Query 037461
Match_columns 1077
No_of_seqs 615 out of 2484
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 21:39:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037461.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037461hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ylm_A Ubiquitin carboxyl-term 100.0 2.6E-99 9E-104 904.9 47.1 476 560-1054 4-530 (530)
2 2f1z_A Ubiquitin carboxyl-term 100.0 4.9E-94 1.7E-98 868.1 39.4 494 49-562 25-522 (522)
3 1nb8_A Ubiquitin carboxyl-term 100.0 7E-69 2.4E-73 617.7 30.0 353 193-562 1-353 (353)
4 2y6e_A Ubiquitin carboxyl-term 100.0 3.8E-57 1.3E-61 522.7 27.9 299 193-525 3-360 (367)
5 3nhe_A Ubiquitin carboxyl-term 100.0 7.7E-57 2.6E-61 514.8 25.1 302 191-527 2-346 (348)
6 2gfo_A Ubiquitin carboxyl-term 100.0 1.2E-55 4.2E-60 515.1 27.0 298 193-524 57-396 (396)
7 3i3t_A Ubiquitin carboxyl-term 100.0 4.4E-56 1.5E-60 510.0 21.9 293 196-525 1-352 (355)
8 2ayn_A Ubiquitin carboxyl-term 100.0 3.6E-55 1.2E-59 512.4 21.8 302 195-525 11-395 (404)
9 1vjv_A Ubiquitin carboxyl-term 100.0 2.7E-54 9.3E-59 507.0 28.6 299 193-524 19-414 (415)
10 3mhs_A Ubiquitin carboxyl-term 100.0 3.6E-52 1.2E-56 497.5 26.0 299 193-524 136-474 (476)
11 3ihp_A Ubiquitin carboxyl-term 100.0 2.5E-49 8.6E-54 498.1 25.9 223 193-422 339-621 (854)
12 2foj_A Ubiquitin carboxyl-term 99.9 1.6E-24 5.3E-29 219.5 13.8 133 49-183 13-149 (155)
13 2vhf_A Ubiquitin carboxyl-term 99.9 1.4E-24 4.8E-29 242.1 10.0 216 198-473 9-308 (374)
14 3ivv_A Speckle-type POZ protei 99.9 2.1E-23 7.1E-28 208.9 11.1 129 51-184 7-145 (145)
15 4gjh_A TNF receptor-associated 99.8 3.7E-22 1.3E-26 206.7 6.1 133 51-183 20-174 (178)
16 4ghu_A TNF receptor-associated 99.8 1.5E-21 5.3E-26 205.0 4.7 134 51-186 36-191 (198)
17 1ca9_A TRAF2, protein (TNF rec 99.8 2.8E-21 9.5E-26 202.6 4.8 130 52-183 40-191 (192)
18 1lb6_A TNF receptor-associated 99.8 8.9E-21 3E-25 193.0 6.9 130 53-184 3-158 (160)
19 1d00_A Tumor necrosis factor r 99.8 1.3E-20 4.5E-25 193.2 6.3 129 52-182 16-166 (168)
20 2gkw_A TNF receptor-associated 99.8 2.3E-20 7.9E-25 195.5 4.1 129 53-183 38-188 (192)
21 3hqi_A Speckle-type POZ protei 99.8 3.3E-19 1.1E-23 200.9 10.7 126 54-184 6-141 (312)
22 1flk_A TNF receptor associated 99.8 1.3E-19 4.6E-24 194.7 5.2 130 52-183 73-224 (228)
23 2kvr_A Ubiquitin carboxyl-term 99.4 1.9E-14 6.6E-19 139.7 1.4 70 537-610 1-72 (130)
24 4gwm_A Meprin A subunit beta; 98.5 1.7E-07 5.9E-12 112.4 9.2 121 55-180 406-564 (592)
25 2ylm_A Ubiquitin carboxyl-term 97.4 0.013 4.3E-07 70.1 23.8 222 777-1016 38-288 (530)
26 3mp2_A Non-structural protein 96.2 0.044 1.5E-06 56.7 12.9 191 188-480 3-195 (211)
27 3u30_A Ubiquitin, linear DI-ub 94.9 0.24 8.2E-06 49.9 13.0 104 877-1007 32-136 (172)
28 3b08_A Polyubiquitin-C, ubiqui 94.7 0.33 1.1E-05 47.5 13.0 119 877-1029 12-131 (152)
29 2fe8_A PP1AB, ORF1AB, replicas 94.2 0.47 1.6E-05 52.2 13.9 83 189-291 93-175 (315)
30 3u30_A Ubiquitin, linear DI-ub 93.0 0.66 2.3E-05 46.6 11.7 126 646-810 16-141 (172)
31 3b08_A Polyubiquitin-C, ubiqui 92.8 0.82 2.8E-05 44.5 11.8 120 652-810 2-121 (152)
32 3rt3_B Ubiquitin-like protein 92.6 0.66 2.3E-05 45.9 11.0 121 877-1029 14-136 (159)
33 3rt3_B Ubiquitin-like protein 92.4 1.2 4.1E-05 44.0 12.5 122 651-810 3-126 (159)
34 2io1_B Small ubiquitin-related 89.5 0.79 2.7E-05 41.5 7.2 75 648-737 5-79 (94)
35 2io0_B Small ubiquitin-related 88.5 1.2 4.1E-05 40.0 7.6 74 649-737 4-77 (91)
36 2d07_B Ubiquitin-like protein 85.7 1.6 5.4E-05 39.3 6.7 73 648-735 15-87 (93)
37 1wz0_A Ubiquitin-like protein 84.9 2.2 7.6E-05 39.3 7.4 74 648-736 22-95 (104)
38 2k8h_A Small ubiquitin protein 84.5 1.9 6.5E-05 40.2 6.8 78 645-737 21-98 (110)
39 1wm3_A Ubiquitin-like protein 83.6 1.3 4.3E-05 37.8 4.9 56 670-734 15-70 (72)
40 2eke_C Ubiquitin-like protein 82.4 3.2 0.00011 38.3 7.4 75 646-736 27-101 (106)
41 3goe_A DNA repair protein RAD6 80.9 2.3 7.9E-05 36.8 5.3 55 671-734 24-79 (82)
42 1wyw_B Ubiquitin-like protein 80.8 2.4 8.1E-05 38.3 5.9 75 647-736 18-92 (97)
43 3a4r_A Nfatc2-interacting prot 80.6 1.5 5.2E-05 38.1 4.3 72 649-734 6-77 (79)
44 4efo_A Serine/threonine-protei 80.5 2.3 7.9E-05 38.4 5.5 40 955-1006 13-52 (94)
45 2uyz_B Small ubiquitin-related 80.1 2.3 8E-05 36.4 5.4 71 651-736 4-74 (79)
46 3plu_A Ubiquitin-like modifier 79.6 2.5 8.7E-05 38.0 5.5 70 649-733 20-89 (93)
47 2kjr_A CG11242; UBL, ubiquitin 79.1 11 0.00036 34.0 9.6 81 647-735 12-93 (95)
48 3kyd_D Small ubiquitin-related 79.1 4.4 0.00015 37.9 7.2 72 648-734 38-109 (115)
49 3v6c_B Ubiquitin; structural g 78.0 4.6 0.00016 35.8 6.8 74 647-735 14-87 (91)
50 3dbh_I NEDD8; cell cycle, acti 77.9 4.2 0.00015 35.4 6.5 73 648-735 10-82 (88)
51 2jxx_A Nfatc2-interacting prot 77.1 4.6 0.00016 36.7 6.5 70 652-734 25-95 (97)
52 2kj6_A Tubulin folding cofacto 74.7 17 0.00058 32.8 9.6 82 648-736 12-94 (97)
53 3tix_A Ubiquitin-like protein 74.5 5.2 0.00018 40.7 6.6 76 646-737 53-128 (207)
54 3n3k_B Ubiquitin; hydrolase, p 73.9 3.6 0.00012 35.6 4.9 73 650-737 3-75 (85)
55 4hcn_B Polyubiquitin, ubiquiti 73.2 3.5 0.00012 37.2 4.7 76 646-736 18-93 (98)
56 1wjn_A Tubulin-folding protein 72.1 8.7 0.0003 34.5 7.1 66 671-737 27-92 (97)
57 3mtn_B UBA80, ubcep1, ubiquiti 71.6 6.4 0.00022 33.9 5.9 73 650-737 3-75 (85)
58 1uh6_A Ubiquitin-like 5; beta- 71.4 8 0.00027 35.3 6.6 46 977-1029 38-83 (100)
59 2kvr_A Ubiquitin carboxyl-term 71.3 5.4 0.00019 38.2 5.7 34 777-811 58-91 (130)
60 2dzi_A Ubiquitin-like protein 70.8 9.3 0.00032 32.5 6.8 72 649-735 6-77 (81)
61 3phx_B Ubiquitin-like protein 70.0 7.7 0.00026 33.1 6.0 71 650-735 4-74 (79)
62 4a3p_A Ubiquitin carboxyl-term 70.0 9 0.00031 39.9 7.6 66 670-738 143-209 (217)
63 4a3p_A Ubiquitin carboxyl-term 69.6 10 0.00035 39.5 8.0 66 876-942 140-207 (217)
64 1qmy_A Protease, leader protea 68.1 1.5 5.1E-05 42.0 1.0 36 196-231 11-47 (167)
65 2bwf_A Ubiquitin-like protein 68.0 15 0.0005 30.9 7.4 70 651-736 5-74 (77)
66 3pge_A SUMO-modified prolifera 67.9 9.4 0.00032 39.3 7.0 76 646-737 25-101 (200)
67 3a9j_A Ubiquitin; protein comp 67.3 6.6 0.00023 32.9 5.0 70 653-737 3-72 (76)
68 1wx7_A Ubiquilin 3; ubiquitin- 66.9 14 0.0005 33.5 7.5 75 647-737 14-88 (106)
69 2l76_A Nfatc2-interacting prot 66.8 4.2 0.00014 36.6 3.6 72 648-735 19-91 (95)
70 1wh3_A 59 kDa 2'-5'-oligoadeny 66.6 8.6 0.00029 33.4 5.7 74 649-737 6-79 (87)
71 1ndd_A NEDD8, protein (ubiquit 66.6 6.6 0.00023 32.9 4.8 69 653-736 3-71 (76)
72 3jyu_A Ubiquitin carboxyl-term 66.6 11 0.00038 39.6 7.6 67 670-739 155-222 (231)
73 2kk8_A Uncharacterized protein 66.0 6.3 0.00022 34.5 4.6 30 977-1006 20-49 (84)
74 2hj8_A Interferon-induced 17 k 65.9 14 0.00046 32.5 6.9 73 650-737 4-76 (88)
75 4b6w_A Tubulin-specific chaper 65.6 7.6 0.00026 34.3 5.1 67 863-931 3-70 (86)
76 3jyu_A Ubiquitin carboxyl-term 65.4 16 0.00055 38.4 8.5 66 877-943 153-220 (231)
77 1wx8_A Riken cDNA 4931431F19; 64.6 13 0.00045 33.0 6.6 74 648-737 15-88 (96)
78 1uh6_A Ubiquitin-like 5; beta- 64.5 8.4 0.00029 35.1 5.2 70 649-733 27-96 (100)
79 4fbj_B NEDD8; effector-HOST ta 64.3 7.6 0.00026 34.1 4.9 71 652-737 2-72 (88)
80 1j8c_A Ubiquitin-like protein 63.3 19 0.00064 34.1 7.7 75 648-738 30-104 (125)
81 4b6w_A Tubulin-specific chaper 63.1 15 0.00051 32.3 6.5 61 671-734 19-80 (86)
82 1v5o_A 1700011N24RIK protein; 63.0 17 0.00058 32.9 7.1 76 651-739 8-86 (102)
83 2klc_A Ubiquilin-1; ubiquitin- 62.3 15 0.00052 33.2 6.7 73 649-737 24-96 (101)
84 3mtn_B UBA80, ubcep1, ubiquiti 61.3 9.6 0.00033 32.7 5.0 46 977-1029 13-58 (85)
85 1yqb_A Ubiquilin 3; structural 61.2 17 0.00059 32.8 6.8 74 648-737 20-93 (100)
86 3phx_B Ubiquitin-like protein 60.6 9.9 0.00034 32.4 4.8 46 977-1029 14-59 (79)
87 2ojr_A Ubiquitin; lanthide-bin 60.5 22 0.00074 32.7 7.5 74 648-736 33-106 (111)
88 2l7r_A Ubiquitin-like protein 60.4 8.6 0.00029 34.2 4.5 71 649-736 18-88 (93)
89 1ttn_A DC-UBP, dendritic cell- 60.0 16 0.00054 33.3 6.4 76 647-737 20-95 (106)
90 2c5l_C Phosphoinositide-specif 59.8 42 0.0014 31.4 9.1 71 860-931 5-92 (117)
91 2uyz_B Small ubiquitin-related 59.1 8.5 0.00029 32.8 4.1 45 977-1028 13-57 (79)
92 2kk8_A Uncharacterized protein 58.9 13 0.00046 32.4 5.4 72 649-735 9-81 (84)
93 1sif_A Ubiquitin; hydrophobic 58.8 11 0.00038 33.0 4.9 71 651-736 10-80 (88)
94 3a9j_A Ubiquitin; protein comp 58.7 9.1 0.00031 32.0 4.2 45 977-1028 10-54 (76)
95 3m62_B UV excision repair prot 58.6 8.7 0.0003 35.2 4.3 71 652-737 3-73 (106)
96 4dwf_A HLA-B-associated transc 58.6 14 0.00047 32.4 5.5 73 649-737 4-76 (90)
97 4eew_A Large proline-rich prot 58.5 19 0.00064 31.3 6.4 70 649-734 16-85 (88)
98 4a20_A Ubiquitin-like protein 57.7 23 0.00078 32.0 6.9 76 648-736 17-94 (98)
99 3n3k_B Ubiquitin; hydrolase, p 57.7 9.7 0.00033 32.7 4.3 46 977-1029 13-58 (85)
100 1v6e_A Cytoskeleton-associated 57.5 34 0.0012 30.3 8.1 79 650-736 7-86 (95)
101 3v6c_B Ubiquitin; structural g 57.2 12 0.00041 32.9 4.9 46 977-1029 27-72 (91)
102 3vdz_A Ubiquitin-40S ribosomal 56.8 20 0.00069 33.0 6.6 73 649-736 34-106 (111)
103 2faz_A Ubiquitin-like containi 56.6 30 0.001 29.1 7.2 72 651-736 3-75 (78)
104 3plu_A Ubiquitin-like modifier 56.4 18 0.00061 32.5 5.8 56 955-1028 20-75 (93)
105 2l7r_A Ubiquitin-like protein 56.2 10 0.00035 33.7 4.3 46 977-1029 27-72 (93)
106 1wy8_A NP95-like ring finger p 56.2 22 0.00075 30.9 6.5 75 649-737 6-81 (89)
107 2wyq_A HHR23A, UV excision rep 55.8 22 0.00075 30.5 6.3 73 650-737 5-80 (85)
108 3dbh_I NEDD8; cell cycle, acti 55.8 11 0.00038 32.6 4.4 46 977-1029 22-67 (88)
109 1ndd_A NEDD8, protein (ubiquit 55.8 11 0.00037 31.5 4.2 46 977-1029 10-55 (76)
110 2kj6_A Tubulin folding cofacto 55.4 24 0.00083 31.8 6.6 30 977-1006 26-55 (97)
111 1yx5_B Ubiquitin; proteasome, 55.0 14 0.00049 32.9 5.1 71 653-738 3-73 (98)
112 1v5o_A 1700011N24RIK protein; 54.7 28 0.00096 31.4 7.1 31 977-1007 21-51 (102)
113 1t0y_A Tubulin folding cofacto 53.7 41 0.0014 31.4 8.3 80 650-737 6-86 (122)
114 2dzi_A Ubiquitin-like protein 53.7 12 0.00041 31.8 4.2 46 977-1029 17-62 (81)
115 3k9o_B Ubiquitin, UBB+1; E2-25 53.5 15 0.00052 32.5 5.0 71 652-737 3-73 (96)
116 4fbj_B NEDD8; effector-HOST ta 53.2 12 0.00042 32.7 4.3 46 977-1029 10-55 (88)
117 2bwf_A Ubiquitin-like protein 51.5 14 0.00048 31.0 4.2 45 977-1028 13-57 (77)
118 4dwf_A HLA-B-associated transc 51.3 16 0.00055 31.9 4.7 47 977-1030 15-61 (90)
119 2kjr_A CG11242; UBL, ubiquitin 51.3 55 0.0019 29.3 8.3 66 862-930 15-81 (95)
120 1oey_A P67-PHOX, neutrophil cy 51.1 10 0.00034 33.4 3.1 56 776-837 15-70 (83)
121 2hj8_A Interferon-induced 17 k 50.9 13 0.00045 32.5 4.0 46 977-1029 14-59 (88)
122 4eew_A Large proline-rich prot 50.8 15 0.0005 32.1 4.3 46 977-1029 27-72 (88)
123 1sif_A Ubiquitin; hydrophobic 50.6 16 0.00055 32.0 4.6 30 977-1006 19-48 (88)
124 2kd0_A LRR repeats and ubiquit 50.0 17 0.0006 31.6 4.7 57 671-736 26-82 (85)
125 2kc2_A Talin-1, F1; FERM, adhe 49.2 33 0.0011 32.7 6.6 32 669-700 24-55 (128)
126 4hcn_B Polyubiquitin, ubiquiti 49.1 15 0.00052 32.9 4.3 46 977-1029 32-77 (98)
127 1wyw_B Ubiquitin-like protein 49.1 18 0.0006 32.4 4.7 45 977-1028 31-75 (97)
128 2kdi_A Ubiquitin, vacuolar pro 48.5 18 0.00061 33.5 4.8 73 651-738 10-82 (114)
129 1wh3_A 59 kDa 2'-5'-oligoadeny 48.2 15 0.00051 31.8 4.0 46 977-1029 17-62 (87)
130 2pjh_A Protein NPL4, nuclear p 47.9 9 0.00031 33.3 2.4 63 667-735 14-78 (80)
131 3k9o_B Ubiquitin, UBB+1; E2-25 47.4 17 0.00058 32.2 4.3 46 977-1029 11-56 (96)
132 2kzr_A Ubiquitin thioesterase 46.7 17 0.00058 31.7 4.1 62 673-738 17-78 (86)
133 1we7_A SF3A1 protein; structur 46.7 34 0.0012 31.6 6.4 78 942-1029 12-90 (115)
134 2kd0_A LRR repeats and ubiquit 46.5 17 0.00057 31.8 4.0 46 977-1029 21-66 (85)
135 1wxa_A Afadin, AF-6 protein; R 46.1 35 0.0012 31.9 6.3 36 879-914 27-63 (116)
136 1we6_A Splicing factor, putati 46.1 47 0.0016 30.3 7.3 76 649-737 26-103 (111)
137 3vdz_A Ubiquitin-40S ribosomal 46.1 22 0.00076 32.7 5.0 46 977-1029 45-90 (111)
138 1j8c_A Ubiquitin-like protein 45.8 32 0.0011 32.4 6.1 29 977-1005 41-69 (125)
139 3uf8_A Ubiquitin-like protein 44.6 38 0.0013 34.9 7.0 72 647-734 18-89 (209)
140 1wx8_A Riken cDNA 4931431F19; 44.5 20 0.00069 31.8 4.3 30 977-1006 26-55 (96)
141 1wgg_A Ubiquitin carboxyl-term 44.4 78 0.0027 28.1 8.2 74 649-738 6-79 (96)
142 2kan_A Uncharacterized protein 44.3 36 0.0012 30.2 5.9 73 649-737 14-87 (94)
143 1yx5_B Ubiquitin; proteasome, 44.3 20 0.00068 32.0 4.2 45 977-1028 10-54 (98)
144 1v86_A DNA segment, CHR 7, way 44.3 18 0.00062 32.3 3.9 30 977-1006 26-55 (95)
145 2klc_A Ubiquilin-1; ubiquitin- 44.1 22 0.00077 32.0 4.6 46 977-1029 34-79 (101)
146 4gdk_A Ubiquitin-like protein 43.7 1.3E+02 0.0045 26.7 9.4 76 760-846 4-81 (91)
147 1wf9_A NPL4 family protein; be 43.4 16 0.00053 33.5 3.4 79 651-737 8-94 (107)
148 2faz_A Ubiquitin-like containi 43.2 25 0.00084 29.7 4.5 30 977-1006 12-43 (78)
149 1wxv_A BAG-family molecular ch 43.0 86 0.003 27.3 8.3 74 649-738 6-85 (92)
150 1uel_A HHR23B, UV excision rep 42.7 63 0.0021 28.5 7.3 58 671-737 15-75 (95)
151 1wjn_A Tubulin-folding protein 42.6 52 0.0018 29.2 6.8 46 863-908 10-55 (97)
152 2kan_A Uncharacterized protein 41.6 26 0.00089 31.2 4.5 42 979-1027 26-67 (94)
153 2dzm_A FAS-associated factor 1 41.6 21 0.00073 32.4 4.0 30 977-1006 18-47 (100)
154 1wgg_A Ubiquitin carboxyl-term 41.3 21 0.00071 32.0 3.8 44 977-1027 16-60 (96)
155 3m63_B Ubiquitin domain-contai 41.2 15 0.00052 33.2 3.0 70 650-735 28-97 (101)
156 2kdi_A Ubiquitin, vacuolar pro 40.9 26 0.0009 32.4 4.6 30 977-1006 19-48 (114)
157 1v5t_A 8430435I17RIK protein; 40.8 16 0.00055 32.2 3.0 34 977-1013 16-50 (90)
158 1we6_A Splicing factor, putati 40.8 32 0.0011 31.5 5.1 30 977-1006 40-70 (111)
159 1wy8_A NP95-like ring finger p 40.5 25 0.00084 30.6 4.1 46 977-1029 17-64 (89)
160 1v6e_A Cytoskeleton-associated 40.4 53 0.0018 29.1 6.4 52 877-930 20-73 (95)
161 3q3f_A Ribonuclease/ubiquitin 39.8 30 0.001 35.2 5.1 72 651-737 106-177 (189)
162 1v5t_A 8430435I17RIK protein; 39.1 30 0.001 30.4 4.5 73 650-738 7-83 (90)
163 2dzj_A Synaptic glycoprotein S 37.4 49 0.0017 29.1 5.6 73 651-734 11-85 (88)
164 2ojr_A Ubiquitin; lanthide-bin 35.5 31 0.0011 31.6 4.2 45 977-1028 45-89 (111)
165 3m62_B UV excision repair prot 35.3 28 0.00097 31.7 3.8 46 977-1029 11-56 (106)
166 2fnj_B Transcription elongatio 35.3 32 0.0011 32.3 4.1 45 978-1029 12-56 (118)
167 3l0w_B Monoubiquitinated proli 34.8 42 0.0014 33.4 5.2 72 652-738 2-73 (169)
168 1t0y_A Tubulin folding cofacto 34.7 78 0.0027 29.5 6.9 52 877-930 19-72 (122)
169 1wju_A NEDD8 ultimate buster-1 34.4 41 0.0014 30.5 4.6 58 670-736 33-90 (100)
170 4dbg_A Ranbp-type and C3HC4-ty 34.1 82 0.0028 28.8 6.6 32 977-1008 36-67 (105)
171 1wju_A NEDD8 ultimate buster-1 33.6 34 0.0012 31.1 4.0 47 977-1030 29-75 (100)
172 3m63_B Ubiquitin domain-contai 33.1 18 0.00062 32.7 2.1 46 977-1029 37-82 (101)
173 1v86_A DNA segment, CHR 7, way 32.4 53 0.0018 29.2 5.0 48 861-918 18-65 (95)
174 1ttn_A DC-UBP, dendritic cell- 32.3 27 0.00094 31.7 3.2 46 977-1029 33-78 (106)
175 3q3f_A Ribonuclease/ubiquitin 32.1 40 0.0014 34.3 4.6 46 977-1029 115-160 (189)
176 4ajy_B Transcription elongatio 32.0 39 0.0013 31.6 4.1 31 977-1007 11-41 (118)
177 2wyq_A HHR23A, UV excision rep 31.9 44 0.0015 28.5 4.3 46 977-1029 15-63 (85)
178 3b1l_X E3 ubiquitin-protein li 36.8 11 0.00036 31.8 0.0 55 671-734 15-69 (76)
179 3b1l_X E3 ubiquitin-protein li 36.5 11 0.00037 31.8 0.0 30 977-1006 10-39 (76)
180 1oey_A P67-PHOX, neutrophil cy 29.8 51 0.0018 28.9 4.2 28 980-1007 16-43 (83)
181 2gow_A HCG-1 protein, ubiquiti 29.8 1.1E+02 0.0037 28.8 6.9 62 862-931 17-84 (125)
182 1wf9_A NPL4 family protein; be 29.8 39 0.0013 30.8 3.8 30 977-1007 17-47 (107)
183 1we7_A SF3A1 protein; structur 29.6 45 0.0015 30.7 4.2 58 671-737 50-107 (115)
184 1uel_A HHR23B, UV excision rep 28.8 46 0.0016 29.4 4.0 46 977-1029 10-58 (95)
185 1wgd_A Homocysteine-responsive 28.7 1E+02 0.0035 26.9 6.3 76 649-737 6-85 (93)
186 3v7o_A Minor nucleoprotein VP3 28.4 12 0.00042 38.6 0.0 57 670-735 34-90 (227)
187 1wxv_A BAG-family molecular ch 27.8 57 0.0019 28.5 4.4 45 977-1028 16-65 (92)
188 1yqb_A Ubiquilin 3; structural 27.8 58 0.002 29.2 4.5 45 977-1029 32-76 (100)
189 1ip9_A BEM1 protein; ubiquitin 27.6 72 0.0025 28.0 4.7 36 774-810 21-56 (85)
190 2lxa_A Ubiquitin-like protein 27.2 31 0.0011 30.4 2.5 47 977-1030 11-60 (87)
191 1wia_A Hypothetical ubiquitin- 27.2 1.1E+02 0.0038 26.7 6.3 60 858-932 5-65 (95)
192 3l0w_B Monoubiquitinated proli 27.0 46 0.0016 33.0 4.0 31 977-1007 10-40 (169)
193 1wx7_A Ubiquilin 3; ubiquitin- 26.4 52 0.0018 29.7 4.0 43 980-1029 29-71 (106)
194 1q1o_A Cell division control p 25.9 74 0.0025 28.8 4.7 27 774-800 22-48 (98)
195 2pjh_A Protein NPL4, nuclear p 25.8 40 0.0014 29.2 2.8 29 980-1008 16-44 (80)
196 1wgd_A Homocysteine-responsive 25.7 57 0.002 28.6 4.0 45 979-1030 21-67 (93)
197 1wm3_A Ubiquitin-like protein 25.2 63 0.0021 27.1 3.9 35 977-1014 11-45 (72)
198 2io1_B Small ubiquitin-related 25.1 90 0.0031 27.8 5.2 36 977-1015 17-52 (94)
199 4dbg_A Ranbp-type and C3HC4-ty 24.4 1.1E+02 0.0039 27.9 5.7 48 761-810 24-71 (105)
200 2bps_A YUKD protein; ubiquitin 24.2 1.1E+02 0.0036 26.7 5.2 59 671-734 21-80 (81)
201 2io0_B Small ubiquitin-related 24.2 93 0.0032 27.5 5.1 36 977-1015 15-50 (91)
202 2kdb_A Homocysteine-responsive 23.9 1E+02 0.0035 27.7 5.3 72 649-733 22-97 (99)
203 3u5e_m 60S ribosomal protein L 23.6 17 0.00058 34.4 0.0 58 671-737 15-72 (128)
204 2lxa_A Ubiquitin-like protein 23.4 2.5E+02 0.0084 24.5 7.6 61 862-932 3-64 (87)
205 1wgh_A Ubiquitin-like 3, HCG-1 23.4 2.9E+02 0.0099 25.5 8.5 61 863-931 17-83 (116)
206 1se9_A Ubiquitin family; ubiqu 23.1 2.5E+02 0.0084 26.5 8.0 48 879-931 31-83 (126)
207 3u5c_f 40S ribosomal protein S 21.5 20 0.00067 35.2 0.0 58 671-737 15-72 (152)
208 2daf_A FLJ35834 protein; hypot 21.1 78 0.0027 29.6 3.9 74 650-737 15-88 (118)
209 4gdk_A Ubiquitin-like protein 20.7 77 0.0026 28.2 3.7 32 671-702 24-55 (91)
210 1v2y_A 3300001G02RIK protein; 20.4 60 0.0021 29.7 3.1 76 645-734 2-92 (105)
No 1
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.6e-99 Score=904.91 Aligned_cols=476 Identities=28% Similarity=0.487 Sum_probs=420.9
Q ss_pred HHHhcccceeEEecchhHHhhcCCcceecccCCCC--CcEEEEecccccceee----------eccchhh----------
Q 037461 560 KAEAHLYTVIKVARDDDLLEQIGKDIYFDLVDHDK--VRSFRIQKQIPFNLFK----------VGQLREV---------- 617 (1077)
Q Consensus 560 ~~e~~~~~~~~~~~~~~~~~~~~~~~~fdl~~~~~--~~~~~~~~~~~~~~~~----------~~~~~~~---------- 617 (1077)
++|||||++++|+|+++|+.|+| |||+|++. +++|||+|+++|.+|+ .+++|-+
T Consensus 4 ~~EahlY~~vkv~tde~f~~~~G----fDL~d~~~~~~~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~ 79 (530)
T 2ylm_A 4 GSEAHLYMQVQIVAEDQFCGHQG----NDMYDEEKVKYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTK 79 (530)
T ss_dssp CTTGGGEEEEEEEEGGGGTTCCS----SSSCCTTTCCCEEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCE
T ss_pred hhhhhceeEEEEeeHHHHhhccC----CCCcCCccCCcceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCcc
Confidence 46999999999999999999999 99998873 4689999999999998 1111100
Q ss_pred --------------hc--cccCCceEEEEEeecCC---CCCCCCCCCCCCCcEEEEEeeeCCCCceEEeeeEEEEecCCC
Q 037461 618 --------------SN--KVHNAELKLFLEVERGP---DLRPIAPPEKTKEDILLFFKLYDPEKEELRYVGRLFVKSTGK 678 (1077)
Q Consensus 618 --------------~~--~~~~~~~~l~~e~~~~~---~~~~~~~~~~~~~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~ 678 (1077)
.. .....+++||||+.... +..+ .++....+++|||||||||.+|+|+||||++|+++++
T Consensus 80 Rp~~~~~~~~~~~~~~~~~~~~~~~~lflE~~~~~~~~~~~~-l~~~~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~k 158 (530)
T 2ylm_A 80 RPAMLDNEADGNKTMIELSDNENPWTIFLETVDPELAASGAT-LPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCK 158 (530)
T ss_dssp EECCCCHHHHTTSBHHHHHTSCSSEEEEEEECCHHHHTTTCC-CCCCCTTTEEEEEEEEEETTTTEEEEEEEEEEETTCB
T ss_pred CCccCCccccHHHHHHHHhccCCceEEEEEecccccCCcccc-CCCCCCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCC
Confidence 00 01235799999986421 1112 3556777889999999999999999999999999999
Q ss_pred chhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccc-cccccccc--cCCCCCEEEEEecCCCCCCCCCCCCCHHHHH
Q 037461 679 PMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIE-KRCTFRAS--QLEDGDIICFQKSTPIEGVGKFRYPEVPSFL 755 (1077)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~-~~~tf~~~--el~~GdIi~fQ~~~~~~~~~~~~~~~~~~yy 755 (1077)
|++|+|.|+++||||+||+|.||||++ |+ |||+|+ ++.||.++ ||++|||||||+.... ..+..|+||.+||
T Consensus 159 v~~l~~~i~~~~g~p~dt~l~lyEEi~--~~-~ie~l~~~~~t~~~~~~eL~~GdII~fQ~~~~~--~~~~~y~~v~~yy 233 (530)
T 2ylm_A 159 IRDLLPVMCDRAGFIQDTSLILYEEVK--PN-LTERIQDYDVSLDKALDELMDGDIIVFQKDDPE--NDNSELPTAKEYF 233 (530)
T ss_dssp GGGTHHHHHHHHTCCTTCCEEEEEEEE--TT-EEEECCCSSSBHHHHSTTCCTTEEEEEEECCGG--GGGSSSCSHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCceEEEEecC--CC-ceeEcccccccHHHHHhcccCCCEEEEEecCCc--cccccCCCHHHHH
Confidence 999999999999999999999999998 76 679999 89999999 9999999999998653 3456899999999
Q ss_pred HHHhcceEEEEEecCCCCCCCeEEEecccCCHHHHHHHHHHHcCCCCCCcEEEeeccccCCCCCCCcccccCccchHHhh
Q 037461 756 DYVHNRQVVHFRSLEKPKEDDFCLEMSKLYTYDDVVERVAQQLGLDDPSKIRLTSHNCYSQQPKPQPIKYRGVDHLSDML 835 (1077)
Q Consensus 756 ~~L~nr~~v~f~~~~~~~~~~f~~~ls~~~~Y~~~~~~v~~~l~~~~p~~lr~~~~~~~~~~~~~~~~~~~~~~~l~~~l 835 (1077)
+||+||+.|+|++...+.+++|++|||++|||+|||++||++||+ ||.+||||++++|++.|+. +++++.+++|+|||
T Consensus 234 ~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~~l~~-dP~~lRf~~~~~~~~~p~~-~i~~~~~~~L~d~l 311 (530)
T 2ylm_A 234 RDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQRLNT-DPMLLQFFKSQGYRDGPGN-PLRHNYEGTLRDLL 311 (530)
T ss_dssp HHHHHEEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHHHHTS-CGGGEEEECCCTTSCSCCS-BCCTTCCSCHHHHS
T ss_pred HHHhcceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHHHhCC-CchhEEEEecccccCCCCC-ccccCCCCcHHHHh
Confidence 999999999999987788889999999999999999999999998 6999999999999999985 88888889999999
Q ss_pred hccCC-CcceeeEEEeccChhhhcccceEEEEEEcCCCCeEEEEEEEcCCCCCHHHHHHHHhhccccCC-CCccEEEEEE
Q 037461 836 IHYNQ-TSDVLYYEVLDIPLPELQCLKTLKVAFHHATKDEVSVHTIRLPKQSTVGDVINDLKTKVELSQ-PDAELRLLEV 913 (1077)
Q Consensus 836 ~~~~~-~~~~l~YevL~i~l~elE~~k~~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~~~~-~~~~lRl~ev 913 (1077)
.+..+ +.++||||+|+|||+|||++|++||+|++++++++ +++++|||+|||+||+++|++++++++ ++++||||++
T Consensus 312 ~~~~~~~~~~l~YevL~ipl~ElE~~r~~kv~w~~~~~~~~-~~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev 390 (530)
T 2ylm_A 312 QFFKPRQPKKLYYQQLKMKITDFENRRSFKCIWLNSQFREE-EITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEI 390 (530)
T ss_dssp TTSCSSSCCEEEEEECSSCHHHHHSBCCEEEEEECTTSCEE-EEEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEE
T ss_pred hcccCCCCCeEEEEECCCCHHHHhhCceEEEEEECCCCceE-EEEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEE
Confidence 76433 45899999999999999999999999999998865 999999999999999999999999987 5789999999
Q ss_pred eccEEEEecCCcccccccccc-cceEEeeecchhhhcC-CCCCeEEEEEEeeccCccccccccccCcceEEEeccCCcHH
Q 037461 914 FYHKIYKIFPLNEKIENINDQ-YWTLRAEEIPEEEKNL-GPHDRLIHVYHFTKETAQNQMQIQNFGEPFFLVIHEGETLQ 991 (1077)
Q Consensus 914 ~~~ki~~~~~~~~~i~~i~~~-~~~~~~E~iP~~e~~~-~~~~~~i~v~hf~k~~~~~h~~~~~fGiPF~~~i~~~E~~~ 991 (1077)
++|||+++|+++++|.+|+++ ++.+|||+||+||.++ ++++++|+|+||+|++++.| |+||+|+|++||||+
T Consensus 391 ~~~ki~ki~~~~~~i~~i~d~~~~~~rieeip~ee~~~~~~~~~li~V~hf~k~~~~~~------G~PF~~~v~~gEt~~ 464 (530)
T 2ylm_A 391 VSYKIIGVHQEDELLECLSPATSRTFRIEEIPLDQVDIDKENEMLVTVAHFHKEVFGTF------GIPFLLRIHQGEHFR 464 (530)
T ss_dssp ETTEEEEEECTTSBGGGSCCCTTCEEEEEECCGGGSSCCTTTEEEEEEEEESSSTTCEE------EEEEEEEEETTCCHH
T ss_pred ECCEEEEecCCCcccccccccccceEEEEECCHHHhccCCCCcEEEEEEEeccCccccc------CCCeEEEecCCCcHH
Confidence 999999999999999999874 6799999999999999 99999999999999999666 999999999999999
Q ss_pred HHHHHHHHHhCCCcccccceEEEEEecCCCcccCCcccccccc--ccc-ccCCccceeeeeeCCCC
Q 037461 992 EIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDIVSSRF--QRR-DVYGAWEQYLGLEHSDS 1054 (1077)
Q Consensus 992 ~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~lgldh~~~ 1054 (1077)
+||+||++||||++|||+|||||||++++|.||+|++++++.. .+. ...|++++||||||+||
T Consensus 465 ~~k~Rl~~rlgv~~keF~K~Kfa~v~~~~~~yl~d~d~~~~l~~~~~~~~~~~~~~~~LgLdH~~k 530 (530)
T 2ylm_A 465 EVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDEYEVNLKDFEPQPGNMSHPRPWLGLDHFNK 530 (530)
T ss_dssp HHHHHHHHHHCCCHHHHTTCEEEEEETTEEEECCTTTCCCCGGGTSCSTTCSSSCCCEEEEECCC-
T ss_pred HHHHHHHHHhCCCHhhhhhEEEEEEECCcccccCCccceehhhhhhccccccCCccceecccCCCC
Confidence 9999999999999999999999999999999999988765443 211 12256778999999996
No 2
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=100.00 E-value=4.9e-94 Score=868.12 Aligned_cols=494 Identities=47% Similarity=0.800 Sum_probs=438.5
Q ss_pred CCCCCCcEEEEEEccccccCCCeeecCcEEECCeeEEEEEEeCCC----CCCceEEEEEecCCCCCCCCceEEEEEEEEE
Q 037461 49 LDDPPSSRFTWRIENFSRLNTKKHYSEIFIVGGFKWRVLIFPKGN----NVDHLSMYLDVADSSSLPYGWSRYAQFSLAV 124 (1077)
Q Consensus 49 ~~~~~~~~~tw~I~nfS~l~~~~~~Sp~F~vGG~~WrIll~P~Gn----~~~~lSiyL~~~~~~~~~~~W~~~a~f~l~L 124 (1077)
.+...+++|+|+|+|||.++ +.++|++|.+||++|+|++||+|+ +.++||+||+|.+. ..+.+|+++|+|+|.|
T Consensus 25 ~~~~~~~~~~w~I~nfS~~~-~~~~S~~F~vgg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~f~l~l 102 (522)
T 2f1z_A 25 TSWRSEATFQFTVERFSRLS-ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKI 102 (522)
T ss_dssp -CCCSEEEEEEEESSCTTCC-SCEECCCEEETTEEEEEEECBC--------CBBCEEEEESTT-CCCSSCBEEEEEEEEE
T ss_pred ccccCCcEEEEEECChhhcC-CceeCCCEEECCEeeEEEEEeCCCCCCCCCCeEEEEEEecCC-CCCCCceEEEEEEEEE
Confidence 34678999999999999996 499999999999999999999996 45899999999877 4467899999999999
Q ss_pred EeecCCcceeeecceeecCCCCCCCcccccccccccCCCCCCcccccceeeeEEEEEEeeccccccCCccccceeecccC
Q 037461 125 INQIHSKYSVRKDTQHQFNARESDWGFTSFMPLGELYDPNRGYLVNDTLIVEAEVIVRRVVDYWSYDSKKETGYVGLKNQ 204 (1077)
Q Consensus 125 ln~~~~~~~~~~~~~h~F~~~~~dwGf~~Fi~l~~L~~~~~gfl~nD~l~Ie~~V~V~~~~~~~~~dsk~~~g~vGL~N~ 204 (1077)
+|+.++..+..+...|+|.....+|||.+||++++|.++.+|||.||+++|+|+|+|.. +....|++++.+|++||.|+
T Consensus 103 ~n~~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~-p~g~~~~~~~~~g~~GL~Nl 181 (522)
T 2f1z_A 103 INYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADA-PHGVAWDSKKHTGYVGLKNQ 181 (522)
T ss_dssp CCTTCGGGCEEEECCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECC-CBSSCCCTTTTTSCCCBCCC
T ss_pred EcCCCCccceeccceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeeccc-cccccCCccccCCccceecC
Confidence 99998877777788899988888999999999999998899999999999999999944 56778999999999999999
Q ss_pred CcccchhhhhHHHhhhHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccchhhhhhccCCcccccccccHHH
Q 037461 205 GATCYMNSLLQTLFHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDSSVATKELTKSFGWDTYDSFMQHDVQE 284 (1077)
Q Consensus 205 GnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~l~~~Lq~Lf~~l~~s~~~v~~~~l~~s~~~~~~~~~~QqDa~E 284 (1077)
||||||||+||+|+++|+||++++.++. +......+++++|++||..|+.+..++.|..|+++|+|..+..++||||||
T Consensus 182 GnTCYmNSvLQ~L~~~~~fr~~~~~~~~-~~~~~~~~~~~~l~~lf~~l~~~~~~~~~~~l~~~~~~~~~~~~~QqDa~E 260 (522)
T 2f1z_A 182 GATCYMNSLLQTLFFTNQLRKAVYMMPT-EGDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFGWETLDSFMQHDVQE 260 (522)
T ss_dssp --CTTHHHHHHHHHTCHHHHHHHHTCCC-CSSCTTTCHHHHHHHHHHHHHHCSSCBCCTTHHHHTCCCTTTSSTTSCHHH
T ss_pred cccHHHHHHHHHHhccHHHHHHHhhccc-cCCcccchHHHHHHHHHHHHhcCCCccCcHHHHhhcCCccCCCcccccHHH
Confidence 9999999999999999999999998775 333455789999999999999998999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCccccccccccceEEeeEEEeeeeeeecceeeeeeeeeeeecCCCCHHHHHhhccceEEecCCCc
Q 037461 285 LNRVLSEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNK 364 (1077)
Q Consensus 285 fl~~Lld~Le~e~~~~~~~~~i~~lF~G~~~~~i~C~~C~~~s~~~E~f~~L~L~v~~~~sL~esL~~~~~~E~l~g~n~ 364 (1077)
|++.||+.|+++++++...+.|.++|+|++.+.+.|..|++.+.+.|+|++|+|+|++..+|.+||+.|+.+|.|+|+|+
T Consensus 261 fl~~LLd~L~~~l~~~~~~s~i~~lF~G~~~s~i~C~~C~~~s~~~e~f~~LsL~i~~~~~l~~~L~~~~~~E~l~~~n~ 340 (522)
T 2f1z_A 261 LCRVLLDNVENKMKGTCVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNK 340 (522)
T ss_dssp HHHHHHHHHHHHHTTSTTTTHHHHHHCEEEEEEECCSSSCCCCCEEEEESCEEECCTTCCBHHHHHHHHTCEEEECTTSC
T ss_pred HHHHHHHHHHhhccCCccccchhhheeEEEEEEEEcCCCCceeeeeeeeEEEEEEeCCcccchHHHHHhhceeecCCcce
Confidence 99999999999999888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCeeeceeeEEeccCCCeEEEEEeeEEEecccCeeeeccceEeeCcccccccccCCCCCCCcCcCCCccEEEEEE
Q 037461 365 YHAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRENGKYLSPDADRSVRNLYTLHSV 444 (1077)
Q Consensus 365 y~C~~c~~~~a~k~~~i~~lP~vLiI~LkRF~~d~~~~~~~Ki~~~v~FP~~LdL~~~~~~yl~~~~~~~~~~~Y~L~gV 444 (1077)
|.|++|++++|.|+..|.++|+||+|||+||.|+..++...|++++|+||..||| ++|+.... ...+..|+|+||
T Consensus 341 ~~C~~c~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fp~~Ldl----~~~~~~~~-~~~~~~Y~L~av 415 (522)
T 2f1z_A 341 YDAGEHGLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPL----DEFLQKTD-PKDPANYILHAV 415 (522)
T ss_dssp BCCGGGCSBCEEEEEEESCCCSEEEEEECCEEECSSSSCEEECCCCCBCCSEEEC----GGGBSSCC-TTSCCEEEEEEE
T ss_pred eecCcCCccceEEEEEeecCCceEEEEEEeEEEcccCCcceEcCcEEeCCCeecc----hhhhcccc-CCCCcEEEEEEE
Confidence 9999999999999999999999999999999999888888999999999999999 78876532 234678999999
Q ss_pred EEeeeccCCceEEEEEEeCCCCCEEEEeCceeeEecHHHHHHHhcCCCCCCCCCCCCCCCCCccccCCCcEEEEEEEecc
Q 037461 445 LVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDLKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRES 524 (1077)
Q Consensus 445 VvH~Gs~~~GHY~ayvr~~~~~~Wy~fnD~~Vt~vs~~evl~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~AYmLfY~R~~ 524 (1077)
|+|.|+.++|||+||+|+..+++||+|||+.|++++.++|++.+|||.+... ....+.+||||||+|.+
T Consensus 416 v~H~G~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~-----------~~~~~~~aYiLfY~r~~ 484 (522)
T 2f1z_A 416 LVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDL-----------SVRHCTNAYMLVYIRES 484 (522)
T ss_dssp EEEECSSSCSEEEEEECTTSSSCCEEEETTEEEECCHHHHSTTSSCCC-------------------CEEEEEEEEEETT
T ss_pred EEecccCCCceEEEEEecCCCCCEEEEECceeEECCHHHHHHhhcCCCcccc-----------ccCcCCceEEEEEEECC
Confidence 9999999999999999986689999999999999999999999999964210 01234689999999999
Q ss_pred CccccccCCChhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 037461 525 DKDKIICNVDEQDIAEHLRERLKKEQEEKEHKKKEKAE 562 (1077)
Q Consensus 525 ~~~~i~~~v~~~~ip~~l~~~~~~e~~~~e~~~~e~~e 562 (1077)
..++++.++.+.+||+++.+++++|+++.++++||++|
T Consensus 485 ~~~~~~~~~~~~~ip~~~~~~~~~e~~~~~~~~~~~~~ 522 (522)
T 2f1z_A 485 KLSEVLQAVTDHDIPQQLVERLQEEKRIEAQKRKERQE 522 (522)
T ss_dssp SHHHHTCCCCTTTSCSHHHHHHHHTTTCC---------
T ss_pred chHHhhcccCccCCCHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999876
No 3
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=100.00 E-value=7e-69 Score=617.74 Aligned_cols=353 Identities=56% Similarity=0.923 Sum_probs=310.4
Q ss_pred ccccceeecccCCcccchhhhhHHHhhhHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccchhhhhhccCC
Q 037461 193 KKETGYVGLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDSSVATKELTKSFGWD 272 (1077)
Q Consensus 193 k~~~g~vGL~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~l~~~Lq~Lf~~l~~s~~~v~~~~l~~s~~~~ 272 (1077)
|+.+|++||.|+||||||||+||+|+++|+||++++..+. .......+++++|++||..|+.+..+++|..|+++|+|.
T Consensus 1 k~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~-~~~~~~~~~~~~l~~lf~~l~~~~~~~~~~~l~~~~~~~ 79 (353)
T 1nb8_A 1 KKHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPT-EGDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFGWE 79 (353)
T ss_dssp CCCSSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCC-TTSCTTTCHHHHHHHHHHHHHHCSSCBCCHHHHHHHTCC
T ss_pred CCCCCCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCC-CCCcccccHHHHHHHHHHHHhhcCCCCCCHHHHhhcCCC
Confidence 5789999999999999999999999999999999988765 233445789999999999999998899999999999999
Q ss_pred cccccccccHHHHHHHHHHHHHHHhcCCccccccccccceEEeeEEEeeeeeeecceeeeeeeeeeeecCCCCHHHHHhh
Q 037461 273 TYDSFMQHDVQELNRVLSEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDK 352 (1077)
Q Consensus 273 ~~~~~~QqDa~Efl~~Lld~Le~e~~~~~~~~~i~~lF~G~~~~~i~C~~C~~~s~~~E~f~~L~L~v~~~~sL~esL~~ 352 (1077)
.+..+.|||||||++.||+.|+++++++...+.|.++|+|++.+.+.|..|++.+.+.|+|++|+|+|++..+|.+||+.
T Consensus 80 ~~~~~~QqDA~EFl~~LLd~L~~~~~~~~~~s~i~~~F~g~~~~~i~C~~C~~~s~~~e~f~~LsL~i~~~~~l~~~L~~ 159 (353)
T 1nb8_A 80 TLDSFMQHDVQELCRVLLDNVENKMKGTCVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKGKKNIFESFVD 159 (353)
T ss_dssp BTTTTTTSCHHHHHHHHHHHHHHHTTTSTTTTHHHHHHCEEEEEEEEESSSCCEEEEEEEESCEEECCTTCSBHHHHHHH
T ss_pred CCCcccchhHHHHHHHHHHHHHHHhcCCCccchhhhhceeEEEEEEEeccCCCeeceeeeeEEEEEEECCCcchHHHHHH
Confidence 99999999999999999999999999887888999999999999999999999999999999999999999999999999
Q ss_pred ccceEEecCCCcccccccCeeeceeeEEeccCCCeEEEEEeeEEEecccCeeeeccceEeeCcccccccccCCCCCCCcC
Q 037461 353 YVEVERLEGDNKYHAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRENGKYLSPDAD 432 (1077)
Q Consensus 353 ~~~~E~l~g~n~y~C~~c~~~~a~k~~~i~~lP~vLiI~LkRF~~d~~~~~~~Ki~~~v~FP~~LdL~~~~~~yl~~~~~ 432 (1077)
|+.+|.++|+|+|.|++|+++.|.|+..|.++|+||+|||+||.|+..++...|+++.|.||..||| ++|+....
T Consensus 160 ~~~~E~l~~~~~~~C~~c~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v~fp~~Ldl----~~~~~~~~- 234 (353)
T 1nb8_A 160 YVAVEQLDGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPL----DEFLQKTD- 234 (353)
T ss_dssp HTCCEEECTTTCEECGGGCEECEEEEEEESCCCSEEEEEECCCC--------CCCCCCCBCCSEEEC----GGGBSSCC-
T ss_pred hhCccccCCCccccCCcCccEeeEEEEEhhcCCCceEEEEecEEEecccCceEecCcEEECCCeeeh----hhhhcccC-
Confidence 9999999999999999999999999999999999999999999999877778999999999999999 77876532
Q ss_pred cCCCccEEEEEEEEeeeccCCceEEEEEEeCCCCCEEEEeCceeeEecHHHHHHHhcCCCCCCCCCCCCCCCCCccccCC
Q 037461 433 RSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDLKRALEEQYGGEEELPQTNPGFNNTPFKFTKY 512 (1077)
Q Consensus 433 ~~~~~~Y~L~gVVvH~Gs~~~GHY~ayvr~~~~~~Wy~fnD~~Vt~vs~~evl~~~~Gg~~~~~~~~~~~~~~~~~~~~~ 512 (1077)
...+..|+|+|||+|.|+.++|||+||+|+..+++||+|||+.|+++++++|++.+|||.+... ....+
T Consensus 235 ~~~~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~gg~~~~~-----------~~~~~ 303 (353)
T 1nb8_A 235 PKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDL-----------SVRHC 303 (353)
T ss_dssp TTSCCEEEEEEEEEEESSTTCCCEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCC------------------CC
T ss_pred CCCCceEEEEEEEEEeCCCCCcEEEEEEecCCCCCEEEEECcceEECCHHHHHHHhcCCCcccc-----------ccCcC
Confidence 2346789999999999999999999999976689999999999999999999999999965310 01124
Q ss_pred CcEEEEEEEeccCccccccCCChhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 037461 513 SNAYMLVYIRESDKDKIICNVDEQDIAEHLRERLKKEQEEKEHKKKEKAE 562 (1077)
Q Consensus 513 ~~AYmLfY~R~~~~~~i~~~v~~~~ip~~l~~~~~~e~~~~e~~~~e~~e 562 (1077)
.+||||||+|.+..++++.++.+.+||+++.+++++|++..++++||++|
T Consensus 304 ~~aYiLfY~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 353 (353)
T 1nb8_A 304 TNAYMLVYIRESKLSEVLQAVTDHDIPQQLVERLQEEKRIEAQKRKERQE 353 (353)
T ss_dssp EEEEEEEEEETTTHHHHTCCCCGGGSCHHHHHHHHHHHHHHHCC------
T ss_pred CeEEEEEEEECchhhhhhcccCccccCHHHHHHHHHHHHHHHHHHHhhcC
Confidence 68999999999999999999999999999999999999999999988876
No 4
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=100.00 E-value=3.8e-57 Score=522.74 Aligned_cols=299 Identities=25% Similarity=0.383 Sum_probs=259.4
Q ss_pred ccccceeecccCCcccchhhhhHHHhhhHHHHHHhccCCCCC------CCCCCCCHHHHHHHHHHHHhcCC-Ccccchhh
Q 037461 193 KKETGYVGLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTTE------NDMPSGSIPLALQSLFYKLQYSD-SSVATKEL 265 (1077)
Q Consensus 193 k~~~g~vGL~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~------~~~~~~~l~~~Lq~Lf~~l~~s~-~~v~~~~l 265 (1077)
+..+|++||.|+||||||||+||+|+++|+||++++...... ......++..+|+.||..|+.+. .+++|..|
T Consensus 3 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~ 82 (367)
T 2y6e_A 3 HIQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMF 82 (367)
T ss_dssp -CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHH
T ss_pred CCCCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCCCCcCHHHH
Confidence 356899999999999999999999999999999998653211 11123468999999999999864 67999999
Q ss_pred hhhccC--CcccccccccHHHHHHHHHHHHHHHhcCCc-----------------------------cccccccccceEE
Q 037461 266 TKSFGW--DTYDSFMQHDVQELNRVLSEKLEDKMKGTV-----------------------------VEGTIQQLFEGHH 314 (1077)
Q Consensus 266 ~~s~~~--~~~~~~~QqDa~Efl~~Lld~Le~e~~~~~-----------------------------~~~~i~~lF~G~~ 314 (1077)
..++++ +.|..+.|||||||++.|||.|+++++... ..+.|.++|+|++
T Consensus 83 ~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G~l 162 (367)
T 2y6e_A 83 KTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLF 162 (367)
T ss_dssp HHHHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCEEE
T ss_pred HHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHHHHhcCCccccccCcEE
Confidence 999874 568889999999999999999999985421 2356889999999
Q ss_pred eeEEEeeeeeeecceeeeeeeeeeeecCC-------------------CCHHHHHhhccceEEecCCCcccccccC-eee
Q 037461 315 MNYIECINVDYKSTRKESFYDLQLDVKGC-------------------RDVYASFDKYVEVERLEGDNKYHAEQYG-LQD 374 (1077)
Q Consensus 315 ~~~i~C~~C~~~s~~~E~f~~L~L~v~~~-------------------~sL~esL~~~~~~E~l~g~n~y~C~~c~-~~~ 374 (1077)
.+.++|..|++.+.+.|+|++|+|+|+.. .+|++||+.|+.+|.++|+|+|.|++|+ +++
T Consensus 163 ~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~~~~~ 242 (367)
T 2y6e_A 163 KSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQ 242 (367)
T ss_dssp EEEEECTTTCCEEEEEEEESSEEEECCC-------------------CEEHHHHHHHHTSCEECCC-CCEEETTTTEEEC
T ss_pred eeeEEeCCCCCEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHHHHHHhcccccCCCCCCccCCCCCCCce
Confidence 99999999999999999999999999743 4799999999999999999999999998 678
Q ss_pred ceeeEEeccCCCeEEEEEeeEEEecccCeeeeccceEeeCc-ccccccccCCCCCCCcCcCCCccEEEEEEEEeeeccCC
Q 037461 375 AKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPL-QLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGGVHG 453 (1077)
Q Consensus 375 a~k~~~i~~lP~vLiI~LkRF~~d~~~~~~~Ki~~~v~FP~-~LdL~~~~~~yl~~~~~~~~~~~Y~L~gVVvH~Gs~~~ 453 (1077)
|.|+..|.++|+||+|||+||.|+. ....|+++.|.||. .||| ++|+.... .....|+|+|||+|.|+.++
T Consensus 243 a~K~~~i~~lP~vL~i~LkRF~~~~--~~~~K~~~~v~fp~~~Ldl----~~~~~~~~--~~~~~Y~L~avv~H~G~~~~ 314 (367)
T 2y6e_A 243 ATKKFDLWSLPKILVVHLKRFSYNR--YWRDKLDTVVEFPIRGLNM----SEFVCNLS--ARPYVYDLIAVSNHYGAMGV 314 (367)
T ss_dssp CEEEEEEEECCSEEEEEEECEEECS--SCEEECCCCEECCSSCEEC----GGGBSCSS--SCCCEEEEEEEEEEECSSSS
T ss_pred EEEEEEEecCCcEEEEEEeCeeecC--ccceecCceEEecCCcCCh----hhhccCCC--CCCceEEEEEEeecCCCCCC
Confidence 9999999999999999999999974 35689999999997 6999 78876543 24578999999999999999
Q ss_pred ceEEEEEEeCCCCCEEEEeCceeeEecHHHHHHHhcCCCCCCCCCCCCCCCCCccccCCCcEEEEEEEeccC
Q 037461 454 GHYYAFIRPTLSDQWYKFDDERVTKEDLKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRESD 525 (1077)
Q Consensus 454 GHY~ayvr~~~~~~Wy~fnD~~Vt~vs~~evl~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~AYmLfY~R~~~ 525 (1077)
|||+||+|...+++||+|||+.|++++.++|+ +.+||||||+|.+.
T Consensus 315 GHY~a~~~~~~~~~W~~fnD~~V~~v~~~~v~--------------------------~~~aYiLfY~r~~~ 360 (367)
T 2y6e_A 315 GHYTAYAKNKLNGKWYYFDDSNVSLASEDQIV--------------------------TKAAYVLFYQRRDD 360 (367)
T ss_dssp CEEEEEEECTTTCCEEEEETTEEEECCGGGTS--------------------------STTEEEEEEEECCC
T ss_pred CeeeEEEEcCCCCeEEEECCCCceECCHHHcC--------------------------CCCcEEEEEEEcCC
Confidence 99999999977899999999999999998884 24899999999874
No 5
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=100.00 E-value=7.7e-57 Score=514.84 Aligned_cols=302 Identities=27% Similarity=0.429 Sum_probs=259.4
Q ss_pred CCccccceeecccCCcccchhhhhHHHhhhHHHHHHhccCCCC----CCCCCCCCHHHHHHHHHHHHhc--CCCcccchh
Q 037461 191 DSKKETGYVGLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTT----ENDMPSGSIPLALQSLFYKLQY--SDSSVATKE 264 (1077)
Q Consensus 191 dsk~~~g~vGL~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~~~~----~~~~~~~~l~~~Lq~Lf~~l~~--s~~~v~~~~ 264 (1077)
++++.+|++||.|+||||||||+||+|+++|+||+++++.... .......++.++|+.||..|+. ....++|..
T Consensus 2 ~sk~~~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~p~~ 81 (348)
T 3nhe_A 2 NSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSE 81 (348)
T ss_dssp ----CCSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSSCCTTHHHHHHHHHHHHHHTTCCTTCEECCHH
T ss_pred CCCCCCCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhccCCCcccHHHHHHHHHHHHHHcCCCCCccCHHH
Confidence 5788999999999999999999999999999999999864221 1122346789999999999984 456899999
Q ss_pred hhhhcc--CCcccccccccHHHHHHHHHHHHHHHhcCCc-----------------------------cccccccccceE
Q 037461 265 LTKSFG--WDTYDSFMQHDVQELNRVLSEKLEDKMKGTV-----------------------------VEGTIQQLFEGH 313 (1077)
Q Consensus 265 l~~s~~--~~~~~~~~QqDa~Efl~~Lld~Le~e~~~~~-----------------------------~~~~i~~lF~G~ 313 (1077)
|...++ .+.+..+.||||+||++.||+.|+++++... ..+.|.++|+|+
T Consensus 82 ~~~~l~~~~~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~ 161 (348)
T 3nhe_A 82 FKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQ 161 (348)
T ss_dssp HHHHHHHHSGGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHHTTCCCHHHHHHCEE
T ss_pred HHHHHHHhhhhhCCCCccCHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHhhcCCccccccceE
Confidence 999886 3578888999999999999999999986432 134588999999
Q ss_pred EeeEEEeeeeeeecceeeeeeeeeeeecCCC----CHHHHHhhccceEEecCCCcccccccC-eeeceeeEEeccCCCeE
Q 037461 314 HMNYIECINVDYKSTRKESFYDLQLDVKGCR----DVYASFDKYVEVERLEGDNKYHAEQYG-LQDAKKGVLFIDFPPVL 388 (1077)
Q Consensus 314 ~~~~i~C~~C~~~s~~~E~f~~L~L~v~~~~----sL~esL~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vL 388 (1077)
+.+.+.|..|++.+.+.|+|++|+|+|+... +|++||+.|+.+|.++|+|+|.|+.|+ ++.|.|+..|.++|++|
T Consensus 162 ~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vL 241 (348)
T 3nhe_A 162 LKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKIL 241 (348)
T ss_dssp EEEEEEETTTCCEEEEEEEESSEEECCCSSCSSCEEHHHHHHHHHSCEEECGGGCCEETTTTEECCEEEEEEEEECCSEE
T ss_pred EEEEEEcCCCCCEeeeeccceEEeeeCCCcccCCCCHHHHHHHhcCceEecCCCceECCCCCCcccEEEEEEeecCCceE
Confidence 9999999999999999999999999998743 899999999999999999999999997 67899999999999999
Q ss_pred EEEEeeEEEecccCeeeeccceEeeC-cccccccccCCCCCCCcCcCCCccEEEEEEEEeeeccCCceEEEEEEeCCCCC
Q 037461 389 QLQLKRFEYDFMRDTMVKINDRYEFP-LQLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQ 467 (1077)
Q Consensus 389 iI~LkRF~~d~~~~~~~Ki~~~v~FP-~~LdL~~~~~~yl~~~~~~~~~~~Y~L~gVVvH~Gs~~~GHY~ayvr~~~~~~ 467 (1077)
+|||+||.++ +....|+++.|+|| ..||| ++|+..+. ....|+|+|||+|.|+.++|||+||+|...+++
T Consensus 242 ~i~lkRf~~~--~~~~~K~~~~v~fp~~~ldl----~~~~~~~~---~~~~Y~L~avv~H~G~~~~GHY~~~~~~~~~~~ 312 (348)
T 3nhe_A 242 VLHLKRFSES--RIRTSKLTTFVNFPLRDLDL----REFASENT---NHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGE 312 (348)
T ss_dssp EEEECCBCCC--SSCCCBCCCCEECCSSCEEC----GGGBCTTC---CCCEEEEEEEEEEEECSSCEEEEEEEECTTTCC
T ss_pred EEEEEccccc--CCceeecCcceeccCCcCCH----hhhcCCCC---CCCcEEEEEEEEccCCCCCcccEEEEccCCCCc
Confidence 9999999875 45678999999999 47999 78876543 356899999999999999999999999977899
Q ss_pred EEEEeCceeeEecHHHHHHHhcCCCCCCCCCCCCCCCCCccccCCCcEEEEEEEeccCcc
Q 037461 468 WYKFDDERVTKEDLKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRESDKD 527 (1077)
Q Consensus 468 Wy~fnD~~Vt~vs~~evl~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~AYmLfY~R~~~~~ 527 (1077)
||+|||+.|++++.++|. ..+||||||+|.+...
T Consensus 313 W~~~nD~~V~~v~~~~v~--------------------------~~~aY~LfY~r~~~~~ 346 (348)
T 3nhe_A 313 WHTFNDSSVTPMSSSQVR--------------------------TSDAYLLFYELASPPS 346 (348)
T ss_dssp EEEEETTEEEEECGGGTC--------------------------CTTEEEEEEEECC---
T ss_pred EEEEeCCCceECCHHHcC--------------------------CCCceEEEEEecCCCC
Confidence 999999999999998883 2489999999987543
No 6
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=100.00 E-value=1.2e-55 Score=515.13 Aligned_cols=298 Identities=28% Similarity=0.469 Sum_probs=258.6
Q ss_pred ccccceeecccCCcccchhhhhHHHhhhHHHHHHhccCCCC------CCCCCCCCHHHHHHHHHHHHhcCC-Ccccchhh
Q 037461 193 KKETGYVGLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTT------ENDMPSGSIPLALQSLFYKLQYSD-SSVATKEL 265 (1077)
Q Consensus 193 k~~~g~vGL~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~~~~------~~~~~~~~l~~~Lq~Lf~~l~~s~-~~v~~~~l 265 (1077)
...+|++||.|+||||||||+||+|+++|+||++++..... .......+++.+++.|+..|+.+. ..++|..|
T Consensus 57 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~i~P~~f 136 (396)
T 2gfo_A 57 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDF 136 (396)
T ss_dssp CSSTTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSCEEEECCHHH
T ss_pred CCCCCcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHHHHHHHHHHHHHcCCCceECHHHH
Confidence 34689999999999999999999999999999999763210 111123468889999999999864 57899999
Q ss_pred hhhccC--CcccccccccHHHHHHHHHHHHHHHhcCCc-----------------------------cccccccccceEE
Q 037461 266 TKSFGW--DTYDSFMQHDVQELNRVLSEKLEDKMKGTV-----------------------------VEGTIQQLFEGHH 314 (1077)
Q Consensus 266 ~~s~~~--~~~~~~~QqDa~Efl~~Lld~Le~e~~~~~-----------------------------~~~~i~~lF~G~~ 314 (1077)
...+++ +.|..+.||||+||++.|||.|+++++... ..+.|.++|+|++
T Consensus 137 ~~~l~~~~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~l 216 (396)
T 2gfo_A 137 KITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQF 216 (396)
T ss_dssp HHHHHHHCGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHHHHHHCCSHHHHHHCEEE
T ss_pred HHHHHHhchhhcCCCCCChHHHHHHHHHHHHHHHhhhccccccccccccccchhhHHHHHHHHhhhccCCccchhhCcEE
Confidence 988874 578899999999999999999999986532 2456889999999
Q ss_pred eeEEEeeeeeeecceeeeeeeeeeeecCC--CCHHHHHhhccceEEecCCCcccccccC-eeeceeeEEeccCCCeEEEE
Q 037461 315 MNYIECINVDYKSTRKESFYDLQLDVKGC--RDVYASFDKYVEVERLEGDNKYHAEQYG-LQDAKKGVLFIDFPPVLQLQ 391 (1077)
Q Consensus 315 ~~~i~C~~C~~~s~~~E~f~~L~L~v~~~--~sL~esL~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vLiI~ 391 (1077)
++.++|..|++.+.+.|+|++|+|+|+.. .+|++||+.|+.+|.++|+|+|.|+.|+ +++|.|+..|.++|+||+||
T Consensus 217 ~s~i~C~~C~~~s~~~e~f~~LsL~ip~~~~~sL~~~L~~f~~~E~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vLiih 296 (396)
T 2gfo_A 217 KSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVH 296 (396)
T ss_dssp EEEEEETTTCCEEEEEEEESSEEECCSCSSEEEHHHHHHHHTSCEEECSTTCEEETTTTEEECEEEEEEEEECCSEEEEE
T ss_pred EEEEEeCCCCceecccccceeeeecccccccCCHHHHHHHhCCcccccCCcccccCCcccccceEEEEEEecCCcEEEEE
Confidence 99999999999999999999999999864 5899999999999999999999999997 67899999999999999999
Q ss_pred EeeEEEecccCeeeeccceEeeCc-ccccccccCCCCCCCcCcCCCccEEEEEEEEeeeccCCceEEEEEEeCCCCCEEE
Q 037461 392 LKRFEYDFMRDTMVKINDRYEFPL-QLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYK 470 (1077)
Q Consensus 392 LkRF~~d~~~~~~~Ki~~~v~FP~-~LdL~~~~~~yl~~~~~~~~~~~Y~L~gVVvH~Gs~~~GHY~ayvr~~~~~~Wy~ 470 (1077)
|+||.|+.. ...|+++.|.||. .||| ++|+..+. .....|+|+|||+|.|++++|||+||+|...+++||+
T Consensus 297 LkRF~~~~~--~~~K~~~~v~fp~~~Ldl----~~~~~~~~--~~~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~~W~~ 368 (396)
T 2gfo_A 297 LKRFSYDGR--WKQKLQTSVDFPLENLDL----SQYVIGPK--NNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFK 368 (396)
T ss_dssp ECCEEECSS--SEEECCCEEECCSSCBCC----GGGBCSCC--SSCCCBEEEEEEEEESCTTTCEEEEEEEETTTTEEEE
T ss_pred ecceeccCc--cceecCceEecchhhccc----cccccCCC--CCCceEEEEEEEEecCCCCCCceEEEEcCCCCCCEEE
Confidence 999999743 4679999999995 6999 78876532 2356899999999999999999999999977899999
Q ss_pred EeCceeeEecHHHHHHHhcCCCCCCCCCCCCCCCCCccccCCCcEEEEEEEecc
Q 037461 471 FDDERVTKEDLKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRES 524 (1077)
Q Consensus 471 fnD~~Vt~vs~~evl~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~AYmLfY~R~~ 524 (1077)
|||+.|++++.++|+ +.+||||||+|.+
T Consensus 369 fnD~~V~~v~~~~v~--------------------------~~~aYiLfY~r~~ 396 (396)
T 2gfo_A 369 FDDHEVSDISVSSVK--------------------------SSAAYILFYTSLG 396 (396)
T ss_dssp EETTEEEECCHHHHS--------------------------CTTEEEEEEECC-
T ss_pred EeCCCeEECCHHHcC--------------------------CCCceEEEEEEcC
Confidence 999999999999883 2489999999864
No 7
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=100.00 E-value=4.4e-56 Score=510.01 Aligned_cols=293 Identities=27% Similarity=0.446 Sum_probs=251.0
Q ss_pred cceeecccCCcccchhhhhHHHhhhHHHHHHhccCCCC---CCCCCCCCHHHHHHHHHHHHhcCC--Ccccchhhhhhcc
Q 037461 196 TGYVGLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTT---ENDMPSGSIPLALQSLFYKLQYSD--SSVATKELTKSFG 270 (1077)
Q Consensus 196 ~g~vGL~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~~~~---~~~~~~~~l~~~Lq~Lf~~l~~s~--~~v~~~~l~~s~~ 270 (1077)
||++||.|+||||||||+||+|+++|+||+++++.... .......++..+|+.||..|+.+. .+++|..|...++
T Consensus 1 TG~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~v~p~~~~~~l~ 80 (355)
T 3i3t_A 1 SGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHPDSCEAVNPTRFRAVFQ 80 (355)
T ss_dssp --CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC------CHHHHHHHHHHHHTSSCSSCCCBCCHHHHHHHH
T ss_pred CCCcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcCCCCchhHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Confidence 69999999999999999999999999999999864321 111223578999999999999854 6799999999886
Q ss_pred --CCcccccccccHHHHHHHHHHHHHHHhcCCc--------------------------------------------ccc
Q 037461 271 --WDTYDSFMQHDVQELNRVLSEKLEDKMKGTV--------------------------------------------VEG 304 (1077)
Q Consensus 271 --~~~~~~~~QqDa~Efl~~Lld~Le~e~~~~~--------------------------------------------~~~ 304 (1077)
++.|..+.||||+||++.||+.|+++++... ..+
T Consensus 81 ~~~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 160 (355)
T 3i3t_A 81 KYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDS 160 (355)
T ss_dssp HHCGGGCSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHHHHHHCCS
T ss_pred HhChhhCCCCccCHHHHHHHHHHHHHHHHhhhccCCCcccccCcccCccccccccccCCCCCHHHHHHHHHHHhhhccCC
Confidence 5678899999999999999999999986432 124
Q ss_pred ccccccceEEeeEEEeeeeeeecceeeeeeeeeeeecCC------CCHHHHHhhccceEEecCCCcccccccC-eeecee
Q 037461 305 TIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGC------RDVYASFDKYVEVERLEGDNKYHAEQYG-LQDAKK 377 (1077)
Q Consensus 305 ~i~~lF~G~~~~~i~C~~C~~~s~~~E~f~~L~L~v~~~------~sL~esL~~~~~~E~l~g~n~y~C~~c~-~~~a~k 377 (1077)
.|.++|+|++.+.+.|..|++.+.+.++|++|+|+++.. .+|++||+.|+.+|.++|+|+|.|+.|+ ++.|.|
T Consensus 161 ~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~~~~~~sl~~~L~~~~~~e~l~~~n~~~C~~C~~~~~a~k 240 (355)
T 3i3t_A 161 KIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTK 240 (355)
T ss_dssp HHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCC-------CBHHHHHHHHHCCEEECGGGCCCCSSSCCCCCEEE
T ss_pred cccccccEEEEeeEEeCCCCCCceeeccceeecccCCccccccCccCHHHHHHHhCCccccCCCCCeeCCCCCCccceEE
Confidence 588999999999999999999999999999999999763 4999999999999999999999999997 678999
Q ss_pred eEEeccCCCeEEEEEeeEEEecccCeeeeccceEeeCc-ccccccccCCCCCCCcCcCCCccEEEEEEEEeeeccCCceE
Q 037461 378 GVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPL-QLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHY 456 (1077)
Q Consensus 378 ~~~i~~lP~vLiI~LkRF~~d~~~~~~~Ki~~~v~FP~-~LdL~~~~~~yl~~~~~~~~~~~Y~L~gVVvH~Gs~~~GHY 456 (1077)
+..|.++|+||+|||+||.++ .+...|++..|.||. .||| ++|+... .....|+|+|||+|.|+.++|||
T Consensus 241 ~~~i~~lP~vL~i~lkRF~~~--~~~~~K~~~~v~fp~~~l~l----~~~~~~~---~~~~~Y~L~avv~H~G~~~~GHY 311 (355)
T 3i3t_A 241 KLTVQRFPRILVLHLNRFSAS--RGSIKKSSVGVDFPLQRLSL----GDFASDK---AGSPVYQLYALCNHSGSVHYGHY 311 (355)
T ss_dssp EEEEEECCSEEEEEECCEECC--SSCCEECCCCCBCCSSCEEC----GGGBC-------CCEEEEEEEEEEEEETTEEEE
T ss_pred EEEcccCChheEEEhhheecC--CCCceECCcceeCCccccCc----hhhccCC---CCCcceEEEEEEEecCCCCCCeE
Confidence 999999999999999999876 466789999999995 5999 7777543 24568999999999999999999
Q ss_pred EEEEEeCCCCCEEEEeCceeeEecHHHHHHHhcCCCCCCCCCCCCCCCCCccccCCCcEEEEEEEeccC
Q 037461 457 YAFIRPTLSDQWYKFDDERVTKEDLKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRESD 525 (1077)
Q Consensus 457 ~ayvr~~~~~~Wy~fnD~~Vt~vs~~evl~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~AYmLfY~R~~~ 525 (1077)
+||+|. ++.||+|||+.|+++++++|+. .+||||||+|.+.
T Consensus 312 ~~~~~~--~~~W~~~nD~~V~~v~~~~v~~--------------------------~~aYiLfY~r~~~ 352 (355)
T 3i3t_A 312 TALCRC--QTGWHVYNDSRVSPVSENQVAS--------------------------SEGYVLFYQLMQE 352 (355)
T ss_dssp EEEEEE--TTEEEEEETTEEEEECHHHHHT--------------------------SCCSEEEEEEC--
T ss_pred EEEEEc--CCeEEEEcCCCcEECCHHHcCC--------------------------CCcEEEEEEeccC
Confidence 999999 5779999999999999999963 4899999999864
No 8
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=100.00 E-value=3.6e-55 Score=512.37 Aligned_cols=302 Identities=23% Similarity=0.377 Sum_probs=256.0
Q ss_pred ccceeecccCCcccchhhhhHHHhhhHHHHHHhccCCCCC--C--CCCCCCHHHHHHHHHHHHhcCCCcccchhhhhhcc
Q 037461 195 ETGYVGLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTTE--N--DMPSGSIPLALQSLFYKLQYSDSSVATKELTKSFG 270 (1077)
Q Consensus 195 ~~g~vGL~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~--~--~~~~~~l~~~Lq~Lf~~l~~s~~~v~~~~l~~s~~ 270 (1077)
..+++||.|+||||||||+||+|+++|+||++++...... . ..+..++.++|++||..|+.+..+++|..|+..++
T Consensus 11 ~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~v~P~~~~~~l~ 90 (404)
T 2ayn_A 11 MELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTSSSIPPIILLQFLH 90 (404)
T ss_dssp CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHHCSEECCHHHHHHHH
T ss_pred cCCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCCCCcccHHHHHHHHHHHHHhcCCCcCChHHHHHHHH
Confidence 4567999999999999999999999999999998765421 1 11235799999999999999888999999998775
Q ss_pred C--Cccc------ccccccHHHHHHHHHHHHHHHhcCCc-------------------cccccccccceEEeeEEEeeee
Q 037461 271 W--DTYD------SFMQHDVQELNRVLSEKLEDKMKGTV-------------------VEGTIQQLFEGHHMNYIECINV 323 (1077)
Q Consensus 271 ~--~~~~------~~~QqDa~Efl~~Lld~Le~e~~~~~-------------------~~~~i~~lF~G~~~~~i~C~~C 323 (1077)
. +.|. .+.||||+||++.||+.|+++++... ..+.|.++|+|++.+.++|..|
T Consensus 91 ~~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~e~~~~~~~~~~~~~~~s~i~~~F~G~l~s~i~C~~C 170 (404)
T 2ayn_A 91 MAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAATPSKKKSLIDQFFGVEFETTMKCTES 170 (404)
T ss_dssp HHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC------------------CCHHHHHTCEEEEEEEEESSS
T ss_pred HhCchhhccccCCCccccCHHHHHHHHHHHHHHHhccccCCcccccchhhhhhhhccccCchhhhhccEEEEEEEEecCC
Confidence 2 3343 58999999999999999999987543 3467899999999999999999
Q ss_pred eeec--ceeeeeeeeeeeecCC-CCHHHHHhhccceEEecCCCcccccccC-eeeceeeEEeccCCCeEEEEEeeEEEec
Q 037461 324 DYKS--TRKESFYDLQLDVKGC-RDVYASFDKYVEVERLEGDNKYHAEQYG-LQDAKKGVLFIDFPPVLQLQLKRFEYDF 399 (1077)
Q Consensus 324 ~~~s--~~~E~f~~L~L~v~~~-~sL~esL~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vLiI~LkRF~~d~ 399 (1077)
++.+ .+.|+|++|+|+|++. .+|++||+.++. |.++ |.|+.|+ .+.+.|+..|.++|+||+|||+||.|+.
T Consensus 171 ~~~s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~-e~l~----~~c~~c~~~~~~~k~~~i~~lP~vL~i~LkRF~~~~ 245 (404)
T 2ayn_A 171 EEEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQ-EEIT----KQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKE 245 (404)
T ss_dssp CCCCCBCCEEEESSEEEECSSSCCBHHHHHHHTTE-ECCC----CEETTTTEECCEEEEEEEEECCSSEEEEEECBCCCC
T ss_pred CCccCceeeccCceEEeecCCCcccHHHHHHHhcc-ccee----ecchhhCCccceeeeeeHhhCCCceEEEEEEEEEec
Confidence 9995 7899999999999875 589999999997 4454 7899998 5678999999999999999999999998
Q ss_pred ccCeeeeccceEeeCcccccccccCCCCCCCc-----------------------------------------------C
Q 037461 400 MRDTMVKINDRYEFPLQLDLDRENGKYLSPDA-----------------------------------------------D 432 (1077)
Q Consensus 400 ~~~~~~Ki~~~v~FP~~LdL~~~~~~yl~~~~-----------------------------------------------~ 432 (1077)
.++...|++++|.||..||| .+|+.... .
T Consensus 246 ~~~~~~Ki~~~v~fP~~Ldl----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 321 (404)
T 2ayn_A 246 KESVNAKVLKDVKFPLMLDM----YELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIG 321 (404)
T ss_dssp SSSSCCBCCCCCBCCSEEEC----GGGBCHHHHHHTTTTTGGGTCTTC----------------------CCCCCSCTTT
T ss_pred ccCceeccCceeccCceeEH----hHhcChhhhhhcchhhhHHhhhhcccchhhhhhccccccccccccccccccccccC
Confidence 77788999999999999999 56654210 0
Q ss_pred cCCCccEEEEEEEEeee-ccCCceEEEEEEeCCCCCEEEEeCceeeEecHHHHHHHhcCCCCCCCCCCCCCCCCCccccC
Q 037461 433 RSVRNLYTLHSVLVHSG-GVHGGHYYAFIRPTLSDQWYKFDDERVTKEDLKRALEEQYGGEEELPQTNPGFNNTPFKFTK 511 (1077)
Q Consensus 433 ~~~~~~Y~L~gVVvH~G-s~~~GHY~ayvr~~~~~~Wy~fnD~~Vt~vs~~evl~~~~Gg~~~~~~~~~~~~~~~~~~~~ 511 (1077)
......|+|+|||+|.| ++++|||+||||.. +++||+|||+.|++++.++|+...+||.
T Consensus 322 ~~~~~~Y~L~avv~H~G~s~~~GHY~a~v~~~-~~~W~~fnD~~V~~v~~~~v~~~~~g~~------------------- 381 (404)
T 2ayn_A 322 SNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRK-QDEWIKFDDDKVSIVTPEDILRLSGGGD------------------- 381 (404)
T ss_dssp TCCCSEEEEEEEEEEESSSTTSSEEEEEEEEE-TTEEEEEBTTBCCCBCHHHHGGGGSSSS-------------------
T ss_pred cCCCceEEEEEEEEecCCCCCCCCeEEEEECC-CCeEEEeecccceecCHHHHHhhhCCCC-------------------
Confidence 12347899999999999 69999999999985 7899999999999999999988776653
Q ss_pred CCcEEEEEEEeccC
Q 037461 512 YSNAYMLVYIRESD 525 (1077)
Q Consensus 512 ~~~AYmLfY~R~~~ 525 (1077)
+.+||||||+|.+.
T Consensus 382 ~~~aYiLfY~r~~~ 395 (404)
T 2ayn_A 382 WHIAYVLLYGPRRV 395 (404)
T ss_dssp SCEEEEEEEECC--
T ss_pred CceEEEEEEEecCC
Confidence 35899999999874
No 9
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=100.00 E-value=2.7e-54 Score=507.02 Aligned_cols=299 Identities=24% Similarity=0.347 Sum_probs=249.0
Q ss_pred ccccceeecccCCcccchhhhhHHHhhhHHHHHHhccCCCCCCCCC--------CCCHHHHHHHHHHHHhcCC-Ccccch
Q 037461 193 KKETGYVGLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTTENDMP--------SGSIPLALQSLFYKLQYSD-SSVATK 263 (1077)
Q Consensus 193 k~~~g~vGL~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~~~--------~~~l~~~Lq~Lf~~l~~s~-~~v~~~ 263 (1077)
....+++||.|+||||||||+||+|+++|+||++++.......... ..++.++|++||..|+.+. .+++|.
T Consensus 19 ~~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~v~p~ 98 (415)
T 1vjv_A 19 QFAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLPV 98 (415)
T ss_dssp CCCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-CCEECCH
T ss_pred ccCCCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCcccccccchhHHHHHHHHHHHHHhcCCCCccCHH
Confidence 3456789999999999999999999999999999988654322211 2379999999999999976 789999
Q ss_pred hhhhhccC--Cccc-------ccccccHHHHHHHHHHHHHHHhcCCccccccccccceEEeeEEEeeeeeeec--ceeee
Q 037461 264 ELTKSFGW--DTYD-------SFMQHDVQELNRVLSEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKS--TRKES 332 (1077)
Q Consensus 264 ~l~~s~~~--~~~~-------~~~QqDa~Efl~~Lld~Le~e~~~~~~~~~i~~lF~G~~~~~i~C~~C~~~s--~~~E~ 332 (1077)
.|+..++. +.|. .+.||||+||++.||+.|++++++ +.|.++|+ ++.+.+.|..|++.+ .+.|+
T Consensus 99 ~~~~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~----~~i~~~F~-~~~~~~~C~~C~~~s~s~~~e~ 173 (415)
T 1vjv_A 99 VLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD----KFSEDFRI-QFKTTIKDTANDNDITVKENES 173 (415)
T ss_dssp HHHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH----HHHTTTCE-EEEEEEEETTEEEEEEEECCCE
T ss_pred HHHHHHHHhCchhhccccCCCCccccCHHHHHHHHHHHHHHHhcc----chHHHHHH-hheEEEEECCCCCCcccccccc
Confidence 99887652 3444 789999999999999999999864 67899999 999999999999987 58999
Q ss_pred eeeeeeeecCC-CCHHHHHhhccceEEecCCCcccccccC-eeeceeeEEeccCCCeEEEEEeeEEEecccCeeeeccce
Q 037461 333 FYDLQLDVKGC-RDVYASFDKYVEVERLEGDNKYHAEQYG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDR 410 (1077)
Q Consensus 333 f~~L~L~v~~~-~sL~esL~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vLiI~LkRF~~d~~~~~~~Ki~~~ 410 (1077)
|++|+|+|++. .+|++||+.++.. .++ |.|+.|+ .+.+.|+..|.++|+||+|||+||.|+..++...|++++
T Consensus 174 f~~Lsl~i~~~~~~l~~~L~~~~~e-~i~----~~c~~c~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~ 248 (415)
T 1vjv_A 174 DSKLQCHISGTTNFMRNGLLEGLNE-KIE----KRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRK 248 (415)
T ss_dssp ESCEEECCCTTCCBHHHHHHHHHEE-C-------------CCCCEEEEEEEEECBSEEEEEECCEEEETTTTEEEECCCC
T ss_pred ceeeeeccccccchHHHHHHHHhhh-hhh----hcccccCCcccEEEEEEcccCCCeeEEEEEEEEEeCCCCcchhhcCc
Confidence 99999999876 5799999999874 343 7899997 568999999999999999999999999888889999999
Q ss_pred EeeCcccccccccCCCCCCC------------------------------------------------------------
Q 037461 411 YEFPLQLDLDRENGKYLSPD------------------------------------------------------------ 430 (1077)
Q Consensus 411 v~FP~~LdL~~~~~~yl~~~------------------------------------------------------------ 430 (1077)
|.||..||| .+|+...
T Consensus 249 V~FP~~Ldl----~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 324 (415)
T 1vjv_A 249 VVFPFQLDV----ADMLTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESEKDQW 324 (415)
T ss_dssp CBCCSEEEC----GGGBCHHHHHHHHHHHHHHHHHHHHHHHC----------------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcEeEh----HHhcChhhhhhhhhhHHHHHHHhhhhhhhhhhhhhccccccccccccccchhhhhchhhHHhhhhhh
Confidence 999999999 6665421
Q ss_pred -------------cCcCCCccEEEEEEEEeee-ccCCceEEEEEEe-CCCCCEEEEeCceeeEecHHHHHHHhcCCCCCC
Q 037461 431 -------------ADRSVRNLYTLHSVLVHSG-GVHGGHYYAFIRP-TLSDQWYKFDDERVTKEDLKRALEEQYGGEEEL 495 (1077)
Q Consensus 431 -------------~~~~~~~~Y~L~gVVvH~G-s~~~GHY~ayvr~-~~~~~Wy~fnD~~Vt~vs~~evl~~~~Gg~~~~ 495 (1077)
........|+|+|||+|.| ++++|||+||||. ..+++||+|||+.|++++.++|+...+||.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~s~~~GHY~a~vr~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~--- 401 (415)
T 1vjv_A 325 LEEYKKHFPPNLEKGENPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGE--- 401 (415)
T ss_dssp HHHHHTTSCTTCCTTBCSSSEEEEEEEEEEESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEECHHHHHGGGCCTT---
T ss_pred hhhcccccccccccccCCCceEEEEEEEEecCCCCCCCCEEEEEeCCCCCCcEEEeECCcCeEcCHHHHhhhcCCCC---
Confidence 0112457899999999999 7999999999998 558999999999999999999988776763
Q ss_pred CCCCCCCCCCCccccCCCcEEEEEEEecc
Q 037461 496 PQTNPGFNNTPFKFTKYSNAYMLVYIRES 524 (1077)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~AYmLfY~R~~ 524 (1077)
+.+||||||+|++
T Consensus 402 ----------------~~~aYiLfY~r~~ 414 (415)
T 1vjv_A 402 ----------------SDSALILMYKGFG 414 (415)
T ss_dssp ----------------SCEEEEEEEEETT
T ss_pred ----------------cceEEEEEEEecC
Confidence 3589999999975
No 10
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=100.00 E-value=3.6e-52 Score=497.55 Aligned_cols=299 Identities=29% Similarity=0.486 Sum_probs=253.7
Q ss_pred ccccceeecccCCcccchhhhhHHHhhhHHHHHHhccCCCC---CCCCCCCCHHHHHHHHHHHHhcCCC----------c
Q 037461 193 KKETGYVGLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTT---ENDMPSGSIPLALQSLFYKLQYSDS----------S 259 (1077)
Q Consensus 193 k~~~g~vGL~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~~~~---~~~~~~~~l~~~Lq~Lf~~l~~s~~----------~ 259 (1077)
...+|++||.|+||||||||+||+|+++|+||++++..... ....+..++.++|+.+|..|+.... .
T Consensus 136 ~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~ 215 (476)
T 3mhs_A 136 ERRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQASSSSTST 215 (476)
T ss_dssp GGTTCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSCCTTTCHHHHHHHHHHHHHSCCCC--------CC
T ss_pred cCCCCCCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhhhccCCCcccchHHHHHHHHHHHhhcccccccccccccc
Confidence 46789999999999999999999999999999999854211 2234567899999999999986321 2
Q ss_pred ccchhhhhhcc-----CCcccccccccHHHHHHHHHHHHHHHhcCC-------------ccccccccccceEEeeEEEee
Q 037461 260 VATKELTKSFG-----WDTYDSFMQHDVQELNRVLSEKLEDKMKGT-------------VVEGTIQQLFEGHHMNYIECI 321 (1077)
Q Consensus 260 v~~~~l~~s~~-----~~~~~~~~QqDa~Efl~~Lld~Le~e~~~~-------------~~~~~i~~lF~G~~~~~i~C~ 321 (1077)
+.+..+...++ .+.|.++.||||+||++.||+.|+++++.. ...+.|.++|+|++.+.+.|.
T Consensus 216 ~~~~~~~~~l~~~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~G~l~~~~~C~ 295 (476)
T 3mhs_A 216 NRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNKQCECIVHTVFEGSLESSIVCP 295 (476)
T ss_dssp CSCHHHHHHHHHHHHHCGGGSSSSCEEHHHHHHHHHHHHHHHHHHHCCC-------CCCSCCSHHHHHSCEEEEEEEECT
T ss_pred cCcchHHHHHHHHHHhccccCCCCCcCHHHHHHHHHHHHHHHHhhcccccccccccccccCCCcceeecceEEEEEEEEC
Confidence 34444433332 356888999999999999999999887421 124578999999999999999
Q ss_pred eeeeecce-eeeeeeeeeeecCCCCHHHHHhhccceEEecCCCcccccccC-eeeceeeEEeccCCCeEEEEEeeEEEec
Q 037461 322 NVDYKSTR-KESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYHAEQYG-LQDAKKGVLFIDFPPVLQLQLKRFEYDF 399 (1077)
Q Consensus 322 ~C~~~s~~-~E~f~~L~L~v~~~~sL~esL~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vLiI~LkRF~~d~ 399 (1077)
.|++.+.. .++|++|+|+|++..+|+++|+.|+.+|.++|.+ |.|+.|+ ++.|.|+..|.++|+||+|||+||.|+.
T Consensus 296 ~C~~~s~~~~e~f~~LsL~i~~~~sl~~~L~~~~~~E~l~~~~-~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~ 374 (476)
T 3mhs_A 296 GCQNNSKTTIDPFLDLSLDIKDKKKLYECLDSFHKKEQLKDFN-YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLL 374 (476)
T ss_dssp TTCCCCEEEEEEESCEEECCTTCCBHHHHHHHHHCCEECSSCC-CEETTTTEECCCEEEEEEEEBCSEEEEEECCEEECT
T ss_pred CCCCeeCCcccchhhhccchhhhhHHHHHHHHhcChhhccCCC-CcCCccCCcccEEEEEEcccCCcceEEEeeeccccC
Confidence 99999754 8999999999999999999999999999999755 9999997 6789999999999999999999999874
Q ss_pred ccCeeeeccceEeeCcccccccccCCCCCCCcC-------cCCCccEEEEEEEEeeeccCCceEEEEEEeCCCCCEEEEe
Q 037461 400 MRDTMVKINDRYEFPLQLDLDRENGKYLSPDAD-------RSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFD 472 (1077)
Q Consensus 400 ~~~~~~Ki~~~v~FP~~LdL~~~~~~yl~~~~~-------~~~~~~Y~L~gVVvH~Gs~~~GHY~ayvr~~~~~~Wy~fn 472 (1077)
.+...|+++.|.||..||| ++|+..... ......|+|+|||+|.|+.++|||+||+|.. +++||+||
T Consensus 375 -~~~~~K~~~~V~fP~~Ldl----~~~~~~~~~~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~vr~~-~~~W~~fn 448 (476)
T 3mhs_A 375 -NGSNRKLDDFIEFPTYLNM----KNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGTVNEGHYIAFCKIS-GGQWFKFN 448 (476)
T ss_dssp -TSCEEECCCCCBCCSEEEC----GGGBSCCBCCC--CCCBCCCEEEEEEEEEEEEECSSSEEEEEEEECT-TSCEEEEE
T ss_pred -CCCeEECCEEEcCCCeeec----hhhcCcccccccccccCCCCCcEEEEEEEEeCCCCCCCceEEEEECC-CCcEEEEe
Confidence 3568899999999999999 777765432 2346789999999999999999999999975 78999999
Q ss_pred CceeeEecHHHHHHHhcCCCCCCCCCCCCCCCCCccccCCCcEEEEEEEecc
Q 037461 473 DERVTKEDLKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRES 524 (1077)
Q Consensus 473 D~~Vt~vs~~evl~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~AYmLfY~R~~ 524 (1077)
|+.|+++++++|+. .+||||||+|++
T Consensus 449 D~~V~~v~~~~v~~--------------------------~~aYiLfY~r~~ 474 (476)
T 3mhs_A 449 DSMVSSISQEEVLK--------------------------EQAYLLFYTIRQ 474 (476)
T ss_dssp TTEEEEECHHHHTT--------------------------SCEEEEEEEEEE
T ss_pred CCceEECCHHHhcc--------------------------CCcEEEEEEEec
Confidence 99999999999953 489999999975
No 11
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.5e-49 Score=498.06 Aligned_cols=223 Identities=22% Similarity=0.333 Sum_probs=196.9
Q ss_pred ccccceeecccCCcccchhhhhHHHhhhHHHHHHhccCCC----CCCCCCCCCHHHHHHHHHHHHhcC------------
Q 037461 193 KKETGYVGLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPT----TENDMPSGSIPLALQSLFYKLQYS------------ 256 (1077)
Q Consensus 193 k~~~g~vGL~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~~~----~~~~~~~~~l~~~Lq~Lf~~l~~s------------ 256 (1077)
...+|++||.|+||||||||+||+|+++|+||++++.... .....+..++.++|++||..|+.+
T Consensus 339 ~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~~~ 418 (854)
T 3ihp_A 339 LFGPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDG 418 (854)
T ss_dssp CCSTTCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHHHHHHCCSCGGGCHHHHHHHHHHHHHSCC-----------
T ss_pred ccCCCccceEecCCceehhHHHHHHhCcHHHHHHHHhhhhhhhccccCCccccHHHHHHHHHHHHhcccccccccccccc
Confidence 3467999999999999999999999999999999974221 122345578999999999999853
Q ss_pred ---------CCcccchhhhhhccC--CcccccccccHHHHHHHHHHHHHHHhcCCccccccccccceEEeeEEEeeeeee
Q 037461 257 ---------DSSVATKELTKSFGW--DTYDSFMQHDVQELNRVLSEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDY 325 (1077)
Q Consensus 257 ---------~~~v~~~~l~~s~~~--~~~~~~~QqDa~Efl~~Lld~Le~e~~~~~~~~~i~~lF~G~~~~~i~C~~C~~ 325 (1077)
...++|..|...+++ ..|..+.||||+||++.||+.|++++++ .+.|.++|+|++.+.+.|..|++
T Consensus 419 ~~~~~~~~~~~~isP~~f~~~l~~~~~~F~~~~QQDA~EFl~~LLd~L~~el~~---~s~i~~lF~G~l~s~i~C~~C~~ 495 (854)
T 3ihp_A 419 ERVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERNCRS---SENPNEVFRFLVEEKIKCLATEK 495 (854)
T ss_dssp ----------CCBCCHHHHHHHTTTCTTTTSSSCCBHHHHHHHHHHHHHHTCTT---SCCGGGGTCEEEEEEEEETTTTE
T ss_pred ccccccccCCCccChHHHHHHHhhhccccccccccCHHHHHHHHHHHHHHHhcc---cCCchhhcCceEEEEEEecCCCC
Confidence 347889999998875 5788899999999999999999999865 45789999999999999999999
Q ss_pred ecceeeeeeeeeeeecCC--------------------------------CCHHHHHhhccceEEecCCCcccccccC-e
Q 037461 326 KSTRKESFYDLQLDVKGC--------------------------------RDVYASFDKYVEVERLEGDNKYHAEQYG-L 372 (1077)
Q Consensus 326 ~s~~~E~f~~L~L~v~~~--------------------------------~sL~esL~~~~~~E~l~g~n~y~C~~c~-~ 372 (1077)
.+.+.++|++|+|+|+.. .+|++||+.|+.+|.++| |.|+.|+ +
T Consensus 496 vs~t~e~F~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~sL~dcL~~f~~~E~Le~---y~C~~C~~k 572 (854)
T 3ihp_A 496 VKYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKMALPELVRAQVPFSSCLEAYGAPEQVDD---FWSTALQAK 572 (854)
T ss_dssp EEEEEEEESEEEECCCGGGCTTHHHHHHHHHHHHHHHHTTCCCCCCCCEECCHHHHHHHHHSCEEEEE---EEETTTTEE
T ss_pred EeEEeeeceEEEeeCCccccccccchhhhcccccccccccccccccccCCCCHHHHHHHhcCceEeee---eeccccCCc
Confidence 999999999999999853 389999999999999997 9999998 6
Q ss_pred eeceeeEEeccCCCeEEEEEeeEEEecccCeeeeccceEeeCcccccccc
Q 037461 373 QDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRE 422 (1077)
Q Consensus 373 ~~a~k~~~i~~lP~vLiI~LkRF~~d~~~~~~~Ki~~~v~FP~~LdL~~~ 422 (1077)
+.|.|+..|.++|+||+||||||.|+.. +...|+++.|.||..|||++|
T Consensus 573 ~~a~K~~~i~~lP~vLiihLkRF~~d~~-~~~~Ki~~~V~FP~~LDl~~y 621 (854)
T 3ihp_A 573 SVAVKTTRFASFPDYLVIQIKKFTFGLD-WVPKKLDVSIEMPEELDISQL 621 (854)
T ss_dssp EEEEEEEEESSCCSEEEEEECCEEECGG-GCEEECCEECCCCSEEECGGG
T ss_pred ceeeEEEEeeeCCceEEEEeehheecCC-CceEECCeEEecCCcEehHHh
Confidence 7899999999999999999999999865 678899999999999999554
No 12
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=99.91 E-value=1.6e-24 Score=219.51 Aligned_cols=133 Identities=27% Similarity=0.513 Sum_probs=117.5
Q ss_pred CCCCCCcEEEEEEccccccCCCeeecCcEEECCeeEEEEEEeCCC----CCCceEEEEEecCCCCCCCCceEEEEEEEEE
Q 037461 49 LDDPPSSRFTWRIENFSRLNTKKHYSEIFIVGGFKWRVLIFPKGN----NVDHLSMYLDVADSSSLPYGWSRYAQFSLAV 124 (1077)
Q Consensus 49 ~~~~~~~~~tw~I~nfS~l~~~~~~Sp~F~vGG~~WrIll~P~Gn----~~~~lSiyL~~~~~~~~~~~W~~~a~f~l~L 124 (1077)
.+...+++|+|+|+|||.++ +.++||+|.+||++|+|++||+|+ ..++||+||.|... ..+.+|+++|+|+|.|
T Consensus 13 ~~~~~~~~~~w~I~nfS~~~-~~~~S~~f~~gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~~~l~l 90 (155)
T 2foj_A 13 TSWRSEATFQFTVERFSRLS-ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKI 90 (155)
T ss_dssp CTTCSEEEEEEEESSGGGCC-SCEECCCEEETTEEEEEEEEEEC------CBEEEEEEEESTT-CCCSSCEEEEEEEEEE
T ss_pred CCcCCCcEEEEEECChhhcC-CceEcCCEEECCccEEEEEEECCCCCCCCCCEEEEEEEeCCC-CCCCCCEEEEEEEEEE
Confidence 35678899999999999995 899999999999999999999996 34799999999654 3467899999999999
Q ss_pred EeecCCcceeeecceeecCCCCCCCcccccccccccCCCCCCcccccceeeeEEEEEEe
Q 037461 125 INQIHSKYSVRKDTQHQFNARESDWGFTSFMPLGELYDPNRGYLVNDTLIVEAEVIVRR 183 (1077)
Q Consensus 125 ln~~~~~~~~~~~~~h~F~~~~~dwGf~~Fi~l~~L~~~~~gfl~nD~l~Ie~~V~V~~ 183 (1077)
+|+.++..+..+...|.|.....+|||.+||++++|.++++|||+||+++|+|+|+|.+
T Consensus 91 ~~~~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~ 149 (155)
T 2foj_A 91 INYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADA 149 (155)
T ss_dssp CCSSCGGGCEEEEEEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECC
T ss_pred EcCCCCcceEEeccEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeC
Confidence 99988775666777899988788999999999999988899999999999999999954
No 13
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.90 E-value=1.4e-24 Score=242.08 Aligned_cols=216 Identities=19% Similarity=0.238 Sum_probs=139.6
Q ss_pred eeecccCCcccchhhhhHHHhhhHHHHHHhccCCCCCCCCCC-CCHHHHH-HHHHHHHhcCCCcccchhhhhh-------
Q 037461 198 YVGLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTTENDMPS-GSIPLAL-QSLFYKLQYSDSSVATKELTKS------- 268 (1077)
Q Consensus 198 ~vGL~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~~~~-~~l~~~L-q~Lf~~l~~s~~~v~~~~l~~s------- 268 (1077)
.+||.|+||||||||.||+|+.+|.+++.++..+......+. ..+..+| ..+|..|.. .++.|..++..
T Consensus 9 p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~~~~~~~~~~~~~l~~~L~r~i~~~Lrk--~~~~P~~~l~~LR~~~pQ 86 (374)
T 2vhf_A 9 KKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKNDVEYYSETQELLRTEIVNPLRI--YGYVCATKIMKLRKILEK 86 (374)
T ss_dssp SCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHCCCCTTSCTTHHHHHHHHHHTTHHHHHH--TSEECHHHHHHHHHHHHH
T ss_pred CccccCCCcCcHHHHHHHHHHhchHHHHHHHhCCCCCCcchhHHHHHHHHHHHHHHHHhh--cCCCcHHHHHHHHHHhHH
Confidence 489999999999999999999999999999877543222111 2477788 899999986 66666555443
Q ss_pred ccCCcccccccccHHHHHHHHHHHHHHH-hc--CCc-----cccccccccceEEeeEEEeeeeeeecceeeeeeeeeeee
Q 037461 269 FGWDTYDSFMQHDVQELNRVLSEKLEDK-MK--GTV-----VEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDV 340 (1077)
Q Consensus 269 ~~~~~~~~~~QqDa~Efl~~Lld~Le~e-~~--~~~-----~~~~i~~lF~G~~~~~i~C~~C~~~s~~~E~f~~L~L~v 340 (1077)
|++.....++||||.||+..|+..|... .. ... ..+.+.++|. ...+.
T Consensus 87 fae~~G~~~~QQDaEE~~t~Ll~~L~~~ep~lkl~s~~~~~~~~~~~q~f~----------------E~~e~-------- 142 (374)
T 2vhf_A 87 VEAASGFTSEEKDPEEFLNILFHHILRVEPLLKIRSAGQKVQDCYFYQIFM----------------EKNEK-------- 142 (374)
T ss_dssp HC--------CCCHHHHHHHHHTTTTCCCCSEEEEETTCCCEEESCEECCC----------------CCC----------
T ss_pred HhcccCCCccccCHHHHHHHHHHHHhhcccccccccccccccccHHHHHhc----------------Ccccc--------
Confidence 3444334689999999999999988643 21 000 0012222222 00000
Q ss_pred cCCCCHHHHHhhccceEEecCCCcccccccCeeeceeeEEeccCCCeEEEEEeeEEEecccCeeeeccceEeeCcccccc
Q 037461 341 KGCRDVYASFDKYVEVERLEGDNKYHAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLD 420 (1077)
Q Consensus 341 ~~~~sL~esL~~~~~~E~l~g~n~y~C~~c~~~~a~k~~~i~~lP~vLiI~LkRF~~d~~~~~~~Ki~~~v~FP~~LdL~ 420 (1077)
....+....++.- -...++.|.++|++|+||+.|| +...||-++|.||.+||+.
T Consensus 143 ~~~e~~~qL~e~n--------------------fl~~gikisrLP~yLtVq~vRF------gKkaKIlrkV~fp~eLDvt 196 (374)
T 2vhf_A 143 VGVPTIQQLLEWS--------------------FINSNLKFAEAPSCLIIQMPRF------GKDFKLFKKIFPSLELNIT 196 (374)
T ss_dssp CCCCBHHHHHHHH--------------------HHHHTEEESSCCSEEEEECCCC------SSSSSCCCCCBCCSEECCG
T ss_pred cCCcHHHHhhhHH--------------------HHHcCCeeecCCcceEEeeecc------CccccccCCCCCcchhccH
Confidence 0012233332210 1123345999999999999999 4567999999999999994
Q ss_pred cccCCCCCCC-----------------------------------------------c-------------------CcC
Q 037461 421 RENGKYLSPD-----------------------------------------------A-------------------DRS 434 (1077)
Q Consensus 421 ~~~~~yl~~~-----------------------------------------------~-------------------~~~ 434 (1077)
. +++++ . ...
T Consensus 197 d----l~tdelr~~~vr~kl~e~e~~~~~k~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 272 (374)
T 2vhf_A 197 D----LLEDTPRQCRICGGLAMYECRECYDDPDISAGKIKQFCKTCNTQVHLHPKRLNHKYNPVSLPKDLPDWDWRHGCI 272 (374)
T ss_dssp G----GBSSSCCBCTTTSCBCCEECGGGTTCTTTTTTSCCEECHHHHHHHTTSGGGTTCCCEECCC--------------
T ss_pred h----hcCcchhhccHhHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhhhhcccccccccCccccccccccCCC
Confidence 2 22110 0 001
Q ss_pred CCccEEEEEEEEeeeccCCceEEEEEEeC-CCCCEEEEeC
Q 037461 435 VRNLYTLHSVLVHSGGVHGGHYYAFIRPT-LSDQWYKFDD 473 (1077)
Q Consensus 435 ~~~~Y~L~gVVvH~Gs~~~GHY~ayvr~~-~~~~Wy~fnD 473 (1077)
....|+|.|||+ +++|||+||||.. .+++||.||-
T Consensus 273 psg~yeL~aVlt----adsgHYvafVK~~~~d~~W~~FDs 308 (374)
T 2vhf_A 273 PCQNMELFAVLC----IETSHYVAFVKYGKDDSAWLFFDS 308 (374)
T ss_dssp --CCEEEEEEEE----EETTEEEEEEECSSSTTCEEEEET
T ss_pred CceeEEEEEEEE----ccCCceEEEEEecCCCCCeEEEec
Confidence 226899999999 8999999999973 3789999996
No 14
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=99.89 E-value=2.1e-23 Score=208.86 Aligned_cols=129 Identities=28% Similarity=0.421 Sum_probs=111.5
Q ss_pred CCCCcEEEEEEccccccC---CCeeecCcEEECCe---eEEEEEEeCCCC---CCceEEEEEecCCCCCCCCceEEEEEE
Q 037461 51 DPPSSRFTWRIENFSRLN---TKKHYSEIFIVGGF---KWRVLIFPKGNN---VDHLSMYLDVADSSSLPYGWSRYAQFS 121 (1077)
Q Consensus 51 ~~~~~~~tw~I~nfS~l~---~~~~~Sp~F~vGG~---~WrIll~P~Gn~---~~~lSiyL~~~~~~~~~~~W~~~a~f~ 121 (1077)
....++|+|+|+|||.++ ++.++||+|.+||| +|+|++||+|++ .++||+||.|.+. .+|.++|+|+
T Consensus 7 ~~~~~~~~w~I~~fs~~~~~~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~~~~~~~lSlyL~l~~~----~~w~v~a~f~ 82 (145)
T 3ivv_A 7 KVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKFK 82 (145)
T ss_dssp CCCEEEEEEEESSGGGCCCCTTCCEECCCEEESGGGCEEEEEEEETTCSSGGGTTEEEEEEEEEEC----SSSEEEEEEE
T ss_pred cEEEEEEEEEEcCchHHhhcCCCEEECCCcCCCCcCCceEEEEEEcCCCCCCCCCeEEEEEEEcCC----CCCcEEEEEE
Confidence 456789999999999985 36899999999996 999999999974 4899999999864 4799999999
Q ss_pred EEEEeecCCccee-eecceeecCCCCCCCcccccccccccCCCCCCcccccceeeeEEEEEEee
Q 037461 122 LAVINQIHSKYSV-RKDTQHQFNARESDWGFTSFMPLGELYDPNRGYLVNDTLIVEAEVIVRRV 184 (1077)
Q Consensus 122 l~Lln~~~~~~~~-~~~~~h~F~~~~~dwGf~~Fi~l~~L~~~~~gfl~nD~l~Ie~~V~V~~~ 184 (1077)
|+|+||.++.... .....|+|. ...+|||.+||++++|.++.+|||+||+++|+|+|+|++|
T Consensus 83 l~llnq~~~~~~~~~~~~~~~F~-~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~d 145 (145)
T 3ivv_A 83 FSILNAKGEETKAMESQRAYRFV-QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD 145 (145)
T ss_dssp EEEECTTSCEEEEEECSSCEEEE-TTCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC-
T ss_pred EEEEecCCCceeeecccceEEec-CCCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEEEeC
Confidence 9999998776443 334578896 4688999999999999888899999999999999999874
No 15
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=99.85 E-value=3.7e-22 Score=206.72 Aligned_cols=133 Identities=18% Similarity=0.354 Sum_probs=110.3
Q ss_pred CCCCcEEEEEEccccccCC-------CeeecCcEEEC--CeeEEEEEEeCCCC---CCceEEEEEecCCCC-CCCCceEE
Q 037461 51 DPPSSRFTWRIENFSRLNT-------KKHYSEIFIVG--GFKWRVLIFPKGNN---VDHLSMYLDVADSSS-LPYGWSRY 117 (1077)
Q Consensus 51 ~~~~~~~tw~I~nfS~l~~-------~~~~Sp~F~vG--G~~WrIll~P~Gn~---~~~lSiyL~~~~~~~-~~~~W~~~ 117 (1077)
....|+|+|+|+|||.+++ ..++||+|++| ||+|+|++||+|++ .+|||+||.|.+... ...+|.++
T Consensus 20 ~~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~d~~l~W~v~ 99 (178)
T 4gjh_A 20 ACYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFR 99 (178)
T ss_dssp CCSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEBCCTTGGGSCSSCC
T ss_pred cccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEEEEEECCCCCCCCCEEEEEEEEecCCCCcccCCceE
Confidence 4567999999999998743 27999999999 99999999999974 489999999976542 23579999
Q ss_pred EEEEEEEEeecCCcceeeec-----ceeecC----CCCCCCcccccccccccCCCCCCcccccceeeeEEEEEEe
Q 037461 118 AQFSLAVINQIHSKYSVRKD-----TQHQFN----ARESDWGFTSFMPLGELYDPNRGYLVNDTLIVEAEVIVRR 183 (1077)
Q Consensus 118 a~f~l~Lln~~~~~~~~~~~-----~~h~F~----~~~~dwGf~~Fi~l~~L~~~~~gfl~nD~l~Ie~~V~V~~ 183 (1077)
|+|+|+|+||.++..++... ..+.|. ..+.+|||.+||++++|.++.+|||+||+++|+|+|.|.+
T Consensus 100 a~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i~~ 174 (178)
T 4gjh_A 100 QRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLTD 174 (178)
T ss_dssp CEEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECCTT
T ss_pred EEEEEEEEcCCCCcceeEEeeccCCccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEecC
Confidence 99999999998765444332 356776 3467899999999999988789999999999999997643
No 16
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.83 E-value=1.5e-21 Score=204.99 Aligned_cols=134 Identities=19% Similarity=0.343 Sum_probs=108.9
Q ss_pred CCCCcEEEEEEccccccCC-------CeeecCcEEEC--CeeEEEEEEeCCCC---CCceEEEEEecCCCCC-CCCceEE
Q 037461 51 DPPSSRFTWRIENFSRLNT-------KKHYSEIFIVG--GFKWRVLIFPKGNN---VDHLSMYLDVADSSSL-PYGWSRY 117 (1077)
Q Consensus 51 ~~~~~~~tw~I~nfS~l~~-------~~~~Sp~F~vG--G~~WrIll~P~Gn~---~~~lSiyL~~~~~~~~-~~~W~~~ 117 (1077)
....|+|+|+|+|||.+++ +.++||+|++| ||+|+|++||+|++ .++||+||.+.+++.. ..+|.+.
T Consensus 36 ~~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~yPnG~~~~~~~~lSlyL~l~~g~~D~~l~wp~~ 115 (198)
T 4ghu_A 36 ASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFK 115 (198)
T ss_dssp CCSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred cccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEEEEEeCCCCCCCCCeEEEEEEecCCccCCCCCceEE
Confidence 4567999999999998743 58999999999 99999999999975 4799999999865432 3489999
Q ss_pred EEEEEEEEeecCCcceeeec---------ceeecCCCCCCCcccccccccccCCCCCCcccccceeeeEEEEEEeecc
Q 037461 118 AQFSLAVINQIHSKYSVRKD---------TQHQFNARESDWGFTSFMPLGELYDPNRGYLVNDTLIVEAEVIVRRVVD 186 (1077)
Q Consensus 118 a~f~l~Lln~~~~~~~~~~~---------~~h~F~~~~~dwGf~~Fi~l~~L~~~~~gfl~nD~l~Ie~~V~V~~~~~ 186 (1077)
|+|+|.|+||.++..++... ..+.|...+.+|||.+||++++|. ++|||+||+++|+|+|.|+..++
T Consensus 116 a~~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~--~~gyL~dD~l~I~~~V~v~~~~~ 191 (198)
T 4ghu_A 116 QKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDTSDLPD 191 (198)
T ss_dssp CCEEEEECCCSTTCCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHH--HTTSCBTTBEEEEEEECCTTCC-
T ss_pred EEEEEEEEcCCCCccceEEEeecCcccceecCCcccCcCCcCchhEeEHHHhh--hcCCeeCCEEEEEEEEEeccCCC
Confidence 99999999998664443321 122345567799999999999994 58999999999999999877544
No 17
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=99.82 E-value=2.8e-21 Score=202.63 Aligned_cols=130 Identities=22% Similarity=0.414 Sum_probs=106.0
Q ss_pred CCCcEEEEEEccccccCCC-------eeecCcEEE--CCeeEEEEEEeCCCC---CCceEEEEEecCCCCCC-CCceEEE
Q 037461 52 PPSSRFTWRIENFSRLNTK-------KHYSEIFIV--GGFKWRVLIFPKGNN---VDHLSMYLDVADSSSLP-YGWSRYA 118 (1077)
Q Consensus 52 ~~~~~~tw~I~nfS~l~~~-------~~~Sp~F~v--GG~~WrIll~P~Gn~---~~~lSiyL~~~~~~~~~-~~W~~~a 118 (1077)
...++|+|+|+|||.++++ .++||+|.+ |||+|+|++||+|++ .+|||+||.+.+....+ .+|+++|
T Consensus 40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~W~~~a 119 (192)
T 1ca9_A 40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ 119 (192)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCCcCCCceEE
Confidence 4679999999999998432 499999999 999999999999974 48999999998765444 6899999
Q ss_pred EEEEEEEeecCCcceeeec-----ceeecC----CCCCCCcccccccccccCCCCCCcccccceeeeEEEEEEe
Q 037461 119 QFSLAVINQIHSKYSVRKD-----TQHQFN----ARESDWGFTSFMPLGELYDPNRGYLVNDTLIVEAEVIVRR 183 (1077)
Q Consensus 119 ~f~l~Lln~~~~~~~~~~~-----~~h~F~----~~~~dwGf~~Fi~l~~L~~~~~gfl~nD~l~Ie~~V~V~~ 183 (1077)
+|+|.|+||.++.. .... ..+.|. ....+|||.+||++++|.+ .+|||+||+++|+|+|.|.+
T Consensus 120 ~~~l~lldq~~~~~-~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~-~~gyl~dD~l~I~~~V~V~~ 191 (192)
T 1ca9_A 120 KVTLMLLDQNNREH-VIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDLTG 191 (192)
T ss_dssp CEEEEECCTTSSCC-EEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETHHHHS-SCSSCBTTEEEEEEEECCTT
T ss_pred EEEEEEECCCCCce-eeEeeccCCchhhhcCCccCCCCCcChhheeEHHHhhh-ccCCEeCCEEEEEEEEEecC
Confidence 99999999987742 2111 123353 2456899999999999964 57999999999999998753
No 18
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A
Probab=99.81 E-value=8.9e-21 Score=192.95 Aligned_cols=130 Identities=22% Similarity=0.358 Sum_probs=100.6
Q ss_pred CCcEEEEEEccccccCC-----C--eeecCcEEEC--CeeEEEEEEeCCCC----CCceEEEEEecCCCCC-CCCceEEE
Q 037461 53 PSSRFTWRIENFSRLNT-----K--KHYSEIFIVG--GFKWRVLIFPKGNN----VDHLSMYLDVADSSSL-PYGWSRYA 118 (1077)
Q Consensus 53 ~~~~~tw~I~nfS~l~~-----~--~~~Sp~F~vG--G~~WrIll~P~Gn~----~~~lSiyL~~~~~~~~-~~~W~~~a 118 (1077)
..|+|+|+|+|||.+++ + .++||+|++| ||+|+|++||+|++ .+|||+||.+.+.+.. ..+|.+.|
T Consensus 3 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a 82 (160)
T 1lb6_A 3 CNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQG 82 (160)
T ss_dssp CCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCCS
T ss_pred cCcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeEEEEEEecCCCCCCCCCEEEEEEEEeecCCCccCCCceee
Confidence 46899999999998742 3 7999999999 99999999999963 4799999999865432 34799999
Q ss_pred EEEEEEEeecCCcc--eeeecc-----eeecCC-----CCCCCcccccccccccCCCCCCcccccceeeeEEEEEEee
Q 037461 119 QFSLAVINQIHSKY--SVRKDT-----QHQFNA-----RESDWGFTSFMPLGELYDPNRGYLVNDTLIVEAEVIVRRV 184 (1077)
Q Consensus 119 ~f~l~Lln~~~~~~--~~~~~~-----~h~F~~-----~~~dwGf~~Fi~l~~L~~~~~gfl~nD~l~Ie~~V~V~~~ 184 (1077)
+|+|.|+||.++.. ++.... .+.|.. ...+|||.+||++++|. ++|||+||+++|+|+|.|+.+
T Consensus 83 ~~~l~lldq~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~--~~~yl~dD~l~I~~~V~v~~~ 158 (160)
T 1lb6_A 83 TIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALR--QRTFIKDDTLLVRCEVSTRFD 158 (160)
T ss_dssp EEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGG--TSCCCBTTBEEEEEEEEC---
T ss_pred eEEEEEEcCCCccccccceEEeecCCcchhccCCcccCCCCCcCEeeEeEHHHhh--hCCCccCCEEEEEEEEEEeec
Confidence 99999999976531 111110 123432 12379999999999994 689999999999999999865
No 19
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A
Probab=99.81 E-value=1.3e-20 Score=193.18 Aligned_cols=129 Identities=21% Similarity=0.408 Sum_probs=103.9
Q ss_pred CCCcEEEEEEccccccCC-----C--eeecCcEE--ECCeeEEEEEEeCCCC---CCceEEEEEecCCCCCC-CCceEEE
Q 037461 52 PPSSRFTWRIENFSRLNT-----K--KHYSEIFI--VGGFKWRVLIFPKGNN---VDHLSMYLDVADSSSLP-YGWSRYA 118 (1077)
Q Consensus 52 ~~~~~~tw~I~nfS~l~~-----~--~~~Sp~F~--vGG~~WrIll~P~Gn~---~~~lSiyL~~~~~~~~~-~~W~~~a 118 (1077)
...++|+|+|+|||.+++ + .++||+|+ +|||+|+|++||+|++ .+|||+||.+.+....+ .+|.+.|
T Consensus 16 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~w~~~~ 95 (168)
T 1d00_A 16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ 95 (168)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred ccCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEEEEEeCCCCCCCCcEEEEEEEEecCCCCccCCCceEE
Confidence 367999999999998842 2 39999997 7899999999999974 48999999998765433 5899999
Q ss_pred EEEEEEEeecCCcceeeecc-----eeecC----CCCCCCcccccccccccCCCCCCcccccceeeeEEEEEE
Q 037461 119 QFSLAVINQIHSKYSVRKDT-----QHQFN----ARESDWGFTSFMPLGELYDPNRGYLVNDTLIVEAEVIVR 182 (1077)
Q Consensus 119 ~f~l~Lln~~~~~~~~~~~~-----~h~F~----~~~~dwGf~~Fi~l~~L~~~~~gfl~nD~l~Ie~~V~V~ 182 (1077)
+|+|.|+||.++. +..... .+.|. ....+|||.+||++++|.++ +|||+||+++|+|+|.|.
T Consensus 96 ~~~l~ll~q~~~~-~~~~~~~~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~-~gyl~dD~l~I~~~V~v~ 166 (168)
T 1d00_A 96 KVTLMLLDQNNRE-HVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAK-NSYVRDDAIFIKAIVDLT 166 (168)
T ss_dssp CEEEEECCTTSSC-CEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSS-SSSSBTTEEEEEEEECCT
T ss_pred EEEEEEECCCCCc-cceeccccCcchhhccCCCcCCCCCcCcceEeEHHHhccc-CCceeCCEEEEEEEEEec
Confidence 9999999998764 222211 23564 24578999999999999543 499999999999999874
No 20
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.79 E-value=2.3e-20 Score=195.48 Aligned_cols=129 Identities=21% Similarity=0.381 Sum_probs=105.1
Q ss_pred CCcEEEEEEccccccC-----CC--eeecCcEEEC--CeeEEEEEEeCCCC---CCceEEEEEecCCCCC-CCCceEEEE
Q 037461 53 PSSRFTWRIENFSRLN-----TK--KHYSEIFIVG--GFKWRVLIFPKGNN---VDHLSMYLDVADSSSL-PYGWSRYAQ 119 (1077)
Q Consensus 53 ~~~~~tw~I~nfS~l~-----~~--~~~Sp~F~vG--G~~WrIll~P~Gn~---~~~lSiyL~~~~~~~~-~~~W~~~a~ 119 (1077)
..|+|+|+|+|||.++ ++ .++||+|++| ||+|+|.+||+|++ .+|||+||.+.+++.. ..+|.+.|+
T Consensus 38 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a~ 117 (192)
T 2gkw_A 38 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQK 117 (192)
T ss_dssp CSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCCC
T ss_pred cCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEEEEEeCCCCCCCCCEEEEEEEEecCCCCccCCCcEEEE
Confidence 6799999999999884 23 5999999999 99999999999974 4799999999865442 347999999
Q ss_pred EEEEEEeecCCcceeeec-----ceeecCC----CCCCCcccccccccccCCCCCCcccccceeeeEEEEEEe
Q 037461 120 FSLAVINQIHSKYSVRKD-----TQHQFNA----RESDWGFTSFMPLGELYDPNRGYLVNDTLIVEAEVIVRR 183 (1077)
Q Consensus 120 f~l~Lln~~~~~~~~~~~-----~~h~F~~----~~~dwGf~~Fi~l~~L~~~~~gfl~nD~l~Ie~~V~V~~ 183 (1077)
|+|.|+||.++..++... ..+.|.. ...+|||.+||++++|. ++|||+||+++|+|+|.|.+
T Consensus 118 ~~l~lldq~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~--~~gyl~dD~l~I~~~V~v~~ 188 (192)
T 2gkw_A 118 VTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDTSD 188 (192)
T ss_dssp EEEEECCCSTTCCCEEEEECCCTTCTTSSCCSSSBCCCEEEEEEEEHHHHH--HTTSCBTTEEEEEEEECCTT
T ss_pred EEEEEECCCCCccceEEEEecCCCcccccCCCCCCcCCCChHHEeEHHHhC--cCCCeeCCEEEEEEEEEcCC
Confidence 999999998775443322 1256753 24689999999999994 46999999999999997643
No 21
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.77 E-value=3.3e-19 Score=200.88 Aligned_cols=126 Identities=29% Similarity=0.446 Sum_probs=106.5
Q ss_pred CcEEEEEEccccccC---CCeeecCcEEECCe---eEEEEEEeCCC---CCCceEEEEEecCCCCCCCCceEEEEEEEEE
Q 037461 54 SSRFTWRIENFSRLN---TKKHYSEIFIVGGF---KWRVLIFPKGN---NVDHLSMYLDVADSSSLPYGWSRYAQFSLAV 124 (1077)
Q Consensus 54 ~~~~tw~I~nfS~l~---~~~~~Sp~F~vGG~---~WrIll~P~Gn---~~~~lSiyL~~~~~~~~~~~W~~~a~f~l~L 124 (1077)
.++|+|+|.|||.++ ++.++||+|.+||| +|+|.+||+|+ +.+++|+||.|... .+|.+.|+|+|.|
T Consensus 6 ~~~~~w~I~nfs~~~~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~~~~~~~lslyL~~~~~----~~~~v~a~~~~~l 81 (312)
T 3hqi_A 6 KFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKFKFSI 81 (312)
T ss_dssp EEEEEEEETTGGGCCCCTTCCEECCCBCC--CCCCEEEEEEETTCCC--CTTEEEEEEEEEEC----CC-CEEEEEEEEE
T ss_pred EEEEEEEEcCcchhhhcCCCeEeeCCcccCCCCCceEEEEEECCCCCccCCCcEEEEEEEcCC----CCCcEEEEEEEEE
Confidence 578999999999985 67899999999996 99999999996 34899999999854 3689999999999
Q ss_pred EeecCCcceeee-cceeecCCCCCCCcccccccccccCCCCCCcccccceeeeEEEEEEee
Q 037461 125 INQIHSKYSVRK-DTQHQFNARESDWGFTSFMPLGELYDPNRGYLVNDTLIVEAEVIVRRV 184 (1077)
Q Consensus 125 ln~~~~~~~~~~-~~~h~F~~~~~dwGf~~Fi~l~~L~~~~~gfl~nD~l~Ie~~V~V~~~ 184 (1077)
+|++++...... ...|+|+. ..+|||.+||+|++|.++.+|||+||+++|+|+|+|+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~ 141 (312)
T 3hqi_A 82 LNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQD 141 (312)
T ss_dssp ECTTSCEEEEEECSSCEEECT-TCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEE
T ss_pred EeCCCCcccccccCCceeCCC-CCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEec
Confidence 999876544332 46788875 468999999999999888889999999999999999975
No 22
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=99.77 E-value=1.3e-19 Score=194.69 Aligned_cols=130 Identities=20% Similarity=0.370 Sum_probs=105.9
Q ss_pred CCCcEEEEEEccccccCC-------CeeecCcEEEC--CeeEEEEEEeCCCC---CCceEEEEEecCCCCC-CCCceEEE
Q 037461 52 PPSSRFTWRIENFSRLNT-------KKHYSEIFIVG--GFKWRVLIFPKGNN---VDHLSMYLDVADSSSL-PYGWSRYA 118 (1077)
Q Consensus 52 ~~~~~~tw~I~nfS~l~~-------~~~~Sp~F~vG--G~~WrIll~P~Gn~---~~~lSiyL~~~~~~~~-~~~W~~~a 118 (1077)
...|+|+|+|+|||.+++ ..++||+|++| ||+|+|.+||+|++ .+|||+||.+.++... ...|.+.|
T Consensus 73 ~~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~Wp~~a 152 (228)
T 1flk_A 73 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ 152 (228)
T ss_dssp CSSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCGGGTTTEEEEEECCBCCTTTTSSCSSCCC
T ss_pred CcCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEEEEEcCCCCCCCCCEEEEEEEEecCCccccCCCcEEE
Confidence 367999999999998742 27999999999 99999999999974 4799999999865443 34899999
Q ss_pred EEEEEEEeecCCcceeeec-----ceeecC----CCCCCCcccccccccccCCCCCCcccccceeeeEEEEEEe
Q 037461 119 QFSLAVINQIHSKYSVRKD-----TQHQFN----ARESDWGFTSFMPLGELYDPNRGYLVNDTLIVEAEVIVRR 183 (1077)
Q Consensus 119 ~f~l~Lln~~~~~~~~~~~-----~~h~F~----~~~~dwGf~~Fi~l~~L~~~~~gfl~nD~l~Ie~~V~V~~ 183 (1077)
+|+|+|+||.++..++... ..+.|. ....+|||.+||++++|. ++|||+||+++|+|.|.|.+
T Consensus 153 ~~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~--~~gyL~dD~l~I~~~V~v~~ 224 (228)
T 1flk_A 153 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDTSD 224 (228)
T ss_dssp CEEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBCCCCSEEEEEEHHHHS--SSTTCCSSEEEEEEECCCTT
T ss_pred EEEEEEEcCCCCccceeeeecCCCccccccCCccCCCCCcCHHHeeEHHHHc--cCCCccCCEEEEEEEEEccc
Confidence 9999999998775443321 233464 234689999999999994 48999999999999998754
No 23
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=99.42 E-value=1.9e-14 Score=139.74 Aligned_cols=70 Identities=30% Similarity=0.532 Sum_probs=65.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcccceeEEecchhHHhhcCCcceecccCCCC--CcEEEEecccccceee
Q 037461 537 DIAEHLRERLKKEQEEKEHKKKEKAEAHLYTVIKVARDDDLLEQIGKDIYFDLVDHDK--VRSFRIQKQIPFNLFK 610 (1077)
Q Consensus 537 ~ip~~l~~~~~~e~~~~e~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~fdl~~~~~--~~~~~~~~~~~~~~~~ 610 (1077)
+||+||..|+++|+++.|+++||++|+|||++|+|+|+++|..|+| |||+|++. .++|||+|+++|.+|+
T Consensus 1 ~iP~hL~~rl~eE~~~~e~rrKEr~EahlY~~vkv~t~~~f~~~~g----fDL~~~~~~~~~~~rv~k~~~~~~~~ 72 (130)
T 2kvr_A 1 GSPQQLVERLQEEKRIEAQKRKERQEAHLYMQVQIVAEDQFCGHQG----NDMYDEEKVKYTVFKVLKNSSLAEFV 72 (130)
T ss_dssp --CTHHHHHHHHHHTTHHHHTCCCCSSTTCCEEEEECCSTTTTCCC----CSSCCSSSCSCEEEECCTTSBHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHhceeEEEEecHHHHHhccC----ccCcCCccCCcceEEEeccCcHHHHH
Confidence 5899999999999999999999999999999999999999999999 99998874 4689999999999986
No 24
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*
Probab=98.49 E-value=1.7e-07 Score=112.42 Aligned_cols=121 Identities=18% Similarity=0.399 Sum_probs=90.5
Q ss_pred cEEEEEEcccccc---CCCeeecCcEEEC-CeeEEEEEEeCCCCCCceEEEEEecCCCCC-CCCceEE-EEEEEEEEeec
Q 037461 55 SRFTWRIENFSRL---NTKKHYSEIFIVG-GFKWRVLIFPKGNNVDHLSMYLDVADSSSL-PYGWSRY-AQFSLAVINQI 128 (1077)
Q Consensus 55 ~~~tw~I~nfS~l---~~~~~~Sp~F~vG-G~~WrIll~P~Gn~~~~lSiyL~~~~~~~~-~~~W~~~-a~f~l~Lln~~ 128 (1077)
-.+.|+|.||+++ .+..++||+|+.. ||.++|.++|+| ..++|+|+.+..++.. -..|.|. -++++.|++|.
T Consensus 406 P~~vw~i~nfs~~l~~~~~~~~Sp~Fys~~GY~~~v~l~~~~--~~~~~~~~~l~sG~~D~~L~WP~~~~q~t~~llDQ~ 483 (592)
T 4gwm_A 406 PHHIWHIRNFTQFIGSPNGTLYSPPFYSSKGYAFQIYLNLAH--VTNAGIYFHLISGANDDQLQWPCPWQQATMTLLDQN 483 (592)
T ss_dssp CSEEEEECSCGGGTTCTTCEEECCCEECTTSCEEEEEEECCS--SSEEEEEEEEECCTTGGGSCSSCCSEEEEEEECCCC
T ss_pred CCCceeecCHHHhhcCCCCceeCCCccCCCCeEEEEEEecCC--CceEEEEEEEecCCCCCCccCCCCCCEEEEEEeCCC
Confidence 3589999999997 2468999999975 999999999865 4689999999876442 3489984 68999999996
Q ss_pred CCcceeeecceeecC--------------------------------CCCCCCcccccccccccCCCCCCcccccceeee
Q 037461 129 HSKYSVRKDTQHQFN--------------------------------ARESDWGFTSFMPLGELYDPNRGYLVNDTLIVE 176 (1077)
Q Consensus 129 ~~~~~~~~~~~h~F~--------------------------------~~~~dwGf~~Fi~l~~L~~~~~gfl~nD~l~Ie 176 (1077)
..... .......|+ ....+|||+.|++++.| .++.||+||++.|.
T Consensus 484 pd~~~-rms~~~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l--~~r~fiK~d~~~i~ 560 (592)
T 4gwm_A 484 PDIRQ-RMSNQRSITTDPFMTTDNGNYFWDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERL--KSRDFIKGDDVYIL 560 (592)
T ss_dssp SSGGG-CCCEEEEEECCTTCBCTTSCBTTSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHH--TSTTSSBTTBEEEE
T ss_pred CChHh-cCceeEEEEcCCcccCcccccccCCcccccccccccCCcceeecCCcCccccccHHHH--hhcCcccCCeEEEE
Confidence 43321 001111111 11235899999999999 46789999999999
Q ss_pred EEEE
Q 037461 177 AEVI 180 (1077)
Q Consensus 177 ~~V~ 180 (1077)
+.|.
T Consensus 561 ~~~e 564 (592)
T 4gwm_A 561 LTVE 564 (592)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8884
No 25
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=97.41 E-value=0.013 Score=70.14 Aligned_cols=222 Identities=15% Similarity=0.201 Sum_probs=145.9
Q ss_pred eEEEecccCCHHHHHHHHHHHcCCCCCCcEEEeeccccCCCCCCCccccc----CccchHHhhhccCCCcceeeEEEecc
Q 037461 777 FCLEMSKLYTYDDVVERVAQQLGLDDPSKIRLTSHNCYSQQPKPQPIKYR----GVDHLSDMLIHYNQTSDVLYYEVLDI 852 (1077)
Q Consensus 777 f~~~ls~~~~Y~~~~~~v~~~l~~~~p~~lr~~~~~~~~~~~~~~~~~~~----~~~~l~~~l~~~~~~~~~l~YevL~i 852 (1077)
-.+.+-++++..+|.+.||+.+|+ +|..+|||....-.| ...+|-... ...++.++.. ++..-.||=|+++-
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~-~~~~~RlW~~~~RqN-~T~Rp~~~~~~~~~~~~~~~~~~--~~~~~~lflE~~~~ 113 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGF-PQDQIRLWPMQARSN-GTKRPAMLDNEADGNKTMIELSD--NENPWTIFLETVDP 113 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTS-CGGGEEEEEEEECTT-SCEEECCCCHHHHTTSBHHHHHT--SCSSEEEEEEECCH
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCc-CcccEEEEEEEcCCC-CccCCccCCccccHHHHHHHHhc--cCCceEEEEEeccc
Confidence 357889999999999999999998 599999998643222 211222111 1124444433 33446788888642
Q ss_pred -------Chhhhcc--cceEEEEEEcCCCCeE-EEEEEEcCCCCCHHHHHHHHhhccccCCCCccEEEEEEec-cEEEEe
Q 037461 853 -------PLPELQC--LKTLKVAFHHATKDEV-SVHTIRLPKQSTVGDVINDLKTKVELSQPDAELRLLEVFY-HKIYKI 921 (1077)
Q Consensus 853 -------~l~elE~--~k~~kv~w~~~~~~~~-~~~~~~v~k~~tv~dll~~l~~~~~~~~~~~~lRl~ev~~-~ki~~~ 921 (1077)
++...-. .-.+=+.+..+..+.. ..=.++|+++.+|++|+..+.+.+++++++ +|+|||-.. +.+..+
T Consensus 114 ~~~~~~~~l~~~~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt-~l~lyEEi~~~~ie~l 192 (530)
T 2ylm_A 114 ELAASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDT-SLILYEEVKPNLTERI 192 (530)
T ss_dssp HHHTTTCCCCCCCTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTC-CEEEEEEEETTEEEEC
T ss_pred ccCCccccCCCCCCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCC-ceEEEEecCCCceeEc
Confidence 2222222 2355556667765544 344689999999999999999999997644 799998654 667666
Q ss_pred cCCccccc----ccccccceEEeeecchhhhcCC-CC---------CeEEEEEEeeccCccccccccccCcceEEEeccC
Q 037461 922 FPLNEKIE----NINDQYWTLRAEEIPEEEKNLG-PH---------DRLIHVYHFTKETAQNQMQIQNFGEPFFLVIHEG 987 (1077)
Q Consensus 922 ~~~~~~i~----~i~~~~~~~~~E~iP~~e~~~~-~~---------~~~i~v~hf~k~~~~~h~~~~~fGiPF~~~i~~~ 987 (1077)
-..+.++. +|.+ +..+..|..+.++.+.. ++ .+ |. .||... ...+ ..+|.+.+-..
T Consensus 193 ~~~~~t~~~~~~eL~~-GdII~fQ~~~~~~~~~~y~~v~~yy~~l~nr-v~-V~f~~~-~~~~------~~~F~l~Ls~~ 262 (530)
T 2ylm_A 193 QDYDVSLDKALDELMD-GDIIVFQKDDPENDNSELPTAKEYFRDLYHR-VD-VIFCDK-TIPN------DPGFVVTLSNR 262 (530)
T ss_dssp CCSSSBHHHHSTTCCT-TEEEEEEECCGGGGGSSSCSHHHHHHHHHHE-EE-EEEEET-TSTT------CCCEEEEEETT
T ss_pred ccccccHHHHHhcccC-CCEEEEEecCCccccccCCCHHHHHHHHhcc-eE-EEEeec-CCCC------CCCeEEEECCC
Confidence 53555444 3444 56888887655321111 11 12 22 345432 1122 67899999999
Q ss_pred CcHHHHHHHHHHHhCCCcccccceEEEEE
Q 037461 988 ETLQEIKVRIQRKLQVPDEEFAKWKFAFL 1016 (1077)
Q Consensus 988 E~~~~~k~ri~~~~~~~~~~f~k~k~a~~ 1016 (1077)
-++.++-+++.+++|+.. .+++|+-+
T Consensus 263 ~~Y~~la~~va~~l~~dP---~~lRf~~~ 288 (530)
T 2ylm_A 263 MNYFQVAKTVAQRLNTDP---MLLQFFKS 288 (530)
T ss_dssp CCHHHHHHHHHHHHTSCG---GGEEEECC
T ss_pred CCHHHHHHHHHHHhCCCc---hhEEEEec
Confidence 999999999999999954 45788766
No 26
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=96.18 E-value=0.044 Score=56.75 Aligned_cols=191 Identities=13% Similarity=0.104 Sum_probs=102.9
Q ss_pred cccCCccccceeecccCCcccchhhhhHHHhhhHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccchhhhh
Q 037461 188 WSYDSKKETGYVGLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDSSVATKELTK 267 (1077)
Q Consensus 188 ~~~dsk~~~g~vGL~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~l~~~Lq~Lf~~l~~s~~~v~~~~l~~ 267 (1077)
.+|+.....|.+=|+-.-|.||+||++=+|=+.... ++.++.++..++. ..|..
T Consensus 3 ~~f~~~~~nG~~vLkq~dNNCwVNaa~l~LQ~~~~~----------------------~~~aw~~f~~Gd~----~~fV~ 56 (211)
T 3mp2_A 3 PPFKTTNLNGKIILKQGDNNCWINACCYQLQAFDFF----------------------NNEAWEKFKKGDV----MDFVN 56 (211)
T ss_dssp CCCCEEEETTEEEECCCTTCHHHHHHHHHHTTCTTC----------------------CCHHHHHHTTTCC----HHHHH
T ss_pred CCCcceeECCEEEEEccCCCcHHHHHHHHHHhcChh----------------------HHHHHHHHhCCCh----HHHHH
Confidence 356666777888888888999999997665333321 4444444444332 22222
Q ss_pred hcc-CCcccccccccHHHHHHHHHHHHHHHhcCCccccccccccceEEeeEEEeeeeeeecceeeeeeeeeeeecCCCCH
Q 037461 268 SFG-WDTYDSFMQHDVQELNRVLSEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDV 346 (1077)
Q Consensus 268 s~~-~~~~~~~~QqDa~Efl~~Lld~Le~e~~~~~~~~~i~~lF~G~~~~~i~C~~C~~~s~~~E~f~~L~L~v~~~~sL 346 (1077)
.+= ......++--||+++++.|+.. +-...+...+.|. |+. +.+.+...-..+....
T Consensus 57 ~~Ya~~~~~~G~~gDa~~~L~~Ll~~----------------~~~a~~v~~~~C~-Cg~---~~~~~~G~v~~~~~~~-- 114 (211)
T 3mp2_A 57 LCYAATTLARGHSGDAEYLLELMLND----------------YSTAKIVLAAKCG-CGE---KEIVLERAVFKLTPLK-- 114 (211)
T ss_dssp HHHHHHTCCTTSCCCHHHHHHHHHTT----------------CCCEEEEEEEEET-TEE---EEEEEEESEEESCCBS--
T ss_pred HHHHHcCCCCCCCcCHHHHHHHHHHh----------------hccceEEEEEEEc-CCC---ceEEEeeeEEEEEeee--
Confidence 110 0133456688999999999722 1123455567887 876 3333433333332211
Q ss_pred HHHHhhccceEEecCCCcc-cccccCeeeceeeEEeccCCCeEEEEEeeEEEecccCeeeeccceEeeCcccccccccCC
Q 037461 347 YASFDKYVEVERLEGDNKY-HAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRENGK 425 (1077)
Q Consensus 347 ~esL~~~~~~E~l~g~n~y-~C~~c~~~~a~k~~~i~~lP~vLiI~LkRF~~d~~~~~~~Ki~~~v~FP~~LdL~~~~~~ 425 (1077)
.+ -.| .|..|+..... ++.+.+-.++|- ++. .|..++.+ +.
T Consensus 115 -------------~~-~~~g~C~~c~~~~~~---~v~~v~Gt~i~~----------------~~~--~~~~v~~~---~~ 156 (211)
T 3mp2_A 115 -------------ES-FNYGVCGDCMQVNTC---RFLSVEGSGVFV----------------HDI--LSKQTPEA---MF 156 (211)
T ss_dssp -------------SC-EEEEECTTTCCEEEE---EEEEEEEEEEEE----------------EEE--ECSCCCGG---GB
T ss_pred -------------cC-CCceECCCCCceeEE---EEEEeeeeEEEE----------------cCC--CCcccccc---cc
Confidence 01 124 68888643221 122222211111 110 23333331 11
Q ss_pred CCCCCcCcCCCccEEEEEEEEeeeccCCceEEEEEEeCCCCCEEEEeCceeeEec
Q 037461 426 YLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKED 480 (1077)
Q Consensus 426 yl~~~~~~~~~~~Y~L~gVVvH~Gs~~~GHY~ayvr~~~~~~Wy~fnD~~Vt~vs 480 (1077)
.+. + .+-++.+|+.++|||+.+.... + +.+|-..+.+++
T Consensus 157 ~v~-------~-----~~~~vF~G~~~~GHY~~~~~~~--~--~~vDG~~~~~~~ 195 (211)
T 3mp2_A 157 VVK-------P-----VMHAVYTGTTQNGHYMVDDIEH--G--YCVDGMGIKPLK 195 (211)
T ss_dssp SSC-------C-----SEEEEEESCTTTCEEEEEETTT--T--EEEETTEEECCC
T ss_pred eee-------c-----eeEEEEEcCCCCceEEEEeccc--c--eEEeCCceeEcc
Confidence 111 1 2345569999999999997652 3 999999998885
No 27
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=94.92 E-value=0.24 Score=49.92 Aligned_cols=104 Identities=21% Similarity=0.279 Sum_probs=74.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhccccCCCCccEEEEEEeccEEEEecCCccccccccc-ccceEEeeecchhhhcCCCCCe
Q 037461 877 VHTIRLPKQSTVGDVINDLKTKVELSQPDAELRLLEVFYHKIYKIFPLNEKIENIND-QYWTLRAEEIPEEEKNLGPHDR 955 (1077)
Q Consensus 877 ~~~~~v~k~~tv~dll~~l~~~~~~~~~~~~lRl~ev~~~ki~~~~~~~~~i~~i~~-~~~~~~~E~iP~~e~~~~~~~~ 955 (1077)
.+.+-|+.+.||.+|.+.++.+.+++.+. .||+ ++|| .+..+..+.+.+- ...++.+-. . -.+.+
T Consensus 32 ~~~l~v~~~~tV~~lK~~I~~~~gip~~~--QrL~--~~g~---~L~d~~tL~~~~i~~~~~l~l~~-~------~~gg~ 97 (172)
T 3u30_A 32 TITLEVEPSDTIENVKAKIQDKEGIPPDQ--QRLI--FAGK---QLEDGRTLSDYNIQKESTLHLVL-R------LRGGM 97 (172)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHCCCGGG--EEEE--ETTE---ECCTTCBTGGGTCCTTCEEEEEE-C------CCCCE
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcChHH--EEEE--ECCc---cccccCCHhHcCCcccceeeeee-c------ccccc
Confidence 46789999999999999999998886554 5665 4664 4677777777531 122343311 1 12345
Q ss_pred EEEEEEeeccCccccccccccCcceEEEeccCCcHHHHHHHHHHHhCCCccc
Q 037461 956 LIHVYHFTKETAQNQMQIQNFGEPFFLVIHEGETLQEIKVRIQRKLQVPDEE 1007 (1077)
Q Consensus 956 ~i~v~hf~k~~~~~h~~~~~fGiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~ 1007 (1077)
.|.| |..+ |-.|.+.+.+.+|..++|++|+.+.|++...
T Consensus 98 ~i~V----k~~~---------g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~ 136 (172)
T 3u30_A 98 QIFV----KTLT---------GKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 136 (172)
T ss_dssp EEEE----EESS---------CCEEEEEECTTCBHHHHHHHHHHHHCCCGGG
T ss_pred ccee----eccc---------CcceeEEecCCCCHHHHHHHHHHHhCCCcee
Confidence 5544 3233 7788999999999999999999999998754
No 28
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=94.70 E-value=0.33 Score=47.47 Aligned_cols=119 Identities=19% Similarity=0.250 Sum_probs=79.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhccccCCCCccEEEEEEeccEEEEecCCccccccccc-ccceEEeeecchhhhcCCCCCe
Q 037461 877 VHTIRLPKQSTVGDVINDLKTKVELSQPDAELRLLEVFYHKIYKIFPLNEKIENIND-QYWTLRAEEIPEEEKNLGPHDR 955 (1077)
Q Consensus 877 ~~~~~v~k~~tv~dll~~l~~~~~~~~~~~~lRl~ev~~~ki~~~~~~~~~i~~i~~-~~~~~~~E~iP~~e~~~~~~~~ 955 (1077)
.+.+-++.+.||.||.+.+..+.+++.+. .||. ++|| .+..+.++.+.+- ...++.+..-+ .+.+
T Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gip~~~--q~L~--~~g~---~L~d~~tL~~~~i~~~~~l~l~~~~-------~~~~ 77 (152)
T 3b08_A 12 TITLEVEPSDTIENVKAKIQDKEGIPPDQ--QRLI--FAGK---QLEDGRTLSDYNIQKESTLHLVLRL-------RGGM 77 (152)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHHCCCGGG--EEEE--ETTE---ECCTTSBTGGGTCCTTCEEEEEECC-------TTCE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCcChHH--eEEE--ECCe---ECcCcccHHHhccCCCCeeEEEeec-------cccc
Confidence 45788999999999999999999887554 5554 3565 4666777766531 12344432211 2334
Q ss_pred EEEEEEeeccCccccccccccCcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCccc
Q 037461 956 LIHVYHFTKETAQNQMQIQNFGEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDI 1029 (1077)
Q Consensus 956 ~i~v~hf~k~~~~~h~~~~~fGiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~~ 1029 (1077)
.|.|- ..+ |-.|.+.+.+..|..++|++|+++.|++.. +.++ +.. ++.|+|+..
T Consensus 78 ~i~Vk----~~~---------g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~---~qrL--~~~--g~~L~d~~t 131 (152)
T 3b08_A 78 QIFVK----TLT---------GKTITLEVEPSDTIENVKAKIQDKEGIPPD---QQRL--IFA--GKQLEDGRT 131 (152)
T ss_dssp EEEEE----ESS---------SCEEEEEECTTCBHHHHHHHHHHHHCCCGG---GEEE--EET--TEECCTTSB
T ss_pred ceeee----ecC---------CCEEEEEeCCCCcHHHHHHHHHHHhCcChh---hEEE--EEC--CEECCCCCC
Confidence 55543 222 778899999999999999999999999854 3443 333 345666543
No 29
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=94.23 E-value=0.47 Score=52.22 Aligned_cols=83 Identities=19% Similarity=0.220 Sum_probs=49.4
Q ss_pred ccCCccccceeecccCCcccchhhhhHHHhhhHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccchhhhhh
Q 037461 189 SYDSKKETGYVGLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDSSVATKELTKS 268 (1077)
Q Consensus 189 ~~dsk~~~g~vGL~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~l~~~Lq~Lf~~l~~s~~~v~~~~l~~s 268 (1077)
.|+.....|++=|+=.-|.||+||++=+|=+... .. -.-+|+.++..+..++..---.-+..+
T Consensus 93 ~w~~~~~~G~~vLkq~dNNCwVNaa~l~LQ~~~~--------~F---------~~~~l~~aw~~f~~Gd~~~FVa~~Ya~ 155 (315)
T 2fe8_A 93 KWKFPQVGGLTSIKWADNNCYLSSVLLALQQLEV--------KF---------NAPALQEAYYRARAGDAANFCALILAY 155 (315)
T ss_dssp TSCCCEETTEECCCCCTTTHHHHHHHHHHHTSCC--------CB---------SSHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCceEEECCEEEEeecCCccHHHHHHHHHHhcCC--------cc---------CCHHHHHHHHHHhCCChHHHHHHHHHh
Confidence 3445566677888888899999998766532211 00 013677777777665542111111111
Q ss_pred ccCCcccccccccHHHHHHHHHH
Q 037461 269 FGWDTYDSFMQHDVQELNRVLSE 291 (1077)
Q Consensus 269 ~~~~~~~~~~QqDa~Efl~~Lld 291 (1077)
.....++-.||++++..|+.
T Consensus 156 ---~~~~~G~~gDa~~~L~~Ll~ 175 (315)
T 2fe8_A 156 ---SNKTVGELGDVRETMTHLLQ 175 (315)
T ss_dssp ---TTCCTTSCCCHHHHHHHHHT
T ss_pred ---cCCCCCCCccHHHHHHHHHh
Confidence 12335678899999999943
No 30
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=92.96 E-value=0.66 Score=46.63 Aligned_cols=126 Identities=15% Similarity=0.260 Sum_probs=94.0
Q ss_pred CCCCcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCccccccccccccccccc
Q 037461 646 KTKEDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQ 725 (1077)
Q Consensus 646 ~~~~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~e 725 (1077)
.....+-||+|.++-.+ + .+-|..+.+|.+|...|.+..|+|++..-.+|. + ..++...++....
T Consensus 16 ~~~~~m~i~Vk~~~g~~--~----~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~------g---~~L~d~~tL~~~~ 80 (172)
T 3u30_A 16 PRGSHMQIFVKTLTGKT--I----TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYN 80 (172)
T ss_dssp ---CCEEEEEEETTTEE--E----EEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET------T---EECCTTCBTGGGT
T ss_pred CCCCcEEEEEEeCCCCE--E----EEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC------C---ccccccCCHhHcC
Confidence 34566899999876432 2 246889999999999999999999988766663 2 2345678999999
Q ss_pred CCCCCEEEEEecCCCCCCCCCCCCCHHHHHHHHhcceEEEEEecCCCCCCCeEEEecccCCHHHHHHHHHHHcCCCCCCc
Q 037461 726 LEDGDIICFQKSTPIEGVGKFRYPEVPSFLDYVHNRQVVHFRSLEKPKEDDFCLEMSKLYTYDDVVERVAQQLGLDDPSK 805 (1077)
Q Consensus 726 l~~GdIi~fQ~~~~~~~~~~~~~~~~~~yy~~L~nr~~v~f~~~~~~~~~~f~~~ls~~~~Y~~~~~~v~~~l~~~~p~~ 805 (1077)
|.+|+.|..-..... .+.+.++.. ....|.+.++...|=.+|-++|+++.|+ +|+.
T Consensus 81 i~~~~~l~l~~~~~g--------------------g~~i~Vk~~---~g~~~~l~v~~~~tV~~lK~~I~~~~gi-p~~~ 136 (172)
T 3u30_A 81 IQKESTLHLVLRLRG--------------------GMQIFVKTL---TGKTITLEVEPSDTIENVKAKIQDKEGI-PPDQ 136 (172)
T ss_dssp CCTTCEEEEEECCCC--------------------CEEEEEEES---SCCEEEEEECTTCBHHHHHHHHHHHHCC-CGGG
T ss_pred Ccccceeeeeecccc--------------------cccceeecc---cCcceeEEecCCCCHHHHHHHHHHHhCC-Ccee
Confidence 999999887654221 234544443 2346999999999999999999999997 5888
Q ss_pred EEEee
Q 037461 806 IRLTS 810 (1077)
Q Consensus 806 lr~~~ 810 (1077)
.||.-
T Consensus 137 q~L~~ 141 (172)
T 3u30_A 137 QRLIF 141 (172)
T ss_dssp CCEEE
T ss_pred EEEEE
Confidence 88765
No 31
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=92.76 E-value=0.82 Score=44.52 Aligned_cols=120 Identities=16% Similarity=0.268 Sum_probs=89.8
Q ss_pred EEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCCCE
Q 037461 652 LLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDI 731 (1077)
Q Consensus 652 ~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~GdI 731 (1077)
.||+|..+-. ++ .+-|+.+.+|.+|...|.+..|+|++..-.+|. + ..++...++....+.+|+.
T Consensus 2 ~i~vk~~~g~--~~----~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~------g---~~L~d~~tL~~~~i~~~~~ 66 (152)
T 3b08_A 2 QIFVKTLTGK--TI----TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNIQKEST 66 (152)
T ss_dssp EEEEEETTSC--EE----EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET------T---EECCTTSBTGGGTCCTTCE
T ss_pred EEEEEeCCCC--EE----EEEECCCCCHHHHHHHHHHHHCcChHHeEEEEC------C---eECcCcccHHHhccCCCCe
Confidence 3566655432 22 345788999999999999999999887766663 2 1245568899999999999
Q ss_pred EEEEecCCCCCCCCCCCCCHHHHHHHHhcceEEEEEecCCCCCCCeEEEecccCCHHHHHHHHHHHcCCCCCCcEEEee
Q 037461 732 ICFQKSTPIEGVGKFRYPEVPSFLDYVHNRQVVHFRSLEKPKEDDFCLEMSKLYTYDDVVERVAQQLGLDDPSKIRLTS 810 (1077)
Q Consensus 732 i~fQ~~~~~~~~~~~~~~~~~~yy~~L~nr~~v~f~~~~~~~~~~f~~~ls~~~~Y~~~~~~v~~~l~~~~p~~lr~~~ 810 (1077)
|..-..... .+.|.++... ...|.+.++...|-.+|-++|++..|+ +|...||.-
T Consensus 67 l~l~~~~~~--------------------~~~i~Vk~~~---g~~~~~~v~~~~tv~~lK~~i~~~~gi-~~~~qrL~~ 121 (152)
T 3b08_A 67 LHLVLRLRG--------------------GMQIFVKTLT---GKTITLEVEPSDTIENVKAKIQDKEGI-PPDQQRLIF 121 (152)
T ss_dssp EEEEECCTT--------------------CEEEEEEESS---SCEEEEEECTTCBHHHHHHHHHHHHCC-CGGGEEEEE
T ss_pred eEEEeeccc--------------------ccceeeeecC---CCEEEEEeCCCCcHHHHHHHHHHHhCc-ChhhEEEEE
Confidence 888654321 2456555442 246999999999999999999999997 589999875
No 32
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=92.62 E-value=0.66 Score=45.89 Aligned_cols=121 Identities=13% Similarity=0.061 Sum_probs=79.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhccccCCCCccEEEEEEe-ccEEEEecCCccccccccc-ccceEEeeecchhhhcCCCCC
Q 037461 877 VHTIRLPKQSTVGDVINDLKTKVELSQPDAELRLLEVF-YHKIYKIFPLNEKIENIND-QYWTLRAEEIPEEEKNLGPHD 954 (1077)
Q Consensus 877 ~~~~~v~k~~tv~dll~~l~~~~~~~~~~~~lRl~ev~-~~ki~~~~~~~~~i~~i~~-~~~~~~~E~iP~~e~~~~~~~ 954 (1077)
.+.+-|+.+.||.+|-+.++.+.+++.+. .||.- + +|+ .+..+.++.+.+= ...++..-.-+ .++.
T Consensus 14 ~~~l~v~~~~tV~~lK~~I~~~~gip~~~--QrL~~-~~~g~---~L~d~~tL~~y~i~~~~~l~l~~~~------~~~~ 81 (159)
T 3rt3_B 14 EFQVSLSSSMSVSELKAQITQKIGVHAFQ--QRLAV-HPSGV---ALQDRVPLASQGLGPGSTVLLVVDK------SDEP 81 (159)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHCCCGGG--EEEEE-ETTCC---BCCTTSCGGGGTCCTTCEEEEEECC------CCCC
T ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCHHH--EEEEE-cCCCC---CCCCCCCHHHcCCCCCCEEEEEccC------CCCc
Confidence 46789999999999999999999987655 45542 3 454 4677777776531 12234332210 1233
Q ss_pred eEEEEEEeeccCccccccccccCcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCccc
Q 037461 955 RLIHVYHFTKETAQNQMQIQNFGEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDI 1029 (1077)
Q Consensus 955 ~~i~v~hf~k~~~~~h~~~~~fGiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~~ 1029 (1077)
+-|.| |..+ |--|.+.+.+.+|..++|++|+.+.|+|... .++ +..+ +-|+|+..
T Consensus 82 m~i~v----k~~~---------g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~---q~L--~~~G--~~L~d~~t 136 (159)
T 3rt3_B 82 LSILV----RNNK---------GRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL---FWL--TFEG--KPLEDQLP 136 (159)
T ss_dssp EEEEE----ECTT---------SCEEEEEECTTSBHHHHHHHHHHHHTCCGGG---EEE--EETT--EECCTTSB
T ss_pred EEEEE----ECCC---------CCEEEEEeCCCCCHHHHHHHHHHHHCCCHHH---EEE--EECC--eecCCCCC
Confidence 44444 3333 7778899999999999999999999998643 443 3333 44666543
No 33
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=92.38 E-value=1.2 Score=43.99 Aligned_cols=122 Identities=14% Similarity=0.103 Sum_probs=92.3
Q ss_pred EEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEE-EEEeecCCcccccccccccccccccCCCC
Q 037461 651 ILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDL-YEEIKFEPSVMCEPIEKRCTFRASQLEDG 729 (1077)
Q Consensus 651 ~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l-yEEik~~p~~~ie~i~~~~tf~~~el~~G 729 (1077)
+-||+|..+-. ++ .+-|..+.+|.++...|.+..|+|++..-.+ |+ .+ ..++...++....+.+|
T Consensus 3 m~i~vk~~~g~--~~----~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~-----~g---~~L~d~~tL~~y~i~~~ 68 (159)
T 3rt3_B 3 WDLTVKMLAGN--EF----QVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHP-----SG---VALQDRVPLASQGLGPG 68 (159)
T ss_dssp CEEEEEETTSC--EE----EEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEET-----TC---CBCCTTSCGGGGTCCTT
T ss_pred eEEEEEECCCC--EE----EEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcC-----CC---CCCCCCCCHHHcCCCCC
Confidence 34777766533 22 2467899999999999999999999877665 63 12 23566789999999999
Q ss_pred CEEEEEecC-CCCCCCCCCCCCHHHHHHHHhcceEEEEEecCCCCCCCeEEEecccCCHHHHHHHHHHHcCCCCCCcEEE
Q 037461 730 DIICFQKST-PIEGVGKFRYPEVPSFLDYVHNRQVVHFRSLEKPKEDDFCLEMSKLYTYDDVVERVAQQLGLDDPSKIRL 808 (1077)
Q Consensus 730 dIi~fQ~~~-~~~~~~~~~~~~~~~yy~~L~nr~~v~f~~~~~~~~~~f~~~ls~~~~Y~~~~~~v~~~l~~~~p~~lr~ 808 (1077)
+.|..-... +. .+.|.++.. ....|.+.++...|=.+|-++|+++.|+ +|+..||
T Consensus 69 ~~l~l~~~~~~~--------------------~m~i~vk~~---~g~~~~~~v~~~~tV~~lK~~i~~~~gi-p~~~q~L 124 (159)
T 3rt3_B 69 STVLLVVDKSDE--------------------PLSILVRNN---KGRSSTYEVRLTQTVAHLKQQVSGLEGV-QDDLFWL 124 (159)
T ss_dssp CEEEEEECCCCC--------------------CEEEEEECT---TSCEEEEEECTTSBHHHHHHHHHHHHTC-CGGGEEE
T ss_pred CEEEEEccCCCC--------------------cEEEEEECC---CCCEEEEEeCCCCCHHHHHHHHHHHHCC-CHHHEEE
Confidence 999987652 11 245555533 3346999999999999999999999997 5899998
Q ss_pred ee
Q 037461 809 TS 810 (1077)
Q Consensus 809 ~~ 810 (1077)
.-
T Consensus 125 ~~ 126 (159)
T 3rt3_B 125 TF 126 (159)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 34
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=89.47 E-value=0.79 Score=41.47 Aligned_cols=75 Identities=17% Similarity=0.148 Sum_probs=56.8
Q ss_pred CCcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCC
Q 037461 648 KEDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLE 727 (1077)
Q Consensus 648 ~~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~ 727 (1077)
+..|.|++|-.+- .++ ++-|.++.+++.|+...+++.|+|++.--.+|. + +.|.+..|....+++
T Consensus 5 ~~~i~ikVk~~~g--~~i----~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~Fd------G---~~l~~~~Tp~dl~me 69 (94)
T 2io1_B 5 NDHINLKVAGQDG--SVV----QFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD------G---QPINETDTPAQLEME 69 (94)
T ss_dssp -CEEEEEEECTTS--CEE----EEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET------T---EECCTTCCTTTTTCC
T ss_pred CCeEEEEEECCCC--CEE----EEEECCCCHHHHHHHHHHHHhCCCcccEEEEEC------C---EEcCCCCCHHHcCCC
Confidence 4568888885543 343 467899999999999999999999875544443 2 456778899999999
Q ss_pred CCCEEEEEec
Q 037461 728 DGDIICFQKS 737 (1077)
Q Consensus 728 ~GdIi~fQ~~ 737 (1077)
+||+|=+-..
T Consensus 70 dgD~Idv~~~ 79 (94)
T 2io1_B 70 DEDTIDVFQQ 79 (94)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEe
Confidence 9998866554
No 35
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=88.55 E-value=1.2 Score=40.00 Aligned_cols=74 Identities=18% Similarity=0.149 Sum_probs=55.8
Q ss_pred CcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCC
Q 037461 649 EDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLED 728 (1077)
Q Consensus 649 ~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~ 728 (1077)
..|.|++|-.| ..++ .+-|.++.+++.|+...+++.|+|++.--.+|. + +.|.+..|....++++
T Consensus 4 ~~i~ikVk~~~--g~~v----~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~Fd------G---~~l~~~~Tp~dl~med 68 (91)
T 2io0_B 4 DHINLKVAGQD--GSVV----QFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD------G---QPINETDTPAQLEMED 68 (91)
T ss_dssp CEEEEEEECTT--SCEE----EEEEETTSCTHHHHHHHHHHTTCCSTTEEEEET------T---EECCTTCCTTTTTCCT
T ss_pred CeEEEEEECCC--CCEE----EEEECCCChHHHHHHHHHHHhCCCcccEEEEEC------C---EEcCCCCCHHHcCCCC
Confidence 45677777433 3333 567899999999999999999999876544453 2 4567788999999999
Q ss_pred CCEEEEEec
Q 037461 729 GDIICFQKS 737 (1077)
Q Consensus 729 GdIi~fQ~~ 737 (1077)
||+|=+-..
T Consensus 69 gD~Idv~~~ 77 (91)
T 2io0_B 69 EDTIDVFQQ 77 (91)
T ss_dssp TEEEEEEEC
T ss_pred CCEEEEEEe
Confidence 998866554
No 36
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=85.69 E-value=1.6 Score=39.34 Aligned_cols=73 Identities=18% Similarity=0.147 Sum_probs=55.2
Q ss_pred CCcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCC
Q 037461 648 KEDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLE 727 (1077)
Q Consensus 648 ~~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~ 727 (1077)
...|.|++|-.+ ...+ ++-|.++.+++.|+...++..|+|++.--.+|. + +.|.+..|....++.
T Consensus 15 ~~~i~ikV~~~~--g~~i----~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fd------G---~~l~~~~Tp~dl~me 79 (93)
T 2d07_B 15 NDHINLKVAGQD--GSVV----QFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD------G---QPINETDTPAQLEME 79 (93)
T ss_dssp CCEEEEEEECTT--SCEE----EEEEETTSCHHHHHHHHHHHHTCCGGGEEEEET------T---EECCTTCCTTTTTCC
T ss_pred CCeEEEEEECCC--CCEE----EEEEccCCHHHHHHHHHHHHhCCCccceEEEEC------C---EEcCCCCCHHHcCCC
Confidence 456777777443 3343 577899999999999999999999875444443 2 456778899999999
Q ss_pred CCCEEEEE
Q 037461 728 DGDIICFQ 735 (1077)
Q Consensus 728 ~GdIi~fQ 735 (1077)
+||+|=+-
T Consensus 80 dgD~Idv~ 87 (93)
T 2d07_B 80 DEDTIDVF 87 (93)
T ss_dssp TTEEEEEE
T ss_pred CCCEEEEE
Confidence 99988554
No 37
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=84.91 E-value=2.2 Score=39.29 Aligned_cols=74 Identities=18% Similarity=0.149 Sum_probs=57.1
Q ss_pred CCcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCC
Q 037461 648 KEDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLE 727 (1077)
Q Consensus 648 ~~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~ 727 (1077)
...|.|++|-.+- ..+ ++-|.++.+++.|+...+++.|+|++.--.+|. + +.|.+..|....++.
T Consensus 22 ~~~I~IkVk~~~g--~~i----~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~Fd------G---~~l~~~~Tp~dl~me 86 (104)
T 1wz0_A 22 NDHINLKVAGQDG--SVV----QFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD------G---QPINETDTPAQLEME 86 (104)
T ss_dssp SCCEEEEEECSSS--CEE----EEEECTTSCHHHHHHHHHHHHTCCTTTSCEESS------S---SBCCTTSCTTTTTCC
T ss_pred CCeEEEEEECCCC--CEE----EEEEcCCChHHHHHHHHHHHhCCCcceEEEEEC------C---EEcCCCCCHHHcCCC
Confidence 4568888885443 333 577899999999999999999999875544443 2 457788899999999
Q ss_pred CCCEEEEEe
Q 037461 728 DGDIICFQK 736 (1077)
Q Consensus 728 ~GdIi~fQ~ 736 (1077)
+||+|-+-.
T Consensus 87 dgD~Idv~~ 95 (104)
T 1wz0_A 87 DEDTIDVFQ 95 (104)
T ss_dssp TTEEEEECC
T ss_pred CCCEEEEEE
Confidence 999886644
No 38
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=84.52 E-value=1.9 Score=40.16 Aligned_cols=78 Identities=17% Similarity=0.159 Sum_probs=59.7
Q ss_pred CCCCCcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccc
Q 037461 645 EKTKEDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRAS 724 (1077)
Q Consensus 645 ~~~~~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~ 724 (1077)
.+....|.|++|-.+-. .+ .+-|.++.+++.|+...+++.|+|++.--.+|. + +.|.+..|....
T Consensus 21 ~~~~~~I~IkVk~~~g~--~i----~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFd------G---~~L~~~~Tp~dl 85 (110)
T 2k8h_A 21 KEETALVAVKVVNADGA--EM----FFRIKSRTALKKLIDTYCKKQGISRNSVRFLFD------G---TPIDETKTPEEL 85 (110)
T ss_dssp CCCCCCEEEEEEETTSC--CE----EEEECTTSSHHHHHHHHHHHHTCCSSSCEEESS------S---CBCCSSSHHHHH
T ss_pred CCCCCeEEEEEECCCCC--EE----EEEECCCChHHHHHHHHHHHhCCCcccEEEEEC------C---EEcCCCCCHHHc
Confidence 34556788888865443 33 567899999999999999999999886544443 2 457778899999
Q ss_pred cCCCCCEEEEEec
Q 037461 725 QLEDGDIICFQKS 737 (1077)
Q Consensus 725 el~~GdIi~fQ~~ 737 (1077)
++.+||+|=+-..
T Consensus 86 ~mEDgD~Idv~~~ 98 (110)
T 2k8h_A 86 GMEDDDVIDAMVE 98 (110)
T ss_dssp HCSSEEEEEEECC
T ss_pred CCCCCCEEEEEEc
Confidence 9999998866544
No 39
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=83.65 E-value=1.3 Score=37.85 Aligned_cols=56 Identities=18% Similarity=0.189 Sum_probs=46.0
Q ss_pred EEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCCCEEEE
Q 037461 670 RLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICF 734 (1077)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~GdIi~f 734 (1077)
++-|.++.+++.|+...++..|+|++.--.+|. + +.|.+..|....++++||+|=+
T Consensus 15 ~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fd------G---~~l~~~~Tp~~l~medgD~Idv 70 (72)
T 1wm3_A 15 QFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD------G---QPINETDTPAQLEMEDEDTIDV 70 (72)
T ss_dssp EEEECTTSCTHHHHHHHHHHHTCCTTTCEEEET------T---EECCTTCCTTTTTCCTTEEEEE
T ss_pred EEEECCCChHHHHHHHHHHHhCCCcceEEEEEC------C---EEcCCCCCHHHcCCCCCCEEEE
Confidence 567899999999999999999999876655553 2 4567788999999999998843
No 40
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=82.43 E-value=3.2 Score=38.32 Aligned_cols=75 Identities=23% Similarity=0.193 Sum_probs=56.6
Q ss_pred CCCCcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCccccccccccccccccc
Q 037461 646 KTKEDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQ 725 (1077)
Q Consensus 646 ~~~~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~e 725 (1077)
+.+..|.|++|- + ..++ .+-|.++.+++.|+...+++.|+++++--.+|. + +.|.+..|....+
T Consensus 27 ~~~~~I~IkV~~-~--g~~i----~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~Fd------G---~rl~~~~Tp~dl~ 90 (106)
T 2eke_C 27 KPETHINLKVSD-G--SSEI----FFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD------G---IRIQADQTPEDLD 90 (106)
T ss_dssp CCCSEEEEEEEC-S--SCEE----EEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET------T---EECCTTCCTTTTT
T ss_pred CCCCeEEEEEec-C--CcEE----EEEeCCCCHHHHHHHHHHHHhCCCcccEEEEEC------C---eEcCCCCCHHHcC
Confidence 445678888886 4 3333 467899999999999999999999875444443 2 4567778999999
Q ss_pred CCCCCEEEEEe
Q 037461 726 LEDGDIICFQK 736 (1077)
Q Consensus 726 l~~GdIi~fQ~ 736 (1077)
+.+||+|=+-.
T Consensus 91 medgD~Idv~~ 101 (106)
T 2eke_C 91 MEDNDIIEAHR 101 (106)
T ss_dssp CCTTEEEEEEE
T ss_pred CCCCCEEEEEe
Confidence 99999886543
No 41
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=80.89 E-value=2.3 Score=36.78 Aligned_cols=55 Identities=18% Similarity=0.238 Sum_probs=47.2
Q ss_pred EEEecCCCchhhHHHHHHhcCCCCCCcEEE-EEEeecCCcccccccccccccccccCCCCCEEEE
Q 037461 671 LFVKSTGKPMEYLPKLNEMAGYAPDEEIDL-YEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICF 734 (1077)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l-yEEik~~p~~~ie~i~~~~tf~~~el~~GdIi~f 734 (1077)
+-|+++.+|+.|+..-|++-|+|+++.|.| |+ + +.+++++|+...|+.|||-|=.
T Consensus 24 f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFD------G---dRLdp~~tp~DlemeD~D~IDv 79 (82)
T 3goe_A 24 LSIPVDFTVKDLIKRYCTEVKISFHERIRLEFE------G---EWLDPNDQVQSTELEDEDQVSV 79 (82)
T ss_dssp EEEETTSBHHHHHHHHHHHHTCCCCTTCEEEET------T---EECCTTSBGGGSSCCTTCEEEE
T ss_pred EEecCCCCHHHHHHHHHHHcCCCcCceEEEEEc------C---cccCccCChhhhCCcCCceeee
Confidence 468899999999999999999999987754 33 3 6789999999999999998754
No 42
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=80.83 E-value=2.4 Score=38.33 Aligned_cols=75 Identities=21% Similarity=0.154 Sum_probs=57.1
Q ss_pred CCCcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccC
Q 037461 647 TKEDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQL 726 (1077)
Q Consensus 647 ~~~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el 726 (1077)
+...+-||+|..+-. ++ .+-|..+.+|.+|...|.+..|+|++..-.+|. + ..+....|+....|
T Consensus 18 ~~~~m~I~Vk~~~g~--~~----~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~------G---k~L~d~~tl~dy~i 82 (97)
T 1wyw_B 18 EGEYIKLKVIGQDSS--EI----HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE------G---QRIADNHTPKELGM 82 (97)
T ss_dssp -CCEEEEEEECTTCC--EE----EEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET------T---EECCTTCCHHHHTC
T ss_pred CCCcEEEEEEeCCCC--EE----EEEECCCCcHHHHHHHHHHHHCCChhhEEEEEC------C---eEcCCCCCHHHCCC
Confidence 445689999865543 33 356889999999999999999999987666664 2 23556789999999
Q ss_pred CCCCEEEEEe
Q 037461 727 EDGDIICFQK 736 (1077)
Q Consensus 727 ~~GdIi~fQ~ 736 (1077)
++||+|..-.
T Consensus 83 ~~g~~I~l~~ 92 (97)
T 1wyw_B 83 EEEDVIEVYQ 92 (97)
T ss_dssp CTTCEEEEEE
T ss_pred CCCCEEEEEE
Confidence 9999987643
No 43
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=80.59 E-value=1.5 Score=38.12 Aligned_cols=72 Identities=13% Similarity=0.163 Sum_probs=53.6
Q ss_pred CcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCC
Q 037461 649 EDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLED 728 (1077)
Q Consensus 649 ~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~ 728 (1077)
+.|.|++|--+-. +.+ ++-|.++.+++.|+...++..|+|+++--.+|. + +.|.+..|....++++
T Consensus 6 ~~i~ikV~~~~g~-~~i----~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fd------G---~~l~~~~Tp~~l~med 71 (79)
T 3a4r_A 6 QELRLRVQGKEKH-QML----EISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFD------G---TKLSGKELPADLGLES 71 (79)
T ss_dssp CCEEEEEECSSTT-CEE----EEEECTTSCHHHHHHHHHHHHTCTTCCCEEEET------T---EECCSCCCHHHHTCCT
T ss_pred CEEEEEEEeCCCC-EEE----EEEECCCChHHHHHHHHHHHhCCCcccEEEEEC------C---EEcCCCCCHHHcCCCC
Confidence 4577777654432 122 457899999999999999999999886544453 2 4567788999999999
Q ss_pred CCEEEE
Q 037461 729 GDIICF 734 (1077)
Q Consensus 729 GdIi~f 734 (1077)
||+|=+
T Consensus 72 gD~Idv 77 (79)
T 3a4r_A 72 GDLIEV 77 (79)
T ss_dssp TCEEEE
T ss_pred CCEEEE
Confidence 999854
No 44
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=80.50 E-value=2.3 Score=38.39 Aligned_cols=40 Identities=15% Similarity=0.227 Sum_probs=32.8
Q ss_pred eEEEEEEeeccCccccccccccCcceEEEeccCCcHHHHHHHHHHHhCCCcc
Q 037461 955 RLIHVYHFTKETAQNQMQIQNFGEPFFLVIHEGETLQEIKVRIQRKLQVPDE 1006 (1077)
Q Consensus 955 ~~i~v~hf~k~~~~~h~~~~~fGiPF~~~i~~~E~~~~~k~ri~~~~~~~~~ 1006 (1077)
++|+|++-.. +..-.+.|.+.||+..+|+||++++||+..
T Consensus 13 kvvHVf~~~~------------a~~h~v~I~~~etv~~~ke~V~eqTgIp~~ 52 (94)
T 4efo_A 13 MVIHVFSLQQ------------MTAHKIYIHSYNTATIFHELVYKQTKIISS 52 (94)
T ss_dssp EEEEEEETTT------------TEEEEEEEETTCBHHHHHHHHHHHHCCCGG
T ss_pred eeEEEEEccc------------ceEEEEEeccchHHHHHHHHHHHHhCCCHH
Confidence 6777765433 455579999999999999999999999875
No 45
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=80.12 E-value=2.3 Score=36.45 Aligned_cols=71 Identities=21% Similarity=0.164 Sum_probs=53.5
Q ss_pred EEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCCC
Q 037461 651 ILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGD 730 (1077)
Q Consensus 651 ~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~Gd 730 (1077)
+-||+|..+-. ++ .+-|.++.+|.+|...+.+..|+|++..-.+|. + ..++...|+....+++||
T Consensus 4 m~i~vk~~~g~--~~----~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~------G---~~L~d~~tl~~~~i~~~~ 68 (79)
T 2uyz_B 4 IKLKVIGQDSS--EI----HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE------G---QRIADNHTPKELGMEEED 68 (79)
T ss_dssp EEEEEECTTCC--EE----EEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET------T---EECCTTCCHHHHTCCTTE
T ss_pred EEEEEECCCCC--EE----EEEECCCChHHHHHHHHHHHHCCCcccEEEEEC------C---EEeCCCCCHHHcCCCCCC
Confidence 56777765432 32 346789999999999999999999886655553 2 345567899999999999
Q ss_pred EEEEEe
Q 037461 731 IICFQK 736 (1077)
Q Consensus 731 Ii~fQ~ 736 (1077)
.|..-.
T Consensus 69 ~i~l~~ 74 (79)
T 2uyz_B 69 VIEVYQ 74 (79)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 987654
No 46
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=79.61 E-value=2.5 Score=38.02 Aligned_cols=70 Identities=9% Similarity=0.019 Sum_probs=53.7
Q ss_pred CcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCC
Q 037461 649 EDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLED 728 (1077)
Q Consensus 649 ~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~ 728 (1077)
..|-||+|...-.+.+ +-|.++++|.+|...|.+..|+|++.....|.. ..++...|+...+|++
T Consensus 20 ~mIqI~Vk~~~Gkk~~------v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~G---------k~LkD~~TL~dY~I~d 84 (93)
T 3plu_A 20 HMIEVVVNDRLGKKVR------VKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGG---------SVLKDHISLEDYEVHD 84 (93)
T ss_dssp CEEEEEEECTTSCEEE------EEEETTSBHHHHHHHHHHHHTCCGGGEEEEETT---------EECCTTSBTGGGTCCT
T ss_pred ceEEEEEECCCCCEEE------EEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCC---------EEccCcCCHHHcCCCC
Confidence 4588899875433222 457899999999999999999999887665532 2356678999999999
Q ss_pred CCEEE
Q 037461 729 GDIIC 733 (1077)
Q Consensus 729 GdIi~ 733 (1077)
|+.|-
T Consensus 85 gstLh 89 (93)
T 3plu_A 85 QTNLE 89 (93)
T ss_dssp TCEEE
T ss_pred CCEEE
Confidence 99873
No 47
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=79.14 E-value=11 Score=34.03 Aligned_cols=81 Identities=7% Similarity=-0.090 Sum_probs=58.9
Q ss_pred CCCcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccc-ccccccccccc
Q 037461 647 TKEDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEP-IEKRCTFRASQ 725 (1077)
Q Consensus 647 ~~~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~-i~~~~tf~~~e 725 (1077)
+.+.|-|+++.=....+. -.+-+.++.+|++|...|..+.|+|++..-.+|.. ++..+.. .+...++...-
T Consensus 12 ~~~~v~l~It~s~~~~~~----~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~----~g~~~~~L~~D~~tL~~Y~ 83 (95)
T 2kjr_A 12 KSDFIKVNVSNSHNDAVA----FEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFK----GDTCVSTMDNNDAQLGYYA 83 (95)
T ss_dssp CCCEEEEEEEESSCSCEE----EEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEE----TTEEEEECCCTTSBHHHHC
T ss_pred CCCeEEEEEEECCCCceE----EEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEec----CCcccceeCCCCCCHhHCC
Confidence 356788999873322222 23568899999999999999999999999777763 1111123 36668898889
Q ss_pred CCCCCEEEEE
Q 037461 726 LEDGDIICFQ 735 (1077)
Q Consensus 726 l~~GdIi~fQ 735 (1077)
|++|+.|...
T Consensus 84 i~~gstihlv 93 (95)
T 2kjr_A 84 NSDGLRLHVV 93 (95)
T ss_dssp CSSSCEEEEE
T ss_pred cCCCCEEEEE
Confidence 9999998764
No 48
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=79.07 E-value=4.4 Score=37.94 Aligned_cols=72 Identities=22% Similarity=0.154 Sum_probs=53.9
Q ss_pred CCcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCC
Q 037461 648 KEDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLE 727 (1077)
Q Consensus 648 ~~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~ 727 (1077)
+..|.|.++--| ...+ ++-|.++.+++.|+...+++.|++.++--.+|.- +.|.+..|-...++.
T Consensus 38 ~~~I~LKV~~qd--g~ev----~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG---------~rI~~~~TP~dL~ME 102 (115)
T 3kyd_D 38 GEYIKLKVIGQD--SSEI----HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEG---------QRIADNHTPKELGME 102 (115)
T ss_dssp -CEEEEEEECTT--SCEE----EEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETT---------EECCTTCCTTTTTCC
T ss_pred CCeEEEEEEcCC--CCEE----EEEEccCChHHHHHHHHHHHhCCChhhEEEEECC---------eECCCCCCHHHcCCC
Confidence 345666665443 4443 5789999999999999999999998766555542 456778899999999
Q ss_pred CCCEEEE
Q 037461 728 DGDIICF 734 (1077)
Q Consensus 728 ~GdIi~f 734 (1077)
|||+|=+
T Consensus 103 DgD~IdV 109 (115)
T 3kyd_D 103 EEDVIEV 109 (115)
T ss_dssp TTCEEEE
T ss_pred CCCEEEE
Confidence 9998754
No 49
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=77.98 E-value=4.6 Score=35.77 Aligned_cols=74 Identities=12% Similarity=0.271 Sum_probs=57.0
Q ss_pred CCCcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccC
Q 037461 647 TKEDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQL 726 (1077)
Q Consensus 647 ~~~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el 726 (1077)
....+-||+|..+-. ++ .+-|..+.+|.+|...|.+..|+|++..-.+|. + ..++...++....|
T Consensus 14 ~~~~m~i~Vk~~~g~--~~----~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~------G---k~L~D~~tL~~~gi 78 (91)
T 3v6c_B 14 PRGSMQIFVNTLTGT--HI----TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNI 78 (91)
T ss_dssp CCCSEEEEEECTTSC--EE----EEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET------T---EECCTTCBTGGGTC
T ss_pred CCCeEEEEEEeCCCC--EE----EEEECCCCCHHHHHHHHHhhhCCChhhEEEEEC------C---eECCCcCcHHHCCC
Confidence 345689999987643 22 246789999999999999999999988766663 2 23456689999999
Q ss_pred CCCCEEEEE
Q 037461 727 EDGDIICFQ 735 (1077)
Q Consensus 727 ~~GdIi~fQ 735 (1077)
.+|+.|..-
T Consensus 79 ~~g~~i~l~ 87 (91)
T 3v6c_B 79 QKESTLHLV 87 (91)
T ss_dssp CTTCEEEEE
T ss_pred CCCCEEEEE
Confidence 999988653
No 50
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=77.89 E-value=4.2 Score=35.43 Aligned_cols=73 Identities=15% Similarity=0.267 Sum_probs=56.6
Q ss_pred CCcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCC
Q 037461 648 KEDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLE 727 (1077)
Q Consensus 648 ~~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~ 727 (1077)
...+.||+|..+-. ++ .+-|..+.+|.+|...|.+..|+|++..-.+|.- ..++...++....+.
T Consensus 10 ~~~m~i~vk~~~g~--~~----~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G---------~~L~d~~tL~~~~i~ 74 (88)
T 3dbh_I 10 GGSMLIKVKTLTGK--EI----EIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSG---------KQMNDEKTAADYKIL 74 (88)
T ss_dssp CCCEEEEEECTTSC--EE----EEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETT---------EECCTTSBGGGGTCC
T ss_pred CCcEEEEEEcCCCC--EE----EEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECC---------eECCCCCcHHHcCCC
Confidence 34588999987643 22 3468899999999999999999998887666632 234557899999999
Q ss_pred CCCEEEEE
Q 037461 728 DGDIICFQ 735 (1077)
Q Consensus 728 ~GdIi~fQ 735 (1077)
+|+.|..-
T Consensus 75 ~~~~i~l~ 82 (88)
T 3dbh_I 75 GGSVLHLV 82 (88)
T ss_dssp TTCEEEEC
T ss_pred CCCEEEEE
Confidence 99998764
No 51
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=77.12 E-value=4.6 Score=36.69 Aligned_cols=70 Identities=16% Similarity=0.208 Sum_probs=52.1
Q ss_pred EEEEeeeCCCCc-eEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCCC
Q 037461 652 LLFFKLYDPEKE-ELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGD 730 (1077)
Q Consensus 652 ~~f~k~~d~~~~-~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~Gd 730 (1077)
.|-||.-+.... .+ .+.|.++.+++-|+..-+++.|++.++---+|. + +.|.+..|-...++.|||
T Consensus 25 ~I~LkV~~~dg~~~v----~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FD------G---~rI~~~~TP~dLdMEDgD 91 (97)
T 2jxx_A 25 QLQLRVQGKEKHQTL----EVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFD------G---TKLSGRELPADLGMESGD 91 (97)
T ss_dssp EEEEEEEESSSSCEE----EEEEETTSCHHHHHHHHHHHTTCSSSCCEEEET------T---EECCSCSCHHHHTCCTTE
T ss_pred eEEEEEEcCCCCEEE----EEEECCCChHHHHHHHHHHHHCCCcccEEEEEC------C---EEcCCCCCHHHcCCCCCC
Confidence 455555555542 33 367899999999999999999999775433342 2 467788899999999999
Q ss_pred EEEE
Q 037461 731 IICF 734 (1077)
Q Consensus 731 Ii~f 734 (1077)
+|-+
T Consensus 92 ~IDv 95 (97)
T 2jxx_A 92 LIEV 95 (97)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9854
No 52
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=74.69 E-value=17 Score=32.82 Aligned_cols=82 Identities=9% Similarity=-0.069 Sum_probs=59.2
Q ss_pred CCcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCccccccc-ccccccccccC
Q 037461 648 KEDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPI-EKRCTFRASQL 726 (1077)
Q Consensus 648 ~~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i-~~~~tf~~~el 726 (1077)
.+.+.|+++.=....+. -.+-+.++.+|++|...|..+.|+|++..-.+|.-- .+. .+..+ +...++...-|
T Consensus 12 ~~~v~l~It~s~~~~~~----~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~--~g~-~~~~L~~D~~tL~~Y~I 84 (97)
T 2kj6_A 12 DDSVHLHITHANLKSFS----ADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDD--SGS-KVAVLSDDSRPLGFFSP 84 (97)
T ss_dssp CCCEEEEEEETTSSCCC----EEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECS--SSC-BCCCSSGGGSCHHHHCC
T ss_pred CceEEEEEEECCCCceE----EEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecC--CCc-ccceecCCcCCHHHCCC
Confidence 45688888873222222 235789999999999999999999999997777642 111 22333 66788988899
Q ss_pred CCCCEEEEEe
Q 037461 727 EDGDIICFQK 736 (1077)
Q Consensus 727 ~~GdIi~fQ~ 736 (1077)
++|+.|....
T Consensus 85 ~~g~~Ihlvd 94 (97)
T 2kj6_A 85 FDGFRLHIID 94 (97)
T ss_dssp CSCCEEEEEE
T ss_pred CCCCEEEEEe
Confidence 9999987654
No 53
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=74.49 E-value=5.2 Score=40.70 Aligned_cols=76 Identities=24% Similarity=0.204 Sum_probs=57.1
Q ss_pred CCCCcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCccccccccccccccccc
Q 037461 646 KTKEDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQ 725 (1077)
Q Consensus 646 ~~~~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~e 725 (1077)
++++.|.|.++ + .... -++-|.++.+++.|+...+++.|+|+++---+|. + ..|....|-...+
T Consensus 53 dp~e~InLKVk--~-dG~e----V~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFD------G---qRI~~ddTPeDLd 116 (207)
T 3tix_A 53 KPETHINLKVS--D-GSSE----IFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYD------G---IEIQADQTPEDLD 116 (207)
T ss_dssp --CCEEEEEEE--C-SSCE----EEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEET------T---EECCSSCCTTTTT
T ss_pred CCCCcEEEEEe--c-CCCE----EEEEEccCChHHHHHHHHHHHhCCCcccEEEEEC------C---eecCCCCCHHHcC
Confidence 45677888887 2 3333 3567899999999999999999999866555553 2 4567788999999
Q ss_pred CCCCCEEEEEec
Q 037461 726 LEDGDIICFQKS 737 (1077)
Q Consensus 726 l~~GdIi~fQ~~ 737 (1077)
+.|||+|=+-..
T Consensus 117 MEDGDtIDV~le 128 (207)
T 3tix_A 117 MEDNDIIEAHRE 128 (207)
T ss_dssp CCTTEEEEECCC
T ss_pred CCCCCEEEEEEe
Confidence 999998865544
No 54
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=73.90 E-value=3.6 Score=35.57 Aligned_cols=73 Identities=12% Similarity=0.205 Sum_probs=54.8
Q ss_pred cEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCC
Q 037461 650 DILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDG 729 (1077)
Q Consensus 650 ~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~G 729 (1077)
.+.||+|..+-.+ + .+-|+.+.+|.+|...|.+..|+|++..-.+|.- ..++...++....|.+|
T Consensus 3 ~m~i~vk~~~g~~--~----~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g---------~~L~d~~tL~~~~i~~~ 67 (85)
T 3n3k_B 3 HMRIVVKTLMGRT--I----ILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG---------KQLEDGRTLSDYNIHNH 67 (85)
T ss_dssp -CEEEEECGGGCE--E----EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETB---------EECCTTCBTTTTTCCTT
T ss_pred eEEEEEEeCCCCE--E----EEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECC---------eECCCCCCHHHCCCCCC
Confidence 3578888765432 2 2457889999999999999999999887666632 23455678999999999
Q ss_pred CEEEEEec
Q 037461 730 DIICFQKS 737 (1077)
Q Consensus 730 dIi~fQ~~ 737 (1077)
+.|..-..
T Consensus 68 ~~i~l~~r 75 (85)
T 3n3k_B 68 SALYLLLK 75 (85)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEEe
Confidence 99877644
No 55
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=73.24 E-value=3.5 Score=37.21 Aligned_cols=76 Identities=14% Similarity=0.242 Sum_probs=55.9
Q ss_pred CCCCcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCccccccccccccccccc
Q 037461 646 KTKEDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQ 725 (1077)
Q Consensus 646 ~~~~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~e 725 (1077)
.....+-||+|..+-.+ + .+-|..+.+|.+|...|.+..|+|++..-.+|. + ..++...++....
T Consensus 18 ~~~~~m~I~Vk~~~g~~--~----~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~------G---k~L~D~~tL~~~~ 82 (98)
T 4hcn_B 18 FQGRPMQIFVKTLTGKT--I----TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYN 82 (98)
T ss_dssp ----CCEEEEEETTCCE--E----EEECCTTCBHHHHHHHHHHHHCCCGGGCEEEET------T---EECCTTCBSGGGT
T ss_pred CCCCeEEEEEEeCCCCE--E----EEEECCCCcHHHHHHHHHHHhCCChhHEEEEEC------C---EECCCCCcHHHCC
Confidence 34456899999876432 2 245788999999999999999999988766663 2 2345677899999
Q ss_pred CCCCCEEEEEe
Q 037461 726 LEDGDIICFQK 736 (1077)
Q Consensus 726 l~~GdIi~fQ~ 736 (1077)
|.+|+.|..-.
T Consensus 83 i~~g~~i~l~~ 93 (98)
T 4hcn_B 83 IQKESTLHLVL 93 (98)
T ss_dssp CCTTEEEEEEC
T ss_pred CCCCCEEEEEE
Confidence 99999887643
No 56
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=72.06 E-value=8.7 Score=34.46 Aligned_cols=66 Identities=17% Similarity=0.084 Sum_probs=49.9
Q ss_pred EEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCCCEEEEEec
Q 037461 671 LFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICFQKS 737 (1077)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~GdIi~fQ~~ 737 (1077)
.-++.+.+|++|...|.++.|.|+...-..|..-. .|...++.-+...++...-+++||.|.+...
T Consensus 27 ~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~-~~~~~~~L~~d~~~L~~y~i~~G~~I~V~d~ 92 (97)
T 1wjn_A 27 KQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSK-MPGREIELENDLQPLQFYSVENGDCLLVRWS 92 (97)
T ss_dssp EEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTT-SCSCEEECCCSSSBSGGGTCCTTCEEEEECC
T ss_pred EECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCC-CCceeeccCCCcccHhhcCCCCCCEEEEEec
Confidence 45789999999999999999999988865555211 1332333446668888889999999998864
No 57
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=71.57 E-value=6.4 Score=33.88 Aligned_cols=73 Identities=14% Similarity=0.256 Sum_probs=55.0
Q ss_pred cEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCC
Q 037461 650 DILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDG 729 (1077)
Q Consensus 650 ~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~G 729 (1077)
.+.||+|..+-. ++ .+-|+.+.+|.+|...|.+..|+|++..-.+|. + ..++...++....+.+|
T Consensus 3 ~m~i~vk~~~g~--~~----~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~------g---~~L~d~~tL~~~~i~~~ 67 (85)
T 3mtn_B 3 HMQIFVKTLTGK--TI----TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNIQKW 67 (85)
T ss_dssp CEEEEEECTTSC--EE----EEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET------T---EECCTTSBTGGGTCCTT
T ss_pred eEEEEEEcCCCC--EE----EEEECCCCCHHHHHHHHHHHHCcChHHEEEEEC------C---EECCCCCCHHHcCCCCC
Confidence 467888887643 22 246789999999999999999999887766653 2 23455678988999999
Q ss_pred CEEEEEec
Q 037461 730 DIICFQKS 737 (1077)
Q Consensus 730 dIi~fQ~~ 737 (1077)
+.|..-..
T Consensus 68 ~~l~l~~r 75 (85)
T 3mtn_B 68 STLFLLLR 75 (85)
T ss_dssp CEEEEECC
T ss_pred CEEEEEEE
Confidence 98877543
No 58
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=71.40 E-value=8 Score=35.30 Aligned_cols=46 Identities=13% Similarity=0.070 Sum_probs=35.2
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCccc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDI 1029 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~~ 1029 (1077)
|-+|.+.|.+.+|..++|++|+++.|++- ++.++ +..++ -|.|+..
T Consensus 38 Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~---~qQrL--i~~Gk--~L~D~~T 83 (100)
T 1uh6_A 38 GKKVRVKCNTDDTIGDLKKLIAAQTGTRW---NKIVL--KKWYT--IFKDHVS 83 (100)
T ss_dssp SSCEEEEEETTSBHHHHHHHHHHHHCCCG---GGCEE--EETTE--ECCSSCB
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCCCH---HHEEE--EECCE--ECCCCCC
Confidence 88999999999999999999999999984 44444 23343 4666543
No 59
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=71.30 E-value=5.4 Score=38.21 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=30.6
Q ss_pred eEEEecccCCHHHHHHHHHHHcCCCCCCcEEEeec
Q 037461 777 FCLEMSKLYTYDDVVERVAQQLGLDDPSKIRLTSH 811 (1077)
Q Consensus 777 f~~~ls~~~~Y~~~~~~v~~~l~~~~p~~lr~~~~ 811 (1077)
-.+.+-+++++.++.+.||+.+|+ +|..+|||..
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~-~~~~~RlW~~ 91 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGF-PQDQIRLWPM 91 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCC-CGGGCEEEEC
T ss_pred ceEEEeccCcHHHHHHHHHHHhCC-CcccEEEEEe
Confidence 356788999999999999999998 5999999985
No 60
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.81 E-value=9.3 Score=32.52 Aligned_cols=72 Identities=10% Similarity=0.056 Sum_probs=54.0
Q ss_pred CcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCC
Q 037461 649 EDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLED 728 (1077)
Q Consensus 649 ~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~ 728 (1077)
..+-||+|..+- +.+ .+-|+.+.+|.+|...|.+..|+|++..-.+|. + ..++...++....+.+
T Consensus 6 ~~m~i~vk~~~g--~~~----~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~------g---k~L~d~~tL~~~~i~~ 70 (81)
T 2dzi_A 6 SGMQLTVKALQG--REC----SLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFK------G---KALADGKRLSDYSIGP 70 (81)
T ss_dssp SSEEEEEEETTS--CEE----EEEECSSCBHHHHHHHHHHHTCCCTTTCEEEET------T---EECCTTSBGGGGTCCS
T ss_pred CcEEEEEEeCCC--CEE----EEEECCCCcHHHHHHHHHHHHCcCHHHEEEEEC------C---eECCCCCcHHHcCCCC
Confidence 457888886543 233 346789999999999999999999988776663 2 1245567898899999
Q ss_pred CCEEEEE
Q 037461 729 GDIICFQ 735 (1077)
Q Consensus 729 GdIi~fQ 735 (1077)
|+.|..-
T Consensus 71 g~~i~l~ 77 (81)
T 2dzi_A 71 NSKLNLV 77 (81)
T ss_dssp SBCCEEE
T ss_pred CCEEEEE
Confidence 9987654
No 61
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=70.00 E-value=7.7 Score=33.09 Aligned_cols=71 Identities=11% Similarity=0.129 Sum_probs=53.9
Q ss_pred cEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCC
Q 037461 650 DILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDG 729 (1077)
Q Consensus 650 ~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~G 729 (1077)
.+.||+|..+-. ++ .+-|..+.+|.+|...|.+..|+|++..-.+|. + ..++...++....+++|
T Consensus 4 ~m~i~Vk~~~g~--~~----~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~------G---~~L~d~~tL~~~~i~~~ 68 (79)
T 3phx_B 4 PLSILVRNNKGR--SS----TYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE------G---KPLEDQLPLGEYGLKPL 68 (79)
T ss_dssp CEEEEEECTTSC--EE----EEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET------T---EECCTTSBGGGGTCCTT
T ss_pred CEEEEEEeCCCC--EE----EEEECCcChHHHHHHHHHhhcCCCHHHEEEEEC------C---EECCCCCcHHHCCCCCC
Confidence 367888876543 22 246789999999999999999999888766663 2 23455789999999999
Q ss_pred CEEEEE
Q 037461 730 DIICFQ 735 (1077)
Q Consensus 730 dIi~fQ 735 (1077)
+.|-.-
T Consensus 69 ~~l~l~ 74 (79)
T 3phx_B 69 STVFMN 74 (79)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 988654
No 62
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=69.98 E-value=9 Score=39.95 Aligned_cols=66 Identities=12% Similarity=0.249 Sum_probs=52.8
Q ss_pred EEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCccccccccc-ccccccccCCCCCEEEEEecC
Q 037461 670 RLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEK-RCTFRASQLEDGDIICFQKST 738 (1077)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~-~~tf~~~el~~GdIi~fQ~~~ 738 (1077)
.+.+++..++.++...+++++++|+++++.||-=.. .+. .+.++. ..|+..+.|++|+-|+.+...
T Consensus 143 ~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~--~~~-~~~L~~~~~tl~~~~l~~~Q~illE~r~ 209 (217)
T 4a3p_A 143 TRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYM--SNT-FEPLNKPDSTIQDAGLYQGQVLVIEQKN 209 (217)
T ss_dssp EEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEE--TTE-EEECCCTTSBHHHHTCCTTCEEEEEECC
T ss_pred EEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecC--CCC-eeecCCCCCCHHHhCCCCCCEEEEEEec
Confidence 456799999999999999999999998888876432 222 245544 479999999999999998765
No 63
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=69.56 E-value=10 Score=39.51 Aligned_cols=66 Identities=18% Similarity=0.237 Sum_probs=45.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhhccccCCCCccEEEEEEe-ccEEEEecCCccccccccc-ccceEEeee
Q 037461 876 SVHTIRLPKQSTVGDVINDLKTKVELSQPDAELRLLEVF-YHKIYKIFPLNEKIENIND-QYWTLRAEE 942 (1077)
Q Consensus 876 ~~~~~~v~k~~tv~dll~~l~~~~~~~~~~~~lRl~ev~-~~ki~~~~~~~~~i~~i~~-~~~~~~~E~ 942 (1077)
..+.+.+.|..||.+|++.+++.++++.+ .++|||... .++...+-..+.++.+.+= ....+-+|.
T Consensus 140 ~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~-~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~ 207 (217)
T 4a3p_A 140 NVVTRRFSKADTIDTIEKEIRKIFSIPDE-KETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQ 207 (217)
T ss_dssp EEEEEEECTTSBHHHHHHHHHHHTTCCTT-SCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEE
T ss_pred cceEEEEcccchHHHHHHHHHHHhCCCCC-CceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEE
Confidence 35678999999999999999999998654 469999987 4444444344456655421 123455554
No 64
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=68.12 E-value=1.5 Score=41.97 Aligned_cols=36 Identities=22% Similarity=0.357 Sum_probs=28.4
Q ss_pred cceeecccCCcccchhhhhHHHhhh-HHHHHHhccCC
Q 037461 196 TGYVGLKNQGATCYMNSLLQTLFHI-PYFRKAVYHMP 231 (1077)
Q Consensus 196 ~g~vGL~N~GnTCYmNSvLQ~L~~~-p~fr~~l~~~~ 231 (1077)
..+.|+.|.-++|++|++||..... .+|.+.+|..|
T Consensus 11 k~fys~pN~hdncWLNtilQLfryvdepfFd~~y~sp 47 (167)
T 1qmy_A 11 KTFYSRPNNHDNAWLNAILQLFRYVEEPFFDWVYSSP 47 (167)
T ss_dssp EECCCCCCSSSCHHHHHHHHHHHHHTCCTTHHHHTCS
T ss_pred cccccCCCCCcchHHHHHHHHHHHcCccchhhccCCh
Confidence 3568999999999999999998554 46777777544
No 65
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=67.98 E-value=15 Score=30.89 Aligned_cols=70 Identities=13% Similarity=0.275 Sum_probs=52.1
Q ss_pred EEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCCC
Q 037461 651 ILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGD 730 (1077)
Q Consensus 651 ~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~Gd 730 (1077)
+-||+|. +- +++ .+-++.+.+|.+|...|.+..|+|++..-.+|. + ..++...++....+.+|+
T Consensus 5 m~i~vk~-~g--~~~----~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~------g---k~L~d~~tL~~~~i~~g~ 68 (77)
T 2bwf_A 5 LNIHIKS-GQ--DKW----EVNVAPESTVLQFKEAINKANGIPVANQRLIYS------G---KILKDDQTVESYHIQDGH 68 (77)
T ss_dssp EEEEEEE-TT--EEE----EEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET------T---EECCTTSBTGGGTCCTTC
T ss_pred EEEEEEE-CC--EEE----EEEECCCCcHHHHHHHHHHHhCCCHHHEEEEEC------C---eEcCCCCCHHHcCCCCCC
Confidence 5678887 32 222 346789999999999999999999887765653 2 124556789889999999
Q ss_pred EEEEEe
Q 037461 731 IICFQK 736 (1077)
Q Consensus 731 Ii~fQ~ 736 (1077)
.|..-.
T Consensus 69 ~i~l~~ 74 (77)
T 2bwf_A 69 SVHLVK 74 (77)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 987654
No 66
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=67.92 E-value=9.4 Score=39.29 Aligned_cols=76 Identities=22% Similarity=0.176 Sum_probs=57.9
Q ss_pred CCCCcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCccccccccccccccccc
Q 037461 646 KTKEDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQ 725 (1077)
Q Consensus 646 ~~~~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~e 725 (1077)
++..+|.|.++. .... -++-|.++.+++.|+...+++.|+|.+.---+|. + ..|....|-...+
T Consensus 25 ~~~~~I~LkV~~---~g~~----v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~Fd------G---~rI~~~~TP~dL~ 88 (200)
T 3pge_A 25 KPETHINLKVSD---GSSE----IFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD------G---IRIQADQTPEDLD 88 (200)
T ss_dssp CCCCCEEEEEEC---SSCE----EEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEET------T---EECCTTCCTTTTT
T ss_pred CCCCeEEEEEec---CCCE----EEEEEecCCHHHHHHHHHHHHhCCChhhEEEEEC------C---EEcCCCCCHHHcC
Confidence 456789999973 3333 3667899999999999999999999766544553 2 4577788999999
Q ss_pred CCCCCEE-EEEec
Q 037461 726 LEDGDII-CFQKS 737 (1077)
Q Consensus 726 l~~GdIi-~fQ~~ 737 (1077)
+.+||+| +|+..
T Consensus 89 MEdgD~Idv~~~q 101 (200)
T 3pge_A 89 MEDNDIIEAHREQ 101 (200)
T ss_dssp CCTTEEEEEEECC
T ss_pred CCCCCEEEEEecc
Confidence 9999966 55543
No 67
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=67.33 E-value=6.6 Score=32.89 Aligned_cols=70 Identities=14% Similarity=0.270 Sum_probs=51.0
Q ss_pred EEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCCCEE
Q 037461 653 LFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDII 732 (1077)
Q Consensus 653 ~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~GdIi 732 (1077)
||+|..+-. ++ .+-++.+.+|++|...|.+..|+|++..-.+|. + ..++...++....+.+|+.|
T Consensus 3 i~vk~~~g~--~~----~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~------g---~~L~d~~tL~~~~i~~g~~i 67 (76)
T 3a9j_A 3 IFVKTLTGK--TI----TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNIQRESTL 67 (76)
T ss_dssp EEEEETTSC--EE----EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET------T---EECCTTCBTGGGTCCTTCEE
T ss_pred EEEEcCCCC--EE----EEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC------C---eECCCCCcHHHcCCCCCCEE
Confidence 566665432 22 345788999999999999999999887766663 2 12445678998999999988
Q ss_pred EEEec
Q 037461 733 CFQKS 737 (1077)
Q Consensus 733 ~fQ~~ 737 (1077)
..-..
T Consensus 68 ~l~~~ 72 (76)
T 3a9j_A 68 HLVLR 72 (76)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 76543
No 68
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=66.93 E-value=14 Score=33.53 Aligned_cols=75 Identities=11% Similarity=0.094 Sum_probs=57.6
Q ss_pred CCCcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccC
Q 037461 647 TKEDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQL 726 (1077)
Q Consensus 647 ~~~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el 726 (1077)
....+.||+|..+- + + .+-|..+.+|.+|...|.+..|+|++..-.+|. + ..++...++....|
T Consensus 14 ~~~~m~I~Vk~~~g---~--~--~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~------G---k~L~D~~tL~~~gi 77 (106)
T 1wx7_A 14 DPHLIKVTVKTPKD---K--E--DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA------G---KILKDPDSLAQCGV 77 (106)
T ss_dssp CSSEEEEEEECSSC---E--E--EEEEETTCCHHHHHHHHHHHHTCCTTTEEEEET------T---EECCTTSCHHHHTC
T ss_pred CCceEEEEEEeCCC---c--E--EEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC------C---EECCCcCcHHHcCC
Confidence 34568899998642 2 2 467889999999999999999999887766663 2 12455678888899
Q ss_pred CCCCEEEEEec
Q 037461 727 EDGDIICFQKS 737 (1077)
Q Consensus 727 ~~GdIi~fQ~~ 737 (1077)
.+|++|..-..
T Consensus 78 ~~g~~i~l~~~ 88 (106)
T 1wx7_A 78 RDGLTVHLVIK 88 (106)
T ss_dssp CTTEEEEEEEC
T ss_pred CCCCEEEEEEc
Confidence 99999887755
No 69
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=66.84 E-value=4.2 Score=36.63 Aligned_cols=72 Identities=19% Similarity=0.227 Sum_probs=54.9
Q ss_pred CCcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCC
Q 037461 648 KEDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLE 727 (1077)
Q Consensus 648 ~~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~ 727 (1077)
+..|.|-++ + .. ..-++-|.++.++.-|+...+++.|+++++-.-+|... .|.+..|=...+++
T Consensus 19 ~~~IniKV~--~-~g----~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~---------rI~~~~TP~~L~me 82 (95)
T 2l76_A 19 PRLFPLKIR--C-RA----DLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGET---------ELSPTATPRTLKLG 82 (95)
T ss_dssp CCCEEEEEE--C-SS----SEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTE---------ECCTTSCHHHHTCC
T ss_pred CCeEEEEEE--c-CC----cEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCc---------CCCCCCCHhHcCCC
Confidence 444555555 4 22 34466789999999999999999999999988888754 35666777788999
Q ss_pred CCCEE-EEE
Q 037461 728 DGDII-CFQ 735 (1077)
Q Consensus 728 ~GdIi-~fQ 735 (1077)
+|||| ||+
T Consensus 83 D~DiID~~~ 91 (95)
T 2l76_A 83 VADIIDCVV 91 (95)
T ss_dssp SSCEEEEEE
T ss_pred CCCEEEEEE
Confidence 99999 443
No 70
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=66.64 E-value=8.6 Score=33.39 Aligned_cols=74 Identities=11% Similarity=0.184 Sum_probs=56.0
Q ss_pred CcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCC
Q 037461 649 EDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLED 728 (1077)
Q Consensus 649 ~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~ 728 (1077)
..+-||+|..+- +++ .+-|+.+.+|.+|...|.+..|+|++..-.+|.- ..++...++....+.+
T Consensus 6 ~~m~i~Vk~~~g--~~~----~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~G---------k~L~d~~tL~~~~i~~ 70 (87)
T 1wh3_A 6 SGIQVFVKNPDG--GSY----AYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQG---------QVLQDWLGLGIYGIQD 70 (87)
T ss_dssp SSEEEEEEETTT--EEE----EEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETT---------EECCSSSBHHHHTCCT
T ss_pred CCEEEEEEcCCC--CEE----EEEeCCCChHHHHHHHHHHHhCCChHHEEEEECC---------EEccCCCCHHHCCCCC
Confidence 357888887653 222 3567899999999999999999999888766631 2345567898889999
Q ss_pred CCEEEEEec
Q 037461 729 GDIICFQKS 737 (1077)
Q Consensus 729 GdIi~fQ~~ 737 (1077)
|+.|..-..
T Consensus 71 g~~i~l~~~ 79 (87)
T 1wh3_A 71 SDTLILSKK 79 (87)
T ss_dssp TEEEEEEEC
T ss_pred CCEEEEEEe
Confidence 998877654
No 71
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=66.61 E-value=6.6 Score=32.87 Aligned_cols=69 Identities=14% Similarity=0.253 Sum_probs=50.6
Q ss_pred EEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCCCEE
Q 037461 653 LFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDII 732 (1077)
Q Consensus 653 ~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~GdIi 732 (1077)
||+|..+-. ++ .+-++.+.+|.+|...|.+..|+|++..-.+|. + ..++...++....+.+|+.|
T Consensus 3 i~vk~~~g~--~~----~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~------g---~~L~d~~tL~~~~i~~g~~i 67 (76)
T 1ndd_A 3 IKVKTLTGK--EI----EIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS------G---KQMNDEKTAADYKILGGSVL 67 (76)
T ss_dssp EEEECTTSC--EE----EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET------T---EECCTTSBGGGGTCCTTCEE
T ss_pred EEEECCCCC--EE----EEEECCCChHHHHHHHHHHHHCcChHHEEEEEC------C---EECCCCCcHHHcCCCCCCEE
Confidence 566654432 22 345788999999999999999999887666653 2 23455678998999999998
Q ss_pred EEEe
Q 037461 733 CFQK 736 (1077)
Q Consensus 733 ~fQ~ 736 (1077)
..-.
T Consensus 68 ~l~~ 71 (76)
T 1ndd_A 68 HLVL 71 (76)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7654
No 72
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=66.57 E-value=11 Score=39.63 Aligned_cols=67 Identities=9% Similarity=0.191 Sum_probs=53.3
Q ss_pred EEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccc-cccccccccCCCCCEEEEEecCC
Q 037461 670 RLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIE-KRCTFRASQLEDGDIICFQKSTP 739 (1077)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~-~~~tf~~~el~~GdIi~fQ~~~~ 739 (1077)
.+.+++..++.+|...+++++++|+++++.||-=.. .+.. +.+. ...|+..+.|++|+-|+.+....
T Consensus 155 ~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~--~~~~-~~L~~~~~tl~d~~L~~~Q~illE~r~~ 222 (231)
T 3jyu_A 155 SCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYM--SNTY-EQLSKLDNTIQDAGLYQGQVLVIEPQNE 222 (231)
T ss_dssp EEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSS--SSSC-EECCCTTSBTTTTTCCTTEEEEEEECCT
T ss_pred EEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecC--CCCH-hhhcCCCCCHHHhCCCCCCEEEEEEecC
Confidence 456789999999999999999999999999887431 2222 4444 45899999999999999998753
No 73
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=66.01 E-value=6.3 Score=34.49 Aligned_cols=30 Identities=30% Similarity=0.484 Sum_probs=28.1
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDE 1006 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~ 1006 (1077)
|-.|.+.+.+.+|..++|++|+++.|++..
T Consensus 20 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~ 49 (84)
T 2kk8_A 20 GSSFELEVDYRDTLLVVKQKIERSQHIPVS 49 (84)
T ss_dssp SCEEEEEECTTSBHHHHHHHHHHHHTCCGG
T ss_pred CcEEEEEECCCChHHHHHHHHHHHHCcChH
Confidence 889999999999999999999999999853
No 74
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=65.90 E-value=14 Score=32.45 Aligned_cols=73 Identities=11% Similarity=0.115 Sum_probs=55.3
Q ss_pred cEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCC
Q 037461 650 DILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDG 729 (1077)
Q Consensus 650 ~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~G 729 (1077)
.+.||+|..+- +++ .+-|+.+.+|.+|...|.+..|+|++..-.+|. + ..++...++....+.+|
T Consensus 4 ~m~I~Vk~~~g--~~~----~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~------G---k~L~D~~tL~~~~I~~g 68 (88)
T 2hj8_A 4 PLSILVRNNKG--RSS----TYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE------G---KPLEDQLPLGEYGLKPL 68 (88)
T ss_dssp EEEEEEEETTS--CEE----EEEEESSSBHHHHHHHHHHHTCSCTTTEEEESS------S---SCCCTTSBHHHHHCSTT
T ss_pred cEEEEEECCCC--CEE----EEEECCCCcHHHHHHHHHHHhCCChhHEEEEEC------C---EECCCCCcHHHcCCCCC
Confidence 36778887653 232 346789999999999999999999988876663 2 23456688998999999
Q ss_pred CEEEEEec
Q 037461 730 DIICFQKS 737 (1077)
Q Consensus 730 dIi~fQ~~ 737 (1077)
+.|..-..
T Consensus 69 ~~i~l~~~ 76 (88)
T 2hj8_A 69 STVFMNLR 76 (88)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEEE
Confidence 98877654
No 75
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=65.60 E-value=7.6 Score=34.27 Aligned_cols=67 Identities=16% Similarity=0.198 Sum_probs=43.5
Q ss_pred EEEEEEcCCCCeEEEEEEEcCCCCCHHHHHHHHhhccccCCCCccEEEEEEeccE-EEEecCCccccccc
Q 037461 863 LKVAFHHATKDEVSVHTIRLPKQSTVGDVINDLKTKVELSQPDAELRLLEVFYHK-IYKIFPLNEKIENI 931 (1077)
Q Consensus 863 ~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~~~~~~~~lRl~ev~~~k-i~~~~~~~~~i~~i 931 (1077)
|+|........ ...++..++++.||.+|-++++.+.|.+++..+|-+.. ..++ .-+++..+..+.+-
T Consensus 3 V~v~iths~~~-~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~-~~~~~~g~~l~d~~tL~~Y 70 (86)
T 4b6w_A 3 VKVSLTHSASR-MRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLID-DRGITIEKNMANDKQLGYY 70 (86)
T ss_dssp EEEEEEETTCS-CCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEEC-TTSCEEESSCCTTSBGGGG
T ss_pred EEEEEEEcCCC-CeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEec-CCCCceeeEcCCCCCHHHC
Confidence 55666544433 23567899999999999999999999987663333322 2233 34556666666553
No 76
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=65.39 E-value=16 Score=38.41 Aligned_cols=66 Identities=17% Similarity=0.233 Sum_probs=47.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhccccCCCCccEEEEEEecc-EEEEecCCccccccccc-ccceEEeeec
Q 037461 877 VHTIRLPKQSTVGDVINDLKTKVELSQPDAELRLLEVFYH-KIYKIFPLNEKIENIND-QYWTLRAEEI 943 (1077)
Q Consensus 877 ~~~~~v~k~~tv~dll~~l~~~~~~~~~~~~lRl~ev~~~-ki~~~~~~~~~i~~i~~-~~~~~~~E~i 943 (1077)
.+++.+.|..||.+|++.+++.++++.+ .++|||...+. +...+.+.+.++.+.+= ....+.+|+=
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~-~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r 220 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIPAE-RETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQ 220 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCCTT-SCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEEC
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCCCC-CeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEe
Confidence 4678899999999999999999998653 47999998754 45444455677766532 1235666653
No 77
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=64.59 E-value=13 Score=33.04 Aligned_cols=74 Identities=8% Similarity=0.139 Sum_probs=56.4
Q ss_pred CCcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCC
Q 037461 648 KEDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLE 727 (1077)
Q Consensus 648 ~~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~ 727 (1077)
...+-||+|.- .+++ .+-|..+.+|.+|...|.+..|+|++..-.+|. + ..++...++....+.
T Consensus 15 ~~~m~i~Vk~~---g~~~----~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~------G---k~L~D~~tL~~~gi~ 78 (96)
T 1wx8_A 15 SRIIRVSVKTP---QDCH----EFFLAENSNVRRFKKQISKYLHCNADRLVLIFT------G---KILRDQDILSQRGIL 78 (96)
T ss_dssp SCEEEEEEECS---SSEE----EEEEETTCCHHHHHHHHHHHTCSCTTTBCCEET------T---EECCTTSCHHHHTCC
T ss_pred CCcEEEEEEEC---CeEE----EEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC------C---EECCCcCCHHHCCCC
Confidence 45688999985 3443 456889999999999999999999988766663 2 124556788888999
Q ss_pred CCCEEEEEec
Q 037461 728 DGDIICFQKS 737 (1077)
Q Consensus 728 ~GdIi~fQ~~ 737 (1077)
+|++|..-..
T Consensus 79 ~g~~i~l~~~ 88 (96)
T 1wx8_A 79 DGSTVHVVVR 88 (96)
T ss_dssp TTEEEECCBC
T ss_pred CCCEEEEEEe
Confidence 9999876443
No 78
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=64.48 E-value=8.4 Score=35.13 Aligned_cols=70 Identities=7% Similarity=-0.035 Sum_probs=53.9
Q ss_pred CcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCC
Q 037461 649 EDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLED 728 (1077)
Q Consensus 649 ~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~ 728 (1077)
..+-||+|--.- +++. +-|..+.+|.+|...|.+..|+|++..-..|. + ..++...|+....|++
T Consensus 27 ~mm~I~VKtl~G--k~i~----lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~------G---k~L~D~~TL~dygI~~ 91 (100)
T 1uh6_A 27 TMIEVVCNDRLG--KKVR----VKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKW------Y---TIFKDHVSLGDYEIHD 91 (100)
T ss_dssp CEEEEEEECSSS--SCEE----EEEETTSBHHHHHHHHHHHHCCCGGGCEEEET------T---EECCSSCBHHHHTCCT
T ss_pred CeEEEEEECCCC--CEEE----EEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEC------C---EECCCCCCHHHcCCCC
Confidence 348899995543 3443 56889999999999999999999888876665 2 2346678999899999
Q ss_pred CCEEE
Q 037461 729 GDIIC 733 (1077)
Q Consensus 729 GdIi~ 733 (1077)
|+.|.
T Consensus 92 gstlh 96 (100)
T 1uh6_A 92 GMNLE 96 (100)
T ss_dssp TEEEE
T ss_pred CCEEE
Confidence 98764
No 79
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=64.29 E-value=7.6 Score=34.14 Aligned_cols=71 Identities=15% Similarity=0.270 Sum_probs=53.9
Q ss_pred EEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCCCE
Q 037461 652 LLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDI 731 (1077)
Q Consensus 652 ~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~GdI 731 (1077)
-||+|..+-. ++ .+-|..+.+|.+|...|.+..|+|++..-.+|. + ..++...++....+.+|+.
T Consensus 2 ~I~Vk~~~g~--~~----~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~------G---k~L~D~~tL~~~~i~~g~~ 66 (88)
T 4fbj_B 2 LIKVKTLTGK--EI----EIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS------G---KQMNDEKTAADYKILGGSV 66 (88)
T ss_dssp EEEEEETTCC--EE----EEECCTTCBHHHHHHHHHHHHCCCGGGCEEEET------T---EECCTTSBTTTTTCCTTCE
T ss_pred EEEEEcCCCC--EE----EEEECCCCCHHHHHHHHHHHHCcChhHEEEEEC------C---eECCCCCcHHHcCCCCCCE
Confidence 4677766533 22 246788999999999999999999988876663 2 2345577999999999999
Q ss_pred EEEEec
Q 037461 732 ICFQKS 737 (1077)
Q Consensus 732 i~fQ~~ 737 (1077)
|..-..
T Consensus 67 l~l~~r 72 (88)
T 4fbj_B 67 LHLVLA 72 (88)
T ss_dssp EEEECB
T ss_pred EEEEEE
Confidence 887655
No 80
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=63.32 E-value=19 Score=34.06 Aligned_cols=75 Identities=12% Similarity=0.115 Sum_probs=56.9
Q ss_pred CCcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCC
Q 037461 648 KEDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLE 727 (1077)
Q Consensus 648 ~~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~ 727 (1077)
...+.||+|.- .+++ .+-|..+.+|.+|...|.+..|+|++..-.+|. +. .++...++....|.
T Consensus 30 ~~~m~I~Vk~~---g~~~----~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~------Gk---~L~D~~tL~dygI~ 93 (125)
T 1j8c_A 30 PKIIKVTVKTP---KEKE----EFAVPENSSVQQFKEAISKRFKSQTDQLVLIFA------GK---ILKDQDTLIQHGIH 93 (125)
T ss_dssp CCCEEEEEECS---SCEE----EEEECTTCCHHHHHHHHHHHHCSCSSSEEEEET------TE---EESTTSCGGGTTCS
T ss_pred CCcEEEEEEeC---CeEE----EEEECCCCcHHHHHHHHHHHHCcCcceEEEEEC------CE---EcCCCCCHHHcCCC
Confidence 34589999986 3332 356889999999999999999999988766663 21 23456789989999
Q ss_pred CCCEEEEEecC
Q 037461 728 DGDIICFQKST 738 (1077)
Q Consensus 728 ~GdIi~fQ~~~ 738 (1077)
+|++|.+-...
T Consensus 94 ~gstI~lv~~~ 104 (125)
T 1j8c_A 94 DGLTVHLVIKR 104 (125)
T ss_dssp SSEEEEEEEC-
T ss_pred CCCEEEEEecc
Confidence 99998776553
No 81
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=63.12 E-value=15 Score=32.33 Aligned_cols=61 Identities=7% Similarity=-0.118 Sum_probs=47.2
Q ss_pred EEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcc-cccccccccccccccCCCCCEEEE
Q 037461 671 LFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSV-MCEPIEKRCTFRASQLEDGDIICF 734 (1077)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~-~ie~i~~~~tf~~~el~~GdIi~f 734 (1077)
.-++++.+|.+|...|.++.|+|++..-..|..- .+. ....++...++....+++|.+|-.
T Consensus 19 ~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~---~~~~~g~~l~d~~tL~~Y~i~~g~~ihl 80 (86)
T 4b6w_A 19 KRYGLAQTIESIKENVFTHFATPPEYMQLQLIDD---RGITIEKNMANDKQLGYYQCRDEFVIHV 80 (86)
T ss_dssp EEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECT---TSCEEESSCCTTSBGGGGTCCTTCEEEE
T ss_pred EEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecC---CCCceeeEcCCCCCHHHCCCCCCCEEEE
Confidence 4578999999999999999999999997666521 111 123466678999999999999944
No 82
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=63.05 E-value=17 Score=32.87 Aligned_cols=76 Identities=16% Similarity=0.233 Sum_probs=53.9
Q ss_pred EEEEEeeeCC--CCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccc-cccccccCC
Q 037461 651 ILLFFKLYDP--EKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKR-CTFRASQLE 727 (1077)
Q Consensus 651 ~~~f~k~~d~--~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~-~tf~~~el~ 727 (1077)
+-|++|.-.- ..+++. +-|..+.+|.+|...|.+..|+|++..-.+|.-- .++.. .|+....|.
T Consensus 8 m~I~Vk~~~~~~~~~~~~----i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk---------~L~D~~~tL~~ygI~ 74 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFS----LQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQ---------LLTDDHCSLGSYGLK 74 (102)
T ss_dssp EEEEEEECCCCCCCCEEE----EEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTE---------EECCSSSBHHHHTCC
T ss_pred EEEEEEECCCCcCceEEE----EEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCE---------ECCCCcccHHHCCCC
Confidence 5566665422 112222 4678999999999999999999998876666421 23333 588888999
Q ss_pred CCCEEEEEecCC
Q 037461 728 DGDIICFQKSTP 739 (1077)
Q Consensus 728 ~GdIi~fQ~~~~ 739 (1077)
+|+.|.+-....
T Consensus 75 ~g~~l~l~~~~~ 86 (102)
T 1v5o_A 75 DGDMVVLLQKDN 86 (102)
T ss_dssp TTEEEEECBCCC
T ss_pred CCCEEEEEECCC
Confidence 999998876643
No 83
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=62.27 E-value=15 Score=33.17 Aligned_cols=73 Identities=11% Similarity=0.143 Sum_probs=55.3
Q ss_pred CcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCC
Q 037461 649 EDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLED 728 (1077)
Q Consensus 649 ~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~ 728 (1077)
..+.||+|.- .+++ .+-|..+.+|.+|...|.+..|+|++..-.+|. + ..++...++....+.+
T Consensus 24 ~~m~I~Vk~~---g~~~----~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~------G---k~L~D~~tL~~~gI~~ 87 (101)
T 2klc_A 24 KIMKVTVKTP---KEKE----EFAVPENSSVQQFKEEISKRFKSHTDQLVLIFA------G---KILKDQDTLSQHGIHD 87 (101)
T ss_dssp CCEEEEEECS---SCEE----EEEECSCCCHHHHHHHHHHHHTCCGGGEEEEET------T---EEECTTCCTGGGTCCT
T ss_pred CeEEEEEEeC---CcEE----EEEECCCCCHHHHHHHHHHHHCcChhhEEEEEC------C---EECCCcCcHHHcCCCC
Confidence 4588999875 2332 356789999999999999999999887766663 2 1245567898899999
Q ss_pred CCEEEEEec
Q 037461 729 GDIICFQKS 737 (1077)
Q Consensus 729 GdIi~fQ~~ 737 (1077)
|+.|..-..
T Consensus 88 g~~I~l~~~ 96 (101)
T 2klc_A 88 GLTVHLVIK 96 (101)
T ss_dssp TCEEEEEEC
T ss_pred CCEEEEEEc
Confidence 998876543
No 84
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=61.32 E-value=9.6 Score=32.72 Aligned_cols=46 Identities=24% Similarity=0.490 Sum_probs=35.2
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCccc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDI 1029 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~~ 1029 (1077)
|-.|.+.+.+..|..++|++|++++|++.... | ++..+ +-|+|+..
T Consensus 13 g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q---r--L~~~g--~~L~d~~t 58 (85)
T 3mtn_B 13 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ---R--LIFAG--KQLEDGRT 58 (85)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGC---E--EEETT--EECCTTSB
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCcChHHE---E--EEECC--EECCCCCC
Confidence 77899999999999999999999999987553 3 33333 44666543
No 85
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=61.17 E-value=17 Score=32.80 Aligned_cols=74 Identities=11% Similarity=0.095 Sum_probs=57.0
Q ss_pred CCcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCC
Q 037461 648 KEDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLE 727 (1077)
Q Consensus 648 ~~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~ 727 (1077)
...+-||+|.-+- + + .+-|..+.+|.+|...|.+..|+|++..-.+|. + ..++...++....+.
T Consensus 20 ~~~m~I~Vk~~~g---~--~--~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~------G---k~L~D~~tL~~ygI~ 83 (100)
T 1yqb_A 20 PHLIKVTVKTPKD---K--E--DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA------G---KILKDPDSLAQCGVR 83 (100)
T ss_dssp TTEEEEEEECSSC---E--E--EEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET------T---EECCTTSBHHHHTCC
T ss_pred CCeEEEEEEcCCC---c--E--EEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC------C---EECCCcCcHHHCCCC
Confidence 4568899998542 2 2 467889999999999999999999887766663 2 124556789888999
Q ss_pred CCCEEEEEec
Q 037461 728 DGDIICFQKS 737 (1077)
Q Consensus 728 ~GdIi~fQ~~ 737 (1077)
+|+.|..-..
T Consensus 84 ~gstI~l~~r 93 (100)
T 1yqb_A 84 DGLTVHLVIK 93 (100)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEc
Confidence 9999877654
No 86
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=60.61 E-value=9.9 Score=32.37 Aligned_cols=46 Identities=17% Similarity=0.150 Sum_probs=35.2
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCccc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDI 1029 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~~ 1029 (1077)
|-.|.+.+.+..|..++|++|+++.|+|... .++ +..+ +-|+|+..
T Consensus 14 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~---qrL--~~~G--~~L~d~~t 59 (79)
T 3phx_B 14 GRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL---FWL--TFEG--KPLEDQLP 59 (79)
T ss_dssp SCEEEEEECTTSBHHHHHHHHHHHHTCCGGG---EEE--EETT--EECCTTSB
T ss_pred CCEEEEEECCcChHHHHHHHHHhhcCCCHHH---EEE--EECC--EECCCCCc
Confidence 7789999999999999999999999998654 233 3333 34666543
No 87
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=60.55 E-value=22 Score=32.71 Aligned_cols=74 Identities=14% Similarity=0.241 Sum_probs=56.0
Q ss_pred CCcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCC
Q 037461 648 KEDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLE 727 (1077)
Q Consensus 648 ~~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~ 727 (1077)
...+.||+|..+- +++ .+-|..+.+|.+|...|.+..|+|++..-.+|. + ..++...++....+.
T Consensus 33 ~~~m~I~Vk~~~g--~~~----~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~------G---k~L~D~~tL~~~gI~ 97 (111)
T 2ojr_A 33 LLAMQIFVKTLTG--KTI----TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNIQ 97 (111)
T ss_dssp SSCEEEEEECSSS--CEE----EEEECTTCBHHHHHHHHHHHHCCCTTTEEEEET------T---EECCSSCBTTTTTCC
T ss_pred CCeEEEEEEcCCC--CEE----EEEeCCCCCHHHHHHHHHHHHCcCcccEEEEEC------C---EECCCCCcHHHcCCC
Confidence 3468899996543 232 356789999999999999999999988766663 1 124556789889999
Q ss_pred CCCEEEEEe
Q 037461 728 DGDIICFQK 736 (1077)
Q Consensus 728 ~GdIi~fQ~ 736 (1077)
+|+.|.+-.
T Consensus 98 ~gs~I~l~~ 106 (111)
T 2ojr_A 98 KESTLHLVL 106 (111)
T ss_dssp TTCEEEEEE
T ss_pred CCCEEEEEE
Confidence 999887654
No 88
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=60.38 E-value=8.6 Score=34.23 Aligned_cols=71 Identities=17% Similarity=0.286 Sum_probs=53.2
Q ss_pred CcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCC
Q 037461 649 EDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLED 728 (1077)
Q Consensus 649 ~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~ 728 (1077)
..+-||+|. .+++ .+-|+.+.+|.+|...|.+..|+|++..-.+|. + ..++...++....+.+
T Consensus 18 ~~m~I~Vk~----g~~~----~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~------G---k~L~D~~tL~~y~I~~ 80 (93)
T 2l7r_A 18 GSMQLFVRA----QELH----TFEVTGQETVAQIKAHVASLEGIAPEDQVVLLA------G---APLEDEATLGQCGVEA 80 (93)
T ss_dssp --CEEEEES----SSEE----EEECCSSCBHHHHHHHHHHHHTCCGGGCEEEET------T---EECCTTSBHHHHTCCS
T ss_pred CcEEEEEEC----CCEE----EEEeCCCCcHHHHHHHHHHHhCcChhHEEEEEC------C---EECCCCCcHHHCCCCC
Confidence 347889996 2333 346788999999999999999999888766664 2 2345567898889999
Q ss_pred CCEEEEEe
Q 037461 729 GDIICFQK 736 (1077)
Q Consensus 729 GdIi~fQ~ 736 (1077)
|+.|..-.
T Consensus 81 gstI~lv~ 88 (93)
T 2l7r_A 81 LTTLEVAG 88 (93)
T ss_dssp SCEEEEEC
T ss_pred CCEEEEEE
Confidence 99887643
No 89
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=59.97 E-value=16 Score=33.32 Aligned_cols=76 Identities=17% Similarity=0.314 Sum_probs=57.9
Q ss_pred CCCcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccC
Q 037461 647 TKEDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQL 726 (1077)
Q Consensus 647 ~~~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el 726 (1077)
....+-||+|..+-. ++ .+-|..+.+|.+|...|.+..|+|++..-.+|. + ..++...++....+
T Consensus 20 ~~~~m~I~Vk~~~g~--~~----~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~------G---k~L~D~~tL~~ygI 84 (106)
T 1ttn_A 20 SGYECQLRLRLSTGK--DL----KLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFS------G---RPLTDKMKFEELKI 84 (106)
T ss_dssp -CCSEEEEEEETTTE--EE----EEEECTTSHHHHHHHHHHHTTCCCSTTCEEEET------T---EECCTTSHHHHCCC
T ss_pred CCCeEEEEEEcCCCC--EE----EEEeCCCCcHHHHHHHHHHHHCcCcccEEEEEC------C---EECCCCCcHHHcCC
Confidence 445688999987642 22 256789999999999999999999988876663 2 23455678988999
Q ss_pred CCCCEEEEEec
Q 037461 727 EDGDIICFQKS 737 (1077)
Q Consensus 727 ~~GdIi~fQ~~ 737 (1077)
.+|+.|..-..
T Consensus 85 ~~g~ti~lv~~ 95 (106)
T 1ttn_A 85 PKDYVVQVIVS 95 (106)
T ss_dssp SSSCEEEEECC
T ss_pred CCCCEEEEEEe
Confidence 99999887654
No 90
>2c5l_C Phosphoinositide-specific phospholipase C PLC-epsilon; signaling protein/complex, RAS, ubiquitin superfold, oncogene, GTP-binding; HET: GTP; 1.9A {Homo sapiens} SCOP: d.15.1.5 PDB: 2byf_A
Probab=59.83 E-value=42 Score=31.35 Aligned_cols=71 Identities=23% Similarity=0.301 Sum_probs=50.0
Q ss_pred cceEEEEEEcCCCCeEEEEEEEcCCCCCHHHHHHHHhhccccC-----CC-CccEEEEEEec-----------cEEEEec
Q 037461 860 LKTLKVAFHHATKDEVSVHTIRLPKQSTVGDVINDLKTKVELS-----QP-DAELRLLEVFY-----------HKIYKIF 922 (1077)
Q Consensus 860 ~k~~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~~~-----~~-~~~lRl~ev~~-----------~ki~~~~ 922 (1077)
-+++.|.-++-.-.. ---.|.+++.+|+.||+.++..+++.+ .+ -...+|.|+.. +-..+++
T Consensus 5 ~~tf~v~V~~v~p~~-py~iv~vt~~STAqdvI~eaL~kag~~~~~~~~~~~~dYvLvEev~~~~~~k~~~~~~~~~RVL 83 (117)
T 2c5l_C 5 EESFFVQVHDVSPEQ-PRTVIKAPRVSTAQDVIQQTLCKAKYSLSILSNPNPSDYVLLEEVVKDTTNKKTTTPKSSQRVL 83 (117)
T ss_dssp CCEEEEEEESCCSSC-CEEEEEEETTCBHHHHHHHHHHHTTTSHHHHHSCCGGGEEEEEEEECC---------CEEEEEC
T ss_pred CceEEEEEecCCCCC-CeEEEEeCCCCcHHHHHHHHHHHcCCccccccCCCchHeEEEEEEcccCCCccccccCceEEec
Confidence 356666666654332 233789999999999999999998876 43 46899999862 2566777
Q ss_pred CCccccccc
Q 037461 923 PLNEKIENI 931 (1077)
Q Consensus 923 ~~~~~i~~i 931 (1077)
.+++.+-.+
T Consensus 84 ~~~E~~l~~ 92 (117)
T 2c5l_C 84 LDQECVFQA 92 (117)
T ss_dssp CTTSBHHHH
T ss_pred CCCCCHHHH
Confidence 766655443
No 91
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=59.10 E-value=8.5 Score=32.80 Aligned_cols=45 Identities=18% Similarity=0.309 Sum_probs=34.9
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCcc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTD 1028 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~ 1028 (1077)
|-.|.|.|.+.+|+.++|++|+++.|++.. +.+| +..++ -|+|+.
T Consensus 13 g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~---~qrL--~~~G~--~L~d~~ 57 (79)
T 2uyz_B 13 SSEIHFKVKMTTHLKKLKESYCQRQGVPMN---SLRF--LFEGQ--RIADNH 57 (79)
T ss_dssp CCEEEEEEETTSCTHHHHHHHHHHHTCCGG---GEEE--EETTE--ECCTTC
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCCCcc---cEEE--EECCE--EeCCCC
Confidence 778999999999999999999999999864 4454 33443 355554
No 92
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=58.90 E-value=13 Score=32.36 Aligned_cols=72 Identities=10% Similarity=0.057 Sum_probs=54.1
Q ss_pred CcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccc-cccccccccccCC
Q 037461 649 EDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEP-IEKRCTFRASQLE 727 (1077)
Q Consensus 649 ~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~-i~~~~tf~~~el~ 727 (1077)
...-||+|...-.+-+ +-|+.+.+|.+|...|.+..|+|++..-.+|. + .. ++...++....+.
T Consensus 9 ~~~~i~vk~l~g~~~~------l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~------G---k~lL~D~~tL~~y~I~ 73 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFE------LEVDYRDTLLVVKQKIERSQHIPVSKQTLIVD------G---IVILREDLTVEQCQIV 73 (84)
T ss_dssp CCEEEEEEETTSCEEE------EEECTTSBHHHHHHHHHHHHTCCGGGEEEEET------T---EECCCSSSBHHHHTCC
T ss_pred CceEEEEEecCCcEEE------EEECCCChHHHHHHHHHHHHCcChHHEEEEEC------C---EEecCCcCCHHHcCCC
Confidence 3467788877654322 35789999999999999999999988766663 2 12 4556788888999
Q ss_pred CCCEEEEE
Q 037461 728 DGDIICFQ 735 (1077)
Q Consensus 728 ~GdIi~fQ 735 (1077)
+|+.|..-
T Consensus 74 ~gs~i~lv 81 (84)
T 2kk8_A 74 PTSDIQLE 81 (84)
T ss_dssp TTSCEEEE
T ss_pred CCCEEEEE
Confidence 99988654
No 93
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=58.79 E-value=11 Score=33.05 Aligned_cols=71 Identities=13% Similarity=0.243 Sum_probs=51.9
Q ss_pred EEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCCC
Q 037461 651 ILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGD 730 (1077)
Q Consensus 651 ~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~Gd 730 (1077)
.-+|+|-.+-.+- .+-|+.+.+|++|...|.+..|+|++..-.+|. + ..++...|+....+.+|+
T Consensus 10 ~~i~v~~~~G~~~------~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~------G---k~L~D~~tL~~~gi~~g~ 74 (88)
T 1sif_A 10 LQLFIKTLTGKTF------TVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNIQKES 74 (88)
T ss_dssp CEEEEEETTSCEE------EEECCTTSBHHHHHHHHHHHHCCCGGGCEEEET------T---EECCTTSBSGGGTCCTTC
T ss_pred eEEEEEeCCCCEE------EEEECCCChHHHHHHHHHHHHCcChhhEEEEEC------C---EECCCCCcHHHcCCCCCC
Confidence 3466666555322 234778999999999999999999887766663 2 124456789989999999
Q ss_pred EEEEEe
Q 037461 731 IICFQK 736 (1077)
Q Consensus 731 Ii~fQ~ 736 (1077)
.|..-.
T Consensus 75 ~i~l~~ 80 (88)
T 1sif_A 75 TLHLVL 80 (88)
T ss_dssp EEEEEC
T ss_pred EEEEEE
Confidence 887654
No 94
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=58.71 E-value=9.1 Score=32.00 Aligned_cols=45 Identities=22% Similarity=0.443 Sum_probs=34.4
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCcc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTD 1028 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~ 1028 (1077)
|-+|.+.+.+..|..++|++|++++|++.. +.++ +.. ++.|+|+.
T Consensus 10 g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~---~q~L--~~~--g~~L~d~~ 54 (76)
T 3a9j_A 10 GKTITLEVEPSDTIENVKAKIQDKEGIPPD---QQRL--IFA--GKQLEDGR 54 (76)
T ss_dssp SCEEEEECCTTCBHHHHHHHHHHHHCCCGG---GEEE--EET--TEECCTTC
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCcCHH---HeEE--EEC--CeECCCCC
Confidence 778899999999999999999999999853 3444 333 34466643
No 95
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=58.64 E-value=8.7 Score=35.18 Aligned_cols=71 Identities=24% Similarity=0.314 Sum_probs=53.4
Q ss_pred EEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCCCE
Q 037461 652 LLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDI 731 (1077)
Q Consensus 652 ~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~GdI 731 (1077)
-||+|..+-.+ + .+-|..+.+|.+|...|.+..|+|++..-.+|. + ..++...++....|.+|+.
T Consensus 3 ~I~Vk~~~g~~--~----~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~------G---k~L~D~~tL~~~~i~~g~~ 67 (106)
T 3m62_B 3 SLTFKNFKKEK--V----PLDLEPSNTILETKTKLAQSISCEESQIKLIYS------G---KVLQDSKTVSECGLKDGDQ 67 (106)
T ss_dssp CEEEECTTCCE--E----EECCCTTSBHHHHHHHHHHTTTSCGGGCEEEET------T---EECCTTSBTTTTTCCTTCE
T ss_pred EEEEEeCCCCE--E----EEEECCCCcHHHHHHHHHHHHCCChhhEEEEEC------C---EECCCcCCHHHcCCCCCCE
Confidence 46777655432 2 234788999999999999999999888766663 2 2345568899899999999
Q ss_pred EEEEec
Q 037461 732 ICFQKS 737 (1077)
Q Consensus 732 i~fQ~~ 737 (1077)
|..-..
T Consensus 68 i~lv~~ 73 (106)
T 3m62_B 68 VVFMVS 73 (106)
T ss_dssp EEEECC
T ss_pred EEEEEc
Confidence 888755
No 96
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=58.56 E-value=14 Score=32.38 Aligned_cols=73 Identities=10% Similarity=0.246 Sum_probs=54.8
Q ss_pred CcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCC
Q 037461 649 EDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLED 728 (1077)
Q Consensus 649 ~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~ 728 (1077)
..+-||+|..+-.+ + .+-|..+.+|.+|...|.+..|+|++..-.+|. + ..++...++....| +
T Consensus 4 ~~m~i~Vk~~~g~~--~----~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~------G---k~L~d~~tL~~~~i-~ 67 (90)
T 4dwf_A 4 DSLEVLVKTLDSQT--R----TFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQ------G---RVLQDDKKLQEYNV-G 67 (90)
T ss_dssp CEEEEEEEETTCCE--E----EEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET------T---EECCTTSBGGGGTC-T
T ss_pred cEEEEEEEcCCCCE--E----EEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC------C---eECCCCCCHHHcCC-C
Confidence 35788998876432 2 246789999999999999999999988766663 2 23455678988889 8
Q ss_pred CCEEEEEec
Q 037461 729 GDIICFQKS 737 (1077)
Q Consensus 729 GdIi~fQ~~ 737 (1077)
|++|..-..
T Consensus 68 g~~i~l~~~ 76 (90)
T 4dwf_A 68 GKVIHLVER 76 (90)
T ss_dssp TEEEEEEEC
T ss_pred CcEEEEEec
Confidence 988866544
No 97
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=58.53 E-value=19 Score=31.30 Aligned_cols=70 Identities=10% Similarity=0.258 Sum_probs=52.7
Q ss_pred CcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCC
Q 037461 649 EDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLED 728 (1077)
Q Consensus 649 ~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~ 728 (1077)
..+-||+|..+-.+ + .+-|..+.+|.+|...|.+..|+|++..-.+|. + ..++...++....+ +
T Consensus 16 ~~m~i~Vk~~~g~~--~----~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~------G---k~L~D~~tL~~~~i-~ 79 (88)
T 4eew_A 16 DSLEVLVKTLDSQT--R----TFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQ------G---RVLQDDKKLQEYNV-G 79 (88)
T ss_dssp CEEEEEEEETTSCE--E----EEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET------T---EECCTTSBGGGGTC-T
T ss_pred CeEEEEEEcCCCCE--E----EEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC------C---EECCCCCcHHHcCC-C
Confidence 45889999865432 2 246789999999999999999999988866663 2 23455678888889 8
Q ss_pred CCEEEE
Q 037461 729 GDIICF 734 (1077)
Q Consensus 729 GdIi~f 734 (1077)
|++|-.
T Consensus 80 g~~i~l 85 (88)
T 4eew_A 80 GKVIHL 85 (88)
T ss_dssp TEEEEE
T ss_pred CcEEEE
Confidence 988743
No 98
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=57.74 E-value=23 Score=32.04 Aligned_cols=76 Identities=11% Similarity=0.011 Sum_probs=56.0
Q ss_pred CCcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHH-HHhcCCCCCCcEEEEEEeecCCcccccccccccccccccC
Q 037461 648 KEDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKL-NEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQL 726 (1077)
Q Consensus 648 ~~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el 726 (1077)
...+-||+|.....+-+ -.+-|..+.+|.+|-..| .+.-|+|++..-.+|. + ..++...++....|
T Consensus 17 ~~~m~I~VKtl~g~~~~----i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~------G---k~L~D~~tL~dy~I 83 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFS----IEHDFSPSDTILQIKQHLISEEKASHISEIKLLLK------G---KVLHDNLFLSDLKV 83 (98)
T ss_dssp -CCEEEEEEECSSSCEE----EEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEET------T---EEECTTCBGGGSCC
T ss_pred CCCEEEEEEcCCCCEEE----EEEecCCCChHHHHHHHHHHHhcCCChhhEEEEEC------C---EECcCcCCHHHcCc
Confidence 34588999987766322 233457999999999999 8888999888776763 2 23456678888899
Q ss_pred -CCCCEEEEEe
Q 037461 727 -EDGDIICFQK 736 (1077)
Q Consensus 727 -~~GdIi~fQ~ 736 (1077)
++|+.|..=.
T Consensus 84 ~~~g~ti~lmv 94 (98)
T 4a20_A 84 TPANSTITVMI 94 (98)
T ss_dssp BTTBCEEEEEE
T ss_pred CCCCCEEEEEE
Confidence 9999887643
No 99
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=57.71 E-value=9.7 Score=32.75 Aligned_cols=46 Identities=24% Similarity=0.507 Sum_probs=35.2
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCccc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDI 1029 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~~ 1029 (1077)
|-.|.+.+.+..|+.++|++|++++|++.... | ++..+ +-|+|+..
T Consensus 13 g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~q---r--L~~~g--~~L~d~~t 58 (85)
T 3n3k_B 13 GRTIILEVEPSDTIENVKAKIQDKEGIPPDQQ---R--LIFAG--KQLEDGRT 58 (85)
T ss_dssp GCEEEEECCTTCBHHHHHHHHHHHHCCCGGGE---E--EEETB--EECCTTCB
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCCCHHHE---E--EEECC--eECCCCCC
Confidence 77889999999999999999999999998653 3 33333 34666543
No 100
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=57.54 E-value=34 Score=30.34 Aligned_cols=79 Identities=10% Similarity=0.021 Sum_probs=57.0
Q ss_pred cEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccc-cccccccccccCCC
Q 037461 650 DILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEP-IEKRCTFRASQLED 728 (1077)
Q Consensus 650 ~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~-i~~~~tf~~~el~~ 728 (1077)
++-|++|.=... ....+-+..+.+|.+|...|.++.|+|++..-.+|..- ++..+.. ++...++...-+++
T Consensus 7 ~v~l~I~~~~~~-----~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~---~g~~~~~l~~D~~tL~~y~i~~ 78 (95)
T 1v6e_A 7 GVMVFISSSLNS-----FRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGA---DDKFYSKLDQEDALLGSYPVDD 78 (95)
T ss_dssp CEEEEEEETTSS-----SCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECS---SSCEEEECCCSSSBTTSSSCCT
T ss_pred EEEEEEEECCCC-----eeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCC---CCccccccCCCcCCHhHCCCCC
Confidence 477778763211 23446788999999999999999999999987777641 1111122 35678898889999
Q ss_pred CCEEEEEe
Q 037461 729 GDIICFQK 736 (1077)
Q Consensus 729 GdIi~fQ~ 736 (1077)
|+.|..-.
T Consensus 79 g~~l~v~d 86 (95)
T 1v6e_A 79 GCRIHVID 86 (95)
T ss_dssp TCEEEEBC
T ss_pred CCEEEEEE
Confidence 99987754
No 101
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=57.18 E-value=12 Score=32.95 Aligned_cols=46 Identities=24% Similarity=0.471 Sum_probs=35.3
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCccc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDI 1029 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~~ 1029 (1077)
|-.|.+.+.+..|..++|++|++++|++... .|+ +..+ +-|+|+..
T Consensus 27 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~---qrL--~~~G--k~L~D~~t 72 (91)
T 3v6c_B 27 GTHITLEVEPSDTIENVKAKIQDKEGIPPDQ---QRL--IFAG--KQLEDGRT 72 (91)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGG---CEE--EETT--EECCTTCB
T ss_pred CCEEEEEECCCCCHHHHHHHHHhhhCCChhh---EEE--EECC--eECCCcCc
Confidence 7889999999999999999999999998754 233 3333 34666543
No 102
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=56.79 E-value=20 Score=32.96 Aligned_cols=73 Identities=14% Similarity=0.254 Sum_probs=55.9
Q ss_pred CcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCC
Q 037461 649 EDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLED 728 (1077)
Q Consensus 649 ~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~ 728 (1077)
..+-||+|..+-. ++ .+-|..+.+|.+|...|.+..|+|++..-.+|. + ..++...++....|.+
T Consensus 34 ~~m~I~Vk~~~G~--~~----~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~------G---k~L~D~~tL~~~gI~~ 98 (111)
T 3vdz_A 34 LAMQIFVKTLTGK--TI----TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNIQK 98 (111)
T ss_dssp GCEEEEEECSSSC--EE----EEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET------T---EECCTTSBTTTTTCCT
T ss_pred ccEEEEEEeCCCC--EE----EEEeCCCCCHHHHHHHHHHHhCCChHHEEEEEC------C---EECCCCCcHHHCCCCC
Confidence 4588999987643 22 246789999999999999999999887766663 2 2345567898899999
Q ss_pred CCEEEEEe
Q 037461 729 GDIICFQK 736 (1077)
Q Consensus 729 GdIi~fQ~ 736 (1077)
|+.|..-.
T Consensus 99 gs~I~l~~ 106 (111)
T 3vdz_A 99 ESTLHLVL 106 (111)
T ss_dssp TCEEEEEE
T ss_pred CCEEEEEE
Confidence 99887643
No 103
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=56.61 E-value=30 Score=29.12 Aligned_cols=72 Identities=15% Similarity=0.142 Sum_probs=52.1
Q ss_pred EEEEEeeeCCCCceEEeeeEEE-EecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCC
Q 037461 651 ILLFFKLYDPEKEELRYVGRLF-VKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDG 729 (1077)
Q Consensus 651 ~~~f~k~~d~~~~~l~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~G 729 (1077)
+-||+|.-+-. ++ -.+- |+.+.+|.+|...|.+..|+|++..-.+|. + ..++...++....+.+|
T Consensus 3 m~i~Vk~~~g~--~~---~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~------g---~~L~d~~tL~~~~i~~g 68 (78)
T 2faz_A 3 MWIQVRTMDGR--QT---HTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYR------G---KQMEDGHTLFDYEVRLN 68 (78)
T ss_dssp EEEEEEETTSS--CE---EEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET------T---EECCTTCBTTTTTCCTT
T ss_pred EEEEEEECCCC--EE---EEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEEC------C---EECCCCCCHHHcCCCCC
Confidence 45677765432 21 1244 788999999999999999999887766663 2 23455678998999999
Q ss_pred CEEEEEe
Q 037461 730 DIICFQK 736 (1077)
Q Consensus 730 dIi~fQ~ 736 (1077)
+.|..-.
T Consensus 69 ~~i~l~~ 75 (78)
T 2faz_A 69 DTIQLLV 75 (78)
T ss_dssp CEEEEEE
T ss_pred CEEEEEE
Confidence 9887643
No 104
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=56.38 E-value=18 Score=32.49 Aligned_cols=56 Identities=14% Similarity=0.191 Sum_probs=41.2
Q ss_pred eEEEEEEeeccCccccccccccCcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCcc
Q 037461 955 RLIHVYHFTKETAQNQMQIQNFGEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTD 1028 (1077)
Q Consensus 955 ~~i~v~hf~k~~~~~h~~~~~fGiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~ 1028 (1077)
.+|.| |-|++. |--+.+.+.|..|..++|++|+.+.|++-. +.++ +..++. |.|+.
T Consensus 20 ~mIqI--~Vk~~~---------Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~---qQrL--if~Gk~--LkD~~ 75 (93)
T 3plu_A 20 HMIEV--VVNDRL---------GKKVRVKCLGEDSVGDFKKVLSLQIGTQPN---KIVL--QKGGSV--LKDHI 75 (93)
T ss_dssp CEEEE--EEECTT---------SCEEEEEEETTSBHHHHHHHHHHHHTCCGG---GEEE--EETTEE--CCTTS
T ss_pred ceEEE--EEECCC---------CCEEEEEECCcCHHHHHHHHHHHHhCCCHH---HEEE--EeCCEE--ccCcC
Confidence 44555 456666 888999999999999999999999999874 4443 334433 66643
No 105
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=56.24 E-value=10 Score=33.73 Aligned_cols=46 Identities=22% Similarity=0.230 Sum_probs=34.3
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCccc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDI 1029 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~~ 1029 (1077)
|-.|.+.|.+..|..++|++|+++.|++... .++ +..+ +-|+|+..
T Consensus 27 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~---qrL--i~~G--k~L~D~~t 72 (93)
T 2l7r_A 27 QELHTFEVTGQETVAQIKAHVASLEGIAPED---QVV--LLAG--APLEDEAT 72 (93)
T ss_dssp SSEEEEECCSSCBHHHHHHHHHHHHTCCGGG---CEE--EETT--EECCTTSB
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCcChhH---EEE--EECC--EECCCCCc
Confidence 6678899999999999999999999998543 343 3333 34666543
No 106
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=56.23 E-value=22 Score=30.88 Aligned_cols=75 Identities=13% Similarity=0.137 Sum_probs=55.4
Q ss_pred CcEEEEEeeeCCCCceEEeeeEE-EEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCC
Q 037461 649 EDILLFFKLYDPEKEELRYVGRL-FVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLE 727 (1077)
Q Consensus 649 ~~~~~f~k~~d~~~~~l~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~ 727 (1077)
..+.||+|..+-. +++ .+ -|+.+.+|.+|...|.+..|+|++..-.+|. + ..++...++....+.
T Consensus 6 ~~m~i~Vk~~~g~-~~~----~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~------g---k~L~d~~tL~~~~i~ 71 (89)
T 1wy8_A 6 SGMWIQVRTIDGS-KTC----TIEDVSRKATIEELRERVWALFDVRPECQRLFYR------G---KQLENGYTLFDYDVG 71 (89)
T ss_dssp SCEEEEEEETTCS-CEE----EEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEET------T---EECCSSSBHHHHTCC
T ss_pred CcEEEEEEECCCC-ceE----EEEecCCCCCHHHHHHHHHHHHCcChhhEEEEEC------C---eECCCCCCHHHCCCC
Confidence 4578888876531 122 34 3789999999999999999999988876663 1 234556789888999
Q ss_pred CCCEEEEEec
Q 037461 728 DGDIICFQKS 737 (1077)
Q Consensus 728 ~GdIi~fQ~~ 737 (1077)
+|+.|..-..
T Consensus 72 ~g~~i~l~~~ 81 (89)
T 1wy8_A 72 LNDIIQLLVR 81 (89)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEe
Confidence 9998876544
No 107
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=55.82 E-value=22 Score=30.50 Aligned_cols=73 Identities=5% Similarity=0.188 Sum_probs=54.5
Q ss_pred cEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHh---cCCCCCCcEEEEEEeecCCcccccccccccccccccC
Q 037461 650 DILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEM---AGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQL 726 (1077)
Q Consensus 650 ~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el 726 (1077)
.+-||+|..+-. ++ .+-|..+.+|.+|...|.+. .|+|++..-.+|. + ..++...++....+
T Consensus 5 ~m~i~vk~~~g~--~~----~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~------G---k~L~D~~tL~~~~i 69 (85)
T 2wyq_A 5 AVTITLKTLQQQ--TF----KIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA------G---KILSDDVPIRDYRI 69 (85)
T ss_dssp CEEEEEEETTSC--EE----EEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEET------T---EECCTTSBGGGGCC
T ss_pred eEEEEEEECCCC--EE----EEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEEC------C---EECcCCCCHHHcCC
Confidence 467888876543 22 34678999999999999997 7899887766663 2 23455678999999
Q ss_pred CCCCEEEEEec
Q 037461 727 EDGDIICFQKS 737 (1077)
Q Consensus 727 ~~GdIi~fQ~~ 737 (1077)
.+|+.|.+-..
T Consensus 70 ~~g~~i~l~~~ 80 (85)
T 2wyq_A 70 DEKNFVVVMVT 80 (85)
T ss_dssp CTTSEEEEEEC
T ss_pred CCCCEEEEEEc
Confidence 99999987654
No 108
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=55.80 E-value=11 Score=32.63 Aligned_cols=46 Identities=20% Similarity=0.413 Sum_probs=35.0
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCccc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDI 1029 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~~ 1029 (1077)
|-.|.+.|.+..|..++|++|++++|++.... |+ +..+ +-|+|+..
T Consensus 22 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q---rL--~~~G--~~L~d~~t 67 (88)
T 3dbh_I 22 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQ---RL--IYSG--KQMNDEKT 67 (88)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGC---CE--EETT--EECCTTSB
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCcCHHHE---EE--EECC--eECCCCCc
Confidence 77899999999999999999999999986443 33 3333 34666543
No 109
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=55.79 E-value=11 Score=31.49 Aligned_cols=46 Identities=17% Similarity=0.351 Sum_probs=34.8
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCccc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDI 1029 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~~ 1029 (1077)
|-.|.+.+.+..|..++|++|++++|++.. ..++ +.. ++.|+|+..
T Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~---~q~L--~~~--g~~L~d~~t 55 (76)
T 1ndd_A 10 GKEIEIDIEPTDKVERIKERVEEKEGIPPQ---QQRL--IYS--GKQMNDEKT 55 (76)
T ss_dssp SCEEEEECCTTCBHHHHHHHHHHHHCCCGG---GEEE--EET--TEECCTTSB
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCcChH---HEEE--EEC--CEECCCCCc
Confidence 778899999999999999999999999853 3443 333 344666543
No 110
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=55.36 E-value=24 Score=31.78 Aligned_cols=30 Identities=7% Similarity=-0.017 Sum_probs=27.0
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDE 1006 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~ 1006 (1077)
+..+-+.|.+..|..++|++|+.+.|+|..
T Consensus 26 ~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~ 55 (97)
T 2kj6_A 26 SFSADARFSPQMSVEAVKEKLWKKCGTSVN 55 (97)
T ss_dssp CCCEEEEECTTCCHHHHHHHHHHHHCCCTT
T ss_pred ceEEEEEeCCCChHHHHHHHHHHHHCcCHH
Confidence 456789999999999999999999999974
No 111
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=55.03 E-value=14 Score=32.93 Aligned_cols=71 Identities=14% Similarity=0.264 Sum_probs=51.9
Q ss_pred EEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCCCEE
Q 037461 653 LFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDII 732 (1077)
Q Consensus 653 ~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~GdIi 732 (1077)
||+|..+-. ++ .+-|+.+.+|.+|...|.+..|+|++..-.+|. + ..++...++....+.+|+.|
T Consensus 3 I~Vk~~~g~--~~----~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~------G---k~L~D~~tL~~~gi~~g~~i 67 (98)
T 1yx5_B 3 IFVKTLTGK--TI----TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNIQKESTL 67 (98)
T ss_dssp EEEEETTSC--EE----EEECCTTCBHHHHHHHHHHHTCCCGGGEEEEET------T---EECCTTSBTGGGTCCTTCEE
T ss_pred EEEEeCCCC--EE----EEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC------C---EECCCCCCHHHcCCCCCCEE
Confidence 566654432 22 345788999999999999999999887766663 2 12455678998999999998
Q ss_pred EEEecC
Q 037461 733 CFQKST 738 (1077)
Q Consensus 733 ~fQ~~~ 738 (1077)
..-...
T Consensus 68 ~l~~~~ 73 (98)
T 1yx5_B 68 HLVLRL 73 (98)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 766543
No 112
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=54.66 E-value=28 Score=31.38 Aligned_cols=31 Identities=26% Similarity=0.307 Sum_probs=27.9
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCccc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEE 1007 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~ 1007 (1077)
|-.|.+.|.+..|..++|++|++++|++-..
T Consensus 21 ~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~ 51 (102)
T 1v5o_A 21 EVTFSLQVNPDFELSNFRVLCELESGVPAEE 51 (102)
T ss_dssp CCEEEEEECTTCBHHHHHHHHHHHTCCCGGG
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHCcChHH
Confidence 5788899999999999999999999998543
No 113
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=53.71 E-value=41 Score=31.44 Aligned_cols=80 Identities=10% Similarity=-0.064 Sum_probs=57.5
Q ss_pred cEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccc-cccccccccccCCC
Q 037461 650 DILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEP-IEKRCTFRASQLED 728 (1077)
Q Consensus 650 ~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~-i~~~~tf~~~el~~ 728 (1077)
.+-|+++.= ... ....+-++++.+|++|...|.+..|+|++..-..|..-. .. .+.. .+...++...-|++
T Consensus 6 ~v~l~V~~~---~~~--~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~--~~-~~~~l~~D~~tL~~y~i~~ 77 (122)
T 1t0y_A 6 VYDLEITTN---ATD--FPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGD--DQ-LKGELTDGAKSLKDLGVRD 77 (122)
T ss_dssp EEEEEEEES---SCC--SCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSS--SS-EEEECCCCSSBTTTTTCCS
T ss_pred EEEEEEEEC---CCC--ccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCC--Cc-cccccCCCcCCHHHCCCCC
Confidence 467777762 111 234567889999999999999999999999877776421 11 2223 35667898888999
Q ss_pred CCEEEEEec
Q 037461 729 GDIICFQKS 737 (1077)
Q Consensus 729 GdIi~fQ~~ 737 (1077)
|+.|..-..
T Consensus 78 g~~ihvvd~ 86 (122)
T 1t0y_A 78 GYRIHAVDV 86 (122)
T ss_dssp SEEEEEEEC
T ss_pred CCEEEEEeC
Confidence 999988754
No 114
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.67 E-value=12 Score=31.83 Aligned_cols=46 Identities=26% Similarity=0.314 Sum_probs=34.6
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCccc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDI 1029 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~~ 1029 (1077)
|-+|.+.+.+..|..++|++|++++|++.. +.|+ +.. ++-|+|+..
T Consensus 17 g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~---~qrL--~~~--gk~L~d~~t 62 (81)
T 2dzi_A 17 GRECSLQVPEDELVSTLKQLVSEKLNVPVR---QQRL--LFK--GKALADGKR 62 (81)
T ss_dssp SCEEEEEECSSCBHHHHHHHHHHHTCCCTT---TCEE--EET--TEECCTTSB
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCcCHH---HEEE--EEC--CeECCCCCc
Confidence 778899999999999999999999999853 4444 223 344666543
No 115
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=53.49 E-value=15 Score=32.47 Aligned_cols=71 Identities=14% Similarity=0.263 Sum_probs=53.4
Q ss_pred EEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCCCE
Q 037461 652 LLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDI 731 (1077)
Q Consensus 652 ~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~GdI 731 (1077)
-||+|..+-. ++ .+-|..+.+|.+|...|.+..|+|++..-.+|. + ..++...++....|.+|+.
T Consensus 3 ~i~vk~~~g~--~~----~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~------G---~~L~d~~tL~~~~i~~~~~ 67 (96)
T 3k9o_B 3 QIFVKTLTGK--TI----TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNIQKEST 67 (96)
T ss_dssp EEEEEETTCC--EE----EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET------T---EECCTTSBTGGGTCCTTCE
T ss_pred EEEEEeCCCC--EE----EEEECCCCCHHHHHHHHHhhhCCChhHEEEEEC------C---EECCCCCcHHHcCCCCCCE
Confidence 5778776533 22 245788999999999999999999887766663 2 2345667999999999998
Q ss_pred EEEEec
Q 037461 732 ICFQKS 737 (1077)
Q Consensus 732 i~fQ~~ 737 (1077)
|..-..
T Consensus 68 i~l~~r 73 (96)
T 3k9o_B 68 LHLVLR 73 (96)
T ss_dssp EEEEEC
T ss_pred EEEEEE
Confidence 877654
No 116
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=53.19 E-value=12 Score=32.74 Aligned_cols=46 Identities=17% Similarity=0.354 Sum_probs=35.1
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCccc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDI 1029 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~~ 1029 (1077)
|-.|.+.+.+.+|..++|++|++++|++.... |+ +.. ++-|+|+..
T Consensus 10 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~q---rL--i~~--Gk~L~D~~t 55 (88)
T 4fbj_B 10 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQ---RL--IYS--GKQMNDEKT 55 (88)
T ss_dssp CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGC---EE--EET--TEECCTTSB
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCcChhHE---EE--EEC--CeECCCCCc
Confidence 77899999999999999999999999987543 43 333 344666543
No 117
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=51.51 E-value=14 Score=31.03 Aligned_cols=45 Identities=16% Similarity=0.285 Sum_probs=34.1
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCcc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTD 1028 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~ 1028 (1077)
|-.|.+.+.+..|..++|++|++++|++.. ..|+ +..+ +-|+|+.
T Consensus 13 g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~---~qrL--~~~g--k~L~d~~ 57 (77)
T 2bwf_A 13 QDKWEVNVAPESTVLQFKEAINKANGIPVA---NQRL--IYSG--KILKDDQ 57 (77)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHHHHCCCGG---GEEE--EETT--EECCTTS
T ss_pred CEEEEEEECCCCcHHHHHHHHHHHhCCCHH---HEEE--EECC--eEcCCCC
Confidence 667889999999999999999999999853 3443 3333 3466654
No 118
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=51.35 E-value=16 Score=31.91 Aligned_cols=47 Identities=17% Similarity=0.305 Sum_probs=35.8
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCcccc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDIV 1030 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~~~ 1030 (1077)
|--|.+.|.+..|..++|++|++++|++-.. .|+ +.. ++-|+|+..+
T Consensus 15 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~---qrL--i~~--Gk~L~d~~tL 61 (90)
T 4dwf_A 15 SQTRTFIVGAQMNVKEFKEHIAASVSIPSEK---QRL--IYQ--GRVLQDDKKL 61 (90)
T ss_dssp CCEEEEEEETTCBHHHHHHHHHHHHTCCGGG---EEE--EET--TEECCTTSBG
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCHHH---EEE--EEC--CeECCCCCCH
Confidence 7788999999999999999999999998754 343 333 3457665443
No 119
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=51.27 E-value=55 Score=29.25 Aligned_cols=66 Identities=12% Similarity=0.099 Sum_probs=44.5
Q ss_pred eEEEEEEcCCCCeEEEEEEEcCCCCCHHHHHHHHhhccccCCCCccEEEEEEeccEEEEe-cCCcccccc
Q 037461 862 TLKVAFHHATKDEVSVHTIRLPKQSTVGDVINDLKTKVELSQPDAELRLLEVFYHKIYKI-FPLNEKIEN 930 (1077)
Q Consensus 862 ~~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~~~~~~~~lRl~ev~~~ki~~~-~~~~~~i~~ 930 (1077)
.|+|....+...- ..+++.++.+.||.+|.++++.+.+++++. .||+-...+|..+. ..++.++.+
T Consensus 15 ~v~l~It~s~~~~-~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~--QrL~~~~~g~~~~~L~~D~~tL~~ 81 (95)
T 2kjr_A 15 FIKVNVSNSHNDA-VAFEVKLAKDLTVAQLKTKLEILTGGCAGT--MKVQVFKGDTCVSTMDNNDAQLGY 81 (95)
T ss_dssp EEEEEEEESSCSC-EEEEEEEETTCBHHHHHHHHHHHHCSCTTT--EEEEEEETTEEEEECCCTTSBHHH
T ss_pred eEEEEEEECCCCc-eEEEEEeCccCHHHHHHHHHHHHHCcCHHH--eEEEEecCCcccceeCCCCCCHhH
Confidence 3455444444432 356889999999999999999999998776 45543335665544 466666654
No 120
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=51.07 E-value=10 Score=33.40 Aligned_cols=56 Identities=16% Similarity=0.248 Sum_probs=40.4
Q ss_pred CeEEEecccCCHHHHHHHHHHHcCCCCCCcEEEeeccccCCCCCCCcccccCccchHHhhhc
Q 037461 776 DFCLEMSKLYTYDDVVERVAQQLGLDDPSKIRLTSHNCYSQQPKPQPIKYRGVDHLSDMLIH 837 (1077)
Q Consensus 776 ~f~~~ls~~~~Y~~~~~~v~~~l~~~~p~~lr~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 837 (1077)
.+.+.++...+|.+|.++|+++|++. +++++|. |...+...-+ ..+...|.+.|..
T Consensus 15 tvairvp~~~~y~~L~~~l~~kL~l~-~~~~~Ls----Yk~~~s~~~v-i~~d~dl~~aw~~ 70 (83)
T 1oey_A 15 TVVMKTQPGLPYSQVRDMVSKKLELR-LEHTKLS----YRPRDSNELV-PLSEDSMKDAWGQ 70 (83)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCC-GGGCCEE----ECCTTCSSCE-ECCTTTHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC-cceeEEE----eeCCCCCCee-ccChHHHHHHHHh
Confidence 58999999999999999999999984 7787774 3332222222 3334788888864
No 121
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=50.92 E-value=13 Score=32.55 Aligned_cols=46 Identities=17% Similarity=0.150 Sum_probs=34.8
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCccc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDI 1029 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~~ 1029 (1077)
|-.|.+.|.+..|..++|++|+++.|++... .++ +..+ +-|+|+..
T Consensus 14 g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~---qrL--~~~G--k~L~D~~t 59 (88)
T 2hj8_A 14 GRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL---FWL--TFEG--KPLEDQLP 59 (88)
T ss_dssp SCEEEEEEESSSBHHHHHHHHHHHTCSCTTT---EEE--ESSS--SCCCTTSB
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHhCCChhH---EEE--EECC--EECCCCCc
Confidence 7788999999999999999999999998643 343 3333 34666543
No 122
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=50.79 E-value=15 Score=32.05 Aligned_cols=46 Identities=17% Similarity=0.299 Sum_probs=35.1
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCccc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDI 1029 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~~ 1029 (1077)
|-.|.+.+.+..|..++|++|+++.|++... .|+ +.. ++-|+|+..
T Consensus 27 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~---qrL--i~~--Gk~L~D~~t 72 (88)
T 4eew_A 27 SQTRTFIVGAQMNVKEFKEHIAASVSIPSEK---QRL--IYQ--GRVLQDDKK 72 (88)
T ss_dssp SCEEEEEEETTCBHHHHHHHHHHHHTCCGGG---EEE--EET--TEECCTTSB
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCHHH---EEE--EEC--CEECCCCCc
Confidence 7778899999999999999999999998754 343 333 345666543
No 123
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=50.64 E-value=16 Score=32.01 Aligned_cols=30 Identities=27% Similarity=0.593 Sum_probs=27.9
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDE 1006 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~ 1006 (1077)
|-.|.+.+.+..|..++|++|++++|++..
T Consensus 19 G~~~~l~v~~~~TV~~LK~~I~~~~gip~~ 48 (88)
T 1sif_A 19 GKTFTVEMEPSDTIENLKAKIQDKEGIPPD 48 (88)
T ss_dssp SCEEEEECCTTSBHHHHHHHHHHHHCCCGG
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCcChh
Confidence 788999999999999999999999999864
No 124
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=49.96 E-value=17 Score=31.62 Aligned_cols=57 Identities=12% Similarity=0.231 Sum_probs=45.2
Q ss_pred EEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCCCEEEEEe
Q 037461 671 LFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICFQK 736 (1077)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~GdIi~fQ~ 736 (1077)
+-|+.+.+|.+|...|.+..|+|++..-.+|. + ..++...++....+.+|+.|.+-.
T Consensus 26 l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~------G---k~L~D~~tL~~~gi~~g~~l~l~~ 82 (85)
T 2kd0_A 26 LSVSPDCTVKDLKSQLQPITNVLPRGQKLIFK------G---KVLVETSTLKQSDVGSGAKLMLMA 82 (85)
T ss_dssp EEECTTSBHHHHHHHHHHHHCCCTTTCEEEET------T---EECCTTCBTTTTTCCTTEEEEEEC
T ss_pred EEECCCCcHHHHHHHHHHHHCcChHHEEEEEC------C---eECCCcCCHHHCCCCCCCEEEEEE
Confidence 45788999999999999999999887766653 2 234556789888999999887643
No 125
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=49.20 E-value=33 Score=32.67 Aligned_cols=32 Identities=16% Similarity=0.256 Sum_probs=26.9
Q ss_pred eEEEEecCCCchhhHHHHHHhcCCCCCCcEEE
Q 037461 669 GRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDL 700 (1077)
Q Consensus 669 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 700 (1077)
-.+.|+.+.+|.+++..||+.+|++..++..|
T Consensus 24 ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L 55 (128)
T 2kc2_A 24 KTIMVDDSKTVTDMLMTICARIGITNHDEYSL 55 (128)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHTCCCCSSEEE
T ss_pred EEEEeCCCcCHHHHHHHHHHHhCCCCcccccc
Confidence 45678999999999999999999997766444
No 126
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=49.13 E-value=15 Score=32.86 Aligned_cols=46 Identities=24% Similarity=0.481 Sum_probs=35.2
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCccc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDI 1029 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~~ 1029 (1077)
|-.|.+.|.+..|..++|++|++++|++.... |+ +..+ +-|+|+..
T Consensus 32 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~q---rL--i~~G--k~L~D~~t 77 (98)
T 4hcn_B 32 GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQ---RL--IFAG--KQLEDGRT 77 (98)
T ss_dssp CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGC---EE--EETT--EECCTTCB
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHhCCChhHE---EE--EECC--EECCCCCc
Confidence 77889999999999999999999999987553 33 3333 44666543
No 127
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=49.06 E-value=18 Score=32.44 Aligned_cols=45 Identities=18% Similarity=0.309 Sum_probs=34.8
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCcc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTD 1028 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~ 1028 (1077)
|-.|.|.|.+..|+.++|++|+++.|++.. +.+| +..++ -|+|+.
T Consensus 31 g~~~~l~v~~~~tv~~lK~~i~~~~gip~~---~qrL--if~Gk--~L~d~~ 75 (97)
T 1wyw_B 31 SSEIHFKVKMTTHLKKLKESYCQRQGVPMN---SLRF--LFEGQ--RIADNH 75 (97)
T ss_dssp CCEEEEEEETTSCTHHHHHHHHHHHTCCGG---GEEE--EETTE--ECCTTC
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCCChh---hEEE--EECCe--EcCCCC
Confidence 788999999999999999999999999864 3443 43443 355554
No 128
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=48.51 E-value=18 Score=33.53 Aligned_cols=73 Identities=15% Similarity=0.215 Sum_probs=52.9
Q ss_pred EEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCCC
Q 037461 651 ILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGD 730 (1077)
Q Consensus 651 ~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~Gd 730 (1077)
.-||+|..+-.+- .+-|..+.+|.+|...|.+..|+|++..-.+|. + ..++...++....+.+|+
T Consensus 10 ~~i~vk~l~G~~~------~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~------G---k~L~D~~tL~~ygI~~gs 74 (114)
T 2kdi_A 10 FQIFAKTLTGKTI------TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWA------G---KQLEDGRTLSDYNIQRES 74 (114)
T ss_dssp CEEEEEETTCCEE------EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET------T---EECCTTCBTTTTTCCSSC
T ss_pred EEEEEEeCCCcEE------EEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC------C---EECCCCCcHHHCCCCCCC
Confidence 3456665554322 234678899999999999999999888766664 2 124556789989999999
Q ss_pred EEEEEecC
Q 037461 731 IICFQKST 738 (1077)
Q Consensus 731 Ii~fQ~~~ 738 (1077)
.|..-...
T Consensus 75 tI~l~~~~ 82 (114)
T 2kdi_A 75 TLHLVLRL 82 (114)
T ss_dssp EEEEEECC
T ss_pred EEEEEEEc
Confidence 98776554
No 129
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=48.24 E-value=15 Score=31.81 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=34.5
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCccc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDI 1029 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~~ 1029 (1077)
|-.|.+.+.+..|..++|++|++++|++.. ..++ +..+ +-|+|+..
T Consensus 17 g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~---~qrL--~~~G--k~L~d~~t 62 (87)
T 1wh3_A 17 GGSYAYAINPNSFILGLKQQIEDQQGLPKK---QQQL--EFQG--QVLQDWLG 62 (87)
T ss_dssp TEEEEEEECSSSBHHHHHHHHHHHTCCCTT---TEEE--EETT--EECCSSSB
T ss_pred CCEEEEEeCCCChHHHHHHHHHHHhCCChH---HEEE--EECC--EEccCCCC
Confidence 778899999999999999999999999853 3443 3333 34666543
No 130
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=47.92 E-value=9 Score=33.33 Aligned_cols=63 Identities=14% Similarity=0.269 Sum_probs=41.8
Q ss_pred eeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCccccccc--ccccccccccCCCCCEEEEE
Q 037461 667 YVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPI--EKRCTFRASQLEDGDIICFQ 735 (1077)
Q Consensus 667 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i--~~~~tf~~~el~~GdIi~fQ 735 (1077)
|.-.+-++.+.++.+|...|.+.++.|.+.. .+|=.- .|. .++ ....++...-|.+||.|+..
T Consensus 14 G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~-~l~~~~--~p~---~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 14 GVKRITATKRETAATFLKKVAKEFGFQNNGF-SVYINR--NKT---GEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp EEEECCCCSSCCHHHHHHHHHHHTCCCTTTC-CCCCSC--CGG---GGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred CCEEEEcCCcChHHHHHHHHHHHcCCCCCcc-eEEecC--CCC---CcccCCCCCCHHHcCCCCCCEEEEe
Confidence 3344456788999999999999999886543 222222 242 122 25567888889999999864
No 131
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=47.38 E-value=17 Score=32.15 Aligned_cols=46 Identities=24% Similarity=0.489 Sum_probs=35.2
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCccc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDI 1029 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~~ 1029 (1077)
|-.|.+.|.+..|..++|++|++++|++-.. .|+ +..+ +-|+|+..
T Consensus 11 g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~---qrL--~~~G--~~L~d~~t 56 (96)
T 3k9o_B 11 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQ---QRL--IFAG--KQLEDGRT 56 (96)
T ss_dssp CCEEEEECCTTCBHHHHHHHHHHHHCCCGGG---EEE--EETT--EECCTTSB
T ss_pred CCEEEEEECCCCCHHHHHHHHHhhhCCChhH---EEE--EECC--EECCCCCc
Confidence 7889999999999999999999999998654 343 3333 34666543
No 132
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=46.68 E-value=17 Score=31.71 Aligned_cols=62 Identities=16% Similarity=0.319 Sum_probs=45.6
Q ss_pred EecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCCCEEEEEecC
Q 037461 673 VKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICFQKST 738 (1077)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~GdIi~fQ~~~ 738 (1077)
++.+.+|.+|...|.+..|+|++..-.+|- | |....+.-+...++...-|.+|+.|.+....
T Consensus 17 l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~---~-p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~~ 78 (86)
T 2kzr_A 17 LSSRTRLRELQGQIAAITGIAPGSQRILVG---Y-PPECLDLSDRDITLGDLPIQSGDMLIVEEDQ 78 (86)
T ss_dssp CCTTCBHHHHHHHHHHHTCCCTTTCCCEES---S-CCCCCCCCCSSCBTTTSSCCTTCEEECCCCS
T ss_pred cCCCCCHHHHHHHHHHHhCCCccceEEEeC---C-CCcccccCCCCCCHHHcCCCCCCEEEEEeCC
Confidence 567899999999999999999876655552 2 3322121125678988899999999998654
No 133
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=46.67 E-value=34 Score=31.56 Aligned_cols=78 Identities=21% Similarity=0.256 Sum_probs=49.1
Q ss_pred ecchhhh-cCCCCCeEEEEEEeeccCccccccccccCcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCC
Q 037461 942 EIPEEEK-NLGPHDRLIHVYHFTKETAQNQMQIQNFGEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGR 1020 (1077)
Q Consensus 942 ~iP~~e~-~~~~~~~~i~v~hf~k~~~~~h~~~~~fGiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~ 1020 (1077)
.+|+++- ...++..-|.|-+-..+.... ...-|-.|.+.|.+..|..++|++|+++.|++. ++.|+- ..+
T Consensus 12 l~~e~~~l~~~~~~i~l~V~~p~~~~~~~---~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~---~~QrL~--~~G- 82 (115)
T 1we7_A 12 LMPEEEFLRRNKGPVSIKVQVPNMQDKTE---WKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPA---GKQKLQ--YEG- 82 (115)
T ss_dssp CCCHHHHHHHCCSCEEEEEEECCCSSSCS---SCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCT---TTEEEE--ETT-
T ss_pred cCCHHHHHHhCCCCEEEEEEcCCCccccc---cccCCeEEEEEECCCCCHHHHHHHHHHHHCCCh---HHEEEE--ECC-
Confidence 4676652 233566667776543221000 123388899999999999999999999999984 344442 233
Q ss_pred CcccCCccc
Q 037461 1021 PEYLQDTDI 1029 (1077)
Q Consensus 1021 ~~~~~~~~~ 1029 (1077)
.-|+|+..
T Consensus 83 -k~L~D~~t 90 (115)
T 1we7_A 83 -IFIKDSNS 90 (115)
T ss_dssp -EEECTTSB
T ss_pred -EECCCCCC
Confidence 34666543
No 134
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=46.49 E-value=17 Score=31.77 Aligned_cols=46 Identities=20% Similarity=0.219 Sum_probs=34.4
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCccc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDI 1029 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~~ 1029 (1077)
|-.|.+.+.+..|..++|++|++++|++. ++.|+ +.. ++-|+|+..
T Consensus 21 g~~~~l~v~~~~TV~~LK~~I~~~~gip~---~~qrL--~~~--Gk~L~D~~t 66 (85)
T 2kd0_A 21 GKSIPLSVSPDCTVKDLKSQLQPITNVLP---RGQKL--IFK--GKVLVETST 66 (85)
T ss_dssp TEEEEEEECTTSBHHHHHHHHHHHHCCCT---TTCEE--EET--TEECCTTCB
T ss_pred CEEEEEEECCCCcHHHHHHHHHHHHCcCh---HHEEE--EEC--CeECCCcCC
Confidence 77888999999999999999999999985 33443 223 344666543
No 135
>1wxa_A Afadin, AF-6 protein; RAS-binding domain, ubiquitin-like fold, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.15.1.5
Probab=46.14 E-value=35 Score=31.88 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=32.4
Q ss_pred EEEcCCCCCHHHHHHHHhhccccCCC-CccEEEEEEe
Q 037461 879 TIRLPKQSTVGDVINDLKTKVELSQP-DAELRLLEVF 914 (1077)
Q Consensus 879 ~~~v~k~~tv~dll~~l~~~~~~~~~-~~~lRl~ev~ 914 (1077)
+|++.++.|..+|+.++..+++++.+ .....|.+|.
T Consensus 27 svlvt~~tta~~vV~eaLekygL~~~~~~~Y~LveV~ 63 (116)
T 1wxa_A 27 TILLSTTDTADFAVAESLEKYGLEKENPKDYCIARVM 63 (116)
T ss_dssp EEECCSSCCHHHHHHHHHHHHTCSSSCTTTEEEEEEE
T ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCchheEEEEEE
Confidence 79999999999999999999999874 4679999985
No 136
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=46.11 E-value=47 Score=30.30 Aligned_cols=76 Identities=7% Similarity=0.044 Sum_probs=55.3
Q ss_pred CcEEEEEeeeCC-CCceEEeeeEEEEec-CCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccC
Q 037461 649 EDILLFFKLYDP-EKEELRYVGRLFVKS-TGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQL 726 (1077)
Q Consensus 649 ~~~~~f~k~~d~-~~~~l~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el 726 (1077)
..+-||+|.-.. ..+.+ .+-|.. +.+|.+|...|.+..|+|++..-.+|. + ..++...++....|
T Consensus 26 ~~i~i~Vk~~~~~~g~~~----~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~------G---k~L~D~~tL~~y~I 92 (111)
T 1we6_A 26 GPATIRVSKPNENDGQFM----EITVQSLSENVGSLKEKIAGEIQIPANKQKLSGK------A---GFLKDNMSLAHYNV 92 (111)
T ss_dssp SCEEEEECCTTCSSSCCE----EEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECS------S---SBCCTTSBTTTTTC
T ss_pred CcEEEEEEecccCCCcEE----EEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEEC------C---EECCCCCcHHHCCC
Confidence 347777776421 22232 256787 999999999999999999998877763 1 23455678988999
Q ss_pred CCCCEEEEEec
Q 037461 727 EDGDIICFQKS 737 (1077)
Q Consensus 727 ~~GdIi~fQ~~ 737 (1077)
.+|+.|..-..
T Consensus 93 ~~g~~l~l~~r 103 (111)
T 1we6_A 93 GAGEILTLSLR 103 (111)
T ss_dssp SSSCEEEEECS
T ss_pred CCCCEEEEEEE
Confidence 99999877644
No 137
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=46.10 E-value=22 Score=32.68 Aligned_cols=46 Identities=24% Similarity=0.489 Sum_probs=35.0
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCccc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDI 1029 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~~ 1029 (1077)
|-.|.|.|.+..|..++|++|+++.|++... .|+ +..+ +-|.|+..
T Consensus 45 G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~---QrL--i~~G--k~L~D~~t 90 (111)
T 3vdz_A 45 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQ---QRL--IFAG--KQLEDGRT 90 (111)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGG---EEE--EETT--EECCTTSB
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHhCCChHH---EEE--EECC--EECCCCCc
Confidence 7789999999999999999999999998643 343 3333 34666543
No 138
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=45.75 E-value=32 Score=32.43 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=26.5
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPD 1005 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~ 1005 (1077)
|-.|.+.|.+..|+.++|++|++++|++-
T Consensus 41 g~~~~l~v~~~~TV~~LK~~I~~~~gip~ 69 (125)
T 1j8c_A 41 KEKEEFAVPENSSVQQFKEAISKRFKSQT 69 (125)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCSCS
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCcCc
Confidence 55688999999999999999999999985
No 139
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=44.60 E-value=38 Score=34.92 Aligned_cols=72 Identities=24% Similarity=0.165 Sum_probs=54.8
Q ss_pred CCCcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccC
Q 037461 647 TKEDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQL 726 (1077)
Q Consensus 647 ~~~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el 726 (1077)
++++|.|.++ + ..+. -++-|.++.++.-|+...+++.|+|.++--.+|.= .+|....|-...++
T Consensus 18 ~~~~i~ikv~--~-~~~~----v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG---------~~i~~~~Tpk~L~~ 81 (209)
T 3uf8_A 18 PETHINLKVS--D-GSSE----IFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDG---------IRIQADQTPEDLDM 81 (209)
T ss_dssp CCSEEEEEEE--C-SSCE----EEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETT---------EECCTTCCTTTTTC
T ss_pred CCCcEEEEEE--c-CCCE----EEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECC---------EeccCCCChHHhhh
Confidence 4566777776 4 3333 34788999999999999999999998887666652 34666778888889
Q ss_pred CCCCEEEE
Q 037461 727 EDGDIICF 734 (1077)
Q Consensus 727 ~~GdIi~f 734 (1077)
.|||+|=.
T Consensus 82 ed~d~I~~ 89 (209)
T 3uf8_A 82 EDNDIIEA 89 (209)
T ss_dssp CTTEEEEE
T ss_pred cccccchh
Confidence 99999843
No 140
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=44.54 E-value=20 Score=31.77 Aligned_cols=30 Identities=13% Similarity=0.253 Sum_probs=27.1
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDE 1006 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~ 1006 (1077)
|-.|.+.|.+..|..++|++|++++|++..
T Consensus 26 g~~~~~~v~~~~TV~~LK~~I~~~~gip~~ 55 (96)
T 1wx8_A 26 QDCHEFFLAENSNVRRFKKQISKYLHCNAD 55 (96)
T ss_dssp SSEEEEEEETTCCHHHHHHHHHHHTCSCTT
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHhCCCHH
Confidence 567788999999999999999999999864
No 141
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=44.43 E-value=78 Score=28.11 Aligned_cols=74 Identities=14% Similarity=0.258 Sum_probs=54.2
Q ss_pred CcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCC
Q 037461 649 EDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLED 728 (1077)
Q Consensus 649 ~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~ 728 (1077)
..+-|++|+ . .+++ ..+-|..+.+|.+|...|.+..|+|++..-.+|. +. .++.. ++....|.+
T Consensus 6 ~~m~i~Vk~-~--g~~~---~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~------Gk---~L~D~-tL~~~~I~~ 69 (96)
T 1wgg_A 6 SGYSVTVKW-G--KEKF---EGVELNTDEPPMVFKAQLFALTGVQPARQKVMVK------GG---TLKDD-DWGNIKMKN 69 (96)
T ss_dssp CEEEEEEEE-T--TEEE---EEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEET------TE---ECCSS-CCCSCCCCS
T ss_pred cEEEEEEEE-C--CEEE---EEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC------Cc---CCCCC-CHHHCCCCC
Confidence 457899994 2 2333 1246889999999999999999999988766652 21 24445 888888999
Q ss_pred CCEEEEEecC
Q 037461 729 GDIICFQKST 738 (1077)
Q Consensus 729 GdIi~fQ~~~ 738 (1077)
|+.|..-...
T Consensus 70 g~~i~l~~~~ 79 (96)
T 1wgg_A 70 GMTVLMMGSA 79 (96)
T ss_dssp SCEEECCCCC
T ss_pred CCEEEEEecc
Confidence 9998876543
No 142
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=44.30 E-value=36 Score=30.24 Aligned_cols=73 Identities=10% Similarity=-0.002 Sum_probs=54.5
Q ss_pred CcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccc-cccccccCC
Q 037461 649 EDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKR-CTFRASQLE 727 (1077)
Q Consensus 649 ~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~-~tf~~~el~ 727 (1077)
..+-||+|.-. .+ -.+-|..+.+|.+|...|.+..|+|++..-.+|. + ..++.. .++....+.
T Consensus 14 ~~~~I~Vk~~~---~~----~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~------G---k~L~D~~~tL~~ygI~ 77 (94)
T 2kan_A 14 RKIHVTVKFPS---KQ----FTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYS------G---IELADDYRNLNEYGIT 77 (94)
T ss_dssp CCEEEEEECSS---CE----EEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEET------T---EEECCTTSBHHHHTCC
T ss_pred CCEEEEEEcCC---cE----EEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEEC------C---EECCCCcccHHHCCCC
Confidence 45788998632 22 2356889999999999999999999988866664 2 124445 788888999
Q ss_pred CCCEEEEEec
Q 037461 728 DGDIICFQKS 737 (1077)
Q Consensus 728 ~GdIi~fQ~~ 737 (1077)
+|+.|..-..
T Consensus 78 ~gstl~lv~r 87 (94)
T 2kan_A 78 EFSEIVVFLK 87 (94)
T ss_dssp TTEEEEEEEC
T ss_pred CCCEEEEEEe
Confidence 9998876544
No 143
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=44.28 E-value=20 Score=31.98 Aligned_cols=45 Identities=24% Similarity=0.503 Sum_probs=34.3
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCcc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTD 1028 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~ 1028 (1077)
|-.|.+.+.+..|..++|++|++++|++.. +.|+ +..+ +-|+|+.
T Consensus 10 g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~---~qrL--~~~G--k~L~D~~ 54 (98)
T 1yx5_B 10 GKTITLEVEPSDTIENVKAKIQDKEGIPPD---QQRL--IFAG--KQLEDGR 54 (98)
T ss_dssp SCEEEEECCTTCBHHHHHHHHHHHTCCCGG---GEEE--EETT--EECCTTS
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCcChh---hEEE--EECC--EECCCCC
Confidence 778899999999999999999999999863 4444 3333 3466543
No 144
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=44.27 E-value=18 Score=32.29 Aligned_cols=30 Identities=17% Similarity=0.131 Sum_probs=26.7
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDE 1006 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~ 1006 (1077)
|-.|.+.|.+.+|+.++|++|++++||+-.
T Consensus 26 g~~~~i~v~~~~TV~~LK~~I~~~tgip~~ 55 (95)
T 1v86_A 26 KTKHDVKVPLDSTGSELKQKIHSITGLPPA 55 (95)
T ss_dssp TEEEEEEECTTSBHHHHHHHHHHHHCSCST
T ss_pred CEEEEEEECCCCcHHHHHHHHHHHHCcCHH
Confidence 556778999999999999999999999853
No 145
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=44.14 E-value=22 Score=32.04 Aligned_cols=46 Identities=20% Similarity=0.348 Sum_probs=34.2
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCccc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDI 1029 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~~ 1029 (1077)
|-.|.+.|.+..|..++|++|++++|++.. ..|+ +..+ +-|+|+..
T Consensus 34 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~---~qrL--i~~G--k~L~D~~t 79 (101)
T 2klc_A 34 KEKEEFAVPENSSVQQFKEEISKRFKSHTD---QLVL--IFAG--KILKDQDT 79 (101)
T ss_dssp SCEEEEEECSCCCHHHHHHHHHHHHTCCGG---GEEE--EETT--EEECTTCC
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHHCcChh---hEEE--EECC--EECCCcCc
Confidence 557889999999999999999999999853 4454 3333 34665543
No 146
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=43.74 E-value=1.3e+02 Score=26.67 Aligned_cols=76 Identities=11% Similarity=0.246 Sum_probs=52.5
Q ss_pred cceEEEEEec-CCCCCCCeEEEecccCCHHHHHHHHHHHcCCCCCC-cEEEeeccccCCCCCCCcccccCccchHHhhhc
Q 037461 760 NRQVVHFRSL-EKPKEDDFCLEMSKLYTYDDVVERVAQQLGLDDPS-KIRLTSHNCYSQQPKPQPIKYRGVDHLSDMLIH 837 (1077)
Q Consensus 760 nr~~v~f~~~-~~~~~~~f~~~ls~~~~Y~~~~~~v~~~l~~~~p~-~lr~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 837 (1077)
.+|.|.|++. +.|.-+.=..-++..+|..++...+-++|++. |+ -|=+|..|.. .|.+ ..++.++...
T Consensus 4 ~Kv~v~fk~~g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~-~~~alFlyVnn~~--~P~~-------d~~~~~Ly~~ 73 (91)
T 4gdk_A 4 KKIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLV-ASEQLFIYVNQSF--APSP-------DQEVGTLYEC 73 (91)
T ss_dssp CEEEEEEEECSSSCCCSCCEEEEETTCBHHHHHHHHHHHTTCC-SSSCCEEEETTTB--CCCT-------TCBHHHHHHH
T ss_pred ceEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHHhCCC-CCCeEEEEECCcc--CCCh-------hhHHHHHHHH
Confidence 3789999996 44555566788899999999999999999985 55 4666653222 2332 3678888765
Q ss_pred cCCCcceee
Q 037461 838 YNQTSDVLY 846 (1077)
Q Consensus 838 ~~~~~~~l~ 846 (1077)
+. .-..||
T Consensus 74 ~k-~DGfLy 81 (91)
T 4gdk_A 74 FG-SDGKLV 81 (91)
T ss_dssp HC-BTTEEE
T ss_pred hC-CCCEEE
Confidence 55 334444
No 147
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=43.41 E-value=16 Score=33.54 Aligned_cols=79 Identities=11% Similarity=0.123 Sum_probs=52.3
Q ss_pred EEEEEeeeCCCCceEEeeeEEEEe-cCCCchhhHHHHHHhcCCCCCCcEEEEEEe----ecCCc---ccccccccccccc
Q 037461 651 ILLFFKLYDPEKEELRYVGRLFVK-STGKPMEYLPKLNEMAGYAPDEEIDLYEEI----KFEPS---VMCEPIEKRCTFR 722 (1077)
Q Consensus 651 ~~~f~k~~d~~~~~l~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~lyEEi----k~~p~---~~ie~i~~~~tf~ 722 (1077)
++|++|-=+ - .-.+-|. .+.+|.+|...|.+..|+|++..-..|.-- | .|. .+...++...++.
T Consensus 8 M~irvrs~~--G-----~~~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k-~~~~~~~l~~~l~d~~tL~ 79 (107)
T 1wf9_A 8 TMLRVRSRD--G-----LERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAK-SPSDFLAFTDMADPNLRIS 79 (107)
T ss_dssp EEEEEECSS--C-----EEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCC-SHHHHTTCCSSCCTTCBGG
T ss_pred EEEEEECCC--C-----CEEEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCcccccc-CccccccccccCCCCCCHH
Confidence 678887322 1 1234577 889999999999999999988764323211 0 011 0111146678899
Q ss_pred cccCCCCCEEEEEec
Q 037461 723 ASQLEDGDIICFQKS 737 (1077)
Q Consensus 723 ~~el~~GdIi~fQ~~ 737 (1077)
..-|++||.|.+-..
T Consensus 80 ~~gi~~G~~L~l~~~ 94 (107)
T 1wf9_A 80 SLNLAHGSMVYLAYE 94 (107)
T ss_dssp GTCCCTTCEEECCCS
T ss_pred HCCCCCCCEEEEEeC
Confidence 889999999987654
No 148
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=43.17 E-value=25 Score=29.67 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=26.5
Q ss_pred Ccce-EEE-eccCCcHHHHHHHHHHHhCCCcc
Q 037461 977 GEPF-FLV-IHEGETLQEIKVRIQRKLQVPDE 1006 (1077)
Q Consensus 977 GiPF-~~~-i~~~E~~~~~k~ri~~~~~~~~~ 1006 (1077)
|-.+ .+. +.+..|..++|++|+++.|++..
T Consensus 12 g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~ 43 (78)
T 2faz_A 12 GRQTHTVDSLSRLTKVEELRRKIQELFHVEPG 43 (78)
T ss_dssp SSCEEEEEEECTTCBHHHHHHHHHHHHCCCGG
T ss_pred CCEEEEEeccCCCCCHHHHHHHHHHHHCcChh
Confidence 6664 788 99999999999999999999854
No 149
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=43.00 E-value=86 Score=27.27 Aligned_cols=74 Identities=12% Similarity=0.174 Sum_probs=54.0
Q ss_pred CcEEEEEeeeCCCCceEEeeeEEEEecC-----CCchhhHHHHHHhcCCCCCCcEEEEEEeecCCccccccccc-ccccc
Q 037461 649 EDILLFFKLYDPEKEELRYVGRLFVKST-----GKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEK-RCTFR 722 (1077)
Q Consensus 649 ~~~~~f~k~~d~~~~~l~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~-~~tf~ 722 (1077)
..+-|++|. . .++. .+-+..+ .+|.+|...|.+..|+|++..-.+|.- . .++. ..++.
T Consensus 6 ~~~~v~Vk~-~--~~~~----~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~G-----k----~L~D~~~~L~ 69 (92)
T 1wxv_A 6 SGLTVTVTH-S--NEKH----DLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKG-----K----SLKEMETPLS 69 (92)
T ss_dssp SSEEEEEEC-S--SSEE----EEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETT-----E----EECCSSSBHH
T ss_pred CeEEEEEEE-C--CEEE----EEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECC-----e----ecCCCcccHH
Confidence 357888887 2 3333 3457774 999999999999999999888766641 1 2333 45788
Q ss_pred cccCCCCCEEEEEecC
Q 037461 723 ASQLEDGDIICFQKST 738 (1077)
Q Consensus 723 ~~el~~GdIi~fQ~~~ 738 (1077)
...|.+|+.|..-...
T Consensus 70 ~~~i~~g~~i~l~~~~ 85 (92)
T 1wxv_A 70 ALGIQDGCRVMLIGKK 85 (92)
T ss_dssp HHTCCSSEEEEEESCC
T ss_pred HCCCCCCCEEEEEecC
Confidence 8889999998886554
No 150
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=42.69 E-value=63 Score=28.51 Aligned_cols=58 Identities=3% Similarity=0.170 Sum_probs=45.5
Q ss_pred EEEecCCCchhhHHHHHHh---cCCCCCCcEEEEEEeecCCcccccccccccccccccCCCCCEEEEEec
Q 037461 671 LFVKSTGKPMEYLPKLNEM---AGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICFQKS 737 (1077)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~GdIi~fQ~~ 737 (1077)
+-|..+.+|.+|...|.+. .|+|++..-.+|. + ..++...++....+.+|+.|..-..
T Consensus 15 ~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~------G---k~L~D~~tL~~ygI~~g~~i~l~~~ 75 (95)
T 1uel_A 15 IDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYA------G---KILNDDTALKEYKIDEKNFVVVMVT 75 (95)
T ss_dssp EECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEET------T---EECCTTSBGGGGTCCSSSEEEEEES
T ss_pred EEECCCCHHHHHHHHHHhhcccCCCChhhEEEEEC------C---EECCCcCcHHHCCCCCCCEEEEEEe
Confidence 4578889999999999998 6899888766663 2 1245567899999999999876654
No 151
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=42.64 E-value=52 Score=29.22 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=32.6
Q ss_pred EEEEEEcCCCCeEEEEEEEcCCCCCHHHHHHHHhhccccCCCCccE
Q 037461 863 LKVAFHHATKDEVSVHTIRLPKQSTVGDVINDLKTKVELSQPDAEL 908 (1077)
Q Consensus 863 ~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~~~~~~~~l 908 (1077)
++|....+....-+.++..+|++.||++|...+.+.++++.+..+|
T Consensus 10 v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L 55 (97)
T 1wjn_A 10 LTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLL 55 (97)
T ss_dssp EEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEE
T ss_pred EEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEE
Confidence 4554443322222456789999999999999999999998766443
No 152
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=41.64 E-value=26 Score=31.17 Aligned_cols=42 Identities=21% Similarity=0.277 Sum_probs=32.2
Q ss_pred ceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCc
Q 037461 979 PFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDT 1027 (1077)
Q Consensus 979 PF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~ 1027 (1077)
.|.+.|.+..|..++|++|+++.|++. ++.|+ +..+ +-|+|+
T Consensus 26 ~~~l~v~~~~TV~~LK~~I~~~~gip~---~~QrL--i~~G--k~L~D~ 67 (94)
T 2kan_A 26 QFTVEVDRTETVSSLKDKIHIVENTPI---KRMQL--YYSG--IELADD 67 (94)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHSSSCT---TTEEE--EETT--EEECCT
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCH---HHEEE--EECC--EECCCC
Confidence 788999999999999999999999985 34444 3333 346665
No 153
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.60 E-value=21 Score=32.37 Aligned_cols=30 Identities=27% Similarity=0.369 Sum_probs=27.0
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDE 1006 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~ 1006 (1077)
|-.+-+.|.+..|..++|++|+.++||+..
T Consensus 18 Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~ 47 (100)
T 2dzm_A 18 DRNVDVVLEDTCTVGEIKQILENELQIPVS 47 (100)
T ss_dssp SCEEEEEEETTSBHHHHHHHHHHHHCCCTT
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCCChh
Confidence 556778999999999999999999999974
No 154
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=41.26 E-value=21 Score=31.98 Aligned_cols=44 Identities=20% Similarity=0.170 Sum_probs=33.3
Q ss_pred Ccce-EEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCc
Q 037461 977 GEPF-FLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDT 1027 (1077)
Q Consensus 977 GiPF-~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~ 1027 (1077)
|-+| -+.|.+.+|+.++|++|+++.||+- ++.|+- . +++-|.|+
T Consensus 16 g~~~~~l~v~~~~TV~~lK~~I~~~tgip~---~~QkLi--~--~Gk~L~D~ 60 (96)
T 1wgg_A 16 KEKFEGVELNTDEPPMVFKAQLFALTGVQP---ARQKVM--V--KGGTLKDD 60 (96)
T ss_dssp TEEEEEEEEESSSCHHHHHHHHHHHTCCCT---TTSCCE--E--TTEECCSS
T ss_pred CEEEEEEEECCCCcHHHHHHHHHHHHCcCH---HHeEEE--E--CCcCCCCC
Confidence 6788 4899999999999999999999985 344442 2 33446665
No 155
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=41.24 E-value=15 Score=33.21 Aligned_cols=70 Identities=11% Similarity=0.270 Sum_probs=51.4
Q ss_pred cEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCC
Q 037461 650 DILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDG 729 (1077)
Q Consensus 650 ~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~G 729 (1077)
.+.|++|. . .+++ .+-|..+.+|.+|...|.+..|+|++..-.+|. + ..++...++....|++|
T Consensus 28 ~i~I~Vk~-~--g~~~----~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~------G---k~L~D~~tL~~~gI~~g 91 (101)
T 3m63_B 28 SLNIHIKS-G--QDKW----EVNVAPESTVLQFKEAINKANGIPVANQRLIYS------G---KILKDDQTVESYHIQDG 91 (101)
T ss_dssp -CCEEEEC-S--SCCC----CBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEET------T---EECCTTSBTTTTTCCTT
T ss_pred EEEEEEEE-C--CEEE----EEEeCCCCCHHHHHHHHHHHHCcChHHEEEEEC------C---EECCCcCcHHHCCCCCC
Confidence 46677775 2 2222 235678899999999999999999988866663 2 23455788999999999
Q ss_pred CEEEEE
Q 037461 730 DIICFQ 735 (1077)
Q Consensus 730 dIi~fQ 735 (1077)
+.|..-
T Consensus 92 ~tI~lv 97 (101)
T 3m63_B 92 HSVHLV 97 (101)
T ss_dssp EEEEEC
T ss_pred CEEEEE
Confidence 998764
No 156
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=40.94 E-value=26 Score=32.37 Aligned_cols=30 Identities=27% Similarity=0.547 Sum_probs=27.9
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDE 1006 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~ 1006 (1077)
|-.|.+.+.+..|..++|++|++++|++..
T Consensus 19 G~~~~l~v~~~~TV~~LK~~I~~~~gip~~ 48 (114)
T 2kdi_A 19 GKTITLEVESSDTIDNVKSKIQDKEGIPPD 48 (114)
T ss_dssp CCEEEEECCTTCBHHHHHHHHHHHHCCCGG
T ss_pred CcEEEEEECCCCcHHHHHHHHHHHHCcChH
Confidence 788999999999999999999999999864
No 157
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=40.84 E-value=16 Score=32.18 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=28.5
Q ss_pred CcceEE-EeccCCcHHHHHHHHHHHhCCCcccccceEE
Q 037461 977 GEPFFL-VIHEGETLQEIKVRIQRKLQVPDEEFAKWKF 1013 (1077)
Q Consensus 977 GiPF~~-~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~ 1013 (1077)
|-+|.+ .|.+.+|+.++|++|++++||+. ++-|+
T Consensus 16 g~~~~i~~v~~~~TV~~lK~~I~~~~gip~---~~QkL 50 (90)
T 1v5t_A 16 GQEYSVTTLSEDDTVLDLKQFLKTLTGVLP---ERQKL 50 (90)
T ss_dssp TEEEEECSCCSSSBHHHHHHHHHHHTCCCT---TTCEE
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHHCcCH---HHeEE
Confidence 667778 89999999999999999999985 44554
No 158
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=40.79 E-value=32 Score=31.51 Aligned_cols=30 Identities=20% Similarity=0.474 Sum_probs=27.3
Q ss_pred CcceEEEecc-CCcHHHHHHHHHHHhCCCcc
Q 037461 977 GEPFFLVIHE-GETLQEIKVRIQRKLQVPDE 1006 (1077)
Q Consensus 977 GiPF~~~i~~-~E~~~~~k~ri~~~~~~~~~ 1006 (1077)
|-.|.+.+.+ ..|..++|++|++++|++..
T Consensus 40 g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~ 70 (111)
T 1we6_A 40 GQFMEITVQSLSENVGSLKEKIAGEIQIPAN 70 (111)
T ss_dssp SCCEEEEESCSSSBHHHHHHHHHHHTTCCTT
T ss_pred CcEEEEEecCCCCcHHHHHHHHHHHHCCCHH
Confidence 7788899998 99999999999999999853
No 159
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=40.47 E-value=25 Score=30.56 Aligned_cols=46 Identities=17% Similarity=0.281 Sum_probs=33.8
Q ss_pred C-cceEE-EeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCccc
Q 037461 977 G-EPFFL-VIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDI 1029 (1077)
Q Consensus 977 G-iPF~~-~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~~ 1029 (1077)
| -.|.+ .+.+..|..++|++|+++.|++.. ..++ +..+ +-|+|+..
T Consensus 17 g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~---~qrL--~~~g--k~L~d~~t 64 (89)
T 1wy8_A 17 GSKTCTIEDVSRKATIEELRERVWALFDVRPE---CQRL--FYRG--KQLENGYT 64 (89)
T ss_dssp CSCEEEEEEECTTCBHHHHHHHHHHHSCCCTT---TEEE--EETT--EECCSSSB
T ss_pred CCceEEEEecCCCCCHHHHHHHHHHHHCcChh---hEEE--EECC--eECCCCCC
Confidence 6 58889 599999999999999999999854 3343 3333 34666543
No 160
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=40.39 E-value=53 Score=29.05 Aligned_cols=52 Identities=15% Similarity=0.089 Sum_probs=36.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhccccCCCCccEEEEEEe-ccEEE-EecCCcccccc
Q 037461 877 VHTIRLPKQSTVGDVINDLKTKVELSQPDAELRLLEVF-YHKIY-KIFPLNEKIEN 930 (1077)
Q Consensus 877 ~~~~~v~k~~tv~dll~~l~~~~~~~~~~~~lRl~ev~-~~ki~-~~~~~~~~i~~ 930 (1077)
.+++.++.+.||.+|.++++.+.+++.+. .||+-.. .++.. .++..+.++.+
T Consensus 20 ~~~~~v~~~~TV~~lK~ki~~~~gip~~~--qrL~~~~~~g~~~~~l~~D~~tL~~ 73 (95)
T 1v6e_A 20 RSEKRYSRSLTIAEFKCKLELVVGSPASC--MELELYGADDKFYSKLDQEDALLGS 73 (95)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHTCSCTTT--CBCEEECSSSCEEEECCCSSSBTTS
T ss_pred eEEEEcCccCHHHHHHHHHHHHHCCCHHH--eEEEEeCCCCccccccCCCcCCHhH
Confidence 36789999999999999999999998766 4443322 34443 33455556654
No 161
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=39.79 E-value=30 Score=35.23 Aligned_cols=72 Identities=14% Similarity=0.238 Sum_probs=55.3
Q ss_pred EEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCCC
Q 037461 651 ILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGD 730 (1077)
Q Consensus 651 ~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~Gd 730 (1077)
+-||+|..+-. ++. +-|..+.+|.+|...|.+..|+|++..-.+|. + ..++...++....|++|+
T Consensus 106 MqI~VKtl~Gk--t~~----l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~------G---k~L~D~~tL~dygI~~gs 170 (189)
T 3q3f_A 106 GQIFVKTLTGK--TIT----LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNIQKES 170 (189)
T ss_dssp EEEEEECTTSC--EEE----EEECTTCBHHHHHHHHHHHHCCCGGGCCEEET------T---EECCTTCBGGGGTCCTTC
T ss_pred eeeeeecCCCC--EEE----EEeCCCCcHHHHHHHHHhccCCCHHHEEEEEC------C---EECCCCCCHHHCCCCCCC
Confidence 78899876533 222 46789999999999999999999988766653 2 234556789999999999
Q ss_pred EEEEEec
Q 037461 731 IICFQKS 737 (1077)
Q Consensus 731 Ii~fQ~~ 737 (1077)
.|-.-..
T Consensus 171 tI~Lvlr 177 (189)
T 3q3f_A 171 TLHLVLR 177 (189)
T ss_dssp EEEECCC
T ss_pred EEEEEEE
Confidence 9877544
No 162
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=39.11 E-value=30 Score=30.43 Aligned_cols=73 Identities=15% Similarity=0.257 Sum_probs=53.3
Q ss_pred cEEEEEeeeCCCCceEEeeeEE-EEecCCCchhhHHHHHHhcCCCCCCcEEE---EEEeecCCccccccccccccccccc
Q 037461 650 DILLFFKLYDPEKEELRYVGRL-FVKSTGKPMEYLPKLNEMAGYAPDEEIDL---YEEIKFEPSVMCEPIEKRCTFRASQ 725 (1077)
Q Consensus 650 ~~~~f~k~~d~~~~~l~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~l---yEEik~~p~~~ie~i~~~~tf~~~e 725 (1077)
.+-|++|+ . .+++. + -|..+.+|.+|...|.+..|+|++..-.+ |. + -.++...++....
T Consensus 7 ~m~i~Vk~-~--g~~~~----i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~------G---k~L~D~~~L~~~~ 70 (90)
T 1v5t_A 7 GLPIIVKW-G--GQEYS----VTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVK------G---KPAENDVKLGALK 70 (90)
T ss_dssp SCCEEEEE-T--TEEEE----ECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEET------T---EECCTTSBHHHHT
T ss_pred eEEEEEEE-C--CEEEE----EEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccC------C---cCcCCCCCHHHcC
Confidence 46788885 2 33332 4 46789999999999999999999888666 42 1 1244567888888
Q ss_pred CCCCCEEEEEecC
Q 037461 726 LEDGDIICFQKST 738 (1077)
Q Consensus 726 l~~GdIi~fQ~~~ 738 (1077)
|.+|+.|..=...
T Consensus 71 i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 71 LKPNTKIMMMGTR 83 (90)
T ss_dssp CCTTEEEEEECCC
T ss_pred CCCCCEEEEEecC
Confidence 9999998876543
No 163
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.43 E-value=49 Score=29.07 Aligned_cols=73 Identities=7% Similarity=0.046 Sum_probs=53.0
Q ss_pred EEEEEeeeCCCCceEEeeeEE-EEecCCCchhhHHHHHHh-cCCCCCCcEEEEEEeecCCcccccccccccccccccCCC
Q 037461 651 ILLFFKLYDPEKEELRYVGRL-FVKSTGKPMEYLPKLNEM-AGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLED 728 (1077)
Q Consensus 651 ~~~f~k~~d~~~~~l~~~g~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~ 728 (1077)
+-||+|--...+. ++.+ -|.++.+|.+|-..|.+. -|+|++..-..|.. . + ..++...|+....|++
T Consensus 11 M~I~Vk~~~g~~~----~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~---~-G---k~L~D~~tL~~y~i~~ 79 (88)
T 2dzj_A 11 YEVEILDAKTREK----LCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDP---K-G---KSLKDEDVLQKLPVGT 79 (88)
T ss_dssp EEEEEEESSSCCC----CEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESST---T-S---CCCCTTCBTTTSSCCS
T ss_pred EEEEEECCCCCEE----eeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecC---C-C---cCcCCCCCHHHcCCCC
Confidence 5677775543322 3556 789999999999999994 79998887655531 1 1 2456678898889999
Q ss_pred CCEEEE
Q 037461 729 GDIICF 734 (1077)
Q Consensus 729 GdIi~f 734 (1077)
|+.|.|
T Consensus 80 ~stl~~ 85 (88)
T 2dzj_A 80 TATLYF 85 (88)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 998877
No 164
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=35.48 E-value=31 Score=31.58 Aligned_cols=45 Identities=24% Similarity=0.503 Sum_probs=34.3
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCcc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTD 1028 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~ 1028 (1077)
|-.|.+.+.+..|+.++|++|++++|++.. +.|+ +..+ +-|+|+.
T Consensus 45 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~---~qrL--i~~G--k~L~D~~ 89 (111)
T 2ojr_A 45 GKTITLEVEPSDTIENVKAKIQDKEGIPPD---QQRL--IFAG--KQLEDGR 89 (111)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCTT---TEEE--EETT--EECCSSC
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCcCcc---cEEE--EECC--EECCCCC
Confidence 778899999999999999999999999853 4444 3333 3466644
No 165
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=35.29 E-value=28 Score=31.66 Aligned_cols=46 Identities=22% Similarity=0.356 Sum_probs=34.8
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCccc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDI 1029 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~~ 1029 (1077)
|--|.+.|.+..|..++|++|+++.|++... .|+ +..+ +-|+|+..
T Consensus 11 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~---QrL--i~~G--k~L~D~~t 56 (106)
T 3m62_B 11 KEKVPLDLEPSNTILETKTKLAQSISCEESQ---IKL--IYSG--KVLQDSKT 56 (106)
T ss_dssp CCEEEECCCTTSBHHHHHHHHHHTTTSCGGG---CEE--EETT--EECCTTSB
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCCChhh---EEE--EECC--EECCCcCC
Confidence 7789999999999999999999999998644 343 3333 34666543
No 166
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=35.25 E-value=32 Score=32.26 Aligned_cols=45 Identities=24% Similarity=0.314 Sum_probs=33.4
Q ss_pred cceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCccc
Q 037461 978 EPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDI 1029 (1077)
Q Consensus 978 iPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~~ 1029 (1077)
.-+.+.+.+.+|..++|++|+.+.||+-.+. ++ +..++ -|+|+..
T Consensus 12 tti~lev~~sdTV~~lK~kI~~~egIP~~qQ---rL--i~~Gk--~LeD~~T 56 (118)
T 2fnj_B 12 TTIFTDAKESSTVFELKRIVEGILKRPPEEQ---RL--YKDDQ--LLDDGKT 56 (118)
T ss_dssp EEEEEEEETTSBHHHHHHHHHHHHCCCGGGE---EE--EETTE--ECCTTSB
T ss_pred EEEEEEeCCcChHHHHHHHHHHHhCCCHHHe---EE--EECCe--ECCCCCC
Confidence 4578899999999999999999999987543 33 33444 3555543
No 167
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=34.83 E-value=42 Score=33.38 Aligned_cols=72 Identities=15% Similarity=0.252 Sum_probs=53.8
Q ss_pred EEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCCCE
Q 037461 652 LLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDI 731 (1077)
Q Consensus 652 ~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~GdI 731 (1077)
-||+|..+-. ++ .+-|..+.+|.+|...|.+..|+|++..-.+|.- ..++...++....+++|+.
T Consensus 2 qI~Vk~~~Gk--~~----~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~G---------k~L~D~~tL~~y~I~~gst 66 (169)
T 3l0w_B 2 QIFVKTLTGK--TI----TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAG---------KQLEDGRTLSDYNIQKEST 66 (169)
T ss_dssp EEEEEETTSC--EE----EEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETT---------EECCTTSBGGGGTCCTTCE
T ss_pred EEEEEeCCCC--EE----EEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECC---------ccccCcCcHHHcCCCCCCE
Confidence 3667765432 22 2457889999999999999999999988766632 2355678999999999999
Q ss_pred EEEEecC
Q 037461 732 ICFQKST 738 (1077)
Q Consensus 732 i~fQ~~~ 738 (1077)
|-.-...
T Consensus 67 I~Lvlrl 73 (169)
T 3l0w_B 67 LHLVLRL 73 (169)
T ss_dssp EEEEECC
T ss_pred EEEEEEe
Confidence 8877654
No 168
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=34.75 E-value=78 Score=29.47 Aligned_cols=52 Identities=10% Similarity=0.131 Sum_probs=36.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhccccCCCCccEEEEEEe-ccEEE-EecCCcccccc
Q 037461 877 VHTIRLPKQSTVGDVINDLKTKVELSQPDAELRLLEVF-YHKIY-KIFPLNEKIEN 930 (1077)
Q Consensus 877 ~~~~~v~k~~tv~dll~~l~~~~~~~~~~~~lRl~ev~-~~ki~-~~~~~~~~i~~ 930 (1077)
.+++.++.+.||.+|.++|..+.++++.. .||.-.. ++++. .+...+.++.+
T Consensus 19 ~~e~~v~~~~TV~~lK~ki~~~~Gip~~~--qrL~~~g~~~~~~~~l~~D~~tL~~ 72 (122)
T 1t0y_A 19 PMEKKYPAGMSLNDLKKKLELVVGTTVDS--MRIQLFDGDDQLKGELTDGAKSLKD 72 (122)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHCCCTTT--EEEEEECSSSSEEEECCCCSSBTTT
T ss_pred cEEEEeCCCCcHHHHHHHHHHHhCCCHHH--eEEEEecCCCccccccCCCcCCHHH
Confidence 35789999999999999999999998665 5665433 34543 33355555544
No 169
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=34.38 E-value=41 Score=30.53 Aligned_cols=58 Identities=10% Similarity=-0.026 Sum_probs=46.8
Q ss_pred EEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCCCEEEEEe
Q 037461 670 RLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICFQK 736 (1077)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~GdIi~fQ~ 736 (1077)
.+-|..+.+|.+|...|.+..|+|++..-.+|.- . .++...|+....|++|..|.+=+
T Consensus 33 ~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~G------K---iL~D~~TL~~y~I~~gsti~vl~ 90 (100)
T 1wju_A 33 LLETRLHITGRELRSKIAETFGLQENYIKIVINK------K---QLQLGKTLEEQGVAHNVKAMVLE 90 (100)
T ss_dssp EEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETT------E---ECCTTSBHHHHTCCSSEEEEEEC
T ss_pred EEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCC------e---ECCCCCcHHHcCCCCCCEEEEEE
Confidence 3568899999999999999999999988776652 1 24666899999999999876544
No 170
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=34.10 E-value=82 Score=28.82 Aligned_cols=32 Identities=13% Similarity=0.108 Sum_probs=29.9
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcccc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEEF 1008 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f 1008 (1077)
+.++-+.+.+..|..++|++|+.+.|+|-..-
T Consensus 36 ~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~Q 67 (105)
T 4dbg_A 36 TVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQ 67 (105)
T ss_dssp CEEEEEEECTTCBHHHHHHHHHHHHCCCGGGE
T ss_pred CceEEEEECCcChHHHHHHHHHHHhCCCHHHE
Confidence 78999999999999999999999999998654
No 171
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=33.63 E-value=34 Score=31.05 Aligned_cols=47 Identities=15% Similarity=0.111 Sum_probs=34.6
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCcccc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDIV 1030 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~~~ 1030 (1077)
|--|-+.|.++.|..++|++|+++.|+|.. ..|+ |..++ -|+|+.-+
T Consensus 29 ~~~~~lev~~~~TV~~lK~kI~~k~gip~~---qQrL--I~~GK--iL~D~~TL 75 (100)
T 1wju_A 29 DRKNLLETRLHITGRELRSKIAETFGLQEN---YIKI--VINKK--QLQLGKTL 75 (100)
T ss_dssp SSSEEEEEESSSBHHHHHHHHHHHTTCCST---TCEE--EETTE--ECCTTSBH
T ss_pred CcEEEEEeCCcCHHHHHHHHHHHHHCcCHH---HeEE--EeCCe--ECCCCCcH
Confidence 456889999999999999999999999863 3343 44444 36665443
No 172
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=33.08 E-value=18 Score=32.71 Aligned_cols=46 Identities=13% Similarity=0.216 Sum_probs=34.2
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCccc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDI 1029 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~~ 1029 (1077)
|-.|.+.|.+..|..++|++|++++|++... .|+ +.. ++-|+|+..
T Consensus 37 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~---QrL--i~~--Gk~L~D~~t 82 (101)
T 3m63_B 37 QDKWEVNVAPESTVLQFKEAINKANGIPVAN---QRL--IYS--GKILKDDQT 82 (101)
T ss_dssp SCCCCBCCCTTSBHHHHHHHHHHHHSCCSTT---CCE--EET--TEECCTTSB
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHHHCcChHH---EEE--EEC--CEECCCcCc
Confidence 6677889999999999999999999998644 333 223 345666543
No 173
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=32.41 E-value=53 Score=29.15 Aligned_cols=48 Identities=15% Similarity=0.346 Sum_probs=35.2
Q ss_pred ceEEEEEEcCCCCeEEEEEEEcCCCCCHHHHHHHHhhccccCCCCccEEEEEEeccEE
Q 037461 861 KTLKVAFHHATKDEVSVHTIRLPKQSTVGDVINDLKTKVELSQPDAELRLLEVFYHKI 918 (1077)
Q Consensus 861 k~~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~~~~~~~~lRl~ev~~~ki 918 (1077)
-+|+|.|- + +.+.+-++.+.||.||.+.|..+.+++.+..+| + +.+|.
T Consensus 18 ~~i~Vk~~--g----~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL--~--~~Gk~ 65 (95)
T 1v86_A 18 VDLKIIWN--K----TKHDVKVPLDSTGSELKQKIHSITGLPPAMQKV--M--YKGLV 65 (95)
T ss_dssp EEEEEEET--T----EEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCC--B--SSSBC
T ss_pred EEEEEEEC--C----EEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEE--E--ECCee
Confidence 45666652 2 356789999999999999999999988765343 3 46654
No 174
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=32.31 E-value=27 Score=31.68 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=34.4
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCccc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDI 1029 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~~ 1029 (1077)
|-.|.+.|.+..|..++|++|+++.|++-. ..|+ +..+ +-|+|+..
T Consensus 33 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~---~qrL--i~~G--k~L~D~~t 78 (106)
T 1ttn_A 33 GKDLKLVVRSTDTVFHMKRRLHAAEGVEPG---SQRW--FFSG--RPLTDKMK 78 (106)
T ss_dssp TEEEEEEECTTSHHHHHHHHHHHTTCCCST---TCEE--EETT--EECCTTSH
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHHCcCcc---cEEE--EECC--EECCCCCc
Confidence 778889999999999999999999999854 3343 2333 34666543
No 175
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=32.14 E-value=40 Score=34.30 Aligned_cols=46 Identities=24% Similarity=0.489 Sum_probs=35.0
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCccc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDI 1029 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~~ 1029 (1077)
|-.|.+.|.+.+|..++|++|+++.|++..+ .|+ +..+ +-|+|+..
T Consensus 115 Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~---QrL--i~~G--k~L~D~~t 160 (189)
T 3q3f_A 115 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQ---QRL--IFAG--KQLEDGRT 160 (189)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGG---CCE--EETT--EECCTTCB
T ss_pred CCEEEEEeCCCCcHHHHHHHHHhccCCCHHH---EEE--EECC--EECCCCCC
Confidence 7889999999999999999999999998754 232 2333 34666543
No 176
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=31.98 E-value=39 Score=31.64 Aligned_cols=31 Identities=26% Similarity=0.346 Sum_probs=27.5
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCccc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEE 1007 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~ 1007 (1077)
..=+.+.+.+.+|..++|++|+.+.|++-..
T Consensus 11 ktTI~ldve~sdTV~~lK~kI~~~~giPp~q 41 (118)
T 4ajy_B 11 KTTIFTDAKESSTVFELKRIVEGILKRPPDE 41 (118)
T ss_dssp TEEEEEEEETTSBHHHHHHHHHHHHCCCGGG
T ss_pred CEEEEEEcCCCChHHHHHHHHHHHHCCCHHH
Confidence 5567889999999999999999999998754
No 177
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=31.89 E-value=44 Score=28.52 Aligned_cols=46 Identities=24% Similarity=0.313 Sum_probs=33.9
Q ss_pred CcceEEEeccCCcHHHHHHHHHHH---hCCCcccccceEEEEEecCCCcccCCccc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRK---LQVPDEEFAKWKFAFLSLGRPEYLQDTDI 1029 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~---~~~~~~~f~k~k~a~~~~~~~~~~~~~~~ 1029 (1077)
|-.|.+.+.+..|..++|++|+++ .|++. +..++ +..+ +-|+|+..
T Consensus 15 g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~---~~qrL--i~~G--k~L~D~~t 63 (85)
T 2wyq_A 15 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPV---AGQKL--IYAG--KILSDDVP 63 (85)
T ss_dssp SCEEEEEECTTSBHHHHHHHHHHHHCTTTCCG---GGEEE--EETT--EECCTTSB
T ss_pred CCEEEEEECCCCCHHHHHHHHHhhccccCCCH---HHeEE--EECC--EECcCCCC
Confidence 778889999999999999999998 67774 44554 3333 34666543
No 178
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=36.76 E-value=11 Score=31.81 Aligned_cols=55 Identities=15% Similarity=0.221 Sum_probs=43.0
Q ss_pred EEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCCCEEEE
Q 037461 671 LFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICF 734 (1077)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~GdIi~f 734 (1077)
+-|..+.+|++|...|.+..|+|++..-.+|.- ..++...++....+.+|+.|..
T Consensus 15 ~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~g---------k~L~d~~tL~~~~i~~g~~i~l 69 (76)
T 3b1l_X 15 VEVDSDTSILQLKEVVAKQQGVPADQLRVIFAG---------KELPNHLTVQNCDLEQQSIVHI 69 (76)
Confidence 456788999999999999999998887666642 1244567888888999997754
No 179
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=36.45 E-value=11 Score=31.76 Aligned_cols=30 Identities=13% Similarity=0.305 Sum_probs=27.3
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDE 1006 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~ 1006 (1077)
|-.|.+.+.+..|..++|++|++++|++..
T Consensus 10 g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~ 39 (76)
T 3b1l_X 10 SYGFPVEVDSDTSILQLKEVVAKQQGVPAD 39 (76)
Confidence 778889999999999999999999999853
No 180
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=29.78 E-value=51 Score=28.89 Aligned_cols=28 Identities=14% Similarity=0.290 Sum_probs=24.9
Q ss_pred eEEEeccCCcHHHHHHHHHHHhCCCccc
Q 037461 980 FFLVIHEGETLQEIKVRIQRKLQVPDEE 1007 (1077)
Q Consensus 980 F~~~i~~~E~~~~~k~ri~~~~~~~~~~ 1007 (1077)
+-+++.+|=+|++++++|++||+++..+
T Consensus 16 vairvp~~~~y~~L~~~l~~kL~l~~~~ 43 (83)
T 1oey_A 16 VVMKTQPGLPYSQVRDMVSKKLELRLEH 43 (83)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcce
Confidence 5688899999999999999999998543
No 181
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=29.76 E-value=1.1e+02 Score=28.84 Aligned_cols=62 Identities=8% Similarity=0.162 Sum_probs=42.3
Q ss_pred eEEEEEEcCCCCeEEEEEEEcCCCCCHHHHHHHHhhccc------cCCCCccEEEEEEeccEEEEecCCccccccc
Q 037461 862 TLKVAFHHATKDEVSVHTIRLPKQSTVGDVINDLKTKVE------LSQPDAELRLLEVFYHKIYKIFPLNEKIENI 931 (1077)
Q Consensus 862 ~~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~------~~~~~~~lRl~ev~~~ki~~~~~~~~~i~~i 931 (1077)
+++|++-...-+ .+++-++.+.||.+|-+.++...+ .+.+...+|| ++.||+. ..+.++.+.
T Consensus 17 ~m~I~vktl~G~---~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrL--Iy~GK~L---eD~~TL~~y 84 (125)
T 2gow_A 17 MINLRLILVSGK---TKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRL--IYQGRFL---HGNVTLGAL 84 (125)
T ss_dssp CEEEEEECTTSC---EEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEE--ESSSSEE---ESSCBTGGG
T ss_pred eEEEEEEeCCCC---EEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEE--EECCcCC---CCCCcHHHc
Confidence 366666543322 568899999999999999998443 3222356888 7888864 456666653
No 182
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=29.76 E-value=39 Score=30.76 Aligned_cols=30 Identities=27% Similarity=0.364 Sum_probs=25.8
Q ss_pred CcceEEEec-cCCcHHHHHHHHHHHhCCCccc
Q 037461 977 GEPFFLVIH-EGETLQEIKVRIQRKLQVPDEE 1007 (1077)
Q Consensus 977 GiPF~~~i~-~~E~~~~~k~ri~~~~~~~~~~ 1007 (1077)
|.- .+.|. +..|+.++|++|+.++|++...
T Consensus 17 G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~ 47 (107)
T 1wf9_A 17 GLE-RVSVDGPHITVSQLKTLIQDQLQIPIHN 47 (107)
T ss_dssp CEE-EEEECCTTSBHHHHHHHHHHHSCCCTTT
T ss_pred CCE-EEEECCCCCcHHHHHHHHHHHhCcCccc
Confidence 643 67888 9999999999999999998655
No 183
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=29.57 E-value=45 Score=30.69 Aligned_cols=58 Identities=16% Similarity=0.174 Sum_probs=46.5
Q ss_pred EEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCCCEEEEEec
Q 037461 671 LFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICFQKS 737 (1077)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~GdIi~fQ~~ 737 (1077)
+-|+.+.+|.+|...|.+..|+|++..-.+|. + ..++...++....+.+|++|..-..
T Consensus 50 l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~------G---k~L~D~~tL~~y~i~~g~~i~lv~r 107 (115)
T 1we7_A 50 FTLPLTDQVSVIKVKIHEATGMPAGKQKLQYE------G---IFIKDSNSLAYYNMASGAVIHLALK 107 (115)
T ss_dssp EEECSCSBTHHHHHHHHHHSSCCTTTEEEEET------T---EEECTTSBHHHHTCCSSCEEEEEEC
T ss_pred EEECCCCCHHHHHHHHHHHHCCChHHEEEEEC------C---EECCCCCCHHHCCCCCCCEEEEEEE
Confidence 45788999999999999999999988877763 2 1244567888889999999887644
No 184
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=28.77 E-value=46 Score=29.40 Aligned_cols=46 Identities=26% Similarity=0.365 Sum_probs=33.8
Q ss_pred CcceEEEeccCCcHHHHHHHHHHH---hCCCcccccceEEEEEecCCCcccCCccc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRK---LQVPDEEFAKWKFAFLSLGRPEYLQDTDI 1029 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~---~~~~~~~f~k~k~a~~~~~~~~~~~~~~~ 1029 (1077)
|-.|.+.+.+..|..++|++|+++ .|++. +..|+ +..+ +-|+|+..
T Consensus 10 g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~---~~qrL--i~~G--k~L~D~~t 58 (95)
T 1uel_A 10 QQTFKIDIDPEETVKALKEKIESEKGKDAFPV---AGQKL--IYAG--KILNDDTA 58 (95)
T ss_dssp CCEEEEECCTTSBHHHHHHHHHHHHCTTTCCT---TTEEE--EETT--EECCTTSB
T ss_pred CCEEEEEECCCCHHHHHHHHHHhhcccCCCCh---hhEEE--EECC--EECCCcCc
Confidence 778899999999999999999999 57774 34444 3333 34666543
No 185
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=28.69 E-value=1e+02 Score=26.89 Aligned_cols=76 Identities=11% Similarity=0.069 Sum_probs=53.4
Q ss_pred CcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhc--CCCCCCcEEEEEEeecCCcccccccccccccccc--
Q 037461 649 EDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMA--GYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRAS-- 724 (1077)
Q Consensus 649 ~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~-- 724 (1077)
..+.|++|.-+-.. +--.+-+..+.+|.+|...|.+.. |+|++..-.+|. + ..++...++...
T Consensus 6 ~~m~i~Vk~~~~~~----~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~------G---k~L~D~~tL~~~~~ 72 (93)
T 1wgd_A 6 SGVTLLVKSPNQRH----RDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYS------G---KLLLDHQCLRDLLP 72 (93)
T ss_dssp CCCEEEEECSSSSC----CCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEET------T---EECCSSSCHHHHSC
T ss_pred cEEEEEEEeCCCCe----EEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEEC------C---EECcCcCCHHHHhc
Confidence 34778888654321 111223458999999999999998 999888766664 2 234455788888
Q ss_pred cCCCCCEEEEEec
Q 037461 725 QLEDGDIICFQKS 737 (1077)
Q Consensus 725 el~~GdIi~fQ~~ 737 (1077)
.+.+|+.|..-..
T Consensus 73 ~i~~~~~i~lv~~ 85 (93)
T 1wgd_A 73 KQEKRHVLHLVCN 85 (93)
T ss_dssp SSSCSEEEEEECC
T ss_pred CCCCCCEEEEEeC
Confidence 8999998877544
No 186
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=28.37 E-value=12 Score=38.59 Aligned_cols=57 Identities=23% Similarity=0.176 Sum_probs=0.0
Q ss_pred EEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCCCEEEEE
Q 037461 670 RLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICFQ 735 (1077)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~GdIi~fQ 735 (1077)
++-|.++.+++.|+...+++.|+|+++---+|.- ..|.+..|-...++.|||+|=+-
T Consensus 34 ~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDG---------qRI~dddTPadL~MEDGDtIDV~ 90 (227)
T 3v7o_A 34 FFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDG---------IRIQADQTPEDLDMEDNDIIEAH 90 (227)
T ss_dssp ------------------------------------------------------------------
T ss_pred EEEEccCChHHHHHHHHHHHhCCCccceEEEECC---------EecCCCCCHHHcCCCCCCEEEEE
Confidence 4568899999999999999999998665555552 35677889999999999987543
No 187
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=27.82 E-value=57 Score=28.50 Aligned_cols=45 Identities=16% Similarity=0.237 Sum_probs=32.2
Q ss_pred CcceEEEeccC-----CcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCcc
Q 037461 977 GEPFFLVIHEG-----ETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTD 1028 (1077)
Q Consensus 977 GiPF~~~i~~~-----E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~ 1028 (1077)
|-.|-+.+.+. .|+.++|++|++++|++. ++.|+ +.. ++-|.|++
T Consensus 16 ~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~---~~qrL--~~~--Gk~L~D~~ 65 (92)
T 1wxv_A 16 NEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQ---SFQKL--IFK--GKSLKEME 65 (92)
T ss_dssp SSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCT---TTCEE--EET--TEEECCSS
T ss_pred CEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCH---HHEEE--EEC--CeecCCCc
Confidence 44667888885 999999999999999985 34454 223 34466644
No 188
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=27.80 E-value=58 Score=29.21 Aligned_cols=45 Identities=18% Similarity=0.295 Sum_probs=33.2
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCccc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDI 1029 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~~ 1029 (1077)
|. |.+.|.+..|..++|++|+++.|++. ++.|+ +..+ +-|+|+..
T Consensus 32 g~-~~l~v~~~~TV~~LK~~I~~~~gip~---~~QrL--i~~G--k~L~D~~t 76 (100)
T 1yqb_A 32 DK-EDFSVTDTCTIQQLKEEISQRFKAHP---DQLVL--IFAG--KILKDPDS 76 (100)
T ss_dssp CE-EEEEEETTCBHHHHHHHHHHHHTCCG---GGEEE--EETT--EECCTTSB
T ss_pred Cc-EEEEECCCCcHHHHHHHHHHHHCcCh---hhEEE--EECC--EECCCcCc
Confidence 53 78899999999999999999999985 34454 3333 34666543
No 189
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=27.58 E-value=72 Score=27.99 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=28.9
Q ss_pred CCCeEEEecccCCHHHHHHHHHHHcCCCCCCcEEEee
Q 037461 774 EDDFCLEMSKLYTYDDVVERVAQQLGLDDPSKIRLTS 810 (1077)
Q Consensus 774 ~~~f~~~ls~~~~Y~~~~~~v~~~l~~~~p~~lr~~~ 810 (1077)
++-|.+.|+..++|.||..+++.||.++ ...+..+.
T Consensus 21 DDIiAIrvP~di~~~~L~dKi~~RLk~~-~~~l~~yk 56 (85)
T 1ip9_A 21 DDIFALMLKGDTTYKELRSKIAPRIDTD-NFKLQTKL 56 (85)
T ss_dssp TCCEEEEECSCCCHHHHHHHHHHHHTSS-CEEEEECC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhccc-ceEEEEec
Confidence 4579999999999999999999999973 34444333
No 190
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=27.20 E-value=31 Score=30.38 Aligned_cols=47 Identities=21% Similarity=0.259 Sum_probs=33.3
Q ss_pred CcceEEEec--cCCcHHHHHHHH-HHHhCCCcccccceEEEEEecCCCcccCCcccc
Q 037461 977 GEPFFLVIH--EGETLQEIKVRI-QRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDIV 1030 (1077)
Q Consensus 977 GiPF~~~i~--~~E~~~~~k~ri-~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~~~ 1030 (1077)
|--|.+.|. +.+|..++|++| +.+.|+|..+ .|+ +..+ +-|+|+..+
T Consensus 11 g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~---QrL--i~~G--k~L~D~~tL 60 (87)
T 2lxa_A 11 APKFSIEHDFSPSDTILQIKQHLISEEKASHISE---IKL--LLKG--KVLHDNLFL 60 (87)
T ss_dssp SSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTT---EEE--EETT--EECCTTCBH
T ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHH---EEE--EECC--EECcCcCCH
Confidence 655777655 999999999999 9999988644 343 3334 447776544
No 191
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=27.16 E-value=1.1e+02 Score=26.71 Aligned_cols=60 Identities=12% Similarity=0.246 Sum_probs=0.0
Q ss_pred cccceEEEEEEcCCCCeEEEEEEEcCCCCCHHHHHHHHhhccccCCCCccEEEEEEeccEEEEecCCc-ccccccc
Q 037461 858 QCLKTLKVAFHHATKDEVSVHTIRLPKQSTVGDVINDLKTKVELSQPDAELRLLEVFYHKIYKIFPLN-EKIENIN 932 (1077)
Q Consensus 858 E~~k~~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~~~~~~~~lRl~ev~~~ki~~~~~~~-~~i~~i~ 932 (1077)
+..-+|+|.+++.. .+.+-|+.+.||.+|.+++..+. ....|| +++|| ++..+ ..+.+.+
T Consensus 5 ~~~m~i~Vk~~~g~-----~~~~~v~~~~TV~~LK~~i~~~~-----~~~qrL--i~~Gk---~L~D~~~tL~~y~ 65 (95)
T 1wia_A 5 SSGINVRLKFLNDT-----EELAVARPEDTVGTLKSKYFPGQ-----ESQMKL--IYQGR---LLQDPARTLSSLN 65 (95)
T ss_dssp CCSEEEEEEETTTE-----EEEEEECSSSBHHHHHHHHSSST-----TTTCEE--EETTE---ECCCSSCBTTTTT
T ss_pred CCeEEEEEEeCCCC-----EEEEEECCCCcHHHHHHHHHhhC-----cCcEEE--EECCE---EccCCcCCHHHcC
No 192
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=26.95 E-value=46 Score=33.04 Aligned_cols=31 Identities=26% Similarity=0.548 Sum_probs=28.3
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCccc
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEE 1007 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~ 1007 (1077)
|-.|.+.+.+..|..++|++|+++.|++...
T Consensus 10 Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~ 40 (169)
T 3l0w_B 10 GKTITLEVESSDTIDNVKSKIQDKEGIPPDQ 40 (169)
T ss_dssp SCEEEEECCTTCBHHHHHHHHHHHHCCCTTT
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCcCHHH
Confidence 7788999999999999999999999998744
No 193
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=26.40 E-value=52 Score=29.70 Aligned_cols=43 Identities=19% Similarity=0.298 Sum_probs=32.2
Q ss_pred eEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEEEecCCCcccCCccc
Q 037461 980 FFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDI 1029 (1077)
Q Consensus 980 F~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~~~~~~~~~~~~~~~ 1029 (1077)
|.+.|.+..|..++|++|++++|++- ++.|+ +..+ +-|+|+..
T Consensus 29 ~~l~v~~~~TV~~LK~~I~~~~gip~---~~qrL--i~~G--k~L~D~~t 71 (106)
T 1wx7_A 29 EDFSVTDTCTIQQLKEEISQRFKAHP---DQLVL--IFAG--KILKDPDS 71 (106)
T ss_dssp EEEEEETTCCHHHHHHHHHHHHTCCT---TTEEE--EETT--EECCTTSC
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcCh---hhEEE--EECC--EECCCcCc
Confidence 78899999999999999999999984 34554 3333 34666543
No 194
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=25.87 E-value=74 Score=28.76 Aligned_cols=27 Identities=19% Similarity=0.491 Sum_probs=24.4
Q ss_pred CCCeEEEecccCCHHHHHHHHHHHcCC
Q 037461 774 EDDFCLEMSKLYTYDDVVERVAQQLGL 800 (1077)
Q Consensus 774 ~~~f~~~ls~~~~Y~~~~~~v~~~l~~ 800 (1077)
++-|.|.++..++|++|..+|.++|++
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~~ 48 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKISN 48 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHcC
Confidence 346999999999999999999999985
No 195
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=25.80 E-value=40 Score=29.15 Aligned_cols=29 Identities=10% Similarity=0.196 Sum_probs=24.8
Q ss_pred eEEEeccCCcHHHHHHHHHHHhCCCcccc
Q 037461 980 FFLVIHEGETLQEIKVRIQRKLQVPDEEF 1008 (1077)
Q Consensus 980 F~~~i~~~E~~~~~k~ri~~~~~~~~~~f 1008 (1077)
|.+.+.+..||++++++|+++++++...|
T Consensus 16 ~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~ 44 (80)
T 2pjh_A 16 KRITATKRETAATFLKKVAKEFGFQNNGF 44 (80)
T ss_dssp EECCCCSSCCHHHHHHHHHHHTCCCTTTC
T ss_pred EEEEcCCcChHHHHHHHHHHHcCCCCCcc
Confidence 55667789999999999999999987555
No 196
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=25.67 E-value=57 Score=28.57 Aligned_cols=45 Identities=13% Similarity=0.164 Sum_probs=32.8
Q ss_pred ceEEEeccCCcHHHHHHHHHHHh--CCCcccccceEEEEEecCCCcccCCcccc
Q 037461 979 PFFLVIHEGETLQEIKVRIQRKL--QVPDEEFAKWKFAFLSLGRPEYLQDTDIV 1030 (1077)
Q Consensus 979 PF~~~i~~~E~~~~~k~ri~~~~--~~~~~~f~k~k~a~~~~~~~~~~~~~~~~ 1030 (1077)
+|.+.+.+.+|..++|++|++++ |++. ++.|+ +.. ++-|+|+..+
T Consensus 21 ~~~v~v~~~~TV~~lK~~I~~~~~~~i~~---~~QrL--i~~--Gk~L~D~~tL 67 (93)
T 1wgd_A 21 DLELSGDRGWSVGHLKAHLSRVYPERPRP---EDQRL--IYS--GKLLLDHQCL 67 (93)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHSTTCCCT---TTCEE--EET--TEECCSSSCH
T ss_pred EEEEecCCCCcHHHHHHHHHHHhcCCCCh---HHeEE--EEC--CEECcCcCCH
Confidence 67777889999999999999999 9875 34454 223 4457666543
No 197
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=25.15 E-value=63 Score=27.05 Aligned_cols=35 Identities=11% Similarity=0.152 Sum_probs=30.7
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEE
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFA 1014 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a 1014 (1077)
|-+..|.|++..+|+.+++...+|.|++. +..+|-
T Consensus 11 g~~v~~~v~~~t~l~kl~~~y~~~~gi~~---~~~rf~ 45 (72)
T 1wm3_A 11 GSVVQFKIKRHTPLSKLMKAYCERQGLSM---RQIRFR 45 (72)
T ss_dssp SCEEEEEECTTSCTHHHHHHHHHHHTCCT---TTCEEE
T ss_pred CCEEEEEECCCChHHHHHHHHHHHhCCCc---ceEEEE
Confidence 88999999999999999999999999986 445553
No 198
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=25.14 E-value=90 Score=27.76 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=31.4
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEE
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAF 1015 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~ 1015 (1077)
|-++.|.|++..+|..+++.+++|.|++. +..+|-+
T Consensus 17 g~~i~~~v~~~t~l~kl~~~y~~~~gi~~---~~~rf~F 52 (94)
T 2io1_B 17 GSVVQFKIKRHTPLSKLMKAYCERQGLSM---RQIRFRF 52 (94)
T ss_dssp SCEEEEEEETTSCTHHHHHHHHHHHTCCG---GGEEEEE
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHhCCCc---ccEEEEE
Confidence 77899999999999999999999999986 4566643
No 199
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=24.42 E-value=1.1e+02 Score=27.86 Aligned_cols=48 Identities=15% Similarity=0.093 Sum_probs=40.7
Q ss_pred ceEEEEEecCCCCCCCeEEEecccCCHHHHHHHHHHHcCCCCCCcEEEee
Q 037461 761 RQVVHFRSLEKPKEDDFCLEMSKLYTYDDVVERVAQQLGLDDPSKIRLTS 810 (1077)
Q Consensus 761 r~~v~f~~~~~~~~~~f~~~ls~~~~Y~~~~~~v~~~l~~~~p~~lr~~~ 810 (1077)
|+.|.|++..... ..+++.+...+|=.+|-++|+++.|+ +|+.-|+..
T Consensus 24 ~l~v~v~d~~s~~-~~i~l~V~ps~TV~~LK~~I~~k~Gi-pp~~QRli~ 71 (105)
T 4dbg_A 24 RLWVSVEDAQMHT-VTIWLTVRPDMTVASLKDMVFLDYGF-PPVLQQWVI 71 (105)
T ss_dssp EEEEEEEESSSCC-EEEEEEECTTCBHHHHHHHHHHHHCC-CGGGEEEEE
T ss_pred EEEEEEEccCCCC-ceEEEEECCcChHHHHHHHHHHHhCC-CHHHEEEec
Confidence 8889999875422 46999999999999999999999997 699999664
No 200
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=24.24 E-value=1.1e+02 Score=26.72 Aligned_cols=59 Identities=7% Similarity=0.104 Sum_probs=40.8
Q ss_pred EEEecCCCchhhHHHHHHhcCCCCCCcEE-EEEEeecCCcccccccccccccccccCCCCCEEEE
Q 037461 671 LFVKSTGKPMEYLPKLNEMAGYAPDEEID-LYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICF 734 (1077)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-lyEEik~~p~~~ie~i~~~~tf~~~el~~GdIi~f 734 (1077)
+-++..-++..|+..+.+..+++.. +.. .+=.+. .++ -.+.....+....+.|||+|..
T Consensus 21 LRIP~~~tvK~Li~~l~ea~~l~~~-~~~~~~irv~-NK~---~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 21 LRLSDYHPVKKVIDIAWQAQSVSMP-PREGHWIRVV-NKD---KVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEETTSBTTHHHHHHHHHSCCCSC-CCTTCEEEEG-GGT---EEEETTSBTGGGTCCTTCEEEE
T ss_pred EECCCchhHHHHHHHHHHHhCCCcC-CCCCCEEEEe-cCC---EEEcCCCEEeeCCcCCCCEEEE
Confidence 4578889999999999999999831 122 222332 122 2355667888888999999863
No 201
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=24.23 E-value=93 Score=27.51 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=31.6
Q ss_pred CcceEEEeccCCcHHHHHHHHHHHhCCCcccccceEEEE
Q 037461 977 GEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAF 1015 (1077)
Q Consensus 977 GiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f~k~k~a~ 1015 (1077)
|-+..|.|++..+|+.+++..++|.|++. +..+|-+
T Consensus 15 g~~v~~~vk~~t~l~kl~~~y~~~~gi~~---~~~rf~F 50 (91)
T 2io0_B 15 GSVVQFKIKRHTPLSKLMKAYCERQGLSM---RQIRFRF 50 (91)
T ss_dssp SCEEEEEEETTSCTHHHHHHHHHHTTCCS---TTEEEEE
T ss_pred CCEEEEEECCCChHHHHHHHHHHHhCCCc---ccEEEEE
Confidence 88999999999999999999999999986 4566644
No 202
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=23.94 E-value=1e+02 Score=27.69 Aligned_cols=72 Identities=6% Similarity=0.063 Sum_probs=49.0
Q ss_pred CcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhc-CCCC-CCcEEEEEEeecCCcccccccccccccccc--
Q 037461 649 EDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMA-GYAP-DEEIDLYEEIKFEPSVMCEPIEKRCTFRAS-- 724 (1077)
Q Consensus 649 ~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~l~lyEEik~~p~~~ie~i~~~~tf~~~-- 724 (1077)
..+-||+|..+-....+ .+-|..+.+|.+|...|.+.. |.|+ +..-.+|. + ..++...|+...
T Consensus 22 ~~m~I~VK~~~g~~~~i----~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~------G---k~L~D~~tL~~y~~ 88 (99)
T 2kdb_A 22 HPVTLIIKAPNQKYSDQ----TISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYS------G---RLLPDHLQLKDILR 88 (99)
T ss_dssp -CEEEEEECTTSSSCCE----EEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEET------T---EEECTTSBTHHHHT
T ss_pred CeEEEEEEcCCCCEEEE----EEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEEC------C---EECCCCCCHHHHhc
Confidence 45899999765543333 344689999999999999864 6664 65555553 2 134556788877
Q ss_pred cCCCCCEEE
Q 037461 725 QLEDGDIIC 733 (1077)
Q Consensus 725 el~~GdIi~ 733 (1077)
.|++|++|.
T Consensus 89 ~I~~~~tih 97 (99)
T 2kdb_A 89 KQDEYHMVH 97 (99)
T ss_dssp TTCSEEEEE
T ss_pred CCCCCCEEE
Confidence 888988874
No 203
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=23.62 E-value=17 Score=34.41 Aligned_cols=58 Identities=16% Similarity=0.249 Sum_probs=0.0
Q ss_pred EEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCCCEEEEEec
Q 037461 671 LFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICFQKS 737 (1077)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~GdIi~fQ~~ 737 (1077)
+-|..+.+|.+|...|.+..|+|++..-.+|.- ..++...|+....|.+|+.|..-..
T Consensus 15 l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~G---------k~L~D~~tL~~~~I~~gsti~l~~r 72 (128)
T 3u5e_m 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAG---------KQLEDGRTLSDYNIQKESTLHLVLR 72 (128)
T ss_dssp -------------------------------------------------------------------
T ss_pred EEeCCCCCHHHHHHHHHHHhCcChHHEEEEECC---------EECCCCCchhhhccCCCCEEEEEEE
Confidence 457788999999999999999999887666642 2345567888888999997765443
No 204
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=23.42 E-value=2.5e+02 Score=24.45 Aligned_cols=61 Identities=15% Similarity=0.175 Sum_probs=40.5
Q ss_pred eEEEEEEcCCCCeEEEEEEEcCCCCCHHHHHHHH-hhccccCCCCccEEEEEEeccEEEEecCCcccccccc
Q 037461 862 TLKVAFHHATKDEVSVHTIRLPKQSTVGDVINDL-KTKVELSQPDAELRLLEVFYHKIYKIFPLNEKIENIN 932 (1077)
Q Consensus 862 ~~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l-~~~~~~~~~~~~lRl~ev~~~ki~~~~~~~~~i~~i~ 932 (1077)
++.|.++.... . .+++-++.+.||.+|-+.+ +.+-+++.+. .||+ +.||+ +..+..+.+.+
T Consensus 3 qI~VKtl~g~~--~-~i~v~v~~~~TV~~lK~~I~~~~~gip~~~--QrLi--~~Gk~---L~D~~tL~~y~ 64 (87)
T 2lxa_A 3 HLTLKKIQAPK--F-SIEHDFSPSDTILQIKQHLISEEKASHISE--IKLL--LKGKV---LHDNLFLSDLK 64 (87)
T ss_dssp EEEEEECSSSC--E-ECCEECCTTCBHHHHHHHHHHTTSCSSSTT--EEEE--ETTEE---CCTTCBHHHHC
T ss_pred EEEEEcCCCCE--E-EEEEcCCCCCcHHHHHHHHHHHhcCCChHH--EEEE--ECCEE---CcCcCCHHHcC
Confidence 45566655432 1 2344567999999999999 8887876655 6765 57754 56666776643
No 205
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=23.39 E-value=2.9e+02 Score=25.52 Aligned_cols=61 Identities=8% Similarity=0.177 Sum_probs=40.7
Q ss_pred EEEEEEcCCCCeEEEEEEEcCCCCCHHHHHHHHhhccc------cCCCCccEEEEEEeccEEEEecCCccccccc
Q 037461 863 LKVAFHHATKDEVSVHTIRLPKQSTVGDVINDLKTKVE------LSQPDAELRLLEVFYHKIYKIFPLNEKIENI 931 (1077)
Q Consensus 863 ~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~------~~~~~~~lRl~ev~~~ki~~~~~~~~~i~~i 931 (1077)
+.|++-...- ..+.+-|..+.||.+|-+.++...+ .+-....+|| |+.||+ |..+.++.+.
T Consensus 17 m~I~vKtl~G---~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrL--Iy~GK~---LeD~~TL~~y 83 (116)
T 1wgh_A 17 INLRLILVSG---KTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRL--IYQGRF---LHGNVTLGAL 83 (116)
T ss_dssp EEEEEECSSS---CEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEE--EETTEE---ECSSCBTTTT
T ss_pred EEEEEEeCCC---CEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEE--EECCcC---CCCCCcHHHc
Confidence 4555543222 3568899999999999999998532 2212346888 688885 4667777654
No 206
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=23.14 E-value=2.5e+02 Score=26.50 Aligned_cols=48 Identities=13% Similarity=0.224 Sum_probs=34.2
Q ss_pred EEEcCCCCCHHHHHHHHhhcc-----ccCCCCccEEEEEEeccEEEEecCCccccccc
Q 037461 879 TIRLPKQSTVGDVINDLKTKV-----ELSQPDAELRLLEVFYHKIYKIFPLNEKIENI 931 (1077)
Q Consensus 879 ~~~v~k~~tv~dll~~l~~~~-----~~~~~~~~lRl~ev~~~ki~~~~~~~~~i~~i 931 (1077)
.+-++.+.||.+|-+.+.... +.+.+...+|| |+.||+ +..+.++++.
T Consensus 31 ~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrL--Iy~GK~---LeD~~TLsdy 83 (126)
T 1se9_A 31 PKAFPDATTVSALKETVISEWPREKENGPKTVKEVKL--ISAGKV---LENSKTVKDY 83 (126)
T ss_dssp EEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEE--EETTEE---CCTTSBGGGG
T ss_pred eeecCccCHHHHHHHHHHhhcccccccCCCChhhEEE--EECCeE---CcCCCcHHHc
Confidence 477889999999999995543 23332357888 788984 6677777643
No 207
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=21.50 E-value=20 Score=35.23 Aligned_cols=58 Identities=16% Similarity=0.249 Sum_probs=0.0
Q ss_pred EEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCCCEEEEEec
Q 037461 671 LFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICFQKS 737 (1077)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~GdIi~fQ~~ 737 (1077)
+-|..+.+|.+|-..|.+..|+|++..-.+|.- ..++...|+....|++|+.|-.-..
T Consensus 15 l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~G---------k~L~D~~tL~dygI~~gstL~Lvlr 72 (152)
T 3u5c_f 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAG---------KQLEDGRTLSDYNIQKESTLHLVLR 72 (152)
T ss_dssp -------------------------------------------------------------------
T ss_pred EEECCCCCHHHHHHHHHHHhCCCHHHEEEEECC---------EEccccCcHHHcCCCCCCEEEEEee
Confidence 357788999999999999999999888766642 2345567898889999998776544
No 208
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.08 E-value=78 Score=29.62 Aligned_cols=74 Identities=9% Similarity=-0.019 Sum_probs=57.2
Q ss_pred cEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCCCCcEEEEEEeecCCcccccccccccccccccCCCC
Q 037461 650 DILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDG 729 (1077)
Q Consensus 650 ~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~G 729 (1077)
.+.+-+|..-+ .+++ .+-+..+.+|.+|...+.+.++.|++..-.+|..- .++...|+.+.-+++|
T Consensus 15 ~itvkv~l~~~-~~k~----tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GK---------iLKD~eTL~~~gIk~g 80 (118)
T 2daf_A 15 LATVKVVLIPV-GQEI----VIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGK---------ILKNNETLVQHGVKPQ 80 (118)
T ss_dssp CEEEEEEETTT-CCEE----EEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTE---------EECSSCCHHHHSCCSS
T ss_pred cEEEEEEEcCC-CcEE----EEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCe---------EcCCcchHHHcCCCCC
Confidence 36666555443 3444 23488999999999999999999999998888742 3577889999999999
Q ss_pred CEEEEEec
Q 037461 730 DIICFQKS 737 (1077)
Q Consensus 730 dIi~fQ~~ 737 (1077)
.+|=..+.
T Consensus 81 ~TIhLvi~ 88 (118)
T 2daf_A 81 EIVQVEIF 88 (118)
T ss_dssp CEEEEEEE
T ss_pred CEEEEEEe
Confidence 99876655
No 209
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=20.67 E-value=77 Score=28.20 Aligned_cols=32 Identities=13% Similarity=0.155 Sum_probs=29.2
Q ss_pred EEEecCCCchhhHHHHHHhcCCCCCCcEEEEE
Q 037461 671 LFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYE 702 (1077)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lyE 702 (1077)
+.|+.+.+++.++..|++++++++++.|-+|=
T Consensus 24 flVp~~~tv~~~~~~lRkrL~l~~~~alFlyV 55 (91)
T 4gdk_A 24 WAVERTRTIQGLIDFIKKFLKLVASEQLFIYV 55 (91)
T ss_dssp EEEETTCBHHHHHHHHHHHTTCCSSSCCEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 45889999999999999999999999998884
No 210
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=20.45 E-value=60 Score=29.67 Aligned_cols=76 Identities=11% Similarity=0.060 Sum_probs=0.0
Q ss_pred CCCCCcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCCCC---------------CCcEEEEEEeecCCc
Q 037461 645 EKTKEDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAP---------------DEEIDLYEEIKFEPS 709 (1077)
Q Consensus 645 ~~~~~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~l~lyEEik~~p~ 709 (1077)
......+.|++|-.+-.+-. +.|..+.+|.+|-..|.+..|+|+ ++.-.+|.--
T Consensus 2 ~~~~~~M~I~Vk~l~g~~~~------v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk----- 70 (105)
T 1v2y_A 2 SSGSSGMTVRVCKMDGEVMP------VVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGE----- 70 (105)
T ss_dssp CCCCCSEEEEEECSSSCEEE------EEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSC-----
T ss_pred CCCCCcEEEEEEecCCCEEE------EEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCc-----
Q ss_pred ccccccccccccccccCCCCCEEEE
Q 037461 710 VMCEPIEKRCTFRASQLEDGDIICF 734 (1077)
Q Consensus 710 ~~ie~i~~~~tf~~~el~~GdIi~f 734 (1077)
...+...|+...-|++|+.|.|
T Consensus 71 ---~L~dD~~tL~dygI~~g~~l~l 92 (105)
T 1v2y_A 71 ---KLTEDRKKLRDYGIRNRDEVSF 92 (105)
T ss_dssp ---EECCSSSBHHHHTCCSSEEEEE
T ss_pred ---CccCCcCCHHHcCCCCCCEEEE
Done!