BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037463
(344 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZCV|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is
Replaced By Asn
Length = 353
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 82/187 (43%), Gaps = 18/187 (9%)
Query: 134 SKLRVWQLIEYDKIIFIDSDLLVLKNIDEFFFYPEFSAAGTNK--VLFNSGVMVIEPSLC 191
+KL W L +Y K +F+D+D LVL NID+ F E SAA FNSGV V +PS+
Sbjct: 105 TKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVE 164
Query: 192 KFEDLTLKSFKVSSYNGGDQGFLNEVFTWWHRLPKR--------INHLKVFSKQDDKEHQ 243
+ L + + S+NGGDQG LN F W R ++ + ++S +
Sbjct: 165 TYNQLLHVASEQGSFNGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFK-A 223
Query: 244 VGDGLYAIHYLG-LKPWMCYKDYDCNWDMVSRHKFASDSAHKK----WWQVYDAMPKKLQ 298
G +H+LG KPW YD V H + WW ++ L
Sbjct: 224 FGANAKVVHFLGQTKPW--NYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFTTSVVPLL 281
Query: 299 QYCALTK 305
Q L +
Sbjct: 282 QQFGLVQ 288
>pdb|3USQ|A Chain A, Structure Of D159sY194F GLYCOGENIN MUTANT TRUNCATED AT
RESIDUE 270
Length = 291
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 82/189 (43%), Gaps = 18/189 (9%)
Query: 132 NYSKLRVWQLIEYDKIIFIDSDLLVLKNIDEFFFYPEFSAAGTN--KVLFNSGVMVIEPS 189
+KL W L +Y K +F+D+D LVL NID+ F E SAA FNSGV V +PS
Sbjct: 103 TLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPS 162
Query: 190 LCKFEDLTLKSFKVSSYNGGDQGFLNEVFTWWHRLPKR--------INHLKVFSKQDDKE 241
+ + L + + S++GGDQG LN F W R ++ + +FS +
Sbjct: 163 VETYNQLLHVASEQGSFSGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIFSYLPAFK 222
Query: 242 HQVGDGLYAIHYLG-LKPWMCYKDYDCNWDMVSRHKFASDSAHKK----WWQVYDAMPKK 296
G +H+LG KPW YD V H + WW ++
Sbjct: 223 -AFGANAKVVHFLGQTKPW--NYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFTTSVVP 279
Query: 297 LQQYCALTK 305
L Q L +
Sbjct: 280 LLQQFGLVQ 288
>pdb|3USR|A Chain A, Structure Of Y194f Glycogenin Mutant Truncated At Residue
270
Length = 291
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 82/189 (43%), Gaps = 18/189 (9%)
Query: 132 NYSKLRVWQLIEYDKIIFIDSDLLVLKNIDEFFFYPEFSAAGTN--KVLFNSGVMVIEPS 189
+KL W L +Y K +F+D+D LVL NID+ F E SAA FNSGV V +PS
Sbjct: 103 TLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPS 162
Query: 190 LCKFEDLTLKSFKVSSYNGGDQGFLNEVFTWWHRLPKR--------INHLKVFSKQDDKE 241
+ + L + + S++GGDQG LN F W R ++ + +FS +
Sbjct: 163 VETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIFSYLPAFK 222
Query: 242 HQVGDGLYAIHYLG-LKPWMCYKDYDCNWDMVSRHKFASDSAHKK----WWQVYDAMPKK 296
G +H+LG KPW YD V H + WW ++
Sbjct: 223 -AFGANAKVVHFLGQTKPW--NYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFTTSVVP 279
Query: 297 LQQYCALTK 305
L Q L +
Sbjct: 280 LLQQFGLVQ 288
>pdb|3Q4S|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1), Apo Form
pdb|3QVB|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp
pdb|3U2W|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Glucose Or A Glucal Species
pdb|3U2W|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Glucose Or A Glucal Species
Length = 263
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 83/183 (45%), Gaps = 18/183 (9%)
Query: 132 NYSKLRVWQLIEYDKIIFIDSDLLVLKNIDEFFFYPEFSAAGTN--KVLFNSGVMVIEPS 189
+KL W L +Y K +F+D+D LVL NID+ F E SAA FNSGV V +PS
Sbjct: 84 TLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREELSAAPDPGWPDCFNSGVFVYQPS 143
Query: 190 LCKFEDLTLKSFKVSSYNGGDQGFLNEVFTWWHRLPKR--------INHLKVFSKQDDKE 241
+ + L + + S++GGDQG LN F+ W R ++ + +FS +
Sbjct: 144 VETYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISIFSYLPAFK 203
Query: 242 HQVGDGLYAIHYLG-LKPWMCYKDYDCNWDMVSRHKFASDSAHKK----WWQVYDAMPKK 296
G +H+LG +KPW YD V + H + WW ++
Sbjct: 204 -VFGASAKVVHFLGRVKPW--NYTYDPKTKSVKSEAHDPNMTHPEFLILWWNIFTTNVLP 260
Query: 297 LQQ 299
L Q
Sbjct: 261 LLQ 263
>pdb|1ZCY|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is
Replaced By Ser
pdb|1ZDG|A Chain A, Ser159 Mutant Of Glycogenin Complexed With Udp-Glucose And
Manganese
Length = 353
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 82/189 (43%), Gaps = 18/189 (9%)
Query: 132 NYSKLRVWQLIEYDKIIFIDSDLLVLKNIDEFFFYPEFSAAGTNK--VLFNSGVMVIEPS 189
+KL W L +Y K +F+D+D LVL NID+ F E SAA FNSGV V +PS
Sbjct: 103 TLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPS 162
Query: 190 LCKFEDLTLKSFKVSSYNGGDQGFLNEVFTWWHRLPKR--------INHLKVFSKQDDKE 241
+ + L + + S++GGDQG LN F W R ++ + ++S +
Sbjct: 163 VETYNQLLHVASEQGSFSGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFK 222
Query: 242 HQVGDGLYAIHYLG-LKPWMCYKDYDCNWDMVSRHKFASDSAHKK----WWQVYDAMPKK 296
G +H+LG KPW YD V H + WW ++
Sbjct: 223 -AFGANAKVVHFLGQTKPW--NYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFTTSVVP 279
Query: 297 LQQYCALTK 305
L Q L +
Sbjct: 280 LLQQFGLVQ 288
>pdb|1LL0|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|B Chain B, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|C Chain C, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|D Chain D, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|E Chain E, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|F Chain F, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|G Chain G, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|H Chain H, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|I Chain I, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|J Chain J, Crystal Structure Of Rabbit Muscle Glycogenin
Length = 339
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 82/187 (43%), Gaps = 18/187 (9%)
Query: 134 SKLRVWQLIEYDKIIFIDSDLLVLKNIDEFFFYPEFSAAGTN--KVLFNSGVMVIEPSLC 191
+KL W L +Y K +F+D+D LVL NID+ F E SAA FNSGV V +PS+
Sbjct: 91 TKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVE 150
Query: 192 KFEDLTLKSFKVSSYNGGDQGFLNEVFTWWHRLPKR--------INHLKVFSKQDDKEHQ 243
+ L + + S++GGDQG LN F W R ++ + ++S +
Sbjct: 151 TYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFK-A 209
Query: 244 VGDGLYAIHYLG-LKPWMCYKDYDCNWDMVSRHKFASDSAHKK----WWQVYDAMPKKLQ 298
G +H+LG KPW YD V H + WW ++ L
Sbjct: 210 FGANAKVVHFLGQTKPW--NYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFTTSVVPLL 267
Query: 299 QYCALTK 305
Q L +
Sbjct: 268 QQFGLVQ 274
>pdb|1LL2|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin Complexed
With Udp- Glucose And Manganese
pdb|1LL3|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin
Length = 333
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 82/187 (43%), Gaps = 18/187 (9%)
Query: 134 SKLRVWQLIEYDKIIFIDSDLLVLKNIDEFFFYPEFSAAGTN--KVLFNSGVMVIEPSLC 191
+KL W L +Y K +F+D+D LVL NID+ F E SAA FNSGV V +PS+
Sbjct: 85 TKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVE 144
Query: 192 KFEDLTLKSFKVSSYNGGDQGFLNEVFTWWHRLPKR--------INHLKVFSKQDDKEHQ 243
+ L + + S++GGDQG LN F W R ++ + ++S +
Sbjct: 145 TYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFK-A 203
Query: 244 VGDGLYAIHYLG-LKPWMCYKDYDCNWDMVSRHKFASDSAHKK----WWQVYDAMPKKLQ 298
G +H+LG KPW YD V H + WW ++ L
Sbjct: 204 FGANAKVVHFLGQTKPW--NYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFTTSVVPLL 261
Query: 299 QYCALTK 305
Q L +
Sbjct: 262 QQFGLVQ 268
>pdb|3V8Y|A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270
pdb|3V8Z|A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270
Complexed With Udp
Length = 291
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 82/189 (43%), Gaps = 18/189 (9%)
Query: 132 NYSKLRVWQLIEYDKIIFIDSDLLVLKNIDEFFFYPEFSAAGTN--KVLFNSGVMVIEPS 189
+KL W L +Y K +F+D+D LVL NID+ F E SAA FNSGV V +PS
Sbjct: 103 TLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPS 162
Query: 190 LCKFEDLTLKSFKVSSYNGGDQGFLNEVFTWWHRLPKR--------INHLKVFSKQDDKE 241
+ + L + + S++GGDQG LN F W R ++ + ++S +
Sbjct: 163 VETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFK 222
Query: 242 HQVGDGLYAIHYLG-LKPWMCYKDYDCNWDMVSRHKFASDSAHKK----WWQVYDAMPKK 296
G +H+LG KPW YD V H + WW ++
Sbjct: 223 -AFGANAKVVHFLGQTKPW--NYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFTTSVVP 279
Query: 297 LQQYCALTK 305
L Q L +
Sbjct: 280 LLQQFGLVQ 288
>pdb|3V90|A Chain A, Structure Of T82m Glycogenin Mutant Truncated At Residue
270
pdb|3V91|A Chain A, Structure Of T82m Glycogenin Mutant Truncated At Residue
270 Complexed With Udp-Glucose
Length = 291
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 82/187 (43%), Gaps = 18/187 (9%)
Query: 134 SKLRVWQLIEYDKIIFIDSDLLVLKNIDEFFFYPEFSAAGTN--KVLFNSGVMVIEPSLC 191
+KL W L +Y K +F+D+D LVL NID+ F E SAA FNSGV V +PS+
Sbjct: 105 TKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVE 164
Query: 192 KFEDLTLKSFKVSSYNGGDQGFLNEVFTWWHRLPKR--------INHLKVFSKQDDKEHQ 243
+ L + + S++GGDQG LN F W R ++ + ++S +
Sbjct: 165 TYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFK-A 223
Query: 244 VGDGLYAIHYLG-LKPWMCYKDYDCNWDMVSRHKFASDSAHKK----WWQVYDAMPKKLQ 298
G +H+LG KPW YD V H + WW ++ L
Sbjct: 224 FGANAKVVHFLGQTKPW--NYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFTTSVVPLL 281
Query: 299 QYCALTK 305
Q L +
Sbjct: 282 QQFGLVQ 288
>pdb|1ZCT|A Chain A, Structure Of Glycogenin Truncated At Residue 270 In A
Complex With Udp
pdb|1ZCT|B Chain B, Structure Of Glycogenin Truncated At Residue 270 In A
Complex With Udp
Length = 290
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 82/189 (43%), Gaps = 18/189 (9%)
Query: 132 NYSKLRVWQLIEYDKIIFIDSDLLVLKNIDEFFFYPEFSAAGTN--KVLFNSGVMVIEPS 189
+KL W L +Y K +F+D+D LVL NID+ F E SAA FNSGV V +PS
Sbjct: 103 TLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPS 162
Query: 190 LCKFEDLTLKSFKVSSYNGGDQGFLNEVFTWWHRLPKR--------INHLKVFSKQDDKE 241
+ + L + + S++GGDQG LN F W R ++ + ++S +
Sbjct: 163 VETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFK 222
Query: 242 HQVGDGLYAIHYLG-LKPWMCYKDYDCNWDMVSRHKFASDSAHKK----WWQVYDAMPKK 296
G +H+LG KPW YD V H + WW ++
Sbjct: 223 -AFGANAKVVHFLGQTKPW--NYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFTTSVVP 279
Query: 297 LQQYCALTK 305
L Q L +
Sbjct: 280 LLQQFGLVQ 288
>pdb|3T7M|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Triclinic Closed Form
pdb|3T7M|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Triclinic Closed Form
pdb|3T7N|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Monoclinic Closed Form
pdb|3T7N|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Monoclinic Closed Form
pdb|3T7O|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp-Glucose And Glucose
pdb|3T7O|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp-Glucose And Glucose
pdb|3U2U|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltotetraose
pdb|3U2U|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltotetraose
pdb|3U2X|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And 1'-Deoxyglucose
pdb|3U2X|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And 1'-Deoxyglucose
pdb|3U2V|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltohexaose
pdb|3U2V|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltohexaose
Length = 263
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 83/183 (45%), Gaps = 18/183 (9%)
Query: 132 NYSKLRVWQLIEYDKIIFIDSDLLVLKNIDEFFFYPEFSAAGTN--KVLFNSGVMVIEPS 189
+KL W L +Y K +F+D+D LVL NID+ F E SAA FNSGV V +PS
Sbjct: 84 TLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREELSAAPDPGWPDCFNSGVFVYQPS 143
Query: 190 LCKFEDLTLKSFKVSSYNGGDQGFLNEVFTWWHRLPKR--------INHLKVFSKQDDKE 241
+ + L + + S++GGDQG LN F+ W R ++ + ++S +
Sbjct: 144 VETYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISIYSYLPAFK 203
Query: 242 HQVGDGLYAIHYLG-LKPWMCYKDYDCNWDMVSRHKFASDSAHKK----WWQVYDAMPKK 296
G +H+LG +KPW YD V + H + WW ++
Sbjct: 204 -VFGASAKVVHFLGRVKPW--NYTYDPKTKSVKSEAHDPNMTHPEFLILWWNIFTTNVLP 260
Query: 297 LQQ 299
L Q
Sbjct: 261 LLQ 263
>pdb|3RMW|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant
Complexed With Manganese And Udp-Glucose
pdb|3RMV|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant
Complexed With Manganese And Udp
Length = 263
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 83/181 (45%), Gaps = 18/181 (9%)
Query: 134 SKLRVWQLIEYDKIIFIDSDLLVLKNIDEFFFYPEFSAAGTN--KVLFNSGVMVIEPSLC 191
+KL W L +Y K +F+D+D LVL NID+ F E SAA FNSGV V +PS+
Sbjct: 86 TKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREELSAAPDPGWPDCFNSGVFVYQPSVE 145
Query: 192 KFEDLTLKSFKVSSYNGGDQGFLNEVFTWWHRLPKR--------INHLKVFSKQDDKEHQ 243
+ L + + S++GGDQG LN F+ W R ++ + ++S +
Sbjct: 146 TYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISIYSYLPAFK-V 204
Query: 244 VGDGLYAIHYLG-LKPWMCYKDYDCNWDMVSRHKFASDSAHKK----WWQVYDAMPKKLQ 298
G +H+LG +KPW YD V + H + WW ++ L
Sbjct: 205 FGASAKVVHFLGRVKPW--NYTYDPKTKSVKSEAHDPNMTHPEFLILWWNIFTTNVLPLL 262
Query: 299 Q 299
Q
Sbjct: 263 Q 263
>pdb|3U2T|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese
Length = 284
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 83/181 (45%), Gaps = 18/181 (9%)
Query: 134 SKLRVWQLIEYDKIIFIDSDLLVLKNIDEFFFYPEFSAAGTN--KVLFNSGVMVIEPSLC 191
+KL W L +Y K +F+D+D LVL NID+ F E SAA FNSGV V +PS+
Sbjct: 107 TKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREELSAAPDPGWPDCFNSGVFVYQPSVE 166
Query: 192 KFEDLTLKSFKVSSYNGGDQGFLNEVFTWWHRLPKR--------INHLKVFSKQDDKEHQ 243
+ L + + S++GGDQG LN F+ W R ++ + ++S +
Sbjct: 167 TYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISIYSYLPAFK-V 225
Query: 244 VGDGLYAIHYLG-LKPWMCYKDYDCNWDMVSRHKFASDSAHKK----WWQVYDAMPKKLQ 298
G +H+LG +KPW YD V + H + WW ++ L
Sbjct: 226 FGASAKVVHFLGRVKPW--NYTYDPKTKSVKSEAHDPNMTHPEFLILWWNIFTTNVLPLL 283
Query: 299 Q 299
Q
Sbjct: 284 Q 284
>pdb|1ZCU|A Chain A, Apo Form Of The 162s Mutant Of Glycogenin
pdb|1ZDF|A Chain A, Ser162 Mutant Of Glycogenin Complexed With Udp-Glucose And
Manganese
Length = 353
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 81/189 (42%), Gaps = 18/189 (9%)
Query: 132 NYSKLRVWQLIEYDKIIFIDSDLLVLKNIDEFFFYPEFSAAGTNK--VLFNSGVMVIEPS 189
+KL W L +Y K +F+D+D LVL NID+ F E SAA FNSGV V +PS
Sbjct: 103 TLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPS 162
Query: 190 LCKFEDLTLKSFKVSSYNGGDQGFLNEVFTWWHRLPKR--------INHLKVFSKQDDKE 241
+ + L + + S++GG QG LN F W R ++ + ++S +
Sbjct: 163 VETYNQLLHVASEQGSFDGGSQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFK 222
Query: 242 HQVGDGLYAIHYLG-LKPWMCYKDYDCNWDMVSRHKFASDSAHKK----WWQVYDAMPKK 296
G +H+LG KPW YD V H + WW ++
Sbjct: 223 -AFGANAKVVHFLGQTKPW--NYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFTTSVVP 279
Query: 297 LQQYCALTK 305
L Q L +
Sbjct: 280 LLQQFGLVQ 288
>pdb|1KPI|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa2 Complexed With Sah And Dddmab
pdb|3HEM|A Chain A, Structure Of Mycobacterium Tuberculosis Mycolic Acid
Cyclopropane Synthase Cmaa2 In Complex With Dioctylamine
Length = 302
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 215 NEVFTWWHRLPKRINHLKVFSKQDD--KEHQVGDGLYAIHYLGLKPWMCYKDYDCNWDMV 272
NE F W P F + D +E Q A+ L L+P M D C W
Sbjct: 28 NEFFKLWLD-PSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGST 86
Query: 273 SRHKFA 278
RH A
Sbjct: 87 MRHAVA 92
>pdb|1R42|A Chain A, Native Human Angiotensin Converting Enzyme-related
Carboxypeptidase (ace2)
pdb|1R4L|A Chain A, Inhibitor Bound Human Angiotensin Converting
Enzyme-Related Carboxypeptidase (Ace2)
Length = 615
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 207 NGGDQGF---LNEVFTWWHRLPKRINHLKVFSK--QDDKEHQVGDGL-YAIHYLGLKPWM 260
NG ++GF + E+ + PK + + + S Q+D E ++ L A+ +G P+
Sbjct: 394 NGANEGFHEAVGEIMSLSAATPKHLKSIGLLSPDFQEDNETEINFLLKQALTIVGTLPF- 452
Query: 261 CYKDYDCNWDMVSRHKFASDSAHKKWWQV 289
Y W MV + + D KKWW++
Sbjct: 453 TYMLEKWRW-MVFKGEIPKDQWMKKWWEM 480
>pdb|3D0G|A Chain A, Crystal Structure Of Spike Protein Receptor-Binding Domain
From The 2002-2003 Sars Coronavirus Human Strain
Complexed With Human-Civet Chimeric Receptor Ace2
pdb|3D0G|B Chain B, Crystal Structure Of Spike Protein Receptor-Binding Domain
From The 2002-2003 Sars Coronavirus Human Strain
Complexed With Human-Civet Chimeric Receptor Ace2
pdb|3D0H|A Chain A, Crystal Structure Of Spike Protein Receptor-Binding Domain
From The 2002-2003 Sars Coronavirus Civet Strain
Complexed With Human-Civet Chimeric Receptor Ace2
pdb|3D0H|B Chain B, Crystal Structure Of Spike Protein Receptor-Binding Domain
From The 2002-2003 Sars Coronavirus Civet Strain
Complexed With Human-Civet Chimeric Receptor Ace2
pdb|3D0I|A Chain A, Crystal Structure Of Spike Protein Receptor-Binding Domain
From The 2005-2006 Sars Coronavirus Civet Strain
Complexed With Human-Civet Chimeric Receptor Ace2
pdb|3D0I|B Chain B, Crystal Structure Of Spike Protein Receptor-Binding Domain
From The 2005-2006 Sars Coronavirus Civet Strain
Complexed With Human-Civet Chimeric Receptor Ace2
Length = 597
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 207 NGGDQGF---LNEVFTWWHRLPKRINHLKVFSK--QDDKEHQVGDGL-YAIHYLGLKPWM 260
NG ++GF + E+ + PK + + + S Q+D E ++ L A+ +G P+
Sbjct: 376 NGANEGFHEAVGEIMSLSAATPKHLKSIGLLSPDFQEDNETEINFLLKQALTIVGTLPF- 434
Query: 261 CYKDYDCNWDMVSRHKFASDSAHKKWWQV 289
Y W MV + + D KKWW++
Sbjct: 435 TYMLEKWRW-MVFKGEIPKDQWMKKWWEM 462
>pdb|3SCK|A Chain A, Crystal Structure Of Spike Protein Receptor-Binding Domain
From A Predicted Sars Coronavirus Civet Strain Complexed
With Human-Civet Chimeric Receptor Ace2
pdb|3SCK|B Chain B, Crystal Structure Of Spike Protein Receptor-Binding Domain
From A Predicted Sars Coronavirus Civet Strain Complexed
With Human-Civet Chimeric Receptor Ace2
pdb|3SCL|A Chain A, Crystal Structure Of Spike Protein Receptor-Binding Domain
From Sars Coronavirus Epidemic Strain Complexed With
Human-Civet Chimeric Receptor Ace2
pdb|3SCL|B Chain B, Crystal Structure Of Spike Protein Receptor-Binding Domain
From Sars Coronavirus Epidemic Strain Complexed With
Human-Civet Chimeric Receptor Ace2
Length = 603
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 207 NGGDQGF---LNEVFTWWHRLPKRINHLKVFSK--QDDKEHQVGDGL-YAIHYLGLKPWM 260
NG ++GF + E+ + PK + + + S Q+D E ++ L A+ +G P+
Sbjct: 376 NGANEGFHEAVGEIMSLSAATPKHLKSIGLLSPDFQEDNETEINFLLKQALTIVGTLPF- 434
Query: 261 CYKDYDCNWDMVSRHKFASDSAHKKWWQV 289
Y W MV + + D KKWW++
Sbjct: 435 TYMLEKWRW-MVFKGEIPKDQWMKKWWEM 462
>pdb|2AJF|A Chain A, Structure Of Sars Coronavirus Spike Receptor-Binding
Domain Complexed With Its Receptor
pdb|2AJF|B Chain B, Structure Of Sars Coronavirus Spike Receptor-Binding
Domain Complexed With Its Receptor
pdb|3KBH|A Chain A, Crystal Structure Of Nl63 Respiratory Coronavirus
Receptor-Binding Domain Complexed With Its Human
Receptor
pdb|3KBH|B Chain B, Crystal Structure Of Nl63 Respiratory Coronavirus
Receptor-Binding Domain Complexed With Its Human
Receptor
pdb|3KBH|C Chain C, Crystal Structure Of Nl63 Respiratory Coronavirus
Receptor-Binding Domain Complexed With Its Human
Receptor
pdb|3KBH|D Chain D, Crystal Structure Of Nl63 Respiratory Coronavirus
Receptor-Binding Domain Complexed With Its Human
Receptor
Length = 597
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 207 NGGDQGF---LNEVFTWWHRLPKRINHLKVFSK--QDDKEHQVGDGL-YAIHYLGLKPWM 260
NG ++GF + E+ + PK + + + S Q+D E ++ L A+ +G P+
Sbjct: 376 NGANEGFHEAVGEIMSLSAATPKHLKSIGLLSPDFQEDNETEINFLLKQALTIVGTLPF- 434
Query: 261 CYKDYDCNWDMVSRHKFASDSAHKKWWQV 289
Y W MV + + D KKWW++
Sbjct: 435 TYMLEKWRW-MVFKGEIPKDQWMKKWWEM 462
>pdb|3SCI|A Chain A, Crystal Structure Of Spike Protein Receptor-Binding Domain
From A Predicted Sars Coronavirus Human Strain Complexed
With Human Receptor Ace2
pdb|3SCI|B Chain B, Crystal Structure Of Spike Protein Receptor-Binding Domain
From A Predicted Sars Coronavirus Human Strain Complexed
With Human Receptor Ace2
pdb|3SCJ|A Chain A, Crystal Structure Of Spike Protein Receptor-Binding Domain
From A Predicted Sars Coronavirus Civet Strain Complexed
With Human Receptor Ace2
pdb|3SCJ|B Chain B, Crystal Structure Of Spike Protein Receptor-Binding Domain
From A Predicted Sars Coronavirus Civet Strain Complexed
With Human Receptor Ace2
Length = 603
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 207 NGGDQGF---LNEVFTWWHRLPKRINHLKVFSK--QDDKEHQVGDGL-YAIHYLGLKPWM 260
NG ++GF + E+ + PK + + + S Q+D E ++ L A+ +G P+
Sbjct: 376 NGANEGFHEAVGEIMSLSAATPKHLKSIGLLSPDFQEDNETEINFLLKQALTIVGTLPF- 434
Query: 261 CYKDYDCNWDMVSRHKFASDSAHKKWWQV 289
Y W MV + + D KKWW++
Sbjct: 435 TYMLEKWRW-MVFKGEIPKDQWMKKWWEM 462
>pdb|1QQY|A Chain A, X-Ray Crystal Structure Analysis Of Canine Milk Lysozyme
(Apo-Type)
Length = 130
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 8/89 (8%)
Query: 231 LKVFSKQDDKEHQVGDGLYAIHYLGLKPWMCYKDYDCNWDMVSRHKFASDSA-------- 282
+K+FSK + G+ H L W+C +Y+ N++ + + S+ +
Sbjct: 1 MKIFSKCELARKLKSMGMDGFHGYSLANWVCMAEYESNFNTQAFNGRNSNGSSDYGIFQL 60
Query: 283 HKKWWQVYDAMPKKLQQYCALTKYMDKRI 311
+ KWW ++ +K++D I
Sbjct: 61 NSKWWCKSNSHSSANACNIMCSKFLDDNI 89
>pdb|3IAL|A Chain A, Giardia Lamblia Prolyl-Trna Synthetase In Complex With
Prolyl- Adenylate
pdb|3IAL|B Chain B, Giardia Lamblia Prolyl-Trna Synthetase In Complex With
Prolyl- Adenylate
Length = 518
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 281 SAHKKWWQVYDAMPKKLQQYCALTKYMDKRIKKWRRIAE 319
S KW + Y +P K+ Q C + ++ K K R+ E
Sbjct: 129 SMFSKWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVRE 167
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.471
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,899,138
Number of Sequences: 62578
Number of extensions: 529171
Number of successful extensions: 890
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 861
Number of HSP's gapped (non-prelim): 25
length of query: 344
length of database: 14,973,337
effective HSP length: 100
effective length of query: 244
effective length of database: 8,715,537
effective search space: 2126591028
effective search space used: 2126591028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)