BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037465
(432 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%)
Query: 135 ITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMN 194
I +P ++ L +LK L + + L + L L++LD+R C LR P G
Sbjct: 195 IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP 254
Query: 195 MRSLLNDNTRSLKYMPIGISKLTSLRTL 222
++ L+ + +L +P+ I +LT L L
Sbjct: 255 LKRLILKDCSNLLTLPLDIHRLTQLEKL 282
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 10/97 (10%)
Query: 135 ITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGK--- 191
+ E+P+ + L+ L L+ ++ LP ++ L L++L IR C L ELP +
Sbjct: 116 LXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDA 175
Query: 192 ------LMNMRSLLNDNTRSLKYMPIGISKLTSLRTL 222
L+N++SL + T ++ +P I+ L +L++L
Sbjct: 176 SGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSL 211
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 13/137 (9%)
Query: 135 ITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRN-LRELPAGIGKLM 193
+ + P+ +L HL++ + + LP+T + L+ L + RN LR LPA I L
Sbjct: 93 LPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTL--ARNPLRALPASIASLN 150
Query: 194 NMRSLLNDNTRSLKYMPIGISK---------LTSLRTLGKFVVGGGVDGSSTCRLESLKN 244
+R L L +P ++ L +L++L G +S L++LK+
Sbjct: 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKS 210
Query: 245 LQLLRECGIEGLGNVSH 261
L+ +R + LG H
Sbjct: 211 LK-IRNSPLSALGPAIH 226
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 161 LPETLCELYNLQKLDIRWCRNLRELPAGIGKL 192
LP + L L+KLD+R C NL LP+ I +L
Sbjct: 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 145 LIHLKYLNLSGLCIKR--LPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDN 202
L L+ L ++G + LP+ EL NL LD+ C+ + P L +++ +LN
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ-VLNMA 502
Query: 203 TRSLKYMPIGI-SKLTSLRTL 222
+ LK +P GI +LTSL+ +
Sbjct: 503 SNQLKSVPDGIFDRLTSLQKI 523
>pdb|1I8T|A Chain A, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
pdb|1I8T|B Chain B, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
Length = 367
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 152 NLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPI 211
NL I + E L + + +W R+ +ELPA I K + +R ++N S +Y I
Sbjct: 130 NLEEQAISLVGEDLYQALIKGYTEKQWGRSAKELPAFIIKRIPVRFTFDNNYFSDRYQGI 189
Query: 212 GISKLTSL 219
+ T L
Sbjct: 190 PVGGYTKL 197
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 135 ITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMN 194
I I N+ K L L L+G + LP + L NL+ LD+ R L LPA +G
Sbjct: 236 IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQ 294
Query: 195 MR 196
++
Sbjct: 295 LK 296
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 135 ITEIPENV-GKLIHLKYLNLSGLCIKRLPETLCE-LYNLQKLDIRWCRNLRELPAGIGKL 192
+T IP N+ + +L +L L I+ +P L + L NL+ ++ LR++P GI
Sbjct: 135 LTHIPANLLTDMRNLSHLELRA-NIEEMPSHLFDDLENLESIEF-GSNKLRQMPRGIFGK 192
Query: 193 MNMRSLLNDNTRSLKYMPIGI-SKLTSLRTL 222
M LN + LK +P GI +LTSL+ +
Sbjct: 193 MPKLKQLNLASNQLKSVPDGIFDRLTSLQKI 223
>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
Length = 169
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 147 HLKYLNLSGLCIKRLP--ETLCELYNLQKLDIRWCR--NLRELPAGIGKLMNMRSLLNDN 202
+LK+LNLSG IK L E L +L NL+ LD+ C NL + KL+ L+
Sbjct: 94 NLKHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNAYRENVFKLLPQVMYLDGY 153
Query: 203 TRSLKYMP 210
R K P
Sbjct: 154 DRDNKEAP 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.141 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,677,264
Number of Sequences: 62578
Number of extensions: 374931
Number of successful extensions: 732
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 716
Number of HSP's gapped (non-prelim): 29
length of query: 432
length of database: 14,973,337
effective HSP length: 102
effective length of query: 330
effective length of database: 8,590,381
effective search space: 2834825730
effective search space used: 2834825730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)