Query 037461
Match_columns 1077
No_of_seqs 615 out of 2484
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 12:32:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037461.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037461hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5077 Ubiquitin carboxyl-ter 100.0 4E-181 9E-186 1529.6 52.1 996 37-1076 19-1089(1089)
2 KOG1863 Ubiquitin carboxyl-ter 100.0 3E-112 5E-117 1083.4 16.0 1001 47-1077 19-1093(1093)
3 cd02659 peptidase_C19C A subfa 100.0 2.9E-57 6.4E-62 518.7 31.9 320 197-524 1-333 (334)
4 cd02668 Peptidase_C19L A subfa 100.0 2.3E-56 5E-61 509.1 29.3 308 200-521 1-324 (324)
5 cd02663 Peptidase_C19G A subfa 100.0 4E-55 8.7E-60 493.6 26.0 276 200-521 1-300 (300)
6 cd02664 Peptidase_C19H A subfa 100.0 4.8E-55 1E-59 498.5 26.4 286 200-521 1-327 (327)
7 KOG1865 Ubiquitin carboxyl-ter 100.0 1.4E-55 3.1E-60 500.3 17.4 298 188-523 99-410 (545)
8 cd02671 Peptidase_C19O A subfa 100.0 4E-54 8.6E-59 489.4 25.9 284 192-521 18-332 (332)
9 cd02657 Peptidase_C19A A subfa 100.0 7.3E-53 1.6E-57 476.4 25.0 288 200-521 1-305 (305)
10 cd02660 Peptidase_C19D A subfa 100.0 1E-52 2.2E-57 480.0 25.2 280 199-485 1-318 (328)
11 PF14533 USP7_C2: Ubiquitin-sp 100.0 7.2E-53 1.6E-57 448.6 19.0 204 843-1058 1-213 (213)
12 KOG4598 Putative ubiquitin-spe 100.0 2E-53 4.4E-58 479.9 14.5 318 193-553 82-470 (1203)
13 cd02667 Peptidase_C19K A subfa 100.0 2.5E-52 5.4E-57 466.0 20.9 241 200-485 1-269 (279)
14 cd02661 Peptidase_C19E A subfa 100.0 2.6E-50 5.7E-55 454.4 23.0 276 199-485 2-294 (304)
15 KOG1866 Ubiquitin carboxyl-ter 100.0 7.6E-52 1.7E-56 473.5 4.0 328 189-528 86-439 (944)
16 cd02658 Peptidase_C19B A subfa 100.0 2.2E-49 4.9E-54 449.2 23.9 273 200-521 1-311 (311)
17 cd02669 Peptidase_C19M A subfa 100.0 2.7E-49 5.8E-54 466.8 24.9 293 194-521 115-440 (440)
18 PF12436 USP7_ICP0_bdg: ICP0-b 100.0 8.1E-49 1.8E-53 427.2 18.6 220 611-835 30-249 (249)
19 cd02662 Peptidase_C19F A subfa 100.0 3.5E-47 7.7E-52 415.2 22.2 203 200-485 1-229 (240)
20 cd02666 Peptidase_C19J A subfa 100.0 3.6E-47 7.8E-52 431.9 14.9 268 199-521 2-343 (343)
21 cd02665 Peptidase_C19I A subfa 100.0 3E-46 6.5E-51 399.5 19.7 220 200-521 1-228 (228)
22 COG5533 UBP5 Ubiquitin C-termi 100.0 3E-44 6.4E-49 377.1 17.2 283 196-524 69-415 (415)
23 COG5560 UBP12 Ubiquitin C-term 100.0 3.2E-45 6.9E-50 413.8 8.7 298 193-524 260-823 (823)
24 cd02674 Peptidase_C19R A subfa 100.0 2.2E-43 4.8E-48 382.5 18.2 211 200-484 1-219 (230)
25 PF00443 UCH: Ubiquitin carbox 100.0 1.2E-40 2.7E-45 365.8 22.0 245 198-520 1-269 (269)
26 KOG1868 Ubiquitin C-terminal h 100.0 1.3E-40 2.8E-45 395.8 11.9 303 192-528 295-651 (653)
27 cd02673 Peptidase_C19Q A subfa 100.0 1.5E-39 3.1E-44 354.3 19.0 230 201-521 2-245 (245)
28 KOG0944 Ubiquitin-specific pro 100.0 7.1E-39 1.5E-43 366.2 16.9 221 193-421 302-545 (763)
29 cd02257 Peptidase_C19 Peptidas 100.0 1.3E-37 2.8E-42 337.0 21.4 235 200-521 1-255 (255)
30 KOG1867 Ubiquitin-specific pro 100.0 1.2E-37 2.6E-42 365.3 14.6 298 194-524 157-485 (492)
31 cd02672 Peptidase_C19P A subfa 100.0 6.8E-36 1.5E-40 329.8 20.0 236 188-481 5-260 (268)
32 KOG1873 Ubiquitin-specific pro 100.0 5.2E-36 1.1E-40 345.4 5.1 147 346-523 680-877 (877)
33 COG5207 UBP14 Isopeptidase T [ 100.0 2.7E-33 5.9E-38 309.8 17.3 217 198-421 303-535 (749)
34 KOG1870 Ubiquitin C-terminal h 100.0 1.5E-31 3.2E-36 335.1 11.9 297 192-524 240-842 (842)
35 cd02670 Peptidase_C19N A subfa 100.0 9.7E-31 2.1E-35 282.4 13.4 185 200-481 1-221 (241)
36 PF13423 UCH_1: Ubiquitin carb 100.0 4.3E-30 9.4E-35 289.3 19.0 266 199-476 1-295 (295)
37 KOG1864 Ubiquitin-specific pro 100.0 1.4E-30 2.9E-35 310.2 12.5 286 194-486 228-558 (587)
38 KOG1871 Ubiquitin-specific pro 99.9 6.7E-26 1.5E-30 247.4 10.7 300 197-524 27-420 (420)
39 KOG1872 Ubiquitin-specific pro 99.9 9E-26 1.9E-30 252.8 4.6 295 199-523 106-469 (473)
40 cd03772 MATH_HAUSP Herpesvirus 99.9 5.5E-23 1.2E-27 205.3 14.6 129 53-183 1-134 (137)
41 cd03775 MATH_Ubp21p Ubiquitin- 99.9 3.8E-23 8.3E-28 205.5 13.2 124 56-180 2-134 (134)
42 KOG2026 Spindle pole body prot 99.8 8.4E-21 1.8E-25 206.6 13.9 275 192-485 128-429 (442)
43 cd03774 MATH_SPOP Speckle-type 99.8 1.2E-19 2.5E-24 181.8 12.9 126 54-184 4-139 (139)
44 cd03773 MATH_TRIM37 Tripartite 99.8 2.2E-19 4.7E-24 178.1 11.6 122 52-180 2-130 (132)
45 cd00270 MATH_TRAF_C Tumor Necr 99.8 2.1E-18 4.5E-23 174.8 9.3 123 55-179 1-148 (149)
46 cd03776 MATH_TRAF6 Tumor Necro 99.7 6E-18 1.3E-22 171.0 8.0 124 55-180 1-147 (147)
47 cd03779 MATH_TRAF1 Tumor Necro 99.7 4.2E-17 9.1E-22 163.2 11.1 125 55-179 1-146 (147)
48 cd03780 MATH_TRAF5 Tumor Necro 99.7 4.7E-17 1E-21 163.6 11.3 125 55-179 1-147 (148)
49 cd03781 MATH_TRAF4 Tumor Necro 99.7 4.7E-17 1E-21 165.6 11.1 123 55-179 1-153 (154)
50 cd00121 MATH MATH (meprin and 99.7 1.5E-16 3.3E-21 154.5 13.7 123 55-180 1-126 (126)
51 cd03777 MATH_TRAF3 Tumor Necro 99.7 8.6E-17 1.9E-21 167.4 12.2 127 52-180 36-184 (186)
52 KOG1275 PAB-dependent poly(A) 99.7 1.8E-16 3.8E-21 187.6 11.4 305 188-520 489-860 (1118)
53 PF00917 MATH: MATH domain; I 99.6 2.1E-16 4.6E-21 152.9 6.4 116 61-181 1-119 (119)
54 cd03771 MATH_Meprin Meprin fam 99.6 1.1E-15 2.3E-20 155.9 11.4 122 56-179 3-166 (167)
55 cd03778 MATH_TRAF2 Tumor Necro 99.6 1.5E-15 3.3E-20 153.6 12.2 126 52-179 16-163 (164)
56 smart00061 MATH meprin and TRA 99.5 2.9E-14 6.2E-19 132.1 10.7 93 57-155 2-95 (95)
57 cd03783 MATH_Meprin_Alpha Mepr 99.3 8E-12 1.7E-16 126.1 8.5 122 56-179 3-166 (167)
58 cd03782 MATH_Meprin_Beta Mepri 99.2 3.4E-11 7.3E-16 120.8 9.1 122 56-179 3-166 (167)
59 PF15499 Peptidase_C98: Ubiqui 98.4 1.1E-06 2.5E-11 93.2 9.8 221 202-475 6-252 (275)
60 KOG1987 Speckle-type POZ prote 98.0 2.3E-05 5E-10 88.7 10.8 125 56-188 5-132 (297)
61 KOG1864 Ubiquitin-specific pro 96.3 0.0011 2.3E-08 80.9 0.3 99 201-299 34-154 (587)
62 PF12436 USP7_ICP0_bdg: ICP0-b 94.2 2.1 4.6E-05 47.3 17.3 197 805-1018 1-227 (249)
63 PF14533 USP7_C2: Ubiquitin-sp 93.8 0.53 1.1E-05 50.8 11.5 156 758-925 15-185 (213)
64 PF08715 Viral_protease: Papai 93.4 0.39 8.5E-06 54.6 9.9 101 193-328 97-199 (320)
65 KOG1887 Ubiquitin carboxyl-ter 90.9 0.054 1.2E-06 66.7 -0.9 191 279-487 549-774 (806)
66 KOG3556 Familial cylindromatos 88.8 0.19 4E-06 58.7 1.3 31 198-228 368-398 (724)
67 COG5560 UBP12 Ubiquitin C-term 88.3 2.1 4.5E-05 51.8 9.4 122 847-984 443-566 (823)
68 PF05408 Peptidase_C28: Foot-a 88.1 0.24 5.2E-06 50.9 1.4 30 451-482 136-165 (193)
69 KOG1870 Ubiquitin C-terminal h 87.5 1.4 3E-05 57.2 8.1 139 848-991 420-564 (842)
70 PF11976 Rad60-SLD: Ubiquitin- 86.6 0.8 1.7E-05 40.1 3.8 55 670-733 14-69 (72)
71 cd01763 Sumo Small ubiquitin-r 86.5 2.4 5.3E-05 38.9 7.0 74 647-735 8-81 (87)
72 cd01768 RA RA (Ras-associating 86.5 2.9 6.2E-05 38.1 7.5 64 863-928 2-66 (87)
73 smart00314 RA Ras association 84.8 3.7 8.1E-05 37.7 7.5 63 862-926 4-66 (90)
74 KOG0297 TNF receptor-associate 84.6 0.74 1.6E-05 54.3 3.4 76 52-127 277-365 (391)
75 cd06406 PB1_P67 A PB1 domain i 83.3 5.1 0.00011 36.2 7.2 63 762-837 5-67 (80)
76 PF11543 UN_NPL4: Nuclear pore 82.4 1.5 3.2E-05 39.7 3.6 62 667-734 14-77 (80)
77 cd01783 DAGK_delta_RA Ubiquiti 79.9 7 0.00015 36.6 7.1 62 862-926 4-70 (97)
78 cd01807 GDX_N ubiquitin-like d 77.9 4.4 9.5E-05 35.8 5.1 47 977-1030 10-56 (74)
79 PF08817 YukD: WXG100 protein 75.6 3.7 8.1E-05 36.9 4.0 62 670-735 16-79 (79)
80 cd01798 parkin_N amino-termina 75.0 6.3 0.00014 34.3 5.2 47 977-1030 8-54 (70)
81 PF05408 Peptidase_C28: Foot-a 72.8 6.2 0.00013 40.9 5.2 37 193-229 28-65 (193)
82 cd01805 RAD23_N Ubiquitin-like 69.4 11 0.00023 33.4 5.4 71 652-737 2-74 (77)
83 cd01809 Scythe_N Ubiquitin-lik 69.3 8.6 0.00019 33.3 4.8 69 651-734 1-69 (72)
84 cd01782 AF6_RA_repeat1 Ubiquit 68.3 41 0.00089 32.1 9.0 65 850-915 11-78 (112)
85 PF00788 RA: Ras association ( 67.5 16 0.00034 33.3 6.4 68 862-930 4-72 (93)
86 cd01792 ISG15_repeat1 ISG15 ub 65.5 11 0.00024 33.8 4.8 49 977-1030 12-60 (80)
87 PF14560 Ubiquitin_2: Ubiquiti 64.0 14 0.0003 33.7 5.3 67 863-930 2-69 (87)
88 cd01799 Hoil1_N Ubiquitin-like 63.4 9.7 0.00021 34.0 3.9 33 975-1007 10-42 (75)
89 cd01769 UBL Ubiquitin-like dom 63.2 9.5 0.00021 32.4 3.8 31 977-1007 7-37 (69)
90 PF14560 Ubiquitin_2: Ubiquiti 62.3 21 0.00044 32.6 6.0 68 670-738 17-84 (87)
91 PF00240 ubiquitin: Ubiquitin 62.3 10 0.00023 32.6 3.9 57 671-736 10-66 (69)
92 cd01807 GDX_N ubiquitin-like d 61.9 13 0.00027 32.9 4.4 68 652-734 2-69 (74)
93 cd01791 Ubl5 UBL5 ubiquitin-li 61.7 25 0.00054 31.2 6.2 59 863-931 2-60 (73)
94 cd01806 Nedd8 Nebb8-like ubiq 60.1 17 0.00037 31.8 5.0 71 652-737 2-72 (76)
95 PTZ00044 ubiquitin; Provisiona 59.4 13 0.00028 32.8 4.0 31 977-1007 10-40 (76)
96 PTZ00044 ubiquitin; Provisiona 59.1 15 0.00033 32.4 4.4 70 652-736 2-71 (76)
97 cd01810 ISG15_repeat2 ISG15 ub 58.8 12 0.00027 32.9 3.8 56 671-735 13-68 (74)
98 PF00240 ubiquitin: Ubiquitin 57.3 15 0.00032 31.6 4.0 31 977-1007 5-35 (69)
99 PF11976 Rad60-SLD: Ubiquitin- 55.6 20 0.00044 31.1 4.6 36 977-1014 10-45 (72)
100 cd01791 Ubl5 UBL5 ubiquitin-li 54.7 16 0.00035 32.4 3.8 45 977-1028 11-55 (73)
101 cd01803 Ubiquitin Ubiquitin. U 54.7 22 0.00048 31.1 4.8 69 653-736 3-71 (76)
102 cd01813 UBP_N UBP ubiquitin pr 54.5 16 0.00034 32.5 3.7 48 977-1028 9-56 (74)
103 cd01789 Alp11_N Ubiquitin-like 54.3 47 0.001 30.2 6.9 66 863-930 2-67 (84)
104 cd01798 parkin_N amino-termina 54.2 14 0.0003 32.2 3.3 54 671-733 13-66 (70)
105 cd01796 DDI1_N DNA damage indu 53.9 16 0.00034 32.1 3.6 45 977-1028 9-53 (71)
106 cd01803 Ubiquitin Ubiquitin. U 52.7 17 0.00038 31.7 3.7 31 977-1007 10-40 (76)
107 cd01794 DC_UbP_C dendritic cel 52.3 17 0.00036 31.9 3.5 47 977-1030 8-54 (70)
108 smart00213 UBQ Ubiquitin homol 52.0 37 0.0008 28.3 5.5 56 862-930 2-57 (64)
109 smart00213 UBQ Ubiquitin homol 51.6 19 0.00041 30.0 3.7 28 979-1006 11-38 (64)
110 cd01796 DDI1_N DNA damage indu 51.5 21 0.00045 31.4 3.9 55 671-734 14-69 (71)
111 cd01810 ISG15_repeat2 ISG15 ub 50.6 22 0.00048 31.3 4.0 47 977-1030 8-54 (74)
112 cd01797 NIRF_N amino-terminal 50.1 40 0.00087 30.2 5.7 57 673-738 19-75 (78)
113 cd06407 PB1_NLP A PB1 domain i 48.7 22 0.00048 32.3 3.8 26 980-1005 12-37 (82)
114 cd01806 Nedd8 Nebb8-like ubiq 47.6 23 0.00049 31.0 3.6 31 977-1007 10-40 (76)
115 cd01793 Fubi Fubi ubiquitin-li 46.2 25 0.00054 31.0 3.7 55 671-734 13-67 (74)
116 cd00196 UBQ Ubiquitin-like pro 46.2 26 0.00056 27.8 3.6 31 977-1007 7-37 (69)
117 cd01802 AN1_N ubiquitin-like d 45.1 44 0.00095 31.8 5.4 74 648-736 25-98 (103)
118 cd01812 BAG1_N Ubiquitin-like 45.1 25 0.00054 30.4 3.5 31 977-1007 9-39 (71)
119 PF14836 Ubiquitin_3: Ubiquiti 42.6 84 0.0018 29.1 6.5 69 665-738 12-81 (88)
120 cd01802 AN1_N ubiquitin-like d 42.4 34 0.00073 32.6 4.1 47 977-1030 37-83 (103)
121 cd01804 midnolin_N Ubiquitin-l 42.1 30 0.00065 30.9 3.6 44 977-1027 11-54 (78)
122 TIGR03180 UraD_2 OHCU decarbox 42.0 26 0.00056 36.0 3.5 28 974-1002 105-132 (158)
123 cd01792 ISG15_repeat1 ISG15 ub 41.6 62 0.0013 29.0 5.6 50 877-931 14-63 (80)
124 cd06406 PB1_P67 A PB1 domain i 41.4 33 0.00072 31.1 3.6 35 979-1016 12-46 (80)
125 cd01800 SF3a120_C Ubiquitin-li 41.3 37 0.00081 30.1 4.0 58 671-737 12-69 (76)
126 PF11543 UN_NPL4: Nuclear pore 41.1 30 0.00065 31.3 3.4 29 980-1008 16-44 (80)
127 cd01812 BAG1_N Ubiquitin-like 40.8 43 0.00093 28.9 4.3 55 671-734 14-68 (71)
128 cd01809 Scythe_N Ubiquitin-lik 39.9 44 0.00095 28.8 4.2 30 977-1006 10-39 (72)
129 cd01799 Hoil1_N Ubiquitin-like 38.4 36 0.00078 30.4 3.4 57 670-735 16-73 (75)
130 cd01790 Herp_N Homocysteine-re 38.3 1.1E+02 0.0025 27.7 6.5 63 863-931 2-64 (79)
131 cd01793 Fubi Fubi ubiquitin-li 38.3 34 0.00073 30.1 3.2 45 979-1030 10-54 (74)
132 cd01769 UBL Ubiquitin-like dom 38.2 54 0.0012 27.7 4.5 55 671-734 12-66 (69)
133 smart00666 PB1 PB1 domain. Pho 37.9 47 0.001 29.6 4.2 29 977-1005 10-38 (81)
134 cd06411 PB1_p51 The PB1 domain 37.8 67 0.0014 29.0 4.9 57 777-837 9-65 (78)
135 cd01800 SF3a120_C Ubiquitin-li 36.5 44 0.00094 29.7 3.7 31 977-1007 7-37 (76)
136 PF14836 Ubiquitin_3: Ubiquiti 36.2 1.9E+02 0.0041 26.9 7.7 64 876-942 14-79 (88)
137 cd06408 PB1_NoxR The PB1 domai 35.6 87 0.0019 28.9 5.4 34 774-807 11-44 (86)
138 PF04110 APG12: Ubiquitin-like 34.9 1.6E+02 0.0035 27.2 7.1 70 761-839 1-71 (87)
139 TIGR02958 sec_mycoba_snm4 secr 33.5 93 0.002 37.6 6.9 65 671-739 16-82 (452)
140 PF09379 FERM_N: FERM N-termin 32.4 67 0.0014 28.4 4.3 55 876-931 7-62 (80)
141 cd01789 Alp11_N Ubiquitin-like 32.3 1E+02 0.0022 28.0 5.5 65 670-737 16-81 (84)
142 KOG1892 Actin filament-binding 31.7 1.1E+02 0.0023 39.5 6.9 96 829-928 11-110 (1629)
143 cd01794 DC_UbP_C dendritic cel 30.7 53 0.0011 28.8 3.2 53 671-732 13-65 (70)
144 cd01781 AF6_RA_repeat2 Ubiquit 29.5 1.6E+02 0.0034 28.0 6.1 36 879-914 19-55 (100)
145 cd01804 midnolin_N Ubiquitin-l 29.2 1.6E+02 0.0034 26.3 6.0 69 652-736 3-71 (78)
146 cd01795 USP48_C USP ubiquitin- 28.7 98 0.0021 29.3 4.6 62 668-737 16-77 (107)
147 COG3478 Predicted nucleic-acid 27.9 49 0.0011 28.5 2.3 34 363-396 3-39 (68)
148 cd01612 APG12_C Ubiquitin-like 27.3 5E+02 0.011 23.9 9.1 75 761-846 1-77 (87)
149 cd01775 CYR1_RA Ubiquitin doma 26.8 2.7E+02 0.0058 26.3 7.1 47 878-926 15-61 (97)
150 KOG3206 Alpha-tubulin folding 26.8 1.5E+02 0.0033 31.6 6.1 79 863-944 2-80 (234)
151 cd01808 hPLIC_N Ubiquitin-like 26.5 78 0.0017 27.5 3.5 45 977-1029 10-54 (71)
152 KOG1769 Ubiquitin-like protein 26.3 1.5E+02 0.0033 28.0 5.4 59 670-737 34-92 (99)
153 cd01813 UBP_N UBP ubiquitin pr 25.4 1.6E+02 0.0035 26.0 5.4 58 671-734 14-71 (74)
154 cd06407 PB1_NLP A PB1 domain i 24.7 1.7E+02 0.0038 26.6 5.5 28 775-802 10-37 (82)
155 TIGR03164 UHCUDC OHCU decarbox 24.6 70 0.0015 32.9 3.3 28 974-1002 105-132 (157)
156 cd01805 RAD23_N Ubiquitin-like 24.6 94 0.002 27.2 3.8 27 977-1003 10-36 (77)
157 PF11470 TUG-UBL1: GLUT4 regul 23.9 74 0.0016 27.7 2.8 29 877-905 8-36 (65)
158 cd01768 RA RA (Ras-associating 23.5 1.6E+02 0.0035 26.5 5.2 37 669-705 15-52 (87)
159 PF02991 Atg8: Autophagy prote 23.5 64 0.0014 30.8 2.5 27 880-906 37-63 (104)
160 smart00666 PB1 PB1 domain. Pho 23.1 1.9E+02 0.0042 25.6 5.5 57 775-837 11-67 (81)
161 PRK13798 putative OHCU decarbo 22.2 83 0.0018 32.7 3.3 28 974-1002 110-137 (166)
162 cd01808 hPLIC_N Ubiquitin-like 22.2 1.4E+02 0.0031 25.8 4.4 56 670-734 13-68 (71)
163 PTZ00380 microtubule-associate 22.2 86 0.0019 30.8 3.1 45 880-931 45-89 (121)
164 PF00788 RA: Ras association ( 22.1 1.7E+02 0.0037 26.4 5.1 51 654-704 4-55 (93)
165 cd01797 NIRF_N amino-terminal 22.0 93 0.002 27.9 3.2 47 977-1030 10-58 (78)
166 PF00789 UBX: UBX domain; Int 21.4 2.5E+02 0.0053 25.0 5.9 78 649-736 5-82 (82)
167 PF14847 Ras_bdg_2: Ras-bindin 21.2 99 0.0021 29.6 3.3 49 981-1030 14-67 (105)
168 PF14353 CpXC: CpXC protein 21.0 61 0.0013 31.8 2.0 45 318-372 2-46 (128)
No 1
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-181 Score=1529.61 Aligned_cols=996 Identities=36% Similarity=0.602 Sum_probs=889.6
Q ss_pred chhhhcccC--CCCCCCCCCcEEEEEEccccccCCCeeecCcEEECCeeEEEEEEeCCCCCCceEEEEEecCCCC---CC
Q 037461 37 PETANAVEN--NQPLDDPPSSRFTWRIENFSRLNTKKHYSEIFIVGGFKWRVLIFPKGNNVDHLSMYLDVADSSS---LP 111 (1077)
Q Consensus 37 ~~~~~~~~~--~~~~~~~~~~~~tw~I~nfS~l~~~~~~Sp~F~vGG~~WrIll~P~Gn~~~~lSiyL~~~~~~~---~~ 111 (1077)
++++...++ +|+.++..+..|+|+|++||.+. ++..||+|.+||+.|+|.+||+|+++..+|+||+....+. ..
T Consensus 19 d~~I~~~L~~~~pd~Ee~~~~sftW~vk~wsel~-~k~~Sp~F~vg~~twki~lfPqG~nq~~~sVyLe~~pqe~e~~~g 97 (1089)
T COG5077 19 DKSIGSILPQFDPDVEELLEMSFTWKVKRWSELA-KKVESPPFSVGGHTWKIILFPQGNNQCNVSVYLEYEPQELEETGG 97 (1089)
T ss_pred chhHHHhhhhcCccHHHHhhcccceecCChhhhh-hhccCCcccccCeeEEEEEecccCCccccEEEEEeccchhhhhcC
Confidence 566666555 78889999999999999999994 6899999999999999999999998877999999875431 12
Q ss_pred CCceEEEEEEEEEEeecCCcceeeecceeecCCCCCCCcccccccccccCCCCC---CcccccceeeeEEEEEEeecc--
Q 037461 112 YGWSRYAQFSLAVINQIHSKYSVRKDTQHQFNARESDWGFTSFMPLGELYDPNR---GYLVNDTLIVEAEVIVRRVVD-- 186 (1077)
Q Consensus 112 ~~W~~~a~f~l~Lln~~~~~~~~~~~~~h~F~~~~~dwGf~~Fi~l~~L~~~~~---gfl~nD~l~Ie~~V~V~~~~~-- 186 (1077)
..|.|||||+|.|.|+..|+....++++|+|+....||||++|+.++.|..|+. +|++++++.|+|+|||++++.
T Consensus 98 k~~~ccaqFaf~Is~p~~pti~~iN~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkdPTGV 177 (1089)
T COG5077 98 KYYDCCAQFAFDISNPKYPTIEYINKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKDPTGV 177 (1089)
T ss_pred cchhhhhheeeecCCCCCCchhhhhcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeCCccc
Confidence 359999999999999999998888999999999999999999999999987653 689999999999999999965
Q ss_pred cc----ccCCccccceeecccCCcccchhhhhHHHhhhHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccc
Q 037461 187 YW----SYDSKKETGYVGLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDSSVAT 262 (1077)
Q Consensus 187 ~~----~~dsk~~~g~vGL~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~l~~~Lq~Lf~~l~~s~~~v~~ 262 (1077)
+| +|+||+.||||||+|+|+||||||+||+||.+..||+.+|.+|+ ++..+.++++++||++|++||.++.++++
T Consensus 178 LWHsF~nYnSKkeTGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~ipT-d~p~grdSValaLQr~Fynlq~~~~PvdT 256 (1089)
T COG5077 178 LWHSFLNYNSKKETGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPT-DHPRGRDSVALALQRLFYNLQTGEEPVDT 256 (1089)
T ss_pred eeecccccccccceeeeeeccCCceeeHHHHHHHHHHHHHHHHHhhcCCC-CCCCccchHHHHHHHHHHHHhccCCCcch
Confidence 34 99999999999999999999999999999999999999999998 56667789999999999999999999999
Q ss_pred hhhhhhccCCcccccccccHHHHHHHHHHHHHHHhcCCccccccccccceEEeeEEEeeeeeeecceeeeeeeeeeeecC
Q 037461 263 KELTKSFGWDTYDSFMQHDVQELNRVLSEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKG 342 (1077)
Q Consensus 263 ~~l~~s~~~~~~~~~~QqDa~Efl~~Lld~Le~e~~~~~~~~~i~~lF~G~~~~~i~C~~C~~~s~~~E~f~~L~L~v~~ 342 (1077)
.+|+++|||.+.++++|||+|||.++|+|.||..|+++..++.++.+|.|+|++++.|.+..++|.+.|.||+++|++++
T Consensus 257 teltrsfgWds~dsf~QHDiqEfnrVl~DnLEksmrgt~VEnaln~ifVgkmksyikCvnvnyEsarvedfwdiqlNvK~ 336 (1089)
T COG5077 257 TELTRSFGWDSDDSFMQHDIQEFNRVLQDNLEKSMRGTVVENALNGIFVGKMKSYIKCVNVNYESARVEDFWDIQLNVKG 336 (1089)
T ss_pred HHhhhhcCcccchHHHHHhHHHHHHHHHHHHHHhhcCChhhhHHhHHHHHHhhceeeEEEechhhhhHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHhhccceEEecCCCcccccccCeeeceeeEEeccCCCeEEEEEeeEEEecccCeeeeccceEeeCcccccccc
Q 037461 343 CRDVYASFDKYVEVERLEGDNKYHAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRE 422 (1077)
Q Consensus 343 ~~sL~esL~~~~~~E~l~g~n~y~C~~c~~~~a~k~~~i~~lP~vLiI~LkRF~~d~~~~~~~Ki~~~v~FP~~LdL~~~ 422 (1077)
.++|++||++|++.|+|+|+|+|.|+++|.|+|+|++.|.+|||||+||||||+||..++.++|||++++||++|||
T Consensus 337 ~knLqeSfr~yIqvE~l~GdN~Y~ae~~GlqdAkKGViFeSlPpVlhlqLKRFeyDfe~d~mvKINDryEFP~eiDl--- 413 (1089)
T COG5077 337 MKNLQESFRRYIQVETLDGDNRYNAEKHGLQDAKKGVIFESLPPVLHLQLKRFEYDFERDMMVKINDRYEFPLEIDL--- 413 (1089)
T ss_pred hhhHHHHHHHhhhheeccCCcccccccccchhhccceeeccCchHHHHHHHHhccccccCceeeecccccCcchhcc---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcCcCCC--ccEEEEEEEEeeeccCCceEEEEEEeCCCCCEEEEeCceeeEecHHHHHHHhcCCCCCCCCCCC
Q 037461 423 NGKYLSPDADRSVR--NLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDLKRALEEQYGGEEELPQTNP 500 (1077)
Q Consensus 423 ~~~yl~~~~~~~~~--~~Y~L~gVVvH~Gs~~~GHY~ayvr~~~~~~Wy~fnD~~Vt~vs~~evl~~~~Gg~~~~~~~~~ 500 (1077)
.||+++++++++. +.|.|+||+||+|+.+.|||||++|+..+|+||+|||++||+++..+|+++||||+.... +
T Consensus 414 -~pfld~da~ksen~d~vY~LygVlVHsGDl~~GHyYallKpe~dg~WykfdDtrVtrat~kevleeNfGgd~~~~---~ 489 (1089)
T COG5077 414 -LPFLDRDADKSENSDAVYVLYGVLVHSGDLHEGHYYALLKPEKDGRWYKFDDTRVTRATEKEVLEENFGGDHPYK---D 489 (1089)
T ss_pred -ccccCchhhhhcccCcEEEEEEEEEeccccCCceEEEEeccccCCCceeecceehhhHHHHHHHHHhcCCCCCCc---c
Confidence 9999999887766 999999999999999999999999999999999999999999999999999999975321 1
Q ss_pred CCCCCCccccCCCcEEEEEEEeccCccccccCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccceeEEecchhHHhh
Q 037461 501 GFNNTPFKFTKYSNAYMLVYIRESDKDKIICNVDEQDIAEHLRERLKKEQEEKEHKKKEKAEAHLYTVIKVARDDDLLEQ 580 (1077)
Q Consensus 501 ~~~~~~~~~~~~~~AYmLfY~R~~~~~~i~~~v~~~~ip~~l~~~~~~e~~~~e~~~~e~~e~~~~~~~~~~~~~~~~~~ 580 (1077)
..+ ...++.|..+||||+|.|++..+.++.||...+||+|+.+++.++..+.|.|.+|++|+|+|..++++|.+.|.+|
T Consensus 490 k~r-~~~~~kRfmsAYmLvYlRks~~ddLlnPV~a~diP~hv~e~l~eei~~~e~r~kei~e~hlYr~vrl~tid~f~~y 568 (1089)
T COG5077 490 KIR-DHSGIKRFMSAYMLVYLRKSMLDDLLNPVAAVDIPPHVEEVLSEEIDKTEVRCKEIDEIHLYRGVRLYTIDSFIHY 568 (1089)
T ss_pred ccc-CCchhhhhhhhheeeeehHhHHHhhhCchhhhhCCHHHHHhhCHHHHHHHHHHHHHHHhhhheeeEEeecchhhhc
Confidence 111 1234778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceecccCCCC------CcEEEEecccccceeeeccchhhhccccCC------------------------------
Q 037461 581 IGKDIYFDLVDHDK------VRSFRIQKQIPFNLFKVGQLREVSNKVHNA------------------------------ 624 (1077)
Q Consensus 581 ~~~~~~fdl~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 624 (1077)
+| ||..|++. ...+++++.++++++. ..+.+.++..+..
T Consensus 569 hg----FDy~Dfs~~~~d~~l~qf~iKr~akisdl~-~~iae~ln~pqs~~~r~w~m~krhn~tvrvd~P~n~vnit~~e 643 (1089)
T COG5077 569 HG----FDYPDFSSELNDSGLAQFVIKRGAKISDLR-NNIAEHLNTPQSLYLREWTMIKRHNKTVRVDRPCNRVNITTRE 643 (1089)
T ss_pred cC----cCchhhhhhcccccceeEEeecCCCHHHHH-HHHHHHcCCCceeeeEEEEEEeccccceeecCcchhhhhHHHH
Confidence 99 99988874 5789999999998885 2222222222211
Q ss_pred ----------ceEEEEEeecC-CCCC-CCCCCCCCCCcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCC
Q 037461 625 ----------ELKLFLEVERG-PDLR-PIAPPEKTKEDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGY 692 (1077)
Q Consensus 625 ----------~~~l~~e~~~~-~~~~-~~~~~~~~~~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 692 (1077)
.+++|||.... .++. ...........+.||+||||+.+|++.|+|++.|.+..+|+++.|.|++ .|
T Consensus 644 ~~~m~tr~ge~l~~yle~~iEhnqL~s~~~~~lt~d~~~~ifvkyfd~~tq~i~gfg~lhvnk~~~issisp~ied--~~ 721 (1089)
T COG5077 644 LVGMNTRTGEELRSYLERIIEHNQLDSQRKVALTKDGVINIFVKYFDYTTQPISGFGGLHVNKFLKISSISPWIED--SI 721 (1089)
T ss_pred HhhccchhHHHHHHHHHhhhhhhhhhhhhheeecCCcceEEEEEeeccccccccCccchhhhhhcccccccHHHhh--cc
Confidence 23344442211 1110 0111223456799999999999999999999999999999999999999 99
Q ss_pred CCCCcEEEEEEeecCCcccccccccccccccccCCCCCEEEEEecCCCCCCCCCCCCCHHHHHHHHhcceEEEEEecCCC
Q 037461 693 APDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICFQKSTPIEGVGKFRYPEVPSFLDYVHNRQVVHFRSLEKP 772 (1077)
Q Consensus 693 ~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~GdIi~fQ~~~~~~~~~~~~~~~~~~yy~~L~nr~~v~f~~~~~~ 772 (1077)
|.+++|.+||||| |+ |++-|.++.||.++|++.||||||+++...+......|.++..+|+||++||.|.|+.....
T Consensus 722 ssn~plt~yeeik--pg-mvd~i~~n~t~~~sei~tgDIi~Fe~p~a~e~Dts~~ydsa~klydfl~~rVlv~frrfsd~ 798 (1089)
T COG5077 722 SSNLPLTLYEEIK--PG-MVDTIGDNITFIGSEIGTGDIICFEVPGAVEFDTSSAYDSALKLYDFLQGRVLVAFRRFSDE 798 (1089)
T ss_pred cCCCCcchhhhhc--cC-ccccccCCcceeecccCcCcEEEEeccCcccccccccchhhhHHHHhhcCcEEEEEEeeccc
Confidence 9999999999997 88 56999999999999999999999998766666666679999999999999999999954322
Q ss_pred -CCCCeEEEecccCCHHHHHHHHHHHcCCCCCCcEEEeeccccCCCCCCCcccccCccchHHhhhc-cCC-CcceeeEEE
Q 037461 773 -KEDDFCLEMSKLYTYDDVVERVAQQLGLDDPSKIRLTSHNCYSQQPKPQPIKYRGVDHLSDMLIH-YNQ-TSDVLYYEV 849 (1077)
Q Consensus 773 -~~~~f~~~ls~~~~Y~~~~~~v~~~l~~~~p~~lr~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~-~~~~l~Yev 849 (1077)
....|+++|+....|++||..||.++++ +|.+||+++++..+..+. +-++..+.-+|.+.|.. ++. +....+||+
T Consensus 799 ~~~~vfefll~~~~~Yddlcr~vs~~~hv-~p~ylr~~~~~~l~~~~r-~vv~s~s~fll~eal~ss~e~~q~p~~~yev 876 (1089)
T COG5077 799 YRENVFEFLLFIGDFYDDLCRNVSCKLHV-TPFYLRGTKSTELEDRIR-RVVGSKSIFLLKEALSSSSEFRQAPVDFYEV 876 (1089)
T ss_pred cccceEEEeeecCccHHHHHHHhccccCC-ChhHheeeeccCcccccc-eeeCCchHhHHHHHhcchhhhccCCcceeee
Confidence 2347999999999999999999999997 599999999765544443 45566556799999965 333 345679999
Q ss_pred eccChhhhcccceEEEEEEcCCCCeEEEEEEEcCCCCCHHHHHHHHhhccccCCC-CccEEEEEEeccEEEEecCCcccc
Q 037461 850 LDIPLPELQCLKTLKVAFHHATKDEVSVHTIRLPKQSTVGDVINDLKTKVELSQP-DAELRLLEVFYHKIYKIFPLNEKI 928 (1077)
Q Consensus 850 L~i~l~elE~~k~~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~~~~~-~~~lRl~ev~~~ki~~~~~~~~~i 928 (1077)
|++||+|||.+|.+++.|+++++.+++.+++++.|++|+.|+|..+..|++++++ ..++|+|++.++|+.+.++..+.+
T Consensus 877 ldvpLseler~r~irl~flsngy~h~~l~ef~v~kdyt~~d~l~~v~~Kvg~tde~kk~vlv~e~~n~r~~r~hsl~tl~ 956 (1089)
T COG5077 877 LDVPLSELERKRLIRLCFLSNGYQHVYLAEFYVEKDYTAVDHLHIVVTKVGCTDELKKSVLVYEVVNLRPVRGHSLKTLI 956 (1089)
T ss_pred cCccHHHHhcccceEEEEeecCceEEEEEEEeecccccHHHHHHHHHhhcCCcHhhhhcEEEEEEeecceecccCccceE
Confidence 9999999999999999999999999999999999999999999999999999985 468999999999999999999999
Q ss_pred cccccccceEEeeecchhhhcCCCCCeEEEEEEeeccCccccccccccCcceEEEeccCCcHHHHHHHHHHHhCCCcccc
Q 037461 929 ENINDQYWTLRAEEIPEEEKNLGPHDRLIHVYHFTKETAQNQMQIQNFGEPFFLVIHEGETLQEIKVRIQRKLQVPDEEF 1008 (1077)
Q Consensus 929 ~~i~~~~~~~~~E~iP~~e~~~~~~~~~i~v~hf~k~~~~~h~~~~~fGiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f 1008 (1077)
.+++. ..++++|.+|.|+.++..+++.|.|.||+|+..|.| ||||+|+|.++|+|.+||.||++|+|.++|+|
T Consensus 957 ~d~n~-~stlygev~pleq~ql~t~e~~VvVqhffkdl~r~h------gi~f~f~i~p~etf~dtk~rl~arfg~~~k~F 1029 (1089)
T COG5077 957 IDDNV-RSTLYGEVFPLEQEQLTTNEMCVVVQHFFKDLIRTH------GIPFMFVIVPFETFLDTKVRLVARFGYKYKLF 1029 (1089)
T ss_pred Eeccc-cceeeeEecchhhhccccCCcEEEEeHHHHHHHHhc------CCceEEEeccccccchhHHHHHHHhCCCceee
Confidence 99986 679999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred cceEEEEEe---cC----CCcccCCcccccccccccccCCccceeeeeeCCCCCCccccccccCCCCCccceEec
Q 037461 1009 AKWKFAFLS---LG----RPEYLQDTDIVSSRFQRRDVYGAWEQYLGLEHSDSAPKRAYAANQNRHTYEKPVKIY 1076 (1077)
Q Consensus 1009 ~k~k~a~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~lgldh~~~~~~~~~~~~~~~~~~~~~i~i~ 1076 (1077)
+|+|++++. .+ ++.|++|++|+++.+.+.+- .| ||||++.++ .|+++|||.|+
T Consensus 1030 skikl~vg~s~~~g~~~~~~~~fnDedilyd~ie~l~~------il-lDhp~~~~~--------~~~~Drai~mK 1089 (1089)
T COG5077 1030 SKIKLFVGKSYTDGELDWPMSYFNDEDILYDLIERLDY------IL-LDHPDRLRS--------HSSYDRAIIMK 1089 (1089)
T ss_pred eeEEEEEeecccccccccccccccchhhhhhhhhccCc------ee-ecCcccccC--------ccccccceecC
Confidence 999999994 23 57999999998888765553 45 999999954 25799999885
No 2
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-112 Score=1083.37 Aligned_cols=1001 Identities=38% Similarity=0.528 Sum_probs=850.8
Q ss_pred CCCCCCCCcEEEEEEccccccCCCeeecCcEEECCeeEEEEEEeCCCCCCceEEEEEecCCCCCCCCceEEEEEEEEEEe
Q 037461 47 QPLDDPPSSRFTWRIENFSRLNTKKHYSEIFIVGGFKWRVLIFPKGNNVDHLSMYLDVADSSSLPYGWSRYAQFSLAVIN 126 (1077)
Q Consensus 47 ~~~~~~~~~~~tw~I~nfS~l~~~~~~Sp~F~vGG~~WrIll~P~Gn~~~~lSiyL~~~~~~~~~~~W~~~a~f~l~Lln 126 (1077)
+...+...+..+|++.++..+. .+..||.|..|+.+|+++++|+|+....+++|++|...... ..|+|++++.+.+.|
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~v~~ 96 (1093)
T KOG1863|consen 19 PDQQTSLNQSTTIDGIDDKSLL-YRALSSNFGAGATKWKILIAPKVNSLQSTRKKLEVMPSQSL-KSWSCGAQAVLRVKN 96 (1093)
T ss_pred ccccchhcccccccCcCcchhh-hHhcCccccccccceeeeeccccCcccceeEEeeeccCCCC-cceEecchhhhcccc
Confidence 4445556666779988888875 48999999999999999999999988999999999987665 559999999999999
Q ss_pred ecCCcceeeecceeecCCCCCCCcccccccccccCCCCCCcccccceeeeEEEEEEeeccc-cccCCccccce-eecccC
Q 037461 127 QIHSKYSVRKDTQHQFNARESDWGFTSFMPLGELYDPNRGYLVNDTLIVEAEVIVRRVVDY-WSYDSKKETGY-VGLKNQ 204 (1077)
Q Consensus 127 ~~~~~~~~~~~~~h~F~~~~~dwGf~~Fi~l~~L~~~~~gfl~nD~l~Ie~~V~V~~~~~~-~~~dsk~~~g~-vGL~N~ 204 (1077)
..++.....+.++|.|.....||||++|+.++++.++..||+.+|++.+++.|+|..+++. +.||+|+.+|+ +||+|+
T Consensus 97 ~~~~~~~~~~~~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~d~k~~tg~~vGL~N~ 176 (1093)
T KOG1863|consen 97 TIDNLPDPEKAIHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTSLMNPYDSKRLTGFPVGLKNL 176 (1093)
T ss_pred CCCCchhhhhhhhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCcccchhhhhhcCCCCccccCC
Confidence 6666677788899999999999999999999999999999999999999999999998776 79999999999 999999
Q ss_pred CcccchhhhhHHHhhhHHHHHHhccCCC-CCCCCCCCCHHHHHHHHHHHHhcCCC-cccchhhhhhccCCcccccccccH
Q 037461 205 GATCYMNSLLQTLFHIPYFRKAVYHMPT-TENDMPSGSIPLALQSLFYKLQYSDS-SVATKELTKSFGWDTYDSFMQHDV 282 (1077)
Q Consensus 205 GnTCYmNSvLQ~L~~~p~fr~~l~~~~~-~~~~~~~~~l~~~Lq~Lf~~l~~s~~-~v~~~~l~~s~~~~~~~~~~QqDa 282 (1077)
||||||||+||+||+++.||++||+++. ..+..+..+++.+||+||+.||.++. +|+|.+++++|+|.+..+++|||+
T Consensus 177 GaTCY~NsllQ~lf~~~~FR~~Vy~~~~~~~~~~~~~~v~~~lq~lF~~LQ~s~~k~Vdt~~~~~~~~~~~~~~~~QqDv 256 (1093)
T KOG1863|consen 177 GATCYVNSLLQVLFLIPEFRRAVYSIPPFTGHEDPRRSIPLALQRLFYELQMSKRKYVDTSELTKSLGWDSNDSFEQQDV 256 (1093)
T ss_pred CceeeehHHHHHHHccHHHHHHHhcCCCCCCcccccchHHHHHHHHHHHHhhcCCCCcCchhhhhhhhcccccHHhhhhH
Confidence 9999999999999999999999999993 25667778899999999999999987 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCccccccccccceEEeeEEEeeeeeeecceeeeeeeeeeeecCCCCHHHHHhhccceEEecCC
Q 037461 283 QELNRVLSEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGD 362 (1077)
Q Consensus 283 ~Efl~~Lld~Le~e~~~~~~~~~i~~lF~G~~~~~i~C~~C~~~s~~~E~f~~L~L~v~~~~sL~esL~~~~~~E~l~g~ 362 (1077)
|||+++|+|.|++.++++...+.+.++|.|++.+++.|..|++++.+.|.|++++|++++..++.++|+.|++.|.++|+
T Consensus 257 qEf~~~l~d~LE~~~~~~~~~~~l~~lf~g~~~~~i~c~~~~~~s~r~e~f~d~ql~~~g~~nl~~sf~~y~~~E~l~gd 336 (1093)
T KOG1863|consen 257 QEFLTKLLDWLEDSMIDAKVENTLQDLFTGKMKSVIKCIDVDFESSRSESFLDLQLNGKGVKNLEDSLHLYFEAEILLGD 336 (1093)
T ss_pred HHHHHHHHHHHHhhccchhhhhhhhhhhcCCcceEEEEEeeeeeccccccccCccccccchhhHHHHHHHhhhHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccCeeeceeeEEeccCCCeEEEEEeeEEEecccCeeeeccceEeeCcccccccccCCCCCC-CcCcCCCc-cEE
Q 037461 363 NKYHAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRENGKYLSP-DADRSVRN-LYT 440 (1077)
Q Consensus 363 n~y~C~~c~~~~a~k~~~i~~lP~vLiI~LkRF~~d~~~~~~~Ki~~~v~FP~~LdL~~~~~~yl~~-~~~~~~~~-~Y~ 440 (1077)
|+|.+++.+.++|.+++.+.+||+||+|||+||.|+..++...|++++++||..|+| .+|+.. ..+.+... .|+
T Consensus 337 n~~~~~~~~~~~a~k~~~f~~lPpvl~~qL~Rf~~~~~~~~~~Ki~d~~~fp~~i~~----d~~~~~~~~~~~~~~~~y~ 412 (1093)
T KOG1863|consen 337 NKYDAECHGLQDAKKGVLFDSLPPVLFIQLMRFEYDFSTGQKIKINDKFEFPLIIDM----DRYLSRFKAEESERSAVYS 412 (1093)
T ss_pred ccccccccchhhhhcceeeccCCchhhhhhhheeeeccCCceeehhhccCCcccccc----chhccccchhhhhccceec
Confidence 997777778999999999999999999999999999999999999999999999999 566552 34444444 999
Q ss_pred EEEEEEeeeccCCceEEEEEEeCCCCCEEEEeCceeeEecHHHHHHHhcCCCCCCCCCCCCCCCCCccccCCCcEEEEEE
Q 037461 441 LHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDLKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVY 520 (1077)
Q Consensus 441 L~gVVvH~Gs~~~GHY~ayvr~~~~~~Wy~fnD~~Vt~vs~~evl~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~AYmLfY 520 (1077)
|+||++|.|+.++|||++|+++...++|++|||..|+.++..+|++.+|||++..... .....+||||+|
T Consensus 413 l~~v~vh~g~~~~ghy~~~i~~~~~~~w~kfdd~~v~~~~~~~~l~~~~g~~~~~~~~----------~~~~~~~~~lv~ 482 (1093)
T KOG1863|consen 413 LHAVLVHSGDAHSGHYVAYINPKLDGKWVKFDDLVVTVVSEKEALEQNYGTEEIELSS----------TADFKNAYMLVY 482 (1093)
T ss_pred cchhhcccccccCccceeeecchhhccceeccCceeeeccHHHHHHhhCCCcchhhhc----------ccccCCcceEEE
Confidence 9999999889999999999999889999999999999999999999999998653211 112245999999
Q ss_pred EeccCccccccCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccceeEEecchhHHhhcCCcceecccCC----CCCc
Q 037461 521 IRESDKDKIICNVDEQDIAEHLRERLKKEQEEKEHKKKEKAEAHLYTVIKVARDDDLLEQIGKDIYFDLVDH----DKVR 596 (1077)
Q Consensus 521 ~R~~~~~~i~~~v~~~~ip~~l~~~~~~e~~~~e~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~fdl~~~----~~~~ 596 (1077)
.|.+..++++++++++.+|.++.+.+..+..+.+.++++.+++++|+.++.++++.+..+.| |++.+. ....
T Consensus 483 ~~~s~~~~~~~~v~e~~i~~~l~~~~~~e~~~~~~k~k~~~~~~l~~~i~~~~~d~~~~~~~----~~~~~~~~~~~~~~ 558 (1093)
T KOG1863|consen 483 IRDSCESKILKDISESSIPYHLSETLQKEKYKTEEKDKELEEARLSAVIRALSDDQLIKQHG----FDVEDELYEPEQYR 558 (1093)
T ss_pred EecCcHHhhhcccchhhccHHHHHHhhhhhhhhhhhhhhhHHhhhhhhhhccCccchhhhcc----chHhhhhcccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999 887776 2345
Q ss_pred EEEEecccccceee------eccchh---------------------------------hhccccCCceEEEEEeec---
Q 037461 597 SFRIQKQIPFNLFK------VGQLRE---------------------------------VSNKVHNAELKLFLEVER--- 634 (1077)
Q Consensus 597 ~~~~~~~~~~~~~~------~~~~~~---------------------------------~~~~~~~~~~~l~~e~~~--- 634 (1077)
++|+.+...+.++. ++..+. ...+..+..+..|++...
T Consensus 559 ~~r~~~~~~~~eli~~~~~~~~~~~~~~~~~w~~~~r~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 638 (1093)
T KOG1863|consen 559 TLRAAKIEELSELITRLLGEFELPPSVQPRLWPLGYRNNLTVLPQYLFNIAPLRSYILDITEKVLNDLWHEYLELAVEEI 638 (1093)
T ss_pred HHHHHhhhhHHHHHHHHHhhccCCccccchhhhhhccccceEeeecccccchhhhhhhhhhhhhccchHHHHHHHHhhhc
Confidence 66777766665554 000000 000000011222222211
Q ss_pred -CCCCCCCCCCCCCCCcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCccccc
Q 037461 635 -GPDLRPIAPPEKTKEDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCE 713 (1077)
Q Consensus 635 -~~~~~~~~~~~~~~~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie 713 (1077)
+.+ ....+......+.++|+|+||+.++.+.++|+...+...+..++.+.++++.++++++.+..|+|++.+...+|+
T Consensus 639 ~~~~-~~~~~~~~~~~~~~lf~k~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~d~~~~~~~e~~~~~~~~id 717 (1093)
T KOG1863|consen 639 GGNE-VRRLPSFQFTRDLLLFLKMYDDRKRSVTPSGELAYLALTPLRLLQVLLNELIGVVDDTSTREYSELKEEKDERID 717 (1093)
T ss_pred Cccc-ccccccccchHHHHHHHHHhccccccccchhhccccccCchhhhhhhhhhhcccCCccchHHHHHhcchhhhcch
Confidence 111 111233444556799999999999999999999999999999999999999999999999999999844334678
Q ss_pred ccccccccccccCCCCCEEEEEecCCCCCCCCCCCCCHHHHHHHHhcceEEEEEecCCCCCC-CeEEEecccCCHHHHHH
Q 037461 714 PIEKRCTFRASQLEDGDIICFQKSTPIEGVGKFRYPEVPSFLDYVHNRQVVHFRSLEKPKED-DFCLEMSKLYTYDDVVE 792 (1077)
Q Consensus 714 ~i~~~~tf~~~el~~GdIi~fQ~~~~~~~~~~~~~~~~~~yy~~L~nr~~v~f~~~~~~~~~-~f~~~ls~~~~Y~~~~~ 792 (1077)
.+....+|..+++++|||+||+..... ......++++.+|++++.+|..+.|..+..+..+ .|+++++..++|.+++.
T Consensus 718 ~~~~~~~~~~~~~~d~~~~~~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~~~ 796 (1093)
T KOG1863|consen 718 KIAEEKSFDLSELEDGDISVVEEEAAS-KDSESNRADVSEFLENVENRTLQRFRKVSSEIEENSFVLGRQQRVTECILAV 796 (1093)
T ss_pred hhhhhhhhhhhhhhcCCeeeecccccC-CcccccccchHHHHHHHHHHHHHHHhcccccccccccccchhhhhhhhHHHH
Confidence 888889999999999999999987544 3566789999999999999999999998877776 89999999999999999
Q ss_pred HHHHHcCCCCCCcEEEeecc-ccCCCCCCCcccccCccchHHhhhcc--CCCccee-eEEEeccChhhhcccceEEEEEE
Q 037461 793 RVAQQLGLDDPSKIRLTSHN-CYSQQPKPQPIKYRGVDHLSDMLIHY--NQTSDVL-YYEVLDIPLPELQCLKTLKVAFH 868 (1077)
Q Consensus 793 ~v~~~l~~~~p~~lr~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~l-~YevL~i~l~elE~~k~~kv~w~ 868 (1077)
.|+.+|++ +|..++.++.. ++.-.+.+...+.+....+...+.++ ......+ +|.++++++.|+..++.+++.|+
T Consensus 797 ~v~~~l~~-~p~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l 875 (1093)
T KOG1863|consen 797 LVQLALGK-DPISIDSDRAEYDLEKIRFNGTVKLSQVLLDATQLVRDPRERFVSLLKVQFVLPKTIVELLDLKYFKDEWL 875 (1093)
T ss_pred HHHHHhcC-CchhccccccCCchhhccccCcceeeccccccccccccccccccccceecccCCcceeccccccccchhhh
Confidence 99999997 58888888753 33334444455555433333333332 2344555 55599999999999999999999
Q ss_pred cCCCCeEEEEEEEcCCCCCHH-HHHHHHhhccccCC-CCccEEEEEEeccEEEEecCCcccccccccccc---------e
Q 037461 869 HATKDEVSVHTIRLPKQSTVG-DVINDLKTKVELSQ-PDAELRLLEVFYHKIYKIFPLNEKIENINDQYW---------T 937 (1077)
Q Consensus 869 ~~~~~~~~~~~~~v~k~~tv~-dll~~l~~~~~~~~-~~~~lRl~ev~~~ki~~~~~~~~~i~~i~~~~~---------~ 937 (1077)
.....+...+.+.+.|.+||. |++.++.+++.+++ ...++|++++.+.++++.......+..|+..++ +
T Consensus 876 ~~~~~~~~~~~~~~~k~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 955 (1093)
T KOG1863|consen 876 VDMENGVEIMTLAVTKLGTILPDILREVYDRVPLDPFKSDAFRLFEVTSMKLYKETSYQKLLEELNQSYQSFELLLRDLF 955 (1093)
T ss_pred ccccccchhhheeccccchhhHHHHHHHHhhcccCcccccceeEEeecchHHHHhccchhHHHHHhHHHhhHHhhhcccc
Confidence 999999999999999999999 99999999999987 578999999999999999999999998887665 3
Q ss_pred EEeeecchhhhcCC-CCCeEEEEEEeeccCccccccccccCcceEEEeccCCcHHHHHHHHHHHhC-CCcccccceEEEE
Q 037461 938 LRAEEIPEEEKNLG-PHDRLIHVYHFTKETAQNQMQIQNFGEPFFLVIHEGETLQEIKVRIQRKLQ-VPDEEFAKWKFAF 1015 (1077)
Q Consensus 938 ~~~E~iP~~e~~~~-~~~~~i~v~hf~k~~~~~h~~~~~fGiPF~~~i~~~E~~~~~k~ri~~~~~-~~~~~f~k~k~a~ 1015 (1077)
+|+|++|.+++... +.++++.|.||+|+..+. +|+||.+++.+||++.++|.||+.+++ ++++.|++||+|.
T Consensus 956 ~r~~~v~~~~~~~~~~~~~~~~~~~~~k~~~~n------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~k~~~ 1029 (1093)
T KOG1863|consen 956 LRGESVPLLEILSSKGAPKLELVIHFSKELVQN------IGNELNLLIVQGESLKENKDHLFDDLKEVSDELFSVFKHAG 1029 (1093)
T ss_pred cccccCcHHHHhhcccccceeehhhcchhhhhh------cchhhHHHhccchhHHHHHHHHHHHHHHhhHHHhHHHhhhh
Confidence 99999999999887 455899999999999544 499999999999999999999999999 9999999999999
Q ss_pred EecCCCcccCCccc---ccccccccccCCccceeeeeeCCCCCCccccccccCCCCCccceEecC
Q 037461 1016 LSLGRPEYLQDTDI---VSSRFQRRDVYGAWEQYLGLEHSDSAPKRAYAANQNRHTYEKPVKIYN 1077 (1077)
Q Consensus 1016 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~lgldh~~~~~~~~~~~~~~~~~~~~~i~i~n 1077 (1077)
++.+...++..+.. ..+.-...+..+.+..++||||.+++|++.+--.+++ ..++||+|+|
T Consensus 1030 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~v~~~n 1093 (1093)
T KOG1863|consen 1030 ASVGHYWKYIQDFNLIYRKDNDEEIDVVSEPEVFLDLSGNNANPYFLSYLRQGQ-IIEEPVKIEN 1093 (1093)
T ss_pred hhhccchhhhhccccccccccchhhhcccCcccccccCCCCCCchhhhhhhccc-chhhhhhccC
Confidence 86666433222211 1122222334456667999999999999875444555 6899999998
No 3
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.9e-57 Score=518.72 Aligned_cols=320 Identities=55% Similarity=0.886 Sum_probs=278.8
Q ss_pred ceeecccCCcccchhhhhHHHhhhHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcc-cchhh--hhhccCCc
Q 037461 197 GYVGLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDSSV-ATKEL--TKSFGWDT 273 (1077)
Q Consensus 197 g~vGL~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~l~~~Lq~Lf~~l~~s~~~v-~~~~l--~~s~~~~~ 273 (1077)
|++||.|+||||||||+||+|+++|+||++++++.......+..++.++|+.||..|+.+.... .+..+ ...++|..
T Consensus 1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (334)
T cd02659 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTEDDDDNKSVPLALQRLFLFLQLSESPVKTTELTDKTRSFGWDS 80 (334)
T ss_pred CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCcccCcccccHHHHHHHHHHHHHhCCccccCcchhheeccCCCCC
Confidence 7999999999999999999999999999999987433344556789999999999999875433 33332 46777888
Q ss_pred ccccccccHHHHHHHHHHHHHHHhcCCccccccccccceEEeeEEEeeeeeeecceeeeeeeeeeeecCCCCHHHHHhhc
Q 037461 274 YDSFMQHDVQELNRVLSEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKY 353 (1077)
Q Consensus 274 ~~~~~QqDa~Efl~~Lld~Le~e~~~~~~~~~i~~lF~G~~~~~i~C~~C~~~s~~~E~f~~L~L~v~~~~sL~esL~~~ 353 (1077)
+..+.||||+||+..|++.|++++++....+.+.++|+|++.+.++|..|+..+.+.++|++|+|++++..+++++|+.|
T Consensus 81 ~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~~~l~~~l~~~ 160 (334)
T cd02659 81 LNTFEQHDVQEFFRVLFDKLEEKLKGTGQEGLIKNLFGGKLVNYIICKECPHESEREEYFLDLQVAVKGKKNLEESLDAY 160 (334)
T ss_pred CCcccchhHHHHHHHHHHHHHHHhccCcccchhhhhCceEEEeEEEecCCCceecccccceEEEEEcCCCCCHHHHHHHh
Confidence 89999999999999999999999987777788999999999999999999999999999999999999999999999999
Q ss_pred cceEEecCCCcccccccCe-eeceeeEEeccCCCeEEEEEeeEEEecccCeeeeccceEeeCcccccccccCCCCCCCc-
Q 037461 354 VEVERLEGDNKYHAEQYGL-QDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRENGKYLSPDA- 431 (1077)
Q Consensus 354 ~~~E~l~g~n~y~C~~c~~-~~a~k~~~i~~lP~vLiI~LkRF~~d~~~~~~~Ki~~~v~FP~~LdL~~~~~~yl~~~~- 431 (1077)
+.+|.++|.|+|.|+.|+. +.+.++..|.++|++|+|||+||.|+..++...|+++.|+||..||| .+|+....
T Consensus 161 ~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vLii~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl----~~~~~~~~~ 236 (334)
T cd02659 161 VQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFPLELDM----EPYTEKGLA 236 (334)
T ss_pred cCeeEecCCccEecCcCCCcccEEEEEEeecCCCEEEEEeeeeEEccccCcceeCCceEeCCceecC----ccccccccc
Confidence 9999999999999999985 48999999999999999999999999888888999999999999999 66765432
Q ss_pred --------CcCCCccEEEEEEEEeeeccCCceEEEEEEeCCCCCEEEEeCceeeEecHHHHHHHhcCCCCCCCCCCCCCC
Q 037461 432 --------DRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDLKRALEEQYGGEEELPQTNPGFN 503 (1077)
Q Consensus 432 --------~~~~~~~Y~L~gVVvH~Gs~~~GHY~ayvr~~~~~~Wy~fnD~~Vt~vs~~evl~~~~Gg~~~~~~~~~~~~ 503 (1077)
.......|+|+|||+|.|+.++|||+||+|...++.||+|||+.|++++.++|++.+|||......-.++
T Consensus 237 ~~~~~~~~~~~~~~~Y~L~~vI~H~G~~~~GHY~~~vk~~~~~~W~~~nD~~V~~i~~~~v~~~~~g~~~~~~~~~~~-- 314 (334)
T cd02659 237 KKEGDSEKKDSESYIYELHGVLVHSGDAHGGHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAEEECFGGEETQKTYDSG-- 314 (334)
T ss_pred cccccccccCCCCeeEEEEEEEEecCCCCCCCeEEEEECCCCCceEEEeCcccEECCHHHHHHHcCCCcccccccccc--
Confidence 2345678999999999999999999999998768999999999999999999999999998542211111
Q ss_pred CCCccccCCCcEEEEEEEecc
Q 037461 504 NTPFKFTKYSNAYMLVYIRES 524 (1077)
Q Consensus 504 ~~~~~~~~~~~AYmLfY~R~~ 524 (1077)
.....++++||||||+|++
T Consensus 315 --~~~~~~~~~ay~l~Y~~~~ 333 (334)
T cd02659 315 --PRAFKRTTNAYMLFYERKS 333 (334)
T ss_pred --ccccccccceEEEEEEEeC
Confidence 1223456799999999976
No 4
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.3e-56 Score=509.10 Aligned_cols=308 Identities=34% Similarity=0.543 Sum_probs=262.7
Q ss_pred ecccCCcccchhhhhHHHhhhHHHHHHhccCCCCCCC----------CCCCCHHHHHHHHHHHHhcCC-Ccccchhhhhh
Q 037461 200 GLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTTEND----------MPSGSIPLALQSLFYKLQYSD-SSVATKELTKS 268 (1077)
Q Consensus 200 GL~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~----------~~~~~l~~~Lq~Lf~~l~~s~-~~v~~~~l~~s 268 (1077)
||.|+||||||||+||+|+++|+||++++.....+.. ....++.++|++||..|+.+. .+++|..|.++
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~~~~i~p~~f~~~ 80 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGFVKA 80 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCCCceEChHHHHHH
Confidence 8999999999999999999999999999887643210 123579999999999999865 57899999999
Q ss_pred ccCCcccccccccHHHHHHHHHHHHHHHhcC---CccccccccccceEEeeEEEeeeeeeecceeeeeeeeeeeecCCCC
Q 037461 269 FGWDTYDSFMQHDVQELNRVLSEKLEDKMKG---TVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRD 345 (1077)
Q Consensus 269 ~~~~~~~~~~QqDa~Efl~~Lld~Le~e~~~---~~~~~~i~~lF~G~~~~~i~C~~C~~~s~~~E~f~~L~L~v~~~~s 345 (1077)
+++ ..++||||+||+..||+.|+++++. ....+.+.++|.|++.+.+.|..|++.+.+.|+|++|+|+|++..+
T Consensus 81 l~~---~~~~QqDa~EFl~~lLd~L~~~l~~~~~~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~~s 157 (324)
T cd02668 81 LGL---DTGQQQDAQEFSKLFLSLLEAKLSKSKNPDLKNIVQDLFRGEYSYVTQCSKCGRESSLPSKFYELELQLKGHKT 157 (324)
T ss_pred hCC---CCccccCHHHHHHHHHHHHHHHHhhccCCcccchhhhhcceEEEEEEEeCCCCCccccccccEEEEEEecccCC
Confidence 964 4678999999999999999999874 3345788999999999999999999999999999999999999999
Q ss_pred HHHHHhhccceEEecCCCcccccccC-eeeceeeEEeccCCCeEEEEEeeEEEecccCeeeeccceEeeCcccccccccC
Q 037461 346 VYASFDKYVEVERLEGDNKYHAEQYG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRENG 424 (1077)
Q Consensus 346 L~esL~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vLiI~LkRF~~d~~~~~~~Ki~~~v~FP~~LdL~~~~~ 424 (1077)
|+++|+.|+.+|.++|+|+|.|+.|+ ++.|.|+..|.++|++|+|||+||.||..++...|+++.|+||..||| +
T Consensus 158 l~~~L~~~~~~e~l~g~~~~~C~~C~~~~~a~k~~~i~~lP~iLii~LkRf~~d~~~~~~~Ki~~~v~fp~~Ldl----~ 233 (324)
T cd02668 158 LEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISFPEILDM----G 233 (324)
T ss_pred HHHHHHHhhCceecCCCccccCCCCCceeeeEEEEEecCCCCeEEEEEEcceeecccCcceeCCcEEECCCeEec----h
Confidence 99999999999999999999999997 678999999999999999999999999888889999999999999999 7
Q ss_pred CCCCCCcCcCCCccEEEEEEEEeeec-cCCceEEEEEEeCCCCCEEEEeCceeeEecHHHHHHHhcCCCCCCCCCCCCCC
Q 037461 425 KYLSPDADRSVRNLYTLHSVLVHSGG-VHGGHYYAFIRPTLSDQWYKFDDERVTKEDLKRALEEQYGGEEELPQTNPGFN 503 (1077)
Q Consensus 425 ~yl~~~~~~~~~~~Y~L~gVVvH~Gs-~~~GHY~ayvr~~~~~~Wy~fnD~~Vt~vs~~evl~~~~Gg~~~~~~~~~~~~ 503 (1077)
+|+.... ..+..|+|+|||+|.|+ +++|||+||+|+..+++||+|||+.|++++.+.+.+...++.........
T Consensus 234 ~~~~~~~--~~~~~Y~L~~vI~H~G~~~~~GHY~~~~k~~~~~~W~~fdD~~V~~i~~~~~~~~~~~~~~~~~~~~~--- 308 (324)
T cd02668 234 EYLAESD--EGSYVYELSGVLIHQGVSAYSGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKLGNSEDPAKPRKSEI--- 308 (324)
T ss_pred hhccccc--CCCcEEEEEEEEEEcCCCCCCEeeEEEEECCCCCcEEEEECCceEEcCHHHhhccccccccccccccc---
Confidence 8875442 34678999999999995 89999999999976789999999999999999886543322111000000
Q ss_pred CCCccccCCCcEEEEEEE
Q 037461 504 NTPFKFTKYSNAYMLVYI 521 (1077)
Q Consensus 504 ~~~~~~~~~~~AYmLfY~ 521 (1077)
......+.+||||||+
T Consensus 309 --~~~~~~~~~~y~l~y~ 324 (324)
T cd02668 309 --KKGTHSSRTAYMLVYK 324 (324)
T ss_pred --CCCccccCceEEEEeC
Confidence 0112346799999995
No 5
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4e-55 Score=493.63 Aligned_cols=276 Identities=30% Similarity=0.547 Sum_probs=245.8
Q ss_pred ecccCCcccchhhhhHHHhhhHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHhcCC---CcccchhhhhhccC--Ccc
Q 037461 200 GLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSD---SSVATKELTKSFGW--DTY 274 (1077)
Q Consensus 200 GL~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~l~~~Lq~Lf~~l~~s~---~~v~~~~l~~s~~~--~~~ 274 (1077)
||.|+||||||||+||+|++ .++.++|+.||.+|+.+. ..++|..|.+++++ +.|
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~--------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~~~~~f 60 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF--------------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKRENELF 60 (300)
T ss_pred CccCCCcceehhHHHHHhhh--------------------HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhhcCCC
Confidence 89999999999999999998 468899999999999864 46899999999974 578
Q ss_pred cccccccHHHHHHHHHHHHHHHhcCC-----------------ccccccccccceEEeeEEEeeeeeeecceeeeeeeee
Q 037461 275 DSFMQHDVQELNRVLSEKLEDKMKGT-----------------VVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQ 337 (1077)
Q Consensus 275 ~~~~QqDa~Efl~~Lld~Le~e~~~~-----------------~~~~~i~~lF~G~~~~~i~C~~C~~~s~~~E~f~~L~ 337 (1077)
..++||||+||++.|||.|+++++.. ...+.|.++|+|++.+.++|..|++.+.+.|+|++|+
T Consensus 61 ~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~Ls 140 (300)
T cd02663 61 DNYMHQDAHEFLNFLLNEIAEILDAERKAEKANRKLNNNNNAEPQPTWVHEIFQGILTNETRCLTCETVSSRDETFLDLS 140 (300)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCcCCCChhhhCceEEEeeEEeCCCCCCccccceeEEec
Confidence 89999999999999999999988632 2346789999999999999999999999999999999
Q ss_pred eeecCCCCHHHHHhhccceEEecCCCcccccccC-eeeceeeEEeccCCCeEEEEEeeEEEecccCeeeeccceEeeCcc
Q 037461 338 LDVKGCRDVYASFDKYVEVERLEGDNKYHAEQYG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQ 416 (1077)
Q Consensus 338 L~v~~~~sL~esL~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vLiI~LkRF~~d~~~~~~~Ki~~~v~FP~~ 416 (1077)
|+|++..+|++||+.|+++|.++|+|+|.|+.|+ +++|.|+..|.++|+||+|||+||.|+...+...|++++|.||.+
T Consensus 141 l~i~~~~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~ 220 (300)
T cd02663 141 IDVEQNTSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFPLE 220 (300)
T ss_pred cCCCCcCCHHHHHHHhhcccccCCCCcEECCCCCCceeEEEEEEeccCCceeEEEEEeEEeecccCCceecCceEecCcE
Confidence 9999999999999999999999999999999997 678999999999999999999999999776678999999999999
Q ss_pred cccccccCCCCCCCcCcCCCccEEEEEEEEeeec-cCCceEEEEEEeCCCCCEEEEeCceeeEecHHHHHHHhcCCCCCC
Q 037461 417 LDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGG-VHGGHYYAFIRPTLSDQWYKFDDERVTKEDLKRALEEQYGGEEEL 495 (1077)
Q Consensus 417 LdL~~~~~~yl~~~~~~~~~~~Y~L~gVVvH~Gs-~~~GHY~ayvr~~~~~~Wy~fnD~~Vt~vs~~evl~~~~Gg~~~~ 495 (1077)
|+| .++... .......|+|+|||+|.|+ +++|||+||+|. +++||+|||+.|++++.++|.+ .+|+..
T Consensus 221 L~~----~~~~~~--~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~~k~--~~~W~~fdD~~V~~~~~~~v~~-~~~~~~-- 289 (300)
T cd02663 221 LRL----FNTTDD--AENPDRLYELVAVVVHIGGGPNHGHYVSIVKS--HGGWLLFDDETVEKIDENAVEE-FFGDSP-- 289 (300)
T ss_pred Eec----cccccc--cCCCCeEEEEEEEEEEecCCCCCCceEEEEEC--CCcEEEEcCCceEEcCHHHHHH-hcCCCC--
Confidence 999 555322 2234579999999999995 899999999999 8999999999999999988854 566643
Q ss_pred CCCCCCCCCCCccccCCCcEEEEEEE
Q 037461 496 PQTNPGFNNTPFKFTKYSNAYMLVYI 521 (1077)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~AYmLfY~ 521 (1077)
.+.+||||||+
T Consensus 290 ---------------~~~~aYiLfY~ 300 (300)
T cd02663 290 ---------------NQATAYVLFYQ 300 (300)
T ss_pred ---------------CCCceEEEEeC
Confidence 24699999995
No 6
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.8e-55 Score=498.49 Aligned_cols=286 Identities=32% Similarity=0.447 Sum_probs=245.9
Q ss_pred ecccCCcccchhhhhHHHhhhHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHhcC-CCcccchh-hhhhccCCccccc
Q 037461 200 GLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYS-DSSVATKE-LTKSFGWDTYDSF 277 (1077)
Q Consensus 200 GL~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~l~~~Lq~Lf~~l~~s-~~~v~~~~-l~~s~~~~~~~~~ 277 (1077)
||.|+||||||||+||+|+++|+||+++++.+... .....++..+|+.+|..|..+ ..++.|.. +..+...+.+..+
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~-~~~~~~~~~~L~~lf~~l~~~~~~~~~~~~~~l~~~~~~~f~~~ 79 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPR-LGDSQSVMKKLQLLQAHLMHTQRRAEAPPDYFLEASRPPWFTPG 79 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCccc-cCCcchHHHHHHHHHHHHhhcCCcccCCHHHHHHHhcccccCCC
Confidence 89999999999999999999999999999877532 223467889999999999875 44556655 6655555667888
Q ss_pred ccccHHHHHHHHHHHHHHHhcCCccccccccccceEEeeEEEeeeeeeecceeeeeeeeeeeecCCCCHHHHHhhccceE
Q 037461 278 MQHDVQELNRVLSEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVE 357 (1077)
Q Consensus 278 ~QqDa~Efl~~Lld~Le~e~~~~~~~~~i~~lF~G~~~~~i~C~~C~~~s~~~E~f~~L~L~v~~~~sL~esL~~~~~~E 357 (1077)
.||||+||+..||+.|+ +.|.++|+|++.+.++|.+|+..+.+.|+|.+|+|+|+ +|+++|+.|+.+|
T Consensus 80 ~QqDa~EFl~~lLd~l~---------~~i~~~F~G~~~~~i~C~~C~~~s~~~e~f~~l~L~i~---sl~~~l~~~~~~E 147 (327)
T cd02664 80 SQQDCSEYLRYLLDRLH---------TLIEKMFGGKLSTTIRCLNCNSTSARTERFRDLDLSFP---SVQDLLNYFLSPE 147 (327)
T ss_pred CcCCHHHHHHHHHHHHH---------HHHHhhCcEEeEeEEEcCCCCCEecccccceeeecCCC---CHHHHHHHhcCee
Confidence 99999999999999998 36889999999999999999999999999999999998 8999999999999
Q ss_pred EecCCCcccccccC-eeeceeeEEeccCCCeEEEEEeeEEEecccCeeeeccceEeeCcccccccccCCCCCCC------
Q 037461 358 RLEGDNKYHAEQYG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRENGKYLSPD------ 430 (1077)
Q Consensus 358 ~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vLiI~LkRF~~d~~~~~~~Ki~~~v~FP~~LdL~~~~~~yl~~~------ 430 (1077)
.++|+|+|.|+.|+ +++|.++..|.++|+||+|||+||.||..++...|+++.|.||..||| ..++...
T Consensus 148 ~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~ldl----~~~~~~~~~~~~~ 223 (327)
T cd02664 148 KLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSINEVLSL----PVRVESKSSESPL 223 (327)
T ss_pred EccCCCceeCCccCCccceeEEEEcccCChhhEEEeeeeEEccccCcceecCceEecCCEEec----Ccccccccccccc
Confidence 99999999999997 678999999999999999999999999988888999999999999999 5554210
Q ss_pred -----------cCcCCCccEEEEEEEEeeec-cCCceEEEEEEeCC--------------------CCCEEEEeCceeeE
Q 037461 431 -----------ADRSVRNLYTLHSVLVHSGG-VHGGHYYAFIRPTL--------------------SDQWYKFDDERVTK 478 (1077)
Q Consensus 431 -----------~~~~~~~~Y~L~gVVvH~Gs-~~~GHY~ayvr~~~--------------------~~~Wy~fnD~~Vt~ 478 (1077)
.....+..|+|+|||+|.|. +++|||+||+|... ++.||+|||+.|++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~Y~L~~Vi~H~G~~~~~GHY~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~ 303 (327)
T cd02664 224 EKKEEESGDDGELVTRQVHYRLYAVVVHSGYSSESGHYFTYARDQTDADSTGQECPEPKDAEENDESKNWYLFNDSRVTF 303 (327)
T ss_pred ccccccccccccccCCCceEEEEEEEEEccCCCCCcceEEEEecCCccccccccccccccccccCCCCCEEEEeCCceEE
Confidence 11124679999999999995 89999999999863 37999999999999
Q ss_pred ecHHHHHHHhcCCCCCCCCCCCCCCCCCccccCCCcEEEEEEE
Q 037461 479 EDLKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYI 521 (1077)
Q Consensus 479 vs~~evl~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~AYmLfY~ 521 (1077)
++.++|..-. |+. .+.+||||||+
T Consensus 304 ~~~~~v~~~~-~~~------------------~~~~aYlLfY~ 327 (327)
T cd02664 304 SSFESVQNVT-SRF------------------PKDTPYILFYE 327 (327)
T ss_pred CCHHHHHHhh-CCC------------------CCCCEEEEEeC
Confidence 9999997521 111 23699999995
No 7
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-55 Score=500.30 Aligned_cols=298 Identities=27% Similarity=0.469 Sum_probs=264.0
Q ss_pred cccCCccccceeecccCCcccchhhhhHHHhhhHHHHHHhccCCCCCCC-CCCCCHHHHHHHHHHHHhcCCC-cccchhh
Q 037461 188 WSYDSKKETGYVGLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTTEND-MPSGSIPLALQSLFYKLQYSDS-SVATKEL 265 (1077)
Q Consensus 188 ~~~dsk~~~g~vGL~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~-~~~~~l~~~Lq~Lf~~l~~s~~-~v~~~~l 265 (1077)
|.|+.-...| +||.|.|||||+||+||||.++|++.+++++......+ ....|+.|+++.+......+.+ +++|..+
T Consensus 99 ~~~~~~~~~~-~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~~~~C~lc~~q~hi~~A~~~~g~pisP~~i 177 (545)
T KOG1865|consen 99 LSSDRPAAVG-AGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCHRAKFCMLCTFQAHITRALHNPGHPISPSQI 177 (545)
T ss_pred ccccccccCC-cceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhccccCeeeehHHHHHHHHHhcCCCCccChHHH
Confidence 4666556666 89999999999999999999999999999864332222 2457999999999988777765 8999888
Q ss_pred hhhccC--CcccccccccHHHHHHHHHHHHHHHhcC--------CccccccccccceEEeeEEEeeeeeeecceeeeeee
Q 037461 266 TKSFGW--DTYDSFMQHDVQELNRVLSEKLEDKMKG--------TVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYD 335 (1077)
Q Consensus 266 ~~s~~~--~~~~~~~QqDa~Efl~~Lld~Le~e~~~--------~~~~~~i~~lF~G~~~~~i~C~~C~~~s~~~E~f~~ 335 (1077)
+..+.. ..|..+.|+|||||++.++|.|+..+-+ ....+.++++|+|.+++.++|.+|+++|.++|+.++
T Consensus 178 ~s~L~~I~~~f~~grQEDAHEFLr~~vd~mqk~cL~g~~~~~~~sq~ttlv~~iFGG~LrS~vkC~~C~~vS~tyE~~~d 257 (545)
T KOG1865|consen 178 LSNLRNISAHFGRGRQEDAHEFLRFTVDAMQKACLPGHKQVDPRSQDTTLVHQIFGGYLRSQIKCLHCKGVSDTYEPYLD 257 (545)
T ss_pred HHhhhhhcccccCCchhhHHHHHHHHHHHHHHhhcCCCccCCcccccceehhhhhccchhhceecccCCCcccccccccc
Confidence 876642 5678889999999999999999987721 224568899999999999999999999999999999
Q ss_pred eeeeecCCCCHHHHHhhccceEEecCCCcccccccC-eeeceeeEEeccCCCeEEEEEeeEEEecccCeeeeccceEeeC
Q 037461 336 LQLDVKGCRDVYASFDKYVEVERLEGDNKYHAEQYG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFP 414 (1077)
Q Consensus 336 L~L~v~~~~sL~esL~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vLiI~LkRF~~d~~~~~~~Ki~~~v~FP 414 (1077)
|+|+|....+|++||+.|+++|.|+|+|+|.|++|+ +.+|.|+..|.++|+||+||||||+. +...||+++|.||
T Consensus 258 ltvei~d~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LKRF~~----~~~gKI~K~I~fP 333 (545)
T KOG1865|consen 258 LTLEIQDASSLQQALEQFTKPEKLDGENAYHCGRCKQKVPASKQLTIHRAPNVLTLHLKRFSN----GTGGKISKPVSFP 333 (545)
T ss_pred eEEEeccchhHHHHHHHhhhHHhhCCccccccchhhhhCcccceeeeecCCceEEEeeehhcc----CcccccccccCCc
Confidence 999999999999999999999999999999999996 88999999999999999999999985 6778999999999
Q ss_pred cccccccccCCCCCCCcCcCCCccEEEEEEEEeee-ccCCceEEEEEEeCCCCCEEEEeCceeeEecHHHHHHHhcCCCC
Q 037461 415 LQLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSG-GVHGGHYYAFIRPTLSDQWYKFDDERVTKEDLKRALEEQYGGEE 493 (1077)
Q Consensus 415 ~~LdL~~~~~~yl~~~~~~~~~~~Y~L~gVVvH~G-s~~~GHY~ayvr~~~~~~Wy~fnD~~Vt~vs~~evl~~~~Gg~~ 493 (1077)
+.||| +||++.+. ..+.+|.|+|||||.| +..+|||+||||.. +|.||++||+.|+.++.+.|+.
T Consensus 334 E~LDl----~PyMS~~~--e~s~~Y~LYavlVH~g~~~~~GHY~cYvks~-~g~Wy~~DDS~V~~~~~~~VLs------- 399 (545)
T KOG1865|consen 334 ETLDL----QPYMSQPN--EGSTVYKLYAVLVHLGTSCHSGHYFCYVKSQ-NGQWYKMDDSEVTQSSIESVLS------- 399 (545)
T ss_pred ccccc----cccccCCC--CCCceEEEEEEEEeccccccCCceEEEEEcC-CCceEEccCceeeeccccceec-------
Confidence 99999 99999543 3578999999999999 68999999999997 8899999999999999999974
Q ss_pred CCCCCCCCCCCCCccccCCCcEEEEEEEec
Q 037461 494 ELPQTNPGFNNTPFKFTKYSNAYMLVYIRE 523 (1077)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~AYmLfY~R~ 523 (1077)
..||||||.|.
T Consensus 400 -------------------q~AYmLfY~R~ 410 (545)
T KOG1865|consen 400 -------------------QQAYILFYARK 410 (545)
T ss_pred -------------------ccceEEEEEee
Confidence 37999999998
No 8
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4e-54 Score=489.39 Aligned_cols=284 Identities=29% Similarity=0.523 Sum_probs=241.1
Q ss_pred CccccceeecccCCcccchhhhhHHHhhhHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHh---cC-CCcccchhhhh
Q 037461 192 SKKETGYVGLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQ---YS-DSSVATKELTK 267 (1077)
Q Consensus 192 sk~~~g~vGL~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~l~~~Lq~Lf~~l~---~s-~~~v~~~~l~~ 267 (1077)
.+..+|++||.|+||||||||+||+|+++|+||+.++++.. .......+|.+|..++ .+ ....+|..|+.
T Consensus 18 ~~~~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~------~~~~~~~~q~~~~~l~~~~~~~~~~~~P~~~~~ 91 (332)
T cd02671 18 RENLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVS------LISSVEQLQSSFLLNPEKYNDELANQAPRRLLN 91 (332)
T ss_pred cccCCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhc------ccCcHHHHHHHHHHHHHHHhhcccccCHHHHHH
Confidence 45678999999999999999999999999999999987652 1122345666665443 22 23456888998
Q ss_pred hccC--CcccccccccHHHHHHHHHHHHHHHhcCCccccccccccceEEeeEEEeeeeeeecceeeeeeeeeeeecCC--
Q 037461 268 SFGW--DTYDSFMQHDVQELNRVLSEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGC-- 343 (1077)
Q Consensus 268 s~~~--~~~~~~~QqDa~Efl~~Lld~Le~e~~~~~~~~~i~~lF~G~~~~~i~C~~C~~~s~~~E~f~~L~L~v~~~-- 343 (1077)
.+++ +.|..+.||||+||++.|||.|+. .+.++|+|++.+.++|.+|++.+.+.|+|++|+|+|++.
T Consensus 92 ~l~~~~~~f~~~~QQDA~EFl~~LLd~L~~---------~i~~~F~g~~~~~~~C~~C~~~s~~~E~f~~lsL~i~~~~~ 162 (332)
T cd02671 92 ALREVNPMYEGYLQHDAQEVLQCILGNIQE---------LVEKDFQGQLVLRTRCLECETFTERREDFQDISVPVQESEL 162 (332)
T ss_pred HHHHhccccCCccccCHHHHHHHHHHHHHH---------HHHhhhceEEEEEEEeCCCCCeeceecccEEEEEEeCCCcc
Confidence 8875 568889999999999999999984 578899999999999999999999999999999999864
Q ss_pred -----------------CCHHHHHhhccceEEecCCCcccccccC-eeeceeeEEeccCCCeEEEEEeeEEEeccc----
Q 037461 344 -----------------RDVYASFDKYVEVERLEGDNKYHAEQYG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMR---- 401 (1077)
Q Consensus 344 -----------------~sL~esL~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vLiI~LkRF~~d~~~---- 401 (1077)
.+|++||+.|+++|.++|+|+|.|+.|+ +++|.|+..|.++|+||+|||+||.++...
T Consensus 163 ~~~~~~~~~~~~~~~~~~tL~~~L~~f~~~E~l~g~n~y~C~~C~~~~~a~k~~~~~~~P~vL~i~LkRF~~~~~~~~~~ 242 (332)
T cd02671 163 SKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKLPEVITIHLKCFAANGSEFDCY 242 (332)
T ss_pred cccccccccccccccccCCHHHHHHHhCCcceecCCCCeeCCCCCCceeEEEEEEEecCCCEEEEEeeeecccccccccc
Confidence 4899999999999999999999999996 789999999999999999999999986432
Q ss_pred CeeeeccceEeeCcccccccccCCCCCCCcCcCCCccEEEEEEEEeee-ccCCceEEEEEEeCCCCCEEEEeCceeeEec
Q 037461 402 DTMVKINDRYEFPLQLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSG-GVHGGHYYAFIRPTLSDQWYKFDDERVTKED 480 (1077)
Q Consensus 402 ~~~~Ki~~~v~FP~~LdL~~~~~~yl~~~~~~~~~~~Y~L~gVVvH~G-s~~~GHY~ayvr~~~~~~Wy~fnD~~Vt~vs 480 (1077)
+...|++++|.||..||+ .++... .....|+|+|||+|.| +.++|||+|||| ||+|||+.|++++
T Consensus 243 ~~~~Ki~~~v~fp~~L~~----~~~~~~----~~~~~Y~L~~VI~H~G~~~~~GHY~a~vr------W~~fdD~~V~~~~ 308 (332)
T cd02671 243 GGLSKVNTPLLTPLKLSL----EEWSTK----PKNDVYRLFAVVMHSGATISSGHYTAYVR------WLLFDDSEVKVTE 308 (332)
T ss_pred CCceecCccccCcccccc----ccccCC----CCCCeEEEEEEEEEcCCCCCCCeEEEEEE------EEEEcCcceEEcc
Confidence 457899999999999999 555432 2467899999999999 589999999999 9999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCCCCccccCCCcEEEEEEE
Q 037461 481 LKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYI 521 (1077)
Q Consensus 481 ~~evl~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~AYmLfY~ 521 (1077)
++++++...|... ...+||||||.
T Consensus 309 ~~~~~~~~~~~~~-----------------~~~~aYiLfY~ 332 (332)
T cd02671 309 EKDFLEALSPNTS-----------------STSTPYLLFYK 332 (332)
T ss_pred HHHHHhhcCCCCC-----------------CCCceEEEEEC
Confidence 9999876544322 24699999994
No 9
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.3e-53 Score=476.43 Aligned_cols=288 Identities=28% Similarity=0.421 Sum_probs=248.6
Q ss_pred ecccCCcccchhhhhHHHhhhHHHHHHhccCCCCC--CCCCCCCHHHHHHHHHHHHhcCCCcccchhhhhhccC--Ccc-
Q 037461 200 GLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTTE--NDMPSGSIPLALQSLFYKLQYSDSSVATKELTKSFGW--DTY- 274 (1077)
Q Consensus 200 GL~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~--~~~~~~~l~~~Lq~Lf~~l~~s~~~v~~~~l~~s~~~--~~~- 274 (1077)
||.|+||||||||+||+|+++|+||+++++..... ......++.++|++||..|+.+..+++|.+|+..++. +.+
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~i~p~~~~~~l~~~~~~f~ 80 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTMDKKQEPVPPIEFLQLLRMAFPQFA 80 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhCCCcCCcHHHHHHHHHHCcCcc
Confidence 89999999999999999999999999998765421 1223468999999999999998889999999988752 333
Q ss_pred -----cccccccHHHHHHHHHHHHHHHhcC-CccccccccccceEEeeEEEeeeee-eecceeeeeeeeeeeecCC---C
Q 037461 275 -----DSFMQHDVQELNRVLSEKLEDKMKG-TVVEGTIQQLFEGHHMNYIECINVD-YKSTRKESFYDLQLDVKGC---R 344 (1077)
Q Consensus 275 -----~~~~QqDa~Efl~~Lld~Le~e~~~-~~~~~~i~~lF~G~~~~~i~C~~C~-~~s~~~E~f~~L~L~v~~~---~ 344 (1077)
..++||||+||+..||+.|++++++ ....+.|.++|+|++.+.++|.+|+ ..+.+.|+|++|+|+|++. .
T Consensus 81 ~~~~~~~~~QqDA~EFl~~lld~L~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~~~~~~e~f~~Lsl~i~~~~~~~ 160 (305)
T cd02657 81 EKQNQGGYAQQDAEECWSQLLSVLSQKLPGAGSKGSFIDQLFGIELETKMKCTESPDEEEVSTESEYKLQCHISITTEVN 160 (305)
T ss_pred cccCCCCccccCHHHHHHHHHHHHHHHhcccCCCCcHHHHhhceEEEEEEEcCCCCCCCccccccceEEEeecCCCcccc
Confidence 4558999999999999999999874 2345689999999999999999999 7999999999999999876 6
Q ss_pred CHHHHHhhccceEEecCCCcccccccC-eeeceeeEEeccCCCeEEEEEeeEEEecccCeeeeccceEeeCccccccccc
Q 037461 345 DVYASFDKYVEVERLEGDNKYHAEQYG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDREN 423 (1077)
Q Consensus 345 sL~esL~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vLiI~LkRF~~d~~~~~~~Ki~~~v~FP~~LdL~~~~ 423 (1077)
+|++||+.+++++.. ..|+.|+ ...+.|+..|.++|++|+|||+||.|+...+...|+++.|+||.+|||
T Consensus 161 ~l~~~L~~~~~~~~~-----~~~~~~~~~~~~~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl---- 231 (305)
T cd02657 161 YLQDGLKKGLEEEIE-----KHSPTLGRDAIYTKTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKFPFELDL---- 231 (305)
T ss_pred cHHHHHHHhhhhhhh-----hcCcccCCCceEEEEEEeccCCcEEEEEEECCccccccCceeecCcEEECCceEec----
Confidence 899999999986654 3577776 566789999999999999999999999887888999999999999999
Q ss_pred CCCCCCCcCcCCCccEEEEEEEEeee-ccCCceEEEEEEeCCCCCEEEEeCceeeEecHHHHHHHhcCCCCCCCCCCCCC
Q 037461 424 GKYLSPDADRSVRNLYTLHSVLVHSG-GVHGGHYYAFIRPTLSDQWYKFDDERVTKEDLKRALEEQYGGEEELPQTNPGF 502 (1077)
Q Consensus 424 ~~yl~~~~~~~~~~~Y~L~gVVvH~G-s~~~GHY~ayvr~~~~~~Wy~fnD~~Vt~vs~~evl~~~~Gg~~~~~~~~~~~ 502 (1077)
.+|+. .+..|+|+|||+|.| ++++|||+||+|...++.||+|||+.|++++.++|++. +||..
T Consensus 232 ~~~~~------~~~~Y~L~~vI~H~G~~~~~GHY~~~~~~~~~~~W~~fdD~~V~~~~~~~v~~~-~~~~~--------- 295 (305)
T cd02657 232 YELCT------PSGYYELVAVITHQGRSADSGHYVAWVRRKNDGKWIKFDDDKVSEVTEEDILKL-SGGGD--------- 295 (305)
T ss_pred ccccC------CCCcEEEEEEEEecCCCCCCcEEEEEEEcCCCCeEEEEECCceEEeCHHHHHhh-cCCCC---------
Confidence 67765 346899999999999 58999999999997569999999999999999998754 44421
Q ss_pred CCCCccccCCCcEEEEEEE
Q 037461 503 NNTPFKFTKYSNAYMLVYI 521 (1077)
Q Consensus 503 ~~~~~~~~~~~~AYmLfY~ 521 (1077)
+.+||||||+
T Consensus 296 ---------~~~aYiL~Y~ 305 (305)
T cd02657 296 ---------WHIAYILLYK 305 (305)
T ss_pred ---------CceEEEEEEC
Confidence 2589999995
No 10
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1e-52 Score=480.03 Aligned_cols=280 Identities=31% Similarity=0.495 Sum_probs=243.9
Q ss_pred eecccCCcccchhhhhHHHhhhHHHHHHhccCCCCC---CCCCCCCHHHHHHHHHHHHhcC--CCcccchhhhhhcc--C
Q 037461 199 VGLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTTE---NDMPSGSIPLALQSLFYKLQYS--DSSVATKELTKSFG--W 271 (1077)
Q Consensus 199 vGL~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~---~~~~~~~l~~~Lq~Lf~~l~~s--~~~v~~~~l~~s~~--~ 271 (1077)
+||.|+||||||||+||+|+++|+||++++...... ...+..++.++|++||..|+.+ ...++|..++.++. .
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~~~ 80 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYYSGDRSPYGPINLLYLSWKHS 80 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCccccccccCCccccHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhc
Confidence 599999999999999999999999999998754221 2345578999999999999554 35678888888773 2
Q ss_pred CcccccccccHHHHHHHHHHHHHHHhcCCc--------cccccccccceEEeeEEEeeeeeeecceeeeeeeeeeeecCC
Q 037461 272 DTYDSFMQHDVQELNRVLSEKLEDKMKGTV--------VEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGC 343 (1077)
Q Consensus 272 ~~~~~~~QqDa~Efl~~Lld~Le~e~~~~~--------~~~~i~~lF~G~~~~~i~C~~C~~~s~~~E~f~~L~L~v~~~ 343 (1077)
+.+..+.||||+||+..||+.|++++.... ..++|.++|+|++.+.++|..|++.+.+.|+|++|+|+++..
T Consensus 81 ~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~ 160 (328)
T cd02660 81 RNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEANDESHCNCIIHQTFSGSLQSSVTCQRCGGVSTTVDPFLDLSLDIPNK 160 (328)
T ss_pred hhhcccccccHHHHHHHHHHHHHHHhhcccccccccccCCceeEEecccEEEeeeEcCCCCCccceecccceeeeecccc
Confidence 357788999999999999999999886542 235789999999999999999999999999999999999865
Q ss_pred ---------------CCHHHHHhhccceEEecCCCcccccccC-eeeceeeEEeccCCCeEEEEEeeEEEecccCeeeec
Q 037461 344 ---------------RDVYASFDKYVEVERLEGDNKYHAEQYG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKI 407 (1077)
Q Consensus 344 ---------------~sL~esL~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vLiI~LkRF~~d~~~~~~~Ki 407 (1077)
.+|++||+.|+.+|.+++.| |.|+.|+ ++++.++..|.++|++|+|||+||.|+.. +...|+
T Consensus 161 ~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~~~~~~-~~C~~C~~~~~~~~~~~i~~lP~~Lii~lkRf~~~~~-~~~~K~ 238 (328)
T cd02660 161 STPSWALGESGVSGTPTLSDCLDRFTRPEKLGDFA-YKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHSLN-KTSRKI 238 (328)
T ss_pred ccccccccccCCCCCCCHHHHHHHhcCccccCCCC-ccCCCCCCccceEEEEEecCCCceeEEEEEeEEecCC-CCCcCC
Confidence 79999999999999999888 9999998 56899999999999999999999999865 566899
Q ss_pred cceEeeCcccccccccCCCCCCC-------cCcCCCccEEEEEEEEeeeccCCceEEEEEEeCCCCCEEEEeCceeeEec
Q 037461 408 NDRYEFPLQLDLDRENGKYLSPD-------ADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKED 480 (1077)
Q Consensus 408 ~~~v~FP~~LdL~~~~~~yl~~~-------~~~~~~~~Y~L~gVVvH~Gs~~~GHY~ayvr~~~~~~Wy~fnD~~Vt~vs 480 (1077)
++.|.||.+||| .+|+..+ ........|+|+|||+|+|+.++|||+||+|.. +++||+|||+.|++++
T Consensus 239 ~~~v~fp~~Ldl----~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~~~~~~~-~~~W~~~nD~~V~~~~ 313 (328)
T cd02660 239 DTYVQFPLELNM----TPYTSSSIGDTQDSNSLDPDYTYDLFAVVVHKGTLDTGHYTAYCRQG-DGQWFKFDDAMITRVS 313 (328)
T ss_pred CcEEeCCCEech----hhhcccccccccccccCCCCceEEEEEEEEeeccCCCCcEEEEEECC-CCcEEEEECCeeEECC
Confidence 999999999999 7777641 223456899999999999998999999999996 5999999999999999
Q ss_pred HHHHH
Q 037461 481 LKRAL 485 (1077)
Q Consensus 481 ~~evl 485 (1077)
.++|+
T Consensus 314 ~~~v~ 318 (328)
T cd02660 314 EEEVL 318 (328)
T ss_pred HHHhc
Confidence 99985
No 11
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=100.00 E-value=7.2e-53 Score=448.56 Aligned_cols=204 Identities=47% Similarity=0.800 Sum_probs=145.1
Q ss_pred ceeeEEEeccChhhhcccceEEEEEEcCCCCeEEEEEEEcCCCCCHHHHHHHHhhccccCCC-CccEEEEEEeccEEEEe
Q 037461 843 DVLYYEVLDIPLPELQCLKTLKVAFHHATKDEVSVHTIRLPKQSTVGDVINDLKTKVELSQP-DAELRLLEVFYHKIYKI 921 (1077)
Q Consensus 843 ~~l~YevL~i~l~elE~~k~~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~~~~~-~~~lRl~ev~~~ki~~~ 921 (1077)
+.||||+|+|||+|||+||++||+|+++++.++++++++|||+|||+||+++++++++++++ +++||||++++|||+++
T Consensus 1 ~~l~YevL~i~l~ElE~kk~~kv~w~~~~~~~~~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~ 80 (213)
T PF14533_consen 1 DTLYYEVLDIPLKELENKKQFKVTWLNDGLKEEQEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKI 80 (213)
T ss_dssp -EEEEEE-SS-HHHHHSB--EEEEEE-TTS-EE-EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEE
T ss_pred CceEEEecCCCHHHHhCceEEEEEEECCCCcceeEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEee
Confidence 47899999999999999999999999999999999999999999999999999999999885 68999999999999999
Q ss_pred cCCcccccccccccceEEeeecchhhhcCC-C--CCeEEEEEEeeccCccccccccccCcceEEEeccCCcHHHHHHHHH
Q 037461 922 FPLNEKIENINDQYWTLRAEEIPEEEKNLG-P--HDRLIHVYHFTKETAQNQMQIQNFGEPFFLVIHEGETLQEIKVRIQ 998 (1077)
Q Consensus 922 ~~~~~~i~~i~~~~~~~~~E~iP~~e~~~~-~--~~~~i~v~hf~k~~~~~h~~~~~fGiPF~~~i~~~E~~~~~k~ri~ 998 (1077)
|+++++|++|++ +..||||+||+||.++. + ++++|+|+||+|++++.| ||||+|+|+|||+|++||+|||
T Consensus 81 ~~~d~~i~~l~~-~~~~r~E~ip~ee~~~~~~~~~~~li~V~hf~k~~~~~h------GiPF~f~v~~gE~f~~tK~Rl~ 153 (213)
T PF14533_consen 81 LSEDEPISSLND-YITLRIEEIPEEELNLDDESEGEKLIPVFHFHKDPSRTH------GIPFLFVVKPGETFSDTKERLQ 153 (213)
T ss_dssp E-TTSBGGGS---TTEEEEEE--GGGSS--TT--TEEEEEEEEESSSTT-EE------EEEEEEEEETT--HHHHHHHHH
T ss_pred cCCCCchhhccC-cceeeeecCChHHhhcccccccceEEEEEEEecCccccC------CCCEEEEeeCCCcHHHHHHHHH
Confidence 999999999976 44899999999999987 5 789999999999999777 9999999999999999999999
Q ss_pred HHhCCCcccccceEEEEEecCC---CcccCCcc--cccccccccccCCccceeeeeeCCCCCCcc
Q 037461 999 RKLQVPDEEFAKWKFAFLSLGR---PEYLQDTD--IVSSRFQRRDVYGAWEQYLGLEHSDSAPKR 1058 (1077)
Q Consensus 999 ~~~~~~~~~f~k~k~a~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~lgldh~~~~~~~ 1058 (1077)
+||||++|||+|||||||..++ |+|++|++ ++++.....+ ++||||||+||+|||
T Consensus 154 ~rlgv~~keF~K~Kfaiv~~~~~~~~~yl~d~~~~il~~~~~~~~-----~~~LgLdH~dk~~kr 213 (213)
T PF14533_consen 154 KRLGVSDKEFEKWKFAIVQNSRYSKPRYLEDDDDLILFDEIFNPD-----DPWLGLDHPDKSPKR 213 (213)
T ss_dssp HHH---HHHHTT-EEEEEETTEE---EE--TT-T----GGGTS-S-------EEEEE--------
T ss_pred HHhCCChhhheeEEEEEEecCCcccceeccccchhhhhhhhcCcc-----CCEEEEeCCCCCCCC
Confidence 9999999999999999997654 69999986 7777765333 459999999999986
No 12
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-53 Score=479.89 Aligned_cols=318 Identities=35% Similarity=0.598 Sum_probs=280.1
Q ss_pred ccccceeecccCCcccchhhhhHHHhhhHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccchhhhhhccCC
Q 037461 193 KKETGYVGLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDSSVATKELTKSFGWD 272 (1077)
Q Consensus 193 k~~~g~vGL~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~l~~~Lq~Lf~~l~~s~~~v~~~~l~~s~~~~ 272 (1077)
-...|||||.|+..|||+|+.+|+|+..|.||+.+|-.+ +.++.+++|+++|||.
T Consensus 82 ~~~~~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts~-------------------------~~~~et~dlt~sfgw~ 136 (1203)
T KOG4598|consen 82 ENGHRYVGLVNQASNDLLFEQSCAISLHDSGISKCYTSE-------------------------NDSLETKDLTQSFGWT 136 (1203)
T ss_pred cCCcceEeehhhHHHHHHHHHhhhhccChhhhhhhhCCC-------------------------cccccchhhHhhcCCC
Confidence 345689999999999999999999999999999998322 2346788999999999
Q ss_pred cccccccccHHHHHHHHHHHHHHHhcCCccccccccccceEEeeEEEeeeeeeecceeeeeeeeeeeecCC------CCH
Q 037461 273 TYDSFMQHDVQELNRVLSEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGC------RDV 346 (1077)
Q Consensus 273 ~~~~~~QqDa~Efl~~Lld~Le~e~~~~~~~~~i~~lF~G~~~~~i~C~~C~~~s~~~E~f~~L~L~v~~~------~sL 346 (1077)
+.+.+.|||+||++++++|.||.+.+++.....|++|+.|+|..++.|..|+.++.+.+.|++|+|+|+.. .++
T Consensus 137 s~ea~~qhdiqelcr~mfdalehk~k~t~~~~li~~ly~g~m~d~v~cl~c~~e~~~~d~fld~pl~v~pfg~~~ay~si 216 (1203)
T KOG4598|consen 137 SNEAYDQHDVQELCRLMFDALEHKWKGTEHEKLIQDLYRGTMEDFVACLKCGRESVKTDYFLDLPLAVKPFGAIHAYKSV 216 (1203)
T ss_pred cchhhhhhhHHHHHHHHHHHHHhhhcCchHHHHHHHHhcchHHHHHHHHHcCccccccceeecccccccCCcchhhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999743 479
Q ss_pred HHHHhhccceEEecCCCcccccccC-eeeceeeEEeccCCCeEEEEEeeEEEecccCeeeeccceEeeCcccccccccCC
Q 037461 347 YASFDKYVEVERLEGDNKYHAEQYG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRENGK 425 (1077)
Q Consensus 347 ~esL~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vLiI~LkRF~~d~~~~~~~Ki~~~v~FP~~LdL~~~~~~ 425 (1077)
+++|..|++||.|+|.|+|-|++|+ +++|.|+..|.+||-+|.||||||.||+++...+|+|+++.||..|||+.|
T Consensus 217 eeal~afvqpe~ldg~nqy~ce~ck~k~dahkgl~~~~fpy~lt~~lkrfdfdy~tmhriklnd~~tfp~~l~ln~~--- 293 (1203)
T KOG4598|consen 217 EEALTAFVQPELLDGSNQYMCENCKSKQDAHKGLRITQFPYLLTIQLKRFDFDYNTMHRIKLNDKMTFPDVLDLNDY--- 293 (1203)
T ss_pred HHHHHHhcChhhcCCccHHHHhhhhhhhhhhcCceeeccceeeEEeeecccccchheeeeeecccccCcccccHHHh---
Confidence 9999999999999999999999996 899999999999999999999999999999999999999999999999632
Q ss_pred CCCCC----------------------------------------------------------------cCcCCCccEEE
Q 037461 426 YLSPD----------------------------------------------------------------ADRSVRNLYTL 441 (1077)
Q Consensus 426 yl~~~----------------------------------------------------------------~~~~~~~~Y~L 441 (1077)
+..+ ...+++..|+|
T Consensus 294 -in~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~n~~~g~~~~~~~~~~~~~~sg~~~yel 372 (1203)
T KOG4598|consen 294 -VNKEKRSTTSSAWQQIGKNKSENEEDDMELGSPNPKRCTPGVQSPNRYQGSENVCVGQPIDHAAVDDIVKTSGDNVYEL 372 (1203)
T ss_pred -hhhccCCcchhHhhhcccccccccccccccCCCCcccCcccccCcccccCccccccCCcCchhhhhhHhhcCCccHHHh
Confidence 1100 01246789999
Q ss_pred EEEEEeeeccCCceEEEEEEeCCCCCEEEEeCceeeEecHHHHHHHhcCCCCCCCCCCCCCCCCCccccCCCcEEEEEEE
Q 037461 442 HSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDLKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYI 521 (1077)
Q Consensus 442 ~gVVvH~Gs~~~GHY~ayvr~~~~~~Wy~fnD~~Vt~vs~~evl~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~AYmLfY~ 521 (1077)
+||.+|+|++.+|||+||||+..++.||.|||.+|+-++..++ +..|||... ++. ..+++||||+|+
T Consensus 373 f~imihsg~a~gghy~ayik~~d~~~w~~fnd~~v~~~t~~~i-~~sfgg~~~------~~~------~s~tnaymlmyr 439 (1203)
T KOG4598|consen 373 FSVMVHSGNAAGGHYFAYIKNLDQDRWYVFNDTRVDFATPLEI-EKSFGGHPS------GWN------QSNTNAYMLMYR 439 (1203)
T ss_pred hhhheecCCCCCceeeeeecccCcCceEEecCccccccCHHHH-HHhhCCCCC------Ccc------ccCcchhhhhhh
Confidence 9999999999999999999999899999999999999998876 778999753 222 336899999999
Q ss_pred eccCccccccCCChhhhHHHHHHHHHHHHHHH
Q 037461 522 RESDKDKIICNVDEQDIAEHLRERLKKEQEEK 553 (1077)
Q Consensus 522 R~~~~~~i~~~v~~~~ip~~l~~~~~~e~~~~ 553 (1077)
|.+...+-+. +...+.|+|++..+.+-..++
T Consensus 440 ~id~krn~~~-~~~~~~p~hik~~~~k~~~~e 470 (1203)
T KOG4598|consen 440 RIDPKRNARF-ILSNQLPQHIKDSQEKWKRLE 470 (1203)
T ss_pred hcCcccccce-eecccchHHHHHHHHHHHHHH
Confidence 9997765432 456899999998776554333
No 13
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.5e-52 Score=466.01 Aligned_cols=241 Identities=32% Similarity=0.538 Sum_probs=210.6
Q ss_pred ecccCCcccchhhhhHHHhhhHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccchhhhhhccCCccccccc
Q 037461 200 GLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDSSVATKELTKSFGWDTYDSFMQ 279 (1077)
Q Consensus 200 GL~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~l~~~Lq~Lf~~l~~s~~~v~~~~l~~s~~~~~~~~~~Q 279 (1077)
||.|+||||||||+||+|+++|+||+++++ ..+.++..+... .+.+..+.|
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~---------------~P~~~~~~l~~~--------------~~~f~~~~Q 51 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE---------------TPKELFSQVCRK--------------APQFKGYQQ 51 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH---------------CHHHHHHHHHHh--------------hHhhcCCch
Confidence 899999999999999999999999999986 112233322211 134667899
Q ss_pred ccHHHHHHHHHHHHHHHhcCCccccccccccceEEeeEEEeeeeeeecceeeeeeeeeeeec----CCCCHHHHHhhccc
Q 037461 280 HDVQELNRVLSEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVK----GCRDVYASFDKYVE 355 (1077)
Q Consensus 280 qDa~Efl~~Lld~Le~e~~~~~~~~~i~~lF~G~~~~~i~C~~C~~~s~~~E~f~~L~L~v~----~~~sL~esL~~~~~ 355 (1077)
|||+||+..||+.|+ +.+.++|.|++.+.+.|.+|++.+.+.|+|++|+|+++ ...+|++||+.|++
T Consensus 52 qDA~Efl~~lld~l~---------~~i~~~F~G~~~~~i~C~~C~~~s~~~E~f~~L~Lp~~~~~~~~~sL~~~L~~~~~ 122 (279)
T cd02667 52 QDSHELLRYLLDGLR---------TFIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDEIKSECSIESCLKQFTE 122 (279)
T ss_pred hhHHHHHHHHHHHHH---------HhhhhhcceEEEEEEEcCCCCCEeCccccceEEecCCCcccCCCCCHHHHHHhhcC
Confidence 999999999999998 46889999999999999999999999999999999875 34689999999999
Q ss_pred eEEecCCCcccccccCeeeceeeEEeccCCCeEEEEEeeEEEecccCeeeeccceEeeCcccccccccCCCCCCC---cC
Q 037461 356 VERLEGDNKYHAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRENGKYLSPD---AD 432 (1077)
Q Consensus 356 ~E~l~g~n~y~C~~c~~~~a~k~~~i~~lP~vLiI~LkRF~~d~~~~~~~Ki~~~v~FP~~LdL~~~~~~yl~~~---~~ 432 (1077)
+|.++|+|+|.|+.|++ |.++..|.++|++|+|||+||.|+... ...|++++|.||..||| ++|+..+ ..
T Consensus 123 ~E~l~~~~~~~C~~C~~--a~k~~~i~~~P~~Lii~LkRF~~~~~~-~~~Ki~~~v~fP~~Ldl----~~~~~~~~~~~~ 195 (279)
T cd02667 123 VEILEGNNKFACENCTK--AKKQYLISKLPPVLVIHLKRFQQPRSA-NLRKVSRHVSFPEILDL----APFCDPKCNSSE 195 (279)
T ss_pred eeEecCCCcccCCccCc--eeeEeEhhhCCCeEEEEEeccccCccc-CceecCceEeCCCccch----hhccCccccccc
Confidence 99999999999999987 899999999999999999999998653 57899999999999999 7887762 23
Q ss_pred cCCCccEEEEEEEEeeeccCCceEEEEEEeCC---------------------CCCEEEEeCceeeEecHHHHH
Q 037461 433 RSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTL---------------------SDQWYKFDDERVTKEDLKRAL 485 (1077)
Q Consensus 433 ~~~~~~Y~L~gVVvH~Gs~~~GHY~ayvr~~~---------------------~~~Wy~fnD~~Vt~vs~~evl 485 (1077)
......|+|+|||+|.|+.++|||+||+|... ++.||+|||+.|++++.++|+
T Consensus 196 ~~~~~~Y~L~~vi~H~G~~~~GHY~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~dD~~V~~v~~~~v~ 269 (279)
T cd02667 196 DKSSVLYRLYGVVEHSGTMRSGHYVAYVKVRPPQQRLSDLTKSKPAADEAGPGSGQWYYISDSDVREVSLEEVL 269 (279)
T ss_pred cCCCceEEEEEEEEEeCCCCCCEeEEEEEcCccccccccccccccccccCCCCCCcEEEEECCccEECCHHHhc
Confidence 34568999999999999889999999999854 689999999999999999985
No 14
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.6e-50 Score=454.39 Aligned_cols=276 Identities=29% Similarity=0.482 Sum_probs=241.6
Q ss_pred eecccCCcccchhhhhHHHhhhHHHHHHhccCCCCC-CCCCCCCHHHHHHHHHHHHhcC-CCcccchhhhhhcc--CCcc
Q 037461 199 VGLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTTE-NDMPSGSIPLALQSLFYKLQYS-DSSVATKELTKSFG--WDTY 274 (1077)
Q Consensus 199 vGL~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~-~~~~~~~l~~~Lq~Lf~~l~~s-~~~v~~~~l~~s~~--~~~~ 274 (1077)
+||.|.||||||||+||+|+++|+||+++++..... ...+..++.++|+++|..+..+ ...+.|..|..+++ ++.+
T Consensus 2 ~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~f 81 (304)
T cd02661 2 AGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCALEAHVERALASSGPGSAPRIFSSNLKQISKHF 81 (304)
T ss_pred CCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhccCCcchHHHHHHHHHHHHHhCCCCccChHHHHHHHHHHHHhh
Confidence 799999999999999999999999999998644322 2334468999999999998865 45677877776664 4568
Q ss_pred cccccccHHHHHHHHHHHHHHHhcCCc-----------cccccccccceEEeeEEEeeeeeeecceeeeeeeeeeeecCC
Q 037461 275 DSFMQHDVQELNRVLSEKLEDKMKGTV-----------VEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGC 343 (1077)
Q Consensus 275 ~~~~QqDa~Efl~~Lld~Le~e~~~~~-----------~~~~i~~lF~G~~~~~i~C~~C~~~s~~~E~f~~L~L~v~~~ 343 (1077)
..+.||||+||+..|++.|++++.... ..+.+.++|+|++.+.+.|.+|+..+.+.++|+.|+|++++.
T Consensus 82 ~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~~~~l~l~i~~~ 161 (304)
T cd02661 82 RIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAVDPSSQETTLVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLDIKGA 161 (304)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHhhhcccccccCccccCCChhhhcCCcEEeeeEEeCCCCCCcCccccceeeeeecCCC
Confidence 888999999999999999998764322 245788999999999999999999999999999999999999
Q ss_pred CCHHHHHhhccceEEecCCCcccccccC-eeeceeeEEeccCCCeEEEEEeeEEEecccCeeeeccceEeeCcccccccc
Q 037461 344 RDVYASFDKYVEVERLEGDNKYHAEQYG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRE 422 (1077)
Q Consensus 344 ~sL~esL~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vLiI~LkRF~~d~~~~~~~Ki~~~v~FP~~LdL~~~ 422 (1077)
.+|+++|+.++.+|.++|+++|.|+.|+ ++.+.++..|.++|++|+|||+||.++ ...|+++.|.||.+|||
T Consensus 162 ~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~iL~i~l~Rf~~~----~~~Ki~~~v~f~~~L~l--- 234 (304)
T cd02661 162 DSLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNF----RGGKINKQISFPETLDL--- 234 (304)
T ss_pred CcHHHHHHHhcCceeeCCCCCeeCCCCCCccceEEEEEEecCCcEEEEEEeccccC----CccccCCeEecCCeech---
Confidence 9999999999999999999999999998 567889999999999999999999987 45799999999999999
Q ss_pred cCCCCCCCcCcCCCccEEEEEEEEeeecc-CCceEEEEEEeCCCCCEEEEeCceeeEecHHHHH
Q 037461 423 NGKYLSPDADRSVRNLYTLHSVLVHSGGV-HGGHYYAFIRPTLSDQWYKFDDERVTKEDLKRAL 485 (1077)
Q Consensus 423 ~~~yl~~~~~~~~~~~Y~L~gVVvH~Gs~-~~GHY~ayvr~~~~~~Wy~fnD~~Vt~vs~~evl 485 (1077)
.+|+... ......|+|+|||+|.|+. ++|||+||+|.. +++||+|||+.|+++++++|+
T Consensus 235 -~~~~~~~--~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~-~~~W~~~nD~~V~~v~~~~v~ 294 (304)
T cd02661 235 -SPYMSQP--NDGPLKYKLYAVLVHSGFSPHSGHYYCYVKSS-NGKWYNMDDSKVSPVSIETVL 294 (304)
T ss_pred -hhccccC--CCCCceeeEEEEEEECCCCCCCcCCEEEEECC-CCCEEEEeCCeeEECCHHHhc
Confidence 7777653 2356789999999999964 999999999985 789999999999999999985
No 15
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-52 Score=473.53 Aligned_cols=328 Identities=34% Similarity=0.570 Sum_probs=283.0
Q ss_pred ccCCccccceeecccCCcccchhhhhHHHhhhHHHHHHhccCCCCCCCCCCCC----HHHHHHHHHHHHhcCC-Ccccch
Q 037461 189 SYDSKKETGYVGLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTTENDMPSGS----IPLALQSLFYKLQYSD-SSVATK 263 (1077)
Q Consensus 189 ~~dsk~~~g~vGL~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~----l~~~Lq~Lf~~l~~s~-~~v~~~ 263 (1077)
+-.++...|+|||+|-|+|||||+++|-|+++|.+|..+..+... .+.+.-+ +.+.||++|.+|..+. +++-|.
T Consensus 86 pVgsRpp~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~-td~pd~s~~e~vl~~lQ~iF~hL~~s~lQyyVPe 164 (944)
T KOG1866|consen 86 PVGSRPPEGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGT-TDLPDMSGDEKVLRHLQVIFGHLAASQLQYYVPE 164 (944)
T ss_pred CcCCCCCcceeeecCCCchHHHhhhhhhhhhcccccchhhhhccc-ccchhhcchHHHHHHHHHHHHHHHHHhhhhhcch
Confidence 344678889999999999999999999999999999887655432 2223333 9999999999999875 678899
Q ss_pred hhhhhcc-C-CcccccccccHHHHHHHHHHHHHHHhcCCccccccccccceEEeeEEEeeeeeeecceeeeeeeeeeeec
Q 037461 264 ELTKSFG-W-DTYDSFMQHDVQELNRVLSEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVK 341 (1077)
Q Consensus 264 ~l~~s~~-~-~~~~~~~QqDa~Efl~~Lld~Le~e~~~~~~~~~i~~lF~G~~~~~i~C~~C~~~s~~~E~f~~L~L~v~ 341 (1077)
.|.+.|. | .....-+||||-||+..|+|.+++.+|.-.....++..|+|.....-.|..|.+.-+..|+|..|+|.|.
T Consensus 165 g~Wk~Fr~~~~pln~reqhDA~eFf~sLld~~De~LKklg~p~lf~n~f~G~ysdqKIC~~CpHRY~~eE~F~~l~l~i~ 244 (944)
T KOG1866|consen 165 GFWKQFRLWGEPLNLREQHDALEFFNSLLDSLDEALKKLGHPQLFSNTFGGSYSDQKICQGCPHRYECEESFTTLNLDIR 244 (944)
T ss_pred hHHHHhhccCCccchHhhhhHHHHHHHHHHHHHHHHHHhCCcHHHHHHhcCccchhhhhccCCcccCccccceeeeeecc
Confidence 9999886 3 3456678999999999999999999998888888999999999999999999999899999999999999
Q ss_pred CCCCHHHHHhhccceEEecCCCcccccccC-eeeceeeEEeccCCCeEEEEEeeEEEecccCeeeeccceEeeCcccccc
Q 037461 342 GCRDVYASFDKYVEVERLEGDNKYHAEQYG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLD 420 (1077)
Q Consensus 342 ~~~sL~esL~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vLiI~LkRF~~d~~~~~~~Ki~~~v~FP~~LdL~ 420 (1077)
..+|+++|++|++.|+|+|.|+|+|++|. +....|++.|++||++|.||||||.||..++..+|.|+.++||-+|||
T Consensus 245 -~~nLeesLeqfv~gevlEG~nAYhCeKCdeK~~TvkRt~ik~LPsvl~IqLkRF~yD~e~~~~iK~n~~frFP~~ldM- 322 (944)
T KOG1866|consen 245 -HQNLEESLEQFVKGEVLEGANAYHCEKCDEKVDTVKRTCIKKLPSVLAIQLKRFDYDWERECAIKFNDYFRFPRELDM- 322 (944)
T ss_pred -cchHHHHHHHHHHHHHhcCcchhhhhhhhhhhHhHHHHHHhhCChhheehhhhccchhhhccccccchhcccchhhcC-
Confidence 89999999999999999999999999996 678899999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCc---------------CcCCCccEEEEEEEEeeeccCCceEEEEEEeCC---CCCEEEEeCceeeEecHH
Q 037461 421 RENGKYLSPDA---------------DRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTL---SDQWYKFDDERVTKEDLK 482 (1077)
Q Consensus 421 ~~~~~yl~~~~---------------~~~~~~~Y~L~gVVvH~Gs~~~GHY~ayvr~~~---~~~Wy~fnD~~Vt~vs~~ 482 (1077)
.||..... ....+.+|+|+|||||+|.+++||||+||+... +++||+|||..|++++..
T Consensus 323 ---ePYtvsg~a~~e~~~~~~g~~~e~s~~t~~YeLvGVlvHSGqAsaGHYySfIk~rr~~~~~kWykfnD~~Vte~~~n 399 (944)
T KOG1866|consen 323 ---EPYTVSGVAKLEGENVESGQQLEQSAGTTKYELVGVLVHSGQASAGHYYSFIKQRRGEDGNKWYKFNDGDVTECKMN 399 (944)
T ss_pred ---CceeehhhhhhccccCCcCcccccccCcceeEEEEEEEecccccCcchhhhhhhhccCCCCceEeccCccccccchh
Confidence 56653221 123567999999999999999999999999653 469999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCCCCCCCccccCCCcEEEEEEEeccCccc
Q 037461 483 RALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRESDKDK 528 (1077)
Q Consensus 483 evl~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~AYmLfY~R~~~~~~ 528 (1077)
++-.+||||+... .++..+ . .+|+.|||||||+|.+..+.
T Consensus 400 ~me~~cfGGey~q--~~~~~~---~-rrR~WNAYmlFYer~~d~p~ 439 (944)
T KOG1866|consen 400 EMENECFGGEYMQ--MMKRMS---Y-RRRWWNAYMLFYERMDDIPT 439 (944)
T ss_pred hHHHHhhcchhhh--cccccc---h-HHHhhhhHHHHHHHhcCCCc
Confidence 9999999998541 111111 1 23789999999999986543
No 16
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.2e-49 Score=449.25 Aligned_cols=273 Identities=25% Similarity=0.350 Sum_probs=233.5
Q ss_pred ecccCCcccchhhhhHHHhhhHHHHHHhccCCC---CCCCCCCCCHHHHHHHHHHHHhcC---------------CCccc
Q 037461 200 GLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPT---TENDMPSGSIPLALQSLFYKLQYS---------------DSSVA 261 (1077)
Q Consensus 200 GL~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~~~---~~~~~~~~~l~~~Lq~Lf~~l~~s---------------~~~v~ 261 (1077)
||.|+||||||||+||+|+++|+||++++.... .....+..++.++|++||..|+.. ..+++
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~i~ 80 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVGIK 80 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccCCCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccccC
Confidence 899999999999999999999999999975321 122335678999999999999763 23588
Q ss_pred chhhhhhccC--CcccccccccHHHHHHHHHHHHHHHhcCCccccccccccceEEeeEEEeeeeeeecceeeeeeeeeee
Q 037461 262 TKELTKSFGW--DTYDSFMQHDVQELNRVLSEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLD 339 (1077)
Q Consensus 262 ~~~l~~s~~~--~~~~~~~QqDa~Efl~~Lld~Le~e~~~~~~~~~i~~lF~G~~~~~i~C~~C~~~s~~~E~f~~L~L~ 339 (1077)
|..|...+++ +.|..+.||||+||++.||+.|+++++.. ....+.++|+|.+.+.++|.+|+..+.+.|+|.+|+|+
T Consensus 81 p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~-~~~~~~~~f~~~~~~~i~C~~C~~~s~~~e~~~~lsL~ 159 (311)
T cd02658 81 PSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRESFKN-LGLNPNDLFKFMIEDRLECLSCKKVKYTSELSEILSLP 159 (311)
T ss_pred cHHHHHHHhccChhhcccccccHHHHHHHHHHHHHHhhccc-ccCCchhheEEEeeEEEEcCCCCCEEEeecceeEEeee
Confidence 9999998864 67888999999999999999999998642 23457899999999999999999989999999999999
Q ss_pred ecCCC--------------CHHHHHhhccceEEecCCCcccccccC-eeeceeeEEeccCCCeEEEEEeeEEEecccCee
Q 037461 340 VKGCR--------------DVYASFDKYVEVERLEGDNKYHAEQYG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTM 404 (1077)
Q Consensus 340 v~~~~--------------sL~esL~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vLiI~LkRF~~d~~~~~~ 404 (1077)
++... +|+++|+.|+.+|.++ +.|+.|+ ++.|.++..|.++|++|+|||+||.++. ....
T Consensus 160 l~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~i~----~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~-~~~~ 234 (311)
T cd02658 160 VPKDEATEKEEGELVYEPVPLEDCLKAYFAPETIE----DFCSTCKEKTTATKTTGFKTFPDYLVINMKRFQLLE-NWVP 234 (311)
T ss_pred cccccccccccccccCCCCCHHHHHHHHcCccccc----ccccCCCCcccEEEEEEeecCCceEEEEeEEEEecC-CCce
Confidence 87543 8999999999999997 5687787 6789999999999999999999999963 3457
Q ss_pred eeccceEeeCcccccccccCCCCCCCcCcCCCccEEEEEEEEeeec-cCCceEEEEEEeC--CCCCEEEEeCceeeEecH
Q 037461 405 VKINDRYEFPLQLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGG-VHGGHYYAFIRPT--LSDQWYKFDDERVTKEDL 481 (1077)
Q Consensus 405 ~Ki~~~v~FP~~LdL~~~~~~yl~~~~~~~~~~~Y~L~gVVvH~Gs-~~~GHY~ayvr~~--~~~~Wy~fnD~~Vt~vs~ 481 (1077)
.|++..|.||..|. +..|+|+|||+|.|+ .++|||+||+|.. .+++||+|||+.|++++.
T Consensus 235 ~Ki~~~v~~p~~l~-----------------~~~Y~L~~vI~H~G~~~~~GHY~~~vk~~~~~~~~W~~fnD~~V~~~~~ 297 (311)
T cd02658 235 KKLDVPIDVPEELG-----------------PGKYELIAFISHKGTSVHSGHYVAHIKKEIDGEGKWVLFNDEKVVASQD 297 (311)
T ss_pred EeeccccccCCcCC-----------------CCcEEEEEEEEccCCCCCCcceEEEEeCCCCCCCCEEEecCceeEECCc
Confidence 89999999997661 346999999999995 8999999999986 348999999999999988
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCCCCccccCCCcEEEEEEE
Q 037461 482 KRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYI 521 (1077)
Q Consensus 482 ~evl~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~AYmLfY~ 521 (1077)
.+|+ ..+||||||+
T Consensus 298 ~~~~--------------------------~~~~YilfY~ 311 (311)
T cd02658 298 PPEM--------------------------KKLGYIYFYQ 311 (311)
T ss_pred cccc--------------------------CCcceEEEEC
Confidence 7773 2489999995
No 17
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.7e-49 Score=466.85 Aligned_cols=293 Identities=23% Similarity=0.302 Sum_probs=238.6
Q ss_pred cccceeecccCCcccchhhhhHHHhhhHHHHHHhccCCCCCC-CCCCCCHHHHHHHHHHHHhcC---CCcccchhhhhhc
Q 037461 194 KETGYVGLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTTEN-DMPSGSIPLALQSLFYKLQYS---DSSVATKELTKSF 269 (1077)
Q Consensus 194 ~~~g~vGL~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~-~~~~~~l~~~Lq~Lf~~l~~s---~~~v~~~~l~~s~ 269 (1077)
..+|++||.|+||||||||+||+|+++|+||++++....... .....++.++|+.++..++.. +.+++|.+|+.++
T Consensus 115 ~~~G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~~~~~~~l~~~l~~l~~kl~~~~~~~~~isP~~fl~~l 194 (440)
T cd02669 115 YLPGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENIKDRKSELVKRLSELIRKIWNPRNFKGHVSPHELLQAV 194 (440)
T ss_pred ccCCccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccccccccCCCcHHHHHHHHHHHHHhccccCCCccCHHHHHHHH
Confidence 356999999999999999999999999999999987543211 123457899999999999875 3689999999888
Q ss_pred cC---CcccccccccHHHHHHHHHHHHHHHhcCC--ccccccccccceEEeeEEEeeeee---------------eecce
Q 037461 270 GW---DTYDSFMQHDVQELNRVLSEKLEDKMKGT--VVEGTIQQLFEGHHMNYIECINVD---------------YKSTR 329 (1077)
Q Consensus 270 ~~---~~~~~~~QqDa~Efl~~Lld~Le~e~~~~--~~~~~i~~lF~G~~~~~i~C~~C~---------------~~s~~ 329 (1077)
+. ..|..++||||+||+.+||+.|++++++. ...+.|.++|+|++.+.+.|..|. ..+.+
T Consensus 195 ~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~l~~~~~~~~~ii~~~F~G~l~~~~~c~~~~~~~~~~~~~~~~c~~~~s~~ 274 (440)
T cd02669 195 SKVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGSKKPNSSIIHDCFQGKVQIETQKIKPHAEEEGSKDKFFKDSRVKKTS 274 (440)
T ss_pred HhhcccccCCcccCCHHHHHHHHHHHHHHHhccCCCCCCCcceeccCceEEEEEEeecccccccccccccccccccceee
Confidence 64 35778899999999999999999999863 456889999999999999987654 24567
Q ss_pred eeeeeeeeeeecCCCCHH-----HHHhhccceEEecCCCcccccccC-eeeceeeEEeccCCCeEEEEEeeEEEecccCe
Q 037461 330 KESFYDLQLDVKGCRDVY-----ASFDKYVEVERLEGDNKYHAEQYG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDT 403 (1077)
Q Consensus 330 ~E~f~~L~L~v~~~~sL~-----esL~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vLiI~LkRF~~d~~~~~ 403 (1077)
.++|++|+|+|++..... .++....-.|.|+ +|.|+.|. .+++.|+..|.++|++|+||||||.++. ..
T Consensus 275 ~~pF~~LsLdip~~~~~~~~~~~~~l~~~~l~e~L~---ky~~~~c~~~~~a~k~~~I~~LP~vLiihLKRF~~~~--~~ 349 (440)
T cd02669 275 VSPFLLLTLDLPPPPLFKDGNEENIIPQVPLKQLLK---KYDGKTETELKDSLKRYLISRLPKYLIFHIKRFSKNN--FF 349 (440)
T ss_pred eccceEEEecCCCCccccccccccccCcccHHHHHH---hcCCccceecccceEEEEEeeCCcEEEEEEecccCCC--Cc
Confidence 899999999998753211 1111122222222 36677774 5688999999999999999999999874 55
Q ss_pred eeeccceEeeCcc-cccccccCCCCCCCc-CcCCCccEEEEEEEEeeecc-CCceEEEEEEeCCCCCEEEEeCceeeEec
Q 037461 404 MVKINDRYEFPLQ-LDLDRENGKYLSPDA-DRSVRNLYTLHSVLVHSGGV-HGGHYYAFIRPTLSDQWYKFDDERVTKED 480 (1077)
Q Consensus 404 ~~Ki~~~v~FP~~-LdL~~~~~~yl~~~~-~~~~~~~Y~L~gVVvH~Gs~-~~GHY~ayvr~~~~~~Wy~fnD~~Vt~vs 480 (1077)
..|+++.|+||.. ||| ++|+.++. ....+..|+|+|||+|.|+. ++|||+||+|...+|+||+|||+.|++++
T Consensus 350 ~~K~~t~V~FP~~~LDm----~~y~~~~~~~~~~~~~Y~L~avI~H~G~~~~sGHY~a~v~~~~~~~W~~fdD~~V~~v~ 425 (440)
T cd02669 350 KEKNPTIVNFPIKNLDL----SDYVHFDKPSLNLSTKYNLVANIVHEGTPQEDGTWRVQLRHKSTNKWFEIQDLNVKEVL 425 (440)
T ss_pred cccCCCEEECCCCccch----hhhhCccccccCCCceEEEEEEEEEeccCCCCeeEEEEEEcCCCCeEEEEECCeeeEcC
Confidence 6899999999997 899 88886443 22456899999999999987 99999999998768999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCCCCccccCCCcEEEEEEE
Q 037461 481 LKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYI 521 (1077)
Q Consensus 481 ~~evl~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~AYmLfY~ 521 (1077)
+++|+. +.||||||+
T Consensus 426 ~~~v~~--------------------------~eaYll~Y~ 440 (440)
T cd02669 426 PQLIFL--------------------------SESYIQIWE 440 (440)
T ss_pred HHHhcc--------------------------CCceEEEeC
Confidence 999853 489999995
No 18
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=100.00 E-value=8.1e-49 Score=427.19 Aligned_cols=220 Identities=41% Similarity=0.741 Sum_probs=161.7
Q ss_pred eccchhhhccccCCceEEEEEeecCCCCCCCCCCCCCCCcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhc
Q 037461 611 VGQLREVSNKVHNAELKLFLEVERGPDLRPIAPPEKTKEDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMA 690 (1077)
Q Consensus 611 ~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 690 (1077)
|++++..... ..++++||||+....+.....++...+++||||||||||.+|+|+|+||++|+++++|++|+|.|+++|
T Consensus 30 l~~~~~~~~~-~~~~~~lflE~~~~~~~~~~~~~~~~~~~iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~ 108 (249)
T PF12436_consen 30 LEEVRNKDSN-KQSELRLFLEEASPNSPSEPLPPYDPSDDILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERA 108 (249)
T ss_dssp CHHHHTS--S----SEEEEEEE--HHTTT-------TTTEEEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHH
T ss_pred HHHHhhcccc-cccccEEEEeccCcccccccCCCCCCCCcEEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHc
Confidence 4555554443 456899999996543333345677788999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEEEeecCCcccccccccccccccccCCCCCEEEEEecCCCCCCCCCCCCCHHHHHHHHhcceEEEEEecC
Q 037461 691 GYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICFQKSTPIEGVGKFRYPEVPSFLDYVHNRQVVHFRSLE 770 (1077)
Q Consensus 691 ~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~GdIi~fQ~~~~~~~~~~~~~~~~~~yy~~L~nr~~v~f~~~~ 770 (1077)
|||+||+|.+||||| |+ +|++|+++.||.++||+||||||||+....+...+..|+||++||+||+||++|+|++..
T Consensus 109 g~p~~t~l~lyEEi~--~~-~ie~i~~~~t~~~~el~~GdIi~fQ~~~~~~~~~~~~~~~v~~Yy~~l~nrv~V~f~~~~ 185 (249)
T PF12436_consen 109 GLPPDTPLLLYEEIK--PN-MIEPIDPNQTFEKAELQDGDIICFQRAPSEDLDKSSRYPDVKEYYDFLYNRVEVEFKPKD 185 (249)
T ss_dssp T--TT--EEEEEEEE--TT-EEEE--SSSBHHHTT--TTEEEEEEE--GG--GGGSSS-SHHHHHHHHHHEEEEEEEETT
T ss_pred CCCCCCceEEEEEec--cc-eeeEcCCCCchhhcccCCCCEEEEEeccccccccccCCCCHHHHHHHHhCeEEEEEEECC
Confidence 999999999999998 76 679999999999999999999999999877677888999999999999999999999999
Q ss_pred CCCCCCeEEEecccCCHHHHHHHHHHHcCCCCCCcEEEeeccccCCCCCCCcccccCccchHHhh
Q 037461 771 KPKEDDFCLEMSKLYTYDDVVERVAQQLGLDDPSKIRLTSHNCYSQQPKPQPIKYRGVDHLSDML 835 (1077)
Q Consensus 771 ~~~~~~f~~~ls~~~~Y~~~~~~v~~~l~~~~p~~lr~~~~~~~~~~~~~~~~~~~~~~~l~~~l 835 (1077)
.+.+++|+||||++|||+|||++||++||+ ||++||||++++|+++|+..+++++.++||+|||
T Consensus 186 ~~~~~~F~l~ls~~~tY~~la~~Va~~l~~-dP~~lr~~~~~~~~~~P~~~~~r~~~~~tL~dil 249 (249)
T PF12436_consen 186 NPNDPEFTLWLSKKMTYDQLAEKVAEHLNV-DPEHLRFFTVNPYSGKPKSQPIRYSDNGTLKDIL 249 (249)
T ss_dssp STT---EEEEEETT--HHHHHHHHHHHHTS--GGGEEEE---TTS-S---SB--TT--S-HHHHS
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHCC-ChHHEEEEEeccCCCCCCCccccCCCCCcHHHhC
Confidence 998889999999999999999999999998 7999999999999999998888988899999996
No 19
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.5e-47 Score=415.17 Aligned_cols=203 Identities=31% Similarity=0.515 Sum_probs=186.0
Q ss_pred ecccCCcccchhhhhHHHhhhHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccchhhhhhccCCccccccc
Q 037461 200 GLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDSSVATKELTKSFGWDTYDSFMQ 279 (1077)
Q Consensus 200 GL~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~l~~~Lq~Lf~~l~~s~~~v~~~~l~~s~~~~~~~~~~Q 279 (1077)
||+|.||||||||+||+|+++|+||++++... .|
T Consensus 1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~~----------------------------------------------~Q 34 (240)
T cd02662 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL----------------------------------------------EQ 34 (240)
T ss_pred CCcCCCCccHHHHHHHHHHCCHHHHHHHHHHH----------------------------------------------hh
Confidence 89999999999999999999999999987522 79
Q ss_pred ccHHHHHHHHHHHHHHHhcCCccccccccccceEEeeEEEeeeeeeecc-eeeeeeeeeeeecCC-----CCHHHHHhhc
Q 037461 280 HDVQELNRVLSEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKST-RKESFYDLQLDVKGC-----RDVYASFDKY 353 (1077)
Q Consensus 280 qDa~Efl~~Lld~Le~e~~~~~~~~~i~~lF~G~~~~~i~C~~C~~~s~-~~E~f~~L~L~v~~~-----~sL~esL~~~ 353 (1077)
|||+||+..||+.|+. .+.++|.|++.+.++|..|++.+. +.|+|++|+|++++. .+|++||+.|
T Consensus 35 qDa~EFl~~ll~~l~~---------~i~~~F~g~~~~~i~C~~C~~~s~~~~e~f~~LsL~ip~~~~~~~~sl~~~L~~~ 105 (240)
T cd02662 35 QDAHELFQVLLETLEQ---------LLKFPFDGLLASRIVCLQCGESSKVRYESFTMLSLPVPNQSSGSGTTLEHCLDDF 105 (240)
T ss_pred cCHHHHHHHHHHHHHH---------hccCccccEEEEEEEeCCCCCccCcceeeeeeeEecccccCCCCCCCHHHHHHHh
Confidence 9999999999999983 477899999999999999999876 499999999999875 5899999999
Q ss_pred cceEEecCCCcccccccCeeeceeeEEeccCCCeEEEEEeeEEEecccCeeeeccceEeeCcccccccccCCCCCCCcCc
Q 037461 354 VEVERLEGDNKYHAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRENGKYLSPDADR 433 (1077)
Q Consensus 354 ~~~E~l~g~n~y~C~~c~~~~a~k~~~i~~lP~vLiI~LkRF~~d~~~~~~~Ki~~~v~FP~~LdL~~~~~~yl~~~~~~ 433 (1077)
+.+|.++| |.|+.| +..|.++|++|+|||+||.|+.. +...|++++|.||..|
T Consensus 106 ~~~E~l~~---~~C~~C-------~~~i~~lP~vLii~LkRF~~~~~-~~~~K~~~~v~fp~~l---------------- 158 (240)
T cd02662 106 LSTEIIDD---YKCDRC-------QTVIVRLPQILCIHLSRSVFDGR-GTSTKNSCKVSFPERL---------------- 158 (240)
T ss_pred cCcccccC---cCCCCC-------eEEeecCCcEEEEEEEEEEEcCC-CceeeeccEEECCCcc----------------
Confidence 99999987 899999 56899999999999999999876 7889999999999877
Q ss_pred CCCccEEEEEEEEeeeccCCceEEEEEEeC--------------------CCCCEEEEeCceeeEecHHHHH
Q 037461 434 SVRNLYTLHSVLVHSGGVHGGHYYAFIRPT--------------------LSDQWYKFDDERVTKEDLKRAL 485 (1077)
Q Consensus 434 ~~~~~Y~L~gVVvH~Gs~~~GHY~ayvr~~--------------------~~~~Wy~fnD~~Vt~vs~~evl 485 (1077)
....|+|+|||+|.|+.++|||+||+|.. ..+.||+|||+.|++++.++|+
T Consensus 159 -~~~~Y~L~avi~H~G~~~~GHY~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~ 229 (240)
T cd02662 159 -PKVLYRLRAVVVHYGSHSSGHYVCYRRKPLFSKDKEPGSFVRMREGPSSTSHPWWRISDTTVKEVSESEVL 229 (240)
T ss_pred -CCceEEEEEEEEEeccCCCceEEEEEeCCCcccccccccccccccccCccCCCEEEEechheEEeCHHHHh
Confidence 24679999999999988999999999986 3489999999999999999996
No 20
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.6e-47 Score=431.87 Aligned_cols=268 Identities=29% Similarity=0.430 Sum_probs=228.0
Q ss_pred eecccCCcccchhhhhHHHhhhHHHHHHhccCCCCCC--------------CC-------CCCCHHHHHHHHHHHHhcCC
Q 037461 199 VGLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTTEN--------------DM-------PSGSIPLALQSLFYKLQYSD 257 (1077)
Q Consensus 199 vGL~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~--------------~~-------~~~~l~~~Lq~Lf~~l~~s~ 257 (1077)
+||.|+||||||||+||+||++|+||++|++.+.... .. ...+++.+|++||..|+.+.
T Consensus 2 vGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s~ 81 (343)
T cd02666 2 AGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHSN 81 (343)
T ss_pred CCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhCC
Confidence 8999999999999999999999999999998762211 00 11258899999999999876
Q ss_pred -CcccchhhhhhccCCcccccccccHHHHHHHHHHHHHHHhcCCcc-------------ccccccccceEEeeEEEeeee
Q 037461 258 -SSVATKELTKSFGWDTYDSFMQHDVQELNRVLSEKLEDKMKGTVV-------------EGTIQQLFEGHHMNYIECINV 323 (1077)
Q Consensus 258 -~~v~~~~l~~s~~~~~~~~~~QqDa~Efl~~Lld~Le~e~~~~~~-------------~~~i~~lF~G~~~~~i~C~~C 323 (1077)
.++.|..++..+.+ .||||+||++.||+.|+.+++.... .+.|.++|.|++++.+.|..|
T Consensus 82 ~~~v~P~~~l~~l~~------~QQDa~Ef~~~lld~Le~~lk~~~~~~~~~~~~~~~~~~~~I~~lF~G~~~~~i~c~~~ 155 (343)
T cd02666 82 TRSVTPSKELAYLAL------RQQDVTECIDNVLFQLEVALEPISNAFAGPDTEDDKEQSDLIKRLFSGKTKQQLVPESM 155 (343)
T ss_pred CCccCcHHHHHhccc------cccchHHHHHHHHHHHHHHhcCccccccCcccccccchhhhhhHhceeeEEEEEEeccc
Confidence 78889888877654 8999999999999999999986553 457999999999999999998
Q ss_pred e---eecceeeeeeeeeeeecC----------CCCHHHHHhhccceEEecCCCcccccccCeeeceeeEEeccCCCeEEE
Q 037461 324 D---YKSTRKESFYDLQLDVKG----------CRDVYASFDKYVEVERLEGDNKYHAEQYGLQDAKKGVLFIDFPPVLQL 390 (1077)
Q Consensus 324 ~---~~s~~~E~f~~L~L~v~~----------~~sL~esL~~~~~~E~l~g~n~y~C~~c~~~~a~k~~~i~~lP~vLiI 390 (1077)
+ ..+.+.|+|++|+|+|++ ..+|++||+.|+..|. |.++|+||.|
T Consensus 156 ~~~~~~s~~~E~F~~L~l~I~~~~~~~~~~~~~~~L~d~L~~~~~~e~----------------------~~~~P~vl~~ 213 (343)
T cd02666 156 GNQPSVRTKTERFLSLLVDVGKKGREIVVLLEPKDLYDALDRYFDYDS----------------------LTKLPQRSQV 213 (343)
T ss_pred CCCCCCccccceeEEEEEecCcccccccccCCCCCHHHHHHHhcChhh----------------------hccCCHHHHH
Confidence 6 788999999999999984 6899999999998765 8999999999
Q ss_pred EEeeEEEecccCeeeeccceEeeCcccccccccCCCCCCCcC--------------------------cCCCccEEEEEE
Q 037461 391 QLKRFEYDFMRDTMVKINDRYEFPLQLDLDRENGKYLSPDAD--------------------------RSVRNLYTLHSV 444 (1077)
Q Consensus 391 ~LkRF~~d~~~~~~~Ki~~~v~FP~~LdL~~~~~~yl~~~~~--------------------------~~~~~~Y~L~gV 444 (1077)
||+ ++.......+.+++++||...|. .+++..+.. ....+.|+|+||
T Consensus 214 qlq---~~~~~~~~~~~~dry~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Y~L~av 286 (343)
T cd02666 214 QAQ---LAQPLQRELISMDRYELPSSIDD----IDELIREAIQSESSLVRQAQNELAELKHEIEKQFDDLKSYGYRLHAV 286 (343)
T ss_pred HHh---hcccccchheeeccccccchHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceEEEEE
Confidence 999 56666777788888888887777 444432211 225789999999
Q ss_pred EEeeeccCCceEEEEEEeCCCCCEEEEeCceeeEecHHHHHHHhcCCCCCCCCCCCCCCCCCccccCCCcEEEEEEE
Q 037461 445 LVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDLKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYI 521 (1077)
Q Consensus 445 VvH~Gs~~~GHY~ayvr~~~~~~Wy~fnD~~Vt~vs~~evl~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~AYmLfY~ 521 (1077)
|+|+|+.++|||++|+|+..++.||+|||+.|++++.++++..++|+. .+||||+|+
T Consensus 287 v~H~G~~~~GHY~~~~~~~~~~~W~~~dD~~V~~v~~~ev~~~~~~~~--------------------~~pY~l~Yv 343 (343)
T cd02666 287 FIHRGEASSGHYWVYIKDFEENVWRKYNDETVTVVPASEVFLFTLGNT--------------------ATPYFLVYV 343 (343)
T ss_pred EEeecCCCCCeEEEEEEECCCCeEEEEECCeeEEecHHHHhhcccCCC--------------------CCCEEEEeC
Confidence 999999999999999999877899999999999999999998877753 489999995
No 21
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3e-46 Score=399.47 Aligned_cols=220 Identities=31% Similarity=0.546 Sum_probs=195.6
Q ss_pred ecccCCcccchhhhhHHHhhhHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccchhhhhhccCCccccccc
Q 037461 200 GLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDSSVATKELTKSFGWDTYDSFMQ 279 (1077)
Q Consensus 200 GL~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~l~~~Lq~Lf~~l~~s~~~v~~~~l~~s~~~~~~~~~~Q 279 (1077)
||.|.|||||+|++.|+|+. +|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~----------------------------------------------------------~Q 22 (228)
T cd02665 1 GLKNVGNTCWFSAVIQSLFS----------------------------------------------------------QQ 22 (228)
T ss_pred CccccCcchhHHHHHHHHHH----------------------------------------------------------HH
Confidence 89999999999999999988 69
Q ss_pred ccHHHHHHHHHHHHHHHhcCC--------ccccccccccceEEeeEEEeeeeeeecceeeeeeeeeeeecCCCCHHHHHh
Q 037461 280 HDVQELNRVLSEKLEDKMKGT--------VVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFD 351 (1077)
Q Consensus 280 qDa~Efl~~Lld~Le~e~~~~--------~~~~~i~~lF~G~~~~~i~C~~C~~~s~~~E~f~~L~L~v~~~~sL~esL~ 351 (1077)
|||+||++.||+.|+++++.+ ...+.|.++|+|++.+.+.| |+..+.+.|+|++|+|+|++..+|++||+
T Consensus 23 QDa~Ef~~~Lld~Le~~l~~~~~~~~~~~~~~~~i~~lF~G~~~~~~~~--~~~~s~~~E~F~~L~l~i~~~~~L~e~L~ 100 (228)
T cd02665 23 QDVSEFTHLLLDWLEDAFQAAAEAISPGEKSKNPMVQLFYGTFLTEGVL--EGKPFCNCETFGQYPLQVNGYGNLHECLE 100 (228)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccccccccchHhhceEEEEEEEEEE--CCCcccccCccEEEEEEECCCCCHHHHHH
Confidence 999999999999999999744 34567999999999976665 78889999999999999999999999999
Q ss_pred hccceEEecCCCcccccccCeeeceeeEEeccCCCeEEEEEeeEEEecccCeeeeccceEeeCcccccccccCCCCCCCc
Q 037461 352 KYVEVERLEGDNKYHAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRENGKYLSPDA 431 (1077)
Q Consensus 352 ~~~~~E~l~g~n~y~C~~c~~~~a~k~~~i~~lP~vLiI~LkRF~~d~~~~~~~Ki~~~v~FP~~LdL~~~~~~yl~~~~ 431 (1077)
.++.+|.+++++.++ ...+.++..|.++|++|+|||+||.|+. +...|++++|+||.+|.
T Consensus 101 ~~~~ee~l~~~~~~~-----~~~~~~~~~i~~lP~vL~i~LkRF~~~~--~~~~Ki~~~v~FP~~l~------------- 160 (228)
T cd02665 101 AAMFEGEVELLPSDH-----SVKSGQERWFTELPPVLTFELSRFEFNQ--GRPEKIHDKLEFPQIIQ------------- 160 (228)
T ss_pred Hhhhhcccccccccc-----hhhhhhhhhhhhCChhhEEEeEeeEEcC--CccEECCEEEEeeCccC-------------
Confidence 999999998854332 2346677789999999999999999975 56789999999998772
Q ss_pred CcCCCccEEEEEEEEeeeccCCceEEEEEEeCCCCCEEEEeCceeeEecHHHHHHHhcCCCCCCCCCCCCCCCCCccccC
Q 037461 432 DRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDLKRALEEQYGGEEELPQTNPGFNNTPFKFTK 511 (1077)
Q Consensus 432 ~~~~~~~Y~L~gVVvH~Gs~~~GHY~ayvr~~~~~~Wy~fnD~~Vt~vs~~evl~~~~Gg~~~~~~~~~~~~~~~~~~~~ 511 (1077)
...|+|+|||+|+|++++|||+||+|+..+++||+|||+.|++++.++|+.++|||..
T Consensus 161 ----~~~Y~L~aVi~H~G~~~~GHY~~~i~~~~~~~W~~fdD~~V~~~~~~~v~~~~fGg~~------------------ 218 (228)
T cd02665 161 ----QVPYELHAVLVHEGQANAGHYWAYIYKQSRQEWEKYNDISVTESSWEEVERDSFGGGR------------------ 218 (228)
T ss_pred ----CceeEEEEEEEecCCCCCCEEEEEEEcCCCCEEEEEECCeeEEcCHHHHhhhccCCCC------------------
Confidence 2469999999999999999999999987789999999999999999999999999964
Q ss_pred CCcEEEEEEE
Q 037461 512 YSNAYMLVYI 521 (1077)
Q Consensus 512 ~~~AYmLfY~ 521 (1077)
+.+||||||+
T Consensus 219 ~~~AYiLfYv 228 (228)
T cd02665 219 NPSAYCLMYI 228 (228)
T ss_pred CCceEEEEEC
Confidence 2589999995
No 22
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-44 Score=377.14 Aligned_cols=283 Identities=24% Similarity=0.408 Sum_probs=222.3
Q ss_pred cceeecccCCcccchhhhhHHHhhhHHHHHHhc------cCCCCCCCCCCCCHHHHHHHHHHHHhc-----CCCcccchh
Q 037461 196 TGYVGLKNQGATCYMNSLLQTLFHIPYFRKAVY------HMPTTENDMPSGSIPLALQSLFYKLQY-----SDSSVATKE 264 (1077)
Q Consensus 196 ~g~vGL~N~GnTCYmNSvLQ~L~~~p~fr~~l~------~~~~~~~~~~~~~l~~~Lq~Lf~~l~~-----s~~~v~~~~ 264 (1077)
-..+||.|.|||||||++||||+.+..+...+. .+.+.. +.+.-...+.+-|..++. +...|+|..
T Consensus 69 ~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~---prg~~g~~~~k~F~~l~~~~~~Hg~~sis~~n 145 (415)
T COG5533 69 LPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDF---PRGKPGSNAFKQFIALYETPGCHGPKSISPRN 145 (415)
T ss_pred cCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCC---CCCCcchhHHHHHHHHHhccccCCCcccchHH
Confidence 345899999999999999999999999987442 233322 222222233333444433 456799999
Q ss_pred hhhhccC--CcccccccccHHHHHHHHHHHHHHHhcCCcc-----------------------------------ccccc
Q 037461 265 LTKSFGW--DTYDSFMQHDVQELNRVLSEKLEDKMKGTVV-----------------------------------EGTIQ 307 (1077)
Q Consensus 265 l~~s~~~--~~~~~~~QqDa~Efl~~Lld~Le~e~~~~~~-----------------------------------~~~i~ 307 (1077)
+++.++. +.|...+|||+|||+.++||.||+++++... .+.+.
T Consensus 146 F~~i~~~~n~~fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EWn~~L~sn~S~v~ 225 (415)
T COG5533 146 FIDILSGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHLRSNKSLVA 225 (415)
T ss_pred HHHHHccccccccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhhHHhhccchHHHH
Confidence 9998874 5677789999999999999999999875431 25678
Q ss_pred cccceEEeeEEEeeeeeeecceeeeeeeeeeeecCCC--CHHHHHhhccceEEecCCCcccccccC-eeeceeeEEeccC
Q 037461 308 QLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCR--DVYASFDKYVEVERLEGDNKYHAEQYG-LQDAKKGVLFIDF 384 (1077)
Q Consensus 308 ~lF~G~~~~~i~C~~C~~~s~~~E~f~~L~L~v~~~~--sL~esL~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~l 384 (1077)
+.|.|+..+...|..|++.|++..+|..|.+++.... .|++||++|.++|.|+|+.+|.|++|+ ++.++|++.|..+
T Consensus 226 ~~f~gq~~srlqC~~C~~TStT~a~fs~l~vp~~~v~~~~l~eC~~~f~~~e~L~g~d~W~CpkC~~k~ss~K~~~I~~l 305 (415)
T COG5533 226 KTFFGQDKSRLQCEACNYTSTTIAMFSTLLVPPYEVVQLGLQECIDRFYEEEKLEGKDAWRCPKCGRKESSRKRMEILVL 305 (415)
T ss_pred HHHhhhhhhhhhhhhcCCceeEEeccceeeeccchheeecHHHHHHHhhhHHhhcCcccccCchhcccccchheEEEEec
Confidence 8999999999999999999999999999999997644 599999999999999999999999998 6789999999999
Q ss_pred CCeEEEEEeeEEEecccCeeeeccceEeeCcccccccccCCCCCCC-------------cCcCCCccEEEEEEEEeeecc
Q 037461 385 PPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRENGKYLSPD-------------ADRSVRNLYTLHSVLVHSGGV 451 (1077)
Q Consensus 385 P~vLiI~LkRF~~d~~~~~~~Ki~~~v~FP~~LdL~~~~~~yl~~~-------------~~~~~~~~Y~L~gVVvH~Gs~ 451 (1077)
|++|+|||+||... |..|..||+ .++.... .-.-.+..|.|+|||||.|+.
T Consensus 306 P~~LII~i~RF~i~------------V~~~~kiD~----p~gw~~~~~~e~~v~~~f~~~~~~~P~~Y~L~gv~Ch~G~L 369 (415)
T COG5533 306 PDVLIIHISRFHIS------------VMGRKKIDT----PQGWKNTASVEVNVTLLFNNGIGYIPRKYSLLGVVCHNGTL 369 (415)
T ss_pred CceEEEEeeeeeEE------------eecccccCC----CcchhccCCceecccccccCCCCCCccceeEEEEEeeccee
Confidence 99999999999732 233333444 1221111 112346789999999999999
Q ss_pred CCceEEEEEEeCCCCCEEEEeCceeeEecHHHHHHHhcCCCCCCCCCCCCCCCCCccccCCCcEEEEEEEecc
Q 037461 452 HGGHYYAFIRPTLSDQWYKFDDERVTKEDLKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRES 524 (1077)
Q Consensus 452 ~~GHY~ayvr~~~~~~Wy~fnD~~Vt~vs~~evl~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~AYmLfY~R~~ 524 (1077)
++|||+++|+. ++.|+.|||+.|++++...-+ +..+||+|||.|.+
T Consensus 370 ~gGHY~s~v~~--~~~W~~~dDs~vr~~~~~t~~-------------------------~~pSsYilFY~r~~ 415 (415)
T COG5533 370 NGGHYFSEVKR--SGTWNVYDDSQVRKGSRTTSG-------------------------SHPSSYILFYTRSS 415 (415)
T ss_pred cCceeEEeeee--cCceEEechhheeeccceecc-------------------------cCCcceEEEEEecC
Confidence 99999999998 699999999999998643221 12489999999853
No 23
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-45 Score=413.85 Aligned_cols=298 Identities=30% Similarity=0.454 Sum_probs=254.0
Q ss_pred ccccceeecccCCcccchhhhhHHHhhhHHHHHHhccCCC------CCCCCCCCCHHHHHHHHHHHHhcC-CCcccchhh
Q 037461 193 KKETGYVGLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPT------TENDMPSGSIPLALQSLFYKLQYS-DSSVATKEL 265 (1077)
Q Consensus 193 k~~~g~vGL~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~~~------~~~~~~~~~l~~~Lq~Lf~~l~~s-~~~v~~~~l 265 (1077)
.++.|.+||.|+||||||||.||||.|++.+|++++.-.- .+...-.+.++.+...|..++... ..++.|..+
T Consensus 260 nke~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~~haf~Ps~f 339 (823)
T COG5560 260 NKEAGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGF 339 (823)
T ss_pred HhhccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCccccccChHHH
Confidence 3556999999999999999999999999999999975322 111222357788888888888765 467899999
Q ss_pred hhhccC--CcccccccccHHHHHHHHHHHHHHHhcCC--------------------------------ccccccccccc
Q 037461 266 TKSFGW--DTYDSFMQHDVQELNRVLSEKLEDKMKGT--------------------------------VVEGTIQQLFE 311 (1077)
Q Consensus 266 ~~s~~~--~~~~~~~QqDa~Efl~~Lld~Le~e~~~~--------------------------------~~~~~i~~lF~ 311 (1077)
...+|. ..|.++.|||.|||+.+|||.||+.++.- ...+.|.+||.
T Consensus 340 K~tIG~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSiItdLFq 419 (823)
T COG5560 340 KKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQ 419 (823)
T ss_pred HHHHhhhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 999984 57899999999999999999999998620 03578999999
Q ss_pred eEEeeEEEeeeeeeecceeeeeeeeeeeecCC---------------CC-------------------------------
Q 037461 312 GHHMNYIECINVDYKSTRKESFYDLQLDVKGC---------------RD------------------------------- 345 (1077)
Q Consensus 312 G~~~~~i~C~~C~~~s~~~E~f~~L~L~v~~~---------------~s------------------------------- 345 (1077)
|..++...|..|+.+|..++||.+|+|++|-. .+
T Consensus 420 gmyKSTL~Cp~C~~vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~pl~iel~~sSt~~~lk~lv~~~~gk~gc~ei 499 (823)
T COG5560 420 GMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLKIELDASSTIRGLKKLVDAEYGKLGCFEI 499 (823)
T ss_pred HHhhceeeccCcCceeeeecchhhccccCchhhcccccEEEECCCCCCCceEEEEeccchHHHHHHHHHHHhccCCccce
Confidence 99999999999999999999999999998610 00
Q ss_pred --------------------------------------------------------------------------------
Q 037461 346 -------------------------------------------------------------------------------- 345 (1077)
Q Consensus 346 -------------------------------------------------------------------------------- 345 (1077)
T Consensus 500 ~v~~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe~~~ngi~vpvvh~~~~~gYks~rlFg~pflqlnv~~~~~i~~kLv 579 (823)
T COG5560 500 KVMCIYYGGNYNMLEPADKVLLQDIPQTDFVYLYETNDNGIEVPVVHLRIEKGYKSKRLFGDPFLQLNVLIKASIYDKLV 579 (823)
T ss_pred eEEEEEeccchhhcchhhHHHHhhcCccceEEEeecCCCCeEEEEEeccccccccchhhhCCcceEEEeecchhhHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 037461 346 -------------------------------------------------------------------------------- 345 (1077)
Q Consensus 346 -------------------------------------------------------------------------------- 345 (1077)
T Consensus 580 kE~~ell~~v~~k~tdvd~~~~q~~l~r~es~p~~wl~l~teid~kree~veeE~~~n~nd~vvi~cew~ek~y~~lFsy 659 (823)
T COG5560 580 KEFEELLVLVEMKKTDVDLVSEQVRLLREESSPSSWLKLETEIDTKREEQVEEEGQMNFNDAVVISCEWEEKRYLSLFSY 659 (823)
T ss_pred HHHHHHHHHHhhcchhhhhhhhhccchhcccCcchhhhhhhhccchhhhhhhhhhccCCCcceEEeeeccccchhhhhcC
Confidence
Q ss_pred -----------------HHHHHhhccceEEecCCCcccccccC-eeeceeeEEeccCCCeEEEEEeeEEEecccCeeeec
Q 037461 346 -----------------VYASFDKYVEVERLEGDNKYHAEQYG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKI 407 (1077)
Q Consensus 346 -----------------L~esL~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vLiI~LkRF~~d~~~~~~~Ki 407 (1077)
|++||..|.++|.|.-...|.|+.|+ ...|.|++.++++|.+|+||||||+++ +....||
T Consensus 660 ~~lw~~~ei~~~~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrqasKqmelwrlP~iLiihLkRFss~--rsfrdKi 737 (823)
T COG5560 660 DPLWTIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSV--RSFRDKI 737 (823)
T ss_pred CccchhHHhhhccCCCcHHHHHHHhccHhhcCCcccccCCchHhhhhhhhhhhhhcCChheeeehhhhhhc--ccchhhh
Confidence 89999999999999999999999996 788999999999999999999999965 5567899
Q ss_pred cceEeeCcc-cccccccCCCCCCCcCcCCCccEEEEEEEEeeeccCCceEEEEEEeCCCCCEEEEeCceeeEecHHHHHH
Q 037461 408 NDRYEFPLQ-LDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDLKRALE 486 (1077)
Q Consensus 408 ~~~v~FP~~-LdL~~~~~~yl~~~~~~~~~~~Y~L~gVVvH~Gs~~~GHY~ayvr~~~~~~Wy~fnD~~Vt~vs~~evl~ 486 (1077)
.+-|+||.. |||+.+...+. +....|.|+||=.|.|...+|||+||+|+..+++||+|||++|+++.+++.+
T Consensus 738 ddlVeyPiddldLs~~~~~~~------~p~liydlyavDNHygglsgGHYtAyarn~~n~~wy~fdDsritevdped~v- 810 (823)
T COG5560 738 DDLVEYPIDDLDLSGVEYMVD------DPRLIYDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSV- 810 (823)
T ss_pred hhhhccccccccccceEEeec------CcceEEEeeeccccccccCCcceeeeeecccCCceEEecCccccccCccccc-
Confidence 999999987 99955444441 2237899999999999999999999999998999999999999999887753
Q ss_pred HhcCCCCCCCCCCCCCCCCCccccCCCcEEEEEEEecc
Q 037461 487 EQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRES 524 (1077)
Q Consensus 487 ~~~Gg~~~~~~~~~~~~~~~~~~~~~~~AYmLfY~R~~ 524 (1077)
.++||+|||+|++
T Consensus 811 -------------------------tssaYvLFyrrk~ 823 (823)
T COG5560 811 -------------------------TSSAYVLFYRRKS 823 (823)
T ss_pred -------------------------cceeEEEEEEecC
Confidence 2489999999974
No 24
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.2e-43 Score=382.46 Aligned_cols=211 Identities=34% Similarity=0.561 Sum_probs=192.7
Q ss_pred ecccCCcccchhhhhHHHhhhHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccchhhhhhccCCccccccc
Q 037461 200 GLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDSSVATKELTKSFGWDTYDSFMQ 279 (1077)
Q Consensus 200 GL~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~l~~~Lq~Lf~~l~~s~~~v~~~~l~~s~~~~~~~~~~Q 279 (1077)
||.|.|||||+||+||+|++ .|
T Consensus 1 gl~n~~~~cy~n~~~Q~l~~----------------------------------------------------------~Q 22 (230)
T cd02674 1 GLRNLGNTCYMNSILQCLSA----------------------------------------------------------DQ 22 (230)
T ss_pred CccccCcchhhhHHHHHHHH----------------------------------------------------------hh
Confidence 89999999999999999999 69
Q ss_pred ccHHHHHHHHHHHHHHHhcCCccccccccccceEEeeEEEeeeeeeecceeeeeeeeeeeecCCC------CHHHHHhhc
Q 037461 280 HDVQELNRVLSEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCR------DVYASFDKY 353 (1077)
Q Consensus 280 qDa~Efl~~Lld~Le~e~~~~~~~~~i~~lF~G~~~~~i~C~~C~~~s~~~E~f~~L~L~v~~~~------sL~esL~~~ 353 (1077)
|||+||++.||+.|+ +.+.++|+|++.+.++|..|+..+.+.|+|+.|+|+++... +|+++|+.+
T Consensus 23 qDa~Ef~~~ll~~l~---------~~i~~~F~~~~~~~~~C~~C~~~~~~~e~~~~l~l~ip~~~~~~~~~sl~~~L~~~ 93 (230)
T cd02674 23 QDAQEFLLFLLDGLH---------SIIVDLFQGQLKSRLTCLTCGKTSTTFEPFTYLSLPIPSGSGDAPKVTLEDCLRLF 93 (230)
T ss_pred hhHHHHHHHHHHHHh---------hhHHheeCCEEeCcEEcCCCcCCcceecceeEEEEecccccCCCCCCCHHHHHHHh
Confidence 999999999999998 36889999999999999999999999999999999998654 999999999
Q ss_pred cceEEecCCCcccccccC-eeeceeeEEeccCCCeEEEEEeeEEEecccCeeeeccceEeeCc-ccccccccCCCCCCCc
Q 037461 354 VEVERLEGDNKYHAEQYG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPL-QLDLDRENGKYLSPDA 431 (1077)
Q Consensus 354 ~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vLiI~LkRF~~d~~~~~~~Ki~~~v~FP~-~LdL~~~~~~yl~~~~ 431 (1077)
+.+|.++|.+++.|++|+ .+.+.++..|.++|++|+|||+||.++. +...|+++.|+||. .+|+ .+|+.. .
T Consensus 94 ~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~~--~~~~K~~~~v~~~~~~l~l----~~~~~~-~ 166 (230)
T cd02674 94 TKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSR--GSTRKLTTPVTFPLNDLDL----TPYVDT-R 166 (230)
T ss_pred cCccccCCCCceeCCCCCCccceEEEEEEecCChhhEeEhhheecCC--CCcccCCceEecccccccc----ccccCc-c
Confidence 999999999999999997 6788999999999999999999999875 56789999999996 5899 676532 2
Q ss_pred CcCCCccEEEEEEEEeeeccCCceEEEEEEeCCCCCEEEEeCceeeEecHHHH
Q 037461 432 DRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDLKRA 484 (1077)
Q Consensus 432 ~~~~~~~Y~L~gVVvH~Gs~~~GHY~ayvr~~~~~~Wy~fnD~~Vt~vs~~ev 484 (1077)
.......|+|+|||+|.|+.++|||+||+|...+++||+|||+.|++++.+++
T Consensus 167 ~~~~~~~Y~L~~vI~H~G~~~~GHY~~~~~~~~~~~W~~fnD~~V~~i~~~~~ 219 (230)
T cd02674 167 SFTGPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSV 219 (230)
T ss_pred cCCCCceEEEEEEEEeeCCCCCcEEEEEEECCCCCceEEEcCCeEEEcCHHHc
Confidence 23456789999999999987999999999997669999999999999999887
No 25
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=100.00 E-value=1.2e-40 Score=365.78 Aligned_cols=245 Identities=35% Similarity=0.593 Sum_probs=202.2
Q ss_pred eeecccCCcccchhhhhHHHhhhHHHHHHhccC------CCCCCCCCCCCHHHHHHHHHHHHhcC---CCcccchhhhhh
Q 037461 198 YVGLKNQGATCYMNSLLQTLFHIPYFRKAVYHM------PTTENDMPSGSIPLALQSLFYKLQYS---DSSVATKELTKS 268 (1077)
Q Consensus 198 ~vGL~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~------~~~~~~~~~~~l~~~Lq~Lf~~l~~s---~~~v~~~~l~~s 268 (1077)
++||.|.||||||||+||+|+++|+||+++.+. ..........++..+|++||..|+.+ ...+.+..+...
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~ 80 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDFINA 80 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHH
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeecccccc
Confidence 589999999999999999999999999999976 22223334457999999999999987 567889999888
Q ss_pred ccC--CcccccccccHHHHHHHHHHHHHHHhcCCc-----------cccccccccceEEeeEEEeeeeeeecceeeeeee
Q 037461 269 FGW--DTYDSFMQHDVQELNRVLSEKLEDKMKGTV-----------VEGTIQQLFEGHHMNYIECINVDYKSTRKESFYD 335 (1077)
Q Consensus 269 ~~~--~~~~~~~QqDa~Efl~~Lld~Le~e~~~~~-----------~~~~i~~lF~G~~~~~i~C~~C~~~s~~~E~f~~ 335 (1077)
++. ..+..+.||||+||+..|++.|++++.... ..+.+.++|.+++.+.+.|..|+..
T Consensus 81 l~~~~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~c~~c~~~--------- 151 (269)
T PF00443_consen 81 LSSINPSFSNGEQQDAHEFLSFLLDWLDEEFNSSFKRKSWKNTNSSEDSLISDLFGGQFESSIKCSSCKNS--------- 151 (269)
T ss_dssp HHHHCGGGGSSSTEEHHHHHHHHHHHHHHHHTSCSSHHHHHHHHCCEESHHHHHH-EEEEEEEEETTTTCE---------
T ss_pred ccccccccccccccchhhhhcccccccchhhcccccccccccccccccccccccccccccccccccccccc---------
Confidence 864 457789999999999999999999987632 3567889999999999999999765
Q ss_pred eeeeecCCCCHHHHHhhccceEEecCCCcccccccCeeeceeeEEeccCCCeEEEEEeeEEEecccCeeeeccceEeeC-
Q 037461 336 LQLDVKGCRDVYASFDKYVEVERLEGDNKYHAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFP- 414 (1077)
Q Consensus 336 L~L~v~~~~sL~esL~~~~~~E~l~g~n~y~C~~c~~~~a~k~~~i~~lP~vLiI~LkRF~~d~~~~~~~Ki~~~v~FP- 414 (1077)
...|.++|++|+|+|+||.|+..++...|+.+++.||
T Consensus 152 ------------------------------------------~~~~~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~~~ 189 (269)
T PF00443_consen 152 ------------------------------------------QSSISSLPPILIIQLKRFEFDQETGRSKKINNPVEFPL 189 (269)
T ss_dssp ------------------------------------------EEEEEEBBSEEEEEEE-EEEESTSSEEEE--CEEB--S
T ss_pred ------------------------------------------ccccccccceeeeccccceeccccccccccccccccCc
Confidence 4568999999999999999998888899999999999
Q ss_pred cccccccccCCCCCCCcC-cCCCccEEEEEEEEeeeccCCceEEEEEEeCCCCCEEEEeCceeeEecHHHHHHHhcCCCC
Q 037461 415 LQLDLDRENGKYLSPDAD-RSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDLKRALEEQYGGEE 493 (1077)
Q Consensus 415 ~~LdL~~~~~~yl~~~~~-~~~~~~Y~L~gVVvH~Gs~~~GHY~ayvr~~~~~~Wy~fnD~~Vt~vs~~evl~~~~Gg~~ 493 (1077)
.+||| .+++..+.. ......|+|+|||+|.|+.++|||+||+|...+++|++|||+.|++++.++|++.+
T Consensus 190 ~~l~l----~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~a~v~~~~~~~W~~~dD~~v~~~~~~~v~~~~----- 260 (269)
T PF00443_consen 190 EELDL----SPYLEKNNSECQSNVKYRLVAVIVHYGSADSGHYVAYVRDSDDGKWYKFDDSRVTEVSWEEVIKSS----- 260 (269)
T ss_dssp SEEEG----GGGBSSCCCTHTSSSEEEEEEEEEEESSTTSEEEEEEEEETTTTEEEEEETTEEEEESHHHHCCGG-----
T ss_pred hhhhh----hhhhccccccccccceeeehhhhccccccccceEEEeeccccCCeEEEeeCCceEECCHHHHhhcc-----
Confidence 79999 677665432 12467999999999999889999999999976667999999999999999995432
Q ss_pred CCCCCCCCCCCCCccccCCCcEEEEEE
Q 037461 494 ELPQTNPGFNNTPFKFTKYSNAYMLVY 520 (1077)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~AYmLfY 520 (1077)
..+||||||
T Consensus 261 ------------------~~~~yll~Y 269 (269)
T PF00443_consen 261 ------------------NSTAYLLFY 269 (269)
T ss_dssp ------------------STCEEEEEE
T ss_pred ------------------CCceEEEeC
Confidence 258999999
No 26
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-40 Score=395.85 Aligned_cols=303 Identities=27% Similarity=0.462 Sum_probs=246.8
Q ss_pred CccccceeecccCCcccchhhhhHHHhhhHHHHHHhccCCCC-----CCCCCCCCHHHHHHHHHHHHhcC--CCcccchh
Q 037461 192 SKKETGYVGLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTT-----ENDMPSGSIPLALQSLFYKLQYS--DSSVATKE 264 (1077)
Q Consensus 192 sk~~~g~vGL~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~~~~-----~~~~~~~~l~~~Lq~Lf~~l~~s--~~~v~~~~ 264 (1077)
.....|.+||.|+|||||||++||||+.++.||..+++.... ........+..+...++..++.. ..++.|..
T Consensus 295 ~~~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~~~~~~s~~P~~ 374 (653)
T KOG1868|consen 295 STDVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWHGHGQFSVLPRR 374 (653)
T ss_pred cccccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhccCCCceecCcHH
Confidence 355678899999999999999999999999999665543110 12223345677777777777765 45678999
Q ss_pred hhhhcc--CCcccccccccHHHHHHHHHHHHHHHhcCCc-----------------------------------cccccc
Q 037461 265 LTKSFG--WDTYDSFMQHDVQELNRVLSEKLEDKMKGTV-----------------------------------VEGTIQ 307 (1077)
Q Consensus 265 l~~s~~--~~~~~~~~QqDa~Efl~~Lld~Le~e~~~~~-----------------------------------~~~~i~ 307 (1077)
|...++ ...+.+..|||+|||+..+++.|++++.... ....|.
T Consensus 375 f~~~~~~y~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~~~~d~~i~ 454 (653)
T KOG1868|consen 375 FIRVLKRYSPNFSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYLEEEDSKIG 454 (653)
T ss_pred HHHHHhhcccccccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhccccchHHH
Confidence 998887 3566778899999999999999999886421 123478
Q ss_pred cccceEEeeEEEeeeeeeecceeeeeeeeeeeecCC------CCHHHHHhhccceEEecCCCcccccccCeeece---ee
Q 037461 308 QLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGC------RDVYASFDKYVEVERLEGDNKYHAEQYGLQDAK---KG 378 (1077)
Q Consensus 308 ~lF~G~~~~~i~C~~C~~~s~~~E~f~~L~L~v~~~------~sL~esL~~~~~~E~l~g~n~y~C~~c~~~~a~---k~ 378 (1077)
++|.|++++.++|..|++.+.++++|++++|+|+.. .+|++|+..|+..|.++|+++|.|+.|++..+. |+
T Consensus 455 ~lf~gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~~~~~~~L~~C~~~ft~~ekle~~~~w~Cp~c~~~~~~~~lK~ 534 (653)
T KOG1868|consen 455 DLFVGQLKSYLKCQACGYTSTTFETFTDLSLPIPKKGFAGGKVSLEDCLSLFTKEEKLEGDEAWLCPRCKHKESSKTLKK 534 (653)
T ss_pred HHHHHHHHhheehhhcCCcceeeecceeeEEecccccccccccchHhhhccccchhhcccccccCCccccCcccccccce
Confidence 999999999999999999999999999999999632 359999999999999999999999999865544 89
Q ss_pred EEeccCCCeEEEEEeeEEEecccCeeeeccceEeeCcc-cccccccCCCCCCCcCcCCCccEEEEEEEEeeeccCCceEE
Q 037461 379 VLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQ-LDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYY 457 (1077)
Q Consensus 379 ~~i~~lP~vLiI~LkRF~~d~~~~~~~Ki~~~v~FP~~-LdL~~~~~~yl~~~~~~~~~~~Y~L~gVVvH~Gs~~~GHY~ 457 (1077)
..|.+||++|++||+||.++. +...|...-++||.. .++ .++..... .....|+|+|||+|.|+.++|||+
T Consensus 535 ~~i~~lp~iLiihL~Rf~~~~--~~~~k~~~~v~~~~~~~~~----~~~~~~~~--~~~~~Y~L~aVv~H~Gtl~sGHYt 606 (653)
T KOG1868|consen 535 LTILRLPKILIIHLKRFSSDG--NSFNKLSTGVDFPLREADL----SPRFAEKG--NNPKSYRLYAVVNHSGTLNSGHYT 606 (653)
T ss_pred eeeecCCHHHHHHHHHhccCc--ccccccceeeccchHhhhh----chhccccC--CCccceeeEEEEeccCcccCCceE
Confidence 999999999999999999874 456788999999986 555 44444332 234559999999999999999999
Q ss_pred EEEEeCCCCCEEEEeCceeeEecHHHHHHHhcCCCCCCCCCCCCCCCCCccccCCCcEEEEEEEeccCccc
Q 037461 458 AFIRPTLSDQWYKFDDERVTKEDLKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRESDKDK 528 (1077)
Q Consensus 458 ayvr~~~~~~Wy~fnD~~Vt~vs~~evl~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~AYmLfY~R~~~~~~ 528 (1077)
||++....+.|+.|||+.|+.++..++- ++.||+|||.|.+..+.
T Consensus 607 a~~~~~~~~~W~~fdDs~Vs~~~~~~~~--------------------------~s~aYIlFY~~~~~~~~ 651 (653)
T KOG1868|consen 607 AYVYKNEKQRWFTFDDSEVSPISETDVG--------------------------SSSAYILFYERLGIFEE 651 (653)
T ss_pred EEEeecCCCceEEecCeeeecccccccc--------------------------CCCceEEEeecCCcccc
Confidence 9999877889999999999987665551 35899999999886543
No 27
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.5e-39 Score=354.34 Aligned_cols=230 Identities=21% Similarity=0.307 Sum_probs=185.7
Q ss_pred cccCCcccchhhhhHHHhhhHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccchhhhhhccCCcccccccc
Q 037461 201 LKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDSSVATKELTKSFGWDTYDSFMQH 280 (1077)
Q Consensus 201 L~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~l~~~Lq~Lf~~l~~s~~~v~~~~l~~s~~~~~~~~~~Qq 280 (1077)
|.|.||.||+||.+|+|..+... .+.|..+.||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~-----------------------------------------------~~~F~~~~QQ 34 (245)
T cd02673 2 LVNTGNSCYFNSTMQALSSIGKI-----------------------------------------------NTEFDNDDQQ 34 (245)
T ss_pred ceecCCeeeehhHHHHHHHHhhh-----------------------------------------------hhhcCCCchh
Confidence 78999999999999998543321 1346678899
Q ss_pred cHHHHHHHHHHHHHHHhcCCc----------cccccccccceEEeeEEEeeeeeeecceeeeeeeeeeeecCC--CCHHH
Q 037461 281 DVQELNRVLSEKLEDKMKGTV----------VEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGC--RDVYA 348 (1077)
Q Consensus 281 Da~Efl~~Lld~Le~e~~~~~----------~~~~i~~lF~G~~~~~i~C~~C~~~s~~~E~f~~L~L~v~~~--~sL~e 348 (1077)
|||||++.|||.|++++++.. ......++|+|++.+.++|.+|++++.+.|+|++|+|+++.. ..+++
T Consensus 35 DAhEFL~~LLd~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~l~s~i~C~~C~~~s~~~e~~~~L~L~i~~~~~~~le~ 114 (245)
T cd02673 35 DAHEFLLTLLEAIDDIMQVNRTNVPPSNIEIKRLNPLEAFKYTIESSYVCIGCSFEENVSDVGNFLDVSMIDNKLDIDEL 114 (245)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccCCCCcccccccCHhHheeeEEEeEEEecCCCCeeeeccccceeccccccCCcchHHH
Confidence 999999999999998774321 111234789999999999999999999999999999999874 56788
Q ss_pred HHhhccceEEecCCCcccccccCeeeceeeEEeccCCCeEEEEEeeEEEecccCeeeeccceEeeCcccccccccCCCCC
Q 037461 349 SFDKYVEVERLEGDNKYHAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRENGKYLS 428 (1077)
Q Consensus 349 sL~~~~~~E~l~g~n~y~C~~c~~~~a~k~~~i~~lP~vLiI~LkRF~~d~~~~~~~Ki~~~v~FP~~LdL~~~~~~yl~ 428 (1077)
+++.+...+.++ |.|+.|+.+.|.++..|.++|+||+||||||.++.......|.+ .+++ .+|..
T Consensus 115 l~~~~~~~~~~e----~~C~~C~~~~a~k~~~i~~~P~vL~i~lkRf~~~~~~~~~~~~~-------~~~~----~~~~~ 179 (245)
T cd02673 115 LISNFKTWSPIE----KDCSSCKCESAISSERIMTFPECLSINLKRYKLRIATSDYLKKN-------EEIM----KKYCG 179 (245)
T ss_pred HHHHhhcccccC----ccCCCCCCccceeechhhhCChhhEEeeEeeeeccccccccccc-------cccc----ccccC
Confidence 888888776664 89999998889999999999999999999998754322222222 3456 55553
Q ss_pred CCcCcCCCccEEEEEEEEeeec-cCCceEEEEEEeCC-CCCEEEEeCceeeEecHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 037461 429 PDADRSVRNLYTLHSVLVHSGG-VHGGHYYAFIRPTL-SDQWYKFDDERVTKEDLKRALEEQYGGEEELPQTNPGFNNTP 506 (1077)
Q Consensus 429 ~~~~~~~~~~Y~L~gVVvH~Gs-~~~GHY~ayvr~~~-~~~Wy~fnD~~Vt~vs~~evl~~~~Gg~~~~~~~~~~~~~~~ 506 (1077)
....|+|+|||+|.|+ .++|||+||+|... +++||+|||+.|++++.++|++.
T Consensus 180 ------~~~~Y~L~~VV~H~G~~~~~GHY~a~vk~~~~~~~Wy~fnD~~V~~v~~~~v~~~------------------- 234 (245)
T cd02673 180 ------TDAKYSLVAVICHLGESPYDGHYIAYTKELYNGSSWLYCSDDEIRPVSKNDVSTN------------------- 234 (245)
T ss_pred ------CCceEEEEEEEEECCCCCCCceEEEEEEcCCCCCeEEEeeCceeeEcCHHHHhhc-------------------
Confidence 3467999999999995 89999999999875 68999999999999999999742
Q ss_pred ccccCCCcEEEEEEE
Q 037461 507 FKFTKYSNAYMLVYI 521 (1077)
Q Consensus 507 ~~~~~~~~AYmLfY~ 521 (1077)
.+++||||||+
T Consensus 235 ----~~~~aYiLFY~ 245 (245)
T cd02673 235 ----ARSSGYLIFYD 245 (245)
T ss_pred ----cCCceEEEEEC
Confidence 12589999995
No 28
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-39 Score=366.21 Aligned_cols=221 Identities=24% Similarity=0.372 Sum_probs=189.7
Q ss_pred ccccceeecccCCcccchhhhhHHHhhhHHHHHHhccCCCC---CCCCCCCCHHHHHHHHHHHHhcCC-----------C
Q 037461 193 KKETGYVGLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTT---ENDMPSGSIPLALQSLFYKLQYSD-----------S 258 (1077)
Q Consensus 193 k~~~g~vGL~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~~~~---~~~~~~~~l~~~Lq~Lf~~l~~s~-----------~ 258 (1077)
-..+||+||+|+||+|||||++|+|+.+|.|.......... ....|.+++-++|.+|...|.+++ .
T Consensus 302 ~~gpgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~~~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p~~~~~~qn 381 (763)
T KOG0944|consen 302 LFGPGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQERIFNCYPKDPTNDFNCQLAKLLHGMLSGKYSKPLMDPSNQN 381 (763)
T ss_pred ccCCCccceeecCcchhHHHHHHHheecccHHHhhccccceeecCCCCcchhHHHHHHHHHHHhhcCcccCccCCccccC
Confidence 34679999999999999999999999999998777654221 234567899999999999998742 2
Q ss_pred cccchhhhhhccC--CcccccccccHHHHHHHHHHHHHHHhcCCccccccccccceEEeeEEEeeeeeeecceeeeeeee
Q 037461 259 SVATKELTKSFGW--DTYDSFMQHDVQELNRVLSEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDL 336 (1077)
Q Consensus 259 ~v~~~~l~~s~~~--~~~~~~~QqDa~Efl~~Lld~Le~e~~~~~~~~~i~~lF~G~~~~~i~C~~C~~~s~~~E~f~~L 336 (1077)
.|+|..|....|. +.|..+.||||+||+.+||+.|++...+.. ..+.++|...+...+.|..|+..+...++-+.|
T Consensus 382 gIsP~mFK~~igknHpeFst~~QQDA~EFllfLl~ki~~n~rs~~--~nptd~frF~ve~Rv~C~~c~kVrYs~~~~~~i 459 (763)
T KOG0944|consen 382 GISPLMFKALIGKNHPEFSTNRQQDAQEFLLFLLEKIRENSRSSL--PNPTDLFRFEVEDRVSCLGCRKVRYSYESEYLI 459 (763)
T ss_pred CcCHHHHHHHHcCCCccccchhhhhHHHHHHHHHHHHhhcccccC--CCHHHHHHhhhhhhhhhhccccccccchhheee
Confidence 5778878777763 679999999999999999999987654432 578899999999999999999999999999999
Q ss_pred eeeecCCC------CHHHHHhhccceEEecCCCcccccccC-eeeceeeEEeccCCCeEEEEEeeEEEecccCeeeeccc
Q 037461 337 QLDVKGCR------DVYASFDKYVEVERLEGDNKYHAEQYG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKIND 409 (1077)
Q Consensus 337 ~L~v~~~~------sL~esL~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vLiI~LkRF~~d~~~~~~~Ki~~ 409 (1077)
+|+|+... ++.+||+.|+.+.+.+ |.|..|| +..|.|...|.+||++|+||++||.| .....+|+..
T Consensus 460 ~lpv~~~~~v~~~v~~~~cleaff~pq~~d----f~s~ac~~K~~a~kt~~~ksfP~yLiiqv~rf~~--~dw~pkKld~ 533 (763)
T KOG0944|consen 460 QLPVPMTNEVREKVPISACLEAFFEPQVDD----FWSTACGEKKGATKTTRFKSFPDYLIIQVGRFTL--QDWVPKKLDV 533 (763)
T ss_pred EeeccccccccccCCHHHHHHHhcCCcchh----hhhHhhcCccccccccccccCCceEEEEeeEEEe--cCceeeeecc
Confidence 99998643 8999999999994444 8899997 78899999999999999999999998 5678899999
Q ss_pred eEeeCccccccc
Q 037461 410 RYEFPLQLDLDR 421 (1077)
Q Consensus 410 ~v~FP~~LdL~~ 421 (1077)
.++.|++||++.
T Consensus 534 ~iempe~ldls~ 545 (763)
T KOG0944|consen 534 SIEMPEELDLSS 545 (763)
T ss_pred ceecchhhchhh
Confidence 999999999964
No 29
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.3e-37 Score=337.02 Aligned_cols=235 Identities=36% Similarity=0.584 Sum_probs=201.3
Q ss_pred ecccCCcccchhhhhHHHhhhHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccchhhhhhccCCccccccc
Q 037461 200 GLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDSSVATKELTKSFGWDTYDSFMQ 279 (1077)
Q Consensus 200 GL~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~l~~~Lq~Lf~~l~~s~~~v~~~~l~~s~~~~~~~~~~Q 279 (1077)
||.|.|||||+||+||+|++ .|
T Consensus 1 Gl~N~~n~Cy~ns~lq~l~~----------------------------------------------------------~q 22 (255)
T cd02257 1 GLNNLGNTCYLNSVLQALFS----------------------------------------------------------EQ 22 (255)
T ss_pred CccccCcchHHhHHHHHHHH----------------------------------------------------------HH
Confidence 89999999999999999999 69
Q ss_pred ccHHHHHHHHHHHHHHHhcC--------CccccccccccceEEeeEEEeeeeeeecceeeeeeeeeeeecC----CCCHH
Q 037461 280 HDVQELNRVLSEKLEDKMKG--------TVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKG----CRDVY 347 (1077)
Q Consensus 280 qDa~Efl~~Lld~Le~e~~~--------~~~~~~i~~lF~G~~~~~i~C~~C~~~s~~~E~f~~L~L~v~~----~~sL~ 347 (1077)
|||+||+..+++.|+.++.. ....+.+.++|.|.+.+.+.|..|+..+.....+..++|+++. ..+|+
T Consensus 23 ~Da~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~c~~c~~~~~~~~~~~~l~l~~~~~~~~~~~l~ 102 (255)
T cd02257 23 QDAHEFLLFLLDKLHEELKKSSKRTSDSSSLKSLIHDLFGGKLESTIVCLECGHESVSTEPELFLSLPLPVKGLPQVSLE 102 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccccCCchhhhhcccEEeeEEECCCCCCCccCcccceeEEeeccCCCCCCCcHH
Confidence 99999999999999999876 3346789999999999999999998877777777777777765 47999
Q ss_pred HHHhhccceEEecCCCcccccccC---eeeceeeEEeccCCCeEEEEEeeEEEecccCeeeeccceEeeCcccccccccC
Q 037461 348 ASFDKYVEVERLEGDNKYHAEQYG---LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRENG 424 (1077)
Q Consensus 348 esL~~~~~~E~l~g~n~y~C~~c~---~~~a~k~~~i~~lP~vLiI~LkRF~~d~~~~~~~Ki~~~v~FP~~LdL~~~~~ 424 (1077)
++|+.++..|.+++ +.|..|+ .+.+.++..|.++|++|+|+|+||.++.. ....|+++++.||.++++ .
T Consensus 103 ~~l~~~~~~e~~~~---~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~-~~~~k~~~~v~~~~~l~~----~ 174 (255)
T cd02257 103 DCLEKFFKEEILEG---DNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNED-GTKEKLNTKVSFPLELDL----S 174 (255)
T ss_pred HHHHHhhhhhccCC---CCcccCCCCcccceeEEEecccCCceeEEEeeceeeccc-cccccCCCeEeCCCcccC----c
Confidence 99999999999987 4566664 77889999999999999999999998753 567899999999999999 5
Q ss_pred CCCCC----CcCcCCCccEEEEEEEEeeecc-CCceEEEEEEeCCCCCEEEEeCceeeEecHHHHHHHhcCCCCCCCCCC
Q 037461 425 KYLSP----DADRSVRNLYTLHSVLVHSGGV-HGGHYYAFIRPTLSDQWYKFDDERVTKEDLKRALEEQYGGEEELPQTN 499 (1077)
Q Consensus 425 ~yl~~----~~~~~~~~~Y~L~gVVvH~Gs~-~~GHY~ayvr~~~~~~Wy~fnD~~Vt~vs~~evl~~~~Gg~~~~~~~~ 499 (1077)
.++.. .........|+|+|||+|.|+. ++|||+||+|...+++||+|||+.|++++.++++.. +
T Consensus 175 ~~~~~~~~~~~~~~~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~~~~~--~--------- 243 (255)
T cd02257 175 PYLSEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEVLEF--G--------- 243 (255)
T ss_pred cccccccccccccCCCccEEEEEEEEEecCCCCCcCeEEEEeCCCCCceEEEeccccEEcCHHHhhhc--c---------
Confidence 66532 2334456789999999999965 999999999997569999999999999999998642 1
Q ss_pred CCCCCCCccccCCCcEEEEEEE
Q 037461 500 PGFNNTPFKFTKYSNAYMLVYI 521 (1077)
Q Consensus 500 ~~~~~~~~~~~~~~~AYmLfY~ 521 (1077)
....+||||||+
T Consensus 244 ----------~~~~~~yll~Y~ 255 (255)
T cd02257 244 ----------SLSSSAYILFYE 255 (255)
T ss_pred ----------CCCCceEEEEEC
Confidence 123689999995
No 30
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-37 Score=365.28 Aligned_cols=298 Identities=30% Similarity=0.489 Sum_probs=254.3
Q ss_pred cccceeecccCCcccchhhhhHHHhhhHHHHHHhccCCCC-CCCCC-CCCHHHHHHHHHHHHhcCC--Ccccchhhhhhc
Q 037461 194 KETGYVGLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTT-ENDMP-SGSIPLALQSLFYKLQYSD--SSVATKELTKSF 269 (1077)
Q Consensus 194 ~~~g~vGL~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~~~~-~~~~~-~~~l~~~Lq~Lf~~l~~s~--~~v~~~~l~~s~ 269 (1077)
...|+.||.|+|+||+||++||+|.+.+..+...+..... +...+ ..++.+++.++|..++... .+++|..+....
T Consensus 157 ~~~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~~~~~~~~l~~~~~~~~~~~~s~~~~~~~sp~~~l~~~ 236 (492)
T KOG1867|consen 157 TALGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSKEPSSSGSSCLVCDLDRLFQALYSGHNRTPYSPFELLNLV 236 (492)
T ss_pred eeecccccccccHHHHHHHHHHHhhccchhhccchhhhcccCCCCCCCcchhhhhhhhhhHhhcCCCCCCcChHHHHHHH
Confidence 4568899999999999999999999988888776643322 33333 5789999999999999865 567777666554
Q ss_pred c--CCcccccccccHHHHHHHHHHHHHHHhc--------CC---ccccccccccceEEeeEEEeeeeeeecceeeeeeee
Q 037461 270 G--WDTYDSFMQHDVQELNRVLSEKLEDKMK--------GT---VVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDL 336 (1077)
Q Consensus 270 ~--~~~~~~~~QqDa~Efl~~Lld~Le~e~~--------~~---~~~~~i~~lF~G~~~~~i~C~~C~~~s~~~E~f~~L 336 (1077)
- -+.+.++.|||++||+..+++.++.+.+ .. ...+++...|.|.+.+.+.|..|+..|...++|++|
T Consensus 237 ~k~~~~~~g~~Qqda~eF~~~~~~~~~~~~~~~~k~~~~~~~~~~c~~iv~~~F~G~L~~~v~c~~c~~~S~~~dpf~di 316 (492)
T KOG1867|consen 237 WKHSPNLAGYEQQDAHEFLIALLDRLHREKDDCGKSLIASQSNKQCPCIVHTIFSGTLQSDVTCQTCGSKSTTYDPFMDI 316 (492)
T ss_pred HHhCcccccccccchHHHHHHhcccccccccccccccccccCCcccccccceeecceeccceeehhhcceeeeccCccce
Confidence 2 2466779999999999999999998871 11 136789999999999999999999999999999999
Q ss_pred eeeecCC----------CCHHHHHhhccceEEecCCCcccccccC-eeeceeeEEeccCCCeEEEEEeeEEEecccCeee
Q 037461 337 QLDVKGC----------RDVYASFDKYVEVERLEGDNKYHAEQYG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMV 405 (1077)
Q Consensus 337 ~L~v~~~----------~sL~esL~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vLiI~LkRF~~d~~~~~~~ 405 (1077)
+|+++.. .++.+++..+...+.+..+.++.|..|+ ++.+.|+..+.++|.+|.+||+||++.......
T Consensus 317 sL~i~~~~~~~~~~~~~~~~~~cl~~~~~~~~~~~~~~~~c~~c~~~~~~~kql~~~~lP~~l~~~lkRfe~~~~~~~~- 395 (492)
T KOG1867|consen 317 SLDIPDQFTSSSVRSPELTLLDCLDRFTRSEQLGKDSKYKCSSCKSKQESTKQLTIRKLPAVLCLHLKRFEHSATGARE- 395 (492)
T ss_pred eeecchhccCcccccchhhhhhhhhhhhhhhhcCcccccccCCcccccccccccccccCCceeeeeecccccccccccc-
Confidence 9999744 5699999999999998888999999997 789999999999999999999999987665555
Q ss_pred eccceEeeCcccccccccCCCCCCCc---CcCCCccEEEEEEEEeeeccCCceEEEEEEeCCCCCEEEEeCceeeEecHH
Q 037461 406 KINDRYEFPLQLDLDRENGKYLSPDA---DRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDLK 482 (1077)
Q Consensus 406 Ki~~~v~FP~~LdL~~~~~~yl~~~~---~~~~~~~Y~L~gVVvH~Gs~~~GHY~ayvr~~~~~~Wy~fnD~~Vt~vs~~ 482 (1077)
|+.+.+.||..|+| .+|+..+. .+..+..|+|.|||+|+|+.++|||+||.|. .+.||+|||+.|+.++.+
T Consensus 396 ki~~~v~fp~~l~m----~p~~~~~~~~~~~~~~~~Y~L~AVV~H~G~~~SGHY~aY~r~--~~~~~~~dDs~v~~~s~~ 469 (492)
T KOG1867|consen 396 KIDSYVSFPVLLNM----KPYCSSEKLKSQDNPDHLYELRAVVVHHGTVGSGHYVAYRRQ--SGGWFKCDDSTVTKVSEE 469 (492)
T ss_pred ccCcccccchhhcC----CccccccccccCCCCCceEEEEEEEEeccCCCCCceEEEEEe--CCCcEEEcCeEEEEeeHH
Confidence 99999999999999 88887532 2245689999999999999999999999999 689999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCCCCCCCccccCCCcEEEEEEEecc
Q 037461 483 RALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRES 524 (1077)
Q Consensus 483 evl~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~AYmLfY~R~~ 524 (1077)
+|++ +.||+|||.+..
T Consensus 470 eVl~--------------------------~~aylLFY~~~~ 485 (492)
T KOG1867|consen 470 EVLS--------------------------SQAYLLFYTQEQ 485 (492)
T ss_pred Hhhh--------------------------chhhheehhHHh
Confidence 9975 489999998764
No 31
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.8e-36 Score=329.78 Aligned_cols=236 Identities=20% Similarity=0.259 Sum_probs=193.1
Q ss_pred cccCCccccceeecccCCcccchhhhhHHHhhhHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccchhhhh
Q 037461 188 WSYDSKKETGYVGLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDSSVATKELTK 267 (1077)
Q Consensus 188 ~~~dsk~~~g~vGL~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~l~~~Lq~Lf~~l~~s~~~v~~~~l~~ 267 (1077)
++++..+.|+|+||.|.|.|||+||+||+|+++|+||+.+.+.. .......|++++|+.||..
T Consensus 5 fdf~~~n~t~~~gl~~~~~~~y~n~~lq~~~~~~~~~~~~~~~~--~~~~~~~~l~~el~~lfs~--------------- 67 (268)
T cd02672 5 FDFEFYNKTNYAGLENHITNSYCNSLLQLLYFIPPFRNFTAIIL--VACPKESCLLCELGYLFST--------------- 67 (268)
T ss_pred ccccccccccccccccCCccchHHHHHHHHHhcHHHHHHHHhhc--ccCCcCccHHHHHHHHHHH---------------
Confidence 56777889999999999999999999999999999999855443 3455568999999999910
Q ss_pred hccCCcccccccccHHHHHHHHHHHHHHHhcCCccccccccccceEEeeEEEeeeeeeecceeeeeeeeeeeecC-----
Q 037461 268 SFGWDTYDSFMQHDVQELNRVLSEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKG----- 342 (1077)
Q Consensus 268 s~~~~~~~~~~QqDa~Efl~~Lld~Le~e~~~~~~~~~i~~lF~G~~~~~i~C~~C~~~s~~~E~f~~L~L~v~~----- 342 (1077)
=.|-|.+.|++.+..+..++. ..|+..+.+.++|++|+|+++.
T Consensus 68 -------------~iq~F~~fll~~i~~~~~~~~-------------------~~C~~~s~~~~~~~~LsLpip~~~~~~ 115 (268)
T cd02672 68 -------------LIQNFTRFLLETISQDQLGTP-------------------FSCGTSRNSVSLLYTLSLPLGSTKTSK 115 (268)
T ss_pred -------------HHHHHHHHHHHHHHHHhcccC-------------------CCCCceeeccccceeeeeecCcccccc
Confidence 135588889999876543321 5789999999999999999985
Q ss_pred CCCHHHHHhhccceEEecCCCcccccccC-eeeceeeEEeccCCC----eEEEEEeeEEEeccc-----CeeeeccceEe
Q 037461 343 CRDVYASFDKYVEVERLEGDNKYHAEQYG-LQDAKKGVLFIDFPP----VLQLQLKRFEYDFMR-----DTMVKINDRYE 412 (1077)
Q Consensus 343 ~~sL~esL~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~----vLiI~LkRF~~d~~~-----~~~~Ki~~~v~ 412 (1077)
..++.+||+.+++.|.. +++.|+.|+ ++.|.|+..|.++|+ ||+||||||.++... ....|++..+.
T Consensus 116 ~~sl~~cL~~~~~~E~~---~~~~C~~C~~~~~a~k~~~i~~lP~~L~~VL~i~lkrf~~~~~~~~~~~~~~~~~~~~v~ 192 (268)
T cd02672 116 ESTFLQLLKRSLDLEKV---TKAWCDTCCKYQPLEQTTSIRHLPDILLLVLVINLSVTNGEFDDINVVLPSGKVMQNKVS 192 (268)
T ss_pred CCCHHHHHHHHhhhhhc---ccccccccCcccccEEEEEeecCCCcccceEEEEEeccChhhcccCcceeEEEecCCeec
Confidence 35999999999998854 568999997 789999999999999 999999999865422 23568889999
Q ss_pred eCcccccccccCCCCCCCcCcCCCccEEEEEEEEeeec-cCCceEEEEEEeCC----CCCEEEEeCceeeEecH
Q 037461 413 FPLQLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGG-VHGGHYYAFIRPTL----SDQWYKFDDERVTKEDL 481 (1077)
Q Consensus 413 FP~~LdL~~~~~~yl~~~~~~~~~~~Y~L~gVVvH~Gs-~~~GHY~ayvr~~~----~~~Wy~fnD~~Vt~vs~ 481 (1077)
||...++ ..+.... .....+|+|+|||+|.|+ .++|||+||||... +++||.|||..|+++++
T Consensus 193 f~~~~~~----~~~~~~~--~~~~~~Y~L~gvV~hig~~~~~GHyva~vk~~~~~~~~~~WylFND~~V~~vs~ 260 (268)
T cd02672 193 PKAIDHD----KLVKNRG--QESIYKYELVGYVCEINDSSRGQHNVVFVIKVNEESTHGRWYLFNDFLVTPVSE 260 (268)
T ss_pred ccccccc----hhhhccC--CCCCceEEEEEEEEEecCCCCCCcEEEEEEccCCCCCCCcEEEecCeEEEEcCc
Confidence 9998877 4443332 234578999999999996 48999999999864 57899999999999865
No 32
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-36 Score=345.44 Aligned_cols=147 Identities=37% Similarity=0.569 Sum_probs=124.6
Q ss_pred HHHHHhhccceEEecCCCcccccccCe----------------------------eeceeeEEeccCCCeEEEEEeeEEE
Q 037461 346 VYASFDKYVEVERLEGDNKYHAEQYGL----------------------------QDAKKGVLFIDFPPVLQLQLKRFEY 397 (1077)
Q Consensus 346 L~esL~~~~~~E~l~g~n~y~C~~c~~----------------------------~~a~k~~~i~~lP~vLiI~LkRF~~ 397 (1077)
++.||.+|++.|.|.|+|++.|+.|.+ ..|+|.+.|..+||||+||||||..
T Consensus 680 vq~CL~nFT~~E~Ls~~N~~~CEnCtk~~n~~~r~k~~~n~~~sk~s~~es~~~~t~akk~~li~~aPpVltihlKrf~q 759 (877)
T KOG1873|consen 680 VQRCLKNFTKVEILSGDNKWACENCTKNLNLQRREKRGLNEDNSKYSFNESEYRNTYAKKKVLINKAPPVLTIHLKRFFQ 759 (877)
T ss_pred HHHHHHhhhhhhhcccccchhhhhhhccccccchhhccCCCCcccccccchhhhhhhhheeeecccCCceeeehHhhhhh
Confidence 899999999999999999999999853 1146778899999999999999987
Q ss_pred ecccCeeeeccceEeeCcccccccccCCCCCCC---cCcCCCccEEEEEEEEeeeccCCceEEEEEEeC-----------
Q 037461 398 DFMRDTMVKINDRYEFPLQLDLDRENGKYLSPD---ADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPT----------- 463 (1077)
Q Consensus 398 d~~~~~~~Ki~~~v~FP~~LdL~~~~~~yl~~~---~~~~~~~~Y~L~gVVvH~Gs~~~GHY~ayvr~~----------- 463 (1077)
+. .++..|.+..+.|++.+|| .+|+..- .+......|+|+|||.|+|++.+|||+||+|..
T Consensus 760 ~~-~~~~~k~~~h~~f~E~~dL----~~~~~~rc~~l~~~~s~~Yrl~gvvehsgtm~~ghyvayv~~~t~~~~~~~~~~ 834 (877)
T KOG1873|consen 760 DI-RGRLSKLNKHVDFKEFEDL----LDYMDFRCSHLDEPSSFVYRLAGVVEHSGTMSYGHYVAYVRGGTFLDLSAPSNS 834 (877)
T ss_pred hh-hchhhcccccchHHHHHHH----HHHhhhhccccCCcchhhhhhccceeccccccCCcchhhhhccchhhccCcccc
Confidence 64 4458899999999999999 5665432 122245689999999999999999999999932
Q ss_pred ---------CCCCEEEEeCceeeEecHHHHHHHhcCCCCCCCCCCCCCCCCCccccCCCcEEEEEEEec
Q 037461 464 ---------LSDQWYKFDDERVTKEDLKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRE 523 (1077)
Q Consensus 464 ---------~~~~Wy~fnD~~Vt~vs~~evl~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~AYmLfY~R~ 523 (1077)
..++||...|..|.++++++|+. ..||||||+|.
T Consensus 835 ~~~~sd~~~~~~~Wy~iSDs~VrevS~d~vLk--------------------------seAYlLFYERI 877 (877)
T KOG1873|consen 835 KDFESDAGIPSGRWYYISDSIVREVSLDEVLK--------------------------SEAYLLFYERI 877 (877)
T ss_pred ccchhccCCCCcceEEecchheecccHHHHhh--------------------------hhhhhhheecC
Confidence 25699999999999999999986 38999999983
No 33
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-33 Score=309.80 Aligned_cols=217 Identities=21% Similarity=0.326 Sum_probs=179.6
Q ss_pred eeecccCCcccchhhhhHHHhhhHHHHHHhccCCCC---CCCCCCCCHHHHHHHHHHHHhcCC-----Ccccchhhhhhc
Q 037461 198 YVGLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTT---ENDMPSGSIPLALQSLFYKLQYSD-----SSVATKELTKSF 269 (1077)
Q Consensus 198 ~vGL~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~~~~---~~~~~~~~l~~~Lq~Lf~~l~~s~-----~~v~~~~l~~s~ 269 (1077)
++||.|+||+||+||++|+|+....+...+...... .-..|..++.|+|.+|...|.... ..++|..|...+
T Consensus 303 ~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~P~~~l~CQl~kll~~mk~~p~~~y~ngi~p~~fk~~i 382 (749)
T COG5207 303 YVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNPLECLFCQLMKLLSKMKETPDNEYVNGISPLDFKMLI 382 (749)
T ss_pred ccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeeecCCchhHHHHHHHHHhhccCCCCccccCCcChhhHHHHH
Confidence 799999999999999999999988776544332211 223466899999999999887643 357788888888
Q ss_pred cC--CcccccccccHHHHHHHHHHHHHHHhcCCccccccccccceEEeeEEEeeeeeeecceeeeeeeeeeeecCC---C
Q 037461 270 GW--DTYDSFMQHDVQELNRVLSEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGC---R 344 (1077)
Q Consensus 270 ~~--~~~~~~~QqDa~Efl~~Lld~Le~e~~~~~~~~~i~~lF~G~~~~~i~C~~C~~~s~~~E~f~~L~L~v~~~---~ 344 (1077)
|. ..|..+.||||+||+.+||+.|.+... +.....|.++|...+...+.|..|+..+...++...+++...+. .
T Consensus 383 gq~h~eFg~~~QQDA~EFLlfLL~kirk~~~-S~~~~~It~lf~Fe~e~rlsC~~C~~v~ySye~~~~i~i~le~n~E~~ 461 (749)
T COG5207 383 GQDHPEFGKFAQQDAHEFLLFLLEKIRKGER-SYLIPPITSLFEFEVERRLSCSGCMDVSYSYESMLMICIFLEGNDEPQ 461 (749)
T ss_pred cCCchhhhhhhhhhHHHHHHHHHHHHhhccc-hhcCCCcchhhhhhhcceecccccccccccccceEEEEeecccCcchh
Confidence 74 578899999999999999999987543 33456788999999999999999999999999999999988765 4
Q ss_pred CHHHHHhhccceEEecCCCcccccccC-eeeceeeEEeccCCCeEEEEEeeEEEecccCeeeeccceEeeCcc--ccccc
Q 037461 345 DVYASFDKYVEVERLEGDNKYHAEQYG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQ--LDLDR 421 (1077)
Q Consensus 345 sL~esL~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vLiI~LkRF~~d~~~~~~~Ki~~~v~FP~~--LdL~~ 421 (1077)
++.++++.|+.+.+++ |.|+.|+ +..|.+...|++||++|+||..||.+. .....|+..++..... +++++
T Consensus 462 di~~~v~a~f~pdtiE----~~CenCk~K~~a~~k~~~kslPk~LIlq~~R~~lq--ny~v~kls~pi~~~~D~m~~~~s 535 (749)
T COG5207 462 DIRKSVEAFFLPDTIE----WSCENCKGKKKASRKPFIKSLPKYLILQVGRYSLQ--NYKVEKLSDPIEMRSDDMIKLGS 535 (749)
T ss_pred hHHHHHHheECcccee----eehhhhcCcccccccchhhccCceeEEecceeecc--ceeehhccCceEEccccccchhh
Confidence 7999999999999998 9999996 788999999999999999999999864 4456788877776653 66643
No 34
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.5e-31 Score=335.11 Aligned_cols=297 Identities=29% Similarity=0.457 Sum_probs=253.2
Q ss_pred CccccceeecccCCcccchhhhhHHHhhhHHHHHHhccC------CCCCCCCCCCCHHHHHHHHHHHHhcCCC-cccchh
Q 037461 192 SKKETGYVGLKNQGATCYMNSLLQTLFHIPYFRKAVYHM------PTTENDMPSGSIPLALQSLFYKLQYSDS-SVATKE 264 (1077)
Q Consensus 192 sk~~~g~vGL~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~------~~~~~~~~~~~l~~~Lq~Lf~~l~~s~~-~v~~~~ 264 (1077)
.....|.+||.|+||||||||.+|+|.+.+.++.+++.. ...........+..+...+..+++.... ++.+..
T Consensus 240 ~~~~~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~~~~~v~~~~ 319 (842)
T KOG1870|consen 240 SPSERGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSGNKSAVAPTS 319 (842)
T ss_pred CCCcccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccCCccccCchh
Confidence 456789999999999999999999999999999887642 2222333446777888889999988765 577777
Q ss_pred hhhhccC--CcccccccccHHHHHHHHHHHHHHHhcCCc-----------------------------cccccccccceE
Q 037461 265 LTKSFGW--DTYDSFMQHDVQELNRVLSEKLEDKMKGTV-----------------------------VEGTIQQLFEGH 313 (1077)
Q Consensus 265 l~~s~~~--~~~~~~~QqDa~Efl~~Lld~Le~e~~~~~-----------------------------~~~~i~~lF~G~ 313 (1077)
+...++. ..+.++.|||.+||+-+|+|.|++.+.... ..+.+.++|.|.
T Consensus 320 ~~~~~~~~a~~~~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~~~~~~~~~~~~~~~s~i~d~~~~~ 399 (842)
T KOG1870|consen 320 FRTSLASFASEFSGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQEVAAEVWDYHLKRNRSVIVDLFDGT 399 (842)
T ss_pred hhhhhhhccccccCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhhhhHHHHHhhhhhccceeeeeecce
Confidence 7766653 358899999999999999999999875321 235689999999
Q ss_pred EeeEEEeeeeeeecceeeeeeeeeeeecCCCC------------------------------------------------
Q 037461 314 HMNYIECINVDYKSTRKESFYDLQLDVKGCRD------------------------------------------------ 345 (1077)
Q Consensus 314 ~~~~i~C~~C~~~s~~~E~f~~L~L~v~~~~s------------------------------------------------ 345 (1077)
.++.+.|..|+..+..+++|..|+|+++....
T Consensus 400 ~~S~~~c~~C~~~svt~d~f~~Lslp~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~ 479 (842)
T KOG1870|consen 400 YKSTLQCPTCGKVSVTFDPFGYLSLPLPGKEIQKLEVTVPHGDGFRKPGALGVSVAKNGRIRDLLEYLSRTVGLLSWELK 479 (842)
T ss_pred ecccccCccCCCceEEeeccccccccCCCCcccceeEEEecCCCCCChhheeeeccccchHHHHHHHHHHHhccchhhcc
Confidence 99999999999999999999999988862110
Q ss_pred --------------------------------------------------------------------------------
Q 037461 346 -------------------------------------------------------------------------------- 345 (1077)
Q Consensus 346 -------------------------------------------------------------------------------- 345 (1077)
T Consensus 480 ~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~ 559 (842)
T KOG1870|consen 480 PVEILFDCFNKIFAADELKLDSIYSDEELFDYELGVLKVQGSIYAIIVVRFRSRLPRSKGIRSHVSSKLFGLPLLVSVLS 559 (842)
T ss_pred cceeccchhhhhhccCccccccccCCcceEEeecccccccccceEEEEEeeccccccccCcccCCCccccCCcceeeccC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 037461 346 -------------------------------------------------------------------------------- 345 (1077)
Q Consensus 346 -------------------------------------------------------------------------------- 345 (1077)
T Consensus 560 ~~~~t~~~l~~~~~~~~s~~~~~~~~~v~~~~~~~~~~~~~e~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (842)
T KOG1870|consen 560 GAQSTEEDLLSVICHRTSRYSREPPLNVGYGVDDQSLKEVSEQSAESSSSVSRDPSEDDNSDQDLSLECLSEESALRFFQ 639 (842)
T ss_pred CCcccccchhhHHhhcccccCCcCccccccCCCcccccccccccccccccccCCChhHhccccccchhhccCcccccccc
Confidence
Q ss_pred ----------------------------------------------------------HHHHHhhccceEEecCCCcccc
Q 037461 346 ----------------------------------------------------------VYASFDKYVEVERLEGDNKYHA 367 (1077)
Q Consensus 346 ----------------------------------------------------------L~esL~~~~~~E~l~g~n~y~C 367 (1077)
|++|++.|+.+|.|..+++|.|
T Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cl~~F~~~E~L~~~~~w~C 719 (842)
T KOG1870|consen 640 SLESRNKSDSEFEPGSTSIAVDWSPSAKYKYSSSLVSQPPEVEPRGASRSKGSPAPNSLESCLELFSEPETLGKDDRWYC 719 (842)
T ss_pred cccccccccccccCCCceeecccChhhccccccccccccccccccccccccCCCCcccHHHHHHhhcchhcCCccccccC
Confidence 9999999999999999999999
Q ss_pred cccC-eeeceeeEEeccCCCeEEEEEeeEEEecccCeeeeccceEeeCcc-cccccccCCCCCCCcCcCCCccEEEEEEE
Q 037461 368 EQYG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQ-LDLDRENGKYLSPDADRSVRNLYTLHSVL 445 (1077)
Q Consensus 368 ~~c~-~~~a~k~~~i~~lP~vLiI~LkRF~~d~~~~~~~Ki~~~v~FP~~-LdL~~~~~~yl~~~~~~~~~~~Y~L~gVV 445 (1077)
+.|. ++.|.|+..++++|++|+||||||.|.. ....|+.+.++||.. ||+ ++|+..... ..|+|+||.
T Consensus 720 ~~Cke~~~A~Kk~~lwrlPeiLiihLKrF~~~r--~~~~k~~~~v~fPi~~ld~----s~~~~~~~~----~~Y~l~av~ 789 (842)
T KOG1870|consen 720 PQCKELRQATKKLDLWRLPEILIIHLKRFQYSR--ESSSKVKTKVEFPLGSLDL----SEFVVNKEQ----VLYDLYAVG 789 (842)
T ss_pred hHHHHHHHHhhhhhhhhCCceEEEEeecceeec--hhhhhhCccccCCCcCCCc----chhhccCcc----ceeeeeeee
Confidence 9996 7899999999999999999999999964 445899999999998 999 788765432 899999999
Q ss_pred EeeeccCCceEEEEEEeCCCCCEEEEeCceeeEecHHHHHHHhcCCCCCCCCCCCCCCCCCccccCCCcEEEEEEEecc
Q 037461 446 VHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDLKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRES 524 (1077)
Q Consensus 446 vH~Gs~~~GHY~ayvr~~~~~~Wy~fnD~~Vt~vs~~evl~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~AYmLfY~R~~ 524 (1077)
+|+|.+.+|||+||.|...+++||.|||+.|++++++++. ...||+|||+|++
T Consensus 790 nHyG~l~~GHYta~~k~~~~~~w~~fdDs~v~~~~~~~i~--------------------------t~~aY~Lfy~r~~ 842 (842)
T KOG1870|consen 790 NHYGQLSGGHYTAYAKNVGDGKWYLFDDSSVSEVDEDEID--------------------------TEAAYVLFYRRLD 842 (842)
T ss_pred cccCCcCCcchhhhhhcCCCCceEEeccccCCCCChhhcc--------------------------cccceEEEEEecC
Confidence 9999999999999999987999999999999999888773 2489999999974
No 35
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=9.7e-31 Score=282.40 Aligned_cols=185 Identities=22% Similarity=0.370 Sum_probs=145.6
Q ss_pred ecccCCc-ccchhhhhHHHhhhHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccchhhhhhccCCcccccc
Q 037461 200 GLKNQGA-TCYMNSLLQTLFHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDSSVATKELTKSFGWDTYDSFM 278 (1077)
Q Consensus 200 GL~N~Gn-TCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~l~~~Lq~Lf~~l~~s~~~v~~~~l~~s~~~~~~~~~~ 278 (1077)
|..|.+| +|||-|+|=+||. .
T Consensus 1 g~~~~~~~~cy~d~~~~~~f~----------------------------------------------------------~ 22 (241)
T cd02670 1 GAQNHCNVSCYLDALLFAMFA----------------------------------------------------------E 22 (241)
T ss_pred CCccccCceeehHHHHHHHHH----------------------------------------------------------H
Confidence 7899999 9999999999988 6
Q ss_pred cccHHHHHHHHHHHHHHHhcCCccccccccccceEEeeEEEeeeeeeecceeeeeeeeeeeec---CCCCHHHHHhhccc
Q 037461 279 QHDVQELNRVLSEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVK---GCRDVYASFDKYVE 355 (1077)
Q Consensus 279 QqDa~Efl~~Lld~Le~e~~~~~~~~~i~~lF~G~~~~~i~C~~C~~~s~~~E~f~~L~L~v~---~~~sL~esL~~~~~ 355 (1077)
|||+.||+..|+++|+..+-. ..-++|.|--...-. . +.-.|.++.|.++.+ +..+|++||+.|++
T Consensus 23 q~D~~e~~~~l~~~~~~~~~~-----~~~~~~~~g~~~~~~-----~-~~~~e~~l~l~ip~~~~~~~~tLedcLe~~~~ 91 (241)
T cd02670 23 QQDPEEFFNFITDKLLMPLLE-----PKVDIIHGGKKDQDD-----D-KLVNERLLQIPVPDDDDGGGITLEQCLEQYFN 91 (241)
T ss_pred hcCHHHHHHHHHHHHhhhhhh-----HHHHHHhcCcccccc-----c-cccccceEEeecccCCCCCcCCHHHHHHHHhc
Confidence 999999999999999864422 233555543211100 0 233567777777764 35699999999998
Q ss_pred eEEecCCCcccccccCeeeceeeEEeccCCCeEEEEEeeEEEecccCeeeeccceEeeCcccccccccCCCCCCCc----
Q 037461 356 VERLEGDNKYHAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRENGKYLSPDA---- 431 (1077)
Q Consensus 356 ~E~l~g~n~y~C~~c~~~~a~k~~~i~~lP~vLiI~LkRF~~d~~~~~~~Ki~~~v~FP~~LdL~~~~~~yl~~~~---- 431 (1077)
.|. |.++|++|+||||||.|+. +...|+++.|.||..||| .+|+....
T Consensus 92 ~e~----------------------i~~lP~vLiIhLKRF~~~~--~~~~Kl~~~I~fP~~Ldl----~~~~~~~~~~~~ 143 (241)
T cd02670 92 NSV----------------------FAKAPSCLIICLKRYGKTE--GKAQKMFKKILIPDEIDI----PDFVADDPRACS 143 (241)
T ss_pred hhh----------------------hhhCCCeEEEEEEccccCC--CcceeCCcEECCCCcCCc----hhhccccccccc
Confidence 775 7899999999999999975 567899999999999999 66654431
Q ss_pred ----------------CcCCCccEEEEEEEEeeec-cCCceEEEEEEeCC-----------CCCEEEEeCceeeEecH
Q 037461 432 ----------------DRSVRNLYTLHSVLVHSGG-VHGGHYYAFIRPTL-----------SDQWYKFDDERVTKEDL 481 (1077)
Q Consensus 432 ----------------~~~~~~~Y~L~gVVvH~Gs-~~~GHY~ayvr~~~-----------~~~Wy~fnD~~Vt~vs~ 481 (1077)
.......|+|+|||+|+|+ .++|||+||+|... ++.||+|||..|+.+..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G~s~~sGHYva~vr~~~~~~~~~~~~~~~~~W~~FDD~~v~~~~~ 221 (241)
T cd02670 144 KCQLECRVCYDDKDFSPTCGKFKLSLCSAVCHRGTSLETGHYVAFVRYGSYSLTETDNEAYNAQWVFFDDMADRDGVS 221 (241)
T ss_pred ccccccccccccccccCCCCCeEEEEEEEEEeCCCCCCCcCeEEEEECCcccccccccCCCCCeEEEecCcccccccc
Confidence 1234568999999999995 89999999999875 37999999999887654
No 36
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=99.97 E-value=4.3e-30 Score=289.30 Aligned_cols=266 Identities=25% Similarity=0.336 Sum_probs=226.4
Q ss_pred eecccCCcccchhhhhHHHhhhHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHh-cCC-CcccchhhhhhccCC--cc
Q 037461 199 VGLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQ-YSD-SSVATKELTKSFGWD--TY 274 (1077)
Q Consensus 199 vGL~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~l~~~Lq~Lf~~l~-~s~-~~v~~~~l~~s~~~~--~~ 274 (1077)
+||.|.+++||+||+||+||++|++|+.+++.. ++....|++|+|+-||.+|. .+. ..+.+..|.++|++. ..
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~---~c~~e~cL~cELgfLf~ml~~~~~g~~cq~sNflr~l~~~~~a~ 77 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL---ECPKEFCLLCELGFLFDMLDSKAKGINCQASNFLRALSWIPEAA 77 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc---CCCccccHHHHHHHHHHHhhhhcCCCcChHHHHHHHHhcCHHHH
Confidence 599999999999999999999999999998866 25567899999999999999 654 456778899999874 34
Q ss_pred cccccccHHHHHHHHHHHHHHHhcCCcc-------------ccccccccceEEeeEEEeeeeeeecceeeeeeeeeeeec
Q 037461 275 DSFMQHDVQELNRVLSEKLEDKMKGTVV-------------EGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVK 341 (1077)
Q Consensus 275 ~~~~QqDa~Efl~~Lld~Le~e~~~~~~-------------~~~i~~lF~G~~~~~i~C~~C~~~s~~~E~f~~L~L~v~ 341 (1077)
..+.|+|+++|+++|+++|+.++..... ...|.++|+....+.++|..|+.++.+.+....+.|..+
T Consensus 78 ~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~c~~c~~~~~~~~~~~~~~l~yp 157 (295)
T PF13423_consen 78 ALGLQQDIQSLNRFLLEQLSMELLTFKPDIFHTSENSSSSPESSISQLFGTSFETTIRCTSCGHESVKESSTLVLDLPYP 157 (295)
T ss_pred hcchhHHHHHHHHHHHHHHhHHHHhcCcccccccccccCCCcchHHHHhCcceeeeecccccCCeEEeecceeeeeccCC
Confidence 5567999999999999999988865443 567899999999999999999999999998888888876
Q ss_pred C---CCCHHHHHhhccceEEecCCCcccccccC-eeeceeeEEeccCCCeEEEEEeeEEEecccCeeeeccceEeeCccc
Q 037461 342 G---CRDVYASFDKYVEVERLEGDNKYHAEQYG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQL 417 (1077)
Q Consensus 342 ~---~~sL~esL~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vLiI~LkRF~~d~~~~~~~Ki~~~v~FP~~L 417 (1077)
. ..++.+.|+.++..|.... ..|+.|+ .+.+..+..|.++|+||.|.++|...+ .-. ..|....+.+|..+
T Consensus 158 ~~~~~~tf~~~Le~sl~~e~~~~---a~C~~C~~~~~~~~~r~i~~LPpVL~In~~~~~~~-~~w-~~~~~~~~~ip~~i 232 (295)
T PF13423_consen 158 PSNSNVTFSQVLEHSLNREQQTR---AWCEKCNKYQPTEQRRTIRSLPPVLSINLNRYSEE-EFW-PKKNWLKIWIPPSI 232 (295)
T ss_pred CCCccchHHHHHHHHHhhccccc---ccccccccccceeeeeeccCCCcEEEEEccCCCcc-ccc-ccccCCceecceee
Confidence 5 4689999999999888875 7899997 467778888999999999999999987 333 77899999999999
Q ss_pred ccccccCCCCCCCc-----CcCCCccEEEEEEEEeee-ccCCceEEEEEEeCC--CCCEEEEeCcee
Q 037461 418 DLDRENGKYLSPDA-----DRSVRNLYTLHSVLVHSG-GVHGGHYYAFIRPTL--SDQWYKFDDERV 476 (1077)
Q Consensus 418 dL~~~~~~yl~~~~-----~~~~~~~Y~L~gVVvH~G-s~~~GHY~ayvr~~~--~~~Wy~fnD~~V 476 (1077)
++ ..++..+. ......+|+|.|+|+|.| +..+|||+|+||... +++||.|||-.|
T Consensus 233 ~~----~~~~~~~~~~~~~~~~~~~~Y~L~~~V~~i~~~~~~~HlVs~vrv~~~~~~~W~lFNDflV 295 (295)
T PF13423_consen 233 NL----PHFIADDSQSDLEGESGIFKYELRSMVCHIGDSIESGHLVSLVRVGPSDDSQWYLFNDFLV 295 (295)
T ss_pred ec----cccccccccccccCCCCceEEEEEEEEEEecCCCCCCceEEEEEcCCCCCCcEEEECcEeC
Confidence 99 55554432 245678999999999999 488999999999863 369999999765
No 37
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.4e-30 Score=310.19 Aligned_cols=286 Identities=27% Similarity=0.431 Sum_probs=228.8
Q ss_pred cccceeecccCCcccchh--hhhHHHhhhHHHHHHhccCCCCCCCC--CCCCHHHHHHHHHHHHhcC---CCcccchhhh
Q 037461 194 KETGYVGLKNQGATCYMN--SLLQTLFHIPYFRKAVYHMPTTENDM--PSGSIPLALQSLFYKLQYS---DSSVATKELT 266 (1077)
Q Consensus 194 ~~~g~vGL~N~GnTCYmN--SvLQ~L~~~p~fr~~l~~~~~~~~~~--~~~~l~~~Lq~Lf~~l~~s---~~~v~~~~l~ 266 (1077)
....+-|..|.+++|+.| |+.|.++.+..+|.+.+...+..... ....+...+..+|...... ...+.|..+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~p~~~~ 307 (587)
T KOG1864|consen 228 ANERVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTSLKRSYIIKEELLTCLLDLFSSISSRKKLVGRISPTRFI 307 (587)
T ss_pred ccccccCccccCccccccchhhHHHHHhhhhhcccccchhhcccchhhhhHHHHHHhhhhccchhhhcccccccCcchhh
Confidence 345678999999999999 99999999999997776544321111 1122333444444433332 2345566555
Q ss_pred hhcc--CCcccccccccHHHHHHHHHHHHHHHhcCCc--------------------------------cccccccccce
Q 037461 267 KSFG--WDTYDSFMQHDVQELNRVLSEKLEDKMKGTV--------------------------------VEGTIQQLFEG 312 (1077)
Q Consensus 267 ~s~~--~~~~~~~~QqDa~Efl~~Lld~Le~e~~~~~--------------------------------~~~~i~~lF~G 312 (1077)
..+. ...|..++||||+||+..+++.+++-..... ....+..+|.|
T Consensus 308 ~~~~~~~~~f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~v~~lf~g 387 (587)
T KOG1864|consen 308 SDLIKENELFTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTSAASWTNKGHHKSLRENWVSKLFQG 387 (587)
T ss_pred hhhhhcCCccCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccccccccccccccccchhHHHHhhcC
Confidence 5543 3568899999999999999999866442110 23467899999
Q ss_pred EEeeEEEeeeeeeecceeeeeeeeeeeec--CCCCHHHHHhhccceEEecCCCccccccc-CeeeceeeEEeccCCCeEE
Q 037461 313 HHMNYIECINVDYKSTRKESFYDLQLDVK--GCRDVYASFDKYVEVERLEGDNKYHAEQY-GLQDAKKGVLFIDFPPVLQ 389 (1077)
Q Consensus 313 ~~~~~i~C~~C~~~s~~~E~f~~L~L~v~--~~~sL~esL~~~~~~E~l~g~n~y~C~~c-~~~~a~k~~~i~~lP~vLi 389 (1077)
++...+.|.+|+..+.+.+.|.|+++++. ...++..+++.|..+|.+.|+|+|.|+.| +.|+|.+.+.++++|.+|+
T Consensus 388 ~l~~et~Clsc~t~T~~de~f~D~~~~v~~de~~si~~~l~~~~~~e~l~g~nky~c~~c~s~qeae~~l~~k~lp~~L~ 467 (587)
T KOG1864|consen 388 ILTNETRCLSCETITSRDEGFLDLSVAVEIDENTSITNLLKSFSSTETLSGENKYSCENCCSLQEAERRLKIKKLPYVLT 467 (587)
T ss_pred eeeeeeeeccccccccccccccccceeccccccccHHHHHHHhcchhhccCCCcccccccCchhhHHHhccccCCcceee
Confidence 99999999999999999999999999998 68999999999999999999999999887 5899999999999999999
Q ss_pred EEEeeEEEecccCeeeeccceEeeCcccccccccCCCCCCCcCcCCCccEEEEEEEEeee-ccCCceEEEEEEeCCCCCE
Q 037461 390 LQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSG-GVHGGHYYAFIRPTLSDQW 468 (1077)
Q Consensus 390 I~LkRF~~d~~~~~~~Ki~~~v~FP~~LdL~~~~~~yl~~~~~~~~~~~Y~L~gVVvH~G-s~~~GHY~ayvr~~~~~~W 468 (1077)
||||||.|+.......|+...+.+|.++.+ ...+.+. ......|.|+|||||.| +.+.|||+||+|.. +-.|
T Consensus 468 l~Lkrfk~~~~~~~~~kl~~~v~~plel~l----~~~~~~~--~~~~~~Y~L~avVvH~G~~p~~GHYia~~r~~-~~nW 540 (587)
T KOG1864|consen 468 LHLKRFKYSEQQNRYTKLLYRVVFPLELRL----KDTLKDD--NNPDRKYDLVAVVVHLGSTPNRGHYVAYVKSL-DFNW 540 (587)
T ss_pred eehhccccccccccccccccccccccceee----ccccccc--cCccceeeEEEEEEeccCCCCCcceEEEEeeC-CCCc
Confidence 999999998877778999999999999998 3333222 12247899999999999 79999999999995 3349
Q ss_pred EEEeCceeeEecHHHHHH
Q 037461 469 YKFDDERVTKEDLKRALE 486 (1077)
Q Consensus 469 y~fnD~~Vt~vs~~evl~ 486 (1077)
+.|||+.|+.++.+.|.+
T Consensus 541 l~fdD~~V~~~s~~~v~~ 558 (587)
T KOG1864|consen 541 LLFDDDNVEPISEEPVSE 558 (587)
T ss_pred eecccccccccCcchhhh
Confidence 999999999999988843
No 38
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=6.7e-26 Score=247.41 Aligned_cols=300 Identities=21% Similarity=0.321 Sum_probs=222.4
Q ss_pred ceeecccCCcccchhhhhHHHhhhHHHHHHhccCCCCCCC--CCCCCHHHHHHHHHHHHhcC--------------CC--
Q 037461 197 GYVGLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTTEND--MPSGSIPLALQSLFYKLQYS--------------DS-- 258 (1077)
Q Consensus 197 g~vGL~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~--~~~~~l~~~Lq~Lf~~l~~s--------------~~-- 258 (1077)
-.+|+.|-||-|||||+||+|..|++|-+.+..++..... ..+..++.++..+......- ..
T Consensus 27 ~Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~~~~~~~~~~stp~lda~~~~~~df~n~~~~k~~r~N~~~~~~~~~ 106 (420)
T KOG1871|consen 27 DPRGSINKCNICFMNSILQALLYCSPFYNLLELIKRADGTVKEGSTPLLDASRPASSDFNNDSDAKLPRKNSLRVPEHVV 106 (420)
T ss_pred CCccccccceeEeeHHHHHHHHhCccHHHHHHhhhhhcCceecccchhHHHHHHHHhhccccchhhhhhhccCCcccccc
Confidence 3489999999999999999999999999988776632111 12234444554444433210 00
Q ss_pred -------------cccchhhhhhc-c---CCcccccccccHHHHHHHHHHHHHHHhcCCc--------------------
Q 037461 259 -------------SVATKELTKSF-G---WDTYDSFMQHDVQELNRVLSEKLEDKMKGTV-------------------- 301 (1077)
Q Consensus 259 -------------~v~~~~l~~s~-~---~~~~~~~~QqDa~Efl~~Lld~Le~e~~~~~-------------------- 301 (1077)
++-|..+...+ + ......+.|.||.||+..++|.|++++-...
T Consensus 107 ~~ses~~~d~~~dav~~d~~~~~l~t~~~~e~~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~e~t~~~~i~~~n 186 (420)
T KOG1871|consen 107 EKSESNKSDLQGDAVKPDPIYLDLLTMSRFESLQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPNDEFTPRGLINNGN 186 (420)
T ss_pred chhhhhhhcccCccccCCchhhhcccCCchhhccccccccHHHHHHHHHhhhhHHHHhhhhhhcCCcccccccccccccc
Confidence 11111111111 1 1234557899999999999999999873100
Q ss_pred -----------------------------------cccccccccceEEeeEEEeeeeeeecceeeeeeeeeeee--cCCC
Q 037461 302 -----------------------------------VEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDV--KGCR 344 (1077)
Q Consensus 302 -----------------------------------~~~~i~~lF~G~~~~~i~C~~C~~~s~~~E~f~~L~L~v--~~~~ 344 (1077)
...+|.++|+|++++...-.+ .+++...+||..|+|++ .+..
T Consensus 187 ~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~~-nkeS~tlqPF~tlqldiq~~~i~ 265 (420)
T KOG1871|consen 187 LCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQPS-NKESATLQPFFTLQLDIQSEKIH 265 (420)
T ss_pred cccccchhhcccccCchhhhcCCcccCccCCCCCcccCcHHHhhccccccceeccc-cccccccCccceeeeeeeccccC
Confidence 245789999999999876544 44568899999999999 5678
Q ss_pred CHHHHHhhccceEEecCCCcccccccCeeeceeeEEeccCCCeEEEEEeeEEEecccCeeeeccceEeeCccccccccc-
Q 037461 345 DVYASFDKYVEVERLEGDNKYHAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDREN- 423 (1077)
Q Consensus 345 sL~esL~~~~~~E~l~g~n~y~C~~c~~~~a~k~~~i~~lP~vLiI~LkRF~~d~~~~~~~Ki~~~v~FP~~LdL~~~~- 423 (1077)
+++++|+.+...|.+.+ |.-...+-..|.+++.+.+||++|++||+||.|.. ++...|+-+.+++|-++.++...
T Consensus 266 sv~~ales~~~re~lp~---~st~s~~eV~~s~q~~leklp~vlilhlkrF~ye~-tgg~~k~~K~i~~~~~l~i~~~~~ 341 (420)
T KOG1871|consen 266 SVQDALESLVARESLPG---YSTKSGQEVEASSQTTLEKLPPVLILHLKRFVYEK-TGGARKLGKKIEYPWTLKISKNCF 341 (420)
T ss_pred CHHHHhhccChhhcccc---eecCCCCeechhhhhhHhhcchhhhhhhhHHHHHh-ccchhhhchhhhccceeeechhhh
Confidence 99999999999999987 55444445688999999999999999999999864 67788999999999998884211
Q ss_pred CCCCCCCcCcCCCccEEEEEEEEeee-ccCCceEEEEEEeCCCCCEEEEeCceeeEecHHHHHHHhcCCCCCCCCCCCCC
Q 037461 424 GKYLSPDADRSVRNLYTLHSVLVHSG-GVHGGHYYAFIRPTLSDQWYKFDDERVTKEDLKRALEEQYGGEEELPQTNPGF 502 (1077)
Q Consensus 424 ~~yl~~~~~~~~~~~Y~L~gVVvH~G-s~~~GHY~ayvr~~~~~~Wy~fnD~~Vt~vs~~evl~~~~Gg~~~~~~~~~~~ 502 (1077)
.+.+.... ......|+|.+|+.|.| ++..|||.+-+....-+.|+++||..|..+..++|++-
T Consensus 342 s~gvk~~~-~~~~~~yks~~vvyhtgtsatvghYl~dv~~s~~~gw~rIDD~~i~~v~q~dv~~~--------------- 405 (420)
T KOG1871|consen 342 SQGLKIRI-LIATRPYKSLAVVYHTGTSATVGHYLEDVSRSVPSGWQRIDDALILFVAQEDVEKV--------------- 405 (420)
T ss_pred ccccchhh-hccccccceEEEEEecccccccCceEEeeeecccCceeEeccceeeeccHhhhccc---------------
Confidence 11221111 23455799999999999 68999999999998788999999999999999999641
Q ss_pred CCCCccccCCCcEEEEEEEecc
Q 037461 503 NNTPFKFTKYSNAYMLVYIRES 524 (1077)
Q Consensus 503 ~~~~~~~~~~~~AYmLfY~R~~ 524 (1077)
..+.+||+|.|+|.+
T Consensus 406 -------t~~r~~yllyY~~~d 420 (420)
T KOG1871|consen 406 -------TGSRTPYLLYYIEAD 420 (420)
T ss_pred -------cCccchheeEeeecC
Confidence 123589999999853
No 39
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=9e-26 Score=252.82 Aligned_cols=295 Identities=25% Similarity=0.362 Sum_probs=218.7
Q ss_pred eecccCCcccchhhhhHHHhhhHHHHHHhccCCCCC--CC--CCCCCHHHHHHHHHHHHhcCCCcccchhhhhhcc----
Q 037461 199 VGLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTTE--ND--MPSGSIPLALQSLFYKLQYSDSSVATKELTKSFG---- 270 (1077)
Q Consensus 199 vGL~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~--~~--~~~~~l~~~Lq~Lf~~l~~s~~~v~~~~l~~s~~---- 270 (1077)
+||.|+|||||||+.+|||...|+++..+-...... +. .....+..+++.+|+.|+.+ .++.|..+...+.
T Consensus 106 ~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t~~~a~~i~~~mR~~f~~~~~~-~~v~pi~llqtl~~~~P 184 (473)
T KOG1872|consen 106 VGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDTWERRRRISIETRTCFRPLCEK-GAVAPINLLQTLSSQYP 184 (473)
T ss_pred ccccchhHHHHhhhhhhhhhcCccCcchhhccchhccCCchhhhhhhHHHHHHHHHHhhhcc-CCcchHHHHHHHHHHhH
Confidence 699999999999999999999999988775433110 11 11356778999999999998 8888877766553
Q ss_pred ----CCcccccccccHHHHHHHHHHHHHHHhcCCcc----ccccccccceEEeeEEEeeeeeeecce--eeeeeeeeeee
Q 037461 271 ----WDTYDSFMQHDVQELNRVLSEKLEDKMKGTVV----EGTIQQLFEGHHMNYIECINVDYKSTR--KESFYDLQLDV 340 (1077)
Q Consensus 271 ----~~~~~~~~QqDa~Efl~~Lld~Le~e~~~~~~----~~~i~~lF~G~~~~~i~C~~C~~~s~~--~E~f~~L~L~v 340 (1077)
|.....++||||.|++..++-.++........ ...+..+|++.+.+...|.+-+..... .|.|..|+.-+
T Consensus 185 qfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~~~~~~~~~d~~f~~~~~~t~~~~e~e~~~~~~~~E~~~~L~c~i 264 (473)
T KOG1872|consen 185 QFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATEAPCLEAEAAAGFGAEFSTTMSCSEGEDEGGGAGRELVDQLKCII 264 (473)
T ss_pred HHHHHhhhhhHHHHHHhHhHHHhhhheeccccccccccchhHHHHHhhccccccceeeccCcccccccccccccccceEE
Confidence 23344578999999999999999887754332 235778899999999999887766544 78888888888
Q ss_pred cCC-CCHHHHHhhccceEEecCCCcccccccCee-eceeeEEeccCCCeEEEEEeeEEEecccCeeeeccceEeeCcccc
Q 037461 341 KGC-RDVYASFDKYVEVERLEGDNKYHAEQYGLQ-DAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLD 418 (1077)
Q Consensus 341 ~~~-~sL~esL~~~~~~E~l~g~n~y~C~~c~~~-~a~k~~~i~~lP~vLiI~LkRF~~d~~~~~~~Ki~~~v~FP~~Ld 418 (1077)
... ..+...|+.-++.+.-. ..+.-|.. ...|...|.++|.+|+|+..||.|....+...|+-..|.||..||
T Consensus 265 ~~~~~~~k~Gl~~~~~e~~~K-----~s~~lgr~a~y~k~~~isrlP~ylTvq~vrf~~k~k~~~~akil~~V~fP~~ld 339 (473)
T KOG1872|consen 265 NKTVHDMRFGLKSGLSEEIQK-----ISSILGRPAAYQKVMYISRLPEYLTVQEVRFFSKAKIMVVAKILNAVNFPKDLD 339 (473)
T ss_pred eeeechhhhhhhhhhhhhhhc-----cCcccCCChHHHHHhHhhcCcccceEEEEEEEeccccchHHHHHHhccChhhhh
Confidence 543 23455554443322110 11111211 235667799999999999999999888888889999999999998
Q ss_pred cccccCCCCCCCc-----------------------------------------------CcCC-CccEEEEEEEEeee-
Q 037461 419 LDRENGKYLSPDA-----------------------------------------------DRSV-RNLYTLHSVLVHSG- 449 (1077)
Q Consensus 419 L~~~~~~yl~~~~-----------------------------------------------~~~~-~~~Y~L~gVVvH~G- 449 (1077)
. ...++++- ..+. ...|+|.|||.|.|
T Consensus 340 ~----~d~ct~el~~k~~~~r~k~r~~edkk~~~~~~~k~~~~~~~~~~~~~e~~~~~~~~~s~~~g~y~l~~vithkgr 415 (473)
T KOG1872|consen 340 Q----QDLCTPELKKKLLCRRKKHRKVEDKKKEEDVMPKVKGAQERLKEVPLEGMYNKSGGKSRNSGLYDLQLVITHKGR 415 (473)
T ss_pred H----HHhhCHHhhcCccchHHHHHHHHhcCCchhhcccccCcCcccccccccchhccccccccccceeeeeEeeecccc
Confidence 8 33333210 0112 56899999999999
Q ss_pred ccCCceEEEEEEeCCCCCEEEEeCceeeEecHHHHHHHhcCCCCCCCCCCCCCCCCCccccCCCcEEEEEEEec
Q 037461 450 GVHGGHYYAFIRPTLSDQWYKFDDERVTKEDLKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRE 523 (1077)
Q Consensus 450 s~~~GHY~ayvr~~~~~~Wy~fnD~~Vt~vs~~evl~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~AYmLfY~R~ 523 (1077)
+..+|||+|++|.. .+.|++|||+.|+-+..+.++ ...||.+ +.+||+|+|.-.
T Consensus 416 ss~sghy~aw~r~s-~~~w~~fdd~~vs~v~~e~i~-~lsgggd------------------~~~ayvllyk~~ 469 (473)
T KOG1872|consen 416 SSKSGHYVAWNRVS-EDKWGHFDDDMVSFVLGETIL-SLSGGGD------------------WHSAYVLLYKAR 469 (473)
T ss_pred ccCCCcceEEEecc-CCceeecccccccccccccee-eecCCCc------------------cchhhheeeccc
Confidence 78999999999997 669999999999999776664 3455543 468999999643
No 40
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=99.89 E-value=5.5e-23 Score=205.26 Aligned_cols=129 Identities=29% Similarity=0.593 Sum_probs=113.5
Q ss_pred CCcEEEEEEccccccCCCeeecCcEEECCeeEEEEEEeCCCC-----CCceEEEEEecCCCCCCCCceEEEEEEEEEEee
Q 037461 53 PSSRFTWRIENFSRLNTKKHYSEIFIVGGFKWRVLIFPKGNN-----VDHLSMYLDVADSSSLPYGWSRYAQFSLAVINQ 127 (1077)
Q Consensus 53 ~~~~~tw~I~nfS~l~~~~~~Sp~F~vGG~~WrIll~P~Gn~-----~~~lSiyL~~~~~~~~~~~W~~~a~f~l~Lln~ 127 (1077)
.+++|+|+|+|||.+ ++.++||+|.+||++|+|++||+|+. .++||+||+|.+... ..+|++.|+|+|+|+|+
T Consensus 1 ~~~~~~~~I~~~S~l-~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~~-~~~w~i~a~~~~~l~~~ 78 (137)
T cd03772 1 SEATFSFTVERFSRL-SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAESD-STSWSCHAQAVLRIINY 78 (137)
T ss_pred CCcEEEEEECCcccC-CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcCC-CCCCeEEEEEEEEEEcC
Confidence 368999999999999 68999999999999999999999953 379999999976543 34899999999999999
Q ss_pred cCCcceeeecceeecCCCCCCCcccccccccccCCCCCCcccccceeeeEEEEEEe
Q 037461 128 IHSKYSVRKDTQHQFNARESDWGFTSFMPLGELYDPNRGYLVNDTLIVEAEVIVRR 183 (1077)
Q Consensus 128 ~~~~~~~~~~~~h~F~~~~~dwGf~~Fi~l~~L~~~~~gfl~nD~l~Ie~~V~V~~ 183 (1077)
.++..+..+...|.|.+...+|||.+||+|++|.++.+|||.||+++|+|.|++..
T Consensus 79 ~~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~ 134 (137)
T cd03772 79 KDDEPSFSRRISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADA 134 (137)
T ss_pred CCCcccEEEeeeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeC
Confidence 86555556666788988888999999999999988889999999999999998865
No 41
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=99.89 E-value=3.8e-23 Score=205.52 Aligned_cols=124 Identities=40% Similarity=0.717 Sum_probs=110.4
Q ss_pred EEEEEEccccccCCCeeecCcEEECCeeEEEEEEeCCCC-CCceEEEEEecCCCC----CCCCceEEEEEEEEEEeecCC
Q 037461 56 RFTWRIENFSRLNTKKHYSEIFIVGGFKWRVLIFPKGNN-VDHLSMYLDVADSSS----LPYGWSRYAQFSLAVINQIHS 130 (1077)
Q Consensus 56 ~~tw~I~nfS~l~~~~~~Sp~F~vGG~~WrIll~P~Gn~-~~~lSiyL~~~~~~~----~~~~W~~~a~f~l~Lln~~~~ 130 (1077)
+|+|+|+|||.+ ++.+.||+|.||||.|+|++||+|+. .+++|+||++.+... .+.+|.++|+|+|.|+||.++
T Consensus 2 ~f~w~I~~fS~~-~~~~~S~~F~vGG~~W~l~~yP~G~~~~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~l~n~~~~ 80 (134)
T cd03775 2 SFTWRIKNWSEL-EKKVHSPKFKCGGFEWRILLFPQGNSQTGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALVISNPGDP 80 (134)
T ss_pred cEEEEECCcccC-CcceeCCCEEECCeeEEEEEeCCCCCCCCeEEEEEEecCcccccccCCCCCeEEEEEEEEEEcCCCC
Confidence 699999999998 58999999999999999999999986 489999999976543 257899999999999999888
Q ss_pred cceeeecceeecCCCCCCCcccccccccccCCC----CCCcccccceeeeEEEE
Q 037461 131 KYSVRKDTQHQFNARESDWGFTSFMPLGELYDP----NRGYLVNDTLIVEAEVI 180 (1077)
Q Consensus 131 ~~~~~~~~~h~F~~~~~dwGf~~Fi~l~~L~~~----~~gfl~nD~l~Ie~~V~ 180 (1077)
..+....+.|.|+....+|||.+||++++|.+| ..|||+||+++|+++|+
T Consensus 81 ~~~~~~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~ 134 (134)
T cd03775 81 SIQLSNVAHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR 134 (134)
T ss_pred ccceEccceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence 766767778999988899999999999999754 57999999999999884
No 42
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=99.84 E-value=8.4e-21 Score=206.59 Aligned_cols=275 Identities=22% Similarity=0.221 Sum_probs=211.0
Q ss_pred CccccceeecccCCcccchhhhhHHHhhhHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHhcCC---Ccccchhhhhh
Q 037461 192 SKKETGYVGLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSD---SSVATKELTKS 268 (1077)
Q Consensus 192 sk~~~g~vGL~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~l~~~Lq~Lf~~l~~s~---~~v~~~~l~~s 268 (1077)
+....|+|||.|+.++-|.|++||+|.+.+++|++++.-.. ..+....+...|..+.+.+|..+ ..++|.++.++
T Consensus 128 ~tYLpG~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~~n--~~d~~~~lv~rl~~l~rklw~~r~fk~hvSphe~lqa 205 (442)
T KOG2026|consen 128 STYLPGFVGLNNIKANDYANAVLQALSHVVPLRNYFLLEEN--YFDNLTELVQRLGELIRKLWNPRNFKGHVSPHEFLQA 205 (442)
T ss_pred CcceeeeeccchhhhHHHHHHHHHHHhccchhhhhhccccc--ccchhHHHHHHHHHHHHHhcChhhhcccCCHHHHHHH
Confidence 44678999999999999999999999999999999986421 12334567788899999999864 68999999887
Q ss_pred cc---CCcccccccccHHHHHHHHHHHHHHHhcCCcc-ccccccccceEEeeEEEeee----eeeecceeeeeeeeeeee
Q 037461 269 FG---WDTYDSFMQHDVQELNRVLSEKLEDKMKGTVV-EGTIQQLFEGHHMNYIECIN----VDYKSTRKESFYDLQLDV 340 (1077)
Q Consensus 269 ~~---~~~~~~~~QqDa~Efl~~Lld~Le~e~~~~~~-~~~i~~lF~G~~~~~i~C~~----C~~~s~~~E~f~~L~L~v 340 (1077)
.. .+.+..+.|.|+-||+.+||+.|+..+.++.. .++|+..|+|.++....-.. -..+.....+|+.|.|++
T Consensus 206 V~~~s~k~f~i~~q~DpveFlswllntlhs~l~~~k~~~SIi~~~fqG~~ri~k~~~~~~~~~~~~~i~~~~Fl~LtLDL 285 (442)
T KOG2026|consen 206 VMKLSKKRFRIGQQSDPVEFLSWLLNTLHSDLRGSKKASSIIHKSFQGEVRIVKEKQGEASENENKEISVMPFLYLTLDL 285 (442)
T ss_pred HHHHhhhheecCCCCCHHHHHHHHHHHHHHHhCCCCCchhHhhHhhcceEEeeeeccccccccccceEEEEeeEEEEecC
Confidence 63 57888999999999999999999999998774 48999999999987654333 112234567899999999
Q ss_pred cCCCC--------------HHHHHhhccceEEecCCCcccccccCeeeceeeEEeccCCCeEEEEEeeEEEecccCeeee
Q 037461 341 KGCRD--------------VYASFDKYVEVERLEGDNKYHAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVK 406 (1077)
Q Consensus 341 ~~~~s--------------L~esL~~~~~~E~l~g~n~y~C~~c~~~~a~k~~~i~~lP~vLiI~LkRF~~d~~~~~~~K 406 (1077)
|...- |-+.|..|-....-+ --+...| ++..+.++|++|++|++||.- +..-..|
T Consensus 286 P~~plfkD~~e~niiPQV~l~~lL~Kf~g~t~~e--------~~~~~~~-~rf~l~k~P~ylifh~~rF~k--Nn~f~ek 354 (442)
T KOG2026|consen 286 PPPPLFKDVMEKNIIPQVALFDLLKKFDGETVTE--------VVTPKLA-MRFRLTKLPRYLIFHMKRFKK--NNFFKEK 354 (442)
T ss_pred CCCCcccchhhhcccccchHHHHHHHhcCceeee--------ecchhhh-hheeeecCCceEEEEeeeccc--cCccccc
Confidence 86543 555665554322211 1112234 788899999999999999973 3456789
Q ss_pred ccceEeeC-cccccccccCCCCCCCcC-cCCCccEEEEEEEEeeeccCCceEEEEEEeCCCCCEEEEeCceeeEecHHHH
Q 037461 407 INDRYEFP-LQLDLDRENGKYLSPDAD-RSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDLKRA 484 (1077)
Q Consensus 407 i~~~v~FP-~~LdL~~~~~~yl~~~~~-~~~~~~Y~L~gVVvH~Gs~~~GHY~ayvr~~~~~~Wy~fnD~~Vt~vs~~ev 484 (1077)
+.+-++|| ..+|+ .+.+..... ...-..|.|.|-++|. ..-|||...|++..+++||..+|-.|++...+-+
T Consensus 355 NpTl~~f~~~~~~~----~~~~~~~~~~~~~~~~~~~~~N~i~~--~e~~~~riqi~~~~s~kW~eiqdl~v~e~~~qmi 428 (442)
T KOG2026|consen 355 NPTLVEFPYSEVDI----LHVLDRLKAVNHKVTQYSLVANAIHE--DEDGNFRIQIYDNSSEKWYEIQDLHVTERLPQMI 428 (442)
T ss_pred CCceeeccCCccch----hhhhhhcccccCccccccchhhhhcC--cccCceEEEEEeCCCcceEEecccchhhhhhHHH
Confidence 99999999 55666 333322211 1122689999999998 6789999999999999999999999999877655
Q ss_pred H
Q 037461 485 L 485 (1077)
Q Consensus 485 l 485 (1077)
.
T Consensus 429 ~ 429 (442)
T KOG2026|consen 429 F 429 (442)
T ss_pred H
Confidence 3
No 43
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=99.81 E-value=1.2e-19 Score=181.76 Aligned_cols=126 Identities=29% Similarity=0.428 Sum_probs=104.8
Q ss_pred CcEEEEEEccccccC---CCeeecCcEEECCe---eEEEEEEeCCC---CCCceEEEEEecCCCCCCCCceEEEEEEEEE
Q 037461 54 SSRFTWRIENFSRLN---TKKHYSEIFIVGGF---KWRVLIFPKGN---NVDHLSMYLDVADSSSLPYGWSRYAQFSLAV 124 (1077)
Q Consensus 54 ~~~~tw~I~nfS~l~---~~~~~Sp~F~vGG~---~WrIll~P~Gn---~~~~lSiyL~~~~~~~~~~~W~~~a~f~l~L 124 (1077)
..+|+|+|+|||.++ ++.+.|++|.+||+ +|+|++||+|+ +.+++|+||++.+. ..|.+.|+|+|.|
T Consensus 4 ~~~~~w~I~~fS~~~~~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~~~~~~~iSlyL~l~~~----~~~~v~a~f~~~l 79 (139)
T cd03774 4 KFCYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKFKFSI 79 (139)
T ss_pred EEEEEEEECCchhhhhcCCCEEECCCeecCCcCCceEEEEEeCCCCCCCCCCeEEEEEEEccC----CCCcEEEEEEEEE
Confidence 458999999999863 56899999999995 99999999996 34899999999653 2357999999999
Q ss_pred EeecCCcce-eeecceeecCCCCCCCcccccccccccCCCCCCcccccceeeeEEEEEEee
Q 037461 125 INQIHSKYS-VRKDTQHQFNARESDWGFTSFMPLGELYDPNRGYLVNDTLIVEAEVIVRRV 184 (1077)
Q Consensus 125 ln~~~~~~~-~~~~~~h~F~~~~~dwGf~~Fi~l~~L~~~~~gfl~nD~l~Ie~~V~V~~~ 184 (1077)
+|+.++... ......+.|.. ..+|||.+|+++++|.++.+|||.||+++|+|+|+|+++
T Consensus 80 ~n~~~~~~~~~~~~~~~~f~~-~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~~ 139 (139)
T cd03774 80 LNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD 139 (139)
T ss_pred EecCCCeeeeecccCcEeCCC-CCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEcC
Confidence 999876532 22334577864 589999999999999877789999999999999999863
No 44
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=99.80 E-value=2.2e-19 Score=178.08 Aligned_cols=122 Identities=30% Similarity=0.638 Sum_probs=103.5
Q ss_pred CCCcEEEEEEcccccc--CCCeeecCcEEECCeeEEEEEEeCCCC---CCceEEEEEecCCCCCCCCceEEEEEEEEEEe
Q 037461 52 PPSSRFTWRIENFSRL--NTKKHYSEIFIVGGFKWRVLIFPKGNN---VDHLSMYLDVADSSSLPYGWSRYAQFSLAVIN 126 (1077)
Q Consensus 52 ~~~~~~tw~I~nfS~l--~~~~~~Sp~F~vGG~~WrIll~P~Gn~---~~~lSiyL~~~~~~~~~~~W~~~a~f~l~Lln 126 (1077)
++..+++|+|.|||.+ .++.+.|++|.+|||+|+|.+||+|+. .++||+||++.+. ..|.+.++|+|.|+|
T Consensus 2 ~~~~~~~~~I~~fS~~~~~~~~~~S~~F~vgG~~W~i~~yP~G~~~~~~~~lSl~L~l~~~----~~~~~~~~~~l~lln 77 (132)
T cd03773 2 PPYDSATFTLENFSTLRQSADPVYSDPLNVDGLCWRLKVYPDGNGEVRGNFLSVFLELCSG----LGEASKYEYRVEMVH 77 (132)
T ss_pred CCCcccEEEECChhhhhcCCcceeCCCeEeCCccEEEEEECCCCCCCCCCEEEEEEEeecC----CCCceeEEEEEEEEc
Confidence 4567899999999988 346899999999999999999999974 4799999998753 236788899999999
Q ss_pred ecCCcceeeecceeecCCCCCCCcccccccccccCCCCCCcccc--cceeeeEEEE
Q 037461 127 QIHSKYSVRKDTQHQFNARESDWGFTSFMPLGELYDPNRGYLVN--DTLIVEAEVI 180 (1077)
Q Consensus 127 ~~~~~~~~~~~~~h~F~~~~~dwGf~~Fi~l~~L~~~~~gfl~n--D~l~Ie~~V~ 180 (1077)
|.++..+......+.|.. ..+|||.+|+++++|. ++|||.| |+++|+|.|+
T Consensus 78 q~~~~~~~~~~~~~~f~~-~~~wG~~~Fi~~~~L~--~~gfl~~~~D~l~i~~~v~ 130 (132)
T cd03773 78 QANPTKNIKREFASDFEV-GECWGYNRFFRLDLLI--NEGYLLPENDTLILRFSVR 130 (132)
T ss_pred CCCCccceEEeccccccC-CCCcCHHHhccHHHHh--hCCCcCCCCCEEEEEEEEe
Confidence 976666666666788865 5679999999999994 4799999 9999999996
No 45
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=99.75 E-value=2.1e-18 Score=174.75 Aligned_cols=123 Identities=25% Similarity=0.565 Sum_probs=98.6
Q ss_pred cEEEEEEccccccC-------CCeeecCcEEEC--CeeEEEEEEeCCCC---CCceEEEEEecCCCC-CCCCceEEEEEE
Q 037461 55 SRFTWRIENFSRLN-------TKKHYSEIFIVG--GFKWRVLIFPKGNN---VDHLSMYLDVADSSS-LPYGWSRYAQFS 121 (1077)
Q Consensus 55 ~~~tw~I~nfS~l~-------~~~~~Sp~F~vG--G~~WrIll~P~Gn~---~~~lSiyL~~~~~~~-~~~~W~~~a~f~ 121 (1077)
|+|+|+|++||.++ ++.++||+|++| ||.|+|.+||+|+. .++||+||.+.+... ....|.+.|+|+
T Consensus 1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~~~~~~~lsl~L~l~~~~~d~~~~w~~~~~~~ 80 (149)
T cd00270 1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDGTGKGTHLSLFVHVMKGEYDALLEWPFRGKIT 80 (149)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCccccCCccceEE
Confidence 68999999999973 258999999999 99999999999973 379999999876543 245799999999
Q ss_pred EEEEeecCC--cceeeec-----ceeecC-----CCCCCCcccccccccccCCCCCCcccccceeeeEEE
Q 037461 122 LAVINQIHS--KYSVRKD-----TQHQFN-----ARESDWGFTSFMPLGELYDPNRGYLVNDTLIVEAEV 179 (1077)
Q Consensus 122 l~Lln~~~~--~~~~~~~-----~~h~F~-----~~~~dwGf~~Fi~l~~L~~~~~gfl~nD~l~Ie~~V 179 (1077)
|.|+||.++ ..+.... ..+.|. ....+|||.+|+++++|. ..|||+||+++|+|.|
T Consensus 81 ~~l~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~--~~gfl~dD~l~I~~~v 148 (149)
T cd00270 81 LTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLE--SRGYVKDDTLFIKVEV 148 (149)
T ss_pred EEEECCCCccccCceEEEEEcCCchHhhcCCCcccCCCCcCcceEeEHHHhc--cCCCEeCCEEEEEEEE
Confidence 999999874 2222111 123453 245789999999999994 4589999999999987
No 46
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=99.72 E-value=6e-18 Score=170.98 Aligned_cols=124 Identities=22% Similarity=0.435 Sum_probs=97.7
Q ss_pred cEEEEEEccccccC-----CC--eeecCcEEE--CCeeEEEEEEeCCCC---CCceEEEEEecCCCC-CCCCceEEEEEE
Q 037461 55 SRFTWRIENFSRLN-----TK--KHYSEIFIV--GGFKWRVLIFPKGNN---VDHLSMYLDVADSSS-LPYGWSRYAQFS 121 (1077)
Q Consensus 55 ~~~tw~I~nfS~l~-----~~--~~~Sp~F~v--GG~~WrIll~P~Gn~---~~~lSiyL~~~~~~~-~~~~W~~~a~f~ 121 (1077)
|+|.|+|.|||.++ ++ .+.||+|++ |||.|+|.+||+|+. .++||+||.+..... ....|.+.|+|+
T Consensus 1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~~~~~~~lS~~L~l~~~~~d~~l~wpv~a~~~ 80 (147)
T cd03776 1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPEARCPNYISLFVHLMQGENDSHLDWPFQGTIT 80 (147)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCcccCCcccceeE
Confidence 68999999999752 23 488999996 799999999999974 378999999986543 245799999999
Q ss_pred EEEEeecCCcceee-----ecceeecCC-----CCCCCcccccccccccCCCCCCcccccceeeeEEEE
Q 037461 122 LAVINQIHSKYSVR-----KDTQHQFNA-----RESDWGFTSFMPLGELYDPNRGYLVNDTLIVEAEVI 180 (1077)
Q Consensus 122 l~Lln~~~~~~~~~-----~~~~h~F~~-----~~~dwGf~~Fi~l~~L~~~~~gfl~nD~l~Ie~~V~ 180 (1077)
|.|++|.++..++. ....+.|.. ...+|||.+||++++| +..+||+||+++|+|.|.
T Consensus 81 ~~lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~~~G~~~fi~~~~L--e~~~yl~dD~l~I~c~V~ 147 (147)
T cd03776 81 LTLLDQSEPRQNIHETMMSKPELLAFQRPTTDRNPKGFGYVEFAHIEDL--LQRGFVKNDTLLIKIEVN 147 (147)
T ss_pred EEEECCCcccCccEEEEEcCCChHhhcCCCcCCCCCCeeEceeeEHHHh--hhCCCccCCEEEEEEEEC
Confidence 99999976443221 112345652 3468999999999999 456899999999999983
No 47
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=99.71 E-value=4.2e-17 Score=163.20 Aligned_cols=125 Identities=19% Similarity=0.379 Sum_probs=97.7
Q ss_pred cEEEEEEcccccc-C----C--CeeecCcEEEC--CeeEEEEEEeCCCC---CCceEEEEEecCCCC-CCCCceEEEEEE
Q 037461 55 SRFTWRIENFSRL-N----T--KKHYSEIFIVG--GFKWRVLIFPKGNN---VDHLSMYLDVADSSS-LPYGWSRYAQFS 121 (1077)
Q Consensus 55 ~~~tw~I~nfS~l-~----~--~~~~Sp~F~vG--G~~WrIll~P~Gn~---~~~lSiyL~~~~~~~-~~~~W~~~a~f~ 121 (1077)
|+|.|+|+||++. + + ..++||+|+.+ ||.|+|.+||+|++ .+|+|+||.+..... .-..|.+.|+|+
T Consensus 1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wpv~~~~t 80 (147)
T cd03779 1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDGAGKGTHISLFFVIMKGEYDALLPWPFRHKVT 80 (147)
T ss_pred CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCcceEEEEE
Confidence 6899999999965 1 1 36999999998 99999999999975 479999999986432 123799999999
Q ss_pred EEEEeecCCcc-eeeecc---eeecC----CCCCCCcccccccccccCCCCCCcccccceeeeEEE
Q 037461 122 LAVINQIHSKY-SVRKDT---QHQFN----ARESDWGFTSFMPLGELYDPNRGYLVNDTLIVEAEV 179 (1077)
Q Consensus 122 l~Lln~~~~~~-~~~~~~---~h~F~----~~~~dwGf~~Fi~l~~L~~~~~gfl~nD~l~Ie~~V 179 (1077)
|+|++|.+... ...... .+.|. .....||+.+||++++|..+.++||+||+++|+|.|
T Consensus 81 fsLlDq~~~~~~~~~~~~~~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V 146 (147)
T cd03779 81 FMLLDQNNREHVIDAFRPDLSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVV 146 (147)
T ss_pred EEEECCCCCCCCcEeecCCcccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEE
Confidence 99999975332 111111 25675 445579999999999994323599999999999987
No 48
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=99.70 E-value=4.7e-17 Score=163.57 Aligned_cols=125 Identities=19% Similarity=0.375 Sum_probs=99.1
Q ss_pred cEEEEEEccccccC-----CC--eeecCcE--EECCeeEEEEEEeCCCC---CCceEEEEEecCCCCCC-CCceEEEEEE
Q 037461 55 SRFTWRIENFSRLN-----TK--KHYSEIF--IVGGFKWRVLIFPKGNN---VDHLSMYLDVADSSSLP-YGWSRYAQFS 121 (1077)
Q Consensus 55 ~~~tw~I~nfS~l~-----~~--~~~Sp~F--~vGG~~WrIll~P~Gn~---~~~lSiyL~~~~~~~~~-~~W~~~a~f~ 121 (1077)
|+|.|+|++||.++ ++ .+.||+| .+|||+|+|.+||+|.+ .+|||+||.+...+..+ ..|.+.++++
T Consensus 1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wp~~~~~t 80 (148)
T cd03780 1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVT 80 (148)
T ss_pred CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCccccccCcceEEEEE
Confidence 68999999999873 23 7999999 89999999999999974 36999999998653322 4799999999
Q ss_pred EEEEeecCCcce---eeec--ceeecCCC----CCCCcccccccccccCCCCCCcccccceeeeEEE
Q 037461 122 LAVINQIHSKYS---VRKD--TQHQFNAR----ESDWGFTSFMPLGELYDPNRGYLVNDTLIVEAEV 179 (1077)
Q Consensus 122 l~Lln~~~~~~~---~~~~--~~h~F~~~----~~dwGf~~Fi~l~~L~~~~~gfl~nD~l~Ie~~V 179 (1077)
|+|++|.+...+ .... ..+.|... +..||+.+||++++|..++++||+||+++|+|.|
T Consensus 81 fsLlDq~~~~~~~~~~~~~~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v 147 (148)
T cd03780 81 LMLLDQSGKKNHIMETFKADPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAV 147 (148)
T ss_pred EEEECCCCCCCCcceeeecCCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence 999999754322 1111 13557543 4579999999999995444699999999999876
No 49
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=99.70 E-value=4.7e-17 Score=165.65 Aligned_cols=123 Identities=24% Similarity=0.491 Sum_probs=97.5
Q ss_pred cEEEEEEccccccC-------CCeeecCcEEEC--CeeEEEEEEeCCCC---CCceEEEEEecCCCCCC-CCceEEEEEE
Q 037461 55 SRFTWRIENFSRLN-------TKKHYSEIFIVG--GFKWRVLIFPKGNN---VDHLSMYLDVADSSSLP-YGWSRYAQFS 121 (1077)
Q Consensus 55 ~~~tw~I~nfS~l~-------~~~~~Sp~F~vG--G~~WrIll~P~Gn~---~~~lSiyL~~~~~~~~~-~~W~~~a~f~ 121 (1077)
|+|.|+|++||.++ +..+.|++|++| ||.|+|.+||+|+. .++||+||.+...+... ..|.+.|+|+
T Consensus 1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~vs~~l~l~~ge~d~~l~wp~~a~~~ 80 (154)
T cd03781 1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNGSGEGSHLSVYIRVLPGEYDNLLEWPFSHRIT 80 (154)
T ss_pred CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCCCCCCCEEEEEEEEecCCcccccCCceeeEEE
Confidence 68999999999763 257999999999 99999999999964 37999999998754332 4899999999
Q ss_pred EEEEeecCC--c--ceeee-----cceeecC--------CCCCCCcccccccccccCCCCCCcccccceeeeEEE
Q 037461 122 LAVINQIHS--K--YSVRK-----DTQHQFN--------ARESDWGFTSFMPLGELYDPNRGYLVNDTLIVEAEV 179 (1077)
Q Consensus 122 l~Lln~~~~--~--~~~~~-----~~~h~F~--------~~~~dwGf~~Fi~l~~L~~~~~gfl~nD~l~Ie~~V 179 (1077)
|+|++|.++ . .++.. ...+.|. ....+|||..||++++| +..+||+||+++|+|.|
T Consensus 81 ~~llDq~~~~~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~L--e~~~yl~dD~l~Irc~v 153 (154)
T cd03781 81 FTLLDQSDPSLSKPQHITETFTPDPTWKNFQKPSASRLDESTLGFGYPKFISHEDL--KKRNYIKDDAIFLRASV 153 (154)
T ss_pred EEEECCCCCccccCcceEEEEEcCCchhhhcCCcccccCCCCCccchhHeeEHHHH--hhCCcccCCEEEEEEEe
Confidence 999999754 1 11111 1123454 23457999999999999 55799999999999987
No 50
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=99.70 E-value=1.5e-16 Score=154.48 Aligned_cols=123 Identities=42% Similarity=0.756 Sum_probs=101.5
Q ss_pred cEEEEEEccccccCCCeeecCcEEECCeeEEEEEEeCCCC--CCceEEEEEecCCCCCCCCceEEEEEEEEEEeecCCcc
Q 037461 55 SRFTWRIENFSRLNTKKHYSEIFIVGGFKWRVLIFPKGNN--VDHLSMYLDVADSSSLPYGWSRYAQFSLAVINQIHSKY 132 (1077)
Q Consensus 55 ~~~tw~I~nfS~l~~~~~~Sp~F~vGG~~WrIll~P~Gn~--~~~lSiyL~~~~~~~~~~~W~~~a~f~l~Lln~~~~~~ 132 (1077)
++++|+|.+|+...++.+.||.|.+||+.|+|.+||+|+. .+++|+||+|.........|.+.|+|.|.|+|++++.
T Consensus 1 ~~~~~~i~~~~~~~~~~~~S~~f~~~g~~W~l~~~p~~~~~~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 79 (126)
T cd00121 1 GKHTWKIVNFSELEGESIYSPPFEVGGYKWRIRIYPNGDGESGDYLSLYLELDKGESDLEKWSVRAEFTLKLVNQNGGK- 79 (126)
T ss_pred CEEEEEECCCCCCCCcEEECCCEEEcCEeEEEEEEcCCCCCCCCEEEEEEEecCCCCCCCCCcEEEEEEEEEECCCCCc-
Confidence 4799999999995578999999999999999999999973 4799999999876554568999999999999998333
Q ss_pred eeeecceeecC-CCCCCCcccccccccccCCCCCCcccccceeeeEEEE
Q 037461 133 SVRKDTQHQFN-ARESDWGFTSFMPLGELYDPNRGYLVNDTLIVEAEVI 180 (1077)
Q Consensus 133 ~~~~~~~h~F~-~~~~dwGf~~Fi~l~~L~~~~~gfl~nD~l~Ie~~V~ 180 (1077)
...+...+.|. ....+|||..|+++++|.+ .+++.||+++|+|+|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~G~~~fi~~~~l~~--~~~~~~d~l~i~~~v~ 126 (126)
T cd00121 80 SLSKSFTHVFFSEKGSGWGFPKFISWDDLED--SYYLVDDSLTIEVEVK 126 (126)
T ss_pred cceEeccCCcCCCCCCCCChHHeeEHHHhcc--CCcEECCEEEEEEEEC
Confidence 33344445553 6678999999999999954 3348999999999883
No 51
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=99.70 E-value=8.6e-17 Score=167.39 Aligned_cols=127 Identities=21% Similarity=0.400 Sum_probs=99.9
Q ss_pred CCCcEEEEEEccccccC-----CC--eeecCcEEEC--CeeEEEEEEeCCCC---CCceEEEEEecCCCCC-CCCceEEE
Q 037461 52 PPSSRFTWRIENFSRLN-----TK--KHYSEIFIVG--GFKWRVLIFPKGNN---VDHLSMYLDVADSSSL-PYGWSRYA 118 (1077)
Q Consensus 52 ~~~~~~tw~I~nfS~l~-----~~--~~~Sp~F~vG--G~~WrIll~P~Gn~---~~~lSiyL~~~~~~~~-~~~W~~~a 118 (1077)
...|+|.|+|.|||.++ ++ .++||+|++| ||+|+|.+||+|++ ++|||+||.+..++.. -..|.+.+
T Consensus 36 ~~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g~~~~~~iSvyl~L~~ge~D~~L~WP~~~ 115 (186)
T cd03777 36 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ 115 (186)
T ss_pred ccceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCCceeE
Confidence 34799999999999863 23 6999999999 99999999999974 4699999999865422 23799999
Q ss_pred EEEEEEEeecCCccee-----eecceeecC-CC---CCCCcccccccccccCCCCCCcccccceeeeEEEE
Q 037461 119 QFSLAVINQIHSKYSV-----RKDTQHQFN-AR---ESDWGFTSFMPLGELYDPNRGYLVNDTLIVEAEVI 180 (1077)
Q Consensus 119 ~f~l~Lln~~~~~~~~-----~~~~~h~F~-~~---~~dwGf~~Fi~l~~L~~~~~gfl~nD~l~Ie~~V~ 180 (1077)
+|+|+|++|.+....+ .....+.|. +. ..+||+.+||++++| ..++||+||+++|+|.|.
T Consensus 116 ~~tfsLlDQ~~~~~~~~~~~~p~p~~~~F~rp~~~~n~~~G~~~Fi~~~~L--e~~~ylkdD~l~Irv~v~ 184 (186)
T cd03777 116 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVL--ENGTYIKDDTIFIKVIVD 184 (186)
T ss_pred EEEEEEEcCCCccccccceeccCCccccccCCccCCCCCCCchheeEHHHh--ccCCcEeCCEEEEEEEEe
Confidence 9999999996421111 011124575 33 457999999999999 568999999999999885
No 52
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.67 E-value=1.8e-16 Score=187.55 Aligned_cols=305 Identities=16% Similarity=0.207 Sum_probs=205.5
Q ss_pred cccCCccccceeecccCCcccchhhhhHHHhhhHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCC-cccchhhh
Q 037461 188 WSYDSKKETGYVGLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDS-SVATKELT 266 (1077)
Q Consensus 188 ~~~dsk~~~g~vGL~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~l~~~Lq~Lf~~l~~s~~-~v~~~~l~ 266 (1077)
++++....|.|.||.-.+-.-|.||+||.|+++|++|..++... +....|++|+|.-||.+|..+.+ +...++|.
T Consensus 489 FDF~~~NqT~yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~H~----C~~e~CL~CELGFLF~Ml~~S~G~~Cqa~NFl 564 (1118)
T KOG1275|consen 489 FDFQDYNQTTYAGLETDIPNSYCNAMIQLLYFLPPIRSIVLRHI----CTKEFCLLCELGFLFTMLDSSTGDPCQANNFL 564 (1118)
T ss_pred CCCcccccceeeccCCCCchHHHHHHHHHHHhccHHHHHHHcCc----cchhHHHHHHHHHHHHHHhhhcCCccchhHHH
Confidence 35556788999999999999999999999999999999999864 33457999999999999988643 56677777
Q ss_pred hhccCCc-----------c-------cccccc--------------cHHHHHHHHHHHHHHH-hcCCccccccccccceE
Q 037461 267 KSFGWDT-----------Y-------DSFMQH--------------DVQELNRVLSEKLEDK-MKGTVVEGTIQQLFEGH 313 (1077)
Q Consensus 267 ~s~~~~~-----------~-------~~~~Qq--------------Da~Efl~~Lld~Le~e-~~~~~~~~~i~~lF~G~ 313 (1077)
++|.... . +...-| |.+++.+.......+. .-.......+.+.|+-.
T Consensus 565 raf~t~~~a~~LG~vl~d~~~~~~~~~~~liq~~~~~~~set~~~~d~~~~~~~~~s~~~~~~~~~vn~~~~l~q~F~~~ 644 (1118)
T KOG1275|consen 565 RAFRTNPEASALGLVLSDTQISGTVNDDVLIQDAEGFISSETSRHLDCQDCRGLQQSESVDGESFKVNYAPVLQQSFCQE 644 (1118)
T ss_pred HHHhhChHhhhhcccccchhhccccchHHHhhhhhhccchhhhhhhhHHHhhhhhhhhcccCceeeecchhHHHHHhhhH
Confidence 7774110 0 011122 3333333332222111 00111345788999999
Q ss_pred EeeEEEeeeeeeecceeeeeeeeeeeecCCC---------CHHHHHhhccceEEecCCCcccccccCe-eeceeeEEecc
Q 037461 314 HMNYIECINVDYKSTRKESFYDLQLDVKGCR---------DVYASFDKYVEVERLEGDNKYHAEQYGL-QDAKKGVLFID 383 (1077)
Q Consensus 314 ~~~~i~C~~C~~~s~~~E~f~~L~L~v~~~~---------sL~esL~~~~~~E~l~g~n~y~C~~c~~-~~a~k~~~i~~ 383 (1077)
+.....|..|+.++.+......+.|..++.. +..+.|++-+.. ...-+-.|+.|++ +....+..+..
T Consensus 645 ~e~~~~Cg~C~~~~~~~k~l~~~~lsyp~~~~id~~~~~~~F~~iL~R~l~l---~kn~~~~C~~C~k~ep~~q~~~vr~ 721 (1118)
T KOG1275|consen 645 IEKSLRCGECGDEKQKSKSLLRKVLSYPNVLLIDTLAKSNNFVEILKRSLSL---FKNKQAWCETCTKPEPTSQKKNVRS 721 (1118)
T ss_pred HHHhhhcccccchhhhhhhhhheeecCCCccchhhcccccchHHHhhhhhhc---ccccccccccccCCCCccccccccc
Confidence 9999999999998877767666666655321 233444433322 2122257999974 55666777899
Q ss_pred CCCeEEEEEeeEEEecccCe--eeeccceEeeCccccccccc--CCCCC----------CCcCcCCCccEEEEEEEEeee
Q 037461 384 FPPVLQLQLKRFEYDFMRDT--MVKINDRYEFPLQLDLDREN--GKYLS----------PDADRSVRNLYTLHSVLVHSG 449 (1077)
Q Consensus 384 lP~vLiI~LkRF~~d~~~~~--~~Ki~~~v~FP~~LdL~~~~--~~yl~----------~~~~~~~~~~Y~L~gVVvH~G 449 (1077)
+|.+|.|...-+.-...... ..|.-..+-+|..+.|.... +..++ ++-+...-.+|+|.|+|+|.|
T Consensus 722 LPd~L~in~~~~~~~~~~~~a~q~~~~~~vWLP~~~~~~~~k~~~~~v~~~s~~~~~~~~~~d~~~~~vYeL~a~V~~I~ 801 (1118)
T KOG1275|consen 722 LPDCLSINTCLNVHELVDFWARQNKLLEDVWLPEWFHMIISKNKAQLVSTISDLDVSPLPDYDEPSAVVYELDAMVHAIG 801 (1118)
T ss_pred CcceeeeeeeccchhhhhhHHHhhccccccccchheeEEEecccceeeeeeccccCCCCccccCCceEEEEeeeEEEEec
Confidence 99999999877653221111 12455667788887763110 00000 001233347999999999999
Q ss_pred c-cCCceEEEEEEeC--------CCCCEEEEeCceeeEecHHHHHHHhcCCCCCCCCCCCCCCCCCccccCCCcEEEEEE
Q 037461 450 G-VHGGHYYAFIRPT--------LSDQWYKFDDERVTKEDLKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVY 520 (1077)
Q Consensus 450 s-~~~GHY~ayvr~~--------~~~~Wy~fnD~~Vt~vs~~evl~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~AYmLfY 520 (1077)
+ .+.+|.+++||-. .+.+||.|||-.|.+++++|++.- - .++..+-||+|
T Consensus 802 d~~~e~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV~~ite~EAl~~--~-------------------~~WKvP~Il~Y 860 (1118)
T KOG1275|consen 802 DNENEVNLVSPIKVLRPYHVIKPDDSQWYLFNDFLVSEITEEEALHF--D-------------------GPWKVPAILYY 860 (1118)
T ss_pred cCCCccceEEEEEccCcccccCcCcceeEEEcceeeeeCChHHheEe--c-------------------cCccCcEEEEE
Confidence 5 5899999999932 246999999999999999999642 1 23678999999
No 53
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=99.64 E-value=2.1e-16 Score=152.87 Aligned_cols=116 Identities=39% Similarity=0.713 Sum_probs=95.8
Q ss_pred EccccccCC--CeeecCcEEECCeeEEEEEEeCCCCCCceEEEEEecCCCCCC-CCceEEEEEEEEEEeecCCcceeeec
Q 037461 61 IENFSRLNT--KKHYSEIFIVGGFKWRVLIFPKGNNVDHLSMYLDVADSSSLP-YGWSRYAQFSLAVINQIHSKYSVRKD 137 (1077)
Q Consensus 61 I~nfS~l~~--~~~~Sp~F~vGG~~WrIll~P~Gn~~~~lSiyL~~~~~~~~~-~~W~~~a~f~l~Lln~~~~~~~~~~~ 137 (1077)
|+|||+++. ....|+.|.+||++|+|.++|+|+ .+++|+||.|....... .+|+|.|++++.++++.++.......
T Consensus 1 i~nfs~l~~~~~~~~s~~~~~~g~~W~l~~~~~~~-~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
T PF00917_consen 1 IKNFSKLKEGEEYSSSFVFSHGGYPWRLKVYPKGN-GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKSISKRIK 79 (119)
T ss_dssp ETTGGGHHTSEEEEEEEESSTTSEEEEEEEETTES-TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCEEEEEEE
T ss_pred CcccceEeCCCcEECCCeEEECCEEEEEEEEeCCC-cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCcceeeee
Confidence 789999952 234558999999999999999998 78999999999876543 58999999999999998876433333
Q ss_pred ceeecCCCCCCCcccccccccccCCCCCCcccccceeeeEEEEE
Q 037461 138 TQHQFNARESDWGFTSFMPLGELYDPNRGYLVNDTLIVEAEVIV 181 (1077)
Q Consensus 138 ~~h~F~~~~~dwGf~~Fi~l~~L~~~~~gfl~nD~l~Ie~~V~V 181 (1077)
.+.|... .+|||.+|+++++|.++. |+.||+++|+|+|+|
T Consensus 80 -~~~F~~~-~~~g~~~fi~~~~l~~~~--fl~dd~l~ie~~v~I 119 (119)
T PF00917_consen 80 -SHSFNNP-SSWGWSSFISWEDLEDPY--FLVDDSLTIEVEVKI 119 (119)
T ss_dssp -CEEECTT-SEEEEEEEEEHHHHTTCT--TSBTTEEEEEEEEEE
T ss_pred -eeEEeee-cccchhheeEHHHhCccC--CeECCEEEEEEEEEC
Confidence 5888654 789999999999995543 999999999999976
No 54
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=99.63 E-value=1.1e-15 Score=155.93 Aligned_cols=122 Identities=24% Similarity=0.476 Sum_probs=93.0
Q ss_pred EEEEEEccccccC-----CCeeecCcE-EECCeeEEEEEEeCCCC--CCceEEEEEecCCCC-CCCCce-EEEEEEEEEE
Q 037461 56 RFTWRIENFSRLN-----TKKHYSEIF-IVGGFKWRVLIFPKGNN--VDHLSMYLDVADSSS-LPYGWS-RYAQFSLAVI 125 (1077)
Q Consensus 56 ~~tw~I~nfS~l~-----~~~~~Sp~F-~vGG~~WrIll~P~Gn~--~~~lSiyL~~~~~~~-~~~~W~-~~a~f~l~Ll 125 (1077)
+|+|+|.|||.++ +..++||+| .+|||+|+|.+||+|+. .++||+||.+..... ....|. +.|+++|+|+
T Consensus 3 ~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~~~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t~~Ll 82 (167)
T cd03771 3 EAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTESYPGYTGLYFHLCSGENDDVLEWPCPNRQATMTLL 82 (167)
T ss_pred eEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCCCCCCcceEEEEEecCCccccccCcceeEEEEEEEE
Confidence 6899999999984 237999998 99999999999999974 579999999986533 345799 5899999999
Q ss_pred eecCCc---ceeee----cc------------------eeecCC-------CCCCCcccccccccccCCCCCCcccccce
Q 037461 126 NQIHSK---YSVRK----DT------------------QHQFNA-------RESDWGFTSFMPLGELYDPNRGYLVNDTL 173 (1077)
Q Consensus 126 n~~~~~---~~~~~----~~------------------~h~F~~-------~~~dwGf~~Fi~l~~L~~~~~gfl~nD~l 173 (1077)
+|.... .+... .. .+.++. ...+|||..|+++++| ..++||+||++
T Consensus 83 DQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L--~~r~ylk~dtl 160 (167)
T cd03771 83 DQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRL--RRRDFLKGDDL 160 (167)
T ss_pred CCCCcccccCcceEEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHh--ccCCCCcCCEE
Confidence 996311 11111 00 000111 3347999999999999 45779999999
Q ss_pred eeeEEE
Q 037461 174 IVEAEV 179 (1077)
Q Consensus 174 ~Ie~~V 179 (1077)
.|++.+
T Consensus 161 ~i~~~~ 166 (167)
T cd03771 161 IILLDF 166 (167)
T ss_pred EEEEEe
Confidence 999876
No 55
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z
Probab=99.63 E-value=1.5e-15 Score=153.62 Aligned_cols=126 Identities=21% Similarity=0.416 Sum_probs=101.3
Q ss_pred CCCcEEEEEEccccccCC-------CeeecCcEEEC--CeeEEEEEEeCCCC---CCceEEEEEecCCCCCC-CCceEEE
Q 037461 52 PPSSRFTWRIENFSRLNT-------KKHYSEIFIVG--GFKWRVLIFPKGNN---VDHLSMYLDVADSSSLP-YGWSRYA 118 (1077)
Q Consensus 52 ~~~~~~tw~I~nfS~l~~-------~~~~Sp~F~vG--G~~WrIll~P~Gn~---~~~lSiyL~~~~~~~~~-~~W~~~a 118 (1077)
...|+|+|+|.|||++.. ..++||+|+.+ ||+|++.+||+|++ +.|||+|+.+..++..+ ..|.+..
T Consensus 16 ~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g~~~g~~LSly~~l~~Ge~D~~L~WPf~~ 95 (164)
T cd03778 16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ 95 (164)
T ss_pred ccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEecCCcCcccCCceee
Confidence 447999999999998721 37999999997 89999999999974 36899999999887766 6999999
Q ss_pred EEEEEEEeecCCcceeeec--------ceeec-CCCCCCCcccccccccccCCCCCCcccccceeeeEEE
Q 037461 119 QFSLAVINQIHSKYSVRKD--------TQHQF-NARESDWGFTSFMPLGELYDPNRGYLVNDTLIVEAEV 179 (1077)
Q Consensus 119 ~f~l~Lln~~~~~~~~~~~--------~~h~F-~~~~~dwGf~~Fi~l~~L~~~~~gfl~nD~l~Ie~~V 179 (1077)
+++|+|++|.+.. ++... +.++. +..+.+|||..|+++++|.. .+|||+||++.|+|.|
T Consensus 96 ~itl~llDQ~~r~-hi~~~~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~-~~~Yv~dDtlfIk~~V 163 (164)
T cd03778 96 KVTLMLLDQNNRE-HVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEA-KNSYVRDDAIFIKAIV 163 (164)
T ss_pred EEEEEEECCCCCC-cceeEEEcCcchHhcCCCCcccccCcCcceEEEhhHccc-cCCcccCCeEEEEEEE
Confidence 9999999997543 22111 12333 34456799999999999954 3699999999999876
No 56
>smart00061 MATH meprin and TRAF homology.
Probab=99.54 E-value=2.9e-14 Score=132.08 Aligned_cols=93 Identities=29% Similarity=0.515 Sum_probs=80.2
Q ss_pred EEEEEcccccc-CCCeeecCcEEECCeeEEEEEEeCCCCCCceEEEEEecCCCCCCCCceEEEEEEEEEEeecCCcceee
Q 037461 57 FTWRIENFSRL-NTKKHYSEIFIVGGFKWRVLIFPKGNNVDHLSMYLDVADSSSLPYGWSRYAQFSLAVINQIHSKYSVR 135 (1077)
Q Consensus 57 ~tw~I~nfS~l-~~~~~~Sp~F~vGG~~WrIll~P~Gn~~~~lSiyL~~~~~~~~~~~W~~~a~f~l~Lln~~~~~~~~~ 135 (1077)
++|+|+||+.+ .++.+.||+|.+||++|+|.+||+ .+++|+||.|.+....+.+|++.|+|+|.|+|++++.. .
T Consensus 2 ~~~~~~~~~~~~~~~~~~S~~f~~~g~~W~i~~~p~---~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~~~~~--~ 76 (95)
T smart00061 2 LSHTFKNVSRLEEGESYFSPSEEHFNIPWRLKIYRK---NGFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQNGKSL--S 76 (95)
T ss_pred ceeEEEchhhcccCceEeCChhEEcCceeEEEEEEc---CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCCCCEE--e
Confidence 68999999998 467899999999999999999998 47999999998775555589999999999999986543 4
Q ss_pred ecceeecCCCCCCCcccccc
Q 037461 136 KDTQHQFNARESDWGFTSFM 155 (1077)
Q Consensus 136 ~~~~h~F~~~~~dwGf~~Fi 155 (1077)
+...+.|.. ..+|||.+||
T Consensus 77 ~~~~~~F~~-~~~~G~~~fi 95 (95)
T smart00061 77 KKDKHVFEK-PSGWGFSKFI 95 (95)
T ss_pred eeeeEEEcC-CCccceeeEC
Confidence 456788976 7899999986
No 57
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both
Probab=99.28 E-value=8e-12 Score=126.07 Aligned_cols=122 Identities=24% Similarity=0.470 Sum_probs=92.1
Q ss_pred EEEEEEccccccC-----CCeeecCcEEEC-CeeEEEEEEeCCCC----CCceEEEEEecCCCCCC-CCceEE-EEEEEE
Q 037461 56 RFTWRIENFSRLN-----TKKHYSEIFIVG-GFKWRVLIFPKGNN----VDHLSMYLDVADSSSLP-YGWSRY-AQFSLA 123 (1077)
Q Consensus 56 ~~tw~I~nfS~l~-----~~~~~Sp~F~vG-G~~WrIll~P~Gn~----~~~lSiyL~~~~~~~~~-~~W~~~-a~f~l~ 123 (1077)
.+.|+|.||+++. ...++||+|+.+ ||..++.+||+|++ +.|+|+|+.+..++... ..|.|. -+++|.
T Consensus 3 ~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~itl~ 82 (167)
T cd03783 3 NAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAIIT 82 (167)
T ss_pred ceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEEEE
Confidence 4799999999862 347999999996 99999999999974 36899999999776533 489964 599999
Q ss_pred EEeecCCc---cee----eecce---------eecC--------------CCCCCCcccccccccccCCCCCCcccccce
Q 037461 124 VINQIHSK---YSV----RKDTQ---------HQFN--------------ARESDWGFTSFMPLGELYDPNRGYLVNDTL 173 (1077)
Q Consensus 124 Lln~~~~~---~~~----~~~~~---------h~F~--------------~~~~dwGf~~Fi~l~~L~~~~~gfl~nD~l 173 (1077)
|++|+... .++ ....+ ..|. ....+|||..|++++.| ..++||+||++
T Consensus 83 llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L--~~r~yikdDtl 160 (167)
T cd03783 83 VLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQL--RRRSFLKNDDL 160 (167)
T ss_pred EEcCCcchhhccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHH--hhCCcccCCeE
Confidence 99996311 111 00000 0121 13458999999999999 56899999999
Q ss_pred eeeEEE
Q 037461 174 IVEAEV 179 (1077)
Q Consensus 174 ~Ie~~V 179 (1077)
.|.+++
T Consensus 161 fI~~~~ 166 (167)
T cd03783 161 IIFVDF 166 (167)
T ss_pred EEEEec
Confidence 998765
No 58
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f
Probab=99.21 E-value=3.4e-11 Score=120.84 Aligned_cols=122 Identities=21% Similarity=0.481 Sum_probs=93.9
Q ss_pred EEEEEEccccccC-----CCeeecCcEEEC-CeeEEEEEEeCCCC--CCceEEEEEecCCCCCC-CCceEE-EEEEEEEE
Q 037461 56 RFTWRIENFSRLN-----TKKHYSEIFIVG-GFKWRVLIFPKGNN--VDHLSMYLDVADSSSLP-YGWSRY-AQFSLAVI 125 (1077)
Q Consensus 56 ~~tw~I~nfS~l~-----~~~~~Sp~F~vG-G~~WrIll~P~Gn~--~~~lSiyL~~~~~~~~~-~~W~~~-a~f~l~Ll 125 (1077)
+|.|+|.||+++. ...++||+|+.+ ||+.++.+||+|++ ..+||+|+.+..++..+ ..|.+. -+++|.|+
T Consensus 3 ~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g~~~~~lsl~~~lm~Ge~D~~L~WPf~~~qit~~Ll 82 (167)
T cd03782 3 EHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTDDYPGNLAIYLHLTSGPNDDQLQWPCPWQQATMMLL 82 (167)
T ss_pred cEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCCCCCCEEEEEEEEeccCCCccccCCCcCCeEEEEEE
Confidence 6899999999862 357999999987 99999999999974 46999999999776533 489999 89999999
Q ss_pred eecC---Ccceeee--cc------e--eec--C----------CC-------CCCCcccccccccccCCCCCCcccccce
Q 037461 126 NQIH---SKYSVRK--DT------Q--HQF--N----------AR-------ESDWGFTSFMPLGELYDPNRGYLVNDTL 173 (1077)
Q Consensus 126 n~~~---~~~~~~~--~~------~--h~F--~----------~~-------~~dwGf~~Fi~l~~L~~~~~gfl~nD~l 173 (1077)
+|+. ...++.. .. . ..| . .. +.+|||+.|+++++| .++.||+||++
T Consensus 83 DQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L--~~r~yikdD~i 160 (167)
T cd03782 83 DQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRL--RSRDFIKGDDV 160 (167)
T ss_pred cCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHH--hhcCcccCCeE
Confidence 9964 1122211 00 0 123 1 11 467999999999999 56889999999
Q ss_pred eeeEEE
Q 037461 174 IVEAEV 179 (1077)
Q Consensus 174 ~Ie~~V 179 (1077)
.|-+++
T Consensus 161 fi~~~~ 166 (167)
T cd03782 161 IFLLTM 166 (167)
T ss_pred EEEEec
Confidence 987654
No 59
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=98.40 E-value=1.1e-06 Score=93.16 Aligned_cols=221 Identities=19% Similarity=0.289 Sum_probs=128.3
Q ss_pred ccCCcccchhhhhHHHhhhHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccchhhhhhcc--CCccccccc
Q 037461 202 KNQGATCYMNSLLQTLFHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDSSVATKELTKSFG--WDTYDSFMQ 279 (1077)
Q Consensus 202 ~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~l~~~Lq~Lf~~l~~s~~~v~~~~l~~s~~--~~~~~~~~Q 279 (1077)
+|-.|-||+-++|-+|.|+..+|+.+-+.. ....++...|..-+.+.. ..+.+......-+ ........-
T Consensus 6 ~N~~aLCWLDciLsaLVh~~~Lk~~~~~~~-----~~e~s~~~~L~~~Y~qa~---~ll~~~q~~~~~~~~~~~~~~~~l 77 (275)
T PF15499_consen 6 KNSNALCWLDCILSALVHLESLKNAVTELC-----SKEESVFWRLFTKYNQAN---KLLHTCQLDGVKDDDCKKVPSEIL 77 (275)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHhhhc-----cccccHHHHHHHHHHHHH---HHHHhhhhcCCCCcccccCchHHH
Confidence 688899999999999999999999995422 223455444444443322 1111111110000 000001011
Q ss_pred ccHHHHHH----HHHHHHHHHhcCC------c---------cccccccccceEEeeEEEeeeeeeecce-----eeeeee
Q 037461 280 HDVQELNR----VLSEKLEDKMKGT------V---------VEGTIQQLFEGHHMNYIECINVDYKSTR-----KESFYD 335 (1077)
Q Consensus 280 qDa~Efl~----~Lld~Le~e~~~~------~---------~~~~i~~lF~G~~~~~i~C~~C~~~s~~-----~E~f~~ 335 (1077)
.+|..-+. .+++.|.-.++-+ + .+..+.++|.-...=.-.|..||+.... ...|..
T Consensus 78 ~~ae~~Ln~vR~~iF~~LqPkL~C~LG~~ESPVFAlPLLLk~d~~~E~lF~~sf~WeFeC~~Cg~~~~~R~~K~L~TFtn 157 (275)
T PF15499_consen 78 AKAETCLNEVRMEIFIQLQPKLRCKLGDMESPVFALPLLLKLDPWIEKLFLYSFSWEFECSQCGHKYQNRCTKTLVTFTN 157 (275)
T ss_pred HHHHHHHHHHHHHHHHHhCccCCCCCCCccCcHHHhHHHHhcchHHHhHhheeeEEEEEccccCChhhhhheeeecccCC
Confidence 12222233 2333333222211 0 2455789999999999999999986532 122222
Q ss_pred eeeeecCCCCHHHHHhhccceEEecCCCcccccccCeeeceeeEEeccCCCeEEEEEeeEEEecccCeeeeccceEeeCc
Q 037461 336 LQLDVKGCRDVYASFDKYVEVERLEGDNKYHAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPL 415 (1077)
Q Consensus 336 L~L~v~~~~sL~esL~~~~~~E~l~g~n~y~C~~c~~~~a~k~~~i~~lP~vLiI~LkRF~~d~~~~~~~Ki~~~v~FP~ 415 (1077)
+ ++.-..|..+ ..-.|..|+.....+++.+.++|+|+.+|+. .| +|.
T Consensus 158 v---~pdwhPLnA~-------------h~~pCn~C~~ksQ~rkMvlekv~~vfmLHFV-------eG----------LP~ 204 (275)
T PF15499_consen 158 V---IPDWHPLNAV-------------HFGPCNSCNSKSQRRKMVLEKVPPVFMLHFV-------EG----------LPH 204 (275)
T ss_pred C---CCCCCccccc-------------ccCCCcccCChHHhHhhhhhcCchhhhhhhh-------cc----------CCc
Confidence 2 2222222221 1236899988888889999999999999953 11 122
Q ss_pred ccccccccCCCCCCCcCcCCCccEEEEEEEEeeeccCCceEEEEEEeCCCCCEEEEeCce
Q 037461 416 QLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDER 475 (1077)
Q Consensus 416 ~LdL~~~~~~yl~~~~~~~~~~~Y~L~gVVvH~Gs~~~GHY~ayvr~~~~~~Wy~fnD~~ 475 (1077)
. |+..|.-.| .+..|++.+||-+.-. --|++++|++. +|.|.++||-+
T Consensus 205 n-dl~~ysF~f--------eg~~Y~Vt~VIQY~~~--~~HFvtWi~~~-dGsWLecDDLk 252 (275)
T PF15499_consen 205 N-DLQHYSFHF--------EGCLYQVTSVIQYQAN--LNHFVTWIRDS-DGSWLECDDLK 252 (275)
T ss_pred c-CCCccceee--------cCeeEEEEEEEEEecc--CceeEEEEEcC-CCCeEeeccCC
Confidence 2 231111111 3567999999988653 56999999997 88899999965
No 60
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.02 E-value=2.3e-05 Score=88.70 Aligned_cols=125 Identities=41% Similarity=0.712 Sum_probs=100.8
Q ss_pred EEEEEEccccccCCCeeecCcEEECCeeEEEEEEeCCCCCCceEEEEEecCCCCCCCCceEEEEEEEEEEeecCCcc-ee
Q 037461 56 RFTWRIENFSRLNTKKHYSEIFIVGGFKWRVLIFPKGNNVDHLSMYLDVADSSSLPYGWSRYAQFSLAVINQIHSKY-SV 134 (1077)
Q Consensus 56 ~~tw~I~nfS~l~~~~~~Sp~F~vGG~~WrIll~P~Gn~~~~lSiyL~~~~~~~~~~~W~~~a~f~l~Lln~~~~~~-~~ 134 (1077)
.++|.|.+++... ..++|..|..||..|++.+||.|+ ++|.|+.+.... +|.+.|.+.|.+.|+..... +.
T Consensus 5 ~~~~~~~~~~~~~-l~~ys~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----~~~~~~~~~l~v~n~~~~~~~~~ 76 (297)
T KOG1987|consen 5 KFTWVISNFSSVG-LVIYSNGFVKGGCKWRLSAYPKGN---YLSLTLSVSDSP----GWERYAKLRLTVVNQKSEKYLST 76 (297)
T ss_pred ccceeeccCcchh-hhccccceeecCceEEEEEecCCC---EEEEEEEeccCC----CcceeEEEEEEEccCCCcceeee
Confidence 4459999999884 789999999999999999999996 789999887543 89999999999999987643 33
Q ss_pred eecceeecCC--CCCCCcccccccccccCCCCCCcccccceeeeEEEEEEeecccc
Q 037461 135 RKDTQHQFNA--RESDWGFTSFMPLGELYDPNRGYLVNDTLIVEAEVIVRRVVDYW 188 (1077)
Q Consensus 135 ~~~~~h~F~~--~~~dwGf~~Fi~l~~L~~~~~gfl~nD~l~Ie~~V~V~~~~~~~ 188 (1077)
.......|.. -...||+..+.+...+.+...||+.++.+.+.+.+.|.+....+
T Consensus 77 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~~~~~ 132 (297)
T KOG1987|consen 77 VEEGFSWFRFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFEAMGKS 132 (297)
T ss_pred eeeeEEeccccccccccCcccccChHHhhcccCcEEEcCceEEEeeecceeeeccc
Confidence 3233444443 36789999999999998888999999888888887777754433
No 61
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.0011 Score=80.95 Aligned_cols=99 Identities=23% Similarity=0.242 Sum_probs=58.7
Q ss_pred cccCCcccchhhhhHHHhhhHHHHHHhccCCCCC---------CCCCCCCHHHHHHHHHHHHhcC------CC--cccch
Q 037461 201 LKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTTE---------NDMPSGSIPLALQSLFYKLQYS------DS--SVATK 263 (1077)
Q Consensus 201 L~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~---------~~~~~~~l~~~Lq~Lf~~l~~s------~~--~v~~~ 263 (1077)
|.|.||+||.||+||+|+.+|+|+..+.+.+..- .........+..+.+-.-+... .. ..+..
T Consensus 34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 113 (587)
T KOG1864|consen 34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKNSSSNESFNLSVT 113 (587)
T ss_pred EeecCCchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhccCCccccccchHH
Confidence 9999999999999999999999998876543210 0011111222222222211110 01 11112
Q ss_pred hhhhhcc-----CCcccccccccHHHHHHHHHHHHHHHhcC
Q 037461 264 ELTKSFG-----WDTYDSFMQHDVQELNRVLSEKLEDKMKG 299 (1077)
Q Consensus 264 ~l~~s~~-----~~~~~~~~QqDa~Efl~~Lld~Le~e~~~ 299 (1077)
.+...+. ...+....|+|+++++.-|+-.+...+..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~~~~~~ 154 (587)
T KOG1864|consen 114 QLVQSRLNNGKKYAEFNNNDQRDAHNFLLELMAMVDDVMGV 154 (587)
T ss_pred HHHHHHhhhhhhhhhhhcccHhhhhhhhhhhhHHHhhhccc
Confidence 2222221 23456678999999999999999887754
No 62
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=94.19 E-value=2.1 Score=47.35 Aligned_cols=197 Identities=17% Similarity=0.236 Sum_probs=106.8
Q ss_pred cEEEeeccccCCCC-C-CCccc-ccCccchHHhhhccCC--CcceeeEEEec-----cChhhhccc--ceEEEEEEcCCC
Q 037461 805 KIRLTSHNCYSQQP-K-PQPIK-YRGVDHLSDMLIHYNQ--TSDVLYYEVLD-----IPLPELQCL--KTLKVAFHHATK 872 (1077)
Q Consensus 805 ~lr~~~~~~~~~~~-~-~~~~~-~~~~~~l~~~l~~~~~--~~~~l~YevL~-----i~l~elE~~--k~~kv~w~~~~~ 872 (1077)
++|||....=.|.. . ..|+. .....++.++...... ..-.||=|+++ -++...... -.|=+.+.++..
T Consensus 1 ~~RlW~~~~R~N~T~Rp~~p~~~~~~~~tl~~~~~~~~~~~~~~~lflE~~~~~~~~~~~~~~~~~~~iLlFlK~fDp~~ 80 (249)
T PF12436_consen 1 RFRLWRMVNRQNKTLRPDTPLPEEDEDMTLEEVRNKDSNKQSELRLFLEEASPNSPSEPLPPYDPSDDILLFLKYFDPET 80 (249)
T ss_dssp GEEEEEEEE-CTTBEEE----CCHHCTSBCHHHHTS--S---SEEEEEEE--HHTTT-------TTTEEEEEEEEEETTT
T ss_pred CEEEEEEECCCCCCCCCCCcCCcccccccHHHHhhcccccccccEEEEeccCcccccccCCCCCCCCcEEEEEEeeCCCC
Confidence 47899853211111 1 12331 2234778887764222 22467888853 233333333 345556677766
Q ss_pred CeE-EEEEEEcCCCCCHHHHHHHHhhccccCCCCccEEEEEE-eccEEEEecCCcccccc--cccccceEEeeecchhhh
Q 037461 873 DEV-SVHTIRLPKQSTVGDVINDLKTKVELSQPDAELRLLEV-FYHKIYKIFPLNEKIEN--INDQYWTLRAEEIPEEEK 948 (1077)
Q Consensus 873 ~~~-~~~~~~v~k~~tv~dll~~l~~~~~~~~~~~~lRl~ev-~~~ki~~~~~~~~~i~~--i~~~~~~~~~E~iP~~e~ 948 (1077)
+.. ..=.++|+++.+|++|+..+.+.+|++.+ .+|.+||- .-++|..+ ++..++.. |.+ +..+..+..+.++.
T Consensus 81 q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~-t~l~lyEEi~~~~ie~i-~~~~t~~~~el~~-GdIi~fQ~~~~~~~ 157 (249)
T PF12436_consen 81 QTLRYIGHVYVPKNDKVSELVPLINERAGLPPD-TPLLLYEEIKPNMIEPI-DPNQTFEKAELQD-GDIICFQRAPSEDL 157 (249)
T ss_dssp TEEEEEEEEEEETT-BGGGTHHHHHHHHT--TT---EEEEEEEETTEEEE---SSSBHHHTT--T-TEEEEEEE--GG--
T ss_pred CEEEEEeEEEECCCCCHHHHHHHHHHHcCCCCC-CceEEEEEeccceeeEc-CCCCchhhcccCC-CCEEEEEecccccc
Confidence 554 34479999999999999999999999654 47999974 66788777 66665544 444 56888887665421
Q ss_pred cCC---CC---------CeEEEEEEeec--cCccccccccccCcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEE
Q 037461 949 NLG---PH---------DRLIHVYHFTK--ETAQNQMQIQNFGEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFA 1014 (1077)
Q Consensus 949 ~~~---~~---------~~~i~v~hf~k--~~~~~h~~~~~fGiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a 1014 (1077)
... ++ .++. .||.. .+. +-+|.+.+...-++.++-++|.++||+.. ++++|-
T Consensus 158 ~~~~~~~~v~~Yy~~l~nrv~--V~f~~~~~~~---------~~~F~l~ls~~~tY~~la~~Va~~l~~dP---~~lr~~ 223 (249)
T PF12436_consen 158 DKSSRYPDVKEYYDFLYNRVE--VEFKPKDNPN---------DPEFTLWLSKKMTYDQLAEKVAEHLNVDP---EHLRFF 223 (249)
T ss_dssp GGGSSS-SHHHHHHHHHHEEE--EEEEETTSTT------------EEEEEETT--HHHHHHHHHHHHTS-G---GGEEEE
T ss_pred ccccCCCCHHHHHHHHhCeEE--EEEEECCCCC---------CCCEEEEECCCCCHHHHHHHHHHHHCCCh---HHEEEE
Confidence 111 01 1332 23433 333 45999999999999999999999999944 588887
Q ss_pred EEec
Q 037461 1015 FLSL 1018 (1077)
Q Consensus 1015 ~~~~ 1018 (1077)
-+..
T Consensus 224 ~~~~ 227 (249)
T PF12436_consen 224 TVNP 227 (249)
T ss_dssp ---T
T ss_pred Eecc
Confidence 7743
No 63
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=93.85 E-value=0.53 Score=50.83 Aligned_cols=156 Identities=18% Similarity=0.209 Sum_probs=82.6
Q ss_pred HhcceE--EEEEecCCCCCCCeEEEecccCCHHHHHHHHHHHcCCCC--CCcEEEeeccccCCCCCCCcccccCccchHH
Q 037461 758 VHNRQV--VHFRSLEKPKEDDFCLEMSKLYTYDDVVERVAQQLGLDD--PSKIRLTSHNCYSQQPKPQPIKYRGVDHLSD 833 (1077)
Q Consensus 758 L~nr~~--v~f~~~~~~~~~~f~~~ls~~~~Y~~~~~~v~~~l~~~~--p~~lr~~~~~~~~~~~~~~~~~~~~~~~l~~ 833 (1077)
|.++.. |.+..-.......+++.+++.-|=.+|.++|++++++.+ ..+||+|..+. + +...+ .....+|.+
T Consensus 15 lE~kk~~kv~w~~~~~~~~~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~--~--ki~~~-~~~d~~i~~ 89 (213)
T PF14533_consen 15 LENKKQFKVTWLNDGLKEEQEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSN--H--KIYKI-LSEDEPISS 89 (213)
T ss_dssp HHSB--EEEEEE-TTS-EE-EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEET--T--EEEEE-E-TTSBGGG
T ss_pred HhCceEEEEEEECCCCcceeEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeEC--C--EEEee-cCCCCchhh
Confidence 344444 444433323344699999999999999999999999752 45899998422 1 21111 112345555
Q ss_pred hhhccCCCcceeeEEEeccChhhhccc------ceEEEEEE-cCC-CCeEEEEEEEcCCCCCHHHHHHHHhhccccCC-C
Q 037461 834 MLIHYNQTSDVLYYEVLDIPLPELQCL------KTLKVAFH-HAT-KDEVSVHTIRLPKQSTVGDVINDLKTKVELSQ-P 904 (1077)
Q Consensus 834 ~l~~~~~~~~~l~YevL~i~l~elE~~------k~~kv~w~-~~~-~~~~~~~~~~v~k~~tv~dll~~l~~~~~~~~-~ 904 (1077)
+ . .. ..++-| .||-.|++-. +.|.|.=. .+. ..+-..|.|.|.++-|+.|+.+.|++++++++ +
T Consensus 90 l-~---~~-~~~r~E--~ip~ee~~~~~~~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~ke 162 (213)
T PF14533_consen 90 L-N---DY-ITLRIE--EIPEEELNLDDESEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSDKE 162 (213)
T ss_dssp S------T-TEEEEE--E--GGGSS--TT--TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---HHH
T ss_pred c-c---Cc-ceeeee--cCChHHhhcccccccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCChhh
Confidence 4 1 11 123334 6777775543 55666544 332 33336899999999999999999999999987 4
Q ss_pred CccEEEEEEeccEEE--EecCCc
Q 037461 905 DAELRLLEVFYHKIY--KIFPLN 925 (1077)
Q Consensus 905 ~~~lRl~ev~~~ki~--~~~~~~ 925 (1077)
-.|+++.-+.+++.. ..+..+
T Consensus 163 F~K~Kfaiv~~~~~~~~~yl~d~ 185 (213)
T PF14533_consen 163 FEKWKFAIVQNSRYSKPRYLEDD 185 (213)
T ss_dssp HTT-EEEEEETTEE---EE--TT
T ss_pred heeEEEEEEecCCcccceecccc
Confidence 578999888888884 444443
No 64
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=93.42 E-value=0.39 Score=54.58 Aligned_cols=101 Identities=13% Similarity=0.156 Sum_probs=52.5
Q ss_pred ccccceeecccCCcccchhhhhHHHhhhHH-HHHHhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccchhhhhhc-c
Q 037461 193 KKETGYVGLKNQGATCYMNSLLQTLFHIPY-FRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDSSVATKELTKSF-G 270 (1077)
Q Consensus 193 k~~~g~vGL~N~GnTCYmNSvLQ~L~~~p~-fr~~l~~~~~~~~~~~~~~l~~~Lq~Lf~~l~~s~~~v~~~~l~~s~-~ 270 (1077)
....|++=|+=.-|.||+||++=.|=++.. |+ .-+++.++.++..++. ..|...+ .
T Consensus 97 ~~~~g~~~Lkq~dNNCwVna~~~~LQ~~~~~f~------------------~~~l~~aw~~f~~G~~----~~fVa~~Ya 154 (320)
T PF08715_consen 97 VVVNGFRVLKQSDNNCWVNAACLQLQALKIKFK------------------SPGLDEAWNEFKAGDP----APFVAWCYA 154 (320)
T ss_dssp EEETTEEEE---TTTHHHHHHHHHHTTST--BS------------------SHHHHHHHHHHHTT------HHHHHHHHH
T ss_pred EEECCEEEEEecCCCcHHHHHHHHHHhcCCccC------------------CHHHHHHHHHHhCCCh----HHHHHHHHH
Confidence 345688888888999999999766533321 11 1255666666555443 2222211 1
Q ss_pred CCcccccccccHHHHHHHHHHHHHHHhcCCccccccccccceEEeeEEEeeeeeeecc
Q 037461 271 WDTYDSFMQHDVQELNRVLSEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKST 328 (1077)
Q Consensus 271 ~~~~~~~~QqDa~Efl~~Lld~Le~e~~~~~~~~~i~~lF~G~~~~~i~C~~C~~~s~ 328 (1077)
......++..||+++|+.|++.+... ....+.....|..||....
T Consensus 155 ~~~~~~G~~gDa~~~L~~ll~~~~~~-------------~~~~~~~~~~~c~CG~k~~ 199 (320)
T PF08715_consen 155 STNAKKGDPGDAEYVLSKLLKDADLD-------------YSVTMTKLEVCCGCGVKQE 199 (320)
T ss_dssp HTT--TTS---HHHHHHHHHTTB-TT-------------T-EEEEEEEEECTTEEEEE
T ss_pred HcCCCCCCCcCHHHHHHHHHHhcccc-------------ceEEEEEeeeeccCCccee
Confidence 12344567889999999998766432 1233444567888986543
No 65
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=90.87 E-value=0.054 Score=66.72 Aligned_cols=191 Identities=17% Similarity=0.253 Sum_probs=109.3
Q ss_pred cccHHHHHHHHHHHHHHHhcCCc--------------------cccccccccceEEeeEEEeeeeeeecceee-eeeeee
Q 037461 279 QHDVQELNRVLSEKLEDKMKGTV--------------------VEGTIQQLFEGHHMNYIECINVDYKSTRKE-SFYDLQ 337 (1077)
Q Consensus 279 QqDa~Efl~~Lld~Le~e~~~~~--------------------~~~~i~~lF~G~~~~~i~C~~C~~~s~~~E-~f~~L~ 337 (1077)
..++.++|..++..|++...... ..+..+++|+-.......|..|+..+...+ .-+.+.
T Consensus 549 ~~~~S~lL~~ll~~l~~~~~~ss~~~~v~~aile~~~~Wk~~er~~l~~~lf~l~~~e~~Sc~~cr~~~n~peqsS~~~~ 628 (806)
T KOG1887|consen 549 EGVYSELLSDLLLSLEEVHNASSSAADVVVAILEFWQCWKNPERESLVNRLFTLEEKERMSCSKCRRDLNYPEQSSYGIV 628 (806)
T ss_pred hhhHHHHHHHHHhhhHHHhhhcchhhHHHHHHHhcccccccHHHHHHHHhhhhhhhhhhccccccccCCCCcchhhhhhh
Confidence 34566777777777766554321 245677899888888999999987665431 111222
Q ss_pred eeecCCCCHHHHHh-----hccceEEecCCCcccc----cccCeeeceeeEEeccCCCeEEEEEeeEEEecccCeeeecc
Q 037461 338 LDVKGCRDVYASFD-----KYVEVERLEGDNKYHA----EQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKIN 408 (1077)
Q Consensus 338 L~v~~~~sL~esL~-----~~~~~E~l~g~n~y~C----~~c~~~~a~k~~~i~~lP~vLiI~LkRF~~d~~~~~~~Ki~ 408 (1077)
+.......+..++. .+++. +.-+.+..| .+||+..- ....|...|+|++|.|.-= +....|..
T Consensus 629 ~~a~slr~~k~a~~n~~f~~ilk~--i~m~~~m~cD~~~gGCgk~n~-v~h~is~~P~vftIvlewE-----k~ETe~eI 700 (806)
T KOG1887|consen 629 IAADSLRQLKCAFQNITFEDILKN--IRMNDKMLCDKETGGCGKANL-VHHILSPCPPVFTIVLEWE-----KSETEKEI 700 (806)
T ss_pred ccchhhhhHHHHhhhhhHHHHHHH--hhhhhhhcccccCCCCcchhh-hhhhcCCCCCeeEeeeehh-----cccchHHH
Confidence 22222222222222 22222 111123445 34776433 3345788999999966532 22222211
Q ss_pred --ceEeeCcccccccccCCCCCCCcCcCCCccEEEEEEEEeeeccCCceEEEEEEeCCCCCEE--EEeCceeeEe-cHHH
Q 037461 409 --DRYEFPLQLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWY--KFDDERVTKE-DLKR 483 (1077)
Q Consensus 409 --~~v~FP~~LdL~~~~~~yl~~~~~~~~~~~Y~L~gVVvH~Gs~~~GHY~ayvr~~~~~~Wy--~fnD~~Vt~v-s~~e 483 (1077)
+...+-.++|++ ..|- . .......|+|+++|.-.+. +++|.|+... .+.|. +.+|..+..+ +|..
T Consensus 701 ~~T~~aL~teidis---~~y~-~--g~ep~t~yrLVSmv~~~e~--~~~~~C~Aye--~Nrwvs~r~~~~~~e~iG~w~d 770 (806)
T KOG1887|consen 701 SETTKALATEIDIS---RLYR-E--GLEPNTKYRLVSMVGNHEE--GEEYICFAYE--PNRWVSLRHEDSQGEVVGDWKD 770 (806)
T ss_pred HHHHHHHHhhhhHH---HHhh-h--ccCcCceeEEEEEeeeccc--cceEEEeecc--CCcchhhHHHHHHhhhccchHH
Confidence 122344556763 2231 1 1134578999999975533 7899999998 46776 9999888777 6777
Q ss_pred HHHH
Q 037461 484 ALEE 487 (1077)
Q Consensus 484 vl~~ 487 (1077)
|+.-
T Consensus 771 vvr~ 774 (806)
T KOG1887|consen 771 VVRF 774 (806)
T ss_pred HHHH
Confidence 7654
No 66
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only]
Probab=88.76 E-value=0.19 Score=58.67 Aligned_cols=31 Identities=19% Similarity=0.446 Sum_probs=23.3
Q ss_pred eeecccCCcccchhhhhHHHhhhHHHHHHhc
Q 037461 198 YVGLKNQGATCYMNSLLQTLFHIPYFRKAVY 228 (1077)
Q Consensus 198 ~vGL~N~GnTCYmNSvLQ~L~~~p~fr~~l~ 228 (1077)
+.|++-+-|.||+||.|-++|.-......++
T Consensus 368 ~kgiqgh~nscyldstlf~~f~f~sv~dS~l 398 (724)
T KOG3556|consen 368 IKGIQGHPNSCYLDSTLFKPFEFDSVTDSTL 398 (724)
T ss_pred cccccCCcchhhccccccccccccccccccc
Confidence 4677778899999999998887665544443
No 67
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=88.28 E-value=2.1 Score=51.78 Aligned_cols=122 Identities=18% Similarity=0.273 Sum_probs=80.8
Q ss_pred EEEeccChhhhcccceEEEEEEcCCCCeEEEEEEEcCCCCCHHHHHHHHhhccccCCCCccEEEEEEeccEEEEecCCcc
Q 037461 847 YEVLDIPLPELQCLKTLKVAFHHATKDEVSVHTIRLPKQSTVGDVINDLKTKVELSQPDAELRLLEVFYHKIYKIFPLNE 926 (1077)
Q Consensus 847 YevL~i~l~elE~~k~~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~~~~~~~~lRl~ev~~~ki~~~~~~~~ 926 (1077)
|=-|.+|++ ..-++++++.-.+.... .+.+.+.+.+|+.+|-+.+.++.+... -.+|.+-+++.|+.++++.+-.
T Consensus 443 dlTLPLPvs-~vw~htiv~fp~~g~~~---pl~iel~~sSt~~~lk~lv~~~~gk~g-c~ei~v~~iy~g~~y~~l~~~d 517 (823)
T COG5560 443 DLTLPLPVS-MVWKHTIVVFPESGRRQ---PLKIELDASSTIRGLKKLVDAEYGKLG-CFEIKVMCIYYGGNYNMLEPAD 517 (823)
T ss_pred hccccCchh-hcccccEEEECCCCCCC---ceEEEEeccchHHHHHHHHHHHhccCC-ccceeEEEEEeccchhhcchhh
Confidence 334555555 34455565555444433 478899999999999998888887654 3389999999999999997655
Q ss_pred c--ccccccccceEEeeecchhhhcCCCCCeEEEEEEeeccCccccccccccCcceEEEe
Q 037461 927 K--IENINDQYWTLRAEEIPEEEKNLGPHDRLIHVYHFTKETAQNQMQIQNFGEPFFLVI 984 (1077)
Q Consensus 927 ~--i~~i~~~~~~~~~E~iP~~e~~~~~~~~~i~v~hf~k~~~~~h~~~~~fGiPF~~~i 984 (1077)
. +..|.....-|.-| -.+++.+|+|+|-.-++. .+.-..||.|| |.+
T Consensus 518 k~ll~~I~~~d~vylYe--------~~~ngi~vpvvh~~~~~g--Yks~rlFg~pf-lql 566 (823)
T COG5560 518 KVLLQDIPQTDFVYLYE--------TNDNGIEVPVVHLRIEKG--YKSKRLFGDPF-LQL 566 (823)
T ss_pred HHHHhhcCccceEEEee--------cCCCCeEEEEEecccccc--ccchhhhCCcc-eEE
Confidence 4 33444311112222 234679999999954444 33458899997 443
No 68
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=88.13 E-value=0.24 Score=50.91 Aligned_cols=30 Identities=27% Similarity=0.256 Sum_probs=23.5
Q ss_pred cCCceEEEEEEeCCCCCEEEEeCceeeEecHH
Q 037461 451 VHGGHYYAFIRPTLSDQWYKFDDERVTKEDLK 482 (1077)
Q Consensus 451 ~~~GHY~ayvr~~~~~~Wy~fnD~~Vt~vs~~ 482 (1077)
-..||.+.+.+. .+.||.+||+.+.+.++.
T Consensus 136 ~g~~Havfa~~t--s~gWy~iDDe~~y~~tPd 165 (193)
T PF05408_consen 136 KGQEHAVFACVT--SDGWYAIDDEDFYPWTPD 165 (193)
T ss_dssp ESTTEEEEEEEE--TTCEEEEETTEEEE----
T ss_pred cCCcceEEEEEe--eCcEEEecCCeeeeCCCC
Confidence 346899999998 799999999999998764
No 69
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=87.54 E-value=1.4 Score=57.20 Aligned_cols=139 Identities=22% Similarity=0.272 Sum_probs=96.3
Q ss_pred EEeccChhhhcccceEEEEEEcCCCCeEEEEEEEcCCCCCHHHHHHHHhhccccCCCCccEEEEEEeccEEEEecCCc-c
Q 037461 848 EVLDIPLPELQCLKTLKVAFHHATKDEVSVHTIRLPKQSTVGDVINDLKTKVELSQPDAELRLLEVFYHKIYKIFPLN-E 926 (1077)
Q Consensus 848 evL~i~l~elE~~k~~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~~~~~~~~lRl~ev~~~ki~~~~~~~-~ 926 (1077)
-.|+.|++.=+..+.-.+.+..+....-..+.+-++++++++||++.+.+..++. ..+|++.+|.++++.+++..+ .
T Consensus 420 ~~Lslp~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~l~~~~i~~~~~~~~~~~~~~ 497 (842)
T KOG1870|consen 420 GYLSLPLPGKEIQKLEVTVPHGDGFRKPGALGVSVAKNGRIRDLLEYLSRTVGLL--SWELKPVEILFDCFNKIFAADEL 497 (842)
T ss_pred ccccccCCCCcccceeEEEecCCCCCChhheeeeccccchHHHHHHHHHHHhccc--hhhcccceeccchhhhhhccCcc
Confidence 3356666644444444566666666656678999999999999999999999987 668999999999999999998 4
Q ss_pred cccccccccceEEeeecchhhhcCCCCCeEEEEEEeeccC-c----cccccccccCcceEEEeccCCcHH
Q 037461 927 KIENINDQYWTLRAEEIPEEEKNLGPHDRLIHVYHFTKET-A----QNQMQIQNFGEPFFLVIHEGETLQ 991 (1077)
Q Consensus 927 ~i~~i~~~~~~~~~E~iP~~e~~~~~~~~~i~v~hf~k~~-~----~~h~~~~~fGiPF~~~i~~~E~~~ 991 (1077)
....+.. ...+...++|. ....+. .-.|.+.|+.... . +.|.....||.||+..+..|.++.
T Consensus 498 ~~~~i~~-~~~~~~~~~~~-~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~t 564 (842)
T KOG1870|consen 498 KLDSIYS-DEELFDYELGV-LKVQGS-IYAIIVVRFRSRLPRSKGIRSHVSSKLFGLPLLVSVLSGAQST 564 (842)
T ss_pred ccccccC-CcceEEeeccc-cccccc-ceEEEEEeeccccccccCcccCCCccccCCcceeeccCCCccc
Confidence 6666654 34566667776 211111 2334444444333 2 233445689999999999985543
No 70
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=86.62 E-value=0.8 Score=40.13 Aligned_cols=55 Identities=29% Similarity=0.427 Sum_probs=42.6
Q ss_pred EEEEecCCCchhhHHHHHHhcCCCCCCcEEE-EEEeecCCcccccccccccccccccCCCCCEEE
Q 037461 670 RLFVKSTGKPMEYLPKLNEMAGYAPDEEIDL-YEEIKFEPSVMCEPIEKRCTFRASQLEDGDIIC 733 (1077)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l-yEEik~~p~~~ie~i~~~~tf~~~el~~GdIi~ 733 (1077)
.+.|.++.+++.|+...++..|+|+.+.+.| |. + +.++++.|+...+|.+||+|=
T Consensus 14 ~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fd------G---~~L~~~~T~~~~~ied~d~Id 69 (72)
T PF11976_consen 14 KFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFD------G---KRLDPNDTPEDLGIEDGDTID 69 (72)
T ss_dssp EEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEET------T---EEE-TTSCHHHHT-STTEEEE
T ss_pred EEEECCCCcHHHHHHHHHHhhCCCccceEEEEEC------C---EEcCCCCCHHHCCCCCCCEEE
Confidence 4578899999999999999999999555544 32 2 457788899999999999973
No 71
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=86.52 E-value=2.4 Score=38.86 Aligned_cols=74 Identities=20% Similarity=0.170 Sum_probs=57.0
Q ss_pred CCCcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccC
Q 037461 647 TKEDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQL 726 (1077)
Q Consensus 647 ~~~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el 726 (1077)
....|.||+|.- ...++. +-|.++.+++.|+..++++.|+|+++.-.+|.- ..|+...|.....+
T Consensus 8 ~~~~i~I~v~~~--~g~~~~----~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G---------~~L~~~~T~~~l~m 72 (87)
T cd01763 8 ISEHINLKVKGQ--DGNEVF----FKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDG---------QRIRDNQTPDDLGM 72 (87)
T ss_pred CCCeEEEEEECC--CCCEEE----EEEcCCCHHHHHHHHHHHHhCCCccceEEEECC---------eECCCCCCHHHcCC
Confidence 345677777654 333433 457899999999999999999999877666753 35667889999999
Q ss_pred CCCCEEEEE
Q 037461 727 EDGDIICFQ 735 (1077)
Q Consensus 727 ~~GdIi~fQ 735 (1077)
++||+|-+-
T Consensus 73 ~d~d~I~v~ 81 (87)
T cd01763 73 EDGDEIEVM 81 (87)
T ss_pred CCCCEEEEE
Confidence 999999774
No 72
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=86.46 E-value=2.9 Score=38.11 Aligned_cols=64 Identities=25% Similarity=0.313 Sum_probs=48.5
Q ss_pred EEEEEEcCCCCeEEEEEEEcCCCCCHHHHHHHHhhccccCCCCccEEEEEEecc-EEEEecCCcccc
Q 037461 863 LKVAFHHATKDEVSVHTIRLPKQSTVGDVINDLKTKVELSQPDAELRLLEVFYH-KIYKIFPLNEKI 928 (1077)
Q Consensus 863 ~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~~~~~~~~lRl~ev~~~-ki~~~~~~~~~i 928 (1077)
+||+.-+. .....-++.|+++.|..||+..+.+|+++.+......|+|+..+ ...+.+.+++..
T Consensus 2 ikV~~~~~--~~~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~~~~er~L~~~e~p 66 (87)
T cd01768 2 LRVYPEDP--SGGTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGDGGLERLLLPDECP 66 (87)
T ss_pred EEEeCCcC--CCccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECCceEEEEeCCCCCh
Confidence 45665443 22334589999999999999999999999876678999999876 566666666543
No 73
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=84.85 E-value=3.7 Score=37.65 Aligned_cols=63 Identities=27% Similarity=0.371 Sum_probs=47.7
Q ss_pred eEEEEEEcCCCCeEEEEEEEcCCCCCHHHHHHHHhhccccCCCCccEEEEEEeccEEEEecCCcc
Q 037461 862 TLKVAFHHATKDEVSVHTIRLPKQSTVGDVINDLKTKVELSQPDAELRLLEVFYHKIYKIFPLNE 926 (1077)
Q Consensus 862 ~~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~~~~~~~~lRl~ev~~~ki~~~~~~~~ 926 (1077)
.+||+.-.. ....--++.|+++.|+.||+..+.+|+++.+......|+|+..+...+.+.+++
T Consensus 4 ~lrV~~~~~--~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~~~~~er~L~~~e 66 (90)
T smart00314 4 VLRVYVDDL--PGGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEVLPDGKERVLPDDE 66 (90)
T ss_pred EEEEecccC--CCCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEEeCCcEEEEeCCCC
Confidence 467776442 223345899999999999999999999998766679999998555556666554
No 74
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=84.62 E-value=0.74 Score=54.29 Aligned_cols=76 Identities=24% Similarity=0.477 Sum_probs=61.8
Q ss_pred CCCcEEEEEEccccccC-------CCeeecCcEEEC--CeeEEEEEEeCCCC---CCceEEEEEecCCCCCC-CCceEEE
Q 037461 52 PPSSRFTWRIENFSRLN-------TKKHYSEIFIVG--GFKWRVLIFPKGNN---VDHLSMYLDVADSSSLP-YGWSRYA 118 (1077)
Q Consensus 52 ~~~~~~tw~I~nfS~l~-------~~~~~Sp~F~vG--G~~WrIll~P~Gn~---~~~lSiyL~~~~~~~~~-~~W~~~a 118 (1077)
--.|++.|+|.+|+..+ ...++||.|+.. ||.-+..+|-+|++ ..++|+|+.+..++..+ ..|...-
T Consensus 277 ~~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g~~~~~~~s~~~~~~~ge~d~~l~wpf~~ 356 (391)
T KOG0297|consen 277 SYDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDGTGKGTHLSLYFVVMRGEYDALLPWPFRQ 356 (391)
T ss_pred ccCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCCCCCcceeeeeeeecccCcccccccCCCC
Confidence 44789999999995542 247899999986 88888888888763 36899999998776543 4899999
Q ss_pred EEEEEEEee
Q 037461 119 QFSLAVINQ 127 (1077)
Q Consensus 119 ~f~l~Lln~ 127 (1077)
++++.+++|
T Consensus 357 ~v~~~l~dq 365 (391)
T KOG0297|consen 357 KVTLMLLDQ 365 (391)
T ss_pred ceEEEEecc
Confidence 999999998
No 75
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=83.35 E-value=5.1 Score=36.16 Aligned_cols=63 Identities=14% Similarity=0.358 Sum_probs=44.9
Q ss_pred eEEEEEecCCCCCCCeEEEecccCCHHHHHHHHHHHcCCCCCCcEEEeeccccCCCCCCCcccccCccchHHhhhc
Q 037461 762 QVVHFRSLEKPKEDDFCLEMSKLYTYDDVVERVAQQLGLDDPSKIRLTSHNCYSQQPKPQPIKYRGVDHLSDMLIH 837 (1077)
Q Consensus 762 ~~v~f~~~~~~~~~~f~~~ls~~~~Y~~~~~~v~~~l~~~~p~~lr~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 837 (1077)
+.|+|.- .+.+.++...+|.||.++|+++|++. |++++|.= ...+...-+.. +...|.+.|..
T Consensus 5 vKV~f~~-------tIaIrvp~~~~y~~L~~ki~~kLkl~-~e~i~LsY----kde~s~~~v~l-~d~dle~aws~ 67 (80)
T cd06406 5 VKVHFKY-------TVAIQVARGLSYATLLQKISSKLELP-AEHITLSY----KSEASGEDVIL-SDTNMEDVWSQ 67 (80)
T ss_pred EEEEEEE-------EEEEEcCCCCCHHHHHHHHHHHhCCC-chhcEEEe----ccCCCCCccCc-ChHHHHHHHHh
Confidence 5677763 48999999999999999999999985 78887753 23232211222 45778888864
No 76
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=82.37 E-value=1.5 Score=39.71 Aligned_cols=62 Identities=16% Similarity=0.230 Sum_probs=36.6
Q ss_pred eeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCccccccc--ccccccccccCCCCCEEEE
Q 037461 667 YVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPI--EKRCTFRASQLEDGDIICF 734 (1077)
Q Consensus 667 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i--~~~~tf~~~el~~GdIi~f 734 (1077)
|.-.+-+++++++++|...|.+.+++|.+ ...||-+-. +. ..+ ....|+.+.-|.+||+|..
T Consensus 14 G~~Rie~~~~~t~~~L~~kI~~~l~~~~~-~~~L~~~~~--~~---~~l~s~~~~tl~~lglkHGdmlyL 77 (80)
T PF11543_consen 14 GMKRIEVSPSSTLSDLKEKISEQLSIPDS-SQSLSKDRN--NK---EELKSSDSKTLSSLGLKHGDMLYL 77 (80)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHS---TT-T---BSSGG--GG---GCSSS-TT-CCCCT---TT-EEE-
T ss_pred CCEEEEcCCcccHHHHHHHHHHHcCCCCc-ceEEEecCC--CC---cccccCCcCCHHHcCCCCccEEEE
Confidence 55667788999999999999999999977 567776542 22 233 4567888999999999964
No 77
>cd01783 DAGK_delta_RA Ubiquitin-like domain of Diacylgylcerol kinase (DAGK). DAGK_delta_RA Diacylgylcerol kinase (DAGK) phosphorylates the second messenger diacylglycerol to phosphatidic acid as part of a protein kinase C pathway. Nine mammalian DAGK isotypes have been identified, which are classified into five subgroups according to their domain architecture and the DAGK-delta and -theta isozymes, which fall into one such group, contain an RA (Ras-associated) domain. DAGKs also contain a conserved catalytic domain (DAGKc), an assesory domain (DAGKa), and an array of conserved motifs that are likely to play a role in lipid-protein and protein-protein interactions in various DAG/PA-dependent signalling pathways.
Probab=79.90 E-value=7 Score=36.62 Aligned_cols=62 Identities=27% Similarity=0.322 Sum_probs=47.4
Q ss_pred eEEEE--EEcCCCCeEEEEEEEcCCCCCHHHHHHHHhhccccCCCC-ccEEEEEEe--ccEEEEecCCcc
Q 037461 862 TLKVA--FHHATKDEVSVHTIRLPKQSTVGDVINDLKTKVELSQPD-AELRLLEVF--YHKIYKIFPLNE 926 (1077)
Q Consensus 862 ~~kv~--w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~~~~~~-~~lRl~ev~--~~ki~~~~~~~~ 926 (1077)
.+||+ |+... ..-.++.|+++.|+.|++.++..++|+..+. ...+|.||. .+-..++++.++
T Consensus 4 ~iKVY~G~L~~~---~~y~sv~V~~~tt~~dvv~eaL~kfGl~~~~~~~y~LvEV~ld~gv~ER~l~~~E 70 (97)
T cd01783 4 VVKVYPGWLRVG---VAYVSIRVNKDTTVQDVILEVLPLFGLQAECPESFRLIEVLLDRGVVERTVLPQE 70 (97)
T ss_pred eEEEecCccccC---cceEEEEecccchHHHHHHHHHHHhCcccCCccccEEEEEEecCCeeeeeCCCcc
Confidence 46666 65542 3345899999999999999999999998854 689999996 444566666655
No 78
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=77.93 E-value=4.4 Score=35.79 Aligned_cols=47 Identities=28% Similarity=0.453 Sum_probs=36.9
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCcccc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDIV 1030 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~~~ 1030 (1077)
|-.+.+.|.+.+|.+++|++|+++.|++..+ . .++..+++ |+|+..+
T Consensus 10 G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~---q--~L~~~G~~--L~d~~~L 56 (74)
T cd01807 10 GRECSLQVSEKESVSTLKKLVSEHLNVPEEQ---Q--RLLFKGKA--LADDKRL 56 (74)
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCCCHHH---e--EEEECCEE--CCCCCCH
Confidence 8888999999999999999999999998866 3 33444443 6666543
No 79
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=75.63 E-value=3.7 Score=36.89 Aligned_cols=62 Identities=19% Similarity=0.373 Sum_probs=38.0
Q ss_pred EEEEecCCCchhhHHHHHHhcCCCCCCcEE--EEEEeecCCcccccccccccccccccCCCCCEEEEE
Q 037461 670 RLFVKSTGKPMEYLPKLNEMAGYAPDEEID--LYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICFQ 735 (1077)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--lyEEik~~p~~~ie~i~~~~tf~~~el~~GdIi~fQ 735 (1077)
-+.++.+.++++++|.|.+.++.+....-. -|.=.+ ..+ .+++++.|+.++.+.|||+|+-+
T Consensus 16 Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~-~~g---~~L~~~~tL~~~gV~dGd~L~L~ 79 (79)
T PF08817_consen 16 DLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLAR-AGG---RPLDPDQTLADAGVRDGDVLVLR 79 (79)
T ss_dssp EEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG--GGT---EEEETTSBCGGGT--TT-EEEE-
T ss_pred EEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEe-cCC---cccCCcCcHhHcCCCCCCEEEeC
Confidence 356789999999999999999985433211 222221 122 37899999999999999999753
No 80
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=74.96 E-value=6.3 Score=34.32 Aligned_cols=47 Identities=17% Similarity=0.456 Sum_probs=36.9
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCcccc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDIV 1030 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~~~ 1030 (1077)
|--|.+.+.+..|.+++|++|+++.|++..+ .+ ++..+++ |+|+..+
T Consensus 8 g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~---q~--Li~~G~~--L~d~~~l 54 (70)
T cd01798 8 GHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQ---LR--VIFAGKE--LRNTTTI 54 (70)
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCCCHHH---eE--EEECCeE--CCCCCcH
Confidence 7778899999999999999999999998865 34 3444554 7776544
No 81
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=72.79 E-value=6.2 Score=40.91 Aligned_cols=37 Identities=27% Similarity=0.489 Sum_probs=21.5
Q ss_pred ccccceeecccCCcccchhhhhHHHhhh-HHHHHHhcc
Q 037461 193 KKETGYVGLKNQGATCYMNSLLQTLFHI-PYFRKAVYH 229 (1077)
Q Consensus 193 k~~~g~vGL~N~GnTCYmNSvLQ~L~~~-p~fr~~l~~ 229 (1077)
....-+.|+.|.+|+||+||++|.+-.. .+|.+.+|.
T Consensus 28 ~~~~eft~~PN~~dnCWlNaL~QL~~~~d~~~Fd~~Y~ 65 (193)
T PF05408_consen 28 DGKMEFTGLPNNHDNCWLNALLQLFRYVDEPFFDWYYD 65 (193)
T ss_dssp ----EEE----SSSTHHHHHHHHHHHHHT-GTTHHHHT
T ss_pred CcceEEecCCCCCCChHHHHHHHHHHHcCcccchhhcC
Confidence 3444567999999999999999998543 345555654
No 82
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=69.42 E-value=11 Score=33.42 Aligned_cols=71 Identities=17% Similarity=0.321 Sum_probs=51.6
Q ss_pred EEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCC--CCCCcEEEEEEeecCCcccccccccccccccccCCCC
Q 037461 652 LLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGY--APDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDG 729 (1077)
Q Consensus 652 ~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~G 729 (1077)
-+|+|..+-.+ . .+-+..+.+|++|...|.+..|+ |++..-.+|. + ..++...++..+.+++|
T Consensus 2 ~i~vk~~~g~~--~----~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~------G---~~L~d~~~L~~~~i~~~ 66 (77)
T cd01805 2 KITFKTLKQQT--F----PIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYS------G---KILKDDTTLEEYKIDEK 66 (77)
T ss_pred EEEEEeCCCCE--E----EEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEEC------C---EEccCCCCHHHcCCCCC
Confidence 36777765432 1 24578889999999999999999 7776655554 2 23455678888999999
Q ss_pred CEEEEEec
Q 037461 730 DIICFQKS 737 (1077)
Q Consensus 730 dIi~fQ~~ 737 (1077)
++|..-..
T Consensus 67 ~~i~~~~~ 74 (77)
T cd01805 67 DFVVVMVS 74 (77)
T ss_pred CEEEEEEe
Confidence 98877543
No 83
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=69.30 E-value=8.6 Score=33.34 Aligned_cols=69 Identities=19% Similarity=0.285 Sum_probs=51.8
Q ss_pred EEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCCC
Q 037461 651 ILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGD 730 (1077)
Q Consensus 651 ~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~Gd 730 (1077)
+.||+|..+-.+- .+.+..+.+|+++...|.+..|.|++..-.+|. + ..++...++....+++|+
T Consensus 1 i~i~vk~~~g~~~------~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~------g---~~L~d~~~L~~~~i~~~~ 65 (72)
T cd01809 1 IEIKVKTLDSQTH------TFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYS------G---RVLKDDETLSEYKVEDGH 65 (72)
T ss_pred CEEEEEeCCCCEE------EEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC------C---EECCCcCcHHHCCCCCCC
Confidence 3577887764332 356778899999999999999999887665663 2 245666788888999999
Q ss_pred EEEE
Q 037461 731 IICF 734 (1077)
Q Consensus 731 Ii~f 734 (1077)
.|-.
T Consensus 66 ~l~l 69 (72)
T cd01809 66 TIHL 69 (72)
T ss_pred EEEE
Confidence 8743
No 84
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=68.28 E-value=41 Score=32.10 Aligned_cols=65 Identities=25% Similarity=0.392 Sum_probs=54.2
Q ss_pred eccChhhhcccceEEEEEEcCCCCeEEEEEEEcCCCCCHHHHHHHHhhccccCC---CCccEEEEEEec
Q 037461 850 LDIPLPELQCLKTLKVAFHHATKDEVSVHTIRLPKQSTVGDVINDLKTKVELSQ---PDAELRLLEVFY 915 (1077)
Q Consensus 850 L~i~l~elE~~k~~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~~~~---~~~~lRl~ev~~ 915 (1077)
|+.|-.+||=.--+++++...+- ++..--+.|.-+.|+.++++.|.+|+..+. +..+.=||+++.
T Consensus 11 ~s~p~e~lef~gvmrf~~qd~~~-k~atK~VrVsS~~tt~eVI~~LLeKFk~d~~~~s~p~FALYevh~ 78 (112)
T cd01782 11 LSYPTEDLEFHGVMRFYFQDGGE-KVATKCIRVSSTATTRDVIDTLSEKFRPDMRMLSNPTYSLYEVHE 78 (112)
T ss_pred ecCCCcccEEeeEEEEEEEcCCC-cEEEEEEEEecCCCHHHHHHHHHHHhcccccccCCcceEEEEEec
Confidence 67888899999999999998884 566668999999999999999999998541 224788999874
No 85
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=67.50 E-value=16 Score=33.29 Aligned_cols=68 Identities=18% Similarity=0.117 Sum_probs=47.8
Q ss_pred eEEEEEEcCCCCeEEEEEEEcCCCCCHHHHHHHHhhccccCCCCccEEEEE-EeccEEEEecCCcccccc
Q 037461 862 TLKVAFHHATKDEVSVHTIRLPKQSTVGDVINDLKTKVELSQPDAELRLLE-VFYHKIYKIFPLNEKIEN 930 (1077)
Q Consensus 862 ~~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~~~~~~~~lRl~e-v~~~ki~~~~~~~~~i~~ 930 (1077)
.+||+--...... ..-++.|+++.|+.||+..+.+++++.+......||+ ...+...+.+.+++..-.
T Consensus 4 ~lrVy~~~~~~~~-~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~er~L~~~E~pl~ 72 (93)
T PF00788_consen 4 VLRVYDGDGSPGS-TYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVEESGGEERPLDDDECPLQ 72 (93)
T ss_dssp EEEEEETTSSSCC-SEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTEEEEETTTSBHHH
T ss_pred EEEEEcCCCCCCc-cEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCEEEEcCCCCchHH
Confidence 4666664444222 2448999999999999999999999955567899983 445556667766664433
No 86
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=65.52 E-value=11 Score=33.81 Aligned_cols=49 Identities=29% Similarity=0.458 Sum_probs=38.3
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCcccc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDIV 1030 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~~~ 1030 (1077)
|-.|.+.+.+..|.+++|++|+++.|++. ++.|++++..++ -|.|+..+
T Consensus 12 G~~~~~~v~~~~TV~~lK~~I~~~~~i~~---~~qrL~~~~~G~--~L~D~~tL 60 (80)
T cd01792 12 GNEFLVSLRDSMTVSELKQQIAQKIGVPA---FQQRLAHLDSRE--VLQDGVPL 60 (80)
T ss_pred CCEEEEEcCCCCcHHHHHHHHHHHhCCCH---HHEEEEeccCCC--CCCCCCCH
Confidence 88899999999999999999999999866 556776554333 46666543
No 87
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=63.99 E-value=14 Score=33.74 Aligned_cols=67 Identities=16% Similarity=0.200 Sum_probs=45.3
Q ss_pred EEEEEEcCCCCeEEEEEEEcCCCCCHHHHHHHHhhccccCCCCccEEEEEEeccE-EEEecCCcccccc
Q 037461 863 LKVAFHHATKDEVSVHTIRLPKQSTVGDVINDLKTKVELSQPDAELRLLEVFYHK-IYKIFPLNEKIEN 930 (1077)
Q Consensus 863 ~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~~~~~~~~lRl~ev~~~k-i~~~~~~~~~i~~ 930 (1077)
|+|....+.... ...+..+|++.||++|-.+|.+.+|.+++.-+|.++...++. +...-+.+..+..
T Consensus 2 v~l~It~~~~~~-~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~ 69 (87)
T PF14560_consen 2 VKLFITSSNSKQ-RSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGS 69 (87)
T ss_dssp EEEEEEESSSSS-SEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCH
T ss_pred EEEEEEeCCCCC-eeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeec
Confidence 566777766642 345789999999999999999999999888777777433333 4333333334433
No 88
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=63.40 E-value=9.7 Score=33.99 Aligned_cols=33 Identities=12% Similarity=0.227 Sum_probs=30.4
Q ss_pred ccCcceEEEeccCCcHHHHHHHHHHHhCCCccc
Q 037461 975 NFGEPFFLVIHEGETLQEIKVRIQRKLQVPDEE 1007 (1077)
Q Consensus 975 ~fGiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~ 1007 (1077)
++|-.+.+.+.+..|..++|++|+.+.|++...
T Consensus 10 ~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~ 42 (75)
T cd01799 10 SHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAV 42 (75)
T ss_pred cCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHH
Confidence 459999999999999999999999999998764
No 89
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=63.16 E-value=9.5 Score=32.42 Aligned_cols=31 Identities=35% Similarity=0.570 Sum_probs=28.8
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCccc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEE 1007 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~ 1007 (1077)
|-++.+.+.+.+|+.++|++|++++|++...
T Consensus 7 ~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~ 37 (69)
T cd01769 7 GKTFELEVSPDDTVAELKAKIAAKEGVPPEQ 37 (69)
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCcChHH
Confidence 8899999999999999999999999987754
No 90
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=62.34 E-value=21 Score=32.65 Aligned_cols=68 Identities=18% Similarity=0.143 Sum_probs=47.4
Q ss_pred EEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCCCEEEEEecC
Q 037461 670 RLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICFQKST 738 (1077)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~GdIi~fQ~~~ 738 (1077)
-.-++.+.+|++|-..|..+.|.|++.....+..-+ .....+...+...++....+.||++|-+.-..
T Consensus 17 ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~-~~~~~~~~~dd~~~L~~y~~~dg~~i~V~D~~ 84 (87)
T PF14560_consen 17 EKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDK-DDSKIEELDDDDATLGSYGIKDGMRIHVVDTN 84 (87)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TS-SSSEEEESSGSSSBCCHHT-STTEEEEEEE-T
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecC-CCccccccCCCccEeecCCCCCCCEEEEEeCC
Confidence 356889999999999999999999988855544221 23333333455678888889999999887543
No 91
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=62.27 E-value=10 Score=32.60 Aligned_cols=57 Identities=19% Similarity=0.327 Sum_probs=47.3
Q ss_pred EEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCCCEEEEEe
Q 037461 671 LFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICFQK 736 (1077)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~GdIi~fQ~ 736 (1077)
+-|+.+.+|.+|-..|.+..|+|++....+|.- ..++...++....+.+|++|..-.
T Consensus 10 ~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G---------~~L~d~~tL~~~~i~~~~~I~l~~ 66 (69)
T PF00240_consen 10 LEVDPDDTVADLKQKIAEETGIPPEQQRLIYNG---------KELDDDKTLSDYGIKDGSTIHLVI 66 (69)
T ss_dssp EEEETTSBHHHHHHHHHHHHTSTGGGEEEEETT---------EEESTTSBTGGGTTSTTEEEEEEE
T ss_pred EEECCCCCHHHhhhhcccccccccccceeeeee---------ecccCcCcHHHcCCCCCCEEEEEE
Confidence 457899999999999999999999888777752 234677899999999999987643
No 92
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=61.90 E-value=13 Score=32.87 Aligned_cols=68 Identities=10% Similarity=0.112 Sum_probs=51.4
Q ss_pred EEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCCCE
Q 037461 652 LLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDI 731 (1077)
Q Consensus 652 ~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~GdI 731 (1077)
.+|+|..+-.+ +. +-|..+.+|.++...|.+..|+|++..-.+|.- ..++...++....|++|+.
T Consensus 2 ~i~vk~~~G~~--~~----l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G---------~~L~d~~~L~~~~i~~~~~ 66 (74)
T cd01807 2 FLTVKLLQGRE--CS----LQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKG---------KALADDKRLSDYSIGPNAK 66 (74)
T ss_pred EEEEEeCCCCE--EE----EEECCCCcHHHHHHHHHHHHCCCHHHeEEEECC---------EECCCCCCHHHCCCCCCCE
Confidence 46777775432 22 357889999999999999999999877666652 2355668999999999998
Q ss_pred EEE
Q 037461 732 ICF 734 (1077)
Q Consensus 732 i~f 734 (1077)
|..
T Consensus 67 l~l 69 (74)
T cd01807 67 LNL 69 (74)
T ss_pred EEE
Confidence 843
No 93
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=61.70 E-value=25 Score=31.21 Aligned_cols=59 Identities=12% Similarity=0.179 Sum_probs=40.2
Q ss_pred EEEEEEcCCCCeEEEEEEEcCCCCCHHHHHHHHhhccccCCCCccEEEEEEeccEEEEecCCccccccc
Q 037461 863 LKVAFHHATKDEVSVHTIRLPKQSTVGDVINDLKTKVELSQPDAELRLLEVFYHKIYKIFPLNEKIENI 931 (1077)
Q Consensus 863 ~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~~~~~~~~lRl~ev~~~ki~~~~~~~~~i~~i 931 (1077)
++|+..+-.-+ .+.+-++.+.||.||.++++++.+++.+. +||. +.|| ++..+.++++.
T Consensus 2 ~~i~vkt~~Gk---~~~~~v~~~~TV~~LK~~I~~~~~~~~~~--qrLi--~~Gk---~L~D~~tL~~y 60 (73)
T cd01791 2 IEVVCNDRLGK---KVRVKCNPDDTIGDLKKLIAAQTGTRPEK--IVLK--KWYT---IFKDHISLGDY 60 (73)
T ss_pred EEEEEECCCCC---EEEEEeCCCCcHHHHHHHHHHHhCCChHH--EEEE--eCCc---CCCCCCCHHHc
Confidence 34555443333 35668899999999999998888886655 6774 4565 56766666553
No 94
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=60.12 E-value=17 Score=31.80 Aligned_cols=71 Identities=18% Similarity=0.275 Sum_probs=51.7
Q ss_pred EEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCCCE
Q 037461 652 LLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDI 731 (1077)
Q Consensus 652 ~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~GdI 731 (1077)
-|++|..+-.+-. +-++.+.+|++|...|.+..|+|++..-.+|.- ..++...++....+++|+.
T Consensus 2 ~i~v~~~~g~~~~------~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g---------~~L~d~~tl~~~~i~~g~~ 66 (76)
T cd01806 2 LIKVKTLTGKEIE------IDIEPTDKVERIKERVEEKEGIPPQQQRLIYSG---------KQMNDDKTAADYKLEGGSV 66 (76)
T ss_pred EEEEEeCCCCEEE------EEECCCCCHHHHHHHHhHhhCCChhhEEEEECC---------eEccCCCCHHHcCCCCCCE
Confidence 3566666543322 457889999999999999999999976555542 2345567888899999999
Q ss_pred EEEEec
Q 037461 732 ICFQKS 737 (1077)
Q Consensus 732 i~fQ~~ 737 (1077)
|-+-..
T Consensus 67 i~l~~~ 72 (76)
T cd01806 67 LHLVLA 72 (76)
T ss_pred EEEEEE
Confidence 866543
No 95
>PTZ00044 ubiquitin; Provisional
Probab=59.42 E-value=13 Score=32.80 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=28.6
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCccc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEE 1007 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~ 1007 (1077)
|-.+.+.+.+.+|..++|+||+++.|++..+
T Consensus 10 G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~ 40 (76)
T PTZ00044 10 GKKQSFNFEPDNTVQQVKMALQEKEGIDVKQ 40 (76)
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCCCHHH
Confidence 7889999999999999999999999998754
No 96
>PTZ00044 ubiquitin; Provisional
Probab=59.07 E-value=15 Score=32.35 Aligned_cols=70 Identities=11% Similarity=0.138 Sum_probs=51.4
Q ss_pred EEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCCCE
Q 037461 652 LLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDI 731 (1077)
Q Consensus 652 ~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~GdI 731 (1077)
-||+|..+-.+-. +-+..+.+|.++...|.+..|+|++..-.+|.- ..++...++....+++|++
T Consensus 2 ~i~vk~~~G~~~~------l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g---------~~L~d~~~l~~~~i~~~~~ 66 (76)
T PTZ00044 2 QILIKTLTGKKQS------FNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSG---------KQMSDDLKLSDYKVVPGST 66 (76)
T ss_pred EEEEEeCCCCEEE------EEECCCCcHHHHHHHHHHHHCCCHHHeEEEECC---------EEccCCCcHHHcCCCCCCE
Confidence 3677766544322 356788999999999999999999887666642 2345667888888999998
Q ss_pred EEEEe
Q 037461 732 ICFQK 736 (1077)
Q Consensus 732 i~fQ~ 736 (1077)
|-.-.
T Consensus 67 i~l~~ 71 (76)
T PTZ00044 67 IHMVL 71 (76)
T ss_pred EEEEE
Confidence 86643
No 97
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=58.81 E-value=12 Score=32.93 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=44.7
Q ss_pred EEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCCCEEEEE
Q 037461 671 LFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICFQ 735 (1077)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~GdIi~fQ 735 (1077)
+-|..+.+|.++...|.+..|+|++..-.+|. + ..+....++....+++|+.|..-
T Consensus 13 l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~------G---~~L~D~~tL~~~~i~~~~tl~l~ 68 (74)
T cd01810 13 YEVQLTQTVATLKQQVSQRERVQADQFWLSFE------G---RPMEDEHPLGEYGLKPGCTVFMN 68 (74)
T ss_pred EEECCcChHHHHHHHHHHHhCCCHHHeEEEEC------C---EECCCCCCHHHcCCCCCCEEEEE
Confidence 45788899999999999999999887766654 2 23455688988999999998654
No 98
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=57.34 E-value=15 Score=31.63 Aligned_cols=31 Identities=26% Similarity=0.571 Sum_probs=28.4
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCccc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEE 1007 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~ 1007 (1077)
|--|.+.+.+.+|..++|++|++++|++..+
T Consensus 5 g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~ 35 (69)
T PF00240_consen 5 GKTFTLEVDPDDTVADLKQKIAEETGIPPEQ 35 (69)
T ss_dssp SEEEEEEEETTSBHHHHHHHHHHHHTSTGGG
T ss_pred CcEEEEEECCCCCHHHhhhhccccccccccc
Confidence 7789999999999999999999999988754
No 99
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=55.60 E-value=20 Score=31.14 Aligned_cols=36 Identities=14% Similarity=0.258 Sum_probs=31.4
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEE
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFA 1014 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a 1014 (1077)
|-++.|.|++..+|+.+.++++++.|++.+ ++++|.
T Consensus 10 ~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~--~~~~l~ 45 (72)
T PF11976_consen 10 GKEIKFKVKPTTTVSKLIEKYCEKKGIPPE--ESIRLI 45 (72)
T ss_dssp SEEEEEEEETTSCCHHHHHHHHHHHTTTT---TTEEEE
T ss_pred CCEEEEEECCCCcHHHHHHHHHHhhCCCcc--ceEEEE
Confidence 779999999999999999999999999986 556653
No 100
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=54.73 E-value=16 Score=32.40 Aligned_cols=45 Identities=16% Similarity=0.151 Sum_probs=35.1
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCcc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTD 1028 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~ 1028 (1077)
|-+|.+.+.+..|.+++|++|+++.|++.. +.|+. ..+ .-|.|+.
T Consensus 11 Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~---~qrLi--~~G--k~L~D~~ 55 (73)
T cd01791 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRPE---KIVLK--KWY--TIFKDHI 55 (73)
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCCChH---HEEEE--eCC--cCCCCCC
Confidence 899999999999999999999999998764 34543 233 3466664
No 101
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=54.72 E-value=22 Score=31.05 Aligned_cols=69 Identities=14% Similarity=0.279 Sum_probs=49.7
Q ss_pred EEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCCCEE
Q 037461 653 LFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDII 732 (1077)
Q Consensus 653 ~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~GdIi 732 (1077)
||+|..+-. ++ .+-+.++.+|++|...|.+..|+|++..-..|. + ..++...++....+++|++|
T Consensus 3 i~v~~~~g~--~~----~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~------g---~~L~d~~~L~~~~i~~~~~i 67 (76)
T cd01803 3 IFVKTLTGK--TI----TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNIQKESTL 67 (76)
T ss_pred EEEEcCCCC--EE----EEEECCcCcHHHHHHHHHHHhCCCHHHeEEEEC------C---EECCCCCcHHHcCCCCCCEE
Confidence 566655532 22 256788999999999999999999876544443 2 23556678888899999988
Q ss_pred EEEe
Q 037461 733 CFQK 736 (1077)
Q Consensus 733 ~fQ~ 736 (1077)
..-.
T Consensus 68 ~l~~ 71 (76)
T cd01803 68 HLVL 71 (76)
T ss_pred EEEE
Confidence 7644
No 102
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=54.46 E-value=16 Score=32.50 Aligned_cols=48 Identities=19% Similarity=0.205 Sum_probs=35.2
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCcc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTD 1028 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~ 1028 (1077)
|--|-+.+.+.+|++++|++|++++||+.. +-|+-.... ++.-+.|+.
T Consensus 9 g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~---~QKLi~~~~-~Gk~l~D~~ 56 (74)
T cd01813 9 GQEYSVTTLSEDTVLDLKQFIKTLTGVLPE---RQKLLGLKV-KGKPAEDDV 56 (74)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCHH---HEEEEeecc-cCCcCCCCc
Confidence 777889999999999999999999999874 466543111 233355554
No 103
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=54.32 E-value=47 Score=30.20 Aligned_cols=66 Identities=11% Similarity=0.106 Sum_probs=43.2
Q ss_pred EEEEEEcCCCCeEEEEEEEcCCCCCHHHHHHHHhhccccCCCCccEEEEEEeccEEEEecCCcccccc
Q 037461 863 LKVAFHHATKDEVSVHTIRLPKQSTVGDVINDLKTKVELSQPDAELRLLEVFYHKIYKIFPLNEKIEN 930 (1077)
Q Consensus 863 ~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~~~~~~~~lRl~ev~~~ki~~~~~~~~~i~~ 930 (1077)
++|....+.- ....+..+|++.||++|-++|.+..+.+++..+|-++...+..+..+-+.+..+..
T Consensus 2 v~v~i~~~~~--~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~ 67 (84)
T cd01789 2 VTVNITSSAD--SFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGS 67 (84)
T ss_pred EEEEEEeCCC--ceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeee
Confidence 4555555542 23457899999999999999999999988876665555544444333333334433
No 104
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=54.17 E-value=14 Score=32.18 Aligned_cols=54 Identities=13% Similarity=0.210 Sum_probs=43.1
Q ss_pred EEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCCCEEE
Q 037461 671 LFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIIC 733 (1077)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~GdIi~ 733 (1077)
+-+.++.+|.++...|.+..|+|++..-.+|.- .+++...++....+++|.+|-
T Consensus 13 ~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G---------~~L~d~~~l~~~~i~~~stl~ 66 (70)
T cd01798 13 VEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAG---------KELRNTTTIQECDLGQQSILH 66 (70)
T ss_pred EEECCCChHHHHHHHHHHHHCCCHHHeEEEECC---------eECCCCCcHHHcCCCCCCEEE
Confidence 457889999999999999999998766555542 235667889888999999873
No 105
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=53.90 E-value=16 Score=32.11 Aligned_cols=45 Identities=20% Similarity=0.293 Sum_probs=35.3
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCcc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTD 1028 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~ 1028 (1077)
|--+.+.+.+.+|.+++|++|+++.|+|..+. + |+..++ .|+|+.
T Consensus 9 g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q---~--Li~~Gk--~L~D~~ 53 (71)
T cd01796 9 ETTFSLDVDPDLELENFKALCEAESGIPASQQ---Q--LIYNGR--ELVDNK 53 (71)
T ss_pred CCEEEEEECCcCCHHHHHHHHHHHhCCCHHHe---E--EEECCe--EccCCc
Confidence 77788999999999999999999999998762 3 333444 466653
No 106
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=52.71 E-value=17 Score=31.74 Aligned_cols=31 Identities=26% Similarity=0.561 Sum_probs=28.4
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCccc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEE 1007 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~ 1007 (1077)
|-.|.+.+.+.+|.+++|++|++++|++..+
T Consensus 10 g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~ 40 (76)
T cd01803 10 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 40 (76)
T ss_pred CCEEEEEECCcCcHHHHHHHHHHHhCCCHHH
Confidence 7789999999999999999999999998743
No 107
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=52.31 E-value=17 Score=31.95 Aligned_cols=47 Identities=19% Similarity=0.251 Sum_probs=37.5
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCcccc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDIV 1030 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~~~ 1030 (1077)
|-.|.+.+.+.+|..++|++|+++.|++..+. | ++..+++ |+|+..+
T Consensus 8 G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q---~--Li~~G~~--L~D~~~l 54 (70)
T cd01794 8 GKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQ---R--WFFSGKL--LTDKTRL 54 (70)
T ss_pred CCEEEEEECCcChHHHHHHHHHHHhCCCHHHe---E--EEECCeE--CCCCCCH
Confidence 99999999999999999999999999988663 3 3444544 7776544
No 108
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=51.99 E-value=37 Score=28.26 Aligned_cols=56 Identities=14% Similarity=0.254 Sum_probs=38.7
Q ss_pred eEEEEEEcCCCCeEEEEEEEcCCCCCHHHHHHHHhhccccCCCCccEEEEEEeccEEEEecCCcccccc
Q 037461 862 TLKVAFHHATKDEVSVHTIRLPKQSTVGDVINDLKTKVELSQPDAELRLLEVFYHKIYKIFPLNEKIEN 930 (1077)
Q Consensus 862 ~~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~~~~~~~~lRl~ev~~~ki~~~~~~~~~i~~ 930 (1077)
++.|.|.+ + .+.+-|+.+.||++|.+.+..+.+++.+ .+||+ ++|+. +..+.++.+
T Consensus 2 ~i~vk~~~-~-----~~~~~v~~~~tv~~lk~~i~~~~~~~~~--~~~L~--~~g~~---L~d~~tL~~ 57 (64)
T smart00213 2 ELTVKTLD-G-----TITLEVKPSDTVSELKEKIAELTGIPVE--QQRLI--YKGKV---LEDDRTLAD 57 (64)
T ss_pred EEEEEECC-c-----eEEEEECCCCcHHHHHHHHHHHHCCCHH--HEEEE--ECCEE---CCCCCCHHH
Confidence 45666665 2 4568899999999999999999988654 36665 44653 554555443
No 109
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=51.59 E-value=19 Score=30.04 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=25.5
Q ss_pred ceEEEeccCCcHHHHHHHHHHHhCCCcc
Q 037461 979 PFFLVIHEGETLQEIKVRIQRKLQVPDE 1006 (1077)
Q Consensus 979 PF~~~i~~~E~~~~~k~ri~~~~~~~~~ 1006 (1077)
.+-+.|.+..|.+++|++|++++|++..
T Consensus 11 ~~~~~v~~~~tv~~lk~~i~~~~~~~~~ 38 (64)
T smart00213 11 TITLEVKPSDTVSELKEKIAELTGIPVE 38 (64)
T ss_pred eEEEEECCCCcHHHHHHHHHHHHCCCHH
Confidence 5678899999999999999999999764
No 110
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=51.50 E-value=21 Score=31.35 Aligned_cols=55 Identities=13% Similarity=0.210 Sum_probs=43.6
Q ss_pred EEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccc-cccccccCCCCCEEEE
Q 037461 671 LFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKR-CTFRASQLEDGDIICF 734 (1077)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~-~tf~~~el~~GdIi~f 734 (1077)
+-|+++.+|+++...|.+..|+|++....+|.- .+++.. .++..+.+++|+.|..
T Consensus 14 l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~G---------k~L~D~~~~L~~~gi~~~~~l~l 69 (71)
T cd01796 14 LDVDPDLELENFKALCEAESGIPASQQQLIYNG---------RELVDNKRLLALYGVKDGDLVVL 69 (71)
T ss_pred EEECCcCCHHHHHHHHHHHhCCCHHHeEEEECC---------eEccCCcccHHHcCCCCCCEEEE
Confidence 567888999999999999999999887666652 123333 5788889999999875
No 111
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=50.60 E-value=22 Score=31.31 Aligned_cols=47 Identities=15% Similarity=0.283 Sum_probs=36.4
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCcccc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDIV 1030 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~~~ 1030 (1077)
|--|-+.+.+..|..++|++|+++.|++..++ ++ +..+ +-|+|+..+
T Consensus 8 g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q---~L--~~~G--~~L~D~~tL 54 (74)
T cd01810 8 GRSSIYEVQLTQTVATLKQQVSQRERVQADQF---WL--SFEG--RPMEDEHPL 54 (74)
T ss_pred CCEEEEEECCcChHHHHHHHHHHHhCCCHHHe---EE--EECC--EECCCCCCH
Confidence 88889999999999999999999999987654 33 2333 447776544
No 112
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=50.14 E-value=40 Score=30.23 Aligned_cols=57 Identities=19% Similarity=0.202 Sum_probs=46.5
Q ss_pred EecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCCCEEEEEecC
Q 037461 673 VKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICFQKST 738 (1077)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~GdIi~fQ~~~ 738 (1077)
+..+.+|+++...|.+..|+|++..-.+|. + ..++...++....|++|++|.....+
T Consensus 19 v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~------G---k~L~D~~tL~~y~i~~~~~i~l~~~~ 75 (78)
T cd01797 19 LSRLTKVEELREKIQELFNVEPECQRLFYR------G---KQMEDGHTLFDYNVGLNDIIQLLVRQ 75 (78)
T ss_pred cCCcCcHHHHHHHHHHHhCCCHHHeEEEeC------C---EECCCCCCHHHcCCCCCCEEEEEEec
Confidence 567889999999999999999988766664 2 23567789999999999999887653
No 113
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=48.71 E-value=22 Score=32.34 Aligned_cols=26 Identities=15% Similarity=0.296 Sum_probs=23.1
Q ss_pred eEEEeccCCcHHHHHHHHHHHhCCCc
Q 037461 980 FFLVIHEGETLQEIKVRIQRKLQVPD 1005 (1077)
Q Consensus 980 F~~~i~~~E~~~~~k~ri~~~~~~~~ 1005 (1077)
=.|++.++.+|.+++++|++|+++.+
T Consensus 12 ~r~~l~~~~~~~~L~~~i~~r~~~~~ 37 (82)
T cd06407 12 IRFRLPPSWGFTELKQEIAKRFKLDD 37 (82)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCC
Confidence 36788899999999999999999864
No 114
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=47.57 E-value=23 Score=31.00 Aligned_cols=31 Identities=23% Similarity=0.450 Sum_probs=28.5
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCccc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEE 1007 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~ 1007 (1077)
|-.+.+.+.+..|.+++|++|+++.|++..+
T Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~ 40 (76)
T cd01806 10 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQ 40 (76)
T ss_pred CCEEEEEECCCCCHHHHHHHHhHhhCCChhh
Confidence 7778899999999999999999999998864
No 115
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=46.23 E-value=25 Score=30.99 Aligned_cols=55 Identities=15% Similarity=0.199 Sum_probs=44.9
Q ss_pred EEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCCCEEEE
Q 037461 671 LFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICF 734 (1077)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~GdIi~f 734 (1077)
+-|.++.+|+++...|.+..|+|++..-.+|.= ..++...++..+.+++|++|-.
T Consensus 13 l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~G---------k~L~D~~tL~~~~i~~~~tl~l 67 (74)
T cd01793 13 LEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAG---------VPLEDDATLGQCGVEELCTLEV 67 (74)
T ss_pred EEECCcCcHHHHHHHHHhhhCCCHHHEEEEECC---------eECCCCCCHHHcCCCCCCEEEE
Confidence 467899999999999999999999887766652 2356678998899999998743
No 116
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=46.21 E-value=26 Score=27.82 Aligned_cols=31 Identities=29% Similarity=0.621 Sum_probs=27.4
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCccc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEE 1007 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~ 1007 (1077)
|..+.+.+.++.|+.++++.|.+++|++..+
T Consensus 7 ~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~ 37 (69)
T cd00196 7 GKTVELLVPSGTTVADLKEKLAKKLGLPPEQ 37 (69)
T ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHCcChHH
Confidence 8888999999999999999999999965543
No 117
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=45.13 E-value=44 Score=31.78 Aligned_cols=74 Identities=12% Similarity=0.176 Sum_probs=55.2
Q ss_pred CCcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCC
Q 037461 648 KEDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLE 727 (1077)
Q Consensus 648 ~~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~ 727 (1077)
.+.+-||+|...-.+-. +-|..+.+|++|...|.+.-|+|++..-.+|.- ..++...++....|+
T Consensus 25 ~~~M~I~Vk~l~G~~~~------leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~G---------k~L~D~~tL~dy~I~ 89 (103)
T cd01802 25 YDTMELFIETLTGTCFE------LRVSPFETVISVKAKIQRLEGIPVAQQHLIWNN---------MELEDEYCLNDYNIS 89 (103)
T ss_pred CCCEEEEEEcCCCCEEE------EEeCCCCcHHHHHHHHHHHhCCChHHEEEEECC---------EECCCCCcHHHcCCC
Confidence 34577888877654322 367889999999999999999999877666652 235666788888899
Q ss_pred CCCEEEEEe
Q 037461 728 DGDIICFQK 736 (1077)
Q Consensus 728 ~GdIi~fQ~ 736 (1077)
+|+.|-...
T Consensus 90 ~~stL~l~~ 98 (103)
T cd01802 90 EGCTLKLVL 98 (103)
T ss_pred CCCEEEEEE
Confidence 999886543
No 118
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=45.10 E-value=25 Score=30.35 Aligned_cols=31 Identities=23% Similarity=0.258 Sum_probs=28.4
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCccc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEE 1007 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~ 1007 (1077)
|-.+-+.+.+.+|..++|++|+++.|++...
T Consensus 9 g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~ 39 (71)
T cd01812 9 GESHDLSISSQATFGDLKKMLAPVTGVEPRD 39 (71)
T ss_pred CEEEEEEECCCCcHHHHHHHHHHhhCCChHH
Confidence 7778889999999999999999999998865
No 119
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=42.59 E-value=84 Score=29.09 Aligned_cols=69 Identities=16% Similarity=0.175 Sum_probs=45.8
Q ss_pred EEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCccccccc-ccccccccccCCCCCEEEEEecC
Q 037461 665 LRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPI-EKRCTFRASQLEDGDIICFQKST 738 (1077)
Q Consensus 665 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i-~~~~tf~~~el~~GdIi~fQ~~~ 738 (1077)
+.-+-+...++.++|+.+...+++++..+ ++..||.-- .++.. |.+ ++..|+..+.|.+|..|+++...
T Consensus 12 l~~~~t~~FSk~DTI~~v~~~~rklf~i~--~E~RLW~~~--~~~~~-e~L~~~~~Tv~da~L~~gQ~vliE~rn 81 (88)
T PF14836_consen 12 LQSVLTKQFSKTDTIGFVEKEMRKLFNIQ--EETRLWNKY--SENSY-ELLNNPEITVEDAGLYDGQVVLIEERN 81 (88)
T ss_dssp CCEEEEEEE-TTSBHHHHHHHHHHHCT-T--S-EEEEEEC--TTTCE-EEE--TTSBTTTTT--TTEEEEEEE--
T ss_pred cccHhHhhccccChHHHHHHHHHHHhCCC--ccceehhcc--CCcch-hhhCCCCccHHHccCcCCCEEEEEeec
Confidence 33344556789999999999999999995 445666544 24433 655 45579999999999999998764
No 120
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=42.45 E-value=34 Score=32.57 Aligned_cols=47 Identities=26% Similarity=0.261 Sum_probs=36.4
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCcccc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDIV 1030 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~~~ 1030 (1077)
|-.+.+.|.+.+|.+++|++|+++.|++..+ .|+ +..++ -|+|+..+
T Consensus 37 G~~~~leV~~~~TV~~lK~kI~~~~gip~~~---QrL--i~~Gk--~L~D~~tL 83 (103)
T cd01802 37 GTCFELRVSPFETVISVKAKIQRLEGIPVAQ---QHL--IWNNM--ELEDEYCL 83 (103)
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCCChHH---EEE--EECCE--ECCCCCcH
Confidence 8899999999999999999999999998743 343 33444 37776543
No 121
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=42.15 E-value=30 Score=30.94 Aligned_cols=44 Identities=30% Similarity=0.458 Sum_probs=34.1
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDT 1027 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~ 1027 (1077)
|-+|-+.+.+..|.+++|++|+++.|++.. ..|+. ..++ -|.|+
T Consensus 11 G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~---~qrL~--~~Gk--~L~d~ 54 (78)
T cd01804 11 GTRFDLSVPPDETVEGLKKRISQRLKVPKE---RLALL--HRET--RLSSG 54 (78)
T ss_pred CCEEEEEECCcCHHHHHHHHHHHHhCCChH---HEEEE--ECCc--CCCCC
Confidence 889999999999999999999999998663 34543 2333 36665
No 122
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=42.03 E-value=26 Score=36.05 Aligned_cols=28 Identities=25% Similarity=0.513 Sum_probs=25.5
Q ss_pred cccCcceEEEeccCCcHHHHHHHHHHHhC
Q 037461 974 QNFGEPFFLVIHEGETLQEIKVRIQRKLQ 1002 (1077)
Q Consensus 974 ~~fGiPF~~~i~~~E~~~~~k~ri~~~~~ 1002 (1077)
+-||.||++.++ |.+-.++-.-+++|++
T Consensus 105 ~kFGfpFii~v~-g~s~~~IL~~l~~Rl~ 132 (158)
T TIGR03180 105 EKFGRIFLIRAA-GRSAEEMLDALQARLP 132 (158)
T ss_pred HHCCCeEEEeeC-CCCHHHHHHHHHHHhC
Confidence 468999999999 9999999999999987
No 123
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=41.64 E-value=62 Score=28.98 Aligned_cols=50 Identities=12% Similarity=0.151 Sum_probs=35.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhccccCCCCccEEEEEEeccEEEEecCCccccccc
Q 037461 877 VHTIRLPKQSTVGDVINDLKTKVELSQPDAELRLLEVFYHKIYKIFPLNEKIENI 931 (1077)
Q Consensus 877 ~~~~~v~k~~tv~dll~~l~~~~~~~~~~~~lRl~ev~~~ki~~~~~~~~~i~~i 931 (1077)
.+.+-++.+.||.||.+++.++.+++.+ +.||.-++.|| ++..+.++.+.
T Consensus 14 ~~~~~v~~~~TV~~lK~~I~~~~~i~~~--~qrL~~~~~G~---~L~D~~tL~~~ 63 (80)
T cd01792 14 EFLVSLRDSMTVSELKQQIAQKIGVPAF--QQRLAHLDSRE---VLQDGVPLVSQ 63 (80)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCHH--HEEEEeccCCC---CCCCCCCHHHc
Confidence 3567889999999999999988887543 46775455666 45555555543
No 124
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=41.37 E-value=33 Score=31.08 Aligned_cols=35 Identities=17% Similarity=0.375 Sum_probs=28.4
Q ss_pred ceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEE
Q 037461 979 PFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFL 1016 (1077)
Q Consensus 979 PF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~ 1016 (1077)
=+.+++.+|=+|+++++.|.+||+++..+ +++..-
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~---i~LsYk 46 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEH---ITLSYK 46 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchh---cEEEec
Confidence 47788999999999999999999998644 454433
No 125
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=41.33 E-value=37 Score=30.08 Aligned_cols=58 Identities=19% Similarity=0.198 Sum_probs=46.2
Q ss_pred EEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCCCEEEEEec
Q 037461 671 LFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICFQKS 737 (1077)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~GdIi~fQ~~ 737 (1077)
+-++.+.+|.++...|....|+|++..-.+|.= ..++...++....+++|++|..-..
T Consensus 12 l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G---------~~L~d~~tL~~~~i~~g~~l~v~~~ 69 (76)
T cd01800 12 FTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEG---------IFIKDSNSLAYYNLANGTIIHLQLK 69 (76)
T ss_pred EEECCCCcHHHHHHHHHHHHCCCHHHEEEEECC---------EEcCCCCcHHHcCCCCCCEEEEEEe
Confidence 457889999999999999999999887666642 1345567898899999999976543
No 126
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=41.10 E-value=30 Score=31.32 Aligned_cols=29 Identities=24% Similarity=0.427 Sum_probs=22.1
Q ss_pred eEEEeccCCcHHHHHHHHHHHhCCCcccc
Q 037461 980 FFLVIHEGETLQEIKVRIQRKLQVPDEEF 1008 (1077)
Q Consensus 980 F~~~i~~~E~~~~~k~ri~~~~~~~~~~f 1008 (1077)
|.+.+.++.|++++++.|++.|+++...|
T Consensus 16 ~Rie~~~~~t~~~L~~kI~~~l~~~~~~~ 44 (80)
T PF11543_consen 16 KRIEVSPSSTLSDLKEKISEQLSIPDSSQ 44 (80)
T ss_dssp EEEEE-TTSBHHHHHHHHHHHS---TTT-
T ss_pred EEEEcCCcccHHHHHHHHHHHcCCCCcce
Confidence 67889999999999999999999998743
No 127
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=40.79 E-value=43 Score=28.86 Aligned_cols=55 Identities=16% Similarity=0.256 Sum_probs=42.4
Q ss_pred EEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCCCEEEE
Q 037461 671 LFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICF 734 (1077)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~GdIi~f 734 (1077)
+-++.+.+|.+|...|.+..|+|++..-.+|. . ..++...++....+.+|+.|..
T Consensus 14 i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~-----g----~~l~d~~~L~~~~i~~g~~l~v 68 (71)
T cd01812 14 LSISSQATFGDLKKMLAPVTGVEPRDQKLIFK-----G----KERDDAETLDMSGVKDGSKVML 68 (71)
T ss_pred EEECCCCcHHHHHHHHHHhhCCChHHeEEeeC-----C----cccCccCcHHHcCCCCCCEEEE
Confidence 45788999999999999999999887655543 1 1234567888888999998754
No 128
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=39.90 E-value=44 Score=28.80 Aligned_cols=30 Identities=20% Similarity=0.393 Sum_probs=26.5
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDE 1006 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~ 1006 (1077)
|--+-+.+.+..|.+++|++|++++|++..
T Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~ 39 (72)
T cd01809 10 SQTHTFTVEEEITVLDLKEKIAEEVGIPVE 39 (72)
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCcCHH
Confidence 556778899999999999999999999754
No 129
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=38.37 E-value=36 Score=30.37 Aligned_cols=57 Identities=14% Similarity=0.068 Sum_probs=42.8
Q ss_pred EEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCC-CCCEEEEE
Q 037461 670 RLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLE-DGDIICFQ 735 (1077)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~-~GdIi~fQ 735 (1077)
.+.+.++.+|++|...|.+..|+|++..-. |.- .. ..+...++....++ +||++--+
T Consensus 16 ~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G-----~~---L~dD~~tL~~ygi~~~g~~~~l~ 73 (75)
T cd01799 16 WLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIG-----QR---LARDQETLYSHGIRTNGDSAFLY 73 (75)
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcC-----Ce---eCCCcCCHHHcCCCCCCCEEEEE
Confidence 356788899999999999999999987654 531 11 12455788888888 89987643
No 130
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=38.30 E-value=1.1e+02 Score=27.66 Aligned_cols=63 Identities=16% Similarity=0.259 Sum_probs=40.0
Q ss_pred EEEEEEcCCCCeEEEEEEEcCCCCCHHHHHHHHhhccccCCCCccEEEEEEeccEEEEecCCccccccc
Q 037461 863 LKVAFHHATKDEVSVHTIRLPKQSTVGDVINDLKTKVELSQPDAELRLLEVFYHKIYKIFPLNEKIENI 931 (1077)
Q Consensus 863 ~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~~~~~~~~lRl~ev~~~ki~~~~~~~~~i~~i 931 (1077)
++++.-.++-+. -.+++-++.+.||.||-+.+....+-..+....|| |+.||+ +..+.++.+.
T Consensus 2 i~l~IK~~~~~~-~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrL--Iy~GKi---LkD~~tL~~~ 64 (79)
T cd01790 2 VTLLIKSPNQKY-EDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRL--IYSGKL---LPDHLKLRDV 64 (79)
T ss_pred eEEEEECCCCCe-EEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEE--EEcCee---ccchhhHHHH
Confidence 445555554442 24566668899999999999887652122234555 577875 5667777665
No 131
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=38.27 E-value=34 Score=30.14 Aligned_cols=45 Identities=24% Similarity=0.335 Sum_probs=34.5
Q ss_pred ceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCcccc
Q 037461 979 PFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDIV 1030 (1077)
Q Consensus 979 PF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~~~ 1030 (1077)
.+.+.+.+.+|.+++|++|+++.|++..+. -++..+++ |+|+..+
T Consensus 10 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~q-----~Li~~Gk~--L~D~~tL 54 (74)
T cd01793 10 THTLEVTGQETVSDIKAHVAGLEGIDVEDQ-----VLLLAGVP--LEDDATL 54 (74)
T ss_pred EEEEEECCcCcHHHHHHHHHhhhCCCHHHE-----EEEECCeE--CCCCCCH
Confidence 467899999999999999999999988652 33444544 7776654
No 132
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=38.25 E-value=54 Score=27.67 Aligned_cols=55 Identities=18% Similarity=0.311 Sum_probs=41.6
Q ss_pred EEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCCCEEEE
Q 037461 671 LFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICF 734 (1077)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~GdIi~f 734 (1077)
+-++.+.++.+|...|.+..|+|++..-.+|.. ..++...++....+.+|+.|.+
T Consensus 12 ~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g---------~~l~d~~~l~~~~v~~~~~i~v 66 (69)
T cd01769 12 LEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAG---------KILKDDKTLSDYGIQDGSTLHL 66 (69)
T ss_pred EEECCCChHHHHHHHHHHHHCcChHHEEEEECC---------cCCCCcCCHHHCCCCCCCEEEE
Confidence 346778899999999999999998765444432 2345667888888999998765
No 133
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=37.89 E-value=47 Score=29.56 Aligned_cols=29 Identities=10% Similarity=0.397 Sum_probs=26.4
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPD 1005 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~ 1005 (1077)
|.-+.|.+.++-+|.+++.+|++++++..
T Consensus 10 ~~~~~~~~~~~~s~~dL~~~i~~~~~~~~ 38 (81)
T smart00666 10 GETRRLSVPRDISFEDLRSKVAKRFGLDN 38 (81)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHhCCCC
Confidence 56788999999999999999999999876
No 134
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=37.76 E-value=67 Score=29.02 Aligned_cols=57 Identities=11% Similarity=0.051 Sum_probs=38.8
Q ss_pred eEEEecccCCHHHHHHHHHHHcCCCCCCcEEEeeccccCCCCCCCcccccCccchHHhhhc
Q 037461 777 FCLEMSKLYTYDDVVERVAQQLGLDDPSKIRLTSHNCYSQQPKPQPIKYRGVDHLSDMLIH 837 (1077)
Q Consensus 777 f~~~ls~~~~Y~~~~~~v~~~l~~~~p~~lr~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 837 (1077)
|.|.++.-.+|.+|...||++|++ .|++++|.=-..- .+. .-+...+...+.+.+..
T Consensus 9 Vai~v~~g~~y~~L~~~ls~kL~l-~~~~~~LSY~~~~--~~~-~~v~l~~e~~me~aW~~ 65 (78)
T cd06411 9 VALRAPRGADVSSLRALLSQALPQ-QAQRGQLSYRAPG--EDG-HWVPISGEESLQRAWQD 65 (78)
T ss_pred EEEEccCCCCHHHHHHHHHHHhcC-ChhhcEEEecCCC--CCc-cEeecCcchHHHHHHHh
Confidence 677888999999999999999997 5888887542221 110 11222234678888754
No 135
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=36.51 E-value=44 Score=29.66 Aligned_cols=31 Identities=16% Similarity=0.401 Sum_probs=28.0
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCccc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEE 1007 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~ 1007 (1077)
|--|-+.+.++.|..++|++|+.+.|+|...
T Consensus 7 g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~ 37 (76)
T cd01800 7 GQMLNFTLQLSDPVSVLKVKIHEETGMPAGK 37 (76)
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCCCHHH
Confidence 7778899999999999999999999998843
No 136
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=36.23 E-value=1.9e+02 Score=26.87 Aligned_cols=64 Identities=20% Similarity=0.209 Sum_probs=42.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhhccccCCCCccEEEEEEec-cEEEEecCCccccccccc-ccceEEeee
Q 037461 876 SVHTIRLPKQSTVGDVINDLKTKVELSQPDAELRLLEVFY-HKIYKIFPLNEKIENIND-QYWTLRAEE 942 (1077)
Q Consensus 876 ~~~~~~v~k~~tv~dll~~l~~~~~~~~~~~~lRl~ev~~-~ki~~~~~~~~~i~~i~~-~~~~~~~E~ 942 (1077)
..+...-.|..||+.+..++++.+.+ ....|||.-.+ +.......++.++.+..- +...+-+|+
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i---~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~ 79 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI---QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEE 79 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT----TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC---CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEe
Confidence 45677889999999999999999999 33489999765 555556666667776321 123555554
No 137
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=35.55 E-value=87 Score=28.88 Aligned_cols=34 Identities=15% Similarity=0.349 Sum_probs=28.2
Q ss_pred CCCeEEEecccCCHHHHHHHHHHHcCCCCCCcEE
Q 037461 774 EDDFCLEMSKLYTYDDVVERVAQQLGLDDPSKIR 807 (1077)
Q Consensus 774 ~~~f~~~ls~~~~Y~~~~~~v~~~l~~~~p~~lr 807 (1077)
.+-..+.+...++|++|.++|-+++++..|-.|+
T Consensus 11 ~Dv~~i~v~~~i~f~dL~~kIrdkf~~~~~~~iK 44 (86)
T cd06408 11 DDTRYIMIGPDTGFADFEDKIRDKFGFKRRLKIK 44 (86)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCCCceEEE
Confidence 3468999999999999999999999986544444
No 138
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=34.86 E-value=1.6e+02 Score=27.21 Aligned_cols=70 Identities=17% Similarity=0.361 Sum_probs=43.2
Q ss_pred ceEEEEEecCC-CCCCCeEEEecccCCHHHHHHHHHHHcCCCCCCcEEEeeccccCCCCCCCcccccCccchHHhhhccC
Q 037461 761 RQVVHFRSLEK-PKEDDFCLEMSKLYTYDDVVERVAQQLGLDDPSKIRLTSHNCYSQQPKPQPIKYRGVDHLSDMLIHYN 839 (1077)
Q Consensus 761 r~~v~f~~~~~-~~~~~f~~~ls~~~~Y~~~~~~v~~~l~~~~p~~lr~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 839 (1077)
+|.|.|++... |.-..=...++..-+...+.+.+-++|++.+-+.|-+|-.+.+.-+|. .++.++...+.
T Consensus 1 KV~v~fk~iG~aPilk~~k~kI~~~~~f~~vi~fLrk~Lk~~~~~slFlYin~sFaPspD---------e~vg~L~~~f~ 71 (87)
T PF04110_consen 1 KVTVRFKAIGSAPILKQKKFKISASQTFATVIAFLRKKLKLKPSDSLFLYINNSFAPSPD---------ETVGDLYRCFG 71 (87)
T ss_dssp EEEEEEEEETT----S--EEEEETTSBTHHHHHHHHHHCT----SS-EEEEEEEE---TT---------SBHHHHHHHH-
T ss_pred CEEEEEEecCCCccccCcEEEECCCCchHHHHHHHHHHhCCccCCeEEEEEcCccCCCch---------hHHHHHHHHhC
Confidence 47899998753 323345677788888899999999999986556788888666654443 67777775544
No 139
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=33.47 E-value=93 Score=37.64 Aligned_cols=65 Identities=9% Similarity=0.235 Sum_probs=47.3
Q ss_pred EEEecCCCchhhHHHHHHhcCCCC--CCcEEEEEEeecCCcccccccccccccccccCCCCCEEEEEecCC
Q 037461 671 LFVKSTGKPMEYLPKLNEMAGYAP--DEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICFQKSTP 739 (1077)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~GdIi~fQ~~~~ 739 (1077)
+.++.+.++.|++|.|.+.+|=.. .+.=.-|.=-+ ++. .++++.+|+.++.+.|||+|..++...
T Consensus 16 laLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r--~gG--~pL~~~~sL~~~gV~DG~~L~L~p~~~ 82 (452)
T TIGR02958 16 VALPADVPVAELIPDLVDLLDDRGAAELGAVRWALAR--AGG--SPLDPDASLAEAGVRDGELLVLVPASA 82 (452)
T ss_pred eecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEec--CCC--CCCCCCCCHHHcCCCCCCeEEEeeCCC
Confidence 456788999999999999987421 12222344332 332 589999999999999999999997543
No 140
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=32.43 E-value=67 Score=28.41 Aligned_cols=55 Identities=16% Similarity=0.238 Sum_probs=37.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhhccccCCCCc-cEEEEEEeccEEEEecCCccccccc
Q 037461 876 SVHTIRLPKQSTVGDVINDLKTKVELSQPDA-ELRLLEVFYHKIYKIFPLNEKIENI 931 (1077)
Q Consensus 876 ~~~~~~v~k~~tv~dll~~l~~~~~~~~~~~-~lRl~ev~~~ki~~~~~~~~~i~~i 931 (1077)
+..++-++++.|++||++.+.+++++.+... -|.. ..........++.+.+|...
T Consensus 7 ~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~-~~~~~~~~~wL~~~k~l~~q 62 (80)
T PF09379_consen 7 TTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQY-QVDKDGEHHWLDLDKKLKKQ 62 (80)
T ss_dssp EEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE--EBTTSSEEEE-SSSBGGGS
T ss_pred CcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEE-eecCCCcceeccCcccHHHH
Confidence 3568999999999999999999999976331 2444 23334444666777776654
No 141
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=32.34 E-value=1e+02 Score=28.02 Aligned_cols=65 Identities=12% Similarity=0.046 Sum_probs=47.3
Q ss_pred EEEEecCCCchhhHHHHHHhcCCCCCCcEE-EEEEeecCCcccccccccccccccccCCCCCEEEEEec
Q 037461 670 RLFVKSTGKPMEYLPKLNEMAGYAPDEEID-LYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICFQKS 737 (1077)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-lyEEik~~p~~~ie~i~~~~tf~~~el~~GdIi~fQ~~ 737 (1077)
-.-++.+.+|++|...|..+.|.|++..-. +|-.- ...+++..+...++...-+.+|..|-....
T Consensus 16 ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~---~~~~~~l~~d~~~L~~y~~~dg~~IhVvD~ 81 (84)
T cd01789 16 EKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGD---DKLVSKLDDDDALLGSYPVDDGCRIHVIDV 81 (84)
T ss_pred eEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCC---CCeEeecCCCccEeeeccCCCCCEEEEEeC
Confidence 345778899999999999999998888744 55543 222323345567888888999998876543
No 142
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=31.67 E-value=1.1e+02 Score=39.46 Aligned_cols=96 Identities=22% Similarity=0.338 Sum_probs=69.6
Q ss_pred cchHHhhhccCCCcceeeEEEeccChhhhcccceEEEEEEcCCCCeEEEEEEEcCCCCCHHHHHHHHhhccccC--C-CC
Q 037461 829 DHLSDMLIHYNQTSDVLYYEVLDIPLPELQCLKTLKVAFHHATKDEVSVHTIRLPKQSTVGDVINDLKTKVELS--Q-PD 905 (1077)
Q Consensus 829 ~~l~~~l~~~~~~~~~l~YevL~i~l~elE~~k~~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~~~--~-~~ 905 (1077)
..|++++..-|...--|| -|+-|-.+||=.--+++||...+-+ +-.--++|.-+.|+.|+++.|..|+.=+ - +.
T Consensus 11 e~la~iiqqWNaNRLDLF--~lS~PtEdLefhGVMRFYFQDag~k-vaTKCiRVsStATt~dVidtL~EKFrPDmrMLS~ 87 (1629)
T KOG1892|consen 11 EKLADIIQQWNANRLDLF--ELSQPTEDLEFHGVMRFYFQDAGGK-VATKCIRVSSTATTQDVIDTLAEKFRPDMRMLSS 87 (1629)
T ss_pred HHHHHHHHHhccccccee--eccCCCccceeeeeEEEEeecccch-hhhheeEecccccHHHHHHHHHHHhCcchhhhcC
Confidence 568888876554222222 4788999999999999999997655 4444799999999999999999998522 1 34
Q ss_pred ccEEEEEEe-ccEEEEecCCcccc
Q 037461 906 AELRLLEVF-YHKIYKIFPLNEKI 928 (1077)
Q Consensus 906 ~~lRl~ev~-~~ki~~~~~~~~~i 928 (1077)
-+.-||||+ ||- -++..++.++
T Consensus 88 p~YsLyEVH~nGE-RrL~~dEKPL 110 (1629)
T KOG1892|consen 88 PKYSLYEVHVNGE-RRLDIDEKPL 110 (1629)
T ss_pred CCceeeeeecCcc-cccCcccCce
Confidence 578899997 455 5555555443
No 143
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=30.68 E-value=53 Score=28.79 Aligned_cols=53 Identities=11% Similarity=0.208 Sum_probs=41.7
Q ss_pred EEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCCCEE
Q 037461 671 LFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDII 732 (1077)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~GdIi 732 (1077)
+-|..+.+|.++...|.+..|+|++..-.+|.- .+++...++..+.+.+|.+|
T Consensus 13 l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G---------~~L~D~~~l~~~~i~~~~tv 65 (70)
T cd01794 13 LSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSG---------KLLTDKTRLQETKIQKDYVV 65 (70)
T ss_pred EEECCcChHHHHHHHHHHHhCCCHHHeEEEECC---------eECCCCCCHHHcCCCCCCEE
Confidence 456888999999999999999999877666642 34666778887888887765
No 144
>cd01781 AF6_RA_repeat2 Ubiquitin domain of AT-6, second repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=29.53 E-value=1.6e+02 Score=28.05 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=32.8
Q ss_pred EEEcCCCCCHHHHHHHHhhccccCCC-CccEEEEEEe
Q 037461 879 TIRLPKQSTVGDVINDLKTKVELSQP-DAELRLLEVF 914 (1077)
Q Consensus 879 ~~~v~k~~tv~dll~~l~~~~~~~~~-~~~lRl~ev~ 914 (1077)
+++|..+.|+.+++.++-.|+++..+ .....|.+|.
T Consensus 19 SIlvt~~~~a~~vV~eALeKygL~~e~p~~Y~LveV~ 55 (100)
T cd01781 19 TILLSINDNADRIVGEALEKYGLEKSDPDDYCLVEVS 55 (100)
T ss_pred EEEecCCccHHHHHHHHHHHhCCCccCccceEEEEEe
Confidence 89999999999999999999999876 4679999985
No 145
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=29.25 E-value=1.6e+02 Score=26.32 Aligned_cols=69 Identities=10% Similarity=0.024 Sum_probs=48.7
Q ss_pred EEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCCCE
Q 037461 652 LLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDI 731 (1077)
Q Consensus 652 ~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~GdI 731 (1077)
-|++|-..-.. ..+-++.+.+|++|...|.+..|+|++..-..|. + ..++.. ++..+-+.+|+.
T Consensus 3 ~I~Vk~~~G~~------~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~------G---k~L~d~-~L~~~gi~~~~~ 66 (78)
T cd01804 3 NLNIHSTTGTR------FDLSVPPDETVEGLKKRISQRLKVPKERLALLHR------E---TRLSSG-KLQDLGLGDGSK 66 (78)
T ss_pred EEEEEECCCCE------EEEEECCcCHHHHHHHHHHHHhCCChHHEEEEEC------C---cCCCCC-cHHHcCCCCCCE
Confidence 35555554322 3467788999999999999999999876644444 2 124445 788889999998
Q ss_pred EEEEe
Q 037461 732 ICFQK 736 (1077)
Q Consensus 732 i~fQ~ 736 (1077)
|..=.
T Consensus 67 i~l~~ 71 (78)
T cd01804 67 LTLVP 71 (78)
T ss_pred EEEEe
Confidence 87644
No 146
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=28.69 E-value=98 Score=29.28 Aligned_cols=62 Identities=11% Similarity=0.023 Sum_probs=50.9
Q ss_pred eeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCCCEEEEEec
Q 037461 668 VGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICFQKS 737 (1077)
Q Consensus 668 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~GdIi~fQ~~ 737 (1077)
--++.|+.+.+|.+|..+|...+|.||+.+-.+|. - . +..|...|+...-|..|.+|+-=..
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~d--G----~--~L~DDsrTLssyGv~sgSvl~Llid 77 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSID--G----K--ILSDDCATLGTLGVIPESVILLKAD 77 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeec--C----c--eeccCCccHHhcCCCCCCEEEEEec
Confidence 34567899999999999999999999988866666 2 1 4556778999999999999998764
No 147
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=27.94 E-value=49 Score=28.50 Aligned_cols=34 Identities=15% Similarity=0.292 Sum_probs=24.2
Q ss_pred CcccccccCeeece-eeEEe--ccCCCeEEEEEeeEE
Q 037461 363 NKYHAEQYGLQDAK-KGVLF--IDFPPVLQLQLKRFE 396 (1077)
Q Consensus 363 n~y~C~~c~~~~a~-k~~~i--~~lP~vLiI~LkRF~ 396 (1077)
+.+.|++||-.... +.+.. ..+.+++-||.++|.
T Consensus 3 ~~~kCpKCgn~~~~ekei~~tg~~lskifdvq~n~f~ 39 (68)
T COG3478 3 NAFKCPKCGNTNYEEKEIAATGGGLSKIFDVQNNKFI 39 (68)
T ss_pred ccccCCCcCCcchhhceeeccCCCcceeEEecccEEE
Confidence 45679999865443 33332 358899999999996
No 148
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=27.25 E-value=5e+02 Score=23.94 Aligned_cols=75 Identities=16% Similarity=0.355 Sum_probs=48.8
Q ss_pred ceEEEEEecCC-CCCCCeEEEecccCCHHHHHHHHHHHcCCCCCCc-EEEeeccccCCCCCCCcccccCccchHHhhhcc
Q 037461 761 RQVVHFRSLEK-PKEDDFCLEMSKLYTYDDVVERVAQQLGLDDPSK-IRLTSHNCYSQQPKPQPIKYRGVDHLSDMLIHY 838 (1077)
Q Consensus 761 r~~v~f~~~~~-~~~~~f~~~ls~~~~Y~~~~~~v~~~l~~~~p~~-lr~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 838 (1077)
+|.|.|++... |.-+.=..-++..++-.++...|-++|++. |.. |=+|..|.. .|. ...++.++...+
T Consensus 1 kv~i~~~~~g~~p~l~k~kflv~~~~tv~~~~~~lrk~L~l~-~~~slflyvnn~f--~p~-------~d~~~g~LY~~~ 70 (87)
T cd01612 1 KVTIRFKPIGSAPILKQKVFKISATQSFQAVIDFLRKRLKLK-ASDSLFLYINNSF--APS-------PDENVGNLYRCF 70 (87)
T ss_pred CeEEEEEECCCCccccccEEEeCCCCCHHHHHHHHHHHhCCC-ccCeEEEEECCcc--CCC-------chhHHHHHHHhc
Confidence 47889998753 333344555999999999999999999985 555 555552221 233 136777877665
Q ss_pred CCCcceee
Q 037461 839 NQTSDVLY 846 (1077)
Q Consensus 839 ~~~~~~l~ 846 (1077)
..-..||
T Consensus 71 -~~dGfLy 77 (87)
T cd01612 71 -GTNGELI 77 (87)
T ss_pred -CCCCEEE
Confidence 2334444
No 149
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=26.84 E-value=2.7e+02 Score=26.31 Aligned_cols=47 Identities=23% Similarity=0.338 Sum_probs=35.4
Q ss_pred EEEEcCCCCCHHHHHHHHhhccccCCCCccEEEEEEeccEEEEecCCcc
Q 037461 878 HTIRLPKQSTVGDVINDLKTKVELSQPDAELRLLEVFYHKIYKIFPLNE 926 (1077)
Q Consensus 878 ~~~~v~k~~tv~dll~~l~~~~~~~~~~~~lRl~ev~~~ki~~~~~~~~ 926 (1077)
.++..|-+.||+||+..|.+|.-++++ ++.+|+=- -|...+++.+.+
T Consensus 15 ~Tls~~l~tTv~eli~~L~rK~~l~~~-~ny~l~l~-~~~l~RvL~p~E 61 (97)
T cd01775 15 TTLSCPLNTTVSELIPQLAKKFYLPSG-GNYQLSLK-KHDLSRVLRPTE 61 (97)
T ss_pred EEEEcCCcCcHHHHHHHHHHhhcCCCC-CCeEEEEE-ECCeeeecCCcC
Confidence 478999999999999999999988775 45555533 344556776665
No 150
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=26.79 E-value=1.5e+02 Score=31.57 Aligned_cols=79 Identities=16% Similarity=0.118 Sum_probs=57.3
Q ss_pred EEEEEEcCCCCeEEEEEEEcCCCCCHHHHHHHHhhccccCCCCccEEEEEEeccEEEEecCCcccccccccccceEEeee
Q 037461 863 LKVAFHHATKDEVSVHTIRLPKQSTVGDVINDLKTKVELSQPDAELRLLEVFYHKIYKIFPLNEKIENINDQYWTLRAEE 942 (1077)
Q Consensus 863 ~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~~~~~~~~lRl~ev~~~ki~~~~~~~~~i~~i~~~~~~~~~E~ 942 (1077)
++|...++.+. . ..+..+|+..||++|.++|-...+-+.++.+|-|+.....+....=+++..+..+.. ..-||+=.
T Consensus 2 v~v~Iss~~~~-~-~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~-~Dg~rihv 78 (234)
T KOG3206|consen 2 VRVVISSSLND-F-RTEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKV-EDGLRIHV 78 (234)
T ss_pred eEEEEeccccc-c-hhhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCC-CCceEEEE
Confidence 45666555544 2 457789999999999999999999888888999999886666666666667766543 23455544
Q ss_pred cc
Q 037461 943 IP 944 (1077)
Q Consensus 943 iP 944 (1077)
|-
T Consensus 79 iD 80 (234)
T KOG3206|consen 79 ID 80 (234)
T ss_pred Ee
Confidence 43
No 151
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=26.52 E-value=78 Score=27.51 Aligned_cols=45 Identities=22% Similarity=0.396 Sum_probs=33.3
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCccc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDI 1029 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~~ 1029 (1077)
| ++.+.+.+..|.+++|+.|+++.|++..++ + ++..++ -|.|+..
T Consensus 10 g-~~~l~v~~~~TV~~lK~~I~~~~~i~~~~~---~--Li~~Gk--~L~d~~t 54 (71)
T cd01808 10 D-KEEIEIAEDASVKDFKEAVSKKFKANQEQL---V--LIFAGK--ILKDTDT 54 (71)
T ss_pred C-CEEEEECCCChHHHHHHHHHHHhCCCHHHE---E--EEECCe--EcCCCCc
Confidence 6 578999999999999999999999876443 3 343333 4666543
No 152
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=26.34 E-value=1.5e+02 Score=27.98 Aligned_cols=59 Identities=19% Similarity=0.191 Sum_probs=45.9
Q ss_pred EEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCCCEEEEEec
Q 037461 670 RLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICFQKS 737 (1077)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~GdIi~fQ~~ 737 (1077)
++-|..+.+++-|+..-+++.|++-++==-+|. + .+|+...|=...+..+||.||+=..
T Consensus 34 ~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFd------G---~rI~~~~TP~~L~mEd~D~Iev~~~ 92 (99)
T KOG1769|consen 34 VFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFD------G---QRIRETHTPADLEMEDGDEIEVVQE 92 (99)
T ss_pred EEEeecCChHHHHHHHHHHHcCCccceEEEEEC------C---cCcCCCCChhhhCCcCCcEEEEEee
Confidence 456889999999999999999999775444444 2 3566777777889999999997543
No 153
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=25.45 E-value=1.6e+02 Score=26.02 Aligned_cols=58 Identities=17% Similarity=0.246 Sum_probs=44.9
Q ss_pred EEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCCCEEEE
Q 037461 671 LFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICF 734 (1077)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~GdIi~f 734 (1077)
+-|..+.+|.++-..|.++.|+|++..=.+|.-.+ + ..++...++...-+.+|+-|..
T Consensus 14 v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~---G---k~l~D~~~L~~~~i~~g~~i~l 71 (74)
T cd01813 14 VTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVK---G---KPAEDDVKISALKLKPNTKIMM 71 (74)
T ss_pred EEECCCCCHHHHHHHHHHHHCCCHHHEEEEeeccc---C---CcCCCCcCHHHcCCCCCCEEEE
Confidence 34778999999999999999999999888883222 2 2355567888888889987753
No 154
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=24.72 E-value=1.7e+02 Score=26.58 Aligned_cols=28 Identities=14% Similarity=0.485 Sum_probs=24.2
Q ss_pred CCeEEEecccCCHHHHHHHHHHHcCCCC
Q 037461 775 DDFCLEMSKLYTYDDVVERVAQQLGLDD 802 (1077)
Q Consensus 775 ~~f~~~ls~~~~Y~~~~~~v~~~l~~~~ 802 (1077)
+-..+.|...++|.+|.+.|++++++++
T Consensus 10 d~~r~~l~~~~~~~~L~~~i~~r~~~~~ 37 (82)
T cd06407 10 EKIRFRLPPSWGFTELKQEIAKRFKLDD 37 (82)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCC
Confidence 3577888889999999999999999753
No 155
>TIGR03164 UHCUDC OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model.
Probab=24.59 E-value=70 Score=32.88 Aligned_cols=28 Identities=32% Similarity=0.643 Sum_probs=22.8
Q ss_pred cccCcceEEEeccCCcHHHHHHHHHHHhC
Q 037461 974 QNFGEPFFLVIHEGETLQEIKVRIQRKLQ 1002 (1077)
Q Consensus 974 ~~fGiPF~~~i~~~E~~~~~k~ri~~~~~ 1002 (1077)
.-||.||++.++ |-+-.++-.-+++|++
T Consensus 105 ~kFGfpFvi~v~-g~~~~~Il~~l~~Rl~ 132 (157)
T TIGR03164 105 ARFGFPFIMAVK-GKTKQSILAAFEARLN 132 (157)
T ss_pred HHCCCeeEEeeC-CCCHHHHHHHHHHHHC
Confidence 468999999998 4577888888888876
No 156
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=24.58 E-value=94 Score=27.24 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=25.3
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCC
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQV 1003 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~ 1003 (1077)
|--|.+.+.+..|..++|++|+++.|+
T Consensus 10 g~~~~l~v~~~~TV~~lK~~i~~~~~i 36 (77)
T cd01805 10 QQTFPIEVDPDDTVAELKEKIEEEKGC 36 (77)
T ss_pred CCEEEEEECCCCcHHHHHHHHHHhhCC
Confidence 667889999999999999999999998
No 157
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=23.92 E-value=74 Score=27.69 Aligned_cols=29 Identities=14% Similarity=0.306 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhccccCCCC
Q 037461 877 VHTIRLPKQSTVGDVINDLKTKVELSQPD 905 (1077)
Q Consensus 877 ~~~~~v~k~~tv~dll~~l~~~~~~~~~~ 905 (1077)
.+.+-+.++.++.|+|+++-++++++++.
T Consensus 8 r~~vkvtp~~~l~~VL~eac~k~~l~~~~ 36 (65)
T PF11470_consen 8 RFKVKVTPNTTLNQVLEEACKKFGLDPSS 36 (65)
T ss_dssp EEEE---TTSBHHHHHHHHHHHTT--GGG
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCccc
Confidence 45788999999999999999999998763
No 158
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=23.50 E-value=1.6e+02 Score=26.50 Aligned_cols=37 Identities=19% Similarity=0.201 Sum_probs=32.1
Q ss_pred eEEEEecCCCchhhHHHHHHhcCCC-CCCcEEEEEEee
Q 037461 669 GRLFVKSTGKPMEYLPKLNEMAGYA-PDEEIDLYEEIK 705 (1077)
Q Consensus 669 g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~lyEEik 705 (1077)
-++.|+++.+..++++.+.+..|+. ......|||.+.
T Consensus 15 kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~ 52 (87)
T cd01768 15 KTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLG 52 (87)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEEC
Confidence 4567899999999999999999999 666789999883
No 159
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=23.45 E-value=64 Score=30.84 Aligned_cols=27 Identities=30% Similarity=0.522 Sum_probs=0.0
Q ss_pred EEcCCCCCHHHHHHHHhhccccCCCCc
Q 037461 880 IRLPKQSTVGDVINDLKTKVELSQPDA 906 (1077)
Q Consensus 880 ~~v~k~~tv~dll~~l~~~~~~~~~~~ 906 (1077)
++||++.||++++..+++++.++++..
T Consensus 37 fLvp~~~tv~qf~~~ir~rl~l~~~~a 63 (104)
T PF02991_consen 37 FLVPKDLTVGQFVYIIRKRLQLSPEQA 63 (104)
T ss_dssp EEEETTSBHHHHHHHHHHHTT--TTS-
T ss_pred EEEcCCCchhhHHHHhhhhhcCCCCce
No 160
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=23.07 E-value=1.9e+02 Score=25.56 Aligned_cols=57 Identities=18% Similarity=0.389 Sum_probs=38.4
Q ss_pred CCeEEEecccCCHHHHHHHHHHHcCCCCCCcEEEeeccccCCCCCCCcccccCccchHHhhhc
Q 037461 775 DDFCLEMSKLYTYDDVVERVAQQLGLDDPSKIRLTSHNCYSQQPKPQPIKYRGVDHLSDMLIH 837 (1077)
Q Consensus 775 ~~f~~~ls~~~~Y~~~~~~v~~~l~~~~p~~lr~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 837 (1077)
+-+.+.++..++|++|..+|++++++. ...++|. |....+ -.+...+..-|..++..
T Consensus 11 ~~~~~~~~~~~s~~dL~~~i~~~~~~~-~~~~~l~----Y~Dedg-d~v~l~sd~Dl~~a~~~ 67 (81)
T smart00666 11 ETRRLSVPRDISFEDLRSKVAKRFGLD-NQSFTLK----YQDEDG-DLVSLTSDEDLEEAIEE 67 (81)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHhCCC-CCCeEEE----EECCCC-CEEEecCHHHHHHHHHH
Confidence 458888999999999999999999964 3455542 333333 23444445677777754
No 161
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=22.22 E-value=83 Score=32.69 Aligned_cols=28 Identities=25% Similarity=0.568 Sum_probs=22.4
Q ss_pred cccCcceEEEeccCCcHHHHHHHHHHHhC
Q 037461 974 QNFGEPFFLVIHEGETLQEIKVRIQRKLQ 1002 (1077)
Q Consensus 974 ~~fGiPF~~~i~~~E~~~~~k~ri~~~~~ 1002 (1077)
+-||.||++.++ |-+-.++-.-|++|++
T Consensus 110 ~kFGfpFii~v~-g~s~~~IL~~l~~Rl~ 137 (166)
T PRK13798 110 EKFGFVFLICAT-GRSADEMLAALQQRLH 137 (166)
T ss_pred HhCCCeEEEeeC-CCCHHHHHHHHHHHhc
Confidence 568999999998 4477777777777776
No 162
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=22.18 E-value=1.4e+02 Score=25.83 Aligned_cols=56 Identities=5% Similarity=0.172 Sum_probs=41.6
Q ss_pred EEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCCCEEEE
Q 037461 670 RLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICF 734 (1077)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~GdIi~f 734 (1077)
.+-+..+.+|.+|...|.+..|.|++..-.+|. + ..++...++..+.+++|+.|..
T Consensus 13 ~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~------G---k~L~d~~tL~~~~i~~~stl~l 68 (71)
T cd01808 13 EIEIAEDASVKDFKEAVSKKFKANQEQLVLIFA------G---KILKDTDTLTQHNIKDGLTVHL 68 (71)
T ss_pred EEEECCCChHHHHHHHHHHHhCCCHHHEEEEEC------C---eEcCCCCcHHHcCCCCCCEEEE
Confidence 467888999999999999999987655433332 2 2345567888889999988743
No 163
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=22.15 E-value=86 Score=30.77 Aligned_cols=45 Identities=16% Similarity=0.313 Sum_probs=31.7
Q ss_pred EEcCCCCCHHHHHHHHhhccccCCCCccEEEEEEeccEEEEecCCccccccc
Q 037461 880 IRLPKQSTVGDVINDLKTKVELSQPDAELRLLEVFYHKIYKIFPLNEKIENI 931 (1077)
Q Consensus 880 ~~v~k~~tv~dll~~l~~~~~~~~~~~~lRl~ev~~~ki~~~~~~~~~i~~i 931 (1077)
++||++.||+++...|+++++++++. +-|+ | ++ .+.+.+..+.+|
T Consensus 45 llVP~d~tV~qF~~iIRkrl~l~~~k--~flf-V-nn---~lp~~s~~mg~l 89 (121)
T PTZ00380 45 LALPRDATVAELEAAVRQALGTSAKK--VTLA-I-EG---STPAVTATVGDI 89 (121)
T ss_pred EEcCCCCcHHHHHHHHHHHcCCChhH--EEEE-E-CC---ccCCccchHHHH
Confidence 36999999999999999999998765 5333 2 22 244444455554
No 164
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=22.09 E-value=1.7e+02 Score=26.35 Aligned_cols=51 Identities=20% Similarity=0.144 Sum_probs=36.2
Q ss_pred EEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCC-CCCcEEEEEEe
Q 037461 654 FFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYA-PDEEIDLYEEI 704 (1077)
Q Consensus 654 f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~lyEEi 704 (1077)
++|.|......=.-.-++.|+...++.+++..+.+.+|++ ......|||..
T Consensus 4 ~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~ 55 (93)
T PF00788_consen 4 VLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVE 55 (93)
T ss_dssp EEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEE
T ss_pred EEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEE
Confidence 5666665544322445678899999999999999999993 33447777444
No 165
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=22.02 E-value=93 Score=27.89 Aligned_cols=47 Identities=17% Similarity=0.292 Sum_probs=32.1
Q ss_pred Ccc-eEE-EeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCcccc
Q 037461 977 GEP-FFL-VIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDIV 1030 (1077)
Q Consensus 977 GiP-F~~-~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~~~ 1030 (1077)
|-= |-+ .+.+..|.+++|++|+.+.|++-.. -|+ +..+ +-|+|+..+
T Consensus 10 G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~---QrL--i~~G--k~L~D~~tL 58 (78)
T cd01797 10 GKETRTVDSLSRLTKVEELREKIQELFNVEPEC---QRL--FYRG--KQMEDGHTL 58 (78)
T ss_pred CCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHH---eEE--EeCC--EECCCCCCH
Confidence 443 455 3788999999999999999997743 343 3333 346776543
No 166
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=21.44 E-value=2.5e+02 Score=25.00 Aligned_cols=78 Identities=10% Similarity=0.095 Sum_probs=53.1
Q ss_pred CcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCC
Q 037461 649 EDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLED 728 (1077)
Q Consensus 649 ~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~ 728 (1077)
+.+.|=+|+-|-. ++ .....++.++.+|...|...++-+......|+--. |...+...+ ..||..+.|..
T Consensus 5 ~~~~I~vRlpdG~--~l----~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~---Pr~~l~~~~-~~tl~e~~l~p 74 (82)
T PF00789_consen 5 DVVRIQVRLPDGS--RL----QRRFPKSDTLQDLYDFVESQLFSPEESDFELITAF---PRRELTDED-SKTLEEAGLLP 74 (82)
T ss_dssp SEEEEEEEETTST--EE----EEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESS---STEECCSTT-TSBTCCCTTSS
T ss_pred CEEEEEEECCCCC--EE----EEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCC---CCcCCCccc-cccHHHhcCCC
Confidence 3456666665533 22 12345889999999999988887765556665544 654445444 67999999989
Q ss_pred CCEEEEEe
Q 037461 729 GDIICFQK 736 (1077)
Q Consensus 729 GdIi~fQ~ 736 (1077)
+..|++++
T Consensus 75 ~~~l~v~~ 82 (82)
T PF00789_consen 75 SATLIVEK 82 (82)
T ss_dssp CEEEEEE-
T ss_pred CeEEEEEC
Confidence 98888864
No 167
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=21.22 E-value=99 Score=29.61 Aligned_cols=49 Identities=24% Similarity=0.310 Sum_probs=31.8
Q ss_pred EEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEec-----CCCcccCCcccc
Q 037461 981 FLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSL-----GRPEYLQDTDIV 1030 (1077)
Q Consensus 981 ~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~-----~~~~~~~~~~~~ 1030 (1077)
.+.|..==+-.++++|.=||||+++ ....|-|.++.. +.-..|.|.+++
T Consensus 14 ~VNV~~c~~a~eI~~rvLKKfg~~~-~~~~~~~~v~d~~~~~~~~~~~LsD~EL~ 67 (105)
T PF14847_consen 14 TVNVSGCFNAQEIKRRVLKKFGLPE-HPRNYCFYVLDGESPDPSNCRPLSDVELV 67 (105)
T ss_dssp EEE--S--HHHHHHHHHHHHHTSS---CCCEEEEEE-S-----SSEEEE-SSHHH
T ss_pred EEEECCCCCHHHHHHHHHHHcCCcc-ccccceEEEecccccccccceECcHHHHH
Confidence 4444444567899999999999999 999999999965 234666676653
No 168
>PF14353 CpXC: CpXC protein
Probab=21.00 E-value=61 Score=31.84 Aligned_cols=45 Identities=9% Similarity=0.116 Sum_probs=24.5
Q ss_pred EEeeeeeeecceeeeeeeeeeeecCCCCHHHHHhhccceEEecCCCcccccccCe
Q 037461 318 IECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYHAEQYGL 372 (1077)
Q Consensus 318 i~C~~C~~~s~~~E~f~~L~L~v~~~~sL~esL~~~~~~E~l~g~n~y~C~~c~~ 372 (1077)
+.|.+|++.... +.+. +++......+.+.|- ..+. +.+.|+.||.
T Consensus 2 itCP~C~~~~~~-~v~~--~I~~~~~p~l~e~il---~g~l----~~~~CP~Cg~ 46 (128)
T PF14353_consen 2 ITCPHCGHEFEF-EVWT--SINADEDPELKEKIL---DGSL----FSFTCPSCGH 46 (128)
T ss_pred cCCCCCCCeeEE-EEEe--EEcCcCCHHHHHHHH---cCCc----CEEECCCCCC
Confidence 689999875432 2222 333333334444443 2221 3489999985
Done!