q 037458 86 GSGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQP 165 (196)
Q Consensus 86 ~~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~ 165 (196)
.......++|||+||+.++++++|+++|+.||.|++|+|++++.+++++|||||+|.+.++|++||+.|++ .|. ++.
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~--g~~ 87 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IID--GRK 87 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EET--TEE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCC--CEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999999998 674 699
Q ss_pred EEEEeccCCCCCC
Q 037458 166 FRLNWATFSTGDK 178 (196)
Q Consensus 166 i~v~~a~~~~~~~ 178 (196)
|+|+|++.....+
T Consensus 88 l~V~~a~~~~~~~ 100 (116)
T 2cqd_A 88 ANVNLAYLGAKPR 100 (116)
T ss_dssp CEEEESTTTCCCC
T ss_pred EEEEEcccCCCcc
Confidence 9999998654433
No 44
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.87 E-value=6.6e-22 Score=138.04 Aligned_cols=86 Identities=24% Similarity=0.426 Sum_probs=80.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
.....++|||+||+.++++++|+++|+.||.|.+|.++.++.+|.++|||||+|.+.++|++|+..|||..|. |+.|+
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~~l~ 99 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM--GQTIQ 99 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEET--TEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC--CcEEE
Confidence 4456789999999999999999999999999999999999999999999999999999999999999999995 69999
Q ss_pred EEeccCCC
Q 037458 168 LNWATFST 175 (196)
Q Consensus 168 v~~a~~~~ 175 (196)
|+|++...
T Consensus 100 V~~a~~~~ 107 (110)
T 1oo0_B 100 VDWCFVKG 107 (110)
T ss_dssp EEESEESS
T ss_pred EEEcccCC
Confidence 99998654
No 45
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.87 E-value=9.2e-22 Score=141.47 Aligned_cols=86 Identities=20% Similarity=0.315 Sum_probs=80.6
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 87 SGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 87 ~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
......++|||+||+.++++++|+++|+.||.|.+|+|++|+.+++++|||||+|.+.++|++||+.|||..|. |+.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~--g~~l 118 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD--GRRI 118 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSS--SSCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC--CEEE
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999995 6999
Q ss_pred EEEeccCC
Q 037458 167 RLNWATFS 174 (196)
Q Consensus 167 ~v~~a~~~ 174 (196)
+|+|++..
T Consensus 119 ~V~~a~~~ 126 (129)
T 2kxn_B 119 RVDFSITK 126 (129)
T ss_dssp EESCCSSS
T ss_pred EEEEecCC
Confidence 99999864
No 46
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.87 E-value=2.5e-22 Score=138.11 Aligned_cols=82 Identities=21% Similarity=0.256 Sum_probs=77.5
Q ss_pred CCCCEEEEcCCCC------CCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCC
Q 037458 90 GENKTIWVGDLHH------WMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTD 163 (196)
Q Consensus 90 ~~~~~lfVgnLp~------~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~ 163 (196)
...++|||+|||. ++++++|+++|+.||.|.+|+|++|+.||+++|||||+|.+.++|++|++.|||..|. +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~--g 81 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLD--L 81 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSS--S
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccC--C
Confidence 4578999999999 9999999999999999999999999999999999999999999999999999999995 5
Q ss_pred -ccEEEEeccC
Q 037458 164 -QPFRLNWATF 173 (196)
Q Consensus 164 -~~i~v~~a~~ 173 (196)
+.|+|.|++.
T Consensus 82 ~r~l~V~~a~~ 92 (100)
T 3ns6_A 82 KHRLFLYTMKD 92 (100)
T ss_dssp SCBCEEEESHH
T ss_pred CeEEEEEECch
Confidence 9999999864
No 47
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.87 E-value=6.4e-22 Score=146.76 Aligned_cols=83 Identities=20% Similarity=0.388 Sum_probs=76.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcC--CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 89 GGENKTIWVGDLHHWMDENYLHSCFASTG--EIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~~te~~l~~~F~~~G--~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
....++|||+||++++++++|+++|+.|| .|.+|+|++|+.+|+++|||||+|.+.++|++||+.|||..|. |+.|
T Consensus 52 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~--Gr~l 129 (156)
T 3n9u_C 52 RNRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLN--GEKV 129 (156)
T ss_dssp ----CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEET--TEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC--CeEe
Confidence 34678999999999999999999999999 9999999999999999999999999999999999999999995 6999
Q ss_pred EEEeccC
Q 037458 167 RLNWATF 173 (196)
Q Consensus 167 ~v~~a~~ 173 (196)
+|.+++.
T Consensus 130 ~V~~a~~ 136 (156)
T 3n9u_C 130 DVRPATR 136 (156)
T ss_dssp EEEECCH
T ss_pred EEEEcCC
Confidence 9999875
No 48
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=2.1e-21 Score=134.08 Aligned_cols=88 Identities=27% Similarity=0.456 Sum_probs=80.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHh-cCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCC-CCCCCcc
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFAS-TGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSIL-MPNTDQP 165 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~-~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~-~~~~~~~ 165 (196)
+....++|||+||+.++++++|+++|+. ||.|.+|+|++|+ ++.++|||||+|.+.++|++|++.|++.. |. ++.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~--g~~ 81 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLG--SKP 81 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSS--SSC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccC--CEe
Confidence 4467789999999999999999999999 9999999999998 89999999999999999999999999999 85 699
Q ss_pred EEEEeccCCCCCC
Q 037458 166 FRLNWATFSTGDK 178 (196)
Q Consensus 166 i~v~~a~~~~~~~ 178 (196)
|+|+|++.....+
T Consensus 82 l~v~~a~~~~~~~ 94 (104)
T 2dhg_A 82 VRLSVAIPKASRV 94 (104)
T ss_dssp CCCCBCCCCCSCC
T ss_pred EEEEEccCCCcCC
Confidence 9999998665443
No 49
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=3.1e-21 Score=133.03 Aligned_cols=87 Identities=24% Similarity=0.383 Sum_probs=79.8
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 87 SGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 87 ~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
......++|||+||++++++++|+++|+.||.|.+|+|+.+ ++.++|||||+|.+.++|++|++.|||..|. ++.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l 85 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVA--TKPL 85 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSS--SSBC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeC--CcEE
Confidence 34567899999999999999999999999999999999998 7999999999999999999999999999995 6999
Q ss_pred EEEeccCCCCC
Q 037458 167 RLNWATFSTGD 177 (196)
Q Consensus 167 ~v~~a~~~~~~ 177 (196)
+|+|++.....
T Consensus 86 ~V~~a~~~~~~ 96 (103)
T 2d9p_A 86 YVALAQRKEER 96 (103)
T ss_dssp EEEECSSCCCC
T ss_pred EEEEecccccC
Confidence 99999876543
No 50
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.86 E-value=1.3e-21 Score=132.88 Aligned_cols=84 Identities=18% Similarity=0.406 Sum_probs=77.8
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 87 SGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 87 ~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
......++|||+||+.++++++|+++|+.||.|.+|++++++. ++++|||||+|.+.++|++|++.||+..+. ++.|
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l 87 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLY--GRPI 87 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEET--TEEC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEEC--CCEE
Confidence 3456789999999999999999999999999999999999985 999999999999999999999999999995 6999
Q ss_pred EEEeccC
Q 037458 167 RLNWATF 173 (196)
Q Consensus 167 ~v~~a~~ 173 (196)
+|+|++.
T Consensus 88 ~V~~a~~ 94 (95)
T 2ywk_A 88 NVSGPSS 94 (95)
T ss_dssp EEECCCC
T ss_pred EEEEcCC
Confidence 9999874
No 51
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.8e-21 Score=136.44 Aligned_cols=88 Identities=18% Similarity=0.257 Sum_probs=81.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCee--------EEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCC
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIA--------SIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILM 159 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~--------~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~ 159 (196)
.....++|||+||+.++++++|+++|+.||.|. .|+|+.|+.+++++|||||+|.+.++|++||+.|||..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 456789999999999999999999999999999 699999999999999999999999999999999999999
Q ss_pred CCCCccEEEEeccCCCCC
Q 037458 160 PNTDQPFRLNWATFSTGD 177 (196)
Q Consensus 160 ~~~~~~i~v~~a~~~~~~ 177 (196)
. ++.|+|+|++.....
T Consensus 91 ~--g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 91 Q--GSKLKVSLARKKPPM 106 (113)
T ss_dssp T--TEECEEECSSCCCCS
T ss_pred C--CCEEEEEECCCCCCC
Confidence 5 699999999876443
No 52
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=4.3e-21 Score=132.32 Aligned_cols=88 Identities=27% Similarity=0.510 Sum_probs=78.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 87 SGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 87 ~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
......++|||+||+.++++++|+++|+.||.|.+|+|++++.+ ++|||||+|.+.++|++|++.|++..|. ++.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l 85 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKIL--GKEV 85 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEET--TEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcC--CCeE
Confidence 35567899999999999999999999999999999999998643 6899999999999999999999999995 6999
Q ss_pred EEEeccCCCCCC
Q 037458 167 RLNWATFSTGDK 178 (196)
Q Consensus 167 ~v~~a~~~~~~~ 178 (196)
+|+|++.....+
T Consensus 86 ~V~~a~~~~~~~ 97 (103)
T 2cqi_A 86 KVNWATTPSSQK 97 (103)
T ss_dssp EEEECCCTTCCC
T ss_pred EEEECCCCcccc
Confidence 999998765443
No 53
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.86 E-value=2.7e-21 Score=133.46 Aligned_cols=86 Identities=24% Similarity=0.391 Sum_probs=79.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
.....++|||+||+.++++++|+++|+.|| |.+|+|++++.+++++|||||+|.+.++|++|+ .||+..|. ++.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~--g~~l~ 86 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLG--DRSLR 86 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEET--TEECE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeEC--CeEEE
Confidence 445678999999999999999999999997 999999999999999999999999999999999 89999995 69999
Q ss_pred EEeccCCCCC
Q 037458 168 LNWATFSTGD 177 (196)
Q Consensus 168 v~~a~~~~~~ 177 (196)
|+|++.....
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2dng_A 87 VDIAEGRKQD 96 (103)
T ss_dssp EEECCCCCCC
T ss_pred EEEecCCCCC
Confidence 9999875443
No 54
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.86 E-value=2.5e-21 Score=144.50 Aligned_cols=102 Identities=21% Similarity=0.388 Sum_probs=89.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCC--CcccEEEEEEcCHHHHHHHHHHhCCCCCC-CCCccEE
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTG--LSEGYGFVEFFTHATAEKVLQSYTSILMP-NTDQPFR 167 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg--~~~g~afV~F~~~~~A~~al~~l~g~~~~-~~~~~i~ 167 (196)
+.++|||+|||.++|+++|+++|+.||.|.+|++++++.++ +++|||||+|.+.++|++|++.|++..+. +.++.++
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999999999887 89999999999999999999999997764 3468889
Q ss_pred EEeccCCCCCCCCCCCCCceEEecCCCCC
Q 037458 168 LNWATFSTGDKRSDNGPDLSIFVGDLAAD 196 (196)
Q Consensus 168 v~~a~~~~~~~~~~~~~~~~ifV~nL~~d 196 (196)
+.++...... .....+|||+||+.+
T Consensus 82 ~~~~~~~~~~----~~~~~~l~v~nl~~~ 106 (175)
T 3nmr_A 82 MKPADSEKNN----AVEDRKLFIGMISKK 106 (175)
T ss_dssp EEECGGGCCS----CGGGSEEEEESCCTT
T ss_pred Eccccccccc----cCCCCeEEEcCCCCc
Confidence 9888754322 345679999999974
No 55
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.86 E-value=2.2e-21 Score=138.55 Aligned_cols=86 Identities=26% Similarity=0.422 Sum_probs=80.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
.....++|||+||+.++++++|+++|+.||.|.+|.|+.++.++.++|||||+|.+.++|++||+.|||..|. ++.|+
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~ 95 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM--GQPIS 95 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSS--SSBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC--CeEEE
Confidence 4456789999999999999999999999999999999999999999999999999999999999999999995 69999
Q ss_pred EEeccCCC
Q 037458 168 LNWATFST 175 (196)
Q Consensus 168 v~~a~~~~ 175 (196)
|+|++...
T Consensus 96 v~~a~~~~ 103 (126)
T 3ex7_B 96 VDWCFVRG 103 (126)
T ss_dssp EEESEESS
T ss_pred EEEecCCC
Confidence 99997644
No 56
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.86 E-value=4.5e-21 Score=129.44 Aligned_cols=84 Identities=18% Similarity=0.275 Sum_probs=77.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
.....++|||+||+.++++++|+++|+.||.|.+|+++++ +++++|||||+|.+.++|++|++.|++..+. ++.|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~--g~~l~ 79 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLS--GREID 79 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBT--TBCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEEC--CcEEE
Confidence 3457899999999999999999999999999999999984 7899999999999999999999999999995 69999
Q ss_pred EEeccCCC
Q 037458 168 LNWATFST 175 (196)
Q Consensus 168 v~~a~~~~ 175 (196)
|+|++...
T Consensus 80 v~~a~~~~ 87 (92)
T 2dgv_A 80 VRIDRNAS 87 (92)
T ss_dssp CEECSCCS
T ss_pred EEEcCCCC
Confidence 99998654
No 57
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.8e-21 Score=133.58 Aligned_cols=87 Identities=17% Similarity=0.279 Sum_probs=79.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCC-CCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQT-GLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~t-g~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
.....++|||+||++++++++|+++|+.|| |.+|+|++++.+ ++++|||||+|.+.++|++|| .||+..|. ++.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~--g~~l 86 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG--NKRI 86 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEET--TEEC
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeC--CcEE
Confidence 335678999999999999999999999999 999999999988 999999999999999999999 89999995 6999
Q ss_pred EEEeccCCCCCC
Q 037458 167 RLNWATFSTGDK 178 (196)
Q Consensus 167 ~v~~a~~~~~~~ 178 (196)
+|+|++......
T Consensus 87 ~V~~a~~~~~~~ 98 (104)
T 1wi8_A 87 RVDVADQAQDKD 98 (104)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEccCCCCCC
Confidence 999998765443
No 58
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.86 E-value=2.9e-21 Score=142.84 Aligned_cols=98 Identities=29% Similarity=0.544 Sum_probs=86.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEecc
Q 037458 93 KTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWAT 172 (196)
Q Consensus 93 ~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~a~ 172 (196)
++|||+|||.++|+++|+++|+.||.|.+|++++++. ++++|||||+|.+.++|.+|++.|+|..+. ++.|+|.|+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~--g~~i~v~~~~ 77 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIE--NNIVKINWAF 77 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEEECC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccC--CCeeEEEEcC
Confidence 6899999999999999999999999999999999974 789999999999999999999999999995 6999999987
Q ss_pred CCCCCCCCCCCCCceEEecCCCCC
Q 037458 173 FSTGDKRSDNGPDLSIFVGDLAAD 196 (196)
Q Consensus 173 ~~~~~~~~~~~~~~~ifV~nL~~d 196 (196)
..... ......+|||+||+.+
T Consensus 78 ~~~~~---~~~~~~~l~v~nl~~~ 98 (166)
T 3md3_A 78 QSQQS---SSDDTFNLFVGDLNVN 98 (166)
T ss_dssp CCCCC---CCTTCEEEEEESCCTT
T ss_pred CCCCC---CCCCCceEEECCCCCC
Confidence 65432 3456779999999974
No 59
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=8.2e-22 Score=136.06 Aligned_cols=85 Identities=21% Similarity=0.442 Sum_probs=79.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEE
Q 037458 89 GGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRL 168 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v 168 (196)
....++|||+||+.++++++|+++|+.||.|.+|.+++++.+|.++|||||+|.+.++|++|++.|||..+. |+.|+|
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v 82 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFS--GRALRV 82 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCS--SSCBEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC--CcEEEE
Confidence 345689999999999999999999999999999999999999999999999999999999999999999995 699999
Q ss_pred EeccCCC
Q 037458 169 NWATFST 175 (196)
Q Consensus 169 ~~a~~~~ 175 (196)
+|++...
T Consensus 83 ~~a~~~~ 89 (104)
T 1p1t_A 83 DNAASEK 89 (104)
T ss_dssp EETTCTT
T ss_pred EeCCCcc
Confidence 9998653
No 60
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.86 E-value=3.5e-21 Score=133.58 Aligned_cols=83 Identities=22% Similarity=0.348 Sum_probs=78.0
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 87 SGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 87 ~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
......++|||+||+.++++++|+++|+.||.|++|+|++++ +++++|||||+|.+.++|++|++.|||..|. ++.|
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l 100 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLD--GRPM 100 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEET--TEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeC--CcEE
Confidence 345678999999999999999999999999999999999998 8999999999999999999999999999995 6999
Q ss_pred EEEecc
Q 037458 167 RLNWAT 172 (196)
Q Consensus 167 ~v~~a~ 172 (196)
+|+|++
T Consensus 101 ~V~~a~ 106 (107)
T 3ulh_A 101 NIQLVT 106 (107)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999986
No 61
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.86 E-value=2.9e-21 Score=129.17 Aligned_cols=82 Identities=24% Similarity=0.364 Sum_probs=75.3
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 87 SGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 87 ~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
......++|||+||+.++++++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|++|++ +++..|. |+.|
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~--g~~i 82 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLD--GRVI 82 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEET--TEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEEC--CEEE
Confidence 355678999999999999999999999999999999999999999999999999999999999996 5888884 6999
Q ss_pred EEEec
Q 037458 167 RLNWA 171 (196)
Q Consensus 167 ~v~~a 171 (196)
+|.+|
T Consensus 83 ~v~~A 87 (87)
T 3s7r_A 83 DPKKA 87 (87)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99886
No 62
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=9.6e-21 Score=130.58 Aligned_cols=88 Identities=22% Similarity=0.351 Sum_probs=79.1
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCcc
Q 037458 86 GSGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQP 165 (196)
Q Consensus 86 ~~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~ 165 (196)
.......++|||+||+.++++++|+++|+.||.|.+|+|++++. .++|||||+|.+.++|++|++.||+..|. ++.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~ 84 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVE--GRK 84 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEET--TEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEEC--CEE
Confidence 34566789999999999999999999999999999999999864 38899999999999999999999999995 699
Q ss_pred EEEEeccCCCCC
Q 037458 166 FRLNWATFSTGD 177 (196)
Q Consensus 166 i~v~~a~~~~~~ 177 (196)
|+|+|++.....
T Consensus 85 l~v~~a~~~~~~ 96 (103)
T 2cq3_A 85 IEVNNATARVMT 96 (103)
T ss_dssp CEEEECCSSCCC
T ss_pred EEEEEcccCCCC
Confidence 999999876443
No 63
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=2.1e-21 Score=134.40 Aligned_cols=88 Identities=26% Similarity=0.367 Sum_probs=80.8
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCcc
Q 037458 86 GSGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQP 165 (196)
Q Consensus 86 ~~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~ 165 (196)
.......++|||+||++++++++|+++|+.||.|.+|+|++++.++.++|||||+|.+.++|++||+. ++..|. ++.
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~--g~~ 86 (105)
T 2dh8_A 10 NSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLD--GRN 86 (105)
T ss_dssp CCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEET--TEE
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeEC--CEE
Confidence 34567789999999999999999999999999999999999999999999999999999999999998 999995 699
Q ss_pred EEEEeccCCCC
Q 037458 166 FRLNWATFSTG 176 (196)
Q Consensus 166 i~v~~a~~~~~ 176 (196)
|+|+|++....
T Consensus 87 l~V~~a~~~~~ 97 (105)
T 2dh8_A 87 IDPKPCTPRGM 97 (105)
T ss_dssp EBCCCSCCSSC
T ss_pred EEEEEccCCCC
Confidence 99999986543
No 64
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=9.9e-21 Score=132.77 Aligned_cols=85 Identities=21% Similarity=0.364 Sum_probs=78.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
.....++|||+||+.++++++|+++|+.||.|.+|+|++++ +++++|||||+|.+.++|++|++.||+..|. ++.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~ 87 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLF--DRPMH 87 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEET--TEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeC--CCEEE
Confidence 44668899999999999999999999999999999999997 5999999999999999999999999999995 69999
Q ss_pred EEeccCCC
Q 037458 168 LNWATFST 175 (196)
Q Consensus 168 v~~a~~~~ 175 (196)
|+|++...
T Consensus 88 v~~a~~~~ 95 (114)
T 2do0_A 88 VKMDERAL 95 (114)
T ss_dssp EEECSCCC
T ss_pred EEEcccCC
Confidence 99997543
No 65
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=4.6e-22 Score=132.49 Aligned_cols=82 Identities=22% Similarity=0.298 Sum_probs=76.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEE
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLN 169 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~ 169 (196)
...++|||+||+.++++++|+++|+.||.|.+|+++.++.++.++|||||+|.+.++|++|++.|||..+. ++.|++.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~~~~~ 80 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQ--AQMAKQS 80 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCC--EESCCSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEe--eEEEeec
Confidence 46789999999999999999999999999999999999999999999999999999999999999999995 6888888
Q ss_pred eccC
Q 037458 170 WATF 173 (196)
Q Consensus 170 ~a~~ 173 (196)
|+++
T Consensus 81 ~~~s 84 (85)
T 1x4e_A 81 GPSS 84 (85)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 66
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.85 E-value=2.6e-21 Score=129.41 Aligned_cols=83 Identities=20% Similarity=0.281 Sum_probs=76.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCC-cccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEE
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGL-SEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRL 168 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~-~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v 168 (196)
...++|||+||+.++++++|+++|+.||.|.+|.++.++.++. ++|||||+|.+.++|++|++.|||..+. |+.|+|
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v 79 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQID--GQEITA 79 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEET--TEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeEC--CeEEEE
Confidence 3568999999999999999999999999999999999987766 8999999999999999999999999995 699999
Q ss_pred EeccCC
Q 037458 169 NWATFS 174 (196)
Q Consensus 169 ~~a~~~ 174 (196)
+++...
T Consensus 80 ~~a~~~ 85 (88)
T 4a8x_A 80 TAVLAP 85 (88)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 999754
No 67
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.6e-21 Score=133.25 Aligned_cols=85 Identities=13% Similarity=0.154 Sum_probs=78.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
.....++|||+||++++++++|+++|+.||.|.++.++.++.+++++|||||+|.+.++|++|++.|||..|. ++.|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~--g~~l~ 88 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG--SRKVK 88 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEET--TEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeC--CeEEE
Confidence 4456789999999999999999999999999999999999999999999999999999999999999999995 69999
Q ss_pred EEeccCC
Q 037458 168 LNWATFS 174 (196)
Q Consensus 168 v~~a~~~ 174 (196)
|+|++..
T Consensus 89 V~~a~~~ 95 (98)
T 2cqp_A 89 LVLGSGP 95 (98)
T ss_dssp EEESSCS
T ss_pred EEEcCCC
Confidence 9998743
No 68
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.85 E-value=5.8e-21 Score=141.28 Aligned_cols=87 Identities=23% Similarity=0.397 Sum_probs=80.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
.....++|||+||+.++|+++|+++|+.||.|++|.|++++.++.++|||||+|.+.++|++||+.||+..|. ++.|+
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~~l~ 112 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLD--DRIIR 112 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEET--TEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC--CeEEE
Confidence 3456799999999999999999999999999999999999999999999999999999999999999999995 69999
Q ss_pred EEeccCCCC
Q 037458 168 LNWATFSTG 176 (196)
Q Consensus 168 v~~a~~~~~ 176 (196)
|+|++....
T Consensus 113 V~~a~~~~~ 121 (156)
T 1h2v_Z 113 TDWDAGFKE 121 (156)
T ss_dssp EEEESCCCT
T ss_pred EEECCCCCC
Confidence 999986543
No 69
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.85 E-value=2.1e-21 Score=135.61 Aligned_cols=87 Identities=24% Similarity=0.349 Sum_probs=74.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 87 SGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 87 ~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
+.....++|||+||+.++++++|+++|+.||.|.+|++++++.+|.++|||||+|.+.++|++|++.+ +..|. |+.|
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~--g~~l 96 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELD--SKTI 96 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEET--TEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCC--CEEE
Confidence 35567899999999999999999999999999999999999999999999999999999999999865 57774 7999
Q ss_pred EEEeccCCCC
Q 037458 167 RLNWATFSTG 176 (196)
Q Consensus 167 ~v~~a~~~~~ 176 (196)
+|+++.....
T Consensus 97 ~V~~a~~~~~ 106 (109)
T 2rs2_A 97 DPKVAFPRRA 106 (109)
T ss_dssp EEEECCCCCC
T ss_pred EEEEccCCCC
Confidence 9999986543
No 70
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.85 E-value=3.9e-21 Score=128.91 Aligned_cols=81 Identities=16% Similarity=0.384 Sum_probs=76.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNW 170 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~ 170 (196)
+.++|||+||+.++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|++|+ .|||..+. |+.|+|.+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~--g~~l~V~~ 81 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFR--GRQIKVIP 81 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEET--TEECEEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEEC--CcEEEEEE
Confidence 4689999999999999999999999999999999999999999999999999999999999 89999995 69999999
Q ss_pred ccCC
Q 037458 171 ATFS 174 (196)
Q Consensus 171 a~~~ 174 (196)
++..
T Consensus 82 a~~~ 85 (89)
T 3ucg_A 82 KRTN 85 (89)
T ss_dssp TTTT
T ss_pred ccCC
Confidence 9754
No 71
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=4.5e-21 Score=130.78 Aligned_cols=83 Identities=14% Similarity=0.201 Sum_probs=75.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHH----HHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCC
Q 037458 88 GGGENKTIWVGDLHHWMDENYLH----SCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTD 163 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~----~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~ 163 (196)
...+.++|||+||++++++++|+ ++|+.||.|.+|+|++|+.+ +|||||+|.+.++|++|++.|||..|. |
T Consensus 5 ~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~--g 79 (96)
T 2dgx_A 5 SSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIG--S 79 (96)
T ss_dssp CCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEET--T
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEEC--C
Confidence 34567899999999999999999 99999999999999999765 789999999999999999999999995 6
Q ss_pred ccEEEEeccCCC
Q 037458 164 QPFRLNWATFST 175 (196)
Q Consensus 164 ~~i~v~~a~~~~ 175 (196)
+.|+|+||+...
T Consensus 80 r~l~V~~a~~~~ 91 (96)
T 2dgx_A 80 KKILVSLATGAS 91 (96)
T ss_dssp EEEEEEECCCSS
T ss_pred eEEEEEEcCCCC
Confidence 999999997653
No 72
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.1e-21 Score=133.46 Aligned_cols=82 Identities=18% Similarity=0.302 Sum_probs=72.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCC--CCCCCCCcc
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTS--ILMPNTDQP 165 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g--~~~~~~~~~ 165 (196)
+....++|||+||++++|+++|+++|+.||.|++|+|+++ ||||||+|.+.++|++|++.|++ ..| .|+.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l--~Gr~ 83 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVL--RGQP 83 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEE--TTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceE--CCEE
Confidence 5567899999999999999999999999999999999876 48999999999999999998875 566 4799
Q ss_pred EEEEeccCCCCC
Q 037458 166 FRLNWATFSTGD 177 (196)
Q Consensus 166 i~v~~a~~~~~~ 177 (196)
|+|+||+.....
T Consensus 84 l~V~~A~~~~~~ 95 (105)
T 1sjq_A 84 IYIQFSNHKELK 95 (105)
T ss_dssp CCBCCCSSSSCC
T ss_pred EEEEEcCCCCCC
Confidence 999999865443
No 73
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=7.9e-21 Score=128.11 Aligned_cols=83 Identities=18% Similarity=0.262 Sum_probs=77.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
.....++|||+||++++++++|+++|+.| .|.+|+|+++ .+|+++|||||+|.+.++|.+|++ |||..|. ++.|+
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~--gr~i~ 80 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMG--GRYIE 80 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEET--TEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeC--CcEEE
Confidence 45678999999999999999999999999 9999999999 789999999999999999999999 9999995 69999
Q ss_pred EEeccCCC
Q 037458 168 LNWATFST 175 (196)
Q Consensus 168 v~~a~~~~ 175 (196)
|.+++...
T Consensus 81 v~~a~~~~ 88 (91)
T 2dgw_A 81 VFREKSGP 88 (91)
T ss_dssp EEEESSCC
T ss_pred EEECCcCC
Confidence 99998653
No 74
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.4e-20 Score=132.07 Aligned_cols=86 Identities=20% Similarity=0.420 Sum_probs=78.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCC------
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPN------ 161 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~------ 161 (196)
.....++|||+||+.++++++|+++|+.||.|.+|+|++++ ++.++|||||+|.+.++|++|++.|||..|.+
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 44567899999999999999999999999999999999998 89999999999999999999999999999853
Q ss_pred CCccEEEEeccCC
Q 037458 162 TDQPFRLNWATFS 174 (196)
Q Consensus 162 ~~~~i~v~~a~~~ 174 (196)
.++.|+|.|++..
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 2678999999854
No 75
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=8.9e-21 Score=131.97 Aligned_cols=86 Identities=16% Similarity=0.291 Sum_probs=77.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCC-eeEEEEe-ecCCCCCcccEEEEEEcCHHHHHHHHHHhC--CCCCCCCCc
Q 037458 89 GGENKTIWVGDLHHWMDENYLHSCFASTGE-IASIKVI-RNKQTGLSEGYGFVEFFTHATAEKVLQSYT--SILMPNTDQ 164 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~~te~~l~~~F~~~G~-i~~v~i~-~d~~tg~~~g~afV~F~~~~~A~~al~~l~--g~~~~~~~~ 164 (196)
+.+.++|||+||++++++++|+++|+.||. |.+|.++ .++.+|.++|||||+|.+.++|++|++.|+ +..+. ++
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~--g~ 82 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLW--GH 82 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBT--TB
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceec--CC
Confidence 356789999999999999999999999998 9999998 888899999999999999999999999996 47784 69
Q ss_pred cEEEEeccCCCC
Q 037458 165 PFRLNWATFSTG 176 (196)
Q Consensus 165 ~i~v~~a~~~~~ 176 (196)
.|+|+|++....
T Consensus 83 ~l~V~~a~~~~~ 94 (109)
T 2dis_A 83 QIAVDWAEPEID 94 (109)
T ss_dssp CCEEEESCSSCS
T ss_pred eEEEEEcCCCCC
Confidence 999999986543
No 76
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=4.6e-21 Score=132.62 Aligned_cols=81 Identities=12% Similarity=0.185 Sum_probs=75.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEE
Q 037458 89 GGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRL 168 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v 168 (196)
....++|||+||+.++|+++|+++|+.||.|.+|.|++|+. |.++|||||+|.+.++|.+||. +++..+. |+.|+|
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~--gr~l~V 83 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYK--ETDLLI 83 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCT--TTTCEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEEC--CEEEEE
Confidence 34678999999999999999999999999999999999987 9999999999999999999998 8999995 699999
Q ss_pred EeccC
Q 037458 169 NWATF 173 (196)
Q Consensus 169 ~~a~~ 173 (196)
.|+..
T Consensus 84 ~~~~~ 88 (103)
T 1s79_A 84 LFKDD 88 (103)
T ss_dssp EEHHH
T ss_pred EEchH
Confidence 98764
No 77
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.85 E-value=7.7e-21 Score=135.44 Aligned_cols=85 Identities=20% Similarity=0.309 Sum_probs=79.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
.....++|||+||+.++++++|+++|+.||.|.+|+|++++ +|+++|||||+|.+.++|++|++.|||..|. |+.|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~~l~ 107 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLD--GRPMD 107 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESS--SCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEEC--CcEEE
Confidence 45677899999999999999999999999999999999998 8999999999999999999999999999995 69999
Q ss_pred EEeccCCC
Q 037458 168 LNWATFST 175 (196)
Q Consensus 168 v~~a~~~~ 175 (196)
|+||....
T Consensus 108 V~~a~~~~ 115 (124)
T 2kt5_A 108 IQLVASQI 115 (124)
T ss_dssp EEEECCTT
T ss_pred EEEeCCCC
Confidence 99998643
No 78
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.85 E-value=2.6e-21 Score=149.35 Aligned_cols=105 Identities=19% Similarity=0.309 Sum_probs=87.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEE
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLN 169 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~ 169 (196)
...++|||+||+.++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++.|++..|. ++.|+|.
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~--g~~l~v~ 103 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLG--GRNIKVG 103 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC---CCCEEE
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeC--CeeEEEe
Confidence 45689999999999999999999999999999999999989999999999999999999999999999995 6999999
Q ss_pred eccCCCCCCC------CCCCCCceEEecCCCCC
Q 037458 170 WATFSTGDKR------SDNGPDLSIFVGDLAAD 196 (196)
Q Consensus 170 ~a~~~~~~~~------~~~~~~~~ifV~nL~~d 196 (196)
++........ .......+|||+||+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~ 136 (216)
T 2qfj_A 104 RPSNIGQAQPIIDQLAEEARAFNRIYVASVHQD 136 (216)
T ss_dssp CCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTT
T ss_pred cCCCccccchhhhhhhcccCCCcEEEEeCCCCc
Confidence 8775421110 11245679999999974
No 79
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.7e-20 Score=130.71 Aligned_cols=87 Identities=20% Similarity=0.287 Sum_probs=77.1
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 87 SGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 87 ~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
......++|||+||+.++++++|+++|+.||.|.+|+|..+ +.++|||||+|.+.++|++||+.||+..|. ++.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l 91 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYD--GYRL 91 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEET--TEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEEC--CeEE
Confidence 34567899999999999999999999999999999999654 568899999999999999999999999995 6999
Q ss_pred EEEeccCCCCCC
Q 037458 167 RLNWATFSTGDK 178 (196)
Q Consensus 167 ~v~~a~~~~~~~ 178 (196)
+|+|++......
T Consensus 92 ~V~~a~~~~~~~ 103 (109)
T 1x4a_A 92 RVEFPRSGRGTG 103 (109)
T ss_dssp EEECCCCCCCCC
T ss_pred EEEEcccCCCCC
Confidence 999998765443
No 80
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.85 E-value=1.6e-21 Score=132.49 Aligned_cols=83 Identities=12% Similarity=0.140 Sum_probs=75.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEE
Q 037458 89 GGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRL 168 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v 168 (196)
....++|||+||++++++++|+++|+.||.|.++.++.++.+++++|||||+|.+.++|++|++.||+..|. ++.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~--gr~l~v 89 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG--SRKVKL 89 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET--TEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeEC--CcEEEE
Confidence 345689999999999999999999999999999999999999999999999999999999999999999995 699999
Q ss_pred EeccC
Q 037458 169 NWATF 173 (196)
Q Consensus 169 ~~a~~ 173 (196)
++++.
T Consensus 90 ~~a~s 94 (95)
T 2ek1_A 90 SGPSS 94 (95)
T ss_dssp ECCC-
T ss_pred EeccC
Confidence 99874
No 81
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.9e-20 Score=129.11 Aligned_cols=86 Identities=22% Similarity=0.300 Sum_probs=77.6
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 87 SGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 87 ~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
......++|||+||++++++++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|++||+ ++..|. |+.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~--g~~l 85 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMID--GRWC 85 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEET--TEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeC--CeEE
Confidence 345678899999999999999999999999999999999999999999999999999999999997 566774 6999
Q ss_pred EEEeccCCCC
Q 037458 167 RLNWATFSTG 176 (196)
Q Consensus 167 ~v~~a~~~~~ 176 (196)
+|.|++....
T Consensus 86 ~v~~a~~~~~ 95 (103)
T 2cqg_A 86 DCKLPNSKQS 95 (103)
T ss_dssp EEECCCTTCC
T ss_pred EEEecCCCCc
Confidence 9999986543
No 82
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.84 E-value=1.2e-20 Score=139.61 Aligned_cols=86 Identities=19% Similarity=0.358 Sum_probs=80.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
.....++|||+||++++++++|+++|+.||.|.+|+|++|+.+|+++|||||+|.+.++|++||+.|||..|. |+.|+
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~ 143 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD--GRELR 143 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESS--SSEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC--CeEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999995 69999
Q ss_pred EEeccCCC
Q 037458 168 LNWATFST 175 (196)
Q Consensus 168 v~~a~~~~ 175 (196)
|.|++...
T Consensus 144 v~~a~~~~ 151 (158)
T 2kn4_A 144 VQMARYGR 151 (158)
T ss_dssp EEEECCSS
T ss_pred EEECCCCC
Confidence 99998653
No 83
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.84 E-value=2.8e-21 Score=125.65 Aligned_cols=75 Identities=23% Similarity=0.315 Sum_probs=71.4
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEec
Q 037458 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWA 171 (196)
Q Consensus 94 ~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~a 171 (196)
+|||+|||.++++++|+++|+.||.|.+|.+++++.+++++|||||+|.+.++|++|++ +++..+. |+.|+|.||
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~--g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEIN--NKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSS--SCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEEC--CEEEEEEeC
Confidence 59999999999999999999999999999999999899999999999999999999997 9999995 699999886
No 84
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.84 E-value=2.1e-21 Score=133.40 Aligned_cols=82 Identities=18% Similarity=0.298 Sum_probs=74.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecC-CCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 89 GGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNK-QTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~-~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
....++|||+||+.++++++|+++|+.|| |.+|+|++++ .+|+++|||||+|.+.++|++|+ .|+|..|. |+.|+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~--g~~l~ 91 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG--NRRIR 91 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBT--TBCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEEC--CeEEE
Confidence 35689999999999999999999999999 9999999998 68999999999999999999999 89999995 69999
Q ss_pred EEeccCC
Q 037458 168 LNWATFS 174 (196)
Q Consensus 168 v~~a~~~ 174 (196)
|+|++..
T Consensus 92 V~~a~~~ 98 (100)
T 2j76_E 92 VDVADQA 98 (100)
T ss_dssp CEECCCS
T ss_pred EEeccCC
Confidence 9998754
No 85
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.84 E-value=3e-21 Score=139.79 Aligned_cols=86 Identities=19% Similarity=0.358 Sum_probs=80.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
.....++|||+||+.++++++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|++||+.|||..|. ++.|+
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~--g~~l~ 120 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD--GRELR 120 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSS--SSCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC--CEEEE
Confidence 4456789999999999999999999999999999999999999999999999999999999999999999995 69999
Q ss_pred EEeccCCC
Q 037458 168 LNWATFST 175 (196)
Q Consensus 168 v~~a~~~~ 175 (196)
|+|++...
T Consensus 121 V~~a~~~~ 128 (135)
T 2lea_A 121 VQMARYGR 128 (135)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99998654
No 86
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=6.4e-21 Score=133.07 Aligned_cols=85 Identities=22% Similarity=0.369 Sum_probs=77.4
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCcc
Q 037458 86 GSGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQP 165 (196)
Q Consensus 86 ~~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~ 165 (196)
.......++|||+||+.++++++|+++|+.||.|.+|++++++ +.++|||||+|.+.++|++|++.|||..+. |+.
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~--g~~ 98 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVE--GRK 98 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEET--TEE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEEC--CEE
Confidence 3455678999999999999999999999999999999999986 458999999999999999999999999995 699
Q ss_pred EEEEeccCC
Q 037458 166 FRLNWATFS 174 (196)
Q Consensus 166 i~v~~a~~~ 174 (196)
|+|+|++..
T Consensus 99 l~V~~a~~~ 107 (109)
T 2err_A 99 IEVNNATAR 107 (109)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999999754
No 87
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.84 E-value=7.1e-21 Score=137.97 Aligned_cols=84 Identities=25% Similarity=0.455 Sum_probs=77.9
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCcc
Q 037458 86 GSGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQP 165 (196)
Q Consensus 86 ~~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~ 165 (196)
.......++|||+||+.++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|++|++.|||..|. |+.
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~ 134 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF--GRT 134 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEET--TEE
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEEC--CEE
Confidence 345567899999999999999999999999999999999999999999999999999999999999999999995 699
Q ss_pred EEEEec
Q 037458 166 FRLNWA 171 (196)
Q Consensus 166 i~v~~a 171 (196)
|+|+||
T Consensus 135 l~v~~A 140 (140)
T 2ku7_A 135 IRVNLA 140 (140)
T ss_dssp EEEEC-
T ss_pred EEEEeC
Confidence 999986
No 88
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.7e-20 Score=128.90 Aligned_cols=85 Identities=15% Similarity=0.112 Sum_probs=72.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
.....++|||+||++++++++|+++|+.||.|.+|.++++ ||||||+|.+.++|++|++.|++..+...|+.|+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4456799999999999999999999999999999999865 4899999999999999999987765222579999
Q ss_pred EEeccCCCCCC
Q 037458 168 LNWATFSTGDK 178 (196)
Q Consensus 168 v~~a~~~~~~~ 178 (196)
|+|++.....+
T Consensus 85 V~~a~~~~~~~ 95 (104)
T 1wex_A 85 FNYSTSKRITR 95 (104)
T ss_dssp EEECSSSSCCC
T ss_pred EEEccCccccC
Confidence 99998754443
No 89
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.6e-21 Score=135.14 Aligned_cols=83 Identities=16% Similarity=0.325 Sum_probs=77.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEE
Q 037458 89 GGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRL 168 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v 168 (196)
....++|||+||+.++++++|+++|+.||.|.+|+|++|+.++.++|||||+|.+.++|++|| .|||..|. |+.|+|
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~--g~~l~V 98 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLL--GVPIIV 98 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEET--TEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeC--CeEEEE
Confidence 345789999999999999999999999999999999999999999999999999999999999 89999995 699999
Q ss_pred EeccCC
Q 037458 169 NWATFS 174 (196)
Q Consensus 169 ~~a~~~ 174 (196)
.|++..
T Consensus 99 ~~a~~~ 104 (114)
T 2cq4_A 99 QASQAE 104 (114)
T ss_dssp EEHHHH
T ss_pred EecCCC
Confidence 998753
No 90
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.84 E-value=1.1e-20 Score=134.56 Aligned_cols=83 Identities=17% Similarity=0.382 Sum_probs=77.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEE
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLN 169 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~ 169 (196)
...++|||+||+.++++++|+++|+.||.|.+|++++++.++.++|||||+|.+.++|++|+ .|||..|. |+.|+|+
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~--g~~l~V~ 110 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFR--GRTIKVL 110 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEET--TEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeEC--CeEEEEE
Confidence 34689999999999999999999999999999999999999999999999999999999999 79999995 6999999
Q ss_pred eccCCC
Q 037458 170 WATFST 175 (196)
Q Consensus 170 ~a~~~~ 175 (196)
|++...
T Consensus 111 ~a~~~~ 116 (124)
T 2jwn_A 111 PKRTNM 116 (124)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 998643
No 91
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.84 E-value=1.4e-21 Score=131.45 Aligned_cols=80 Identities=20% Similarity=0.378 Sum_probs=73.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEecc
Q 037458 93 KTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWAT 172 (196)
Q Consensus 93 ~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~a~ 172 (196)
++|||+||+.++++++|+++|+.||.|.+|++++++.+|+++|||||+|.+.+ |.+|+..|||..+. |+.|+|+||.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~--g~~l~V~~a~ 78 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFM--GRTIRVTEAN 78 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCS--SSSCSEEEC-
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEEC--CeEEEEEEcC
Confidence 68999999999999999999999999999999999999999999999999999 99999999999995 6999999998
Q ss_pred CCC
Q 037458 173 FST 175 (196)
Q Consensus 173 ~~~ 175 (196)
...
T Consensus 79 ~~~ 81 (90)
T 2ki2_A 79 PKK 81 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 643
No 92
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1e-20 Score=133.18 Aligned_cols=86 Identities=17% Similarity=0.317 Sum_probs=78.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEE
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLN 169 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~ 169 (196)
...++|||+||++++++++|+++|+.||.|.+|.|++++.+++++|||||+|.+.++|++||+. ++..|. ++.|+|+
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~--g~~l~V~ 101 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSID--GRVVEPK 101 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEET--TEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEEC--CEEEEEE
Confidence 4568999999999999999999999999999999999999999999999999999999999987 998885 6999999
Q ss_pred eccCCCCCC
Q 037458 170 WATFSTGDK 178 (196)
Q Consensus 170 ~a~~~~~~~ 178 (196)
|++......
T Consensus 102 ~a~~~~~~~ 110 (116)
T 1x4b_A 102 RAVAREESG 110 (116)
T ss_dssp CCSSCCCCC
T ss_pred ECCCCccCC
Confidence 998765443
No 93
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.84 E-value=1.7e-20 Score=140.22 Aligned_cols=88 Identities=24% Similarity=0.412 Sum_probs=79.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
.....++|||+||++++++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|. |+.|+
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~~l~ 145 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM--GQTIQ 145 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEET--TEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEEC--CEEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999995 69999
Q ss_pred EEeccCCCCC
Q 037458 168 LNWATFSTGD 177 (196)
Q Consensus 168 v~~a~~~~~~ 177 (196)
|.|++.....
T Consensus 146 V~~a~~~~~~ 155 (165)
T 1rk8_A 146 VDWCFVKGPK 155 (165)
T ss_dssp EEESEECC--
T ss_pred EEEecCCCCC
Confidence 9999865443
No 94
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.84 E-value=7.5e-21 Score=149.36 Aligned_cols=81 Identities=21% Similarity=0.375 Sum_probs=75.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcC--CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEE
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFASTG--EIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRL 168 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~~~G--~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v 168 (196)
..++|||+||++++|+++|+++|+.|| .|++|+|++|+.|++++|||||+|.+.++|++||+.||+..|. ++.|+|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~--Gr~l~V 144 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH--GQNPVV 144 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBT--TBCCEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeEC--CEEeEE
Confidence 678999999999999999999999999 9999999999999999999999999999999999999999995 699999
Q ss_pred EeccC
Q 037458 169 NWATF 173 (196)
Q Consensus 169 ~~a~~ 173 (196)
.|++.
T Consensus 145 ~~a~~ 149 (229)
T 3q2s_C 145 TPVNK 149 (229)
T ss_dssp EECCH
T ss_pred EECCC
Confidence 99864
No 95
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.84 E-value=2.3e-20 Score=144.23 Aligned_cols=77 Identities=16% Similarity=0.264 Sum_probs=70.9
Q ss_pred CCCCEEEEcCCC-CCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEE
Q 037458 90 GENKTIWVGDLH-HWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRL 168 (196)
Q Consensus 90 ~~~~~lfVgnLp-~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v 168 (196)
.+.++|||+||+ +++++++|+++|+.||.|.+|++++++ +|||||+|.+.++|++||+.|||..+. |+.|+|
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~--g~~l~v 74 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMF--GQKMNV 74 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEET--TEECEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEEC--CceEEE
Confidence 357899999999 899999999999999999999998763 699999999999999999999999995 699999
Q ss_pred EeccC
Q 037458 169 NWATF 173 (196)
Q Consensus 169 ~~a~~ 173 (196)
.|++.
T Consensus 75 ~~s~~ 79 (205)
T 3tyt_A 75 CVSKQ 79 (205)
T ss_dssp EECSC
T ss_pred EEccC
Confidence 99874
No 96
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=4.3e-21 Score=125.25 Aligned_cols=76 Identities=26% Similarity=0.408 Sum_probs=71.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEec
Q 037458 93 KTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWA 171 (196)
Q Consensus 93 ~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~a 171 (196)
++|||+|||.++++++|+++|+.||.|.+|.+++++.+|+++|||||+|.+.++|++|++.++ ..+. |+.|+|+||
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~--g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELD--SKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCS--SCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccC--CEEEEEEec
Confidence 579999999999999999999999999999999999999999999999999999999999888 7774 699999987
No 97
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=7e-20 Score=123.23 Aligned_cols=80 Identities=18% Similarity=0.332 Sum_probs=72.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
.....++|||+||+.++++++|+++|+.||.|.+|+++ +|||||+|.+.++|++|++.||+..+. ++.|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~ 73 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLH--GVNIN 73 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCS--SCBCE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccC--CcEEE
Confidence 44678999999999999999999999999999999987 479999999999999999999999995 69999
Q ss_pred EEeccCCCCC
Q 037458 168 LNWATFSTGD 177 (196)
Q Consensus 168 v~~a~~~~~~ 177 (196)
|+|++.....
T Consensus 74 v~~a~~~~~~ 83 (90)
T 2dnq_A 74 VEASKNKSKA 83 (90)
T ss_dssp EECSSCCCCC
T ss_pred EEECCCCCCC
Confidence 9999876544
No 98
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.7e-20 Score=129.48 Aligned_cols=83 Identities=17% Similarity=0.139 Sum_probs=74.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
.....++|||+||++++|+++|+++|+.|| +++|+|++|+ +++++|||||+|.+.++|++||+ +|+..|. ++.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~--gr~i~ 85 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQ--HRYVE 85 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSS--SSCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeEC--CcEEE
Confidence 445678999999999999999999999999 5599999998 89999999999999999999995 7999985 68999
Q ss_pred EEeccCCC
Q 037458 168 LNWATFST 175 (196)
Q Consensus 168 v~~a~~~~ 175 (196)
|.++....
T Consensus 86 V~~~~~~~ 93 (102)
T 1wez_A 86 LFLNSTAG 93 (102)
T ss_dssp EEEECCCC
T ss_pred EEECCCCC
Confidence 99987654
No 99
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.83 E-value=1.5e-20 Score=128.77 Aligned_cols=81 Identities=16% Similarity=0.129 Sum_probs=71.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
...+.++|||+||++++|+++|+++|+.||.|.+|+++++ ||||||+|.+.++|.+|++.|++..+...|+.|+
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 4457899999999999999999999999999999999864 4899999999999999999999986332579999
Q ss_pred EEeccCC
Q 037458 168 LNWATFS 174 (196)
Q Consensus 168 v~~a~~~ 174 (196)
|+|++..
T Consensus 91 V~~S~~k 97 (100)
T 3r27_A 91 VNYSTSQ 97 (100)
T ss_dssp EEECSCS
T ss_pred EEecccc
Confidence 9999753
No 100
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.2e-20 Score=130.15 Aligned_cols=82 Identities=15% Similarity=0.156 Sum_probs=71.9
Q ss_pred CCCCCCEEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 88 GGGENKTIWVGDLHH-WMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~-~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
...+.++|||+||++ ++++++|+++|+.||.|.+|.|++++ |||||+|.+.++|++|++.|++......|+.|
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 445789999999999 99999999999999999999998764 79999999999999999999876522257999
Q ss_pred EEEeccCCC
Q 037458 167 RLNWATFST 175 (196)
Q Consensus 167 ~v~~a~~~~ 175 (196)
+|+||+...
T Consensus 85 ~V~~a~~~~ 93 (102)
T 1x4d_A 85 RVHLSQKYK 93 (102)
T ss_dssp EEEEECCCT
T ss_pred EEEECCCCC
Confidence 999998643
No 101
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.83 E-value=6e-20 Score=147.62 Aligned_cols=83 Identities=27% Similarity=0.416 Sum_probs=75.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHH----HHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCC
Q 037458 88 GGGENKTIWVGDLHHWMDENYLH----SCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTD 163 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~----~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~ 163 (196)
+....++|||+||+.++++++|+ ++|+.||.|.+|++++ +++++|||||+|.+.++|++|++.|||..|. |
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g 79 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFY--D 79 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeC--C
Confidence 45678999999999999999976 8999999999999876 5889999999999999999999999999995 6
Q ss_pred ccEEEEeccCCC
Q 037458 164 QPFRLNWATFST 175 (196)
Q Consensus 164 ~~i~v~~a~~~~ 175 (196)
+.|+|+|++...
T Consensus 80 ~~l~v~~a~~~~ 91 (282)
T 3pgw_A 80 KPMRIQYAKTDS 91 (282)
T ss_pred cEEEEEEeccCc
Confidence 999999997644
No 102
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.83 E-value=4.5e-20 Score=132.21 Aligned_cols=83 Identities=13% Similarity=0.281 Sum_probs=73.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHH----HHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCC
Q 037458 88 GGGENKTIWVGDLHHWMDENYLH----SCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTD 163 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~----~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~ 163 (196)
.....++|||+||++++++++|+ ++|+.||.|.+|.+.+ +++++|||||+|.+.++|.+|++.|||..|. |
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~--g 99 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQ--G 99 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCT--T
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeC--C
Confidence 34567899999999999999876 7999999999988753 5789999999999999999999999999995 6
Q ss_pred ccEEEEeccCCC
Q 037458 164 QPFRLNWATFST 175 (196)
Q Consensus 164 ~~i~v~~a~~~~ 175 (196)
+.|+|+||+...
T Consensus 100 r~l~V~~a~~~~ 111 (127)
T 2a3j_A 100 NPLVITFSETPQ 111 (127)
T ss_dssp SCCEEEECCCCC
T ss_pred CEEEEEEccCcc
Confidence 999999998653
No 103
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3e-20 Score=128.56 Aligned_cols=83 Identities=14% Similarity=0.181 Sum_probs=75.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeE-EEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIAS-IKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~-v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
.....++|||+||++++++++|+++|+.||.|.+ |.|+.+ .+|+++|||||+|.+.++|++||+. ++..|. ++.|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~--gr~i 86 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIG--HRYI 86 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSS--SSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhC--CcEE
Confidence 3456789999999999999999999999999987 888888 7899999999999999999999986 998885 6899
Q ss_pred EEEeccCC
Q 037458 167 RLNWATFS 174 (196)
Q Consensus 167 ~v~~a~~~ 174 (196)
+|.+++..
T Consensus 87 ~v~~~~~~ 94 (104)
T 1wg5_A 87 EIFKSSRA 94 (104)
T ss_dssp EEEEECTT
T ss_pred EEEECCHH
Confidence 99998754
No 104
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=4.2e-20 Score=127.05 Aligned_cols=85 Identities=22% Similarity=0.417 Sum_probs=76.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
.....++|||+||+.++++++|+++|+.| .+|.+++++.+++++|||||+|.+.++|++||+.||+..|. ++.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~ 85 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID--GNKVT 85 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET--TEECE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeEC--CeEEE
Confidence 45678999999999999999999999977 47888999889999999999999999999999999999995 69999
Q ss_pred EEeccCCCCC
Q 037458 168 LNWATFSTGD 177 (196)
Q Consensus 168 v~~a~~~~~~ 177 (196)
|+|++.....
T Consensus 86 V~~a~~~~~~ 95 (102)
T 2fc8_A 86 LDWAKPKGEG 95 (102)
T ss_dssp EEECCCCCSS
T ss_pred EEEecCCCCC
Confidence 9999876544
No 105
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1e-19 Score=124.15 Aligned_cols=82 Identities=16% Similarity=0.351 Sum_probs=73.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
.....++|||+||+.++++++|+++|+.||.|.+|.+.++ +|||||+|.+.++|++|++.||+..|.+.++.|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3456789999999999999999999999999999999765 5899999999999999999999999963379999
Q ss_pred EEeccCCC
Q 037458 168 LNWATFST 175 (196)
Q Consensus 168 v~~a~~~~ 175 (196)
|+|++...
T Consensus 87 V~~a~~~~ 94 (97)
T 1why_A 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99998653
No 106
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.83 E-value=4.2e-21 Score=131.93 Aligned_cols=84 Identities=15% Similarity=0.219 Sum_probs=76.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
.....++|||+||+.++++++|+++|+.||.|.+ .++.++.+++++|||||+|.+.++|++||+ |||..|. ++.|+
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~--g~~l~ 88 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVF--GNEIK 88 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBT--TBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEEC--CcEEE
Confidence 4456789999999999999999999999999988 777787889999999999999999999998 9999995 69999
Q ss_pred EEeccCCC
Q 037458 168 LNWATFST 175 (196)
Q Consensus 168 v~~a~~~~ 175 (196)
|+|++...
T Consensus 89 V~~a~~~~ 96 (101)
T 1fj7_A 89 LEKPKGRD 96 (101)
T ss_dssp EECCSCCC
T ss_pred EEEcCCCC
Confidence 99998653
No 107
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.83 E-value=7.2e-20 Score=135.85 Aligned_cols=82 Identities=15% Similarity=0.207 Sum_probs=73.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEE
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLN 169 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~ 169 (196)
....+|||+||++.+|+++|+++|++||.|++|.|..++ ++|||||+|.+.++|++|++.|||..|.+.++.|+|+
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 456779999999999999999999999999999986542 5689999999999999999999999997556999999
Q ss_pred eccCCC
Q 037458 170 WATFST 175 (196)
Q Consensus 170 ~a~~~~ 175 (196)
|++...
T Consensus 120 ~Ak~~~ 125 (164)
T 1sjr_A 120 FSKLTS 125 (164)
T ss_dssp ECSSSS
T ss_pred EecCCc
Confidence 998754
No 108
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=9.3e-20 Score=126.86 Aligned_cols=82 Identities=15% Similarity=0.175 Sum_probs=72.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCC---Ccc
Q 037458 89 GGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNT---DQP 165 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~---~~~ 165 (196)
....++|||+||++++++++|+++|+.||.|.+|.|+.| |||||+|.+.++|++||+.||+..|.+. ++.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 356789999999999999999999999999999999887 8999999999999999999999998521 189
Q ss_pred EEEEeccCCCCC
Q 037458 166 FRLNWATFSTGD 177 (196)
Q Consensus 166 i~v~~a~~~~~~ 177 (196)
|+|++++.....
T Consensus 85 i~V~~a~~~~~~ 96 (108)
T 1x4c_A 85 IRVKVDGPRSPS 96 (108)
T ss_dssp EEEEESSCCSCC
T ss_pred EEEEeCCCCCCC
Confidence 999999875443
No 109
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=4.2e-20 Score=126.89 Aligned_cols=85 Identities=29% Similarity=0.395 Sum_probs=75.3
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 87 SGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 87 ~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
+.....++|||+||+.++++++|+++|+.||.| +++.+ .+++++|||||+|.+.++|++|++.||+..|. ++.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l 83 (101)
T 2fc9_A 10 TWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIE--GRAI 83 (101)
T ss_dssp CCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEET--TEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeC--CeEE
Confidence 355678999999999999999999999999977 56666 67999999999999999999999999999995 6999
Q ss_pred EEEeccCCCCC
Q 037458 167 RLNWATFSTGD 177 (196)
Q Consensus 167 ~v~~a~~~~~~ 177 (196)
+|+|++.....
T Consensus 84 ~v~~a~~~~~~ 94 (101)
T 2fc9_A 84 RLELQGPRGSP 94 (101)
T ss_dssp EEEECSSCCCC
T ss_pred EEEEcCCCCCC
Confidence 99999876443
No 110
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.9e-20 Score=131.51 Aligned_cols=83 Identities=18% Similarity=0.300 Sum_probs=73.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCC--CCCCCCCcc
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTS--ILMPNTDQP 165 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g--~~~~~~~~~ 165 (196)
.....++|||+||++++++++|+++|+.||.|++|+|+++ ||||||+|++.++|++|++.|++ ..| .|+.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l--~Gr~ 98 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVL--RGQP 98 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCB--TTBC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceE--CCeE
Confidence 3456789999999999999999999999999999999986 48999999999999999998885 566 4799
Q ss_pred EEEEeccCCCCCC
Q 037458 166 FRLNWATFSTGDK 178 (196)
Q Consensus 166 i~v~~a~~~~~~~ 178 (196)
|+|+||+......
T Consensus 99 l~V~~a~~k~~~~ 111 (119)
T 2ad9_A 99 IYIQFSNHKELKT 111 (119)
T ss_dssp CEEEECSSSSCCC
T ss_pred EEEEEccCCCCCc
Confidence 9999998664443
No 111
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=2.5e-20 Score=130.40 Aligned_cols=86 Identities=10% Similarity=0.204 Sum_probs=77.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHH---HHHHhcCCeeEEEEeecCCCC---CcccEEEEEEcCHHHHHHHHHHhCCCCCCC
Q 037458 88 GGGENKTIWVGDLHHWMDENYLH---SCFASTGEIASIKVIRNKQTG---LSEGYGFVEFFTHATAEKVLQSYTSILMPN 161 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~---~~F~~~G~i~~v~i~~d~~tg---~~~g~afV~F~~~~~A~~al~~l~g~~~~~ 161 (196)
.....++|||+||++++++++|+ ++|+.||.|.+|.|++++.++ +++|||||+|.+.++|++||+.|||..|.
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~- 89 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD- 89 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET-
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC-
Confidence 34567899999999999999999 999999999999999988754 55699999999999999999999999995
Q ss_pred CCccEEEEeccCCC
Q 037458 162 TDQPFRLNWATFST 175 (196)
Q Consensus 162 ~~~~i~v~~a~~~~ 175 (196)
++.|+|+||+...
T Consensus 90 -gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 -GRTLKASLGTTKY 102 (111)
T ss_dssp -TEEEEEESCCCCS
T ss_pred -CEEEEEEeccccc
Confidence 6999999998764
No 112
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.82 E-value=9.7e-20 Score=142.67 Aligned_cols=80 Identities=18% Similarity=0.337 Sum_probs=73.4
Q ss_pred CCCCCCEEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 88 GGGENKTIWVGDLHH-WMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~-~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
.....++|||+||+. ++++++|+++|+.||.|.+|++++++ +|||||+|.+.++|++|++.|+|..+. ++.|
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~--g~~l 102 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLH--GKPI 102 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCS--SSBC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeEC--CeEE
Confidence 446789999999999 99999999999999999999999875 689999999999999999999999995 6999
Q ss_pred EEEeccCC
Q 037458 167 RLNWATFS 174 (196)
Q Consensus 167 ~v~~a~~~ 174 (196)
+|.|++..
T Consensus 103 ~v~~a~~~ 110 (229)
T 2adc_A 103 RITLSKHQ 110 (229)
T ss_dssp EEECCSCC
T ss_pred EEEEecCc
Confidence 99998754
No 113
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.82 E-value=2.8e-20 Score=128.93 Aligned_cols=82 Identities=24% Similarity=0.335 Sum_probs=74.3
Q ss_pred CCCCCCEEEEcCCCCCC------CHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCC
Q 037458 88 GGGENKTIWVGDLHHWM------DENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPN 161 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~------te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~ 161 (196)
.....++|||+||++++ ++++|+++|+.||.|.+|.++ +.+|+++|||||+|.+.++|.+|++.|||..|.
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~- 87 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD- 87 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS-
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC-
Confidence 34457899999999999 789999999999999999988 467999999999999999999999999999995
Q ss_pred CCc-cEEEEeccC
Q 037458 162 TDQ-PFRLNWATF 173 (196)
Q Consensus 162 ~~~-~i~v~~a~~ 173 (196)
|+ .|+|+|++.
T Consensus 88 -g~~~l~V~~a~~ 99 (105)
T 2nlw_A 88 -KQHTFRVNLFTD 99 (105)
T ss_dssp -TTCEEEEECSCC
T ss_pred -CCceEEEEEcch
Confidence 67 999999874
No 114
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.3e-20 Score=132.42 Aligned_cols=83 Identities=10% Similarity=0.085 Sum_probs=76.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCe-eEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEI-ASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i-~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
.....++|||+||++++|+++|+++|+.||.| .+|+|++|+ +|+++|||||+|.+.++|++||+. |+..|. ++.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~--gr~i 86 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLN--GREA 86 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEET--TEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccC--CeEE
Confidence 44567899999999999999999999999999 899999998 899999999999999999999986 999885 6999
Q ss_pred EEEeccCC
Q 037458 167 RLNWATFS 174 (196)
Q Consensus 167 ~v~~a~~~ 174 (196)
+|.+++..
T Consensus 87 ~v~~a~~~ 94 (114)
T 2cpy_A 87 FVHVVTLE 94 (114)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 99998753
No 115
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.2e-20 Score=126.80 Aligned_cols=82 Identities=15% Similarity=0.293 Sum_probs=71.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhC--CCCCCCCCcc
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYT--SILMPNTDQP 165 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~--g~~~~~~~~~ 165 (196)
.....++|||+||++++++++|+++|+.||.|.+|.++++ +|||||+|.+.++|++|++.|+ +..+ .|+.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~--~Gr~ 82 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHL--RNQP 82 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEE--TTEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceE--CCcE
Confidence 4456789999999999999999999999999999998876 5899999999999999999875 5556 4799
Q ss_pred EEEEeccCCCCC
Q 037458 166 FRLNWATFSTGD 177 (196)
Q Consensus 166 i~v~~a~~~~~~ 177 (196)
|+|+|++.....
T Consensus 83 l~V~~a~~~~~~ 94 (101)
T 2cq1_A 83 IYIQYSNHKELK 94 (101)
T ss_dssp CEEEECSCSSCC
T ss_pred EEEEEcCcccCc
Confidence 999999865433
No 116
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.82 E-value=2.1e-20 Score=132.31 Aligned_cols=82 Identities=16% Similarity=0.181 Sum_probs=75.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCC---eeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCc
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGE---IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQ 164 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~---i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~ 164 (196)
.....++|||+||++++|+++|+++|+.||. |.+|+|++|+. |+++|||||+|.+.++|++||+ ||+..|. ++
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~--gr 88 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMG--HR 88 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEET--TE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeEC--Ce
Confidence 4467899999999999999999999999999 89999999986 9999999999999999999998 9999995 69
Q ss_pred cEEEEeccC
Q 037458 165 PFRLNWATF 173 (196)
Q Consensus 165 ~i~v~~a~~ 173 (196)
.|+|.+++.
T Consensus 89 ~i~V~~a~~ 97 (118)
T 2db1_A 89 YIEVFKSHR 97 (118)
T ss_dssp EEEEEEECH
T ss_pred EEEEEECCH
Confidence 999999864
No 117
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.82 E-value=1.3e-19 Score=124.90 Aligned_cols=82 Identities=20% Similarity=0.370 Sum_probs=72.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 87 SGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 87 ~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
......++|||+||+.++++++|+++|+.||.|.+|.+++ +||||+|.+.++|++|++.||+..|. ++.|
T Consensus 6 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~--g~~l 75 (103)
T 2dgu_A 6 SGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLE--GENI 75 (103)
T ss_dssp CCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEET--TEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccC--CCEE
Confidence 3456779999999999999999999999999999999863 59999999999999999999999995 6999
Q ss_pred EEEeccCCCCCC
Q 037458 167 RLNWATFSTGDK 178 (196)
Q Consensus 167 ~v~~a~~~~~~~ 178 (196)
+|+|++.....+
T Consensus 76 ~v~~a~~~~~~~ 87 (103)
T 2dgu_A 76 EIVFAKPPDQKR 87 (103)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEcCCCcccc
Confidence 999998754433
No 118
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.8e-20 Score=131.68 Aligned_cols=88 Identities=19% Similarity=0.208 Sum_probs=74.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
.....++|||+||+.++++++|+++|+.||.|.++.+..+..+++++|||||+|.+.++|++|++.|||..|. ++.|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~--g~~l~ 98 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLY--GKILV 98 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCS--SCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeC--CcEEE
Confidence 3456789999999999999999999999999854433333337889999999999999999999999999994 79999
Q ss_pred EEeccCCCCC
Q 037458 168 LNWATFSTGD 177 (196)
Q Consensus 168 v~~a~~~~~~ 177 (196)
|+|++.....
T Consensus 99 v~~a~~~~~~ 108 (115)
T 2cpx_A 99 IEFGKNKKQR 108 (115)
T ss_dssp EEECCCCSCC
T ss_pred EEEccCCCCC
Confidence 9999876443
No 119
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.82 E-value=2.3e-20 Score=130.68 Aligned_cols=84 Identities=13% Similarity=0.022 Sum_probs=71.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcC-CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTG-EIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G-~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
.....++|||+||++++++++|+++|+.|| .|..+.+..+ .++|||||+|.+.++|++||+.|||..|. |+.|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~--Gr~i 97 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFR--GSVI 97 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEET--TEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEEC--CeEE
Confidence 345678999999999999999999999999 8999988533 47899999999999999999999999995 6999
Q ss_pred EEEeccCCCCC
Q 037458 167 RLNWATFSTGD 177 (196)
Q Consensus 167 ~v~~a~~~~~~ 177 (196)
+|++++.....
T Consensus 98 ~V~~a~~~p~~ 108 (111)
T 2jvr_A 98 TVERDDNPPPI 108 (111)
T ss_dssp EEEESCC----
T ss_pred EEEECCCCCCC
Confidence 99999865433
No 120
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.82 E-value=5.9e-20 Score=122.17 Aligned_cols=75 Identities=12% Similarity=0.177 Sum_probs=69.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEE
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLN 169 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~ 169 (196)
-....||||||++.+||++|+++|.+||+|.++++.. ++|||||+|.+.++|++|++.||+..+. ++.|+|+
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~--gr~I~V~ 76 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLA--NTTIFAE 76 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEET--TEEEEEE
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEEC--CcEEEEE
Confidence 3467899999999999999999999999999999966 4699999999999999999999999995 6999999
Q ss_pred ecc
Q 037458 170 WAT 172 (196)
Q Consensus 170 ~a~ 172 (196)
+|+
T Consensus 77 ~A~ 79 (89)
T 2wbr_A 77 SPS 79 (89)
T ss_dssp CCC
T ss_pred ECC
Confidence 985
No 121
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.82 E-value=2.4e-20 Score=128.11 Aligned_cols=78 Identities=21% Similarity=0.365 Sum_probs=70.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
.....++|||+||+.++++++|+++|+.||.|.+|++.+ ++|||||+|.+.++|++|++.|||..+. |+.|+
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~~l~ 94 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQ--GRNLR 94 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEET--TEECC
T ss_pred CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeEC--CeEEE
Confidence 334578999999999999999999999999999999973 4589999999999999999999999995 69999
Q ss_pred EEeccC
Q 037458 168 LNWATF 173 (196)
Q Consensus 168 v~~a~~ 173 (196)
|+|++.
T Consensus 95 V~~a~~ 100 (101)
T 2la4_A 95 TGWGKE 100 (101)
T ss_dssp CCBCCC
T ss_pred EEeccC
Confidence 999874
No 122
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=126.59 Aligned_cols=84 Identities=23% Similarity=0.442 Sum_probs=75.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
.....++|||+||+.++++++|+++|+.||.|.+|+++++ +|||||+|.+.++|++|++.|+|..|. |+.|+
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~ 92 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIE--GHVVK 92 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEET--TEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEEC--CcEEE
Confidence 3456789999999999999999999999999999999887 489999999999999999999999995 69999
Q ss_pred EEeccCCCCCCC
Q 037458 168 LNWATFSTGDKR 179 (196)
Q Consensus 168 v~~a~~~~~~~~ 179 (196)
|.|++.....++
T Consensus 93 v~~a~~~~~~~~ 104 (109)
T 1x4g_A 93 CYWGKESPDMTS 104 (109)
T ss_dssp EECCCCCCSSCC
T ss_pred EEecCCCCCCCC
Confidence 999987654433
No 123
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.82 E-value=1.4e-19 Score=145.68 Aligned_cols=103 Identities=15% Similarity=0.269 Sum_probs=92.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEE
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLN 169 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~ 169 (196)
...++|||+||+.++++++|+++|+.||.|.++++++++.+|.++|||||+|.+.++|.+|++.|+|..+. |+.|+|.
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~--g~~i~v~ 170 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLG--PRTLYVH 170 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEE
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeC--CcEEEEE
Confidence 35689999999999999999999999999999999999999999999999999999999999999999995 6999999
Q ss_pred eccCCCCCCCCCCCCCceEEecCCCCC
Q 037458 170 WATFSTGDKRSDNGPDLSIFVGDLAAD 196 (196)
Q Consensus 170 ~a~~~~~~~~~~~~~~~~ifV~nL~~d 196 (196)
|+...... .......+|||+|||++
T Consensus 171 ~a~~~~~~--~~~~~~~~l~v~nlp~~ 195 (284)
T 3smz_A 171 WTDAGQLT--PALLHSRCLCVDRLPPG 195 (284)
T ss_dssp ECCGGGCC--TTTTSCSEEEEECCCTT
T ss_pred ECCCCCCC--cccCCccEEEEecCCcc
Confidence 99865332 23456789999999974
No 124
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.5e-20 Score=134.07 Aligned_cols=82 Identities=17% Similarity=0.162 Sum_probs=75.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEE
Q 037458 89 GGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRL 168 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v 168 (196)
....++|||+||++++|+++|+++|+.||.|.++.++.+..+|+++|||||+|.+.++|++||+ ||+..|. ++.|+|
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~--gr~i~V 98 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMG--NRFIQV 98 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCST--TSCBEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeEC--CcEEEE
Confidence 4567899999999999999999999999999987777777899999999999999999999999 9999995 699999
Q ss_pred EeccC
Q 037458 169 NWATF 173 (196)
Q Consensus 169 ~~a~~ 173 (196)
.+++.
T Consensus 99 ~~a~~ 103 (124)
T 1wel_A 99 HPITK 103 (124)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 99875
No 125
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.82 E-value=2.4e-20 Score=135.18 Aligned_cols=82 Identities=16% Similarity=0.161 Sum_probs=76.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCC---eeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCc
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGE---IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQ 164 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~---i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~ 164 (196)
.....++|||+||++++|+++|+++|+.||. |.+|+|++|+. |+++|||||+|.+.++|++||+ ||+..|. ++
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~--gr 115 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMG--HR 115 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESS--SS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEEC--CE
Confidence 4456889999999999999999999999999 89999999987 9999999999999999999999 9999995 69
Q ss_pred cEEEEeccC
Q 037458 165 PFRLNWATF 173 (196)
Q Consensus 165 ~i~v~~a~~ 173 (196)
.|+|.+++.
T Consensus 116 ~i~V~~a~~ 124 (136)
T 2hgl_A 116 YIEVFKSHR 124 (136)
T ss_dssp EEEEEECCH
T ss_pred EEEEEECCh
Confidence 999999864
No 126
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.82 E-value=5.8e-21 Score=141.75 Aligned_cols=97 Identities=24% Similarity=0.463 Sum_probs=83.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNW 170 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~ 170 (196)
+.++|||+|||.++|+++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|.+|++ ++..+. |+.|+|.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~--g~~i~v~~ 77 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILD--GKVIDPKR 77 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEET--TEECCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccC--CeEccccc
Confidence 46899999999999999999999999999999999999999999999999999999999998 355664 68888888
Q ss_pred ccCCCCCCCCCCCCCceEEecCCCCC
Q 037458 171 ATFSTGDKRSDNGPDLSIFVGDLAAD 196 (196)
Q Consensus 171 a~~~~~~~~~~~~~~~~ifV~nL~~d 196 (196)
+..... .....+|||+||+.+
T Consensus 78 ~~~~~~-----~~~~~~l~V~nlp~~ 98 (167)
T 2cjk_A 78 AIPRDE-----QDKTGKIFVGGIGPD 98 (167)
T ss_dssp CCCHHH-----HHHCEEEEEEEECTT
T ss_pred ccchhh-----ccCCCeEEECCCCCC
Confidence 764321 234568999999974
No 127
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=7.9e-20 Score=121.51 Aligned_cols=78 Identities=23% Similarity=0.445 Sum_probs=71.2
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHh-CCCCCCCCCcc
Q 037458 87 SGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSY-TSILMPNTDQP 165 (196)
Q Consensus 87 ~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l-~g~~~~~~~~~ 165 (196)
......++|||+||+.++++++|+++|+.||.|.+|+++++ +|||||+|.+.++|++|++.| ++..+. |+.
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~--g~~ 78 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVN--GRR 78 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEET--TEE
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeEC--CCE
Confidence 34567899999999999999999999999999999999875 489999999999999999988 999885 699
Q ss_pred EEEEecc
Q 037458 166 FRLNWAT 172 (196)
Q Consensus 166 i~v~~a~ 172 (196)
|+|+||+
T Consensus 79 l~v~~ak 85 (85)
T 2ytc_A 79 LNVKWGR 85 (85)
T ss_dssp CCEEECC
T ss_pred EEEEecC
Confidence 9999985
No 128
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=2e-19 Score=123.11 Aligned_cols=80 Identities=19% Similarity=0.364 Sum_probs=73.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
.....++|||+||+.++++++|+++|+.||.|.+|++.++ +|||||+|.+.++|++|++.|+|..|. ++.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~--g~~l~ 82 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLR--GKQLR 82 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBT--TBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeC--CceEE
Confidence 4456789999999999999999999999999999999865 489999999999999999999999995 69999
Q ss_pred EEeccCCC
Q 037458 168 LNWATFST 175 (196)
Q Consensus 168 v~~a~~~~ 175 (196)
|+|++...
T Consensus 83 v~~a~~~~ 90 (99)
T 2cpj_A 83 VRFACHSA 90 (99)
T ss_dssp EEESSCCS
T ss_pred EEEcCCCC
Confidence 99998653
No 129
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.81 E-value=1.7e-20 Score=130.39 Aligned_cols=83 Identities=13% Similarity=0.103 Sum_probs=76.2
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCC---eeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCC
Q 037458 87 SGGGENKTIWVGDLHHWMDENYLHSCFASTGE---IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTD 163 (196)
Q Consensus 87 ~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~---i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~ 163 (196)
......++|||+||++++|+++|+++|+.||. |.+|+|++|+. |+++|||||+|.+.++|++||+ +++..|. +
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~--g 81 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMG--Q 81 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSS--S
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeC--C
Confidence 35567899999999999999999999999988 89999999987 9999999999999999999998 9999985 6
Q ss_pred ccEEEEeccC
Q 037458 164 QPFRLNWATF 173 (196)
Q Consensus 164 ~~i~v~~a~~ 173 (196)
+.|+|.+++.
T Consensus 82 r~i~V~~a~~ 91 (107)
T 2lmi_A 82 RYVEVYEINN 91 (107)
T ss_dssp SCCCCEECCH
T ss_pred eEEEEEECCH
Confidence 8999999874
No 130
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.81 E-value=8.9e-20 Score=127.11 Aligned_cols=80 Identities=21% Similarity=0.426 Sum_probs=71.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 87 SGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 87 ~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
......++|||+||+.++++++|+++|+.||.|.+|.++ +|||||+|.+.++|++|++.|||..+. |+.|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~--g~~l 95 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFA--NQPL 95 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEET--TEEC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEEC--CeEE
Confidence 345678999999999999999999999999999999997 489999999999999999999999994 7999
Q ss_pred EEEeccCCCC
Q 037458 167 RLNWATFSTG 176 (196)
Q Consensus 167 ~v~~a~~~~~ 176 (196)
+|+|++....
T Consensus 96 ~V~~a~~~~~ 105 (108)
T 2jvo_A 96 EVVYSKLPAK 105 (108)
T ss_dssp EEESCSCCC-
T ss_pred EEEEecCCCC
Confidence 9999986543
No 131
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=1.1e-21 Score=138.18 Aligned_cols=89 Identities=21% Similarity=0.337 Sum_probs=81.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeE--------EEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCC
Q 037458 89 GGENKTIWVGDLHHWMDENYLHSCFASTGEIAS--------IKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMP 160 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~--------v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~ 160 (196)
..+.++|||+||+.++++++|+++|+.||.|.+ |++++|+.+++++|||||+|.+.++|++|++.|||..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 456789999999999999999999999999998 999999999999999999999999999999999999995
Q ss_pred CCCccEEEEeccCCCCCCC
Q 037458 161 NTDQPFRLNWATFSTGDKR 179 (196)
Q Consensus 161 ~~~~~i~v~~a~~~~~~~~ 179 (196)
++.|+|+|++......+
T Consensus 84 --g~~l~V~~a~~~~~~~~ 100 (116)
T 2lcw_A 84 --GNPIKVSFATRRADFNR 100 (116)
Confidence 69999999987654433
No 132
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.81 E-value=2e-20 Score=121.52 Aligned_cols=75 Identities=21% Similarity=0.332 Sum_probs=70.1
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEec
Q 037458 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWA 171 (196)
Q Consensus 94 ~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~a 171 (196)
+|||+||+.++++++|+++|+.||.|.+|.+++++.++.++|||||+|.+.++|++|++ +++..+. |+.|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~--g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVG--LSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBT--TBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeEC--CEEEEEEEC
Confidence 69999999999999999999999999999999999999999999999999999999998 4888885 688888875
No 133
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.4e-19 Score=121.10 Aligned_cols=80 Identities=15% Similarity=0.288 Sum_probs=72.6
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 87 SGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 87 ~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
......++|||+||+.++++++|+++|+.||.|.+|.+++ +||||+|.+.++|++|++.|||..|. ++.|
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~--g~~l 74 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQ--GKRM 74 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEET--TEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeC--CcEE
Confidence 4556789999999999999999999999999999999974 49999999999999999999999995 6999
Q ss_pred EEEeccCCCC
Q 037458 167 RLNWATFSTG 176 (196)
Q Consensus 167 ~v~~a~~~~~ 176 (196)
+|+|++....
T Consensus 75 ~V~~a~~~~~ 84 (92)
T 2dgt_A 75 HVQLSTSRLR 84 (92)
T ss_dssp EEEESSCCCS
T ss_pred EEEEccCCCC
Confidence 9999986543
No 134
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.81 E-value=2e-19 Score=126.31 Aligned_cols=80 Identities=13% Similarity=0.208 Sum_probs=73.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEE
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLN 169 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~ 169 (196)
...++|||+||+.++++++|+++|+.||.|.+|.++++ +.++|||||+|.+.++|.+|++.|||..+. |+.|+|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~v~ 80 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVS--NRYLVVL 80 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSS--SCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEEC--CeEEEEE
Confidence 56789999999999999999999999999999999876 455899999999999999999999999995 6999999
Q ss_pred eccCC
Q 037458 170 WATFS 174 (196)
Q Consensus 170 ~a~~~ 174 (196)
|++..
T Consensus 81 ~a~~~ 85 (115)
T 3lqv_A 81 YYNAN 85 (115)
T ss_dssp ECCHH
T ss_pred EecCC
Confidence 99753
No 135
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.3e-19 Score=120.64 Aligned_cols=80 Identities=19% Similarity=0.321 Sum_probs=72.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
.....++|||+||+.++++++|+++|+.||.|.+|++++ +||||+|.+.++|++|++.|||..+. ++.|+
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~ 74 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVK--GKRIN 74 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEET--TEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEEC--CcEEE
Confidence 446789999999999999999999999999999999974 49999999999999999999999995 69999
Q ss_pred EEeccCCCCC
Q 037458 168 LNWATFSTGD 177 (196)
Q Consensus 168 v~~a~~~~~~ 177 (196)
|+|++.....
T Consensus 75 v~~a~~~~~~ 84 (90)
T 2dnp_A 75 VELSTKGQKK 84 (90)
T ss_dssp EEESCCCCCC
T ss_pred EEECCCCCCC
Confidence 9999876433
No 136
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.7e-19 Score=122.01 Aligned_cols=80 Identities=14% Similarity=0.259 Sum_probs=71.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
.....++|||+||++++++++|+++|+.||.|. +.++.+ .++|||||+|.+.++|++|++.|||..|. |+.|+
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~ 87 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLG--TDTLR 87 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSS--SSCCE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEEC--CcEEE
Confidence 345578999999999999999999999999997 666654 57799999999999999999999999995 69999
Q ss_pred EEeccCC
Q 037458 168 LNWATFS 174 (196)
Q Consensus 168 v~~a~~~ 174 (196)
|+|++..
T Consensus 88 V~~a~~~ 94 (97)
T 2e5j_A 88 VALARQQ 94 (97)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9999864
No 137
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.81 E-value=3.7e-20 Score=122.28 Aligned_cols=73 Identities=23% Similarity=0.361 Sum_probs=66.3
Q ss_pred CCEEEEcCCCCCC------CHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCc-
Q 037458 92 NKTIWVGDLHHWM------DENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQ- 164 (196)
Q Consensus 92 ~~~lfVgnLp~~~------te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~- 164 (196)
.++|||+|||.++ ++++|+++|+.||.|.+|.+. +.+|+++|||||+|.+.++|++|++.|||..+. |+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~--g~~ 76 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD--KQH 76 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCS--SSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccC--Cce
Confidence 3789999999999 779999999999999999987 457999999999999999999999999999996 56
Q ss_pred cEEE
Q 037458 165 PFRL 168 (196)
Q Consensus 165 ~i~v 168 (196)
.|+|
T Consensus 77 ~l~V 80 (81)
T 2krb_A 77 TFRV 80 (81)
T ss_dssp CCCC
T ss_pred eEEe
Confidence 6765
No 138
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.5e-19 Score=123.13 Aligned_cols=80 Identities=14% Similarity=0.279 Sum_probs=70.0
Q ss_pred CCCCCCEEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 88 GGGENKTIWVGDLHH-WMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~-~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
...+.++|||+||++ ++++++|+++|+.||.|.+|.+. +|||||+|.+.++|++|++.|+|..+. |+.|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l 75 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNF--GKKL 75 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCB--TTTB
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeC--CcEE
Confidence 346788999999998 99999999999999999999984 589999999999999999999999995 6999
Q ss_pred EEEeccCCCCC
Q 037458 167 RLNWATFSTGD 177 (196)
Q Consensus 167 ~v~~a~~~~~~ 177 (196)
+|+|++.....
T Consensus 76 ~V~~a~~~~~~ 86 (96)
T 2kvi_A 76 ILEVSSSNARP 86 (96)
T ss_dssp CEEEEECCCC-
T ss_pred EEEEcCcCCCC
Confidence 99999865443
No 139
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.81 E-value=1.7e-19 Score=136.26 Aligned_cols=84 Identities=20% Similarity=0.315 Sum_probs=78.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
.....++|||+||++++++++|+++|+.||.|++|.|+.++ ++.++|||||+|.+.++|++|++.|||..|. ++.|+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~--Gr~l~ 160 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLD--GRPMD 160 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCS--SSBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEEC--CEEEE
Confidence 45667899999999999999999999999999999999998 8999999999999999999999999999995 69999
Q ss_pred EEeccCC
Q 037458 168 LNWATFS 174 (196)
Q Consensus 168 v~~a~~~ 174 (196)
|+||...
T Consensus 161 V~~a~~~ 167 (177)
T 2f3j_A 161 IQLVASQ 167 (177)
T ss_dssp EEEESSG
T ss_pred EEEecCC
Confidence 9998754
No 140
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.81 E-value=1.1e-20 Score=141.48 Aligned_cols=102 Identities=14% Similarity=0.204 Sum_probs=85.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
.....++|||+||+.++++++|+++|+.||.+.. .++++..++.++|||||+|.+.++|.+|+ .|+|..+. |+.|+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~--g~~l~ 84 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVF--GNEIK 84 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEET--TEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeC--CeEEE
Confidence 4567899999999999999999999999998766 34455567889999999999999999999 59999995 79999
Q ss_pred EEeccCCCCCCCCCCCCCceEEecCCCCC
Q 037458 168 LNWATFSTGDKRSDNGPDLSIFVGDLAAD 196 (196)
Q Consensus 168 v~~a~~~~~~~~~~~~~~~~ifV~nL~~d 196 (196)
|.|++..... ......+|||+||+.+
T Consensus 85 v~~~~~~~~~---~~~~~~~l~v~nlp~~ 110 (175)
T 1fje_B 85 LEKPKGRDSK---KVRAARTLLAKNLSFN 110 (175)
T ss_dssp EECCCCSSCS---TTGGGGEEEEESCCSS
T ss_pred EecCCCcccc---ccccCCEEEEeCCCCC
Confidence 9999864332 2345679999999974
No 141
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=7.7e-20 Score=127.96 Aligned_cols=80 Identities=13% Similarity=0.142 Sum_probs=69.5
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 89 GGENKTIWVGDLHHW-MDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~-~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
....++|||+||+++ +++++|+++|+.||.|.+|.|+++ +|||||+|.+.++|++|++.|++..+...|+.|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456889999999998 999999999999999999999754 5899999999999999999887543222579999
Q ss_pred EEeccCC
Q 037458 168 LNWATFS 174 (196)
Q Consensus 168 v~~a~~~ 174 (196)
|+||+..
T Consensus 96 V~~a~~~ 102 (112)
T 1x4f_A 96 VDLSEKY 102 (112)
T ss_dssp EEEECSC
T ss_pred EEECccc
Confidence 9999754
No 142
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.80 E-value=2.7e-19 Score=136.61 Aligned_cols=77 Identities=17% Similarity=0.318 Sum_probs=71.0
Q ss_pred CCCEEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEE
Q 037458 91 ENKTIWVGDLHH-WMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLN 169 (196)
Q Consensus 91 ~~~~lfVgnLp~-~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~ 169 (196)
+.++|||+||+. ++++++|+++|+.||.|.+|++++++ +|||||+|.+.++|.+|++.|+|..+. |+.|+|.
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~--g~~l~v~ 74 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLH--GKPIRIT 74 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCS--SCCCEEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeec--CeEEEEE
Confidence 468999999999 99999999999999999999998875 589999999999999999999999995 6999999
Q ss_pred eccCC
Q 037458 170 WATFS 174 (196)
Q Consensus 170 ~a~~~ 174 (196)
|++..
T Consensus 75 ~a~~~ 79 (198)
T 1qm9_A 75 LSKHQ 79 (198)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 98754
No 143
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.80 E-value=4.7e-20 Score=126.87 Aligned_cols=82 Identities=32% Similarity=0.593 Sum_probs=75.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
.....++|||+||+.++++++|+++|+.||.|.+|++++|+ +|+++|||||+|.+.++|++|++ ++..++ |+.|+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~--g~~l~ 79 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFH--GKKLK 79 (102)
T ss_dssp CEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEET--TEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeEC--CEEEE
Confidence 34567899999999999999999999999999999999998 89999999999999999999998 888885 68999
Q ss_pred EEeccCC
Q 037458 168 LNWATFS 174 (196)
Q Consensus 168 v~~a~~~ 174 (196)
|.++...
T Consensus 80 v~~a~~~ 86 (102)
T 2xs2_A 80 LGPAIRK 86 (102)
T ss_dssp EEEEEEC
T ss_pred EEECCcC
Confidence 9998754
No 144
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.80 E-value=4.2e-19 Score=121.28 Aligned_cols=77 Identities=16% Similarity=0.339 Sum_probs=69.9
Q ss_pred CCCCCCEEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 88 GGGENKTIWVGDLHH-WMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~-~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
.....++|||+||++ ++++++|+++|+.||.|.+|++. +|||||+|.+.++|.+|++.|||..+. |+.|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~~l 87 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNF--GKKL 87 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEET--TEEC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEEC--CEEE
Confidence 345789999999998 99999999999999999999983 589999999999999999999999995 6999
Q ss_pred EEEeccCC
Q 037458 167 RLNWATFS 174 (196)
Q Consensus 167 ~v~~a~~~ 174 (196)
+|+|++..
T Consensus 88 ~V~~a~~~ 95 (97)
T 2xnq_A 88 ILEVSSSN 95 (97)
T ss_dssp EEEECCCC
T ss_pred EEEecCCC
Confidence 99998854
No 145
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.80 E-value=1.2e-19 Score=123.60 Aligned_cols=83 Identities=27% Similarity=0.414 Sum_probs=74.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHH----HHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCC
Q 037458 88 GGGENKTIWVGDLHHWMDENYLH----SCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTD 163 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~----~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~ 163 (196)
+....++|||+||+.++++++|+ ++|+.||.|.+|.+.+ +|.++|||||+|.+.++|.+|++.|||..+. |
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g 78 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFY--D 78 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEET--T
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEEC--C
Confidence 34567899999999999999999 9999999999999874 4778899999999999999999999999995 6
Q ss_pred ccEEEEeccCCC
Q 037458 164 QPFRLNWATFST 175 (196)
Q Consensus 164 ~~i~v~~a~~~~ 175 (196)
+.|+|+|++...
T Consensus 79 ~~l~v~~a~~~~ 90 (97)
T 1nu4_A 79 KPMRIQYAKTDS 90 (97)
T ss_dssp EECEEEECSSCC
T ss_pred cEEEEEEccCCC
Confidence 999999998653
No 146
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.7e-19 Score=126.25 Aligned_cols=78 Identities=17% Similarity=0.248 Sum_probs=70.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEE
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLN 169 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~ 169 (196)
...++|||+||+.++++++|+++|+.||.|.+|.++. ++|||||+|.+.++|++|++.|||..|. ++.|+|+
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~~l~V~ 79 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFH--HVPLYLE 79 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSS--SSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEEC--CeEEEEE
Confidence 3568999999999999999999999999999999875 4589999999999999999999999995 6999999
Q ss_pred eccCCC
Q 037458 170 WATFST 175 (196)
Q Consensus 170 ~a~~~~ 175 (196)
|++...
T Consensus 80 ~a~~~~ 85 (111)
T 1whx_A 80 WAPIGV 85 (111)
T ss_dssp EEETTT
T ss_pred ECCCCc
Confidence 998643
No 147
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.80 E-value=3.3e-19 Score=127.70 Aligned_cols=83 Identities=14% Similarity=0.220 Sum_probs=72.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccE-EEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 89 GGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGY-GFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~-afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
.....+|||+||++.+|+++|+++|++||.|.+|.+..+. +|| |||+|.+.++|++|++.|||..|.+..+.|+
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~Lr 99 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 99 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEE
Confidence 3456678899999999999999999999999999887652 477 9999999999999999999999975458999
Q ss_pred EEeccCCCC
Q 037458 168 LNWATFSTG 176 (196)
Q Consensus 168 v~~a~~~~~ 176 (196)
|+|++...-
T Consensus 100 I~~ak~~~l 108 (130)
T 3zzy_A 100 IDFSKLTSL 108 (130)
T ss_dssp EEECSCSSC
T ss_pred EEecCCCce
Confidence 999987543
No 148
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.79 E-value=5.1e-19 Score=129.97 Aligned_cols=80 Identities=21% Similarity=0.297 Sum_probs=73.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
.....++|||+||++++++++|+++|+.||.|.+|+++++ ++|||||+|.+.++|.+|++.|||..|. |+.|+
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~ 141 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLC--GCRVR 141 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSS--SSCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEEC--CeEEE
Confidence 4467899999999999999999999999999999999877 4699999999999999999999999995 79999
Q ss_pred EEeccCC
Q 037458 168 LNWATFS 174 (196)
Q Consensus 168 v~~a~~~ 174 (196)
|+|++..
T Consensus 142 v~~a~~~ 148 (150)
T 2i2y_A 142 VELSNGE 148 (150)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9999854
No 149
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.4e-18 Score=118.82 Aligned_cols=80 Identities=20% Similarity=0.343 Sum_probs=71.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhc--CCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCcc
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFAST--GEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQP 165 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~--G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~ 165 (196)
.....++|||+||++++++++|+++|+.| |.|.+|++. +|||||+|.+.++|++|++.|||..|. ++.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~ 80 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLD--GSP 80 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEET--TEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeC--CcE
Confidence 34567899999999999999999999999 999998874 479999999999999999999999995 699
Q ss_pred EEEEeccCCCCC
Q 037458 166 FRLNWATFSTGD 177 (196)
Q Consensus 166 i~v~~a~~~~~~ 177 (196)
|+|+|++.....
T Consensus 81 l~v~~a~~~~~~ 92 (99)
T 2cpd_A 81 IEVTLAKPVDKD 92 (99)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEECCCCCCC
Confidence 999999876543
No 150
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.79 E-value=1.2e-19 Score=123.44 Aligned_cols=81 Identities=23% Similarity=0.308 Sum_probs=72.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
.....++|||+||+.++++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|++.|+|..|. |+.|+
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~ 84 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID--GRSVS 84 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEET--TEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC--CeEEE
Confidence 44578999999999999999999999999988766 246889999999999999999999999999995 69999
Q ss_pred EEeccCCC
Q 037458 168 LNWATFST 175 (196)
Q Consensus 168 v~~a~~~~ 175 (196)
|+|++...
T Consensus 85 v~~a~~~~ 92 (96)
T 1fjc_A 85 LYYTGEKG 92 (96)
T ss_dssp EEECSSSC
T ss_pred EEEcCCCC
Confidence 99998654
No 151
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.8e-19 Score=125.82 Aligned_cols=79 Identities=18% Similarity=0.278 Sum_probs=72.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEE
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLN 169 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~ 169 (196)
.+.++|||+||++++++++|+++|+.| .|.+|+|++|+. |+++|||||+|.+.++|++|| .+|+..|. ++.|+|.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~--gr~i~V~ 88 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMI--QRYVEVS 88 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEET--TEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeEC--CeEEEEE
Confidence 346799999999999999999999999 899999999975 999999999999999999999 69999995 6999998
Q ss_pred eccC
Q 037458 170 WATF 173 (196)
Q Consensus 170 ~a~~ 173 (196)
.+..
T Consensus 89 ~a~~ 92 (109)
T 2dnn_A 89 PATE 92 (109)
T ss_dssp ECCH
T ss_pred ECCc
Confidence 8764
No 152
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.79 E-value=9.1e-19 Score=122.09 Aligned_cols=76 Identities=20% Similarity=0.392 Sum_probs=69.5
Q ss_pred CCCCEEEEcCCCCC-CCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEE
Q 037458 90 GENKTIWVGDLHHW-MDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRL 168 (196)
Q Consensus 90 ~~~~~lfVgnLp~~-~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v 168 (196)
...++|||+||+++ +++++|+++|+.||.|.+|.+ ++|||||+|.+.++|++|++.|+|..|. ++.|+|
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~V 94 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLA--GQTLDI 94 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEET--TEECCE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEEC--CeEEEE
Confidence 45689999999999 999999999999999999998 3589999999999999999999999995 699999
Q ss_pred EeccCCC
Q 037458 169 NWATFST 175 (196)
Q Consensus 169 ~~a~~~~ 175 (196)
+|++...
T Consensus 95 ~~a~~~~ 101 (110)
T 1wf1_A 95 NMAGEPK 101 (110)
T ss_dssp EESCCCC
T ss_pred EECCCCC
Confidence 9998543
No 153
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.79 E-value=9.6e-19 Score=129.20 Aligned_cols=84 Identities=31% Similarity=0.539 Sum_probs=78.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
.....++|||+||+.++++++|+++|+.||.|.++.+++++.+|.++|||||+|.+.++|.+|++.|||..+. |+.|+
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~i~ 160 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN--GRPLR 160 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET--TEECE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccC--CcEEE
Confidence 4456789999999999999999999999999999999999999999999999999999999999999999995 79999
Q ss_pred EEeccC
Q 037458 168 LNWATF 173 (196)
Q Consensus 168 v~~a~~ 173 (196)
|+||+.
T Consensus 161 v~~a~~ 166 (166)
T 3md3_A 161 INWAAK 166 (166)
T ss_dssp EEESCC
T ss_pred EEecCC
Confidence 999873
No 154
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=9.3e-19 Score=118.68 Aligned_cols=79 Identities=19% Similarity=0.306 Sum_probs=70.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEE
Q 037458 89 GGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRL 168 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v 168 (196)
....++|||+||++++++++|+++|+.||.|.+| +.++.+++ ||||+|.+.++|++|++ |||..|. |+.|+|
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~--g~~l~V 76 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLG--GHRLRV 76 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEET--TEECCC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEEC--CEEEEE
Confidence 3456899999999999999999999999999987 66666665 99999999999999999 9999995 699999
Q ss_pred EeccCCC
Q 037458 169 NWATFST 175 (196)
Q Consensus 169 ~~a~~~~ 175 (196)
+++....
T Consensus 77 ~~a~~~~ 83 (94)
T 2e5g_A 77 RPREQKE 83 (94)
T ss_dssp BCSCCSC
T ss_pred EECCcCC
Confidence 9987543
No 155
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.9e-19 Score=118.99 Aligned_cols=81 Identities=14% Similarity=0.332 Sum_probs=70.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCC-eeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCC-CCCCCCCcc
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGE-IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTS-ILMPNTDQP 165 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~-i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g-~~~~~~~~~ 165 (196)
.....++|||+||+.++++++|+++|+.||. |..+.+. ++|||||+|.+.++|++|++.||| ..+. ++.
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~--g~~ 74 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELH--GKI 74 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEET--TEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeEC--CEE
Confidence 3457789999999999999999999999999 6666553 358999999999999999999999 8885 699
Q ss_pred EEEEeccCCCCC
Q 037458 166 FRLNWATFSTGD 177 (196)
Q Consensus 166 i~v~~a~~~~~~ 177 (196)
|+|+|++.....
T Consensus 75 l~v~~a~~~~~~ 86 (93)
T 2cqh_A 75 MEVDYSVSKKLR 86 (93)
T ss_dssp CEEEECCCCCCC
T ss_pred EEEEEccCcccc
Confidence 999999875443
No 156
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=2e-18 Score=122.87 Aligned_cols=78 Identities=13% Similarity=0.151 Sum_probs=68.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccE-EEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q 037458 92 NKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGY-GFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNW 170 (196)
Q Consensus 92 ~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~-afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~ 170 (196)
...|||+||++.+++++|+++|+.||.|++|.|... .|| |||+|.+.++|.+|++.|||..|.+..+.|+|+|
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 345789999999999999999999999999998652 276 9999999999999999999999975457999999
Q ss_pred ccCCC
Q 037458 171 ATFST 175 (196)
Q Consensus 171 a~~~~ 175 (196)
|+...
T Consensus 99 Ak~~~ 103 (124)
T 2e5i_A 99 ARPTR 103 (124)
T ss_dssp CSCSC
T ss_pred ecCCc
Confidence 98654
No 157
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.78 E-value=7.2e-20 Score=133.51 Aligned_cols=86 Identities=22% Similarity=0.330 Sum_probs=73.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEE--E---eecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCC
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIK--V---IRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNT 162 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~--i---~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~ 162 (196)
.....++|||+||++++|+++|+++|+.||.|.+|. + ++...+|+++|||||+|.+.++|.+|++.|||..|.
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~-- 118 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLF-- 118 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEET--
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC--
Confidence 345678999999999999999999999999987741 1 111246899999999999999999999999999995
Q ss_pred CccEEEEeccCCC
Q 037458 163 DQPFRLNWATFST 175 (196)
Q Consensus 163 ~~~i~v~~a~~~~ 175 (196)
|+.|+|.||+...
T Consensus 119 g~~l~V~~a~~~~ 131 (143)
T 3egn_A 119 GKPMVVQFARSAR 131 (143)
T ss_dssp TEECEEEECCCSC
T ss_pred CcEEEEEECCCCC
Confidence 6999999998654
No 158
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.78 E-value=1.8e-18 Score=133.30 Aligned_cols=86 Identities=23% Similarity=0.389 Sum_probs=80.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEE
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLN 169 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~ 169 (196)
...++|||+||+.++++++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|.+|++.|||..|. |+.|+|+
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~--g~~i~V~ 200 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLG--GQYLRVG 200 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCS--SSBCEEE
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeC--CcEEEEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999995 6999999
Q ss_pred eccCCCCC
Q 037458 170 WATFSTGD 177 (196)
Q Consensus 170 ~a~~~~~~ 177 (196)
|++.....
T Consensus 201 ~a~~~~~~ 208 (216)
T 2qfj_A 201 KAVTPPMP 208 (216)
T ss_dssp ECSSCSST
T ss_pred EecCCCCC
Confidence 99876443
No 159
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.78 E-value=1e-19 Score=132.29 Aligned_cols=83 Identities=18% Similarity=0.151 Sum_probs=73.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
.....++|||+||++++|+++|+++|+.|| |++|+|++|+. ++++|||||+|.+.++|++|| .+|+..|. ++.|+
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~--gR~i~ 116 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQ--HRYIE 116 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSS--SCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEEC--CEEEE
Confidence 345678999999999999999999999999 77999999986 999999999999999999999 78999995 68999
Q ss_pred EEeccCCC
Q 037458 168 LNWATFST 175 (196)
Q Consensus 168 v~~a~~~~ 175 (196)
|.+++...
T Consensus 117 V~~a~~~~ 124 (139)
T 2hgn_A 117 LFLNSTTG 124 (139)
T ss_dssp CEECCCSC
T ss_pred EEECCCCC
Confidence 99887643
No 160
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.78 E-value=3.3e-19 Score=127.39 Aligned_cols=81 Identities=17% Similarity=0.196 Sum_probs=72.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCee--EEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCcc
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIA--SIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQP 165 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~--~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~ 165 (196)
.....++|||+||++++|+++|+++|+.| .|+ +|+|++|+. |+++|||||+|.+.++|++||+ +++..|. ++.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~--gR~ 112 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIG--HRY 112 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBT--TBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEEC--CEE
Confidence 34567899999999999999999999999 677 999999987 9999999999999999999998 4778885 689
Q ss_pred EEEEeccC
Q 037458 166 FRLNWATF 173 (196)
Q Consensus 166 i~v~~a~~ 173 (196)
|+|.++..
T Consensus 113 I~V~~a~~ 120 (126)
T 2hgm_A 113 IEVFKSSQ 120 (126)
T ss_dssp CCCEEECH
T ss_pred EEEEECCH
Confidence 99988753
No 161
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1e-18 Score=118.70 Aligned_cols=79 Identities=11% Similarity=0.183 Sum_probs=71.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEE-EEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEE
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIASI-KVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRL 168 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v-~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v 168 (196)
...++|||+||++++++++|+++|+.||.|.+| .++.++.++ .|||+|.+.++|.+|++.|||..|. |+.|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~--g~~l~V 86 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLE--NFTLKV 86 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCS--SCBCEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEEC--CcEEEE
Confidence 457899999999999999999999999999999 488887553 3999999999999999999999995 699999
Q ss_pred EeccCC
Q 037458 169 NWATFS 174 (196)
Q Consensus 169 ~~a~~~ 174 (196)
+|++..
T Consensus 87 ~~a~~~ 92 (96)
T 2e44_A 87 AYIPDE 92 (96)
T ss_dssp EECCCC
T ss_pred EEcCcc
Confidence 999865
No 162
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.78 E-value=2.7e-19 Score=126.80 Aligned_cols=80 Identities=13% Similarity=0.153 Sum_probs=71.1
Q ss_pred CEEEEcCC----CCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcC----H-HH---HHHHHH--HhCCCC
Q 037458 93 KTIWVGDL----HHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFT----H-AT---AEKVLQ--SYTSIL 158 (196)
Q Consensus 93 ~~lfVgnL----p~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~----~-~~---A~~al~--~l~g~~ 158 (196)
.+|||+|| ++.+++++|+++|+.||+|.+|.++.|+.||.++|||||+|.+ . ++ |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999995 3 22 788888 689999
Q ss_pred CCCCCccEEEEeccCC
Q 037458 159 MPNTDQPFRLNWATFS 174 (196)
Q Consensus 159 ~~~~~~~i~v~~a~~~ 174 (196)
|+ |+.|+|++.+.+
T Consensus 83 I~--Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IM--GFKFEVILNKHS 96 (136)
T ss_dssp ET--TEEEEEEECCTT
T ss_pred ec--CcEEEEEECccc
Confidence 95 699999987643
No 163
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.78 E-value=2.7e-18 Score=127.27 Aligned_cols=83 Identities=20% Similarity=0.436 Sum_probs=78.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEE
Q 037458 89 GGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRL 168 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v 168 (196)
....++|||+||+.++++++|+++|+.||.|.++.+.+++.++.++|||||+|.+.++|.+|++.|||..+.+.++.|+|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 35678999999999999999999999999999999999998999999999999999999999999999999766799999
Q ss_pred Eec
Q 037458 169 NWA 171 (196)
Q Consensus 169 ~~a 171 (196)
+||
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 164
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.78 E-value=6.8e-19 Score=142.12 Aligned_cols=103 Identities=10% Similarity=0.194 Sum_probs=82.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcC-CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEE
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFASTG-EIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLN 169 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~~~G-~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~ 169 (196)
..++|||+||+.++++++|+++|+.|| .|.+|.+++++. |.++|||||+|.+.++|.+|++.|+|..+. |+.|+|.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~ 192 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIE--GYTLVTK 192 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEET--TEECEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeC--CcEEEEE
Confidence 578999999999999999999999999 999999999875 889999999999999999999999999995 6999999
Q ss_pred eccCCCCCCCC--CCCCCceEEecCCCCC
Q 037458 170 WATFSTGDKRS--DNGPDLSIFVGDLAAD 196 (196)
Q Consensus 170 ~a~~~~~~~~~--~~~~~~~ifV~nL~~d 196 (196)
|+.......+. ......+|||+||+++
T Consensus 193 ~a~~~~~~~~~~~~~~~~~~l~v~nlp~~ 221 (292)
T 2ghp_A 193 VSNPLEKSKRTDSATLEGREIMIRNLSTE 221 (292)
T ss_dssp ECCCC---------CCTTTEEEEEEECTT
T ss_pred ECCCCcccccccccCCCCceEEEECCCcc
Confidence 99865443332 3456789999999974
No 165
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.78 E-value=5.5e-19 Score=118.87 Aligned_cols=78 Identities=17% Similarity=0.212 Sum_probs=65.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
......+|||+||++++|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|+ .+++..+.+.++.|+
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~----~~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQ----SLCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHH----HHTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHH----HHcCCCcccCCEEEE
Confidence 3456789999999999999999999999999999999875 6799999999999988 367777665689999
Q ss_pred EEeccCC
Q 037458 168 LNWATFS 174 (196)
Q Consensus 168 v~~a~~~ 174 (196)
|.+|...
T Consensus 78 v~~a~~k 84 (89)
T 3d2w_A 78 ISNAEPK 84 (89)
T ss_dssp EEECC--
T ss_pred EEEcCCC
Confidence 9998854
No 166
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.77 E-value=1.3e-18 Score=138.81 Aligned_cols=90 Identities=21% Similarity=0.392 Sum_probs=80.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
.....++|||+||+.++|+++|+++|+.||.|.+|.+.++ +|||||+|.+.++|.+|+..|+|..|. ++.|+
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~--g~~l~ 89 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILK--SRPLR 89 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEET--TEECE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEEC--CceeE
Confidence 3456789999999999999999999999999999999655 489999999999999999999999995 69999
Q ss_pred EEeccCCCCCCCCCCCCCceEEecCCCCC
Q 037458 168 LNWATFSTGDKRSDNGPDLSIFVGDLAAD 196 (196)
Q Consensus 168 v~~a~~~~~~~~~~~~~~~~ifV~nL~~d 196 (196)
|.|+.. ..+|||+||+++
T Consensus 90 v~~a~~-----------~~~l~v~nl~~~ 107 (261)
T 3sde_A 90 IRFATH-----------GAALTVKNLSPV 107 (261)
T ss_dssp EEECCC-----------SSEEEEESCCTT
T ss_pred eeeccc-----------CCcccccCCCCC
Confidence 999863 358999999974
No 167
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.1e-18 Score=116.11 Aligned_cols=80 Identities=15% Similarity=0.199 Sum_probs=70.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
.....++|||+|| ++++++|+++|+.||.|.+|.|. .++|||||+|.+.++|++||+.|||..|. ++.|+
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~--g~~l~ 80 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVE--SVQLK 80 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEET--TEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeEC--CeEEE
Confidence 3456789999996 89999999999999999999984 45689999999999999999999999995 79999
Q ss_pred EEeccCCCCC
Q 037458 168 LNWATFSTGD 177 (196)
Q Consensus 168 v~~a~~~~~~ 177 (196)
|+|++.....
T Consensus 81 v~~a~~~~~~ 90 (97)
T 1x5p_A 81 VNIARKQPML 90 (97)
T ss_dssp EECCSSCCCC
T ss_pred EEECCCCCCC
Confidence 9999876443
No 168
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.77 E-value=3.5e-18 Score=126.30 Aligned_cols=82 Identities=22% Similarity=0.433 Sum_probs=76.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEE
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLN 169 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~ 169 (196)
...++|||+||+.++++++|+++|+.||.|.+++++.++.+|.++|||||+|.+.++|.+|++.|||..+.++...|+|+
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 45688999999999999999999999999999999999989999999999999999999999999999997655679999
Q ss_pred ec
Q 037458 170 WA 171 (196)
Q Consensus 170 ~a 171 (196)
||
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 169
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=4.1e-19 Score=126.51 Aligned_cols=80 Identities=18% Similarity=0.176 Sum_probs=71.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCe----eEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCcc
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEI----ASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQP 165 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i----~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~ 165 (196)
...++|||+||++++|+++|+++|+.||.| .+|.|++|+ +|+++|||||+|.+.++|++||+. |+..|. ++.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~--gR~ 96 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLG--KRY 96 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESS--SCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeC--CeE
Confidence 567899999999999999999999999975 689999994 899999999999999999999985 998885 688
Q ss_pred EEEEeccC
Q 037458 166 FRLNWATF 173 (196)
Q Consensus 166 i~v~~a~~ 173 (196)
|+|..++.
T Consensus 97 i~V~~a~~ 104 (123)
T 2dha_A 97 IELFRSTA 104 (123)
T ss_dssp ECCEEECH
T ss_pred EEEEECCH
Confidence 99888753
No 170
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.77 E-value=2.4e-18 Score=128.17 Aligned_cols=81 Identities=17% Similarity=0.500 Sum_probs=76.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEE
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLN 169 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~ 169 (196)
...++|||+||+.++++++|+++|+.||.|.+|.+.+++.+|.++|||||+|.+.++|.+|++.|||..+. |+.|+|+
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~V~ 169 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG--DKKLLVQ 169 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEET--TEECEEE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEEC--CeEEEEE
Confidence 34789999999999999999999999999999999999989999999999999999999999999999995 6999999
Q ss_pred ecc
Q 037458 170 WAT 172 (196)
Q Consensus 170 ~a~ 172 (196)
||.
T Consensus 170 ~As 172 (172)
T 2g4b_A 170 RAS 172 (172)
T ss_dssp ECC
T ss_pred eCC
Confidence 974
No 171
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.5e-18 Score=121.59 Aligned_cols=82 Identities=15% Similarity=0.212 Sum_probs=70.9
Q ss_pred CCCCCCEEEE--cCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCC---CCC
Q 037458 88 GGGENKTIWV--GDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILM---PNT 162 (196)
Q Consensus 88 ~~~~~~~lfV--gnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~---~~~ 162 (196)
.....++||| |||++++++++|+++|++||.|.+|.+..+ +|||||+|.+.++|++|++.|||..+ .+.
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 3456789999 889999999999999999999999988643 58999999999999999999999876 234
Q ss_pred CccEEEEeccCCC
Q 037458 163 DQPFRLNWATFST 175 (196)
Q Consensus 163 ~~~i~v~~a~~~~ 175 (196)
++.|.|+|++.-.
T Consensus 95 g~~l~v~~a~~~p 107 (114)
T 2cq2_A 95 KITLYLNFVEKVQ 107 (114)
T ss_dssp EEECEEEEESCCC
T ss_pred CcEEEEEecccCc
Confidence 7889999987543
No 172
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.77 E-value=1.8e-18 Score=147.43 Aligned_cols=83 Identities=18% Similarity=0.265 Sum_probs=78.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEE
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLN 169 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~ 169 (196)
...++|||+||++++|+++|+++|+.||.|+.|.|+.++.+++++|||||+|.+.++|.+||..|||..|. ++.|+|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~--gr~i~V~ 177 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKID--GRRVLVD 177 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEEC--CEEEEEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999995 6999999
Q ss_pred eccCC
Q 037458 170 WATFS 174 (196)
Q Consensus 170 ~a~~~ 174 (196)
|+...
T Consensus 178 ~a~~~ 182 (437)
T 3pgw_S 178 VERGR 182 (437)
T ss_pred EeCCC
Confidence 99753
No 173
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=8.6e-18 Score=112.84 Aligned_cols=75 Identities=17% Similarity=0.213 Sum_probs=65.5
Q ss_pred CCCCE-EEEcCCCCCCCHHH----HHHHHHhc-CCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCC
Q 037458 90 GENKT-IWVGDLHHWMDENY----LHSCFAST-GEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTD 163 (196)
Q Consensus 90 ~~~~~-lfVgnLp~~~te~~----l~~~F~~~-G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~ 163 (196)
.+..| |||+||++++++++ |+++|+.| |+|.+| |+ |+|||+|.+.++|.+|++.|+|..+. |
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~--g 73 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVF--G 73 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSS--S
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccC--C
Confidence 34555 99999999999987 55899999 599998 33 99999999999999999999999995 7
Q ss_pred ccEEEEeccCCCC
Q 037458 164 QPFRLNWATFSTG 176 (196)
Q Consensus 164 ~~i~v~~a~~~~~ 176 (196)
|.|+|.||+..+.
T Consensus 74 r~i~v~~A~~~sd 86 (96)
T 2diu_A 74 NRIIVSFTPKNRE 86 (96)
T ss_dssp SCCEEESSCCSCC
T ss_pred ceEEEEecCCCcc
Confidence 9999999986543
No 174
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.76 E-value=3.9e-18 Score=129.72 Aligned_cols=84 Identities=17% Similarity=0.488 Sum_probs=79.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEE
Q 037458 89 GGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRL 168 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v 168 (196)
....++|||+||+.++++++|+++|+.||.|.+|.+.+++.+|.++|||||+|.+.++|.+|++.|||..|. |+.|+|
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v 188 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG--DKKLLV 188 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEET--TEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC--CEEEEE
Confidence 357799999999999999999999999999999999999989999999999999999999999999999995 699999
Q ss_pred EeccCC
Q 037458 169 NWATFS 174 (196)
Q Consensus 169 ~~a~~~ 174 (196)
+|++..
T Consensus 189 ~~a~~~ 194 (198)
T 2yh0_A 189 QRASVG 194 (198)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 999865
No 175
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.76 E-value=1.1e-18 Score=116.85 Aligned_cols=76 Identities=12% Similarity=0.142 Sum_probs=69.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEE
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLN 169 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~ 169 (196)
...++|||+||++++++++|+++|+.| .|.+|++. +++|||||+|.+.++|++|++.|||..+. |+.|+|+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~--g~~l~V~ 73 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFR--GKDLIVQ 73 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEET--TEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeEC--CcEEEEE
Confidence 457899999999999999999999999 99999884 56799999999999999999999999995 6999999
Q ss_pred eccCC
Q 037458 170 WATFS 174 (196)
Q Consensus 170 ~a~~~ 174 (196)
|+..+
T Consensus 74 ~a~~~ 78 (88)
T 1wg1_A 74 LQPTD 78 (88)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 98754
No 176
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.76 E-value=2.8e-18 Score=120.71 Aligned_cols=76 Identities=16% Similarity=0.208 Sum_probs=65.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCcc----
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQP---- 165 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~---- 165 (196)
...++|||+||++++++++|+++|+.||.|.+|.|+.+ |||||+|.+.++|++||+.|||..|. ++.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~--gr~~~~~ 84 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFR--SHEGETA 84 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCC--CTTSCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEEC--CcEeeeE
Confidence 45789999999999999999999999999999999876 89999999999999999999999996 455
Q ss_pred -EEEEeccCC
Q 037458 166 -FRLNWATFS 174 (196)
Q Consensus 166 -i~v~~a~~~ 174 (196)
|+|..+...
T Consensus 85 ~i~v~~~~~~ 94 (115)
T 3beg_B 85 YIRVKVDGPR 94 (115)
T ss_dssp BCEEEECC--
T ss_pred EEEeccCCCC
Confidence 788777654
No 177
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.76 E-value=4.2e-19 Score=137.55 Aligned_cols=80 Identities=28% Similarity=0.446 Sum_probs=74.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNW 170 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~ 170 (196)
..++|||+||++++|+++|+++|+.||.|.+|+|++|+ +.++|||||+|.+.++|++||+.|||..|. |+.|+|+|
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~--g~~i~V~~ 177 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLN--DRKVFVGR 177 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEEE
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEEC--CEEEEEEE
Confidence 45789999999999999999999999999999999986 457999999999999999999999999995 69999999
Q ss_pred ccCC
Q 037458 171 ATFS 174 (196)
Q Consensus 171 a~~~ 174 (196)
|+..
T Consensus 178 a~~~ 181 (213)
T 4f02_A 178 FKSR 181 (213)
T ss_dssp CCCH
T ss_pred cCCC
Confidence 9753
No 178
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.76 E-value=3.7e-18 Score=127.12 Aligned_cols=92 Identities=14% Similarity=0.388 Sum_probs=78.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhc----C-------CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCC
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFAST----G-------EIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILM 159 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~~~----G-------~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~ 159 (196)
+.++|||+|||.++|+++|+++|+.| | .|.++.+.++ +|||||+|.+.++|.+|+ .|+|..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~------~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT------TTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC------CCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 56899999999999999999999999 6 6777776543 599999999999999999 8999999
Q ss_pred CCCCccEEEEeccCCCCCCCCCCCCCceEEecCCCCC
Q 037458 160 PNTDQPFRLNWATFSTGDKRSDNGPDLSIFVGDLAAD 196 (196)
Q Consensus 160 ~~~~~~i~v~~a~~~~~~~~~~~~~~~~ifV~nL~~d 196 (196)
. |+.|+|.+++.... .....+|||+||+.+
T Consensus 76 ~--g~~i~v~~~~~~~~-----~~~~~~l~v~nlp~~ 105 (172)
T 2g4b_A 76 Q--GQSLKIRRPHDYQP-----LPGAHKLFIGGLPNY 105 (172)
T ss_dssp T--TEECEEECCSSCCC-----CTTTTCEEEECCCTT
T ss_pred c--CceeeecCCcccCC-----CCCCCEEEEEcCCCc
Confidence 5 69999999775422 234679999999974
No 179
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.75 E-value=4.7e-18 Score=129.27 Aligned_cols=98 Identities=13% Similarity=0.340 Sum_probs=78.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhc----C-------CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCC
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFAST----G-------EIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSIL 158 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~----G-------~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~ 158 (196)
...++|||+||+.++++++|+++|+.| | .|.++.+ ++++|||||+|.+.++|++|+ .|||..
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 357899999999999999999999999 4 5666655 445699999999999999999 799999
Q ss_pred CCCCCccEEEEeccCCCCCCC---------------CCCCCCceEEecCCCCC
Q 037458 159 MPNTDQPFRLNWATFSTGDKR---------------SDNGPDLSIFVGDLAAD 196 (196)
Q Consensus 159 ~~~~~~~i~v~~a~~~~~~~~---------------~~~~~~~~ifV~nL~~d 196 (196)
|. |+.|+|.|++....... .......+|||+||+++
T Consensus 75 ~~--g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~ 125 (198)
T 2yh0_A 75 FQ--GQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNY 125 (198)
T ss_dssp ET--TEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTT
T ss_pred Ec--CceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCC
Confidence 95 69999999875422111 11246689999999974
No 180
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=3.5e-18 Score=120.00 Aligned_cols=65 Identities=17% Similarity=0.394 Sum_probs=60.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCC---CCcccEEEEEEcCHHHHHHHHHHh
Q 037458 89 GGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQT---GLSEGYGFVEFFTHATAEKVLQSY 154 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~t---g~~~g~afV~F~~~~~A~~al~~l 154 (196)
....++|||+||++++++++|+++|+.||.|. +.++.++.+ |+++|||||+|.+.++|++||+.|
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 45678999999999999999999999999999 888888877 799999999999999999999988
No 181
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.75 E-value=3.7e-18 Score=137.79 Aligned_cols=92 Identities=15% Similarity=0.221 Sum_probs=79.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
.....++|||+|||.++|+++|+++|+.||.|.+|++++++.+ ++|||||+|.+.++|.+|++ ++|..+. ++.|+
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~~~--g~~i~ 111 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKVVG--QNEII 111 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCEET--TEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcEeC--CcEEE
Confidence 4567899999999999999999999999999999999998743 57999999999999999995 8999995 69999
Q ss_pred EEeccCCCCCCCCCCCCCceEEecCCCCC
Q 037458 168 LNWATFSTGDKRSDNGPDLSIFVGDLAAD 196 (196)
Q Consensus 168 v~~a~~~~~~~~~~~~~~~~ifV~nL~~d 196 (196)
|.++. ..+|||+|||++
T Consensus 112 v~~~~------------~~~l~v~nlp~~ 128 (292)
T 2ghp_A 112 VSHLT------------ECTLWMTNFPPS 128 (292)
T ss_dssp EEECC------------SCEEEEECCCTT
T ss_pred EEECC------------CCEEEEECCCCC
Confidence 99863 459999999974
No 182
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.75 E-value=9.7e-18 Score=124.91 Aligned_cols=83 Identities=25% Similarity=0.471 Sum_probs=75.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCC-CCccEE
Q 037458 89 GGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPN-TDQPFR 167 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~-~~~~i~ 167 (196)
....++|||+||+.++|+++|+++|+.||.|.+|++++++ +|.++|||||+|.+.++|.+|++.|||..+.. +++.|+
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 170 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMV 170 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCE
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeE
Confidence 3467899999999999999999999999999999999996 59999999999999999999999999987753 369999
Q ss_pred EEecc
Q 037458 168 LNWAT 172 (196)
Q Consensus 168 v~~a~ 172 (196)
|.||.
T Consensus 171 V~~ad 175 (175)
T 3nmr_A 171 VKFAD 175 (175)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99974
No 183
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.75 E-value=2.5e-18 Score=127.39 Aligned_cols=81 Identities=23% Similarity=0.384 Sum_probs=75.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNW 170 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~ 170 (196)
..++|||+||+.++++++|+++|+.||.|.+|.+++++.+|.++|||||+|.+.++|.+|++ ++|..+. |+.|+|.|
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~--g~~i~V~~ 162 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFK--DRKIEIKR 162 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSS--SSCEEEEE
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeC--CeEEEEee
Confidence 45789999999999999999999999999999999999899999999999999999999997 8999885 69999999
Q ss_pred ccCC
Q 037458 171 ATFS 174 (196)
Q Consensus 171 a~~~ 174 (196)
|+..
T Consensus 163 a~pk 166 (167)
T 2cjk_A 163 AEPR 166 (167)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9753
No 184
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.75 E-value=5.4e-18 Score=128.74 Aligned_cols=86 Identities=21% Similarity=0.342 Sum_probs=74.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEE
Q 037458 89 GGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRL 168 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v 168 (196)
....++|||+||+.++++++|+++|+.||.|.+|.+++++.+|.++|||||+|.+.++|.+|+.. ++..|+ |+.|+|
T Consensus 101 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~--G~~i~v 177 (196)
T 1l3k_A 101 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVN--GHNCEV 177 (196)
T ss_dssp --CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEET--TEECEE
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEEC--CEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999975 888885 699999
Q ss_pred EeccCCCCC
Q 037458 169 NWATFSTGD 177 (196)
Q Consensus 169 ~~a~~~~~~ 177 (196)
.|+......
T Consensus 178 ~~a~~k~~~ 186 (196)
T 1l3k_A 178 RKALSKQEM 186 (196)
T ss_dssp EECC-----
T ss_pred EecCChhHh
Confidence 999865433
No 185
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.74 E-value=7.6e-18 Score=135.42 Aligned_cols=87 Identities=14% Similarity=0.245 Sum_probs=77.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEE
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLN 169 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~ 169 (196)
...++|||+|||.++|+++|+++|+.|| |.+|.+ ++++|||||+|.+.++|.+|++.|+|..+. ++.|+|.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~--g~~i~v~ 90 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLR--ERELSVQ 90 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEET--TEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeC--CeEEEEE
Confidence 3568999999999999999999999999 999988 456799999999999999999999999995 6999999
Q ss_pred eccCCCCCCCCCCCCCceEEecCCCCC
Q 037458 170 WATFSTGDKRSDNGPDLSIFVGDLAAD 196 (196)
Q Consensus 170 ~a~~~~~~~~~~~~~~~~ifV~nL~~d 196 (196)
|+. ...+|||+|||++
T Consensus 91 ~~~-----------~~~~l~v~nlp~~ 106 (284)
T 3smz_A 91 LQP-----------TDALLCVANLPPS 106 (284)
T ss_dssp ECC-----------CSCEEEEESCCTT
T ss_pred ecC-----------CCCEEEEcCCCCc
Confidence 965 2358999999974
No 186
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.2e-18 Score=113.99 Aligned_cols=79 Identities=15% Similarity=0.219 Sum_probs=67.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEE
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLN 169 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~ 169 (196)
...++|||+||++++++++|+++|+.||.|.+|+++++ ++|||||+|.+.++|++ +++..+...++.|+|.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~----~~~~~~~~~g~~l~v~ 73 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQS----LCGEDLIIKGISVHIS 73 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHH----TTTCEEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHH----HhcCCceeCCEEEEEE
Confidence 46799999999999999999999999999999999865 57999999999999975 4555554457999999
Q ss_pred eccCCCCC
Q 037458 170 WATFSTGD 177 (196)
Q Consensus 170 ~a~~~~~~ 177 (196)
|++.....
T Consensus 74 ~a~~~~~~ 81 (88)
T 1wf0_A 74 NAEPKHNS 81 (88)
T ss_dssp CCCCCCCC
T ss_pred ecCCCCCC
Confidence 99865443
No 187
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.74 E-value=1.3e-17 Score=118.49 Aligned_cols=78 Identities=15% Similarity=0.236 Sum_probs=69.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
.....++|||+|| ++++++|+++|+.||.|.+|.+. .++|||||+|.+.++|++|++.|||..|. ++.|+
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~--g~~l~ 104 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVE--SVQLK 104 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCS--SCBCE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEEC--CeEEE
Confidence 3456889999996 69999999999999999999985 45699999999999999999999999995 79999
Q ss_pred EEeccCCC
Q 037458 168 LNWATFST 175 (196)
Q Consensus 168 v~~a~~~~ 175 (196)
|+|++...
T Consensus 105 V~~a~~~~ 112 (121)
T 2bz2_A 105 VNIARKQP 112 (121)
T ss_dssp EEECCSSC
T ss_pred EEEeCCCC
Confidence 99998654
No 188
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.73 E-value=1e-17 Score=111.61 Aligned_cols=73 Identities=15% Similarity=0.478 Sum_probs=66.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhc----C-------CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCC
Q 037458 89 GGENKTIWVGDLHHWMDENYLHSCFAST----G-------EIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSI 157 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~~te~~l~~~F~~~----G-------~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~ 157 (196)
....++|||+||+.++++++|+++|+.| | .|.++++.++ +|||||+|.+.++|++|+ .|||.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 3567899999999999999999999999 8 8999998765 489999999999999999 99999
Q ss_pred CCCCCCccEEEEe
Q 037458 158 LMPNTDQPFRLNW 170 (196)
Q Consensus 158 ~~~~~~~~i~v~~ 170 (196)
.+. |+.|+|+.
T Consensus 76 ~~~--g~~l~V~r 86 (87)
T 2hzc_A 76 IFQ--GQSLKIRR 86 (87)
T ss_dssp EET--TEECEEEC
T ss_pred EEC--CeEEEEeC
Confidence 995 68898874
No 189
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.72 E-value=1.2e-16 Score=128.24 Aligned_cols=81 Identities=15% Similarity=0.271 Sum_probs=73.2
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccE
Q 037458 87 SGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPF 166 (196)
Q Consensus 87 ~~~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i 166 (196)
......++|||+||+.++++++|+++|+.||.|++|+++.++ +|||||+|.+.++|.+|++.|||..|. .|+.|
T Consensus 202 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~-~g~~l 275 (282)
T 3pgw_A 202 SENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKIT-QNNAM 275 (282)
T ss_pred cCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeC-CCCEE
Confidence 344568899999999999999999999999999999999765 489999999999999999999999996 27999
Q ss_pred EEEeccC
Q 037458 167 RLNWATF 173 (196)
Q Consensus 167 ~v~~a~~ 173 (196)
+|+|++.
T Consensus 276 ~v~~akk 282 (282)
T 3pgw_A 276 KISFAKK 282 (282)
T ss_pred EEEEecC
Confidence 9999873
No 190
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.72 E-value=4.6e-17 Score=112.73 Aligned_cols=82 Identities=10% Similarity=0.019 Sum_probs=72.4
Q ss_pred CCCCEEEEcCCCC-----CCCHHHHHHHHHhcCCeeEEEEeecCCC-CCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCC
Q 037458 90 GENKTIWVGDLHH-----WMDENYLHSCFASTGEIASIKVIRNKQT-GLSEGYGFVEFFTHATAEKVLQSYTSILMPNTD 163 (196)
Q Consensus 90 ~~~~~lfVgnLp~-----~~te~~l~~~F~~~G~i~~v~i~~d~~t-g~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~ 163 (196)
...++|+|.||-. +-++++|+++|++||.|.+|.|++++.+ ++++|||||+|.+.++|.+|++.|||..+. |
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~--G 83 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFG--G 83 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEET--T
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEEC--C
Confidence 4678999999963 2378999999999999999999998754 688999999999999999999999999995 6
Q ss_pred ccEEEEeccC
Q 037458 164 QPFRLNWATF 173 (196)
Q Consensus 164 ~~i~v~~a~~ 173 (196)
|.|+|+|+..
T Consensus 84 r~i~v~~a~~ 93 (105)
T 2pe8_A 84 RVVKACFYNL 93 (105)
T ss_dssp EECEEEECCH
T ss_pred cEEEEEEcCH
Confidence 9999999864
No 191
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.71 E-value=3.1e-17 Score=129.04 Aligned_cols=82 Identities=23% Similarity=0.381 Sum_probs=71.0
Q ss_pred CCCCCCEEEEcCCCCCC---------CHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCC
Q 037458 88 GGGENKTIWVGDLHHWM---------DENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSIL 158 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~---------te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~ 158 (196)
.....++||||||+..+ ++++|+++|+.||.|.+|+|+.+ +|||||+|.+.++|+.|++.|+|..
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 35678999999999998 79999999999999999999865 5899999999999999999999999
Q ss_pred CC----------CCCccEEEEeccCCC
Q 037458 159 MP----------NTDQPFRLNWATFST 175 (196)
Q Consensus 159 ~~----------~~~~~i~v~~a~~~~ 175 (196)
|. +.++.|+|.||+..+
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred EeccccccccccCCCCEEEEEEccCCC
Confidence 92 137899999998654
No 192
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.70 E-value=5.1e-17 Score=124.29 Aligned_cols=81 Identities=12% Similarity=0.176 Sum_probs=72.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEe
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNW 170 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~ 170 (196)
..++|||+||++++++++|+++|+.||.|.+|+++++. ++.++|||||+|.+.++|.+|++.+ +..+. |+.|+|.|
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~--Gr~l~V~~ 183 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYK--ETDLLILF 183 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEET--TEECEEEE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeEC--CEEEEEEE
Confidence 35899999999999999999999999999999999986 5899999999999999999999755 45774 79999999
Q ss_pred ccCCC
Q 037458 171 ATFST 175 (196)
Q Consensus 171 a~~~~ 175 (196)
++...
T Consensus 184 ~~~y~ 188 (193)
T 2voo_A 184 KDDYF 188 (193)
T ss_dssp TTTC-
T ss_pred hHHHH
Confidence 87543
No 193
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.68 E-value=9e-17 Score=120.05 Aligned_cols=79 Identities=24% Similarity=0.325 Sum_probs=71.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEE
Q 037458 89 GGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRL 168 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v 168 (196)
....++|||+||+.++++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|++.|||..|. |+.|+|
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~i~v 168 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID--GRSVSL 168 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEET--TEEEEE
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEEC--CeEEEE
Confidence 3467899999999999999999999999988766 467899999999999999999999999999995 699999
Q ss_pred EeccCC
Q 037458 169 NWATFS 174 (196)
Q Consensus 169 ~~a~~~ 174 (196)
+||+.+
T Consensus 169 ~~a~~k 174 (175)
T 1fje_B 169 YYTGEK 174 (175)
T ss_dssp EECSSC
T ss_pred EecCCC
Confidence 999754
No 194
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.8e-15 Score=105.72 Aligned_cols=82 Identities=15% Similarity=0.169 Sum_probs=69.4
Q ss_pred CCCCCCEEEEcCCCCCCC-----------HHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCC
Q 037458 88 GGGENKTIWVGDLHHWMD-----------ENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTS 156 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~t-----------e~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g 156 (196)
.....++|+|.||-...+ +++|+++|++||.|.+|.| .++ .++|||||+|.+.++|.+|++.|||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 445688999999944332 5799999999999999955 554 3789999999999999999999999
Q ss_pred CCCCCCCccEEEEeccCCC
Q 037458 157 ILMPNTDQPFRLNWATFST 175 (196)
Q Consensus 157 ~~~~~~~~~i~v~~a~~~~ 175 (196)
..+. ++.|+|+|++...
T Consensus 87 ~~~~--gr~l~v~~a~~~~ 103 (112)
T 2dit_A 87 RWFG--GRQITAQAWDGTT 103 (112)
T ss_dssp CEET--TEECEEEECCSCC
T ss_pred CEEC--CcEEEEEEeCCCC
Confidence 9995 6999999997654
No 195
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.64 E-value=4.1e-16 Score=120.30 Aligned_cols=80 Identities=18% Similarity=0.210 Sum_probs=69.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCe--eEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCC--cc
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEI--ASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTD--QP 165 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i--~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~--~~ 165 (196)
...++|||+||++++|+++|+++|+.||.| .+++++.++ +..+|||||+|.+.++|.+||..|||..|.+.+ .+
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 456899999999999999999999999999 899998875 556799999999999999999999999997542 45
Q ss_pred EEEEec
Q 037458 166 FRLNWA 171 (196)
Q Consensus 166 i~v~~a 171 (196)
+.|.|+
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 666654
No 196
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.63 E-value=1e-15 Score=122.03 Aligned_cols=83 Identities=22% Similarity=0.348 Sum_probs=73.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCC-CCC-CCCCccEEE
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTS-ILM-PNTDQPFRL 168 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g-~~~-~~~~~~i~v 168 (196)
..++|||+||+.++|+++|+++|+.||.|.+|.++.| .+|+++|||||+|.+.++|.+|+..||+ ..+ .+.++.|+|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4679999999999999999999999999999999999 5899999999999999999999999954 333 234799999
Q ss_pred EeccCC
Q 037458 169 NWATFS 174 (196)
Q Consensus 169 ~~a~~~ 174 (196)
+++...
T Consensus 174 ~~~~~~ 179 (261)
T 3sde_A 174 EPMEQF 179 (261)
T ss_dssp EECCCE
T ss_pred eecccc
Confidence 998754
No 197
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.62 E-value=1.3e-15 Score=116.02 Aligned_cols=79 Identities=13% Similarity=0.233 Sum_probs=71.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcC-CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEE
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTG-EIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRL 168 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G-~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v 168 (196)
...++|||+||+.++++++|+++|+.|| .|.+|+++.+. +|||||+|.+.++|.+|++.|||..+. .++.|+|
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~-~g~~l~v 191 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLG-ENHHLRV 191 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCS-SCCSCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccC-CCCeEEE
Confidence 4579999999999999999999999999 99999997642 589999999999999999999999995 2799999
Q ss_pred EeccCC
Q 037458 169 NWATFS 174 (196)
Q Consensus 169 ~~a~~~ 174 (196)
+|++..
T Consensus 192 ~~a~~~ 197 (198)
T 1qm9_A 192 SFSKST 197 (198)
T ss_dssp EEECCC
T ss_pred Eeeccc
Confidence 998753
No 198
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.61 E-value=4e-15 Score=116.31 Aligned_cols=79 Identities=13% Similarity=0.233 Sum_probs=71.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcC-CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEE
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTG-EIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRL 168 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G-~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v 168 (196)
...++|||+||+.++++++|+++|+.|| .|.+|+++.+ .+|||||+|.+.++|.+|++.|||..+. .++.|+|
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~-~g~~l~v 222 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLG-ENHHLRV 222 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSS-SSCBCEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccC-CCCeEEE
Confidence 4579999999999999999999999999 9999999653 2589999999999999999999999995 2799999
Q ss_pred EeccCC
Q 037458 169 NWATFS 174 (196)
Q Consensus 169 ~~a~~~ 174 (196)
+|++..
T Consensus 223 ~~a~~~ 228 (229)
T 2adc_A 223 SFSKST 228 (229)
T ss_dssp EECSSC
T ss_pred EEecCC
Confidence 999853
No 199
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.7e-14 Score=98.83 Aligned_cols=81 Identities=20% Similarity=0.277 Sum_probs=65.2
Q ss_pred CCCCCCEEEEcCCC-------CCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCC
Q 037458 88 GGGENKTIWVGDLH-------HWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMP 160 (196)
Q Consensus 88 ~~~~~~~lfVgnLp-------~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~ 160 (196)
......+|-|.-.. .++++++|+++|++||.|.+|.|+ ++++|||||+|.+.++|++|++.+++ +
T Consensus 6 ~~~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~- 77 (100)
T 2d9o_A 6 SGQGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--L- 77 (100)
T ss_dssp CCCSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--C-
T ss_pred CCCccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--C-
Confidence 34446677776443 458999999999999999999997 36789999999999999999987554 3
Q ss_pred CCCccEEEEeccCCCCC
Q 037458 161 NTDQPFRLNWATFSTGD 177 (196)
Q Consensus 161 ~~~~~i~v~~a~~~~~~ 177 (196)
.++.|+|+|++.....
T Consensus 78 -~g~~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 78 -VDNPLKISWLEGQPQD 93 (100)
T ss_dssp -SSSBCEEECSSCCCCC
T ss_pred -CCCeEEEEEccCCCCC
Confidence 3689999999866433
No 200
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.61 E-value=2.2e-15 Score=104.22 Aligned_cols=82 Identities=15% Similarity=0.122 Sum_probs=70.3
Q ss_pred CCCCEEEEcCC--CCCCC--------HHHHHHHHHhcCCeeEEEEeecCCC--CCcccEEEEEEcCHHHHHHHHHHhCCC
Q 037458 90 GENKTIWVGDL--HHWMD--------ENYLHSCFASTGEIASIKVIRNKQT--GLSEGYGFVEFFTHATAEKVLQSYTSI 157 (196)
Q Consensus 90 ~~~~~lfVgnL--p~~~t--------e~~l~~~F~~~G~i~~v~i~~d~~t--g~~~g~afV~F~~~~~A~~al~~l~g~ 157 (196)
.+.+.|.|.|+ +..+. +++|++.|++||.|.+|.|.+++.+ +.++||+||+|.+.++|.+|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46788999998 33333 3689999999999999999998765 468999999999999999999999999
Q ss_pred CCCCCCccEEEEeccC
Q 037458 158 LMPNTDQPFRLNWATF 173 (196)
Q Consensus 158 ~~~~~~~~i~v~~a~~ 173 (196)
.+. ||.|+|+|+..
T Consensus 83 ~f~--GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFA--NRVVVTKYCDP 96 (105)
T ss_dssp EET--TEECEEEEECH
T ss_pred EeC--CCEEEEEEeCH
Confidence 995 69999999753
No 201
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.60 E-value=4.1e-16 Score=107.77 Aligned_cols=72 Identities=18% Similarity=0.267 Sum_probs=62.7
Q ss_pred EcCCCCCCCHHHHHHHH------------HhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCc
Q 037458 97 VGDLHHWMDENYLHSCF------------ASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQ 164 (196)
Q Consensus 97 VgnLp~~~te~~l~~~F------------~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~ 164 (196)
+.||++.+++++|++.| ++||.|.+|.|++++. ++++|||||+|.+.++|.+|++.|||..+. ||
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~--Gr 96 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFN--GQ 96 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEET--TE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEEC--CE
Confidence 56677777777777666 9999999999998864 789999999999999999999999999995 69
Q ss_pred cEEEEec
Q 037458 165 PFRLNWA 171 (196)
Q Consensus 165 ~i~v~~a 171 (196)
.|+|+|+
T Consensus 97 ~i~v~~s 103 (104)
T 1jmt_A 97 PIHAELS 103 (104)
T ss_dssp ECCEEEC
T ss_pred EEEEEEc
Confidence 9999986
No 202
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.59 E-value=4.2e-15 Score=104.92 Aligned_cols=81 Identities=14% Similarity=0.099 Sum_probs=70.3
Q ss_pred CCCEEEEcCCCC--CC---CHHHHHHHHHhcCCeeEEEEeecCC----CCCcccEEEEEEcCHHHHHHHHHHhCCCCCCC
Q 037458 91 ENKTIWVGDLHH--WM---DENYLHSCFASTGEIASIKVIRNKQ----TGLSEGYGFVEFFTHATAEKVLQSYTSILMPN 161 (196)
Q Consensus 91 ~~~~lfVgnLp~--~~---te~~l~~~F~~~G~i~~v~i~~d~~----tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~ 161 (196)
..++|+|.|+-. ++ .+++|++.|++||.|.+|.|++++. +++++||+||+|.+.++|.+|++.|||..+.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~- 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA- 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET-
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC-
Confidence 578999999832 22 3689999999999999999999865 4578899999999999999999999999995
Q ss_pred CCccEEEEeccC
Q 037458 162 TDQPFRLNWATF 173 (196)
Q Consensus 162 ~~~~i~v~~a~~ 173 (196)
||.|+|+|+..
T Consensus 98 -GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 -GRKVVAEVYDQ 108 (118)
T ss_dssp -TEECEEEEECH
T ss_pred -CcEEEEEEcCh
Confidence 69999999753
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.56 E-value=7.9e-15 Score=120.98 Aligned_cols=79 Identities=14% Similarity=0.231 Sum_probs=67.0
Q ss_pred CCCCCCEEEEcC--CCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCC-CCCc
Q 037458 88 GGGENKTIWVGD--LHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMP-NTDQ 164 (196)
Q Consensus 88 ~~~~~~~lfVgn--Lp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~-~~~~ 164 (196)
.+.+.++||||| |+..+||++|+++|++||+|++|.+.. +||||||+|.+.++|++|++.|||.++. ..|+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 356788999999 578999999999999999999987753 4699999999999999999999999873 2234
Q ss_pred --cEEEEecc
Q 037458 165 --PFRLNWAT 172 (196)
Q Consensus 165 --~i~v~~a~ 172 (196)
.|.|+|+.
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 57888875
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.42 E-value=6.5e-13 Score=93.04 Aligned_cols=77 Identities=10% Similarity=0.129 Sum_probs=64.2
Q ss_pred CCCEEEEcCCCCCC----------CHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCC
Q 037458 91 ENKTIWVGDLHHWM----------DENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMP 160 (196)
Q Consensus 91 ~~~~lfVgnLp~~~----------te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~ 160 (196)
..+.|.|.|+=..- .+++|++.|++||.|.+|.|.++. .+||+||+|.+.++|.+|++.|||..++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 46778888873321 135789999999999999986653 4899999999999999999999999995
Q ss_pred CCCccEEEEeccC
Q 037458 161 NTDQPFRLNWATF 173 (196)
Q Consensus 161 ~~~~~i~v~~a~~ 173 (196)
||.|+|+|+..
T Consensus 82 --GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 --GKMITAAYVPL 92 (114)
T ss_dssp --TEECEEEEECH
T ss_pred --CEEEEEEEEcH
Confidence 69999999864
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=7.7e-12 Score=88.06 Aligned_cols=79 Identities=14% Similarity=0.045 Sum_probs=66.4
Q ss_pred CCCCCCEEEEcCCCCC-CCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcC-HHHHHHHHHHhCCCCCCCCCcc
Q 037458 88 GGGENKTIWVGDLHHW-MDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFT-HATAEKVLQSYTSILMPNTDQP 165 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~-~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~-~~~A~~al~~l~g~~~~~~~~~ 165 (196)
.-..+..|||+||+.+ +++++|+++|+.||.|..|.+.++.. .|||+|.+ .++|..|++.||...+...+..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 4567899999999999 99999999999999999999998864 69999999 8999999999964333324577
Q ss_pred EEEEecc
Q 037458 166 FRLNWAT 172 (196)
Q Consensus 166 i~v~~a~ 172 (196)
++++...
T Consensus 88 ~~~evL~ 94 (121)
T 1owx_A 88 VTWEVLE 94 (121)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 7776544
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=1.4e-11 Score=81.93 Aligned_cols=75 Identities=21% Similarity=0.251 Sum_probs=62.6
Q ss_pred CCCCEEEEcCCCC----CCCH----HHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCC
Q 037458 90 GENKTIWVGDLHH----WMDE----NYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPN 161 (196)
Q Consensus 90 ~~~~~lfVgnLp~----~~te----~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~ 161 (196)
....||+|.-++. ++-+ .+|.+.|+.||.|..++++.|+ +||+|.+.++|.+||+ |||..+.
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~- 74 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELL- 74 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEET-
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeC-
Confidence 4677888887652 2333 5788999999999999999874 8999999999999998 9999994
Q ss_pred CCccEEEEeccCCC
Q 037458 162 TDQPFRLNWATFST 175 (196)
Q Consensus 162 ~~~~i~v~~a~~~~ 175 (196)
||.|+|++++...
T Consensus 75 -Gr~LkV~lkt~dW 87 (91)
T 2dnr_A 75 -NRTITIALKSPSG 87 (91)
T ss_dssp -TEEEEEEECCCSS
T ss_pred -CeEEEEEeCCCCc
Confidence 7999999988654
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.15 E-value=1.3e-10 Score=90.11 Aligned_cols=67 Identities=13% Similarity=0.083 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHhcCCeeEEEEeecC----CCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEecc
Q 037458 104 MDENYLHSCFASTGEIASIKVIRNK----QTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWAT 172 (196)
Q Consensus 104 ~te~~l~~~F~~~G~i~~v~i~~d~----~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~a~ 172 (196)
-.+++|++.|++||.|.++.|+++. .+++++|++||+|.+.++|.+|+..|||..+. ||.|+++|..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~--gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA--GRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSS--SSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceEC--CeEEEEEEcC
Confidence 3567899999999999999998654 34589999999999999999999999999995 6999999975
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=1.1e-10 Score=77.98 Aligned_cols=73 Identities=18% Similarity=0.220 Sum_probs=61.6
Q ss_pred CCCCCEEEEcCCCCC------CCH---HHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCC
Q 037458 89 GGENKTIWVGDLHHW------MDE---NYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILM 159 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~------~te---~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~ 159 (196)
...+.||+|.-++.. ..+ .+|.+.|+.||.|..++++.|+ +||+|.+.++|.+||+ |||..+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 456789999887632 332 4688999999999999999884 9999999999999998 999999
Q ss_pred CCCCccEEEEecc
Q 037458 160 PNTDQPFRLNWAT 172 (196)
Q Consensus 160 ~~~~~~i~v~~a~ 172 (196)
. +|.|+|++-+
T Consensus 83 ~--Gr~L~V~~k~ 93 (95)
T 1ufw_A 83 K--GRAVKISGPS 93 (95)
T ss_dssp T--TEEEEEECCC
T ss_pred C--CeEEEEeccC
Confidence 5 6999999854
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.71 E-value=6.7e-08 Score=65.89 Aligned_cols=73 Identities=12% Similarity=0.087 Sum_probs=66.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhc-----CCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCc
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFAST-----GEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQ 164 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~-----G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~ 164 (196)
+..++|-|-|||..+++..|+.+++.+ |.|+.+.+..|- +-|+|+|.+...|.+|.-.|+|.+|. |+
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~--gr 90 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQ--GK 90 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEET--TE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeec--Ce
Confidence 457899999999999999999999999 999999999886 68999999999999998889999996 69
Q ss_pred cEEEEe
Q 037458 165 PFRLNW 170 (196)
Q Consensus 165 ~i~v~~ 170 (196)
.|++.-
T Consensus 91 ~Lr~gT 96 (117)
T 2l9w_A 91 VIRSGT 96 (117)
T ss_dssp EEEEEC
T ss_pred EEEecC
Confidence 999864
No 210
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.54 E-value=2.5e-07 Score=67.60 Aligned_cols=74 Identities=24% Similarity=0.131 Sum_probs=47.5
Q ss_pred EEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCC-----CccEEEEeccCC-CCCCCCCCCCCceEEecCCC
Q 037458 121 SIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNT-----DQPFRLNWATFS-TGDKRSDNGPDLSIFVGDLA 194 (196)
Q Consensus 121 ~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~-----~~~i~v~~a~~~-~~~~~~~~~~~~~ifV~nL~ 194 (196)
.++|+++. .+++|||||+|.+.++|++|++.+++....+. +........... ............+|||+||+
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 56778875 36899999999999999999988876432211 112222222211 11222334567899999999
Q ss_pred CC
Q 037458 195 AD 196 (196)
Q Consensus 195 ~d 196 (196)
++
T Consensus 80 ~~ 81 (158)
T 2kn4_A 80 YR 81 (158)
T ss_dssp TT
T ss_pred CC
Confidence 75
No 211
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.36 E-value=5.5e-07 Score=65.26 Aligned_cols=63 Identities=25% Similarity=0.260 Sum_probs=50.1
Q ss_pred CCcccEEEEEEcCHHHHHHHHHHh-CCCCCCCCCccEEEEeccCCC-----------CCCCCCCCCCceEEecCCCCC
Q 037458 131 GLSEGYGFVEFFTHATAEKVLQSY-TSILMPNTDQPFRLNWATFST-----------GDKRSDNGPDLSIFVGDLAAD 196 (196)
Q Consensus 131 g~~~g~afV~F~~~~~A~~al~~l-~g~~~~~~~~~i~v~~a~~~~-----------~~~~~~~~~~~~ifV~nL~~d 196 (196)
...+|+++|+|.+.++|++|++.+ ||..++ | .|++++++... ...........+|||+||+++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~--G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~ 84 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVD--G-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNN 84 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCC--C-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSC
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCC--C-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCC
Confidence 567899999999999999999999 999996 5 89999887521 111233456789999999975
No 212
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=1.7e-05 Score=53.49 Aligned_cols=89 Identities=19% Similarity=0.216 Sum_probs=64.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhc-----CCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCC
Q 037458 88 GGGENKTIWVGDLHHWMDENYLHSCFAST-----GEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNT 162 (196)
Q Consensus 88 ~~~~~~~lfVgnLp~~~te~~l~~~F~~~-----G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~ 162 (196)
.+...++|.|.|||..+.++.|+-+|++- |+|.++.... +-|+|+|.+.+.|+++|+. ..+.|.+
T Consensus 4 ~~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~- 73 (104)
T 2dhx_A 4 GSSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHG- 73 (104)
T ss_dssp SCCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSS-
T ss_pred CccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecC-
Confidence 34567899999999999999999999872 5788877643 4789999999999999863 3566653
Q ss_pred CccEEEEeccCCCCCCCCCCCCCceEEecCCCCC
Q 037458 163 DQPFRLNWATFSTGDKRSDNGPDLSIFVGDLAAD 196 (196)
Q Consensus 163 ~~~i~v~~a~~~~~~~~~~~~~~~~ifV~nL~~d 196 (196)
..|.|.-... ....++++.+|+++
T Consensus 74 -~~LsV~P~~~---------~~~~r~ll~gl~~~ 97 (104)
T 2dhx_A 74 -AQLSLRPAPP---------RAPARLLLQGLPPG 97 (104)
T ss_dssp -SBCEEEECCC---------CCCCCCCCCSCCCC
T ss_pred -eEEEEEcCCC---------CCcceEeeecCCCC
Confidence 5555532211 23336778888764
No 213
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.08 E-value=1.8e-05 Score=52.52 Aligned_cols=80 Identities=10% Similarity=0.158 Sum_probs=62.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCC--cccEEEEEEcCHHHHHHHHHHhCCCCCCCC-Cc--cEE
Q 037458 93 KTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGL--SEGYGFVEFFTHATAEKVLQSYTSILMPNT-DQ--PFR 167 (196)
Q Consensus 93 ~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~--~~g~afV~F~~~~~A~~al~~l~g~~~~~~-~~--~i~ 167 (196)
.+|-|++||+++||+++.+.++...++.....+..+.+.+ .-.-|||.|.+.+++....+.++|..+.+. |. ...
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 5799999999999999999999998888777776654432 235699999999999999999999877532 22 234
Q ss_pred EEecc
Q 037458 168 LNWAT 172 (196)
Q Consensus 168 v~~a~ 172 (196)
|++|-
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 66664
No 214
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.94 E-value=4.4e-05 Score=50.90 Aligned_cols=56 Identities=14% Similarity=0.200 Sum_probs=47.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYT 155 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~ 155 (196)
....++| ++|..+...||.++|+.||. ..|+++.| .-|||.|.+.+.|..|+..++
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 3445666 99999999999999999994 56788887 489999999999999998764
No 215
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.86 E-value=3.1e-05 Score=52.42 Aligned_cols=77 Identities=8% Similarity=0.025 Sum_probs=62.8
Q ss_pred CCCCEEEEcCCCCCC-C----HHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCc
Q 037458 90 GENKTIWVGDLHHWM-D----ENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQ 164 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~-t----e~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~ 164 (196)
+-..+|+|.||+.++ . .+.++++|..|+++......+.- .-..|.|.+.++|.+|-..|++..+. |+
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~--g~ 74 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFL--GK 74 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEET--TE
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceec--Cc
Confidence 345689999998765 2 25779999999999887776653 35789999999999999999999995 68
Q ss_pred cEEEEeccCC
Q 037458 165 PFRLNWATFS 174 (196)
Q Consensus 165 ~i~v~~a~~~ 174 (196)
.+||.|+...
T Consensus 75 ~~r~YFgq~~ 84 (104)
T 1wey_A 75 EMKLYFAQTL 84 (104)
T ss_dssp ECEEECCCCS
T ss_pred eeEEEecCCC
Confidence 9999998743
No 216
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.76 E-value=5e-05 Score=50.79 Aligned_cols=53 Identities=15% Similarity=0.165 Sum_probs=46.7
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q 037458 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYT 155 (196)
Q Consensus 94 ~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~ 155 (196)
.++| ++|..+...+|..+|+.|| -..|+++.| .-|||.|.+.+.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 4555 9999999999999999999 567888887 489999999999999998775
No 217
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.45 E-value=0.0006 Score=47.27 Aligned_cols=73 Identities=12% Similarity=0.104 Sum_probs=56.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEE
Q 037458 89 GGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRL 168 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v 168 (196)
....+-|.|-+.+... .+.|.+.|++||.|.+..... ...+-.|.|.++.+|++||. .||..|.+ +..|-|
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~-kNG~ii~g-~~mIGV 91 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALS-KDGRIFGE-SIMIGV 91 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHT-TTTCEETT-TEECEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHH-hCCeEecC-CEEEEE
Confidence 3456778888998885 567788999999999887621 23699999999999999996 59998862 344555
Q ss_pred Ee
Q 037458 169 NW 170 (196)
Q Consensus 169 ~~ 170 (196)
..
T Consensus 92 ~p 93 (119)
T 1wwh_A 92 KP 93 (119)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 218
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.39 E-value=0.00013 Score=48.78 Aligned_cols=81 Identities=6% Similarity=0.094 Sum_probs=55.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCC--cccEEEEEEcCHHHHHHHHHHhCCCCCCCC---CccE
Q 037458 92 NKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGL--SEGYGFVEFFTHATAEKVLQSYTSILMPNT---DQPF 166 (196)
Q Consensus 92 ~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~--~~g~afV~F~~~~~A~~al~~l~g~~~~~~---~~~i 166 (196)
.-+|.|+.||+.+||+++.+.++..-++.....+..+.+-+ .-.-|||.|.+.+++....+.++|..+.+. ....
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 45799999999999999888877655543333332222211 124689999999999999999999876532 2234
Q ss_pred EEEecc
Q 037458 167 RLNWAT 172 (196)
Q Consensus 167 ~v~~a~ 172 (196)
.|++|-
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 566664
No 219
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=97.13 E-value=0.00024 Score=60.49 Aligned_cols=55 Identities=16% Similarity=0.206 Sum_probs=42.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHH
Q 037458 92 NKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQ 152 (196)
Q Consensus 92 ~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~ 152 (196)
.|+|||. ++..+++++|.++|+.||.|.++.+..++. .|+.|+|.+.+++.+++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-----~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-----LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-----EEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-----eEEEEEeCCHHHHHHHHh
Confidence 4899998 799999999999999999999998876642 699999999998886653
No 220
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=95.84 E-value=0.0033 Score=44.38 Aligned_cols=54 Identities=11% Similarity=-0.066 Sum_probs=14.2
Q ss_pred cEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEeccCCCCCCCCCCCCCceEEecCCCCC
Q 037458 135 GYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWATFSTGDKRSDNGPDLSIFVGDLAAD 196 (196)
Q Consensus 135 g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~a~~~~~~~~~~~~~~~~ifV~nL~~d 196 (196)
-+.|++|.+...+..|+..++|....+.+ .+.+... ..+.....+|||+||+++
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~---~~~~~~~-----~~~~~~~~~l~V~nLp~~ 58 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRG---SMSYGRP-----PPDVEGMTSLKVDNLTYR 58 (135)
T ss_dssp ---------------------------------CCSCCS-----CSSGGGCCCEEEECCCSS
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCC---CCCcCCC-----CCCCCCCCEEEEeCCCCC
Confidence 36788888888899999988887664322 2222221 223455679999999974
No 221
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.79 E-value=0.011 Score=41.55 Aligned_cols=77 Identities=17% Similarity=0.104 Sum_probs=51.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeE-EEEeec------------CCCC-CcccEEEEEEcCHHHHHHHHHHhCCC
Q 037458 92 NKTIWVGDLHHWMDENYLHSCFASTGEIAS-IKVIRN------------KQTG-LSEGYGFVEFFTHATAEKVLQSYTSI 157 (196)
Q Consensus 92 ~~~lfVgnLp~~~te~~l~~~F~~~G~i~~-v~i~~d------------~~tg-~~~g~afV~F~~~~~A~~al~~l~g~ 157 (196)
..-|.|-+.|.+.+ ..+.+.|++||.|.+ +.+.++ +... ...++..|+|++..+|.+||. .||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 34566777876654 567788999999866 221110 0001 124688999999999999996 6999
Q ss_pred CCCCCCccEEEEecc
Q 037458 158 LMPNTDQPFRLNWAT 172 (196)
Q Consensus 158 ~~~~~~~~i~v~~a~ 172 (196)
.|.+ ..|-|...+
T Consensus 85 ii~G--~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNG--VLLGVIPYT 97 (132)
T ss_dssp EETT--EECEEEECC
T ss_pred EeCc--EEEEEEECC
Confidence 9964 566665543
No 222
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=95.46 E-value=0.0059 Score=44.43 Aligned_cols=58 Identities=10% Similarity=0.059 Sum_probs=11.6
Q ss_pred EEEcCHHHHHHHHHHhCCCCCCCCCccEEEEeccCCCC---------------CCCCCCCCCceEEecCCCCC
Q 037458 139 VEFFTHATAEKVLQSYTSILMPNTDQPFRLNWATFSTG---------------DKRSDNGPDLSIFVGDLAAD 196 (196)
Q Consensus 139 V~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~a~~~~~---------------~~~~~~~~~~~ifV~nL~~d 196 (196)
.+|++.++|+.++..|++......++.++..++..... .........++|||+||+++
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~ 83 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEE 83 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTT
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCC
Confidence 78999999999999999887765567777766433210 01112345668999999974
No 223
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=94.82 E-value=0.12 Score=44.57 Aligned_cols=56 Identities=14% Similarity=0.180 Sum_probs=46.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCC
Q 037458 92 NKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTS 156 (196)
Q Consensus 92 ~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g 156 (196)
...++|+ ++..+...+|.++|+.||. .+|+++.| ..|||.|.+.+.|..+++.++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 4566666 8888899999999999995 56777766 4899999999999999998864
No 224
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=93.68 E-value=0.0038 Score=52.87 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=12.6
Q ss_pred HHHHHHhcCCeeEEE
Q 037458 109 LHSCFASTGEIASIK 123 (196)
Q Consensus 109 l~~~F~~~G~i~~v~ 123 (196)
|..+|..++.|..|.
T Consensus 9 L~~lF~p~pPl~~~~ 23 (437)
T 3pgw_S 9 LLALFAPRDPIPYLP 23 (437)
T ss_pred HHHhcCCCCCCcCCC
Confidence 788999999988773
No 225
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=89.17 E-value=1.5 Score=27.04 Aligned_cols=68 Identities=13% Similarity=0.230 Sum_probs=41.1
Q ss_pred EEEEcCC-CCCCCHHHHHHHHHhcCC-----eeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEE
Q 037458 94 TIWVGDL-HHWMDENYLHSCFASTGE-----IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFR 167 (196)
Q Consensus 94 ~lfVgnL-p~~~te~~l~~~F~~~G~-----i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~ 167 (196)
+|||..= -..+...+|..++..-+. |-.+++.. .|.||+-.. +.+..+++.|++..+. ++.++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~-~~~~~~~~~l~~~~i~--g~~~~ 70 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILN-GKGPHVLKVMKNTTVK--GKQLK 70 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECT-TCHHHHHHHHTTCCC-----CCC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECH-HHHHHHHHHhccccCc--CceEE
Confidence 5666422 334666677777776553 45555532 488998875 4577888899998884 67888
Q ss_pred EEecc
Q 037458 168 LNWAT 172 (196)
Q Consensus 168 v~~a~ 172 (196)
++.++
T Consensus 71 v~~~~ 75 (76)
T 2g0c_A 71 VNKAN 75 (76)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 87654
No 226
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=86.80 E-value=0.26 Score=34.82 Aligned_cols=56 Identities=7% Similarity=-0.009 Sum_probs=11.2
Q ss_pred cEEEEEEcCHHHHHHHHHHhCCCCCCCCCccEEEEeccCCCCCCCCCCCCCceEEecCCCCC
Q 037458 135 GYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWATFSTGDKRSDNGPDLSIFVGDLAAD 196 (196)
Q Consensus 135 g~afV~F~~~~~A~~al~~l~g~~~~~~~~~i~v~~a~~~~~~~~~~~~~~~~ifV~nL~~d 196 (196)
|+||.+|.-.+.+..++..+... .. +...--... ...........++|||+|||++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~g--g~~~g~~~g---~~~~~~~~~~~~~lfV~nLp~~ 57 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TG--GQQMGRGSG---DSEFTVQSTTGHCVHMRGLPYK 57 (139)
T ss_dssp -------------------------------------------------CCCCEECCSCCTT
T ss_pred CcccccccCccccchhcccchhc-cC--CCCCCCCCC---CcccCCCCCCCCEEEEeCCCCC
Confidence 67888887776666555443322 11 111100111 1111122345679999999985
No 227
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=81.68 E-value=0.94 Score=29.91 Aligned_cols=32 Identities=13% Similarity=0.340 Sum_probs=19.3
Q ss_pred CccEEEEeccCCCCCCCCCCCCCceEEecCCCCC
Q 037458 163 DQPFRLNWATFSTGDKRSDNGPDLSIFVGDLAAD 196 (196)
Q Consensus 163 ~~~i~v~~a~~~~~~~~~~~~~~~~ifV~nL~~d 196 (196)
+..|++..+..... ........+|||+||+++
T Consensus 7 g~~~~~~~s~~~~~--~~~~~~~~~l~V~nl~~~ 38 (110)
T 1wf1_A 7 GMSLKLQASNVTNK--NDPKSINSRVFIGNLNTA 38 (110)
T ss_dssp SCCCCCCCCCSCCS--CCCTTCSSEEEECSCCCS
T ss_pred CcccccccCCCCCC--CCCCCCCcEEEEeCCCcc
Confidence 45666665543221 222345579999999975
No 228
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=80.49 E-value=1.1 Score=31.37 Aligned_cols=15 Identities=13% Similarity=0.213 Sum_probs=12.3
Q ss_pred CCCCceEEecCCCCC
Q 037458 182 NGPDLSIFVGDLAAD 196 (196)
Q Consensus 182 ~~~~~~ifV~nL~~d 196 (196)
....++|||+|||++
T Consensus 41 ~~~~~~lfVgnLp~~ 55 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWS 55 (136)
T ss_dssp CCTTCEEEEESCCTT
T ss_pred CCCCCEEEEeCCCCC
Confidence 456779999999985
No 229
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.77 E-value=1.5 Score=29.92 Aligned_cols=15 Identities=27% Similarity=0.372 Sum_probs=12.2
Q ss_pred CCCCceEEecCCCCC
Q 037458 182 NGPDLSIFVGDLAAD 196 (196)
Q Consensus 182 ~~~~~~ifV~nL~~d 196 (196)
.....+|||+||+++
T Consensus 28 ~~ps~~LfVgNLp~~ 42 (119)
T 2ad9_A 28 GVPSRVIHIRKLPID 42 (119)
T ss_dssp SSCCSEEEEESCCTT
T ss_pred CCCCCEEEEeCCCCC
Confidence 456779999999985
No 230
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=71.74 E-value=6.8 Score=28.57 Aligned_cols=46 Identities=15% Similarity=0.091 Sum_probs=30.5
Q ss_pred CCHHHHHHHH--HhcCCeeEEEEeecCCCCCcccEEEEEEcC-HHHHHHHHH
Q 037458 104 MDENYLHSCF--ASTGEIASIKVIRNKQTGLSEGYGFVEFFT-HATAEKVLQ 152 (196)
Q Consensus 104 ~te~~l~~~F--~~~G~i~~v~i~~d~~tg~~~g~afV~F~~-~~~A~~al~ 152 (196)
.+..+|++.| +.|..++ |+.+.++ ..+.|++.|+|.+ ......|++
T Consensus 33 ~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 33 ESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp CCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 3457899977 8898866 4444443 3477999999974 444444543
No 231
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.95 E-value=2.6 Score=27.73 Aligned_cols=16 Identities=6% Similarity=0.198 Sum_probs=12.7
Q ss_pred CCCCCceEEecCCCCC
Q 037458 181 DNGPDLSIFVGDLAAD 196 (196)
Q Consensus 181 ~~~~~~~ifV~nL~~d 196 (196)
.....++|||+||+.+
T Consensus 25 ~~~~~~~l~V~nLp~~ 40 (109)
T 2err_A 25 NKSQPKRLHVSNIPFR 40 (109)
T ss_dssp CTTCCCEEEEESCCTT
T ss_pred CCCCCCEEEEECCCCc
Confidence 3456779999999974
No 232
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=70.32 E-value=3.7 Score=27.50 Aligned_cols=17 Identities=12% Similarity=0.173 Sum_probs=13.2
Q ss_pred CCCCCCceEEecCCCCC
Q 037458 180 SDNGPDLSIFVGDLAAD 196 (196)
Q Consensus 180 ~~~~~~~~ifV~nL~~d 196 (196)
......++|||+||+++
T Consensus 30 ~~~~~~~~l~V~nlp~~ 46 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFG 46 (124)
T ss_dssp CCCSSCEEEEEESCCSS
T ss_pred CCCCCCCEEEEeCCCCC
Confidence 34566789999999974
No 233
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=69.90 E-value=2.7 Score=28.93 Aligned_cols=15 Identities=13% Similarity=0.022 Sum_probs=12.1
Q ss_pred CCCCceEEecCCCCC
Q 037458 182 NGPDLSIFVGDLAAD 196 (196)
Q Consensus 182 ~~~~~~ifV~nL~~d 196 (196)
.....+|||+|||++
T Consensus 39 ~~~~~~lfVgnLp~~ 53 (126)
T 2hgm_A 39 SANDGFVRLRGLPFG 53 (126)
T ss_dssp SSSCCEEEEECCCTT
T ss_pred CCCCCEEEEeCCCCC
Confidence 455679999999985
No 234
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=69.85 E-value=0.93 Score=30.35 Aligned_cols=19 Identities=5% Similarity=0.062 Sum_probs=0.0
Q ss_pred CCCCEEEEcCCCCCCCHHH
Q 037458 90 GENKTIWVGDLHHWMDENY 108 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~ 108 (196)
...++|||+||++++|++.
T Consensus 95 ~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 95 KEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -------------------
T ss_pred CCCCceEeCCCCCCccccc
Confidence 4456799999999999864
No 235
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=69.10 E-value=3.9 Score=27.06 Aligned_cols=17 Identities=12% Similarity=0.292 Sum_probs=13.2
Q ss_pred CCCCCCceEEecCCCCC
Q 037458 180 SDNGPDLSIFVGDLAAD 196 (196)
Q Consensus 180 ~~~~~~~~ifV~nL~~d 196 (196)
.+....++|||+||+++
T Consensus 35 ~~~~~~~~l~V~nlp~~ 51 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQE 51 (118)
T ss_dssp CCCCCSEEEEEECSCTT
T ss_pred CCCCCCCEEEEeCCCCC
Confidence 33556789999999975
No 236
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=68.30 E-value=3.9 Score=27.80 Aligned_cols=17 Identities=24% Similarity=0.472 Sum_probs=13.3
Q ss_pred CCCCCCceEEecCCCCC
Q 037458 180 SDNGPDLSIFVGDLAAD 196 (196)
Q Consensus 180 ~~~~~~~~ifV~nL~~d 196 (196)
.......+|||+|||++
T Consensus 58 ~~~~~~~~l~v~nlp~~ 74 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEE 74 (140)
T ss_dssp SSCSSCCEEEEECCCTT
T ss_pred CCCCCCcEEEEEeCCCC
Confidence 34567789999999974
No 237
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=61.88 E-value=4 Score=27.86 Aligned_cols=17 Identities=18% Similarity=0.157 Sum_probs=13.2
Q ss_pred CCCCCCceEEecCCCCC
Q 037458 180 SDNGPDLSIFVGDLAAD 196 (196)
Q Consensus 180 ~~~~~~~~ifV~nL~~d 196 (196)
.+.....+|||+||+++
T Consensus 41 ~~~~~~~~l~V~nLp~~ 57 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLY 57 (129)
T ss_dssp SCCCCSSCBCEETCTTS
T ss_pred CCCCCCCEEEEeCCCCC
Confidence 33566789999999975
No 238
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=60.44 E-value=23 Score=20.76 Aligned_cols=55 Identities=11% Similarity=-0.084 Sum_probs=40.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHH
Q 037458 92 NKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQS 153 (196)
Q Consensus 92 ~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~ 153 (196)
..++.|.++.-.-=...|++.+.. ..|..+.+-.. .+-+.|+|.+.+....+|+.
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHH
Confidence 456888888777667888999999 88888877443 25677888756666667764
No 239
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=51.48 E-value=46 Score=21.47 Aligned_cols=60 Identities=12% Similarity=0.019 Sum_probs=47.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCC
Q 037458 89 GGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTS 156 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g 156 (196)
-..++-|-|-|||..+-..++.-.....|.--.|..+. |-|.|.|.+.++-..|+..|-.
T Consensus 9 ikqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 9 IKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp -CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHEE
T ss_pred hhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHHh
Confidence 35678888999999999888877777777666666542 6799999999999999887644
No 240
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=51.08 E-value=49 Score=21.70 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHh-cC---CeeEEE-EeecCCCCCcccEEEEEEcCHHHHHHH
Q 037458 102 HWMDENYLHSCFAS-TG---EIASIK-VIRNKQTGLSEGYGFVEFFTHATAEKV 150 (196)
Q Consensus 102 ~~~te~~l~~~F~~-~G---~i~~v~-i~~d~~tg~~~g~afV~F~~~~~A~~a 150 (196)
.+.+..+|++.+.+ |+ .+..|. +...-..|++.|||.| |+|.+.|.+.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 45678888877765 33 233333 2233334566677755 6666665543
No 241
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=49.72 E-value=35 Score=22.59 Aligned_cols=35 Identities=17% Similarity=0.378 Sum_probs=25.6
Q ss_pred CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCC
Q 037458 118 EIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSI 157 (196)
Q Consensus 118 ~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~ 157 (196)
.|.++... ...+||-|||=.+..++..|++.+.+.
T Consensus 40 ~I~Si~~~-----~~lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVAP-----EHVKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEEC-----TTCCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEec-----CCCceEEEEEeCCHHHHHHHHhcccce
Confidence 46666543 235799999999999999998765443
No 242
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=48.86 E-value=35 Score=19.39 Aligned_cols=55 Identities=9% Similarity=0.047 Sum_probs=37.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEc---CHHHHHHHHHH
Q 037458 93 KTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFF---THATAEKVLQS 153 (196)
Q Consensus 93 ~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~---~~~~A~~al~~ 153 (196)
.++.|.++.-..-...|++.+.....|.++.+-... +-+.|+|. +.++..++++.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFAL------EQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCHHHHHHHHHH
Confidence 357788876655567788999998888888875543 46778874 33445555543
No 243
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=47.45 E-value=33 Score=24.51 Aligned_cols=37 Identities=14% Similarity=0.291 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHhcCCe---eEEEEeecCCCCCcccEEEEE
Q 037458 104 MDENYLHSCFASTGEI---ASIKVIRNKQTGLSEGYGFVE 140 (196)
Q Consensus 104 ~te~~l~~~F~~~G~i---~~v~i~~d~~tg~~~g~afV~ 140 (196)
.|+++|+++-...|.+ .++.+..|..+|+.+.|||-+
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 5889999999999977 456666674478888888764
No 244
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=46.62 E-value=60 Score=21.36 Aligned_cols=47 Identities=6% Similarity=0.020 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHHh-cC---CeeEEE-EeecCCCCCcccEEEEEEcCHHHHHH
Q 037458 102 HWMDENYLHSCFAS-TG---EIASIK-VIRNKQTGLSEGYGFVEFFTHATAEK 149 (196)
Q Consensus 102 ~~~te~~l~~~F~~-~G---~i~~v~-i~~d~~tg~~~g~afV~F~~~~~A~~ 149 (196)
.+.+..+|++.+.+ |+ .+..|. +...-..|++.|||.| |++.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 45778888877765 33 233332 3333334667777765 667766654
No 245
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=46.37 E-value=53 Score=21.80 Aligned_cols=46 Identities=9% Similarity=0.042 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHh-cCC---eeEEE-EeecCCCCCcccEEEEEEcCHHHHHH
Q 037458 103 WMDENYLHSCFAS-TGE---IASIK-VIRNKQTGLSEGYGFVEFFTHATAEK 149 (196)
Q Consensus 103 ~~te~~l~~~F~~-~G~---i~~v~-i~~d~~tg~~~g~afV~F~~~~~A~~ 149 (196)
+.+..+|++.+.. |+. +..|. +...-..|++.|||.| |+|.+.|.+
T Consensus 38 tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 38 TPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 5678888877765 342 22332 2223334567777766 677777664
No 246
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=46.10 E-value=55 Score=20.80 Aligned_cols=34 Identities=24% Similarity=0.315 Sum_probs=23.6
Q ss_pred CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCC
Q 037458 118 EIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTS 156 (196)
Q Consensus 118 ~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g 156 (196)
.|.++.+.. ...||.||++...++...+++...|
T Consensus 39 ~i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 39 DVYSILASE-----SLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp CEEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred cEEEEEEec-----ccCCEEEEEEecchhHHHHHHCCCC
Confidence 355555542 2679999999998887777765444
No 247
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=44.49 E-value=13 Score=24.42 Aligned_cols=45 Identities=16% Similarity=0.216 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHh-cCCeeEEEEeecCC----CCCcccEEEEEEcCHHHHH
Q 037458 103 WMDENYLHSCFAS-TGEIASIKVIRNKQ----TGLSEGYGFVEFFTHATAE 148 (196)
Q Consensus 103 ~~te~~l~~~F~~-~G~i~~v~i~~d~~----tg~~~g~afV~F~~~~~A~ 148 (196)
+.+..+|++.+.+ |+.-.++.++..-. .|++.|||.| |+|.+.|.
T Consensus 30 tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~k 79 (98)
T 2g1d_A 30 TPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAM 79 (98)
T ss_dssp CCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHH
Confidence 5677888777655 33222333333322 2455666655 45544444
No 248
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=42.85 E-value=36 Score=21.76 Aligned_cols=26 Identities=4% Similarity=0.143 Sum_probs=20.8
Q ss_pred CeeEEEEeecCCCCCcccEEEEEEcC
Q 037458 118 EIASIKVIRNKQTGLSEGYGFVEFFT 143 (196)
Q Consensus 118 ~i~~v~i~~d~~tg~~~g~afV~F~~ 143 (196)
+|.+|++..-...|+.++||-|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57778877665668899999999975
No 249
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=42.55 E-value=24 Score=24.96 Aligned_cols=47 Identities=13% Similarity=0.084 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHh-cCC---eeEEE-EeecCCCCCcccEEEEEEcCHHHHHH
Q 037458 102 HWMDENYLHSCFAS-TGE---IASIK-VIRNKQTGLSEGYGFVEFFTHATAEK 149 (196)
Q Consensus 102 ~~~te~~l~~~F~~-~G~---i~~v~-i~~d~~tg~~~g~afV~F~~~~~A~~ 149 (196)
...+..+|++.+.. |+. ++.|. +...-..|.+.|||.| |++.+.|.+
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk 82 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLK 82 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHh
Confidence 35778888888776 443 22222 2222233566677766 677777664
No 250
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=38.77 E-value=4.3 Score=28.78 Aligned_cols=27 Identities=15% Similarity=0.210 Sum_probs=14.5
Q ss_pred HHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEc
Q 037458 108 YLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFF 142 (196)
Q Consensus 108 ~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~ 142 (196)
++..+|...|.|+.. .+ .+||+||+-.
T Consensus 3 ~~~~l~~~~G~Vkwf---n~-----~kGfGFI~~~ 29 (148)
T 3ts2_A 3 DEPQLLHGAGICKWF---NV-----RMGFGFLSMT 29 (148)
T ss_dssp ---CCEEEEEEEEEE---ET-----TTTEEEEEEE
T ss_pred cccccccceeEEEEE---EC-----CCCeeEEeeC
Confidence 444555555555543 22 3589999865
No 251
>4a8j_B Elongator complex protein 5; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_B
Probab=38.56 E-value=1.1e+02 Score=23.72 Aligned_cols=47 Identities=13% Similarity=0.294 Sum_probs=37.8
Q ss_pred CEEEEcCCCC-CCCHHHHHHHHHhcC-------CeeEEEEeecCCCCCcccEEEE
Q 037458 93 KTIWVGDLHH-WMDENYLHSCFASTG-------EIASIKVIRNKQTGLSEGYGFV 139 (196)
Q Consensus 93 ~~lfVgnLp~-~~te~~l~~~F~~~G-------~i~~v~i~~d~~tg~~~g~afV 139 (196)
..|-|..+.. .++||+|...+++|- .+-.+.+...|.+|++.-|.|.
T Consensus 167 TIl~v~~~~~~~~deE~l~~~l~k~~~P~glN~~~f~l~ltnrRKSGRsl~y~f~ 221 (270)
T 4a8j_B 167 TIVDIDVVLTGTLDTEEVSELLNEFRIPRGLNNDIFQLRLVNKRKSGRSLEYDFI 221 (270)
T ss_dssp EEEEEEECCCSSCCHHHHHHHHHTTCCCSSCSCSEEEEEEEEECTTSCEEEEEEE
T ss_pred heEEEecCCCCCccHHHHHHHhhheecccccCCCeEEEEEEeccccCcceEEEEE
Confidence 4566776765 578999999999973 6677888888889999999886
No 252
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=37.86 E-value=46 Score=21.86 Aligned_cols=26 Identities=12% Similarity=0.225 Sum_probs=20.5
Q ss_pred CeeEEEEeecCCCCCcccEEEEEEcC
Q 037458 118 EIASIKVIRNKQTGLSEGYGFVEFFT 143 (196)
Q Consensus 118 ~i~~v~i~~d~~tg~~~g~afV~F~~ 143 (196)
.|.+|++..-...|+.++||-|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57778876655568899999999975
No 253
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=37.67 E-value=47 Score=22.03 Aligned_cols=26 Identities=4% Similarity=0.143 Sum_probs=20.1
Q ss_pred CeeEEEEeecCCCCCcccEEEEEEcC
Q 037458 118 EIASIKVIRNKQTGLSEGYGFVEFFT 143 (196)
Q Consensus 118 ~i~~v~i~~d~~tg~~~g~afV~F~~ 143 (196)
.|.+|++..-...|+.++||-|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 46677776655568889999999975
No 254
>1tr0_A Stable protein 1; plant protein; 1.80A {Populus tremula} SCOP: d.58.4.4 PDB: 1si9_A
Probab=32.99 E-value=98 Score=19.89 Aligned_cols=55 Identities=9% Similarity=0.106 Sum_probs=34.0
Q ss_pred EEEEcCCCCCCCHHHHHHHHH-------hcCCeeEEEEeecCCC---CCcccE--E-EEEEcCHHHHH
Q 037458 94 TIWVGDLHHWMDENYLHSCFA-------STGEIASIKVIRNKQT---GLSEGY--G-FVEFFTHATAE 148 (196)
Q Consensus 94 ~lfVgnLp~~~te~~l~~~F~-------~~G~i~~v~i~~d~~t---g~~~g~--a-fV~F~~~~~A~ 148 (196)
.|.+-.|...++++++.++.+ ....|+++.+-.+... +..+|| + +++|.+.++.+
T Consensus 11 HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~d~~l~~~F~s~e~l~ 78 (108)
T 1tr0_A 11 HTLLTRFKDEITREQIDNYINDYTNLLDLIPSMKSFNWGTDLGMESAELNRGYTHAFESTFESKSGLQ 78 (108)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHHHHHHCTTCCEEEEEECCSCSCTTTTTTCCEEEEEEESSHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCCccccccCCCccEEEEEEECCHHHHH
Confidence 344446788888776554443 3557888888776532 344454 4 36888887754
No 255
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=39.01 E-value=9.2 Score=25.46 Aligned_cols=62 Identities=11% Similarity=0.136 Sum_probs=36.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccE--EEEEEcCHHHHHHHHHHhCC
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGY--GFVEFFTHATAEKVLQSYTS 156 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~--afV~F~~~~~A~~al~~l~g 156 (196)
....+|=|..+ .++++|..+..+.+ +..+.+.+....|+. -| -+=.|.+.++|.+|++.|-.
T Consensus 23 ~~~YTLQL~a~---~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~-WyvVlyG~Y~s~~~A~~A~~~LP~ 86 (106)
T 2lfv_A 23 SSHYTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKKAVSTLPA 86 (106)
Confidence 34455555444 34566777777765 344555443322322 12 23478899999999987654
No 256
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=32.66 E-value=1.2e+02 Score=20.93 Aligned_cols=46 Identities=24% Similarity=0.263 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHh-cCC---eeEEE-EeecCCCCCcccEEEEEEcCHHHHHH
Q 037458 103 WMDENYLHSCFAS-TGE---IASIK-VIRNKQTGLSEGYGFVEFFTHATAEK 149 (196)
Q Consensus 103 ~~te~~l~~~F~~-~G~---i~~v~-i~~d~~tg~~~g~afV~F~~~~~A~~ 149 (196)
..+..+|++.+.. |+. +..|. +...-..|++.|||.| |++.+.|.+
T Consensus 34 Tpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk 84 (135)
T 3u5c_Y 34 NVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKK 84 (135)
T ss_dssp CCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHh
Confidence 5788999988865 442 22222 2233334566777766 677777664
No 257
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=32.35 E-value=98 Score=19.69 Aligned_cols=50 Identities=14% Similarity=0.209 Sum_probs=31.4
Q ss_pred cCCCCCCCHHHHHHHHH-------hcCCeeEEEEeecCCCCCcccE--E-EEEEcCHHHHH
Q 037458 98 GDLHHWMDENYLHSCFA-------STGEIASIKVIRNKQTGLSEGY--G-FVEFFTHATAE 148 (196)
Q Consensus 98 gnLp~~~te~~l~~~F~-------~~G~i~~v~i~~d~~tg~~~g~--a-fV~F~~~~~A~ 148 (196)
-.|...++++++.++.+ ....|+++.+-++.. +..+|| + +++|.+.++.+
T Consensus 11 fk~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~-~~~~~~~~~~~~~F~s~e~l~ 70 (103)
T 2qyc_A 11 MEFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENVA-ARSQGYTHATSSAFVDAAAHD 70 (103)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHHHHSTTEEEEEEEECCC-TTCTTCCEEEEEEESSHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHhhhcCCCeEEEEECCCCC-CCCCCccEEEEEEECCHHHHH
Confidence 35677777665544443 356788888877753 444454 4 36888877654
No 258
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=32.30 E-value=73 Score=18.22 Aligned_cols=55 Identities=9% Similarity=0.025 Sum_probs=38.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEc----CHHHHHHHHHH
Q 037458 93 KTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFF----THATAEKVLQS 153 (196)
Q Consensus 93 ~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~----~~~~A~~al~~ 153 (196)
.++.|.++.-.--...|++.+.....|.++.+-... +-+.|+|. +.++...+++.
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~ 62 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQ------NRADVVFDPNLVKEEDIKEEIED 62 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGG------TEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHH
Confidence 357777776654556788899998888888875543 56788885 44566666664
No 259
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=32.29 E-value=23 Score=17.82 Aligned_cols=19 Identities=37% Similarity=0.620 Sum_probs=12.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHH
Q 037458 90 GENKTIWVGDLHHWMDENYLHSCF 113 (196)
Q Consensus 90 ~~~~~lfVgnLp~~~te~~l~~~F 113 (196)
...++||||+-| ++|+++-
T Consensus 3 gqvrtiwvggtp-----eelkklk 21 (36)
T 2ki0_A 3 GQVRTIWVGGTP-----EELKKLK 21 (36)
T ss_dssp CSCCCCCBCCCH-----HHHHHHH
T ss_pred ceeEEEEecCCH-----HHHHHHH
Confidence 457889998754 5555543
No 260
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=32.19 E-value=49 Score=25.60 Aligned_cols=33 Identities=12% Similarity=0.279 Sum_probs=25.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEe
Q 037458 92 NKTIWVGDLHHWMDENYLHSCFASTGEIASIKVI 125 (196)
Q Consensus 92 ~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~ 125 (196)
...+.|+|||+.++...|.+++.. ..+....++
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm 142 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVFL 142 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEEE
Confidence 356789999999999999999987 666554443
No 261
>1q4r_A Protein AT3G17210; center for eukaryotic structural genom structural genomics, protein structure initiative, CESG, UN function; 1.90A {Arabidopsis thaliana} SCOP: d.58.4.4 PDB: 1q53_A 2q3p_A
Probab=30.66 E-value=1.1e+02 Score=19.81 Aligned_cols=57 Identities=9% Similarity=0.159 Sum_probs=35.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHh-------cCCeeEEEEeecCCC-CCcccE--E-EEEEcCHHHHHH
Q 037458 93 KTIWVGDLHHWMDENYLHSCFAS-------TGEIASIKVIRNKQT-GLSEGY--G-FVEFFTHATAEK 149 (196)
Q Consensus 93 ~~lfVgnLp~~~te~~l~~~F~~-------~G~i~~v~i~~d~~t-g~~~g~--a-fV~F~~~~~A~~ 149 (196)
+.|.+-.|...++++++.++.+. ...|+++.+-++... +..+|| + +++|++.++.+.
T Consensus 12 ~HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~d~~l~~~F~s~e~l~~ 79 (112)
T 1q4r_A 12 KHVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGYTHIFESTFESKEAVAE 79 (112)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHHHHTHHHHCTTCCEEEEEECCCSSSCSTTCCEEEEEEESCHHHHHH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHhhhCCceEEEEEccCCCccccCCCccEEEEEEECCHHHHHH
Confidence 33444467888888776555443 456788888776533 334454 4 468888877654
No 262
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=30.46 E-value=72 Score=23.69 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=20.7
Q ss_pred cccEEEEEEcCHHHHHHHHHHhCCC
Q 037458 133 SEGYGFVEFFTHATAEKVLQSYTSI 157 (196)
Q Consensus 133 ~~g~afV~F~~~~~A~~al~~l~g~ 157 (196)
.+||-|||=.+..++..||+.+.+.
T Consensus 148 lkGYIyVEA~~~~~V~~ai~Gi~~v 172 (200)
T 2exu_A 148 YTGRIYIEAPKQSVIEKFCNGVPDI 172 (200)
T ss_dssp STTEEEEECSCHHHHHHHHTTCTTE
T ss_pred CcEEEEEEECCHHHHHHHHhhhhhh
Confidence 6799999999999999988765543
No 263
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=30.14 E-value=34 Score=16.24 Aligned_cols=12 Identities=17% Similarity=0.199 Sum_probs=10.6
Q ss_pred CHHHHHHHHHhc
Q 037458 105 DENYLHSCFAST 116 (196)
Q Consensus 105 te~~l~~~F~~~ 116 (196)
+|.+|+++.++|
T Consensus 14 nekelrdfiekf 25 (28)
T 1fme_A 14 NEKELRDFIEKF 25 (28)
T ss_dssp CHHHHHHHHHHC
T ss_pred cHHHHHHHHHHh
Confidence 688999999887
No 264
>2gu3_A YPMB protein; APC1927, structural genomics, PSI, protein structure initiat midwest center for structural genomics, MCSG, unknown funct; 1.74A {Bacillus subtilis subsp} SCOP: d.17.1.6 d.17.1.6
Probab=28.52 E-value=70 Score=22.02 Aligned_cols=47 Identities=11% Similarity=0.118 Sum_probs=29.2
Q ss_pred EcCCCCCCCHHHHHHHHH-hcC--CeeEEEEeecC----------CCCCcccEEEEEEcC
Q 037458 97 VGDLHHWMDENYLHSCFA-STG--EIASIKVIRNK----------QTGLSEGYGFVEFFT 143 (196)
Q Consensus 97 VgnLp~~~te~~l~~~F~-~~G--~i~~v~i~~d~----------~tg~~~g~afV~F~~ 143 (196)
|-.+...++++.+++++. .++ .|.++.+-... ......+|-|+.|.+
T Consensus 68 v~~~~~GiSe~~a~~~v~~~~~~~~I~~v~lG~~~~~pVWEV~Y~~~~~~~~Y~~~~F~~ 127 (136)
T 2gu3_A 68 SKEAKEGISEDKAAKIIKDEGLVSKQKEVHLAREGNVLLWEVTYLDKEGQYSLSYVDFTT 127 (136)
T ss_dssp EEEGGGSCCHHHHHHHHHHTTCCSEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEETTT
T ss_pred EEEHhhCCCHHHHHHHHHHhCCccceeEEeeeeECCEEEEEEEEEccCCcEEEEEEEeeC
Confidence 455677899999999995 444 56665543322 112334677888764
No 265
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=27.73 E-value=89 Score=18.96 Aligned_cols=55 Identities=15% Similarity=0.164 Sum_probs=36.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcC----HHHHHHHHHH
Q 037458 93 KTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFT----HATAEKVLQS 153 (196)
Q Consensus 93 ~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~----~~~A~~al~~ 153 (196)
.++.|.++.-..-...|.+.+.....|.++.+-... +.+.|+|.. .+...++++.
T Consensus 5 ~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~~------~~~~V~~~~~~~~~~~i~~~i~~ 63 (90)
T 2g9o_A 5 ATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLEN------RSAIVVYNASSVTPESLRKAIEA 63 (90)
T ss_dssp EEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETTT------TEEEEEECCSSCCTHHHHHHHHT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEccC------CEEEEEECCCCCCHHHHHHHHHh
Confidence 456777765543445688888888888888875442 577888853 3455555654
No 266
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=25.46 E-value=47 Score=20.84 Aligned_cols=44 Identities=11% Similarity=0.079 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHhcCCe-eEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCCCC
Q 037458 104 MDENYLHSCFASTGEI-ASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMP 160 (196)
Q Consensus 104 ~te~~l~~~F~~~G~i-~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g~~~~ 160 (196)
-|+++|+.+++.|-.- .+++ .+|...+.++.++|.+.....+|+
T Consensus 33 ktedelkkyleefrkesqnik-------------vlilvsndeeldkakelaqkmeid 77 (110)
T 2kpo_A 33 KTEDELKKYLEEFRKESQNIK-------------VLILVSNDEELDKAKELAQKMEID 77 (110)
T ss_dssp CSHHHHHHHHHHHTSSTTSEE-------------EEEEESSHHHHHHHHHHHHHTTCC
T ss_pred ccHHHHHHHHHHHHhhccCeE-------------EEEEEcChHHHHHHHHHHHhhcee
Confidence 4789999999888531 1121 244556677777777655555554
No 267
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=24.93 E-value=89 Score=16.83 Aligned_cols=54 Identities=19% Similarity=0.095 Sum_probs=34.4
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEc---CHHHHHHHHHH
Q 037458 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFF---THATAEKVLQS 153 (196)
Q Consensus 94 ~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~---~~~~A~~al~~ 153 (196)
++.|.++.-..-...+++.+.....|..+.+-... +.+.|+|. +.+...++++.
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~i~~~i~~ 60 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEK------KSVVVEFDAPATQDLIKEALLD 60 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETTT------TEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcCC------CEEEEEECCCCCHHHHHHHHHH
Confidence 45566665544456788888888788887775432 56778875 34445555554
No 268
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=24.61 E-value=1.2e+02 Score=19.35 Aligned_cols=62 Identities=6% Similarity=-0.090 Sum_probs=36.9
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeE---EEEeecCCCCCcccEEEEEEcC--HHHHHHHHHHhCCC
Q 037458 94 TIWVGDLHHWMDENYLHSCFASTGEIAS---IKVIRNKQTGLSEGYGFVEFFT--HATAEKVLQSYTSI 157 (196)
Q Consensus 94 ~lfVgnLp~~~te~~l~~~F~~~G~i~~---v~i~~d~~tg~~~g~afV~F~~--~~~A~~al~~l~g~ 157 (196)
.|.|.-....+.+..|.++...||--.+ -.+-. ..+...|.-+|++.. .+..++|+..|...
T Consensus 22 lvrL~f~g~~~~~PvIs~l~~~~~v~vnIL~g~I~~--i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~~ 88 (98)
T 3ced_A 22 IVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKN--TKNGTVGFLVLHIPYISSVDFGKFEKELIER 88 (98)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHHTCCCEEEEEEEEE--ETTEEEEEEEEEESCCCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCccCchHHHHHHHHHCCcEEEEEEEeEE--eCCEeEEEEEEEEeCCCHHHHHHHHHHHHHC
Confidence 3444333345567778888888874333 23222 224555777888874 66778888777543
No 269
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=24.56 E-value=1.5e+02 Score=19.41 Aligned_cols=56 Identities=5% Similarity=-0.010 Sum_probs=34.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHh-------cCCeeEEEEeecCCCCCcccE--EE-EEEcCHHHHH
Q 037458 92 NKTIWVGDLHHWMDENYLHSCFAS-------TGEIASIKVIRNKQTGLSEGY--GF-VEFFTHATAE 148 (196)
Q Consensus 92 ~~~lfVgnLp~~~te~~l~~~F~~-------~G~i~~v~i~~d~~tg~~~g~--af-V~F~~~~~A~ 148 (196)
.+.|.+-.|...++++++.++.+. ...|+++.+-++.. +..+|| +| ++|++.++.+
T Consensus 22 I~HIVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s-~~~~g~d~~l~~~F~s~edl~ 87 (116)
T 3bgu_A 22 IRHIALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLG-LAAGNYDFAVVADLDGEDGFR 87 (116)
T ss_dssp EEEEEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCS-CSTTCCSEEEEEEEEHHHHHH
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCC-CCCCCeeEEEEEEECCHHHHH
Confidence 334444568888888766655544 33577887777643 444443 44 5777776654
No 270
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=24.48 E-value=28 Score=27.08 Aligned_cols=33 Identities=9% Similarity=0.095 Sum_probs=25.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEe
Q 037458 93 KTIWVGDLHHWMDENYLHSCFASTGEIASIKVI 125 (196)
Q Consensus 93 ~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~ 125 (196)
..+.|+|||+.++...|..+++....+..+.++
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m 147 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFM 147 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEE
Confidence 457899999999999999999765555554443
No 271
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=24.28 E-value=46 Score=26.99 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=19.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHh
Q 037458 93 KTIWVGDLHHWMDENYLHSCFAS 115 (196)
Q Consensus 93 ~~lfVgnLp~~~te~~l~~~F~~ 115 (196)
....|||||++++...|..+++.
T Consensus 143 ~~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 143 KFLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHH
T ss_pred ceEEEEECCCchHHHHHHHHHHh
Confidence 34789999999999988888874
No 272
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=23.62 E-value=1.6e+02 Score=19.42 Aligned_cols=58 Identities=16% Similarity=0.117 Sum_probs=36.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHh-------cCCeeEEEEeecCCC-CCcccE--EE-EEEcCHHHHHH
Q 037458 92 NKTIWVGDLHHWMDENYLHSCFAS-------TGEIASIKVIRNKQT-GLSEGY--GF-VEFFTHATAEK 149 (196)
Q Consensus 92 ~~~lfVgnLp~~~te~~l~~~F~~-------~G~i~~v~i~~d~~t-g~~~g~--af-V~F~~~~~A~~ 149 (196)
.+.|.+-.|...++++++.++.+. ...|+++.+-++... +..+|| +| ++|.+.++.+.
T Consensus 21 i~HIVlfklK~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~e~~~~g~~~~l~~~F~s~e~l~~ 89 (121)
T 3bb5_A 21 LYHLVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNRDFEQKSERYPYGFLCTFTDKAALDA 89 (121)
T ss_dssp EEEEEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEBCCTTSSCTTCCEEEEEEESSHHHHHH
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCCCeeEEEEEEECCHHHHHH
Confidence 344555578888887765554443 557888888776532 344454 43 68888877553
No 273
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=23.32 E-value=1.2e+02 Score=17.77 Aligned_cols=56 Identities=9% Similarity=0.058 Sum_probs=39.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEc----CHHHHHHHHHH
Q 037458 92 NKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFF----THATAEKVLQS 153 (196)
Q Consensus 92 ~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~----~~~~A~~al~~ 153 (196)
..++.|.++.-..-...|++.+.....|..+.+-... +.+.|+|. +.+...++++.
T Consensus 10 ~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~ 69 (84)
T 1q8l_A 10 VLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDN------QEATIVYQPHLISVEEMKKQIEA 69 (84)
T ss_dssp EEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTT------TEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHH
Confidence 4568888887765556789999998888888774432 57788885 34455566654
No 274
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=22.89 E-value=1.9e+02 Score=19.79 Aligned_cols=64 Identities=6% Similarity=-0.046 Sum_probs=38.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCC-------------CcccEEEEEEcCHHHHHHHHHH
Q 037458 89 GGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTG-------------LSEGYGFVEFFTHATAEKVLQS 153 (196)
Q Consensus 89 ~~~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg-------------~~~g~afV~F~~~~~A~~al~~ 153 (196)
.+....+|+|++...-.-+.|.+.|.....+.- .++-+.... ....+-|+.|.+.++....+..
T Consensus 21 ~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~l-~i~G~~~~~~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~ 97 (177)
T 2f9f_A 21 CYGDFWLSVNRIYPEKRIELQLEVFKKLQDEKL-YIVGWFSKGDHAERYARKIMKIAPDNVKFLGSVSEEELIDLYSR 97 (177)
T ss_dssp CCCSCEEEECCSSGGGTHHHHHHHHHHCTTSCE-EEEBCCCTTSTHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHHH
T ss_pred CCCCEEEEEeccccccCHHHHHHHHHhCCCcEE-EEEecCccHHHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHHh
Confidence 345678999999877777788888887744432 222221110 0114566777777666666654
No 275
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.75 E-value=1.5e+02 Score=18.68 Aligned_cols=54 Identities=7% Similarity=0.110 Sum_probs=36.0
Q ss_pred EEcCCCCCCCHHHHHHHHHh-cC-CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHH
Q 037458 96 WVGDLHHWMDENYLHSCFAS-TG-EIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQ 152 (196)
Q Consensus 96 fVgnLp~~~te~~l~~~F~~-~G-~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~ 152 (196)
|+-.+....+..+|+..++. |+ .|.+|..+.-+. ...-|||.+....+|.....
T Consensus 26 ~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~---~~KKA~V~L~~~~~a~dva~ 81 (86)
T 3j21_T 26 LTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPR---GEKKAYVKLKPEYSASEVAA 81 (86)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTT---SCEEEEEEECTTSCHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCC---CceEEEEEcCCCCcHHHHHH
Confidence 33446778899999988887 44 566776655431 12358999987766665543
No 276
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=22.68 E-value=75 Score=27.93 Aligned_cols=57 Identities=14% Similarity=0.127 Sum_probs=38.8
Q ss_pred CCCCCCCHHHHHHHHH----hcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCC
Q 037458 99 DLHHWMDENYLHSCFA----STGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTS 156 (196)
Q Consensus 99 nLp~~~te~~l~~~F~----~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~l~g 156 (196)
....+.+-.+|..+|- .+|-|.++.+..-+. -..+.++++.|.+.++|.+++..+-.
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~-P~~~~~~~~~f~d~~~a~~av~~i~~ 410 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPT-PEYQKYGSVAFPNFEQGVACLREIAK 410 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEEC-CSEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccC-CccccccccccCCchhhhhhHHHHHH
Confidence 3444555557777773 467788777755442 33456789999999999988876643
No 277
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=22.00 E-value=2.1e+02 Score=19.94 Aligned_cols=45 Identities=11% Similarity=0.196 Sum_probs=29.8
Q ss_pred HHHHHHhcCCeeEEEEeecC-----CC----------CCcccEEEEEEcCHHHHHHHHHH
Q 037458 109 LHSCFASTGEIASIKVIRNK-----QT----------GLSEGYGFVEFFTHATAEKVLQS 153 (196)
Q Consensus 109 l~~~F~~~G~i~~v~i~~d~-----~t----------g~~~g~afV~F~~~~~A~~al~~ 153 (196)
..++|..||.+.-+...-|- .| +...-|.+|+|.+++..+++..+
T Consensus 50 a~~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~~~k 109 (141)
T 2okq_A 50 AAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQK 109 (141)
T ss_dssp HHHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHH
Confidence 34788999987665443321 11 12234899999999988887754
No 278
>1rjj_A Expressed protein; beta barrel, homodimer, structural genomics, protein structure initiative, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: d.58.4.4
Probab=21.87 E-value=1.7e+02 Score=18.85 Aligned_cols=51 Identities=10% Similarity=0.089 Sum_probs=29.3
Q ss_pred CCCCCCCHHHHHHHHH----hcCCeeEEEEeecC-CC-CCcccE--E-EEEEcCHHHHHH
Q 037458 99 DLHHWMDENYLHSCFA----STGEIASIKVIRNK-QT-GLSEGY--G-FVEFFTHATAEK 149 (196)
Q Consensus 99 nLp~~~te~~l~~~F~----~~G~i~~v~i~~d~-~t-g~~~g~--a-fV~F~~~~~A~~ 149 (196)
.|..++..+.+.+.|. ....|+++.+-++. .. +..+|| + +++|++.++.+.
T Consensus 13 klk~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~l~~~F~s~e~l~~ 72 (111)
T 1rjj_A 13 KFKEDTKVDEILKGLENLVSQIDTVKSFEWGEDKESHDMLRQGFTHAFSMTFENKDGYVA 72 (111)
T ss_dssp ECSSCCCHHHHHHHHHHHHGGGGGSCEEEEEEECCSCTTTSTTCCEEEEEEESSHHHHHH
T ss_pred EECCcchHHHHHHHHHHHHhcCCceEEEEEcCCCCCccccCCCccEEEEEEECCHHHHHH
Confidence 3544444455554443 44567888887765 32 344454 3 468888877653
No 279
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=21.54 E-value=1.2e+02 Score=17.20 Aligned_cols=58 Identities=12% Similarity=0.050 Sum_probs=40.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcC----HHHHHHHHHHh
Q 037458 91 ENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFT----HATAEKVLQSY 154 (196)
Q Consensus 91 ~~~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~----~~~A~~al~~l 154 (196)
...++.|.++.-..-...|++.+.....|.++.+-... +.+.|+|.. .+...++++.+
T Consensus 8 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 69 (79)
T 1kvi_A 8 NSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEE------KNATIIYDPKLQTPKTLQEAIDDM 69 (79)
T ss_dssp EEEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGGG------TEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEccC------CEEEEEECCCCCCHHHHHHHHHHC
Confidence 34568888887776677899999988888777765442 567888863 34555666553
No 280
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=21.38 E-value=1.1e+02 Score=16.68 Aligned_cols=54 Identities=7% Similarity=0.044 Sum_probs=34.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcC---HHHHHHHHHH
Q 037458 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFT---HATAEKVLQS 153 (196)
Q Consensus 94 ~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~---~~~A~~al~~ 153 (196)
++.|.++.-..-...+++.+.....|.++.+-... +.+.|+|.. .+....+++.
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~i~~~i~~ 62 (71)
T 2xmw_A 6 NLQLEGMRCAACASSIERAIAKVPGVQSCQVNFAL------EQAVVSYHGETTPQILTDAVER 62 (71)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEEC---CHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccC------CEEEEEECCCCCHHHHHHHHHH
Confidence 56777776544456688888888888888775442 567788863 3334445544
No 281
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=20.85 E-value=1.2e+02 Score=16.64 Aligned_cols=53 Identities=8% Similarity=0.015 Sum_probs=34.7
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcC---HHHHHHHHH
Q 037458 94 TIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFT---HATAEKVLQ 152 (196)
Q Consensus 94 ~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~---~~~A~~al~ 152 (196)
++.|.++.-..-...+++.+.....|.++.+-... +.+.|+|.. .+....+++
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~i~~~i~ 58 (69)
T 2kt2_A 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPK------GTAQLAIVPGTSPDALTAAVA 58 (69)
T ss_dssp CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETTT------TEEEEEECTTSCHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEccC------CEEEEEECCCCCHHHHHHHHH
Confidence 46677776554456788888888888888775442 567778764 334444444
No 282
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=20.85 E-value=60 Score=24.60 Aligned_cols=29 Identities=10% Similarity=0.039 Sum_probs=22.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeE
Q 037458 93 KTIWVGDLHHWMDENYLHSCFASTGEIAS 121 (196)
Q Consensus 93 ~~lfVgnLp~~~te~~l~~~F~~~G~i~~ 121 (196)
..+.|+|+|+.++...|..+++....+..
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~ 124 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPL 124 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCce
Confidence 44789999999999999998876543333
No 283
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=20.69 E-value=1.9e+02 Score=18.92 Aligned_cols=55 Identities=13% Similarity=0.075 Sum_probs=32.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEc----CHHHHHHHHHH
Q 037458 93 KTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFF----THATAEKVLQS 153 (196)
Q Consensus 93 ~~lfVgnLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~----~~~~A~~al~~ 153 (196)
.++.|.++.-..-...|++.+.....|.++.+-... +.+.|+|. +.++..++++.
T Consensus 82 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~ 140 (149)
T 2ew9_A 82 IELTITGMTCASCVHNIESKLTRTNGITYASVALAT------SKALVKFDPEIIGPRDIIKIIEE 140 (149)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETTT------TEEEEECCTTTSCHHHHHHHHHH
T ss_pred eEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcCC------CEEEEEECCCCCCHHHHHHHHHh
Confidence 356677775544445677777777777776664332 46677775 33445555554
No 284
>3d53_A Inorganic pyrophosphatase; seattle structural G center for infectious disease, ssgcid, hydrolase, magnesium binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A*
Probab=20.33 E-value=2.1e+02 Score=20.59 Aligned_cols=36 Identities=11% Similarity=0.194 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHH
Q 037458 107 NYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQS 153 (196)
Q Consensus 107 ~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~ 153 (196)
++|+.+|+.|-..+ .| |.+.+-.|.+.+.|.+.|+.
T Consensus 133 ~~i~~fF~~YK~le---------~g--K~v~v~gw~~~~~A~~~I~~ 168 (173)
T 3d53_A 133 KRIVHFFEHYKDLE---------KG--KWVKVTGWGDKVKAETLIKE 168 (173)
T ss_dssp HHHHHHHHHTTTTS---------TT--CCEEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcc---------CC--CcEEEccCcCHHHHHHHHHH
Confidence 67889999984322 12 23667788899999888764
No 285
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=20.29 E-value=1.6e+02 Score=24.02 Aligned_cols=50 Identities=24% Similarity=0.129 Sum_probs=34.6
Q ss_pred EEEcCCCCCC----CHHHHHHHHHhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHH
Q 037458 95 IWVGDLHHWM----DENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQS 153 (196)
Q Consensus 95 lfVgnLp~~~----te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~A~~al~~ 153 (196)
-+||||..-. ....+.++..+||.|..+.+- +.-+|...+.+.+..++..
T Consensus 17 PliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g---------~~~~vvv~~p~~~k~il~~ 70 (494)
T 3swz_A 17 PLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG---------TKTTVIVGHHQLAKEVLIK 70 (494)
T ss_dssp CEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHTT
T ss_pred CeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC---------CCCEEEECCHHHHHHHHHh
Confidence 3578775432 135677888899999888762 2446777888888888743
Done!