Query 037465
Match_columns 432
No_of_seqs 220 out of 2824
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 12:34:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037465.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037465hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 7.7E-28 1.7E-32 260.1 21.6 378 8-411 471-887 (1153)
2 KOG4658 Apoptotic ATPase [Sign 99.9 1.2E-27 2.6E-32 246.6 12.5 368 1-412 452-848 (889)
3 PLN00113 leucine-rich repeat r 99.9 5.5E-26 1.2E-30 244.9 17.9 271 60-368 68-343 (968)
4 PLN00113 leucine-rich repeat r 99.9 3.1E-25 6.8E-30 239.1 15.8 175 60-255 117-293 (968)
5 KOG0444 Cytoskeletal regulator 99.9 6.3E-25 1.4E-29 207.8 -5.3 309 62-410 56-379 (1255)
6 PLN03210 Resistant to P. syrin 99.9 4.5E-21 9.8E-26 207.8 18.7 147 61-228 589-736 (1153)
7 KOG4194 Membrane glycoprotein 99.8 5.4E-22 1.2E-26 186.7 3.1 310 60-411 77-409 (873)
8 KOG4194 Membrane glycoprotein 99.8 2.1E-22 4.5E-27 189.5 -0.2 200 61-285 125-328 (873)
9 KOG0444 Cytoskeletal regulator 99.8 1.9E-22 4.1E-27 191.2 -2.7 267 60-368 31-302 (1255)
10 KOG0472 Leucine-rich repeat pr 99.7 2.4E-20 5.3E-25 168.4 -6.6 271 62-378 46-317 (565)
11 KOG0472 Leucine-rich repeat pr 99.7 9.4E-20 2E-24 164.7 -6.1 242 60-346 67-308 (565)
12 KOG0618 Serine/threonine phosp 99.7 2E-19 4.3E-24 177.9 -4.5 200 171-406 243-489 (1081)
13 KOG0618 Serine/threonine phosp 99.7 2.6E-18 5.7E-23 170.1 -2.3 335 62-431 46-485 (1081)
14 KOG0617 Ras suppressor protein 99.6 1.8E-17 3.9E-22 133.3 -3.5 153 60-230 32-186 (264)
15 PRK15370 E3 ubiquitin-protein 99.6 9.1E-15 2E-19 149.5 12.2 244 60-368 177-426 (754)
16 PRK15387 E3 ubiquitin-protein 99.6 3.7E-14 8E-19 144.4 14.5 256 61-405 201-457 (788)
17 KOG0617 Ras suppressor protein 99.6 7.3E-17 1.6E-21 129.9 -4.5 154 79-255 28-182 (264)
18 cd00116 LRR_RI Leucine-rich re 99.5 4E-15 8.6E-20 140.4 1.6 149 76-228 15-176 (319)
19 cd00116 LRR_RI Leucine-rich re 99.5 6.5E-15 1.4E-19 138.9 1.1 288 89-404 3-318 (319)
20 PRK15370 E3 ubiquitin-protein 99.5 1.1E-13 2.3E-18 141.7 8.4 227 60-348 198-428 (754)
21 KOG4237 Extracellular matrix p 99.4 2.7E-14 5.9E-19 129.4 0.2 263 66-366 51-355 (498)
22 PRK15387 E3 ubiquitin-protein 99.4 1.2E-12 2.6E-17 133.4 12.1 234 60-368 221-456 (788)
23 KOG4658 Apoptotic ATPase [Sign 99.4 6E-13 1.3E-17 138.4 5.6 288 81-410 520-822 (889)
24 KOG4237 Extracellular matrix p 99.3 2.9E-13 6.2E-18 122.9 -1.5 256 59-347 65-358 (498)
25 KOG4341 F-box protein containi 99.1 1.4E-12 3.1E-17 119.3 -6.8 89 310-409 344-442 (483)
26 KOG0532 Leucine-rich repeat (L 99.1 7E-12 1.5E-16 119.0 -2.5 94 133-229 85-178 (722)
27 KOG1909 Ran GTPase-activating 99.1 1.1E-11 2.4E-16 111.1 -2.0 260 79-368 25-309 (382)
28 KOG4341 F-box protein containi 99.0 1.4E-11 3.1E-16 112.8 -3.6 288 61-376 138-445 (483)
29 KOG1909 Ran GTPase-activating 99.0 1.4E-10 3E-15 104.2 1.1 254 109-405 25-310 (382)
30 KOG3207 Beta-tubulin folding c 99.0 6.2E-11 1.4E-15 109.3 -1.3 193 76-286 113-313 (505)
31 PF14580 LRR_9: Leucine-rich r 98.9 1E-09 2.2E-14 92.3 5.2 131 81-230 16-153 (175)
32 PF14580 LRR_9: Leucine-rich r 98.9 6.3E-10 1.4E-14 93.5 3.5 101 62-180 20-124 (175)
33 KOG0532 Leucine-rich repeat (L 98.9 3.7E-11 7.9E-16 114.2 -5.1 148 64-231 101-248 (722)
34 KOG3207 Beta-tubulin folding c 98.8 5.2E-10 1.1E-14 103.3 0.1 208 59-285 119-337 (505)
35 COG4886 Leucine-rich repeat (L 98.8 6.7E-09 1.5E-13 100.9 6.4 154 110-285 112-266 (394)
36 COG4886 Leucine-rich repeat (L 98.8 7.1E-09 1.5E-13 100.8 5.2 192 65-286 97-289 (394)
37 KOG1259 Nischarin, modulator o 98.7 7.7E-09 1.7E-13 91.3 2.4 132 215-375 282-416 (490)
38 KOG2120 SCF ubiquitin ligase, 98.6 1.6E-09 3.5E-14 95.4 -3.1 83 148-230 187-273 (419)
39 PLN03150 hypothetical protein; 98.6 1.4E-07 3.1E-12 96.4 8.9 106 115-228 419-526 (623)
40 KOG1259 Nischarin, modulator o 98.6 1.3E-08 2.8E-13 89.9 0.8 207 161-407 206-413 (490)
41 PLN03150 hypothetical protein; 98.5 1.6E-07 3.4E-12 96.1 7.0 106 147-257 419-526 (623)
42 KOG2120 SCF ubiquitin ligase, 98.5 3.9E-09 8.4E-14 93.0 -4.3 205 60-284 158-373 (419)
43 PF13855 LRR_8: Leucine rich r 98.4 5E-07 1.1E-11 62.2 5.0 57 115-180 2-60 (61)
44 PF13855 LRR_8: Leucine rich r 98.4 4.8E-07 1E-11 62.3 4.5 59 84-157 1-60 (61)
45 KOG2982 Uncharacterized conser 98.3 3.8E-07 8.2E-12 80.7 2.2 231 81-365 42-287 (418)
46 KOG0531 Protein phosphatase 1, 98.2 1.3E-07 2.9E-12 92.2 -1.5 129 82-230 70-199 (414)
47 COG5238 RNA1 Ran GTPase-activa 98.2 8.1E-08 1.8E-12 83.8 -2.9 93 270-373 210-318 (388)
48 KOG0531 Protein phosphatase 1, 98.1 3.3E-07 7.1E-12 89.5 -1.7 192 61-285 72-266 (414)
49 PRK15386 type III secretion pr 98.1 1.5E-05 3.2E-10 75.5 8.8 61 145-210 51-111 (426)
50 PF12799 LRR_4: Leucine Rich r 98.0 6.2E-06 1.4E-10 52.2 3.8 38 115-161 2-39 (44)
51 PF12799 LRR_4: Leucine Rich r 98.0 8.7E-06 1.9E-10 51.5 3.5 40 146-186 1-40 (44)
52 KOG1859 Leucine-rich repeat pr 97.9 3.5E-07 7.6E-12 90.0 -5.1 20 77-96 102-121 (1096)
53 KOG3665 ZYG-1-like serine/thre 97.9 5.3E-06 1.1E-10 85.0 2.8 60 143-203 170-230 (699)
54 KOG4579 Leucine-rich repeat (L 97.9 6.1E-07 1.3E-11 70.4 -3.4 110 63-188 29-141 (177)
55 KOG1859 Leucine-rich repeat pr 97.8 6.9E-07 1.5E-11 88.0 -5.4 127 59-205 162-291 (1096)
56 KOG3665 ZYG-1-like serine/thre 97.8 1.4E-05 3.1E-10 81.9 3.6 150 60-225 121-283 (699)
57 PRK15386 type III secretion pr 97.7 4.8E-05 1E-09 72.2 5.5 83 80-188 48-133 (426)
58 KOG2982 Uncharacterized conser 97.7 1.7E-05 3.7E-10 70.5 2.2 104 65-180 49-157 (418)
59 KOG4579 Leucine-rich repeat (L 97.7 7.7E-06 1.7E-10 64.3 -0.7 106 84-203 27-133 (177)
60 COG5238 RNA1 Ran GTPase-activa 97.5 9.5E-05 2.1E-09 65.0 3.5 224 111-368 27-283 (388)
61 KOG1947 Leucine rich repeat pr 97.2 3.4E-05 7.4E-10 77.0 -3.0 42 359-410 403-444 (482)
62 KOG1947 Leucine rich repeat pr 97.1 6.7E-05 1.4E-09 74.9 -1.6 113 167-285 186-306 (482)
63 KOG2123 Uncharacterized conser 97.1 4.3E-05 9.3E-10 67.4 -2.7 79 61-157 19-99 (388)
64 KOG1644 U2-associated snRNP A' 97.1 0.00077 1.7E-08 56.9 4.4 107 113-230 41-153 (233)
65 KOG1644 U2-associated snRNP A' 97.0 0.00057 1.2E-08 57.7 3.3 82 146-230 42-126 (233)
66 KOG2123 Uncharacterized conser 97.0 4.4E-05 9.6E-10 67.3 -3.6 100 113-224 18-124 (388)
67 KOG2739 Leucine-rich acidic nu 96.2 0.0019 4.1E-08 56.8 1.1 84 110-204 39-127 (260)
68 KOG2739 Leucine-rich acidic nu 96.1 0.0015 3.2E-08 57.4 0.1 91 138-230 35-129 (260)
69 PF00560 LRR_1: Leucine Rich R 95.7 0.0066 1.4E-07 31.8 1.4 17 148-164 2-18 (22)
70 PF13306 LRR_5: Leucine rich r 95.5 0.064 1.4E-06 42.7 7.3 103 79-202 7-112 (129)
71 PF00560 LRR_1: Leucine Rich R 94.4 0.026 5.7E-07 29.5 1.5 21 115-144 1-21 (22)
72 PF13504 LRR_7: Leucine rich r 94.1 0.037 8.1E-07 26.9 1.5 13 148-160 3-15 (17)
73 PF13306 LRR_5: Leucine rich r 93.2 0.51 1.1E-05 37.4 7.7 114 60-195 11-128 (129)
74 KOG3864 Uncharacterized conser 93.0 0.034 7.3E-07 47.2 0.5 69 330-409 120-192 (221)
75 KOG3864 Uncharacterized conser 90.9 0.034 7.4E-07 47.2 -1.7 88 170-261 102-191 (221)
76 KOG0473 Leucine-rich repeat pr 90.2 0.008 1.7E-07 52.0 -6.2 86 80-181 38-123 (326)
77 smart00367 LRR_CC Leucine-rich 89.9 0.16 3.6E-06 27.7 1.0 18 392-409 1-18 (26)
78 smart00369 LRR_TYP Leucine-ric 89.5 0.31 6.7E-06 26.5 1.9 18 146-163 2-19 (26)
79 smart00370 LRR Leucine-rich re 89.5 0.31 6.7E-06 26.5 1.9 18 146-163 2-19 (26)
80 KOG4308 LRR-containing protein 87.4 0.0071 1.5E-07 59.6 -9.6 190 86-287 89-303 (478)
81 KOG0473 Leucine-rich repeat pr 86.6 0.026 5.6E-07 49.0 -5.4 90 107-206 35-124 (326)
82 KOG4308 LRR-containing protein 83.8 0.015 3.2E-07 57.4 -9.4 65 141-205 110-184 (478)
83 KOG3763 mRNA export factor TAP 75.2 1.4 3.1E-05 43.4 1.2 64 310-373 216-286 (585)
84 smart00364 LRR_BAC Leucine-ric 72.2 2.4 5.2E-05 23.1 1.1 17 147-163 3-19 (26)
85 smart00365 LRR_SD22 Leucine-ri 64.9 5.2 0.00011 21.8 1.5 15 146-160 2-16 (26)
86 PF13516 LRR_6: Leucine Rich r 64.9 2 4.3E-05 22.7 -0.1 9 171-179 4-12 (24)
87 PF14162 YozD: YozD-like prote 59.8 9.4 0.0002 24.4 2.2 19 2-20 11-29 (57)
88 smart00368 LRR_RI Leucine rich 43.1 18 0.00039 19.9 1.5 12 147-158 3-14 (28)
89 KOG3763 mRNA export factor TAP 35.3 26 0.00056 35.0 2.1 63 145-207 217-284 (585)
90 PF05725 FNIP: FNIP Repeat; I 22.3 1.5E+02 0.0032 18.2 3.3 7 336-342 13-19 (44)
91 COG3432 Predicted transcriptio 20.9 2.1E+02 0.0045 21.4 4.2 34 3-36 46-83 (95)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.96 E-value=7.7e-28 Score=260.15 Aligned_cols=378 Identities=22% Similarity=0.237 Sum_probs=248.8
Q ss_pred HHHHHHhCCCCccccCCeeecHHHHHHHHHhhccce--------EEeecCCCccceecccCCceEEEEeecCCCCC---C
Q 037465 8 YFNMLATRSFFQEIEKDCNMHDIVHDFAQFVCRKEC--------LWLEIDGNKESVINFFGGKVRHLGLNFEGGAP---L 76 (432)
Q Consensus 8 ~~~~L~~~~li~~~~~~~~mhdl~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~i~~L~l~~~~~~~---~ 76 (432)
-++.|++++||+.....+.|||++++||+++++++. .|...+.......+.+..+++.+.+....+.+ -
T Consensus 471 ~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~ 550 (1153)
T PLN03210 471 GLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIH 550 (1153)
T ss_pred ChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeec
Confidence 478999999999877679999999999999998753 22222111222334456778888877665544 2
Q ss_pred CccccccCcccEEEEecCCcCc-cCccCCcchhhhccC-CcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeC
Q 037465 77 PMSFFEFDRLRSLLIYDESLSN-LSLNGSILPELFSKL-ACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLS 154 (432)
Q Consensus 77 ~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~l-~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~ 154 (432)
+.+|..|++|+.|.+..+.... ...... ++..+..+ ++||.|++.+ +.++.+|..+ ...+|+.|+++
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~-lp~~~~~lp~~Lr~L~~~~---------~~l~~lP~~f-~~~~L~~L~L~ 619 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWH-LPEGFDYLPPKLRLLRWDK---------YPLRCMPSNF-RPENLVKLQMQ 619 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceee-cCcchhhcCcccEEEEecC---------CCCCCCCCcC-CccCCcEEECc
Confidence 4578899999999997663211 011222 23334444 4588888888 6778888766 46788888888
Q ss_pred CccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccccccceEecccccCC
Q 037465 155 GLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGS 234 (432)
Q Consensus 155 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~ 234 (432)
++.+..+|..+..+++|+.|+++++..+..+| .++.+++|+.|++++|.....+|..++.+++|+.|++.+|....
T Consensus 620 ~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~--- 695 (1153)
T PLN03210 620 GSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE--- 695 (1153)
T ss_pred CccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC---
Confidence 88888888778888888888888877677777 47778888888888887788888888888888888887765442
Q ss_pred CCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHH-------hhhhhhhHhhhh-
Q 037465 235 STCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEER-------RRKKEKDEQLLK- 306 (432)
Q Consensus 235 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-------~~~~~~~~~~~~- 306 (432)
..+.. .++++|+.|.+++|..+...+. ..++|+.|+++++.+..-+.... .........+..
T Consensus 696 --~Lp~~-i~l~sL~~L~Lsgc~~L~~~p~-------~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~ 765 (1153)
T PLN03210 696 --ILPTG-INLKSLYRLNLSGCSRLKSFPD-------ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWER 765 (1153)
T ss_pred --ccCCc-CCCCCCCEEeCCCCCCcccccc-------ccCCcCeeecCCCccccccccccccccccccccccchhhcccc
Confidence 12222 2567777888877765443221 12355555555554221110000 000000000000
Q ss_pred -------cCCCCCCCcEEEEeeeCC-CCCChhhhccCCCcEEEEeCCCCCCCCCCCCCcc-cceEeccccccccccCccc
Q 037465 307 -------ALQPPVNVEELWIVYYGG-NIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTLYNLKSVKRVGNEF 377 (432)
Q Consensus 307 -------~l~~~~~L~~L~l~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~l~-L~~L~l~~c~~l~~~~~~~ 377 (432)
....+++|+.|++++|.. ..+|.++.++++|+.|++++|..++.+|....++ |+.|++++|..++.+|...
T Consensus 766 ~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~ 845 (1153)
T PLN03210 766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDIS 845 (1153)
T ss_pred ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccc
Confidence 112246888899988754 4478888899999999999998888888655788 9999999998887765421
Q ss_pred cCC-------CCCCCCCCC--CCCCCcceEEEeCCcccccccc
Q 037465 378 LGI-------EESSEDDPS--SSSSSSSELSIEGCPLLENRYR 411 (432)
Q Consensus 378 ~~~-------~~~~~~~~~--~~~~~L~~L~i~~cp~L~~~~~ 411 (432)
... .....+ |. +.+++|+.|++++|++|+.+..
T Consensus 846 ~nL~~L~Ls~n~i~~i-P~si~~l~~L~~L~L~~C~~L~~l~~ 887 (1153)
T PLN03210 846 TNISDLNLSRTGIEEV-PWWIEKFSNLSFLDMNGCNNLQRVSL 887 (1153)
T ss_pred cccCEeECCCCCCccC-hHHHhcCCCCCEEECCCCCCcCccCc
Confidence 100 000001 21 4577888888888888887643
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.95 E-value=1.2e-27 Score=246.61 Aligned_cols=368 Identities=25% Similarity=0.221 Sum_probs=253.5
Q ss_pred ChhHHHHHHHHHHhCCCCccccC-----CeeecHHHHHHHHHhhc-----cceEEeecC-CCccceecccCCceEEEEee
Q 037465 1 MEMIGEEYFNMLATRSFFQEIEK-----DCNMHDIVHDFAQFVCR-----KECLWLEID-GNKESVINFFGGKVRHLGLN 69 (432)
Q Consensus 1 ~e~~~~~~~~~L~~~~li~~~~~-----~~~mhdl~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~i~~L~l~ 69 (432)
+|++|++|+.+||.++|++.... .|+|||++|+||.|+|. .+..+.... +.........+..+|++++.
T Consensus 452 ~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~ 531 (889)
T KOG4658|consen 452 AEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLM 531 (889)
T ss_pred hhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEe
Confidence 47899999999999999999873 29999999999999999 555444443 33333334457899999999
Q ss_pred cCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCcccc
Q 037465 70 FEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLK 149 (432)
Q Consensus 70 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~ 149 (432)
++.+..++.. .++++|++|.+.+|. .....+...+|..++.|++||+++| .....+|.++++|.+||
T Consensus 532 ~~~~~~~~~~-~~~~~L~tLll~~n~----~~l~~is~~ff~~m~~LrVLDLs~~--------~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 532 NNKIEHIAGS-SENPKLRTLLLQRNS----DWLLEISGEFFRSLPLLRVLDLSGN--------SSLSKLPSSIGELVHLR 598 (889)
T ss_pred ccchhhccCC-CCCCccceEEEeecc----hhhhhcCHHHHhhCcceEEEECCCC--------CccCcCChHHhhhhhhh
Confidence 9999887777 456689999999984 1134446677999999999999987 77899999999999999
Q ss_pred EEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCc--cccCCccCCcccccccccceEe
Q 037465 150 YLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRS--LKYMPIGISKLTSLRTLGKFVV 227 (432)
Q Consensus 150 ~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~--~~~~p~~l~~l~~L~~L~l~~~ 227 (432)
||+++++.+..+|..+++|++|.+|++..+..+..+|.....+++|++|.+..... ....-..+..+.+|+.+.....
T Consensus 599 yL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 599 YLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS 678 (889)
T ss_pred cccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecc
Confidence 99999999999999999999999999999987777777777799999999877641 1111122344445554444322
Q ss_pred cccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhc
Q 037465 228 GGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKA 307 (432)
Q Consensus 228 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (432)
.. .....+..+++|+.+...-+... .........+..+.+|+.|.+.++...+.... ....
T Consensus 679 s~-------~~~e~l~~~~~L~~~~~~l~~~~-~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~-----------~~~~ 739 (889)
T KOG4658|consen 679 SV-------LLLEDLLGMTRLRSLLQSLSIEG-CSKRTLISSLGSLGNLEELSILDCGISEIVIE-----------WEES 739 (889)
T ss_pred hh-------HhHhhhhhhHHHHHHhHhhhhcc-cccceeecccccccCcceEEEEcCCCchhhcc-----------cccc
Confidence 22 12334444555554222211000 12234566788899999999999983322110 0000
Q ss_pred CC---CCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCC-CCCCcc-cc----------eE-ecccccccc
Q 037465 308 LQ---PPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLP-PLGKLP-LE----------KL-TLYNLKSVK 371 (432)
Q Consensus 308 l~---~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~-~~~~l~-L~----------~L-~l~~c~~l~ 371 (432)
.. .++++..+...++.....+.|....|+|+.|.+.+|.....+. ....+. ++ .+ .+.+.+.++
T Consensus 740 ~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~ 819 (889)
T KOG4658|consen 740 LIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLP 819 (889)
T ss_pred cchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCc
Confidence 11 2446666777778887778888889999999999998777543 222222 33 22 222222222
Q ss_pred ccCccccCCCCCCCCCCCCCCCCcceEEEeCCccccccccC
Q 037465 372 RVGNEFLGIEESSEDDPSSSSSSSSELSIEGCPLLENRYRE 412 (432)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~cp~L~~~~~~ 412 (432)
.+-..- -.++.|+.+.+..||+++.....
T Consensus 820 ~i~~~~------------l~~~~l~~~~ve~~p~l~~~P~~ 848 (889)
T KOG4658|consen 820 QLYWLP------------LSFLKLEELIVEECPKLGKLPLL 848 (889)
T ss_pred eeEecc------------cCccchhheehhcCcccccCccc
Confidence 221110 13556888888888888866544
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=5.5e-26 Score=244.95 Aligned_cols=271 Identities=20% Similarity=0.236 Sum_probs=170.5
Q ss_pred CCceEEEEeecCCCCC-CCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465 60 GGKVRHLGLNFEGGAP-LPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI 138 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l 138 (432)
..+++.|+++++.+.. ++..+..+++|++|++++| .+.+.++...+..+++|++|++++| ...+.+
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n-----~~~~~ip~~~~~~l~~L~~L~Ls~n--------~l~~~~ 134 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNN-----QLSGPIPDDIFTTSSSLRYLNLSNN--------NFTGSI 134 (968)
T ss_pred CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCC-----ccCCcCChHHhccCCCCCEEECcCC--------cccccc
Confidence 4579999999888765 6778889999999999999 4555545565668899999999885 222334
Q ss_pred CccccCCccccEEEeCCcccc-ccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccc
Q 037465 139 PENVGKLIHLKYLNLSGLCIK-RLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLT 217 (432)
Q Consensus 139 p~~~~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~ 217 (432)
|. +.+++|++|++++|.+. .+|..++.+++|++|++++|.....+|..++.+++|++|++++|.....+|..++.++
T Consensus 135 p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 212 (968)
T PLN00113 135 PR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMK 212 (968)
T ss_pred Cc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcC
Confidence 42 44677777777777754 5666677777777777777765566677777777777777777766666676677777
Q ss_pred ccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhh
Q 037465 218 SLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRK 297 (432)
Q Consensus 218 ~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 297 (432)
+|++|++.++... ...+..++++++|+.|++.++... ...+..+..+++|+.|++++|.+
T Consensus 213 ~L~~L~L~~n~l~-----~~~p~~l~~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~L~~n~l----------- 272 (968)
T PLN00113 213 SLKWIYLGYNNLS-----GEIPYEIGGLTSLNHLDLVYNNLT----GPIPSSLGNLKNLQYLFLYQNKL----------- 272 (968)
T ss_pred CccEEECcCCccC-----CcCChhHhcCCCCCEEECcCceec----cccChhHhCCCCCCEEECcCCee-----------
Confidence 7777777666544 234455666667777766653221 12334455666666666666652
Q ss_pred hhhhHhhhhcCCCCCCCcEEEEeeeCCC-CCChhhhccCCCcEEEEeCCCCCCCCC-CCCCcc-cceEeccccc
Q 037465 298 KEKDEQLLKALQPPVNVEELWIVYYGGN-IFPKWLTSLTNLRNLYLSSCFNCEHLP-PLGKLP-LEKLTLYNLK 368 (432)
Q Consensus 298 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~l~-~~~~l~-L~~L~l~~c~ 368 (432)
.+..+..+..+++|++|++++|... .+|.++..+++|+.|++++|...+.+| .++.++ |+.|++++|.
T Consensus 273 ---~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 343 (968)
T PLN00113 273 ---SGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343 (968)
T ss_pred ---eccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCC
Confidence 2223334444555555555554433 235555555555555555554444333 244455 5555555554
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=3.1e-25 Score=239.09 Aligned_cols=175 Identities=20% Similarity=0.268 Sum_probs=103.7
Q ss_pred CCceEEEEeecCCCCC-CCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465 60 GGKVRHLGLNFEGGAP-LPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI 138 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l 138 (432)
..+++.|+++++.+.. +|. ..+++|++|++++|. +.+. ++..+..+++|++|++++| ...+.+
T Consensus 117 l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~-----~~~~-~p~~~~~l~~L~~L~L~~n--------~l~~~~ 180 (968)
T PLN00113 117 SSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNM-----LSGE-IPNDIGSFSSLKVLDLGGN--------VLVGKI 180 (968)
T ss_pred CCCCCEEECcCCccccccCc--cccCCCCEEECcCCc-----cccc-CChHHhcCCCCCEEECccC--------cccccC
Confidence 4567777777776654 332 346667777777763 3333 3444666677777777663 223455
Q ss_pred CccccCCccccEEEeCCcccc-ccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccc
Q 037465 139 PENVGKLIHLKYLNLSGLCIK-RLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLT 217 (432)
Q Consensus 139 p~~~~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~ 217 (432)
|..++++++|++|++++|.+. .+|..++.+++|++|++++|.....+|..++.+++|++|++++|...+.+|..++.++
T Consensus 181 p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 260 (968)
T PLN00113 181 PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLK 260 (968)
T ss_pred ChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCC
Confidence 666666666666666666643 4566666666666666666665556666666666666666666655555666666666
Q ss_pred ccccccceEecccccCCCCcCccccccCccCCceeeCC
Q 037465 218 SLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEG 255 (432)
Q Consensus 218 ~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 255 (432)
+|+.|++..+... ...+..+.++++|+.|++++
T Consensus 261 ~L~~L~L~~n~l~-----~~~p~~l~~l~~L~~L~Ls~ 293 (968)
T PLN00113 261 NLQYLFLYQNKLS-----GPIPPSIFSLQKLISLDLSD 293 (968)
T ss_pred CCCEEECcCCeee-----ccCchhHhhccCcCEEECcC
Confidence 6666666655443 22333444455555555544
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=6.3e-25 Score=207.85 Aligned_cols=309 Identities=25% Similarity=0.258 Sum_probs=222.0
Q ss_pred ceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCcc
Q 037465 62 KVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPEN 141 (432)
Q Consensus 62 ~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~ 141 (432)
++.+|++..+.+..+-..+..++.||++++..|.++ .+.+|..+-.+..|.+||||. +.+++.|..
T Consensus 56 kLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LK-----nsGiP~diF~l~dLt~lDLSh---------NqL~EvP~~ 121 (1255)
T KOG0444|consen 56 KLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLK-----NSGIPTDIFRLKDLTILDLSH---------NQLREVPTN 121 (1255)
T ss_pred hhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccc-----cCCCCchhcccccceeeecch---------hhhhhcchh
Confidence 455555555555555555566666666666666442 333555588899999999999 889999999
Q ss_pred ccCCccccEEEeCCccccccchh-hhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccc
Q 037465 142 VGKLIHLKYLNLSGLCIKRLPET-LCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLR 220 (432)
Q Consensus 142 ~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 220 (432)
+..-+++-.|+|++|+|+++|.. +.+++.|-+||+++|+ ++.+|+.+.++.+|+.|.+++|+..-.--.++..+++|+
T Consensus 122 LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~ 200 (1255)
T KOG0444|consen 122 LEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLS 200 (1255)
T ss_pred hhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhh
Confidence 98899999999999999999964 5688999999999988 999999999999999999999976544334556778888
Q ss_pred cccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhh
Q 037465 221 TLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEK 300 (432)
Q Consensus 221 ~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 300 (432)
+|.++++.... ...+..+..+.+|+.++++. ..++ ..+..+.++.+|+.|++++|.+..
T Consensus 201 vLhms~TqRTl----~N~Ptsld~l~NL~dvDlS~-N~Lp----~vPecly~l~~LrrLNLS~N~ite------------ 259 (1255)
T KOG0444|consen 201 VLHMSNTQRTL----DNIPTSLDDLHNLRDVDLSE-NNLP----IVPECLYKLRNLRRLNLSGNKITE------------ 259 (1255)
T ss_pred hhhcccccchh----hcCCCchhhhhhhhhccccc-cCCC----cchHHHhhhhhhheeccCcCceee------------
Confidence 88888776554 56788888888999988876 2222 245667888999999999987322
Q ss_pred hHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCC-CCC-CCCCcc-cceEeccccccccccCccc
Q 037465 301 DEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCE-HLP-PLGKLP-LEKLTLYNLKSVKRVGNEF 377 (432)
Q Consensus 301 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~l~-~~~~l~-L~~L~l~~c~~l~~~~~~~ 377 (432)
+--......+|++|+++.|..+.+|+.+..+++|+.|.+.+|...- .+| .+|++- |+.+...++. ++-+|..+
T Consensus 260 ---L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LElVPEgl 335 (1255)
T KOG0444|consen 260 ---LNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LELVPEGL 335 (1255)
T ss_pred ---eeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-cccCchhh
Confidence 1122233457888888888888888888888888888888875432 455 466666 6666665554 55555544
Q ss_pred cCCCCCCCCC---------CC--CCCCCcceEEEeCCccccccc
Q 037465 378 LGIEESSEDD---------PS--SSSSSSSELSIEGCPLLENRY 410 (432)
Q Consensus 378 ~~~~~~~~~~---------~~--~~~~~L~~L~i~~cp~L~~~~ 410 (432)
.....+..+. |. ..++.|+.|+++.+|+|-.-.
T Consensus 336 cRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 336 CRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 3332222221 22 358899999999999996553
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=4.5e-21 Score=207.78 Aligned_cols=147 Identities=27% Similarity=0.326 Sum_probs=83.5
Q ss_pred CceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCc
Q 037465 61 GKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE 140 (432)
Q Consensus 61 ~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~ 140 (432)
.+++.|.+.++.+..+|..| ...+|+.|++.++.+.. ++..+..+++|++|++++| ..++.+|
T Consensus 589 ~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~-------L~~~~~~l~~Lk~L~Ls~~--------~~l~~ip- 651 (1153)
T PLN03210 589 PKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEK-------LWDGVHSLTGLRNIDLRGS--------KNLKEIP- 651 (1153)
T ss_pred cccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccc-------cccccccCCCCCEEECCCC--------CCcCcCC-
Confidence 34566666665555555554 35566666666664321 2223455666666666664 3455555
Q ss_pred cccCCccccEEEeCCcc-ccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccccc
Q 037465 141 NVGKLIHLKYLNLSGLC-IKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSL 219 (432)
Q Consensus 141 ~~~~l~~L~~L~L~~~~-l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L 219 (432)
.+..+++|++|++++|. +..+|..++.+++|+.|++++|..+..+|..+ .+++|+.|++++|..+..+|.. .++|
T Consensus 652 ~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL 727 (1153)
T PLN03210 652 DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNI 727 (1153)
T ss_pred ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCc
Confidence 35556666666666655 55666666666666666666666566666544 5666666666666555444432 2344
Q ss_pred ccccceEec
Q 037465 220 RTLGKFVVG 228 (432)
Q Consensus 220 ~~L~l~~~~ 228 (432)
+.|++.++.
T Consensus 728 ~~L~L~~n~ 736 (1153)
T PLN03210 728 SWLDLDETA 736 (1153)
T ss_pred CeeecCCCc
Confidence 455544443
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=5.4e-22 Score=186.71 Aligned_cols=310 Identities=18% Similarity=0.205 Sum_probs=168.6
Q ss_pred CCceEEEEeecCCCCCC-CccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465 60 GGKVRHLGLNFEGGAPL-PMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI 138 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l 138 (432)
++..+.|+++++.+..+ +..|.++++|+.+.+.+|.+ +. +|.+.....+|+.|+|.+ |.+.++
T Consensus 77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~L-----t~--IP~f~~~sghl~~L~L~~---------N~I~sv 140 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNEL-----TR--IPRFGHESGHLEKLDLRH---------NLISSV 140 (873)
T ss_pred ccceeeeeccccccccCcHHHHhcCCcceeeeeccchh-----hh--cccccccccceeEEeeec---------cccccc
Confidence 55666677776666653 33456677777777776643 11 455444555577777766 555555
Q ss_pred -CccccCCccccEEEeCCccccccch-hhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcc
Q 037465 139 -PENVGKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKL 216 (432)
Q Consensus 139 -p~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l 216 (432)
.+++..++.||.|+|+.|.|..+|. ++..-.++++|+|++|.+..--...+..+.+|..|.++.|+...--+..+.++
T Consensus 141 ~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L 220 (873)
T KOG4194|consen 141 TSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRL 220 (873)
T ss_pred cHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhc
Confidence 3455666677777777777666653 45555667777777776333333445666677777777775544333556667
Q ss_pred cccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhh
Q 037465 217 TSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRR 296 (432)
Q Consensus 217 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 296 (432)
++|+.|++..+.+.. .....|..++.|+.+.+.+ .++.......+..+.++++|+++.|++
T Consensus 221 ~~L~~LdLnrN~iri-----ve~ltFqgL~Sl~nlklqr----N~I~kL~DG~Fy~l~kme~l~L~~N~l---------- 281 (873)
T KOG4194|consen 221 PKLESLDLNRNRIRI-----VEGLTFQGLPSLQNLKLQR----NDISKLDDGAFYGLEKMEHLNLETNRL---------- 281 (873)
T ss_pred chhhhhhccccceee-----ehhhhhcCchhhhhhhhhh----cCcccccCcceeeecccceeecccchh----------
Confidence 777777777776552 1233455566666665554 222222233455666666666666662
Q ss_pred hhhhhHhhhhcCCCCCCCcEEEEeeeCCCCC-ChhhhccCCCcEEEEeCCCCCCCCC--CCCCcc-cceEeccccccccc
Q 037465 297 KKEKDEQLLKALQPPVNVEELWIVYYGGNIF-PKWLTSLTNLRNLYLSSCFNCEHLP--PLGKLP-LEKLTLYNLKSVKR 372 (432)
Q Consensus 297 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~l~--~~~~l~-L~~L~l~~c~~l~~ 372 (432)
..---.++-.+..|+.|++++|...++ ++.-...++|+.|++++|+ ++.++ .+..+. |++|.++++. +.+
T Consensus 282 ----~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~-i~~l~~~sf~~L~~Le~LnLs~Ns-i~~ 355 (873)
T KOG4194|consen 282 ----QAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNR-ITRLDEGSFRVLSQLEELNLSHNS-IDH 355 (873)
T ss_pred ----hhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccc-cccCChhHHHHHHHhhhhcccccc-hHH
Confidence 222223444555566666665555443 2222345566666666653 23222 133344 5555555544 444
Q ss_pred cCcccc-CCCCCCCCC---------------CCCCCCCcceEEEeCCcccccccc
Q 037465 373 VGNEFL-GIEESSEDD---------------PSSSSSSSSELSIEGCPLLENRYR 411 (432)
Q Consensus 373 ~~~~~~-~~~~~~~~~---------------~~~~~~~L~~L~i~~cp~L~~~~~ 411 (432)
+....+ +...++.++ +-..+++|+.|.+.|+ +|+.+..
T Consensus 356 l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~k 409 (873)
T KOG4194|consen 356 LAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPK 409 (873)
T ss_pred HHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecch
Confidence 433211 111111111 1134777777777773 5555544
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=2.1e-22 Score=189.46 Aligned_cols=200 Identities=21% Similarity=0.164 Sum_probs=89.9
Q ss_pred CceEEEEeecCCCCCC-CccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-
Q 037465 61 GKVRHLGLNFEGGAPL-PMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI- 138 (432)
Q Consensus 61 ~~i~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l- 138 (432)
+++++|.+..+.+..+ .+.+..++.||+|+++.|.++. +....|..-.++++|+|++ |.++.+
T Consensus 125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~------i~~~sfp~~~ni~~L~La~---------N~It~l~ 189 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISE------IPKPSFPAKVNIKKLNLAS---------NRITTLE 189 (873)
T ss_pred cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhc------ccCCCCCCCCCceEEeecc---------ccccccc
Confidence 3444444444444432 1233344444444444443211 1122233444555555555 444444
Q ss_pred CccccCCccccEEEeCCccccccchh-hhccCCccEEecccccccccC-ChhhhcccccceEEcCCCCccccCCccCCcc
Q 037465 139 PENVGKLIHLKYLNLSGLCIKRLPET-LCELYNLQKLDIRWCRNLREL-PAGIGKLMNMRSLLNDNTRSLKYMPIGISKL 216 (432)
Q Consensus 139 p~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l 216 (432)
...|..+.+|-.|.|+.|+++.+|.. +..|++|+.|+|..|. ++.+ -..+.++++|+.|.+..|....--...+..|
T Consensus 190 ~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l 268 (873)
T KOG4194|consen 190 TGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGL 268 (873)
T ss_pred cccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhcCcccccCcceeee
Confidence 33445555555555555555555543 3335566666665555 3322 1223344444444444442222212223344
Q ss_pred cccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeecc
Q 037465 217 TSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGR 285 (432)
Q Consensus 217 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 285 (432)
.++++|++..+... ...-..+-.++.|+.|+++. ..+.......|..+++|++|+++.|.
T Consensus 269 ~kme~l~L~~N~l~-----~vn~g~lfgLt~L~~L~lS~----NaI~rih~d~WsftqkL~~LdLs~N~ 328 (873)
T KOG4194|consen 269 EKMEHLNLETNRLQ-----AVNEGWLFGLTSLEQLDLSY----NAIQRIHIDSWSFTQKLKELDLSSNR 328 (873)
T ss_pred cccceeecccchhh-----hhhcccccccchhhhhccch----hhhheeecchhhhcccceeEeccccc
Confidence 44444444444333 11223333455555555554 22222334455666666666666666
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.83 E-value=1.9e-22 Score=191.19 Aligned_cols=267 Identities=21% Similarity=0.205 Sum_probs=162.1
Q ss_pred CCceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccc--c
Q 037465 60 GGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLIT--E 137 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~--~ 137 (432)
.++++.|.++..+++.+|..++.+.+|+.|.+..|.+. . +-..++.++.||.+++..| +++ -
T Consensus 31 Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~-----~--vhGELs~Lp~LRsv~~R~N---------~LKnsG 94 (1255)
T KOG0444|consen 31 MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLI-----S--VHGELSDLPRLRSVIVRDN---------NLKNSG 94 (1255)
T ss_pred hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhH-----h--hhhhhccchhhHHHhhhcc---------ccccCC
Confidence 44566666777766667777777777777777666431 1 2223566666777776663 332 2
Q ss_pred cCccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhh-hcccccceEEcCCCCccccCCccCCcc
Q 037465 138 IPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGI-GKLMNMRSLLNDNTRSLKYMPIGISKL 216 (432)
Q Consensus 138 lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i-~~l~~L~~L~l~~~~~~~~~p~~l~~l 216 (432)
+|..+..|..|.+|+|++|.+...|..+..-+++-+|++++|. ++.+|..+ .+++.|-.|++++| .+..+|+++.++
T Consensus 95 iP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL 172 (1255)
T KOG0444|consen 95 IPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRL 172 (1255)
T ss_pred CCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHH
Confidence 5666666777777777777777777666666777777777666 66666553 35666666777766 456666666677
Q ss_pred cccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhh
Q 037465 217 TSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRR 296 (432)
Q Consensus 217 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 296 (432)
..|+.|.+++++.. ......+..++.|+.|.+++....- ...+..+..+.+|..++++.|+
T Consensus 173 ~~LqtL~Ls~NPL~-----hfQLrQLPsmtsL~vLhms~TqRTl---~N~Ptsld~l~NL~dvDlS~N~----------- 233 (1255)
T KOG0444|consen 173 SMLQTLKLSNNPLN-----HFQLRQLPSMTSLSVLHMSNTQRTL---DNIPTSLDDLHNLRDVDLSENN----------- 233 (1255)
T ss_pred hhhhhhhcCCChhh-----HHHHhcCccchhhhhhhcccccchh---hcCCCchhhhhhhhhccccccC-----------
Confidence 77777777666654 3344445555556666665533221 1234455566666666666665
Q ss_pred hhhhhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCC-CCCCcc-cceEeccccc
Q 037465 297 KKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLP-PLGKLP-LEKLTLYNLK 368 (432)
Q Consensus 297 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~-~~~~l~-L~~L~l~~c~ 368 (432)
...+++.+-.+++|..|+|++|..+.+......-.+|+.|+++.| .++.+| .+.+++ |+.|.+.++.
T Consensus 234 ----Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~Nk 302 (1255)
T KOG0444|consen 234 ----LPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNK 302 (1255)
T ss_pred ----CCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCc
Confidence 233444555566666666666666655544445566666666666 344444 355666 7777666554
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.74 E-value=2.4e-20 Score=168.42 Aligned_cols=271 Identities=23% Similarity=0.215 Sum_probs=184.5
Q ss_pred ceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCcc
Q 037465 62 KVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPEN 141 (432)
Q Consensus 62 ~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~ 141 (432)
....+.+..++++.+...+.++..|.+|++..|++ .. +|++++.+..+..|+++. +.+..+|+.
T Consensus 46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l-----~~--lp~aig~l~~l~~l~vs~---------n~ls~lp~~ 109 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKL-----SQ--LPAAIGELEALKSLNVSH---------NKLSELPEQ 109 (565)
T ss_pred chhhhhhccCchhhccHhhhcccceeEEEeccchh-----hh--CCHHHHHHHHHHHhhccc---------chHhhccHH
Confidence 35556667777766666777777777888777743 22 455577777777777777 667777777
Q ss_pred ccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccccccc
Q 037465 142 VGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRT 221 (432)
Q Consensus 142 ~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~ 221 (432)
++.+..|+.|+.+++.+..+|++++.+-.|+.++..+|. +..+|.+++.+.+|..+++.+| ....+|+..-.++.|++
T Consensus 110 i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ 187 (565)
T KOG0472|consen 110 IGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKH 187 (565)
T ss_pred HhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHh
Confidence 777777777777777777777777777777777777776 7777777777777777777777 44455554445777777
Q ss_pred ccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhh
Q 037465 222 LGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKD 301 (432)
Q Consensus 222 L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 301 (432)
++...+.... .++.++.+.+|..|++...+- .+.+++..|+.|.+|++..|. .
T Consensus 188 ld~~~N~L~t------lP~~lg~l~~L~~LyL~~Nki------~~lPef~gcs~L~Elh~g~N~---------------i 240 (565)
T KOG0472|consen 188 LDCNSNLLET------LPPELGGLESLELLYLRRNKI------RFLPEFPGCSLLKELHVGENQ---------------I 240 (565)
T ss_pred cccchhhhhc------CChhhcchhhhHHHHhhhccc------ccCCCCCccHHHHHHHhcccH---------------H
Confidence 7766655443 667777777777776665221 112366777777777777766 2
Q ss_pred Hhhh-hcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCCCCCCcccceEeccccccccccCcccc
Q 037465 302 EQLL-KALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLPLEKLTLYNLKSVKRVGNEFL 378 (432)
Q Consensus 302 ~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~l~L~~L~l~~c~~l~~~~~~~~ 378 (432)
..++ +....++++..|++.++...+.|+.+.-+.+|.+|++++|....-.+.+|++.|+.|-+.+++ ++.+..++.
T Consensus 241 ~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnlhL~~L~leGNP-lrTiRr~ii 317 (565)
T KOG0472|consen 241 EMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNLHLKFLALEGNP-LRTIRREII 317 (565)
T ss_pred HhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccceeeehhhcCCc-hHHHHHHHH
Confidence 2222 233467777777887777777777777777788888887744444445676667777777777 666655443
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.71 E-value=9.4e-20 Score=164.66 Aligned_cols=242 Identities=24% Similarity=0.282 Sum_probs=212.2
Q ss_pred CCceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC
Q 037465 60 GGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP 139 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp 139 (432)
...+..+.+..+....+|.++..+.++..++++.|+++. +|..+..+..|+.|+.++ +....+|
T Consensus 67 L~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~-------lp~~i~s~~~l~~l~~s~---------n~~~el~ 130 (565)
T KOG0472|consen 67 LACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSE-------LPEQIGSLISLVKLDCSS---------NELKELP 130 (565)
T ss_pred ccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhh-------ccHHHhhhhhhhhhhccc---------cceeecC
Confidence 445677888899999999999999999999999996432 666699999999999999 8899999
Q ss_pred ccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccccc
Q 037465 140 ENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSL 219 (432)
Q Consensus 140 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L 219 (432)
++++.+..|..++..+|++.++|+.++.+.+|..+++.+|. +..+|+...+|+.|++|+...| .++.+|+.++.+.+|
T Consensus 131 ~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L 208 (565)
T KOG0472|consen 131 DSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESL 208 (565)
T ss_pred chHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhh
Confidence 99999999999999999999999999999999999999998 8888888777999999999988 788999999999999
Q ss_pred ccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhh
Q 037465 220 RTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKE 299 (432)
Q Consensus 220 ~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 299 (432)
..|++..+... ..++|+.+..|..++++. ..+........+.++++..|++..|.
T Consensus 209 ~~LyL~~Nki~-------~lPef~gcs~L~Elh~g~----N~i~~lpae~~~~L~~l~vLDLRdNk-------------- 263 (565)
T KOG0472|consen 209 ELLYLRRNKIR-------FLPEFPGCSLLKELHVGE----NQIEMLPAEHLKHLNSLLVLDLRDNK-------------- 263 (565)
T ss_pred HHHHhhhcccc-------cCCCCCccHHHHHHHhcc----cHHHhhHHHHhcccccceeeeccccc--------------
Confidence 99999988876 455888888899988876 33433445566789999999999998
Q ss_pred hhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCC
Q 037465 300 KDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCF 346 (432)
Q Consensus 300 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~ 346 (432)
..+++..+..+.+|++|+++++..+.+|..++++ .|+.|.+.||+
T Consensus 264 -lke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 264 -LKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred -cccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence 4566667778899999999999999999999999 99999999996
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.71 E-value=2e-19 Score=177.90 Aligned_cols=200 Identities=27% Similarity=0.315 Sum_probs=111.9
Q ss_pred ccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCcCccccccCccCCc
Q 037465 171 LQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRE 250 (432)
Q Consensus 171 L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~ 250 (432)
|++++++.+. +..+|.+++.+.+|+.++..+|.. ..+|..+...++|+.|.+..+.... .++.+..++.|+.
T Consensus 243 l~~~dis~n~-l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~y------ip~~le~~~sL~t 314 (1081)
T KOG0618|consen 243 LQYLDISHNN-LSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELEY------IPPFLEGLKSLRT 314 (1081)
T ss_pred ceeeecchhh-hhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhhh------CCCcccccceeee
Confidence 4444444444 445677777888888888877743 5555555555556655555554432 3333333444444
Q ss_pred eeeCCCC--CC-------------------------------------------CCchhhhhcccccccCCceEEEeecc
Q 037465 251 CGIEGLG--NV-------------------------------------------SHLDEAERLQLYNQQNLLCLHLEFGR 285 (432)
Q Consensus 251 L~l~~~~--~~-------------------------------------------~~~~~~~~~~l~~~~~L~~L~l~~~~ 285 (432)
|++.... .. ....+.....+.++.+|+.|+|+.|+
T Consensus 315 LdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr 394 (1081)
T KOG0618|consen 315 LDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR 394 (1081)
T ss_pred eeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc
Confidence 4433211 00 01111222334444556666666554
Q ss_pred ccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCCCCCCcc-cceEec
Q 037465 286 VVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTL 364 (432)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~l~-L~~L~l 364 (432)
+ .......+.++..|+.|+++||....+|+.+..++.|+.|...+| .+...|++.++| |+.+|+
T Consensus 395 L--------------~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN-~l~~fPe~~~l~qL~~lDl 459 (1081)
T KOG0618|consen 395 L--------------NSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSN-QLLSFPELAQLPQLKVLDL 459 (1081)
T ss_pred c--------------ccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCC-ceeechhhhhcCcceEEec
Confidence 1 111222344555566666666666666666666666666655555 344566778888 999999
Q ss_pred cccccccccCccccCCCCCCCCCCCCCC-CCcceEEEeCCccc
Q 037465 365 YNLKSVKRVGNEFLGIEESSEDDPSSSS-SSSSELSIEGCPLL 406 (432)
Q Consensus 365 ~~c~~l~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~i~~cp~L 406 (432)
+.+. ++.+.. |...+ |+||.|+++|++.+
T Consensus 460 S~N~-L~~~~l------------~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 460 SCNN-LSEVTL------------PEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred ccch-hhhhhh------------hhhCCCcccceeeccCCccc
Confidence 7665 766643 22245 89999999999864
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.67 E-value=2.6e-18 Score=170.08 Aligned_cols=335 Identities=19% Similarity=0.182 Sum_probs=211.4
Q ss_pred ceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCcc
Q 037465 62 KVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPEN 141 (432)
Q Consensus 62 ~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~ 141 (432)
++++|+++++.+..+|..+..+.+|+.|.+++|.+.. .|....++.+|++|.|.+ +....+|.+
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~-------vp~s~~~~~~l~~lnL~~---------n~l~~lP~~ 109 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRS-------VPSSCSNMRNLQYLNLKN---------NRLQSLPAS 109 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchhhHhh-------Cchhhhhhhcchhheecc---------chhhcCchh
Confidence 4888888888888888888888889999988886533 455678888888888888 778888888
Q ss_pred ccCCccccEEEeCCccccccchhhhccC----------------------------------------CccE-Eeccccc
Q 037465 142 VGKLIHLKYLNLSGLCIKRLPETLCELY----------------------------------------NLQK-LDIRWCR 180 (432)
Q Consensus 142 ~~~l~~L~~L~L~~~~l~~lp~~i~~l~----------------------------------------~L~~-L~l~~~~ 180 (432)
+..+++|++|++++|.+..+|..+..+. +|++ |++++|.
T Consensus 110 ~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~ 189 (1081)
T KOG0618|consen 110 ISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNE 189 (1081)
T ss_pred HHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccch
Confidence 8888888888888887665554322221 2222 4555444
Q ss_pred ccc----------cC--------------C---------------hhhhcccccceEEcCCCCccccCCccCCccccccc
Q 037465 181 NLR----------EL--------------P---------------AGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRT 221 (432)
Q Consensus 181 ~~~----------~l--------------p---------------~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~ 221 (432)
... .+ | .....-.+|+.++++.+ ....+|.+++.+.+|+.
T Consensus 190 ~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n-~l~~lp~wi~~~~nle~ 268 (1081)
T KOG0618|consen 190 MEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHN-NLSNLPEWIGACANLEA 268 (1081)
T ss_pred hhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchh-hhhcchHHHHhcccceE
Confidence 220 00 0 00012235666666666 56678899999999999
Q ss_pred ccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhh
Q 037465 222 LGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKD 301 (432)
Q Consensus 222 L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 301 (432)
+.+..+.... .+..+...++|+.+.+..++- .-.+..+...++|++|++..|.+.+.++.-........
T Consensus 269 l~~n~N~l~~------lp~ri~~~~~L~~l~~~~nel-----~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l 337 (1081)
T KOG0618|consen 269 LNANHNRLVA------LPLRISRITSLVSLSAAYNEL-----EYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASL 337 (1081)
T ss_pred ecccchhHHh------hHHHHhhhhhHHHHHhhhhhh-----hhCCCcccccceeeeeeehhccccccchHHHhhhhHHH
Confidence 9998887754 667777788888887765321 11234566788999999999998877663322222111
Q ss_pred Hhhhhc---C--------CCCCCCcEEEEeeeCCCC-CChhhhccCCCcEEEEeCCCCCCCCCC--CCCcc-cceEeccc
Q 037465 302 EQLLKA---L--------QPPVNVEELWIVYYGGNI-FPKWLTSLTNLRNLYLSSCFNCEHLPP--LGKLP-LEKLTLYN 366 (432)
Q Consensus 302 ~~~~~~---l--------~~~~~L~~L~l~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~l~~--~~~l~-L~~L~l~~ 366 (432)
..+-.. + ...+.|+.|++.+|..+. .-+.+-++++||.|++++| .++.+|. +.+++ ||+|++++
T Consensus 338 ~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSG 416 (1081)
T KOG0618|consen 338 NTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSG 416 (1081)
T ss_pred HHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc-ccccCCHHHHhchHHhHHHhccc
Confidence 111100 1 112346666666655543 1223457888888888888 4555553 56778 88888888
Q ss_pred cccccccCccccCCCCCCCCC---------CC-CCCCCcceEEEeCCccccccccCCCCCCcccccCCCCccCCC
Q 037465 367 LKSVKRVGNEFLGIEESSEDD---------PS-SSSSSSSELSIEGCPLLENRYREGKGEDWHKISHIPHIQMSP 431 (432)
Q Consensus 367 c~~l~~~~~~~~~~~~~~~~~---------~~-~~~~~L~~L~i~~cp~L~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (432)
+. ++.+|........++.+- |+ ..++.|+.++++ |-.|+++..... ..| +.+.++.++|
T Consensus 417 Nk-L~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS-~N~L~~~~l~~~-~p~---p~LkyLdlSG 485 (1081)
T KOG0618|consen 417 NK-LTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLS-CNNLSEVTLPEA-LPS---PNLKYLDLSG 485 (1081)
T ss_pred ch-hhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecc-cchhhhhhhhhh-CCC---cccceeeccC
Confidence 77 777776443222111110 33 457888888886 456666544322 334 4444444444
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=1.8e-17 Score=133.32 Aligned_cols=153 Identities=25% Similarity=0.316 Sum_probs=97.7
Q ss_pred CCceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC
Q 037465 60 GGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP 139 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp 139 (432)
.++|+++.++.+.+..+|+.+.++.+|++|++++|.+ .. +|..+++++.||.|+++- +.+..+|
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqi-----e~--lp~~issl~klr~lnvgm---------nrl~~lp 95 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQI-----EE--LPTSISSLPKLRILNVGM---------NRLNILP 95 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchh-----hh--cChhhhhchhhhheecch---------hhhhcCc
Confidence 4566666666666666666666666666666666633 22 444466666666666665 5566666
Q ss_pred ccccCCccccEEEeCCcccc--ccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccc
Q 037465 140 ENVGKLIHLKYLNLSGLCIK--RLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLT 217 (432)
Q Consensus 140 ~~~~~l~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~ 217 (432)
..|+.++.|+.|++.+|++. .+|..+..+.-|+.|.+.+|. .+.+|.+++++++|+.|.+.+| .+-.+|..++.++
T Consensus 96 rgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdn-dll~lpkeig~lt 173 (264)
T KOG0617|consen 96 RGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDN-DLLSLPKEIGDLT 173 (264)
T ss_pred cccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccC-chhhCcHHHHHHH
Confidence 66666666666666666654 566666666666666666665 6666666666666666666666 3445666666666
Q ss_pred ccccccceEeccc
Q 037465 218 SLRTLGKFVVGGG 230 (432)
Q Consensus 218 ~L~~L~l~~~~~~ 230 (432)
.|++|.+.++...
T Consensus 174 ~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 174 RLRELHIQGNRLT 186 (264)
T ss_pred HHHHHhcccceee
Confidence 6666666665543
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.58 E-value=9.1e-15 Score=149.50 Aligned_cols=244 Identities=21% Similarity=0.251 Sum_probs=159.5
Q ss_pred CCceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC
Q 037465 60 GGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP 139 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp 139 (432)
..+...+.+.+.++..+|..+. ++|+.|++++|+++. +|..+ ..+|++|++++ +.++.+|
T Consensus 177 ~~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~Lts-------LP~~l--~~nL~~L~Ls~---------N~LtsLP 236 (754)
T PRK15370 177 KNNKTELRLKILGLTTIPACIP--EQITTLILDNNELKS-------LPENL--QGNIKTLYANS---------NQLTSIP 236 (754)
T ss_pred ccCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCc-------CChhh--ccCCCEEECCC---------CccccCC
Confidence 3456788888888888887663 579999999996532 33323 25899999998 6678888
Q ss_pred ccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccccc
Q 037465 140 ENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSL 219 (432)
Q Consensus 140 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L 219 (432)
..+. .+|+.|++++|.+..+|..+. .+|+.|++++|. +..+|..+. ++|+.|++++| .+..+|..+. ++|
T Consensus 237 ~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp--~sL 306 (754)
T PRK15370 237 ATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDN-SIRTLPAHLP--SGI 306 (754)
T ss_pred hhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCC-ccccCcccch--hhH
Confidence 7654 579999999999999987765 589999999887 667887654 58999999998 4456665443 478
Q ss_pred ccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhh
Q 037465 220 RTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKE 299 (432)
Q Consensus 220 ~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 299 (432)
+.|++.+|.... .+..+ .++|+.|.++++.- ..++ ..+ .++|+.|++++|.+.
T Consensus 307 ~~L~Ls~N~Lt~------LP~~l--~~sL~~L~Ls~N~L-t~LP----~~l--~~sL~~L~Ls~N~L~------------ 359 (754)
T PRK15370 307 THLNVQSNSLTA------LPETL--PPGLKTLEAGENAL-TSLP----ASL--PPELQVLDVSKNQIT------------ 359 (754)
T ss_pred HHHHhcCCcccc------CCccc--cccceeccccCCcc-ccCC----hhh--cCcccEEECCCCCCC------------
Confidence 888888776542 11111 14566666666432 2121 111 256777777777621
Q ss_pred hhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCCC-----CCCcc-cceEeccccc
Q 037465 300 KDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPP-----LGKLP-LEKLTLYNLK 368 (432)
Q Consensus 300 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~-----~~~l~-L~~L~l~~c~ 368 (432)
.++..+ ++.|++|++++|....+|..+. +.|+.|++++|.. ..+|. .+.+| +..|++.+++
T Consensus 360 ---~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L-~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 360 ---VLPETL--PPTITTLDVSRNALTNLPENLP--AALQIMQASRNNL-VRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred ---cCChhh--cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCc-ccCchhHHHHhhcCCCccEEEeeCCC
Confidence 111111 2467777777776666666543 3567777777643 34442 23346 6677776666
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.56 E-value=3.7e-14 Score=144.36 Aligned_cols=256 Identities=24% Similarity=0.256 Sum_probs=163.0
Q ss_pred CceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCc
Q 037465 61 GKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE 140 (432)
Q Consensus 61 ~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~ 140 (432)
..-..|+++.+.+..+|..+. ++|+.|.+.+|.++. +|. ..++|++|++++ |.++.+|.
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~-------LP~---lp~~Lk~LdLs~---------N~LtsLP~ 259 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS-------LPA---LPPELRTLEVSG---------NQLTSLPV 259 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCC-------CCC---CCCCCcEEEecC---------CccCcccC
Confidence 345567888888888888765 478899998885432 332 257889999988 67777774
Q ss_pred cccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccc
Q 037465 141 NVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLR 220 (432)
Q Consensus 141 ~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 220 (432)
. .++|+.|++++|.+..+|... .+|+.|++++|. +..+|. ..++|+.|++++|. +..+|... .+|+
T Consensus 260 l---p~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N~-Lt~LP~---~p~~L~~LdLS~N~-L~~Lp~lp---~~L~ 325 (788)
T PRK15387 260 L---PPGLLELSIFSNPLTHLPALP---SGLCKLWIFGNQ-LTSLPV---LPPGLQELSVSDNQ-LASLPALP---SELC 325 (788)
T ss_pred c---ccccceeeccCCchhhhhhch---hhcCEEECcCCc-cccccc---cccccceeECCCCc-cccCCCCc---cccc
Confidence 3 467888888888888777532 567888888887 667765 24678888888884 44455422 3466
Q ss_pred cccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhh
Q 037465 221 TLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEK 300 (432)
Q Consensus 221 ~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 300 (432)
.|++.+|.... ++.+. .+|+.|++++.. +...+. ..++|+.|++++|.+.
T Consensus 326 ~L~Ls~N~L~~-------LP~lp--~~Lq~LdLS~N~-Ls~LP~-------lp~~L~~L~Ls~N~L~------------- 375 (788)
T PRK15387 326 KLWAYNNQLTS-------LPTLP--SGLQELSVSDNQ-LASLPT-------LPSELYKLWAYNNRLT------------- 375 (788)
T ss_pred ccccccCcccc-------ccccc--cccceEecCCCc-cCCCCC-------CCcccceehhhccccc-------------
Confidence 67766655442 11111 357777776622 222111 1245677777777621
Q ss_pred hHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCCCCCCcc-cceEeccccccccccCccccC
Q 037465 301 DEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTLYNLKSVKRVGNEFLG 379 (432)
Q Consensus 301 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~l~-L~~L~l~~c~~l~~~~~~~~~ 379 (432)
.++. .+.+|+.|++++|....+|.. .++|+.|++++|. +..+|.+ .. |+.|++++|. ++.+|..+.
T Consensus 376 --~LP~---l~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~-LssIP~l--~~~L~~L~Ls~Nq-Lt~LP~sl~- 442 (788)
T PRK15387 376 --SLPA---LPSGLKELIVSGNRLTSLPVL---PSELKELMVSGNR-LTSLPML--PSGLLSLSVYRNQ-LTRLPESLI- 442 (788)
T ss_pred --cCcc---cccccceEEecCCcccCCCCc---ccCCCEEEccCCc-CCCCCcc--hhhhhhhhhccCc-ccccChHHh-
Confidence 1111 134677788877777666643 3577888888874 3445532 23 7777777766 777765433
Q ss_pred CCCCCCCCCCCCCCCcceEEEeCCcc
Q 037465 380 IEESSEDDPSSSSSSSSELSIEGCPL 405 (432)
Q Consensus 380 ~~~~~~~~~~~~~~~L~~L~i~~cp~ 405 (432)
.+++|+.|+++++|-
T Consensus 443 -----------~L~~L~~LdLs~N~L 457 (788)
T PRK15387 443 -----------HLSSETTVNLEGNPL 457 (788)
T ss_pred -----------hccCCCeEECCCCCC
Confidence 366777777777753
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=7.3e-17 Score=129.87 Aligned_cols=154 Identities=24% Similarity=0.349 Sum_probs=136.1
Q ss_pred cccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccc
Q 037465 79 SFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCI 158 (432)
Q Consensus 79 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l 158 (432)
.+.++++++.|.++.|++ +.. +|. +..+.+|++|++++ ++++++|.+++.++.|+.|+++-|++
T Consensus 28 gLf~~s~ITrLtLSHNKl-----~~v-ppn-ia~l~nlevln~~n---------nqie~lp~~issl~klr~lnvgmnrl 91 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKL-----TVV-PPN-IAELKNLEVLNLSN---------NQIEELPTSISSLPKLRILNVGMNRL 91 (264)
T ss_pred cccchhhhhhhhcccCce-----eec-CCc-HHHhhhhhhhhccc---------chhhhcChhhhhchhhhheecchhhh
Confidence 346788999999999954 332 444 88999999999999 89999999999999999999999999
Q ss_pred cccchhhhccCCccEEeccccccc-ccCChhhhcccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCc
Q 037465 159 KRLPETLCELYNLQKLDIRWCRNL-RELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTC 237 (432)
Q Consensus 159 ~~lp~~i~~l~~L~~L~l~~~~~~-~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~ 237 (432)
..+|..++.++.|+.||+.+|... ..+|..+..++.|+.|++++| ....+|..++++++|+.|.+.++....
T Consensus 92 ~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdndll~------ 164 (264)
T KOG0617|consen 92 NILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDNDLLS------ 164 (264)
T ss_pred hcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCchhh------
Confidence 999999999999999999988733 578999999999999999999 668899999999999999998887765
Q ss_pred CccccccCccCCceeeCC
Q 037465 238 RLESLKNLQLLRECGIEG 255 (432)
Q Consensus 238 ~~~~l~~l~~L~~L~l~~ 255 (432)
.+..++.+++|+.|.+.+
T Consensus 165 lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 165 LPKEIGDLTRLRELHIQG 182 (264)
T ss_pred CcHHHHHHHHHHHHhccc
Confidence 788889999999999887
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.50 E-value=4e-15 Score=140.37 Aligned_cols=149 Identities=17% Similarity=0.120 Sum_probs=74.1
Q ss_pred CCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCC
Q 037465 76 LPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSG 155 (432)
Q Consensus 76 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~ 155 (432)
....+..+..|+.|+++++.++.... . .++..+...+.|+.|+++++.... -......++..+..+++|++|++++
T Consensus 15 ~~~~~~~l~~L~~l~l~~~~l~~~~~-~-~i~~~l~~~~~l~~l~l~~~~~~~--~~~~~~~~~~~l~~~~~L~~L~l~~ 90 (319)
T cd00116 15 ATELLPKLLCLQVLRLEGNTLGEEAA-K-ALASALRPQPSLKELCLSLNETGR--IPRGLQSLLQGLTKGCGLQELDLSD 90 (319)
T ss_pred hHHHHHHHhhccEEeecCCCCcHHHH-H-HHHHHHhhCCCceEEeccccccCC--cchHHHHHHHHHHhcCceeEEEccC
Confidence 34445556667777777774422111 1 133445566667777777631100 0011122344455666777777777
Q ss_pred cccc-ccchhhhccCC---ccEEecccccccc----cCChhhhcc-cccceEEcCCCCccc----cCCccCCcccccccc
Q 037465 156 LCIK-RLPETLCELYN---LQKLDIRWCRNLR----ELPAGIGKL-MNMRSLLNDNTRSLK----YMPIGISKLTSLRTL 222 (432)
Q Consensus 156 ~~l~-~lp~~i~~l~~---L~~L~l~~~~~~~----~lp~~i~~l-~~L~~L~l~~~~~~~----~~p~~l~~l~~L~~L 222 (432)
|.+. ..+..+..+.+ |++|++++|.... .+...+..+ ++|+.|++++|.... .++..+..+++|++|
T Consensus 91 ~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L 170 (319)
T cd00116 91 NALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKEL 170 (319)
T ss_pred CCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEE
Confidence 7654 33344444444 7777777665321 122233444 666666666664332 122223344455555
Q ss_pred cceEec
Q 037465 223 GKFVVG 228 (432)
Q Consensus 223 ~l~~~~ 228 (432)
++.++.
T Consensus 171 ~l~~n~ 176 (319)
T cd00116 171 NLANNG 176 (319)
T ss_pred ECcCCC
Confidence 554443
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.48 E-value=6.5e-15 Score=138.88 Aligned_cols=288 Identities=20% Similarity=0.103 Sum_probs=169.3
Q ss_pred EEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccccc-------c
Q 037465 89 LLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKR-------L 161 (432)
Q Consensus 89 L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~-------l 161 (432)
|++.++. +.+......+..+.+|++|++++|.. ++ .....++..+...+.|++|+++++.+.. +
T Consensus 3 l~L~~~~-----l~~~~~~~~~~~l~~L~~l~l~~~~l-~~---~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~ 73 (319)
T cd00116 3 LSLKGEL-----LKTERATELLPKLLCLQVLRLEGNTL-GE---EAAKALASALRPQPSLKELCLSLNETGRIPRGLQSL 73 (319)
T ss_pred cccccCc-----ccccchHHHHHHHhhccEEeecCCCC-cH---HHHHHHHHHHhhCCCceEEeccccccCCcchHHHHH
Confidence 4555553 33332445567777788888888421 00 0113355566677778888888776542 3
Q ss_pred chhhhccCCccEEecccccccccCChhhhcccc---cceEEcCCCCccc----cCCccCCcc-cccccccceEecccccC
Q 037465 162 PETLCELYNLQKLDIRWCRNLRELPAGIGKLMN---MRSLLNDNTRSLK----YMPIGISKL-TSLRTLGKFVVGGGVDG 233 (432)
Q Consensus 162 p~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~---L~~L~l~~~~~~~----~~p~~l~~l-~~L~~L~l~~~~~~~~~ 233 (432)
+..+..+++|+.|++++|......+..+..+.. |++|++++|.... .+...+..+ ++|++|++.++.....
T Consensus 74 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~- 152 (319)
T cd00116 74 LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA- 152 (319)
T ss_pred HHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCch-
Confidence 345667778888888888754455555555555 8888888885542 222334455 7788888887765520
Q ss_pred CCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCC
Q 037465 234 SSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVN 313 (432)
Q Consensus 234 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (432)
........+..+++|+.|++.++.-...........+...++|++|++++|.+.+. ....+...+..+++
T Consensus 153 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~----------~~~~l~~~~~~~~~ 222 (319)
T cd00116 153 SCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDE----------GASALAETLASLKS 222 (319)
T ss_pred HHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChH----------HHHHHHHHhcccCC
Confidence 00112334556677888888774332221122334455567888888888873211 23445556677788
Q ss_pred CcEEEEeeeCCCC-CChhhh-----ccCCCcEEEEeCCCCCC----CC-CCCCCcc-cceEeccccccccccCccccCCC
Q 037465 314 VEELWIVYYGGNI-FPKWLT-----SLTNLRNLYLSSCFNCE----HL-PPLGKLP-LEKLTLYNLKSVKRVGNEFLGIE 381 (432)
Q Consensus 314 L~~L~l~~~~~~~-~~~~l~-----~l~~L~~L~l~~~~~~~----~l-~~~~~l~-L~~L~l~~c~~l~~~~~~~~~~~ 381 (432)
|++|++++|.... ....+. ..++|++|++++|.... .+ ..+..++ |+++++++|. +...+.......
T Consensus 223 L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~-l~~~~~~~~~~~ 301 (319)
T cd00116 223 LEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK-FGEEGAQLLAES 301 (319)
T ss_pred CCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC-CcHHHHHHHHHH
Confidence 8888888876543 111122 23788888888886541 11 1234557 8888888877 554433222111
Q ss_pred CCCCCCCCCCC-CCcceEEEeCCc
Q 037465 382 ESSEDDPSSSS-SSSSELSIEGCP 404 (432)
Q Consensus 382 ~~~~~~~~~~~-~~L~~L~i~~cp 404 (432)
. ..+ +.|++++|.+.|
T Consensus 302 ~-------~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 302 L-------LEPGNELESLWVKDDS 318 (319)
T ss_pred H-------hhcCCchhhcccCCCC
Confidence 0 134 678888877654
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.46 E-value=1.1e-13 Score=141.74 Aligned_cols=227 Identities=20% Similarity=0.207 Sum_probs=168.0
Q ss_pred CCceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC
Q 037465 60 GGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP 139 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp 139 (432)
++.++.|.+.++.+..+|..+. ++|++|++++|.++. +|..+ ..+|+.|++++ +.+..+|
T Consensus 198 p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lts-------LP~~l--~~~L~~L~Ls~---------N~L~~LP 257 (754)
T PRK15370 198 PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTS-------IPATL--PDTIQEMELSI---------NRITELP 257 (754)
T ss_pred ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCcccc-------CChhh--hccccEEECcC---------CccCcCC
Confidence 5679999999999999888764 589999999996532 33323 24799999999 6788888
Q ss_pred ccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccccc
Q 037465 140 ENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSL 219 (432)
Q Consensus 140 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L 219 (432)
..+. .+|++|++++|.+..+|..+. .+|++|++++|. +..+|..+. ++|+.|++++|. +..+|..+ .++|
T Consensus 258 ~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~l--~~sL 327 (754)
T PRK15370 258 ERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSNS-LTALPETL--PPGL 327 (754)
T ss_pred hhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCcccch--hhHHHHHhcCCc-cccCCccc--cccc
Confidence 7764 589999999999999987664 589999999997 777886553 479999999984 44566544 3689
Q ss_pred ccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhh
Q 037465 220 RTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKE 299 (432)
Q Consensus 220 ~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 299 (432)
+.|++.+|.... .+..+. ++|+.|+++++. +...+. .+ .++|+.|++++|.+..
T Consensus 328 ~~L~Ls~N~Lt~------LP~~l~--~sL~~L~Ls~N~-L~~LP~----~l--p~~L~~LdLs~N~Lt~----------- 381 (754)
T PRK15370 328 KTLEAGENALTS------LPASLP--PELQVLDVSKNQ-ITVLPE----TL--PPTITTLDVSRNALTN----------- 381 (754)
T ss_pred eeccccCCcccc------CChhhc--CcccEEECCCCC-CCcCCh----hh--cCCcCEEECCCCcCCC-----------
Confidence 999998876553 222232 578999998753 222222 12 2589999999998432
Q ss_pred hhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhh----ccCCCcEEEEeCCCCC
Q 037465 300 KDEQLLKALQPPVNVEELWIVYYGGNIFPKWLT----SLTNLRNLYLSSCFNC 348 (432)
Q Consensus 300 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~----~l~~L~~L~l~~~~~~ 348 (432)
++..+ ...|+.|++++|....+|..+. .++++..|++.+|...
T Consensus 382 ----LP~~l--~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 382 ----LPENL--PAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred ----CCHhH--HHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 22211 1368889999998888776654 4689999999999754
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.41 E-value=2.7e-14 Score=129.39 Aligned_cols=263 Identities=19% Similarity=0.164 Sum_probs=164.2
Q ss_pred EEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-CccccC
Q 037465 66 LGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-PENVGK 144 (432)
Q Consensus 66 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-p~~~~~ 144 (432)
+.-.+.++.++|..+. +.-..+.+..|.| ..+++.+|+.+++||.|||+. |.+..| |..|..
T Consensus 51 VdCr~~GL~eVP~~LP--~~tveirLdqN~I------~~iP~~aF~~l~~LRrLdLS~---------N~Is~I~p~AF~G 113 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLP--PETVEIRLDQNQI------SSIPPGAFKTLHRLRRLDLSK---------NNISFIAPDAFKG 113 (498)
T ss_pred EEccCCCcccCcccCC--CcceEEEeccCCc------ccCChhhccchhhhceecccc---------cchhhcChHhhhh
Confidence 3445566666666543 3456788888844 334677788888888888888 778887 778888
Q ss_pred CccccEEEeCC-ccccccch-hhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCc-cCCccccccc
Q 037465 145 LIHLKYLNLSG-LCIKRLPE-TLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPI-GISKLTSLRT 221 (432)
Q Consensus 145 l~~L~~L~L~~-~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~ 221 (432)
++.|..|-+.+ |+|+.+|. .+++|..|+.|.+.-|+......+.+..+++|..|.+.+| ....++. .+..+.+++.
T Consensus 114 L~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~t 192 (498)
T KOG4237|consen 114 LASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKT 192 (498)
T ss_pred hHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccch
Confidence 88887777766 66888885 6788888888888887744444555778888888888888 4455554 5667777777
Q ss_pred ccceEecccccCCCCcCcc-----------ccccCcc----------------------CCce--eeCCCCCCCCchhhh
Q 037465 222 LGKFVVGGGVDGSSTCRLE-----------SLKNLQL----------------------LREC--GIEGLGNVSHLDEAE 266 (432)
Q Consensus 222 L~l~~~~~~~~~~~~~~~~-----------~l~~l~~----------------------L~~L--~l~~~~~~~~~~~~~ 266 (432)
+.+..+.... .+..+ .++..+. ++.+ ....-..... ..-
T Consensus 193 lhlA~np~ic----dCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~--~cP 266 (498)
T KOG4237|consen 193 LHLAQNPFIC----DCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDS--ICP 266 (498)
T ss_pred HhhhcCcccc----ccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCC--cCh
Confidence 7776665322 11111 1111110 0000 0000000000 011
Q ss_pred hcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCCChh-hhccCCCcEEEEeCC
Q 037465 267 RLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKW-LTSLTNLRNLYLSSC 345 (432)
Q Consensus 267 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~ 345 (432)
...++.+++|+.|++++|. ....-..++.....++.|.|..|....+... +.++..|+.|++.+|
T Consensus 267 ~~cf~~L~~L~~lnlsnN~--------------i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N 332 (498)
T KOG4237|consen 267 AKCFKKLPNLRKLNLSNNK--------------ITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDN 332 (498)
T ss_pred HHHHhhcccceEeccCCCc--------------cchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCC
Confidence 2236777888888888887 3344445666677777777777766554333 337778888888888
Q ss_pred CCCCCCC-CCCCcc-cceEeccc
Q 037465 346 FNCEHLP-PLGKLP-LEKLTLYN 366 (432)
Q Consensus 346 ~~~~~l~-~~~~l~-L~~L~l~~ 366 (432)
+.....| .+..+. |.+|.+-.
T Consensus 333 ~it~~~~~aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 333 QITTVAPGAFQTLFSLSTLNLLS 355 (498)
T ss_pred eeEEEecccccccceeeeeehcc
Confidence 6555444 355555 66666653
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.41 E-value=1.2e-12 Score=133.39 Aligned_cols=234 Identities=21% Similarity=0.126 Sum_probs=161.5
Q ss_pred CCceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC
Q 037465 60 GGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP 139 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp 139 (432)
..+++.|.+..+.+..+|.. .++|++|++++|.++. +|. ..++|+.|++++ +.+..+|
T Consensus 221 ~~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lts-------LP~---lp~sL~~L~Ls~---------N~L~~Lp 278 (788)
T PRK15387 221 PAHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTS-------LPV---LPPGLLELSIFS---------NPLTHLP 278 (788)
T ss_pred hcCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCc-------ccC---cccccceeeccC---------Cchhhhh
Confidence 45789999999999988753 5789999999996532 332 246889999999 6677777
Q ss_pred ccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccccc
Q 037465 140 ENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSL 219 (432)
Q Consensus 140 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L 219 (432)
.. ..+|+.|++++|.++.+|.. .++|+.|++++|. +..+|.. ..+|+.|++++|. +..+|.. ..+|
T Consensus 279 ~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l---p~~L~~L~Ls~N~-L~~LP~l---p~~L 344 (788)
T PRK15387 279 AL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNNQ-LTSLPTL---PSGL 344 (788)
T ss_pred hc---hhhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCC---cccccccccccCc-ccccccc---cccc
Confidence 53 35788999999999988853 4789999999987 6667642 2357788888884 4456642 2478
Q ss_pred ccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhh
Q 037465 220 RTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKE 299 (432)
Q Consensus 220 ~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 299 (432)
+.|++++|.... .+.. ..+|+.|+++... +..++ . ...+|+.|++++|.+.
T Consensus 345 q~LdLS~N~Ls~------LP~l---p~~L~~L~Ls~N~-L~~LP----~---l~~~L~~LdLs~N~Lt------------ 395 (788)
T PRK15387 345 QELSVSDNQLAS------LPTL---PSELYKLWAYNNR-LTSLP----A---LPSGLKELIVSGNRLT------------ 395 (788)
T ss_pred ceEecCCCccCC------CCCC---Ccccceehhhccc-cccCc----c---cccccceEEecCCccc------------
Confidence 889888876653 1111 1345555554421 12211 1 1246888999888731
Q ss_pred hhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCC-CCCCcc-cceEeccccc
Q 037465 300 KDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLP-PLGKLP-LEKLTLYNLK 368 (432)
Q Consensus 300 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~-~~~~l~-L~~L~l~~c~ 368 (432)
.++. .+++|+.|++++|....+|.. +.+|+.|++++|.. +.+| .+.+++ |+.|++++|+
T Consensus 396 ---~LP~---l~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqL-t~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 396 ---SLPV---LPSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQL-TRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred ---CCCC---cccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCcc-cccChHHhhccCCCeEECCCCC
Confidence 1111 235788899988888777753 35678888888854 4566 467788 9999998887
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.35 E-value=6e-13 Score=138.38 Aligned_cols=288 Identities=24% Similarity=0.274 Sum_probs=194.7
Q ss_pred cccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCcc-ccCCccccEEEeCCcc-c
Q 037465 81 FEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPEN-VGKLIHLKYLNLSGLC-I 158 (432)
Q Consensus 81 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~-~~~l~~L~~L~L~~~~-l 158 (432)
.+....|...+.++.+.. .+. -..++.|++|-+..+. ..+..++.. |..++.|++|++++|. +
T Consensus 520 ~~~~~~rr~s~~~~~~~~-------~~~-~~~~~~L~tLll~~n~-------~~l~~is~~ff~~m~~LrVLDLs~~~~l 584 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIEH-------IAG-SSENPKLRTLLLQRNS-------DWLLEISGEFFRSLPLLRVLDLSGNSSL 584 (889)
T ss_pred cchhheeEEEEeccchhh-------ccC-CCCCCccceEEEeecc-------hhhhhcCHHHHhhCcceEEEECCCCCcc
Confidence 455678888888885311 222 3456689999988831 025666544 6779999999999988 8
Q ss_pred cccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCcC
Q 037465 159 KRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCR 238 (432)
Q Consensus 159 ~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 238 (432)
..+|.+|+.|.+||+|+++++. +..+|..++++..|.+|++..+.....+|.....+++|++|.+....... ....
T Consensus 585 ~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~---~~~~ 660 (889)
T KOG4658|consen 585 SKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSN---DKLL 660 (889)
T ss_pred CcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccccc---chhh
Confidence 8999999999999999999998 88999999999999999999998777777767779999999988775221 2445
Q ss_pred ccccccCccCCceeeCCCCCCCCchhhhhcccccccCCc----eEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCC
Q 037465 239 LESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLL----CLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNV 314 (432)
Q Consensus 239 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L 314 (432)
...+.++.+|+.+.+..... .....+..+..|. .+.+.++ ........+..+.+|
T Consensus 661 l~el~~Le~L~~ls~~~~s~------~~~e~l~~~~~L~~~~~~l~~~~~---------------~~~~~~~~~~~l~~L 719 (889)
T KOG4658|consen 661 LKELENLEHLENLSITISSV------LLLEDLLGMTRLRSLLQSLSIEGC---------------SKRTLISSLGSLGNL 719 (889)
T ss_pred HHhhhcccchhhheeecchh------HhHhhhhhhHHHHHHhHhhhhccc---------------ccceeecccccccCc
Confidence 66667777777777644222 0111112222222 2222222 234455677888999
Q ss_pred cEEEEeeeCCCCCC-hhhh-----c-cCCCcEEEEeCCCCCCCCCCCCCcc-cceEeccccccccccCccccCCCCCCCC
Q 037465 315 EELWIVYYGGNIFP-KWLT-----S-LTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTLYNLKSVKRVGNEFLGIEESSED 386 (432)
Q Consensus 315 ~~L~l~~~~~~~~~-~~l~-----~-l~~L~~L~l~~~~~~~~l~~~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 386 (432)
+.|.+.+|...... .|.. . ++++..+.+.+|.....+.+..-.| |++|++..|..++++............
T Consensus 720 ~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~- 798 (889)
T KOG4658|consen 720 EELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKE- 798 (889)
T ss_pred ceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhccc-
Confidence 99999998886422 2211 2 6778888888887777776544456 999999999988888654332211100
Q ss_pred CCCCCCCCcceE-EEeCCccccccc
Q 037465 387 DPSSSSSSSSEL-SIEGCPLLENRY 410 (432)
Q Consensus 387 ~~~~~~~~L~~L-~i~~cp~L~~~~ 410 (432)
-...|++++.+ .+.+-+.+++++
T Consensus 799 -~i~~f~~~~~l~~~~~l~~l~~i~ 822 (889)
T KOG4658|consen 799 -LILPFNKLEGLRMLCSLGGLPQLY 822 (889)
T ss_pred -EEecccccccceeeecCCCCceeE
Confidence 00135555555 355555555553
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.28 E-value=2.9e-13 Score=122.87 Aligned_cols=256 Identities=20% Similarity=0.208 Sum_probs=179.6
Q ss_pred cCCceEEEEeecCCCCCCCc-cccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccc
Q 037465 59 FGGKVRHLGLNFEGGAPLPM-SFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITE 137 (432)
Q Consensus 59 ~~~~i~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~ 137 (432)
.+.....+.+..+++..+|. +|+.+++||.|+++.|.| +. +-|+.|.+++.|..|-+.++ +.+++
T Consensus 65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~I-----s~-I~p~AF~GL~~l~~Lvlyg~--------NkI~~ 130 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNI-----SF-IAPDAFKGLASLLSLVLYGN--------NKITD 130 (498)
T ss_pred CCCcceEEEeccCCcccCChhhccchhhhceecccccch-----hh-cChHhhhhhHhhhHHHhhcC--------Cchhh
Confidence 36678889999999999876 789999999999999954 33 35667999999988877775 78999
Q ss_pred cCc-cccCCccccEEEeCCccccccc-hhhhccCCccEEecccccccccCCh-hhhcccccceEEcCCCCccc-------
Q 037465 138 IPE-NVGKLIHLKYLNLSGLCIKRLP-ETLCELYNLQKLDIRWCRNLRELPA-GIGKLMNMRSLLNDNTRSLK------- 207 (432)
Q Consensus 138 lp~-~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~------- 207 (432)
+|. .|++|..|+.|.+.-|.+..++ ..+..+++|..|.+.+|. +..++. .+..+..++.+.+..++...
T Consensus 131 l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wl 209 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWL 209 (498)
T ss_pred hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchh
Confidence 976 5788999999999999888665 478899999999999988 777766 56678888888777665211
Q ss_pred -----cCCccCCcccccccccceEecccc---------------------cCCCCcCccccccCccCCceeeCCCCCCCC
Q 037465 208 -----YMPIGISKLTSLRTLGKFVVGGGV---------------------DGSSTCRLESLKNLQLLRECGIEGLGNVSH 261 (432)
Q Consensus 208 -----~~p~~l~~l~~L~~L~l~~~~~~~---------------------~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 261 (432)
..|..++...-..-..+.+..... .....+....+.++++|+.+++++ ..
T Consensus 210 a~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn----N~ 285 (498)
T KOG4237|consen 210 ADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN----NK 285 (498)
T ss_pred hhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC----Cc
Confidence 111111111100000000000000 001122334478899999999988 33
Q ss_pred chhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCC-ChhhhccCCCcEE
Q 037465 262 LDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIF-PKWLTSLTNLRNL 340 (432)
Q Consensus 262 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L 340 (432)
+.......+....++++|.+..|. ...--...+..+..|+.|+|++|..+.+ |..+..+..|..|
T Consensus 286 i~~i~~~aFe~~a~l~eL~L~~N~--------------l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l 351 (498)
T KOG4237|consen 286 ITRIEDGAFEGAAELQELYLTRNK--------------LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTL 351 (498)
T ss_pred cchhhhhhhcchhhhhhhhcCcch--------------HHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeee
Confidence 333445667788899999999988 2222334567788999999999988764 5555578889999
Q ss_pred EEeCCCC
Q 037465 341 YLSSCFN 347 (432)
Q Consensus 341 ~l~~~~~ 347 (432)
++-.|..
T Consensus 352 ~l~~Np~ 358 (498)
T KOG4237|consen 352 NLLSNPF 358 (498)
T ss_pred ehccCcc
Confidence 8877654
No 25
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.09 E-value=1.4e-12 Score=119.28 Aligned_cols=89 Identities=20% Similarity=0.141 Sum_probs=47.7
Q ss_pred CCCCCcEEEEeeeCCCC---CChhhhccCCCcEEEEeCCCCCCCC--CC----CCCcc-cceEeccccccccccCccccC
Q 037465 310 PPVNVEELWIVYYGGNI---FPKWLTSLTNLRNLYLSSCFNCEHL--PP----LGKLP-LEKLTLYNLKSVKRVGNEFLG 379 (432)
Q Consensus 310 ~~~~L~~L~l~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~l--~~----~~~l~-L~~L~l~~c~~l~~~~~~~~~ 379 (432)
.++.|+.+++..+.... +...-.++|.|+.|.+++|..+++. .. -..+. |+.+.+++|+.+++.-.+.+.
T Consensus 344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~ 423 (483)
T KOG4341|consen 344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS 423 (483)
T ss_pred CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh
Confidence 34555555555543322 1111126667777777766555433 11 12344 677777777766655444442
Q ss_pred CCCCCCCCCCCCCCCcceEEEeCCcccccc
Q 037465 380 IEESSEDDPSSSSSSSSELSIEGCPLLENR 409 (432)
Q Consensus 380 ~~~~~~~~~~~~~~~L~~L~i~~cp~L~~~ 409 (432)
.+++|+.+++.+|-..+.-
T Consensus 424 -----------~c~~Leri~l~~~q~vtk~ 442 (483)
T KOG4341|consen 424 -----------ICRNLERIELIDCQDVTKE 442 (483)
T ss_pred -----------hCcccceeeeechhhhhhh
Confidence 3667777777776655544
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.08 E-value=7e-12 Score=118.97 Aligned_cols=94 Identities=31% Similarity=0.482 Sum_probs=47.3
Q ss_pred CcccccCccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCcc
Q 037465 133 NLITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIG 212 (432)
Q Consensus 133 ~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~ 212 (432)
+....+|..+..+..|..+.+..|.+..+|..+..+..|.+|+++.|+ +..+|..++.| -|+.|.+++| .++.+|..
T Consensus 85 NR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~l-pLkvli~sNN-kl~~lp~~ 161 (722)
T KOG0532|consen 85 NRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDL-PLKVLIVSNN-KLTSLPEE 161 (722)
T ss_pred cccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcC-cceeEEEecC-ccccCCcc
Confidence 444455555555555555555555555555555555555555555554 44455444433 2455555444 44445555
Q ss_pred CCcccccccccceEecc
Q 037465 213 ISKLTSLRTLGKFVVGG 229 (432)
Q Consensus 213 l~~l~~L~~L~l~~~~~ 229 (432)
++.+..|..|+.+.|..
T Consensus 162 ig~~~tl~~ld~s~nei 178 (722)
T KOG0532|consen 162 IGLLPTLAHLDVSKNEI 178 (722)
T ss_pred cccchhHHHhhhhhhhh
Confidence 55555555555554444
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.06 E-value=1.1e-11 Score=111.09 Aligned_cols=260 Identities=22% Similarity=0.173 Sum_probs=124.5
Q ss_pred cccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccc-------cCCccccEE
Q 037465 79 SFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENV-------GKLIHLKYL 151 (432)
Q Consensus 79 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~-------~~l~~L~~L 151 (432)
....+..++.+++++|.+.. ..-.. +...+.+.++|+..+++.. |+| .....+|+.+ ...++|++|
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~-EAa~~-i~~~L~~~~~L~~v~~sd~--ftG---R~~~Ei~e~L~~l~~aL~~~~~L~~l 97 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGT-EAARA-IAKVLASKKELREVNLSDM--FTG---RLKDEIPEALKMLSKALLGCPKLQKL 97 (382)
T ss_pred HhcccCceEEEeccCCchhH-HHHHH-HHHHHhhcccceeeehHhh--hcC---CcHHHHHHHHHHHHHHHhcCCceeEe
Confidence 34556677778888875422 11111 3344666677777777762 222 3333444332 233455555
Q ss_pred EeCCcccc--c---cchhhhccCCccEEecccccccccCCh-hhhcccccceEEcCCCCccccCCccCCcccccccccce
Q 037465 152 NLSGLCIK--R---LPETLCELYNLQKLDIRWCRNLRELPA-GIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKF 225 (432)
Q Consensus 152 ~L~~~~l~--~---lp~~i~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~ 225 (432)
+||.|.+. . +-.-+..+..|++|.+.+|. ++..-. .+++ .|.+|. ....++.-+.|+++...
T Consensus 98 dLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~--al~~l~---------~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 98 DLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGR--ALFELA---------VNKKAASKPKLRVFICG 165 (382)
T ss_pred eccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHH--HHHHHH---------HHhccCCCcceEEEEee
Confidence 55555533 1 11223444555555555554 221110 0100 000000 00112334455655555
Q ss_pred EecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhh
Q 037465 226 VVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLL 305 (432)
Q Consensus 226 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 305 (432)
.|.....++ ......+...+.|+.+.+......+.........+..+++|+.|++.+|.+ .......+.
T Consensus 166 rNrlen~ga-~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtf----------t~egs~~La 234 (382)
T KOG1909|consen 166 RNRLENGGA-TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTF----------TLEGSVALA 234 (382)
T ss_pred ccccccccH-HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchh----------hhHHHHHHH
Confidence 554432111 112223344455666555543332332334555666677777777766652 122334455
Q ss_pred hcCCCCCCCcEEEEeeeCCCC-----CChhhh-ccCCCcEEEEeCCCCCCCC-----CCCCCcc-cceEeccccc
Q 037465 306 KALQPPVNVEELWIVYYGGNI-----FPKWLT-SLTNLRNLYLSSCFNCEHL-----PPLGKLP-LEKLTLYNLK 368 (432)
Q Consensus 306 ~~l~~~~~L~~L~l~~~~~~~-----~~~~l~-~l~~L~~L~l~~~~~~~~l-----~~~~~l~-L~~L~l~~c~ 368 (432)
..+..+++|+.+++++|.... +...+. ..|+|+.|.+.+|.....- ..+...| |+.|+|++|.
T Consensus 235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 566666677777777665543 222222 5677777777777443311 0234466 7777777776
No 28
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.01 E-value=1.4e-11 Score=112.84 Aligned_cols=288 Identities=20% Similarity=0.111 Sum_probs=154.1
Q ss_pred CceEEEEeecCCCCC---CCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccc
Q 037465 61 GKVRHLGLNFEGGAP---LPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITE 137 (432)
Q Consensus 61 ~~i~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~ 137 (432)
..++.+++.+..-.. +-..-.+|+++..|.+.+|. .+++....+.-..|++|++|++..|..+|+ ..++.
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~----~iTd~s~~sla~~C~~l~~l~L~~c~~iT~---~~Lk~ 210 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK----KITDSSLLSLARYCRKLRHLNLHSCSSITD---VSLKY 210 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcce----eccHHHHHHHHHhcchhhhhhhcccchhHH---HHHHH
Confidence 455666666553322 22233567777777777775 555555555556677777777777633222 22221
Q ss_pred cCccccCCccccEEEeCCcc-cc--ccchhhhccCCccEEecccccccc--cCChhhhcccccceEEcCCCCccccCCcc
Q 037465 138 IPENVGKLIHLKYLNLSGLC-IK--RLPETLCELYNLQKLDIRWCRNLR--ELPAGIGKLMNMRSLLNDNTRSLKYMPIG 212 (432)
Q Consensus 138 lp~~~~~l~~L~~L~L~~~~-l~--~lp~~i~~l~~L~~L~l~~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~~p~~ 212 (432)
+ ...+++|+||+++||. +. .+-.....+++++.+.+++|...+ .+...-+.+..+..+++..|..++....+
T Consensus 211 l---a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~ 287 (483)
T KOG4341|consen 211 L---AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLW 287 (483)
T ss_pred H---HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHH
Confidence 2 2346777777777776 43 233344555666666666654221 11111123444555565566443332211
Q ss_pred --CCcccccccccceEecccccCCCCcCccccc-cCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCC
Q 037465 213 --ISKLTSLRTLGKFVVGGGVDGSSTCRLESLK-NLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDG 289 (432)
Q Consensus 213 --l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 289 (432)
-..+..|+.+....+...+ ......++ +..+|+.+-+.+|....+. .+...-.++++|+.+++..+..
T Consensus 288 ~i~~~c~~lq~l~~s~~t~~~----d~~l~aLg~~~~~L~~l~l~~c~~fsd~--~ft~l~rn~~~Le~l~~e~~~~--- 358 (483)
T KOG4341|consen 288 LIACGCHALQVLCYSSCTDIT----DEVLWALGQHCHNLQVLELSGCQQFSDR--GFTMLGRNCPHLERLDLEECGL--- 358 (483)
T ss_pred HHhhhhhHhhhhcccCCCCCc----hHHHHHHhcCCCceEEEeccccchhhhh--hhhhhhcCChhhhhhcccccce---
Confidence 1245566777666665543 33344443 4566777777776654432 2222234566777777766651
Q ss_pred chHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCCC------hhhhccCCCcEEEEeCCCCCCC--CCCCCCcc-cc
Q 037465 290 EDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFP------KWLTSLTNLRNLYLSSCFNCEH--LPPLGKLP-LE 360 (432)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~------~~l~~l~~L~~L~l~~~~~~~~--l~~~~~l~-L~ 360 (432)
....++...-..++.|+.+.+++|....-. ..-..+..|..|.+++|+.+++ +..+...+ ||
T Consensus 359 ---------~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Le 429 (483)
T KOG4341|consen 359 ---------ITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLE 429 (483)
T ss_pred ---------ehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccc
Confidence 022234444556677777777765543311 1112456677777777766552 33455566 77
Q ss_pred eEeccccccccccCcc
Q 037465 361 KLTLYNLKSVKRVGNE 376 (432)
Q Consensus 361 ~L~l~~c~~l~~~~~~ 376 (432)
++++.+|+.++.-+..
T Consensus 430 ri~l~~~q~vtk~~i~ 445 (483)
T KOG4341|consen 430 RIELIDCQDVTKEAIS 445 (483)
T ss_pred eeeeechhhhhhhhhH
Confidence 7777777766666554
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.97 E-value=1.4e-10 Score=104.16 Aligned_cols=254 Identities=20% Similarity=0.127 Sum_probs=161.1
Q ss_pred hhccCCcceEEEeCCCCCCCCCCCCcccc-----cCccccCCccccEEEeCCcccc----ccchh-------hhccCCcc
Q 037465 109 LFSKLACLRALVISQSSSFSHPGPNLITE-----IPENVGKLIHLKYLNLSGLCIK----RLPET-------LCELYNLQ 172 (432)
Q Consensus 109 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~~-----lp~~~~~l~~L~~L~L~~~~l~----~lp~~-------i~~l~~L~ 172 (432)
....+..+..+++++| .++. +...+.+.+.|+..+++.-... .+|+. +..+++|+
T Consensus 25 ~~~~~~s~~~l~lsgn---------t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~ 95 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGN---------TFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQ 95 (382)
T ss_pred HhcccCceEEEeccCC---------chhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCcee
Confidence 3667788888888884 4432 4455666778888888754322 34433 34556788
Q ss_pred EEecccccccccCChh----hhcccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCcCccccccCccC
Q 037465 173 KLDIRWCRNLRELPAG----IGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLL 248 (432)
Q Consensus 173 ~L~l~~~~~~~~lp~~----i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L 248 (432)
+|+|++|-+-..-+.. +.+++.|++|++.+|.....-...++. .|.+|. .....+.-+.|
T Consensus 96 ~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--------------~~kk~~~~~~L 159 (382)
T KOG1909|consen 96 KLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--------------VNKKAASKPKL 159 (382)
T ss_pred EeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--------------HHhccCCCcce
Confidence 8888887754444433 446677777777777332211111111 233332 11122334678
Q ss_pred CceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCC--
Q 037465 249 RECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNI-- 326 (432)
Q Consensus 249 ~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-- 326 (432)
|++...+..--..........+...+.|+.+.+..|.+.. .........+..+++|+.|++.+|..+.
T Consensus 160 rv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~----------eG~~al~eal~~~~~LevLdl~DNtft~eg 229 (382)
T KOG1909|consen 160 RVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRP----------EGVTALAEALEHCPHLEVLDLRDNTFTLEG 229 (382)
T ss_pred EEEEeeccccccccHHHHHHHHHhccccceEEEecccccC----------chhHHHHHHHHhCCcceeeecccchhhhHH
Confidence 8887776433333445666778888999999999988321 1234566778899999999999987654
Q ss_pred ---CChhhhccCCCcEEEEeCCCCCCCCC-----C-CCCcc-cceEeccccccccccCccccCCCCCCCCCCCCCCCCcc
Q 037465 327 ---FPKWLTSLTNLRNLYLSSCFNCEHLP-----P-LGKLP-LEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSS 396 (432)
Q Consensus 327 ---~~~~l~~l~~L~~L~l~~~~~~~~l~-----~-~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 396 (432)
+...++.+|+|+.|++++|.....=. . -...| |+.|.+.+|. ++.-....+.. +....|.|+
T Consensus 230 s~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~-------~~~ek~dL~ 301 (382)
T KOG1909|consen 230 SVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALAA-------CMAEKPDLE 301 (382)
T ss_pred HHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHHH-------HHhcchhhH
Confidence 34455578999999999996444211 1 23478 9999999998 55544332222 112478999
Q ss_pred eEEEeCCcc
Q 037465 397 ELSIEGCPL 405 (432)
Q Consensus 397 ~L~i~~cp~ 405 (432)
.|.+.+|.-
T Consensus 302 kLnLngN~l 310 (382)
T KOG1909|consen 302 KLNLNGNRL 310 (382)
T ss_pred HhcCCcccc
Confidence 999999865
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=6.2e-11 Score=109.27 Aligned_cols=193 Identities=16% Similarity=0.143 Sum_probs=107.1
Q ss_pred CCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccc---cCccccCCccccEEE
Q 037465 76 LPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITE---IPENVGKLIHLKYLN 152 (432)
Q Consensus 76 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~---lp~~~~~l~~L~~L~ 152 (432)
+...-.++++|+...+.++++.. .+ .......|++++.|||+. +.+.. +...+..|++|+.|+
T Consensus 113 i~akQsn~kkL~~IsLdn~~V~~---~~--~~~~~k~~~~v~~LdLS~---------NL~~nw~~v~~i~eqLp~Le~LN 178 (505)
T KOG3207|consen 113 IAAKQSNLKKLREISLDNYRVED---AG--IEEYSKILPNVRDLDLSR---------NLFHNWFPVLKIAEQLPSLENLN 178 (505)
T ss_pred HHHHhhhHHhhhheeecCccccc---cc--hhhhhhhCCcceeecchh---------hhHHhHHHHHHHHHhcccchhcc
Confidence 34445667777777777775311 11 113456677777777777 44333 233345677777777
Q ss_pred eCCccccccch--hhhccCCccEEeccccccc-ccCChhhhcccccceEEcCCCCccccCCccCCcccccccccceEecc
Q 037465 153 LSGLCIKRLPE--TLCELYNLQKLDIRWCRNL-RELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGG 229 (432)
Q Consensus 153 L~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~-~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~ 229 (432)
++.|.+..... .-..+++|+.|.+++|... ..+...+..+++|+.|++..|............++.|++|+++++..
T Consensus 179 ls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l 258 (505)
T KOG3207|consen 179 LSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL 258 (505)
T ss_pred cccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc
Confidence 77777542211 1235667777777777733 22333344677777777777743222222234566777777777766
Q ss_pred cccCCCCcCccccccCccCCceeeCCCC--CCCCchhhhhcccccccCCceEEEeeccc
Q 037465 230 GVDGSSTCRLESLKNLQLLRECGIEGLG--NVSHLDEAERLQLYNQQNLLCLHLEFGRV 286 (432)
Q Consensus 230 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 286 (432)
.. .......+.++.|+.|.++.+. .+...+.........+++|+.|.+..|++
T Consensus 259 i~----~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 259 ID----FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred cc----cccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 64 3344555666777766655422 12111111112234556677777766663
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.94 E-value=1e-09 Score=92.27 Aligned_cols=131 Identities=27% Similarity=0.279 Sum_probs=49.7
Q ss_pred cccCcccEEEEecCCcCccCccCCcchhhhc-cCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCcccc
Q 037465 81 FEFDRLRSLLIYDESLSNLSLNGSILPELFS-KLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIK 159 (432)
Q Consensus 81 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~ 159 (432)
-++.+++.|++.+|.++. +.. +. .+.+|+.|++++ +.++.+. .+..+++|++|++++|.|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~-------Ie~-L~~~l~~L~~L~Ls~---------N~I~~l~-~l~~L~~L~~L~L~~N~I~ 77 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIST-------IEN-LGATLDKLEVLDLSN---------NQITKLE-GLPGLPRLKTLDLSNNRIS 77 (175)
T ss_dssp ---------------------------S---TT-TT--EEE-TT---------S--S--T-T----TT--EEE--SS---
T ss_pred cccccccccccccccccc-------ccc-hhhhhcCCCEEECCC---------CCCcccc-CccChhhhhhcccCCCCCC
Confidence 455567888888886532 222 33 567888888888 6677774 5677888888888888888
Q ss_pred ccchhh-hccCCccEEecccccccccCC--hhhhcccccceEEcCCCCccccC---CccCCcccccccccceEeccc
Q 037465 160 RLPETL-CELYNLQKLDIRWCRNLRELP--AGIGKLMNMRSLLNDNTRSLKYM---PIGISKLTSLRTLGKFVVGGG 230 (432)
Q Consensus 160 ~lp~~i-~~l~~L~~L~l~~~~~~~~lp--~~i~~l~~L~~L~l~~~~~~~~~---p~~l~~l~~L~~L~l~~~~~~ 230 (432)
++++.+ ..+++|++|++++|. +..+- ..+..+++|+.|++.+|+....- ...+..+++|+.||-......
T Consensus 78 ~i~~~l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~~ 153 (175)
T PF14580_consen 78 SISEGLDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTEE 153 (175)
T ss_dssp S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS-
T ss_pred ccccchHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEccHH
Confidence 886555 357888888888887 43321 34667888888888888665431 123567888888887665443
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.93 E-value=6.3e-10 Score=93.51 Aligned_cols=101 Identities=28% Similarity=0.331 Sum_probs=22.9
Q ss_pred ceEEEEeecCCCCCCCcccc-ccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCc
Q 037465 62 KVRHLGLNFEGGAPLPMSFF-EFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE 140 (432)
Q Consensus 62 ~i~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~ 140 (432)
+.+.|++.++.+..+. .+. .+.+|+.|++++|.++. +.. +..++.|++|++++ |.++.+++
T Consensus 20 ~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~-------l~~-l~~L~~L~~L~L~~---------N~I~~i~~ 81 (175)
T PF14580_consen 20 KLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITK-------LEG-LPGLPRLKTLDLSN---------NRISSISE 81 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S---------TT-----TT--EEE--S---------S---S-CH
T ss_pred cccccccccccccccc-chhhhhcCCCEEECCCCCCcc-------ccC-ccChhhhhhcccCC---------CCCCcccc
Confidence 3445555555554432 222 34455555555553321 222 44455555555555 44444433
Q ss_pred cc-cCCccccEEEeCCccccccc--hhhhccCCccEEeccccc
Q 037465 141 NV-GKLIHLKYLNLSGLCIKRLP--ETLCELYNLQKLDIRWCR 180 (432)
Q Consensus 141 ~~-~~l~~L~~L~L~~~~l~~lp--~~i~~l~~L~~L~l~~~~ 180 (432)
.+ ..+++|+.|++++|.|..+. ..+..+++|+.|++.+|+
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence 33 23455555555555544222 234445555555555554
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.91 E-value=3.7e-11 Score=114.18 Aligned_cols=148 Identities=26% Similarity=0.375 Sum_probs=113.5
Q ss_pred EEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCcccc
Q 037465 64 RHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVG 143 (432)
Q Consensus 64 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~ 143 (432)
..+.++.+.+..+|.++.++..|.+|+++.|.++. +|..++.|+ |++|.+++ +.++.+|..++
T Consensus 101 e~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~-------lp~~lC~lp-Lkvli~sN---------Nkl~~lp~~ig 163 (722)
T KOG0532|consen 101 ESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSH-------LPDGLCDLP-LKVLIVSN---------NKLTSLPEEIG 163 (722)
T ss_pred HHHHHHhccceecchhhhhhhHHHHhhhccchhhc-------CChhhhcCc-ceeEEEec---------CccccCCcccc
Confidence 33445555566677777777778888887775321 344344443 68888888 77888888888
Q ss_pred CCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccccccccc
Q 037465 144 KLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLG 223 (432)
Q Consensus 144 ~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~ 223 (432)
.+..|..|+.+.|.+..+|..++.+.+|+.|.++.|. +..+|..+. .-.|..||++.| .+.++|..|.+|+.|++|.
T Consensus 164 ~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~El~-~LpLi~lDfScN-kis~iPv~fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 164 LLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELC-SLPLIRLDFSCN-KISYLPVDFRKMRHLQVLQ 240 (722)
T ss_pred cchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHh-CCceeeeecccC-ceeecchhhhhhhhheeee
Confidence 8888888888888888888888888888888888887 778888887 446888888887 6778888888999999999
Q ss_pred ceEecccc
Q 037465 224 KFVVGGGV 231 (432)
Q Consensus 224 l~~~~~~~ 231 (432)
+.+|....
T Consensus 241 LenNPLqS 248 (722)
T KOG0532|consen 241 LENNPLQS 248 (722)
T ss_pred eccCCCCC
Confidence 88887765
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=5.2e-10 Score=103.29 Aligned_cols=208 Identities=16% Similarity=0.082 Sum_probs=142.7
Q ss_pred cCCceEEEEeecCCCCCCC--ccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccc
Q 037465 59 FGGKVRHLGLNFEGGAPLP--MSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLIT 136 (432)
Q Consensus 59 ~~~~i~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~ 136 (432)
..++++.+++........+ .....|++++.|+++.|-+.+ ...+..+...+|+|+.|+++.| .+.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~n----w~~v~~i~eqLp~Le~LNls~N---------rl~ 185 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHN----WFPVLKIAEQLPSLENLNLSSN---------RLS 185 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHh----HHHHHHHHHhcccchhcccccc---------ccc
Confidence 4678888999998887755 367889999999999996533 2224455788999999999994 443
Q ss_pred ccCcc--ccCCccccEEEeCCcccc--ccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCC--
Q 037465 137 EIPEN--VGKLIHLKYLNLSGLCIK--RLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMP-- 210 (432)
Q Consensus 137 ~lp~~--~~~l~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p-- 210 (432)
...++ -..+++|+.|.++.|.+. .+-...-.+++|+.|++.+|..+..-.....-+..|++|++++|+... .+
T Consensus 186 ~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~ 264 (505)
T KOG3207|consen 186 NFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQG 264 (505)
T ss_pred CCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccc
Confidence 33222 235789999999999976 444455678999999999995333222233456789999999995544 34
Q ss_pred ccCCcccccccccceEecccccCCCCc-CccccccCccCCceeeCCCCC--CCCchhhhhcccccccCCceEEEeecc
Q 037465 211 IGISKLTSLRTLGKFVVGGGVDGSSTC-RLESLKNLQLLRECGIEGLGN--VSHLDEAERLQLYNQQNLLCLHLEFGR 285 (432)
Q Consensus 211 ~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~--~~~~~~~~~~~l~~~~~L~~L~l~~~~ 285 (432)
..++.++.|+.|.+..+.......... .......+++|+.|.+..... +.. ...+..+++|+.|.+..+.
T Consensus 265 ~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~s-----l~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 265 YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRS-----LNHLRTLENLKHLRITLNY 337 (505)
T ss_pred cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccc-----cchhhccchhhhhhccccc
Confidence 447889999999998887764211111 112245678899988876332 211 2344556777777777666
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.80 E-value=6.7e-09 Score=100.94 Aligned_cols=154 Identities=30% Similarity=0.319 Sum_probs=109.4
Q ss_pred hccCCcceEEEeCCCCCCCCCCCCcccccCccccCCc-cccEEEeCCccccccchhhhccCCccEEecccccccccCChh
Q 037465 110 FSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLI-HLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAG 188 (432)
Q Consensus 110 ~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~-~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~ 188 (432)
+...+.++.|++.+ +.+..+|.....+. +|+.|+++++.+..+|..+..+++|+.|++++|. +..+|..
T Consensus 112 ~~~~~~l~~L~l~~---------n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~ 181 (394)
T COG4886 112 LLELTNLTSLDLDN---------NNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKL 181 (394)
T ss_pred hhcccceeEEecCC---------cccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhh
Confidence 55567899999988 78888888888775 9999999999999988888999999999999988 8888877
Q ss_pred hhcccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhc
Q 037465 189 IGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERL 268 (432)
Q Consensus 189 i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 268 (432)
.+.+++|+.|++++| ....+|..++....|+++.+..+.... .+..+.++.++..+.+..-.. .. ...
T Consensus 182 ~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~------~~~~~~~~~~l~~l~l~~n~~-~~----~~~ 249 (394)
T COG4886 182 LSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNSIIE------LLSSLSNLKNLSGLELSNNKL-ED----LPE 249 (394)
T ss_pred hhhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCccee------cchhhhhcccccccccCCcee-ee----ccc
Confidence 768889999999998 566777766667778888888775322 444455555555554333111 00 023
Q ss_pred ccccccCCceEEEeecc
Q 037465 269 QLYNQQNLLCLHLEFGR 285 (432)
Q Consensus 269 ~l~~~~~L~~L~l~~~~ 285 (432)
.+..+++++.|++++|.
T Consensus 250 ~~~~l~~l~~L~~s~n~ 266 (394)
T COG4886 250 SIGNLSNLETLDLSNNQ 266 (394)
T ss_pred hhccccccceecccccc
Confidence 34444555555555554
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.76 E-value=7.1e-09 Score=100.77 Aligned_cols=192 Identities=27% Similarity=0.280 Sum_probs=137.6
Q ss_pred EEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCC-cceEEEeCCCCCCCCCCCCcccccCcccc
Q 037465 65 HLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLA-CLRALVISQSSSFSHPGPNLITEIPENVG 143 (432)
Q Consensus 65 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~~~~~~~~~~~~~~~lp~~~~ 143 (432)
.+....+........+...+.++.|++.++.+.. ++....... +|+.|++++ +.+..+|..++
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~-------i~~~~~~~~~nL~~L~l~~---------N~i~~l~~~~~ 160 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITD-------IPPLIGLLKSNLKELDLSD---------NKIESLPSPLR 160 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCccccc-------Cccccccchhhcccccccc---------cchhhhhhhhh
Confidence 3555555543334455566788889988885432 444355553 899999998 78888887888
Q ss_pred CCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccccccccc
Q 037465 144 KLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLG 223 (432)
Q Consensus 144 ~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~ 223 (432)
.+++|+.|++++|.+..+|...+.+++|+.|++++|. +..+|..+..+..|++|.+++|. ....+..+..+.++..+.
T Consensus 161 ~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~ 238 (394)
T COG4886 161 NLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLE 238 (394)
T ss_pred ccccccccccCCchhhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccc
Confidence 8999999999999999998777788999999999888 88888777777779999888884 334455567777777777
Q ss_pred ceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccc
Q 037465 224 KFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRV 286 (432)
Q Consensus 224 l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 286 (432)
+..+.... .+..++.++.++.+++..... ... ..+....+++.|+++++.+
T Consensus 239 l~~n~~~~------~~~~~~~l~~l~~L~~s~n~i-~~i-----~~~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 239 LSNNKLED------LPESIGNLSNLETLDLSNNQI-SSI-----SSLGSLTNLRELDLSGNSL 289 (394)
T ss_pred cCCceeee------ccchhccccccceeccccccc-ccc-----ccccccCccCEEeccCccc
Confidence 65555432 255666777788888776322 221 1267788889999988874
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.69 E-value=7.7e-09 Score=91.27 Aligned_cols=132 Identities=22% Similarity=0.026 Sum_probs=81.0
Q ss_pred cccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHH
Q 037465 215 KLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEER 294 (432)
Q Consensus 215 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 294 (432)
..+.|++++++++.+.. ...+..-++.++.|+++...- . ....+..+++|+.|++++|.
T Consensus 282 TWq~LtelDLS~N~I~~------iDESvKL~Pkir~L~lS~N~i-~-----~v~nLa~L~~L~~LDLS~N~--------- 340 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQ------IDESVKLAPKLRRLILSQNRI-R-----TVQNLAELPQLQLLDLSGNL--------- 340 (490)
T ss_pred hHhhhhhccccccchhh------hhhhhhhccceeEEeccccce-e-----eehhhhhcccceEeecccch---------
Confidence 34455666666555433 333344445566666554211 1 11225566777777777775
Q ss_pred hhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCC--CCCCCCCcc-cceEecccccccc
Q 037465 295 RRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCE--HLPPLGKLP-LEKLTLYNLKSVK 371 (432)
Q Consensus 295 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~l~~~~~l~-L~~L~l~~c~~l~ 371 (432)
......+-.++.+.++|.+.+|.... -..+..+=+|.+|++++|+.-. .+..+|++| |+++.+.+++ +.
T Consensus 341 ------Ls~~~Gwh~KLGNIKtL~La~N~iE~-LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP-l~ 412 (490)
T KOG1259|consen 341 ------LAECVGWHLKLGNIKTLKLAQNKIET-LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP-LA 412 (490)
T ss_pred ------hHhhhhhHhhhcCEeeeehhhhhHhh-hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC-cc
Confidence 23344444566778888888777766 4456677788888888885322 445688899 9999988888 65
Q ss_pred ccCc
Q 037465 372 RVGN 375 (432)
Q Consensus 372 ~~~~ 375 (432)
.+++
T Consensus 413 ~~vd 416 (490)
T KOG1259|consen 413 GSVD 416 (490)
T ss_pred ccch
Confidence 5544
No 38
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.6e-09 Score=95.41 Aligned_cols=83 Identities=20% Similarity=0.074 Sum_probs=46.2
Q ss_pred ccEEEeCCcccc--ccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCc--cCCccccccccc
Q 037465 148 LKYLNLSGLCIK--RLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPI--GISKLTSLRTLG 223 (432)
Q Consensus 148 L~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~--~l~~l~~L~~L~ 223 (432)
|++|+|+...|+ ++...+..+.+|+.|.+.+.+..+.+...+++-.+|+.|+++.|........ .+.+|+.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 666666666554 3444555666666666666654444545555566666666666644443321 234566666666
Q ss_pred ceEeccc
Q 037465 224 KFVVGGG 230 (432)
Q Consensus 224 l~~~~~~ 230 (432)
++.|...
T Consensus 267 lsWc~l~ 273 (419)
T KOG2120|consen 267 LSWCFLF 273 (419)
T ss_pred chHhhcc
Confidence 6555443
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.59 E-value=1.4e-07 Score=96.35 Aligned_cols=106 Identities=23% Similarity=0.347 Sum_probs=81.5
Q ss_pred cceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCcccc-ccchhhhccCCccEEecccccccccCChhhhccc
Q 037465 115 CLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIK-RLPETLCELYNLQKLDIRWCRNLRELPAGIGKLM 193 (432)
Q Consensus 115 ~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~ 193 (432)
.++.|+|++| ...+.+|..++.+++|+.|+|++|.+. .+|..++.+++|+.|++++|...+.+|..++.++
T Consensus 419 ~v~~L~L~~n--------~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~ 490 (623)
T PLN03150 419 FIDGLGLDNQ--------GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490 (623)
T ss_pred EEEEEECCCC--------CccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCC
Confidence 3777888884 334567888888888888888888876 7888888888888888888886678888888888
Q ss_pred ccceEEcCCCCccccCCccCCcc-cccccccceEec
Q 037465 194 NMRSLLNDNTRSLKYMPIGISKL-TSLRTLGKFVVG 228 (432)
Q Consensus 194 ~L~~L~l~~~~~~~~~p~~l~~l-~~L~~L~l~~~~ 228 (432)
+|+.|++++|...+.+|..++.. .++..+++.++.
T Consensus 491 ~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 491 SLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 88888888888777888776543 345555555543
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.58 E-value=1.3e-08 Score=89.91 Aligned_cols=207 Identities=18% Similarity=0.099 Sum_probs=135.4
Q ss_pred cchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCcCcc
Q 037465 161 LPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLE 240 (432)
Q Consensus 161 lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 240 (432)
+|-.+..+++|+++.++.|. ...+-+-...-+.|+.+.+.+... ... +.+-..+.+...........+ +....
T Consensus 206 l~f~l~~f~~l~~~~~s~~~-~~~i~~~~~~kptl~t~~v~~s~~-~~~-~~l~pe~~~~D~~~~E~~t~~----G~~~~ 278 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALS-TENIVDIELLKPTLQTICVHNTTI-QDV-PSLLPETILADPSGSEPSTSN----GSALV 278 (490)
T ss_pred cccchHHhhhhheeeeeccc-hhheeceeecCchhheeeeecccc-ccc-ccccchhhhcCccCCCCCccC----CceEE
Confidence 44456667788888888776 444433333446677777665421 111 122233344333332222221 33334
Q ss_pred ccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEe
Q 037465 241 SLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIV 320 (432)
Q Consensus 241 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 320 (432)
.+...+.|+.+++++.. + .....+.+-.|.++.|+++.|.+ .....+..+++|+.|+++
T Consensus 279 ~~dTWq~LtelDLS~N~----I-~~iDESvKL~Pkir~L~lS~N~i----------------~~v~nLa~L~~L~~LDLS 337 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNL----I-TQIDESVKLAPKLRRLILSQNRI----------------RTVQNLAELPQLQLLDLS 337 (490)
T ss_pred ecchHhhhhhccccccc----h-hhhhhhhhhccceeEEeccccce----------------eeehhhhhcccceEeecc
Confidence 44455667888887621 1 23345667789999999999882 122347778999999999
Q ss_pred eeCCCCCChhhhccCCCcEEEEeCCCCCCCCCCCCCcc-cceEeccccccccccCccccCCCCCCCCCCCCCCCCcceEE
Q 037465 321 YYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELS 399 (432)
Q Consensus 321 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 399 (432)
+|....+..|-..+.+.+.|.+++| .+..+..++++= |..|++++++ |+.+..- -+ .+.+|.|+.+.
T Consensus 338 ~N~Ls~~~Gwh~KLGNIKtL~La~N-~iE~LSGL~KLYSLvnLDl~~N~-Ie~ldeV-~~---------IG~LPCLE~l~ 405 (490)
T KOG1259|consen 338 GNLLAECVGWHLKLGNIKTLKLAQN-KIETLSGLRKLYSLVNLDLSSNQ-IEELDEV-NH---------IGNLPCLETLR 405 (490)
T ss_pred cchhHhhhhhHhhhcCEeeeehhhh-hHhhhhhhHhhhhheeccccccc-hhhHHHh-cc---------cccccHHHHHh
Confidence 9999888888778999999999999 677787788888 9999999887 6655321 11 14689999999
Q ss_pred EeCCcccc
Q 037465 400 IEGCPLLE 407 (432)
Q Consensus 400 i~~cp~L~ 407 (432)
+.++|--.
T Consensus 406 L~~NPl~~ 413 (490)
T KOG1259|consen 406 LTGNPLAG 413 (490)
T ss_pred hcCCCccc
Confidence 99987543
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.52 E-value=1.6e-07 Score=96.06 Aligned_cols=106 Identities=16% Similarity=0.155 Sum_probs=85.0
Q ss_pred cccEEEeCCcccc-ccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccccccce
Q 037465 147 HLKYLNLSGLCIK-RLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKF 225 (432)
Q Consensus 147 ~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~ 225 (432)
.++.|+|+++.+. .+|..++.+++|+.|++++|...+.+|..++.+++|+.|++++|...+.+|..++.+++|+.|++.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999876 788899999999999999998667899889999999999999998888899989999999999998
Q ss_pred EecccccCCCCcCccccccC-ccCCceeeCCCC
Q 037465 226 VVGGGVDGSSTCRLESLKNL-QLLRECGIEGLG 257 (432)
Q Consensus 226 ~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~ 257 (432)
+|... ...+..+..+ .++..+++.+..
T Consensus 499 ~N~l~-----g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLS-----GRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCccc-----ccCChHHhhccccCceEEecCCc
Confidence 88765 3344444432 345556666543
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=3.9e-09 Score=93.03 Aligned_cols=205 Identities=18% Similarity=0.133 Sum_probs=110.1
Q ss_pred CCceEEEEeecCCCCC--CCccccc-cCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccc
Q 037465 60 GGKVRHLGLNFEGGAP--LPMSFFE-FDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLIT 136 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~--~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~ 136 (432)
...|..+.+...-+++ +.+.+.- -+.|+.+++++. .++...+...++.|.+|+-|.+.++ ..-.
T Consensus 158 ~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s-----~it~stl~~iLs~C~kLk~lSlEg~--------~LdD 224 (419)
T KOG2120|consen 158 SRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNS-----VITVSTLHGILSQCSKLKNLSLEGL--------RLDD 224 (419)
T ss_pred hCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchh-----heeHHHHHHHHHHHHhhhhcccccc--------ccCc
Confidence 3345555544433332 2222222 235777887777 4455556666777888888887773 2223
Q ss_pred ccCccccCCccccEEEeCCcc-ccc--cchhhhccCCccEEecccccccccC-Chhhhc-ccccceEEcCCCCcccc---
Q 037465 137 EIPENVGKLIHLKYLNLSGLC-IKR--LPETLCELYNLQKLDIRWCRNLREL-PAGIGK-LMNMRSLLNDNTRSLKY--- 208 (432)
Q Consensus 137 ~lp~~~~~l~~L~~L~L~~~~-l~~--lp~~i~~l~~L~~L~l~~~~~~~~l-p~~i~~-l~~L~~L~l~~~~~~~~--- 208 (432)
.+...+.+-.+|+.|+++.|. +++ +...+..++.|+.|++++|...... ...+.. -.+|+.|+++++...-.
T Consensus 225 ~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh 304 (419)
T KOG2120|consen 225 PIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSH 304 (419)
T ss_pred HHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhH
Confidence 345566667778888887776 552 2334667777788888877633322 111222 24677777776632111
Q ss_pred CCccCCcccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeec
Q 037465 209 MPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFG 284 (432)
Q Consensus 209 ~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 284 (432)
+..-..++++|.+|+++++.... ...+..+-+++.|+.+++++|-.+.. .....+...+.|.+|++.++
T Consensus 305 ~~tL~~rcp~l~~LDLSD~v~l~----~~~~~~~~kf~~L~~lSlsRCY~i~p---~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 305 LSTLVRRCPNLVHLDLSDSVMLK----NDCFQEFFKFNYLQHLSLSRCYDIIP---ETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HHHHHHhCCceeeeccccccccC----chHHHHHHhcchheeeehhhhcCCCh---HHeeeeccCcceEEEEeccc
Confidence 11112356666666666665543 33444455555556666655544432 22334444555555555444
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.41 E-value=5e-07 Score=62.25 Aligned_cols=57 Identities=33% Similarity=0.480 Sum_probs=29.4
Q ss_pred cceEEEeCCCCCCCCCCCCcccccC-ccccCCccccEEEeCCccccccch-hhhccCCccEEeccccc
Q 037465 115 CLRALVISQSSSFSHPGPNLITEIP-ENVGKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCR 180 (432)
Q Consensus 115 ~L~~L~L~~~~~~~~~~~~~~~~lp-~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~ 180 (432)
+|++|++++ +.+..+| ..|..+++|++|++++|.++.+++ .+..+++|++|++++|+
T Consensus 2 ~L~~L~l~~---------n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSN---------NKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETS---------STESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCC---------CCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 455555555 4455553 244455555555555555555543 44555555555555543
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.38 E-value=4.8e-07 Score=62.32 Aligned_cols=59 Identities=37% Similarity=0.542 Sum_probs=36.9
Q ss_pred CcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-CccccCCccccEEEeCCcc
Q 037465 84 DRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-PENVGKLIHLKYLNLSGLC 157 (432)
Q Consensus 84 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~L~~~~ 157 (432)
++|++|++++|++ . .+.+..|..+++|++|++++ +.++.+ |..|..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l-----~-~i~~~~f~~l~~L~~L~l~~---------N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKL-----T-EIPPDSFSNLPNLETLDLSN---------NNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTE-----S-EECTTTTTTGTTESEEEETS---------SSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCC-----C-ccCHHHHcCCCCCCEeEccC---------CccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4566777777743 2 22344566777777777776 556666 3456667777777777665
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=3.8e-07 Score=80.71 Aligned_cols=231 Identities=17% Similarity=0.060 Sum_probs=123.7
Q ss_pred cccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCcccc-
Q 037465 81 FEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIK- 159 (432)
Q Consensus 81 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~- 159 (432)
+..+.+..|.+.++.+.+ .+. ...+-..+..++.|||.+|.+ ....++...+.+||+|++|+++.|.+.
T Consensus 42 ~s~ra~ellvln~~~id~---~gd-~~~~~~~~~~v~elDL~~N~i------SdWseI~~ile~lP~l~~LNls~N~L~s 111 (418)
T KOG2982|consen 42 SSLRALELLVLNGSIIDN---EGD-VMLFGSSVTDVKELDLTGNLI------SDWSEIGAILEQLPALTTLNLSCNSLSS 111 (418)
T ss_pred ccccchhhheecCCCCCc---chh-HHHHHHHhhhhhhhhcccchh------ccHHHHHHHHhcCccceEeeccCCcCCC
Confidence 334455566666765432 122 233346678888888888432 223345555677888888888888744
Q ss_pred ---ccchhhhccCCccEEeccccccc-ccCChhhhcccccceEEcCCCCccccCCccCCcccccccccceEecccccCCC
Q 037465 160 ---RLPETLCELYNLQKLDIRWCRNL-RELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSS 235 (432)
Q Consensus 160 ---~lp~~i~~l~~L~~L~l~~~~~~-~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~ 235 (432)
++| ..+.+|++|-+.++... ..+...+..++.+++|.++.| +++.+.+..+....
T Consensus 112 ~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N--------------~~rq~n~Dd~c~e~---- 170 (418)
T KOG2982|consen 112 DIKSLP---LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN--------------SLRQLNLDDNCIED---- 170 (418)
T ss_pred ccccCc---ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc--------------hhhhhccccccccc----
Confidence 444 35578888888876621 223333456677777777766 22222222221111
Q ss_pred CcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCc
Q 037465 236 TCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVE 315 (432)
Q Consensus 236 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 315 (432)
. -+.++.++..+|....- ........-++++..+.+..|++. ..........+|.+.
T Consensus 171 --~------s~~v~tlh~~~c~~~~w--~~~~~l~r~Fpnv~sv~v~e~PlK-------------~~s~ek~se~~p~~~ 227 (418)
T KOG2982|consen 171 --W------STEVLTLHQLPCLEQLW--LNKNKLSRIFPNVNSVFVCEGPLK-------------TESSEKGSEPFPSLS 227 (418)
T ss_pred --c------chhhhhhhcCCcHHHHH--HHHHhHHhhcccchheeeecCccc-------------chhhcccCCCCCcch
Confidence 0 01122222222211000 000111233566666777666531 222333444556666
Q ss_pred EEEEeeeCCCCC--ChhhhccCCCcEEEEeCCCCCCCCCC-------CCCcc-cceEecc
Q 037465 316 ELWIVYYGGNIF--PKWLTSLTNLRNLYLSSCFNCEHLPP-------LGKLP-LEKLTLY 365 (432)
Q Consensus 316 ~L~l~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~l~~-------~~~l~-L~~L~l~ 365 (432)
-|+|+.+....+ .+.+..+|+|..|.+++++....+.. ++.++ ++.|+=+
T Consensus 228 ~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 228 CLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred hhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 677766655442 34456899999999999887765542 35566 6666433
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.23 E-value=1.3e-07 Score=92.22 Aligned_cols=129 Identities=24% Similarity=0.260 Sum_probs=84.8
Q ss_pred ccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCcccccc
Q 037465 82 EFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRL 161 (432)
Q Consensus 82 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l 161 (432)
.+..+..+.+..|.+. . ....+..+.+|.+|++.. +.+..+...+..+++|++|++++|.|..+
T Consensus 70 ~l~~l~~l~l~~n~i~-----~--~~~~l~~~~~l~~l~l~~---------n~i~~i~~~l~~~~~L~~L~ls~N~I~~i 133 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIA-----K--ILNHLSKLKSLEALDLYD---------NKIEKIENLLSSLVNLQVLDLSFNKITKL 133 (414)
T ss_pred HhHhHHhhccchhhhh-----h--hhcccccccceeeeeccc---------cchhhcccchhhhhcchheeccccccccc
Confidence 3555566666666331 1 122366777788888887 66777754467788888888888887777
Q ss_pred chhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCC-ccCCcccccccccceEeccc
Q 037465 162 PETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMP-IGISKLTSLRTLGKFVVGGG 230 (432)
Q Consensus 162 p~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~ 230 (432)
. .+..++.|+.|++.+|. +..+. .+..++.|+.+++++|.....-+ . ...+.+++.+++.++...
T Consensus 134 ~-~l~~l~~L~~L~l~~N~-i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 134 E-GLSTLTLLKELNLSGNL-ISDIS-GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred c-chhhccchhhheeccCc-chhcc-CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 4 66677778888888877 55443 44557778888888775443322 1 356777777777776655
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.22 E-value=8.1e-08 Score=83.77 Aligned_cols=93 Identities=19% Similarity=0.094 Sum_probs=45.3
Q ss_pred cccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCC-----CChhhh--ccCCCcEEEE
Q 037465 270 LYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNI-----FPKWLT--SLTNLRNLYL 342 (432)
Q Consensus 270 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~~l~--~l~~L~~L~l 342 (432)
+..+.+|+.|++..|.+. ......+...+...+.|..|.+.+|-... +...+. ..|+|..|..
T Consensus 210 l~y~~~LevLDlqDNtft----------~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~ 279 (388)
T COG5238 210 LFYSHSLEVLDLQDNTFT----------LEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPG 279 (388)
T ss_pred HHHhCcceeeeccccchh----------hhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCcccccc
Confidence 344555556665555411 11222333344444555666665554332 111111 4677777777
Q ss_pred eCCCCCC------CCCCC--CCcc-cceEecccccccccc
Q 037465 343 SSCFNCE------HLPPL--GKLP-LEKLTLYNLKSVKRV 373 (432)
Q Consensus 343 ~~~~~~~------~l~~~--~~l~-L~~L~l~~c~~l~~~ 373 (432)
.+|..-. .++.+ +++| |..|.+.++. ++..
T Consensus 280 ~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr-~~E~ 318 (388)
T COG5238 280 DYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR-IKEL 318 (388)
T ss_pred chhhhcCceeeeechhhhhhcccHHHHHHHHccCc-chhH
Confidence 7764322 12222 4677 7777777666 4433
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.11 E-value=3.3e-07 Score=89.48 Aligned_cols=192 Identities=27% Similarity=0.320 Sum_probs=121.9
Q ss_pred CceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCc
Q 037465 61 GKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE 140 (432)
Q Consensus 61 ~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~ 140 (432)
..+..+.+..+.+..+...+..+++|..|++.+|.+.. +...+..+++|++|++++ +.++.+.
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~-------i~~~l~~~~~L~~L~ls~---------N~I~~i~- 134 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEK-------IENLLSSLVNLQVLDLSF---------NKITKLE- 134 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccchhh-------cccchhhhhcchheeccc---------ccccccc-
Confidence 34555556666666545557788899999999996532 333367799999999999 7788874
Q ss_pred cccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChh-hhcccccceEEcCCCCccccCCccCCccccc
Q 037465 141 NVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAG-IGKLMNMRSLLNDNTRSLKYMPIGISKLTSL 219 (432)
Q Consensus 141 ~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L 219 (432)
.+..+..|+.|++.+|.|..+. .+..++.|+.+++++|. +..+... ...+.+++.+++.+|..... ..+..+..+
T Consensus 135 ~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l 210 (414)
T KOG0531|consen 135 GLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLSYNR-IVDIENDELSELISLEELDLGGNSIREI--EGLDLLKKL 210 (414)
T ss_pred chhhccchhhheeccCcchhcc-CCccchhhhcccCCcch-hhhhhhhhhhhccchHHHhccCCchhcc--cchHHHHHH
Confidence 5677888999999999988775 55668999999999998 5444432 57788899999988844332 223344444
Q ss_pred ccccceEecccccCCCCcCccccccCcc--CCceeeCCCCCCCCchhhhhcccccccCCceEEEeecc
Q 037465 220 RTLGKFVVGGGVDGSSTCRLESLKNLQL--LRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGR 285 (432)
Q Consensus 220 ~~L~l~~~~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 285 (432)
..+++..+.... ...+..+.. |+.+++.+-... . ....+..+..+..+++..+.
T Consensus 211 ~~~~l~~n~i~~-------~~~l~~~~~~~L~~l~l~~n~i~-~----~~~~~~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 211 VLLSLLDNKISK-------LEGLNELVMLHLRELYLSGNRIS-R----SPEGLENLKNLPVLDLSSNR 266 (414)
T ss_pred HHhhccccccee-------ccCcccchhHHHHHHhcccCccc-c----ccccccccccccccchhhcc
Confidence 444444444332 222222222 555555541110 0 00344556666666666555
No 49
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.08 E-value=1.5e-05 Score=75.52 Aligned_cols=61 Identities=25% Similarity=0.329 Sum_probs=27.7
Q ss_pred CccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCC
Q 037465 145 LIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMP 210 (432)
Q Consensus 145 l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p 210 (432)
+.+++.|++++|.++.+| .+ -.+|+.|.+++|..+..+|..+ ..+|+.|++++|..+..+|
T Consensus 51 ~~~l~~L~Is~c~L~sLP-~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 51 ARASGRLYIKDCDIESLP-VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred hcCCCEEEeCCCCCcccC-CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence 344555555555444444 11 1235555555554444444333 1345555555554333333
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.04 E-value=6.2e-06 Score=52.17 Aligned_cols=38 Identities=37% Similarity=0.487 Sum_probs=19.2
Q ss_pred cceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCcccccc
Q 037465 115 CLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRL 161 (432)
Q Consensus 115 ~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l 161 (432)
+|++|++++ +.++++|..+++|++|++|++++|.++.+
T Consensus 2 ~L~~L~l~~---------N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSN---------NQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETS---------SS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccC---------CCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 455555555 44555554455555555555555555444
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.98 E-value=8.7e-06 Score=51.51 Aligned_cols=40 Identities=30% Similarity=0.420 Sum_probs=29.7
Q ss_pred ccccEEEeCCccccccchhhhccCCccEEecccccccccCC
Q 037465 146 IHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELP 186 (432)
Q Consensus 146 ~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp 186 (432)
++|++|++++|.|+.+|+.+++|++|++|++++|. +..++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 46788888888888888778888888888888887 55443
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.93 E-value=3.5e-07 Score=90.03 Aligned_cols=20 Identities=40% Similarity=0.630 Sum_probs=15.6
Q ss_pred CccccccCcccEEEEecCCc
Q 037465 77 PMSFFEFDRLRSLLIYDESL 96 (432)
Q Consensus 77 ~~~~~~~~~L~~L~l~~~~~ 96 (432)
|-.+..++.||.|.+.+|.+
T Consensus 102 pi~ifpF~sLr~LElrg~~L 121 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDL 121 (1096)
T ss_pred CceeccccceeeEEecCcch
Confidence 66777788888888888864
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.92 E-value=5.3e-06 Score=84.98 Aligned_cols=60 Identities=25% Similarity=0.247 Sum_probs=28.9
Q ss_pred cCCccccEEEeCCccccccchhhhccCCccEEecccccccc-cCChhhhcccccceEEcCCC
Q 037465 143 GKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLR-ELPAGIGKLMNMRSLLNDNT 203 (432)
Q Consensus 143 ~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~-~lp~~i~~l~~L~~L~l~~~ 203 (432)
.++++|+.|++++++++.+ ..++.|++|++|.+++=.+.. ..-.++..|++|++||+|..
T Consensus 170 ~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred hccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 3455555555555555555 355555555555554433111 11123445555555555544
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.89 E-value=6.1e-07 Score=70.36 Aligned_cols=110 Identities=18% Similarity=0.182 Sum_probs=66.7
Q ss_pred eEEEEeecCCCCCCCcc---ccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC
Q 037465 63 VRHLGLNFEGGAPLPMS---FFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP 139 (432)
Q Consensus 63 i~~L~l~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp 139 (432)
...++++.+.+-.++.. +....+|+..++++|.+ ... ++.+-..++.++.|++++ +.+.++|
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~f-----k~f-p~kft~kf~t~t~lNl~~---------neisdvP 93 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGF-----KKF-PKKFTIKFPTATTLNLAN---------NEISDVP 93 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchh-----hhC-CHHHhhccchhhhhhcch---------hhhhhch
Confidence 34455555544433333 33444566667777632 222 444445556677777777 6677777
Q ss_pred ccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChh
Q 037465 140 ENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAG 188 (432)
Q Consensus 140 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~ 188 (432)
.++..++.|+.|++++|.+...|..+..|.+|-.|+..++. ...+|.+
T Consensus 94 eE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 94 EELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred HHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCc-cccCcHH
Confidence 77777777777777777777777666667777777776665 5555544
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.81 E-value=6.9e-07 Score=88.04 Aligned_cols=127 Identities=19% Similarity=0.208 Sum_probs=99.7
Q ss_pred cCCceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465 59 FGGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI 138 (432)
Q Consensus 59 ~~~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l 138 (432)
.|..+...++++|.+..+..++.-++.|+.|+++.|++. . .. .+..|++|+.|||++ |.+..+
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~-----~--v~-~Lr~l~~LkhLDlsy---------N~L~~v 224 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFT-----K--VD-NLRRLPKLKHLDLSY---------NCLRHV 224 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhh-----h--hH-HHHhccccccccccc---------chhccc
Confidence 477888889999988877778888899999999999542 2 22 488999999999999 778777
Q ss_pred Ccc-ccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCC--hhhhcccccceEEcCCCCc
Q 037465 139 PEN-VGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELP--AGIGKLMNMRSLLNDNTRS 205 (432)
Q Consensus 139 p~~-~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp--~~i~~l~~L~~L~l~~~~~ 205 (432)
|.- ...++ |+.|++++|.++++- .+.+|.+|+.||+++|- +.... .-++.+..|+.|++.+|+.
T Consensus 225 p~l~~~gc~-L~~L~lrnN~l~tL~-gie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 225 PQLSMVGCK-LQLLNLRNNALTTLR-GIENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cccchhhhh-heeeeecccHHHhhh-hHHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 642 22233 999999999998885 78899999999999986 43221 2356788899999999864
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.80 E-value=1.4e-05 Score=81.89 Aligned_cols=150 Identities=21% Similarity=0.245 Sum_probs=103.6
Q ss_pred CCceEEEEeecCCCCC--CCcccc-ccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccc
Q 037465 60 GGKVRHLGLNFEGGAP--LPMSFF-EFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLIT 136 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~--~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~ 136 (432)
..+++.|++.+...-. .+..++ -+|.|++|.+.+-.+ ...-+.....++++|+.||+|+ +.++
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~-----~~~dF~~lc~sFpNL~sLDIS~---------TnI~ 186 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQF-----DNDDFSQLCASFPNLRSLDISG---------TNIS 186 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCcee-----cchhHHHHhhccCccceeecCC---------CCcc
Confidence 4578888887754322 233333 489999999999743 2222555678999999999999 7788
Q ss_pred ccCccccCCccccEEEeCCccccccc--hhhhccCCccEEecccccccccCChhh-------hcccccceEEcCCCCccc
Q 037465 137 EIPENVGKLIHLKYLNLSGLCIKRLP--ETLCELYNLQKLDIRWCRNLRELPAGI-------GKLMNMRSLLNDNTRSLK 207 (432)
Q Consensus 137 ~lp~~~~~l~~L~~L~L~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~lp~~i-------~~l~~L~~L~l~~~~~~~ 207 (432)
.+ ..++.|++|+.|.+.+-.+..-. ..+..|++|++||++....... +..+ ..+++|+.||.+++....
T Consensus 187 nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~-~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 187 NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDD-TKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccc-hHHHHHHHHhcccCccccEEecCCcchhH
Confidence 88 68999999999999988766422 4788999999999998763322 2111 248899999999875544
Q ss_pred cCCcc-CCcccccccccce
Q 037465 208 YMPIG-ISKLTSLRTLGKF 225 (432)
Q Consensus 208 ~~p~~-l~~l~~L~~L~l~ 225 (432)
.+-.. +...++|+...+.
T Consensus 265 ~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 265 EILEELLNSHPNLQQIAAL 283 (699)
T ss_pred HHHHHHHHhCccHhhhhhh
Confidence 33322 2344455554433
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.72 E-value=4.8e-05 Score=72.18 Aligned_cols=83 Identities=25% Similarity=0.369 Sum_probs=55.8
Q ss_pred ccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCc-cc
Q 037465 80 FFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGL-CI 158 (432)
Q Consensus 80 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~-~l 158 (432)
+..+.+++.|++++|.++. +|. --.+|+.|.+++| ..++.+|..+ ..+|++|.+++| .+
T Consensus 48 ~~~~~~l~~L~Is~c~L~s-------LP~---LP~sLtsL~Lsnc--------~nLtsLP~~L--P~nLe~L~Ls~Cs~L 107 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES-------LPV---LPNELTEITIENC--------NNLTTLPGSI--PEGLEKLTVCHCPEI 107 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc-------cCC---CCCCCcEEEccCC--------CCcccCCchh--hhhhhheEccCcccc
Confidence 3457889999999985432 332 1235999999988 6677777655 368999999998 47
Q ss_pred cccchhhhccCCccEEeccccc--ccccCChh
Q 037465 159 KRLPETLCELYNLQKLDIRWCR--NLRELPAG 188 (432)
Q Consensus 159 ~~lp~~i~~l~~L~~L~l~~~~--~~~~lp~~ 188 (432)
..+|.. |+.|++..+. .+..+|..
T Consensus 108 ~sLP~s------Le~L~L~~n~~~~L~~LPss 133 (426)
T PRK15386 108 SGLPES------VRSLEIKGSATDSIKNVPNG 133 (426)
T ss_pred cccccc------cceEEeCCCCCcccccCcch
Confidence 788754 5556665433 24556554
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=1.7e-05 Score=70.50 Aligned_cols=104 Identities=22% Similarity=0.195 Sum_probs=69.1
Q ss_pred EEEeecCCCCCCC--ccc-cccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCcc
Q 037465 65 HLGLNFEGGAPLP--MSF-FEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPEN 141 (432)
Q Consensus 65 ~L~l~~~~~~~~~--~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~ 141 (432)
-+.+.++.+.... ..| ..++.++.+++.+|.++.++- +...+..+|+|++|+++.|+.- ..++.+|
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWse----I~~ile~lP~l~~LNls~N~L~-----s~I~~lp-- 117 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSE----IGAILEQLPALTTLNLSCNSLS-----SDIKSLP-- 117 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHH----HHHHHhcCccceEeeccCCcCC-----CccccCc--
Confidence 3455555554421 122 358889999999998765332 4455789999999999995321 2244444
Q ss_pred ccCCccccEEEeCCcccc--ccchhhhccCCccEEeccccc
Q 037465 142 VGKLIHLKYLNLSGLCIK--RLPETLCELYNLQKLDIRWCR 180 (432)
Q Consensus 142 ~~~l~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~~ 180 (432)
..+.+|++|-|.++.+. .+...+..+++++.|.++.|.
T Consensus 118 -~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 118 -LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred -ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence 34678999999988854 555566777777777777663
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.65 E-value=7.7e-06 Score=64.30 Aligned_cols=106 Identities=24% Similarity=0.267 Sum_probs=79.3
Q ss_pred CcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCcccc-CCccccEEEeCCccccccc
Q 037465 84 DRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVG-KLIHLKYLNLSGLCIKRLP 162 (432)
Q Consensus 84 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~-~l~~L~~L~L~~~~l~~lp 162 (432)
..+..+++++|.+.. ... ....+....+|...++++ |.++++|..|. +.+.+..|++++|.|..+|
T Consensus 27 kE~h~ldLssc~lm~---i~d-avy~l~~~~el~~i~ls~---------N~fk~fp~kft~kf~t~t~lNl~~neisdvP 93 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMY---IAD-AVYMLSKGYELTKISLSD---------NGFKKFPKKFTIKFPTATTLNLANNEISDVP 93 (177)
T ss_pred HHhhhcccccchhhH---HHH-HHHHHhCCceEEEEeccc---------chhhhCCHHHhhccchhhhhhcchhhhhhch
Confidence 345667777774311 111 122256667788888888 77888887774 4568889999999999999
Q ss_pred hhhhccCCccEEecccccccccCChhhhcccccceEEcCCC
Q 037465 163 ETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNT 203 (432)
Q Consensus 163 ~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~ 203 (432)
..+..++.|+.|+++.|. +...|..+..+.++..|+..++
T Consensus 94 eE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 94 EELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred HHHhhhHHhhhcccccCc-cccchHHHHHHHhHHHhcCCCC
Confidence 888899999999999888 7777888888888888888777
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.47 E-value=9.5e-05 Score=65.02 Aligned_cols=224 Identities=17% Similarity=0.084 Sum_probs=122.1
Q ss_pred ccCCcceEEEeCCCCCCCCCCCCccc-----ccCccccCCccccEEEeCCcccc----c-------cchhhhccCCccEE
Q 037465 111 SKLACLRALVISQSSSFSHPGPNLIT-----EIPENVGKLIHLKYLNLSGLCIK----R-------LPETLCELYNLQKL 174 (432)
Q Consensus 111 ~~l~~L~~L~L~~~~~~~~~~~~~~~-----~lp~~~~~l~~L~~L~L~~~~l~----~-------lp~~i~~l~~L~~L 174 (432)
..+..+..++||+| .++ .+...+.+-.+|+..+++.-... . +.+.+-+|++|++.
T Consensus 27 ~~~d~~~evdLSGN---------tigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v 97 (388)
T COG5238 27 EMMDELVEVDLSGN---------TIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKV 97 (388)
T ss_pred HhhcceeEEeccCC---------cccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceee
Confidence 34555666666663 222 23344455566666666543321 2 22345677888888
Q ss_pred ecccccccccCChh----hhcccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCcCccccccCccCCc
Q 037465 175 DIRWCRNLRELPAG----IGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRE 250 (432)
Q Consensus 175 ~l~~~~~~~~lp~~----i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~ 250 (432)
++++|.+....|.. |++-+.|.+|.+++|..-..--..+++ .|.+|-. .....+-+.|+.
T Consensus 98 ~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~la~--------------nKKaa~kp~Le~ 161 (388)
T COG5238 98 DLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFHLAY--------------NKKAADKPKLEV 161 (388)
T ss_pred eccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHHHHH--------------HhhhccCCCceE
Confidence 88888866666654 456678888888888322111111221 2333211 112223455666
Q ss_pred eeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCC----
Q 037465 251 CGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNI---- 326 (432)
Q Consensus 251 L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~---- 326 (432)
+.+.+..--..........+..-..|+.+.+..|.++..-+ ..-.+-.+.-+.+|+.|++.+|..+.
T Consensus 162 vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv---------~~L~~~gl~y~~~LevLDlqDNtft~~gS~ 232 (388)
T COG5238 162 VICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGV---------TMLAFLGLFYSHSLEVLDLQDNTFTLEGSR 232 (388)
T ss_pred EEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchh---------HHHHHHHHHHhCcceeeeccccchhhhhHH
Confidence 65554211112222233344445789999999888543211 12233345567889999999887654
Q ss_pred -CChhhhccCCCcEEEEeCCCCCCC-CC----CC--CCcc-cceEeccccc
Q 037465 327 -FPKWLTSLTNLRNLYLSSCFNCEH-LP----PL--GKLP-LEKLTLYNLK 368 (432)
Q Consensus 327 -~~~~l~~l~~L~~L~l~~~~~~~~-l~----~~--~~l~-L~~L~l~~c~ 368 (432)
+...+...+.|+.|.+.+|-.... .. .+ ...| |..|-..++.
T Consensus 233 ~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 233 YLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred HHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhh
Confidence 122233557799999999954332 11 11 2256 7777777665
No 61
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.18 E-value=3.4e-05 Score=76.98 Aligned_cols=42 Identities=26% Similarity=0.391 Sum_probs=22.7
Q ss_pred cceEeccccccccccCccccCCCCCCCCCCCCCCCCcceEEEeCCccccccc
Q 037465 359 LEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELSIEGCPLLENRY 410 (432)
Q Consensus 359 L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~cp~L~~~~ 410 (432)
++.|.+..|..++......... .+.+++.+.+.+|+.+....
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~----------~~~~~~~l~~~~~~~~~~~~ 444 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLAD----------SCSNLKDLDLSGCRVITLKS 444 (482)
T ss_pred cceEecccCccccccchHHHhh----------hhhccccCCccCcccccchh
Confidence 4566666665444443322211 14566777777777776554
No 62
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.12 E-value=6.7e-05 Score=74.89 Aligned_cols=113 Identities=19% Similarity=0.107 Sum_probs=62.6
Q ss_pred ccCCccEEeccccccccc--CChhhhcccccceEEcCCC-CccccCC----ccCCcccccccccceEecccccCCCCcCc
Q 037465 167 ELYNLQKLDIRWCRNLRE--LPAGIGKLMNMRSLLNDNT-RSLKYMP----IGISKLTSLRTLGKFVVGGGVDGSSTCRL 239 (432)
Q Consensus 167 ~l~~L~~L~l~~~~~~~~--lp~~i~~l~~L~~L~l~~~-~~~~~~p----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 239 (432)
.++.|+.|.+.+|..+.. +-.....++.|+.|+++++ ......+ .....+.+|+.|++..+.... ...+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is----d~~l 261 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT----DIGL 261 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC----chhH
Confidence 356677777776654443 2233445677777777652 2222111 122345667777776665332 3333
Q ss_pred ccccc-CccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeecc
Q 037465 240 ESLKN-LQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGR 285 (432)
Q Consensus 240 ~~l~~-l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 285 (432)
..+.. +++|+.|.+..|..+++ .........++.|++|++++|.
T Consensus 262 ~~l~~~c~~L~~L~l~~c~~lt~--~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 262 SALASRCPNLETLSLSNCSNLTD--EGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred HHHHhhCCCcceEccCCCCccch--hHHHHHHHhcCcccEEeeecCc
Confidence 33333 66777777666665333 3444555667777777777776
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=4.3e-05 Score=67.37 Aligned_cols=79 Identities=20% Similarity=0.176 Sum_probs=37.3
Q ss_pred CceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC-
Q 037465 61 GKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP- 139 (432)
Q Consensus 61 ~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp- 139 (432)
.++++|.+-++++.++. ...+|+.|++|.|+-|+|+. +.. +..|..|++|+|.. |.+.++.
T Consensus 19 ~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIss-------L~p-l~rCtrLkElYLRk---------N~I~sldE 80 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISS-------LAP-LQRCTRLKELYLRK---------NCIESLDE 80 (388)
T ss_pred HHhhhhcccCCCccHHH-HHHhcccceeEEeecccccc-------chh-HHHHHHHHHHHHHh---------cccccHHH
Confidence 34555555555555421 12445555555555554322 222 45555555555555 3333331
Q ss_pred -ccccCCccccEEEeCCcc
Q 037465 140 -ENVGKLIHLKYLNLSGLC 157 (432)
Q Consensus 140 -~~~~~l~~L~~L~L~~~~ 157 (432)
..+.++++|+.|.|..|.
T Consensus 81 L~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 81 LEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred HHHHhcCchhhhHhhccCC
Confidence 233445555555554444
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.06 E-value=0.00077 Score=56.88 Aligned_cols=107 Identities=24% Similarity=0.177 Sum_probs=62.7
Q ss_pred CCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccccccchhhhc-cCCccEEecccccccccCCh--hh
Q 037465 113 LACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLPETLCE-LYNLQKLDIRWCRNLRELPA--GI 189 (432)
Q Consensus 113 l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~-l~~L~~L~l~~~~~~~~lp~--~i 189 (432)
..+...+||+. +.+..++ .+..++.|.+|.+.+|+|..+.+.+.. +++|..|.+.+|. +.++-+ -+
T Consensus 41 ~d~~d~iDLtd---------Ndl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pL 109 (233)
T KOG1644|consen 41 LDQFDAIDLTD---------NDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPL 109 (233)
T ss_pred ccccceecccc---------cchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchh
Confidence 34455667766 5555553 455667777777777777766555443 3457777777766 433321 24
Q ss_pred hcccccceEEcCCCCccccC---CccCCcccccccccceEeccc
Q 037465 190 GKLMNMRSLLNDNTRSLKYM---PIGISKLTSLRTLGKFVVGGG 230 (432)
Q Consensus 190 ~~l~~L~~L~l~~~~~~~~~---p~~l~~l~~L~~L~l~~~~~~ 230 (432)
..+++|+.|.+-+|+....- --.+..+++|+.||+......
T Consensus 110 a~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ 153 (233)
T KOG1644|consen 110 ASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRK 153 (233)
T ss_pred ccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhHH
Confidence 56677777777666443311 112456777777777665543
No 65
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.02 E-value=0.00057 Score=57.67 Aligned_cols=82 Identities=16% Similarity=0.165 Sum_probs=47.1
Q ss_pred ccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhh-cccccceEEcCCCCccccCC--ccCCcccccccc
Q 037465 146 IHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIG-KLMNMRSLLNDNTRSLKYMP--IGISKLTSLRTL 222 (432)
Q Consensus 146 ~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~-~l~~L~~L~l~~~~~~~~~p--~~l~~l~~L~~L 222 (432)
.....++|+.|.+..++ .+..++.|++|.+..|. +..+-..+. .+++|..|.+.+|.... +. ..+..|+.|++|
T Consensus 42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNsi~~-l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNSIQE-LGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhhcc-cCCCccccceEEecCCc-ceeeccchhhhccccceEEecCcchhh-hhhcchhccCCcccee
Confidence 34556777777766554 55666777777777776 333333343 35567777777763322 21 124456666666
Q ss_pred cceEeccc
Q 037465 223 GKFVVGGG 230 (432)
Q Consensus 223 ~l~~~~~~ 230 (432)
.+.++...
T Consensus 119 tll~Npv~ 126 (233)
T KOG1644|consen 119 TLLGNPVE 126 (233)
T ss_pred eecCCchh
Confidence 66665544
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.00 E-value=4.4e-05 Score=67.29 Aligned_cols=100 Identities=22% Similarity=0.189 Sum_probs=57.7
Q ss_pred CCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCCh--hhh
Q 037465 113 LACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPA--GIG 190 (432)
Q Consensus 113 l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~--~i~ 190 (432)
+.+.+.|+.-+ +.+.++ +...+|+.|++|.|+-|.|+++. .+..+++|+.|.|+.|. +..+-. -+.
T Consensus 18 l~~vkKLNcwg---------~~L~DI-sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLk 85 (388)
T KOG2123|consen 18 LENVKKLNCWG---------CGLDDI-SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLK 85 (388)
T ss_pred HHHhhhhcccC---------CCccHH-HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHh
Confidence 44555566555 345555 23456777777777777777774 56677777777777766 443321 134
Q ss_pred cccccceEEcCCCCccccCCcc-----CCcccccccccc
Q 037465 191 KLMNMRSLLNDNTRSLKYMPIG-----ISKLTSLRTLGK 224 (432)
Q Consensus 191 ~l~~L~~L~l~~~~~~~~~p~~-----l~~l~~L~~L~l 224 (432)
++++|+.|.+..|+..+.-+.. +..+++|++|+-
T Consensus 86 nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 86 NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred cCchhhhHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 5566666666666554433321 334556665553
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.20 E-value=0.0019 Score=56.83 Aligned_cols=84 Identities=25% Similarity=0.181 Sum_probs=43.4
Q ss_pred hccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCcc--cc-ccchhhhccCCccEEeccccccc--cc
Q 037465 110 FSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLC--IK-RLPETLCELYNLQKLDIRWCRNL--RE 184 (432)
Q Consensus 110 ~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~--l~-~lp~~i~~l~~L~~L~l~~~~~~--~~ 184 (432)
.-.+..|+.|.+.+ ..++.+ ..+-.|++|++|.++.|. +. .++....++++|++|++++|++- ..
T Consensus 39 ~d~~~~le~ls~~n---------~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lst 108 (260)
T KOG2739|consen 39 TDEFVELELLSVIN---------VGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLST 108 (260)
T ss_pred cccccchhhhhhhc---------cceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccc
Confidence 34445555555555 223332 233446677777777663 22 44444455577777777766621 12
Q ss_pred CChhhhcccccceEEcCCCC
Q 037465 185 LPAGIGKLMNMRSLLNDNTR 204 (432)
Q Consensus 185 lp~~i~~l~~L~~L~l~~~~ 204 (432)
++ .+..+.+|..|++.+|.
T Consensus 109 l~-pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 109 LR-PLKELENLKSLDLFNCS 127 (260)
T ss_pred cc-hhhhhcchhhhhcccCC
Confidence 21 23455566666666663
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.12 E-value=0.0015 Score=57.44 Aligned_cols=91 Identities=18% Similarity=0.200 Sum_probs=56.4
Q ss_pred cCccccCCccccEEEeCCccccccchhhhccCCccEEecccc--cccccCChhhhcccccceEEcCCCCccc--cCCccC
Q 037465 138 IPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWC--RNLRELPAGIGKLMNMRSLLNDNTRSLK--YMPIGI 213 (432)
Q Consensus 138 lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~--~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~p~~l 213 (432)
+..-.-.+..|+.|++.++.++++. .+..|++|++|.++.| .....++.-...+++|++|++++|++-. .+ ..+
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl-~pl 112 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL-RPL 112 (260)
T ss_pred cccccccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc-chh
Confidence 4333445666777777777766553 5567788999999888 3334444444556888888888884421 11 113
Q ss_pred CcccccccccceEeccc
Q 037465 214 SKLTSLRTLGKFVVGGG 230 (432)
Q Consensus 214 ~~l~~L~~L~l~~~~~~ 230 (432)
..+.+|..|++.+|...
T Consensus 113 ~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVT 129 (260)
T ss_pred hhhcchhhhhcccCCcc
Confidence 45556666666665443
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.68 E-value=0.0066 Score=31.84 Aligned_cols=17 Identities=41% Similarity=0.823 Sum_probs=7.8
Q ss_pred ccEEEeCCccccccchh
Q 037465 148 LKYLNLSGLCIKRLPET 164 (432)
Q Consensus 148 L~~L~L~~~~l~~lp~~ 164 (432)
|++|++++|.++.+|+.
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 44444444444444443
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.48 E-value=0.064 Score=42.69 Aligned_cols=103 Identities=17% Similarity=0.330 Sum_probs=43.8
Q ss_pred cccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC-ccccCCccccEEEeCCcc
Q 037465 79 SFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP-ENVGKLIHLKYLNLSGLC 157 (432)
Q Consensus 79 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp-~~~~~l~~L~~L~L~~~~ 157 (432)
+|.++++|+.+.+... + ..+....|..+++|+.+.+.. + +..++ ..+.+++.|+.+.+.. .
T Consensus 7 ~F~~~~~l~~i~~~~~-~------~~I~~~~F~~~~~l~~i~~~~---------~-~~~i~~~~F~~~~~l~~i~~~~-~ 68 (129)
T PF13306_consen 7 AFYNCSNLESITFPNT-I------KKIGENAFSNCTSLKSINFPN---------N-LTSIGDNAFSNCKSLESITFPN-N 68 (129)
T ss_dssp TTTT-TT--EEEETST---------EE-TTTTTT-TT-SEEEESS---------T-TSCE-TTTTTT-TT-EEEEETS-T
T ss_pred HHhCCCCCCEEEECCC-e------eEeChhhcccccccccccccc---------c-ccccceeeeecccccccccccc-c
Confidence 4566667777766532 1 122333466666777777665 2 44442 2455565677777754 4
Q ss_pred ccccch-hhhccCCccEEecccccccccCChh-hhcccccceEEcCC
Q 037465 158 IKRLPE-TLCELYNLQKLDIRWCRNLRELPAG-IGKLMNMRSLLNDN 202 (432)
Q Consensus 158 l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l~~ 202 (432)
+..++. .+..+++|+.+.+..+ +..++.. +..+ +|+.+.+..
T Consensus 69 ~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 69 LKSIGDNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp T-EE-TTTTTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccccccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 444443 3444666666666542 2233222 3333 566655543
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.43 E-value=0.026 Score=29.52 Aligned_cols=21 Identities=33% Similarity=0.411 Sum_probs=14.3
Q ss_pred cceEEEeCCCCCCCCCCCCcccccCccccC
Q 037465 115 CLRALVISQSSSFSHPGPNLITEIPENVGK 144 (432)
Q Consensus 115 ~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~ 144 (432)
+|++|++++ +.++.+|+.|++
T Consensus 1 ~L~~Ldls~---------n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSG---------NNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETS---------SEESEEGTTTTT
T ss_pred CccEEECCC---------CcCEeCChhhcC
Confidence 467788877 566677766554
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.10 E-value=0.037 Score=26.88 Aligned_cols=13 Identities=31% Similarity=0.388 Sum_probs=4.3
Q ss_pred ccEEEeCCccccc
Q 037465 148 LKYLNLSGLCIKR 160 (432)
Q Consensus 148 L~~L~L~~~~l~~ 160 (432)
|+.|++++|++++
T Consensus 3 L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 3 LRTLDLSNNRLTS 15 (17)
T ss_dssp -SEEEETSS--SS
T ss_pred cCEEECCCCCCCC
Confidence 4444444444433
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.20 E-value=0.51 Score=37.39 Aligned_cols=114 Identities=14% Similarity=0.229 Sum_probs=57.9
Q ss_pred CCceEEEEeecCCCCCC-CccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465 60 GGKVRHLGLNFEGGAPL-PMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI 138 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l 138 (432)
..+++.+.+.. .+..+ ..+|.++++|+.+.+.++ + ..+....|..++.|+.+.+.. .+..+
T Consensus 11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~------~~i~~~~F~~~~~l~~i~~~~----------~~~~i 72 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-L------TSIGDNAFSNCKSLESITFPN----------NLKSI 72 (129)
T ss_dssp -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-T------SCE-TTTTTT-TT-EEEEETS----------TT-EE
T ss_pred CCCCCEEEECC-CeeEeChhhccccccccccccccc-c------cccceeeeecccccccccccc----------ccccc
Confidence 34677777764 44444 446888989999999775 3 222334588898999999975 24444
Q ss_pred C-ccccCCccccEEEeCCccccccch-hhhccCCccEEecccccccccCCh-hhhccccc
Q 037465 139 P-ENVGKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLRELPA-GIGKLMNM 195 (432)
Q Consensus 139 p-~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L 195 (432)
+ ..+..+.+|+.+.+..+ +..++. .+... +|+.+.+..+ ...++. .+.++++|
T Consensus 73 ~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 73 GDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKL 128 (129)
T ss_dssp -TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TTB---SS----GGG-----
T ss_pred ccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECCC--ccEECCccccccccC
Confidence 3 35667899999999765 666654 45555 8888887652 333333 34445454
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.97 E-value=0.034 Score=47.24 Aligned_cols=69 Identities=25% Similarity=0.355 Sum_probs=51.0
Q ss_pred hhhccCCCcEEEEeCCCCCCC--CCCCCC-cc-cceEeccccccccccCccccCCCCCCCCCCCCCCCCcceEEEeCCcc
Q 037465 330 WLTSLTNLRNLYLSSCFNCEH--LPPLGK-LP-LEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELSIEGCPL 405 (432)
Q Consensus 330 ~l~~l~~L~~L~l~~~~~~~~--l~~~~~-l~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~cp~ 405 (432)
-+.+++.++.|.+.+|....+ +..+++ .| |+.|+|++|+.|++-+-..+. .+++|+.|.+.+.|.
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-----------~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-----------KLKNLRRLHLYDLPY 188 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-----------HhhhhHHHHhcCchh
Confidence 344778888888888876663 333443 46 999999999999988766553 488999999998887
Q ss_pred cccc
Q 037465 406 LENR 409 (432)
Q Consensus 406 L~~~ 409 (432)
....
T Consensus 189 v~~~ 192 (221)
T KOG3864|consen 189 VANL 192 (221)
T ss_pred hhch
Confidence 7644
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.94 E-value=0.034 Score=47.23 Aligned_cols=88 Identities=18% Similarity=0.086 Sum_probs=43.9
Q ss_pred CccEEecccccccccCChhhhcccccceEEcCCCCccccCC-ccC-CcccccccccceEecccccCCCCcCccccccCcc
Q 037465 170 NLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMP-IGI-SKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQL 247 (432)
Q Consensus 170 ~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p-~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~ 247 (432)
.++.+|.+++.+..+=-..+..++.++.|.+.+|......- ..+ +-.++|+.|++++|+..+ ......+.++++
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT----~~GL~~L~~lkn 177 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT----DGGLACLLKLKN 177 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec----hhHHHHHHHhhh
Confidence 34555555544222222334445555555555553332111 011 134566666666666554 455566666666
Q ss_pred CCceeeCCCCCCCC
Q 037465 248 LRECGIEGLGNVSH 261 (432)
Q Consensus 248 L~~L~l~~~~~~~~ 261 (432)
|+.|.+.+.+.+..
T Consensus 178 Lr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 178 LRRLHLYDLPYVAN 191 (221)
T ss_pred hHHHHhcCchhhhc
Confidence 66666666555443
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.19 E-value=0.008 Score=52.05 Aligned_cols=86 Identities=20% Similarity=0.138 Sum_probs=54.1
Q ss_pred ccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCcccc
Q 037465 80 FFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIK 159 (432)
Q Consensus 80 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~ 159 (432)
+......+.|+++.|++.+ ...-|+-+..|..|+++. +.+..+|..++.+..++.+.+..|..+
T Consensus 38 i~~~kr~tvld~~s~r~vn-------~~~n~s~~t~~~rl~~sk---------nq~~~~~~d~~q~~e~~~~~~~~n~~~ 101 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVN-------LGKNFSILTRLVRLDLSK---------NQIKFLPKDAKQQRETVNAASHKNNHS 101 (326)
T ss_pred hhccceeeeehhhhhHHHh-------hccchHHHHHHHHHhccH---------hhHhhChhhHHHHHHHHHHHhhccchh
Confidence 3445566667776665321 222244555566667766 666677777776666777776666677
Q ss_pred ccchhhhccCCccEEecccccc
Q 037465 160 RLPETLCELYNLQKLDIRWCRN 181 (432)
Q Consensus 160 ~lp~~i~~l~~L~~L~l~~~~~ 181 (432)
..|.+.++.+++++++..++.+
T Consensus 102 ~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 102 QQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred hCCccccccCCcchhhhccCcc
Confidence 7777777777777777766653
No 77
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=89.91 E-value=0.16 Score=27.68 Aligned_cols=18 Identities=22% Similarity=0.569 Sum_probs=14.6
Q ss_pred CCCcceEEEeCCcccccc
Q 037465 392 SSSSSELSIEGCPLLENR 409 (432)
Q Consensus 392 ~~~L~~L~i~~cp~L~~~ 409 (432)
+++|+.|++++|+.+++.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 468889999999888764
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.49 E-value=0.31 Score=26.47 Aligned_cols=18 Identities=33% Similarity=0.442 Sum_probs=9.1
Q ss_pred ccccEEEeCCccccccch
Q 037465 146 IHLKYLNLSGLCIKRLPE 163 (432)
Q Consensus 146 ~~L~~L~L~~~~l~~lp~ 163 (432)
.+|++|++++|.+..+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 344555555555555544
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.49 E-value=0.31 Score=26.47 Aligned_cols=18 Identities=33% Similarity=0.442 Sum_probs=9.1
Q ss_pred ccccEEEeCCccccccch
Q 037465 146 IHLKYLNLSGLCIKRLPE 163 (432)
Q Consensus 146 ~~L~~L~L~~~~l~~lp~ 163 (432)
.+|++|++++|.+..+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 344555555555555544
No 80
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=87.39 E-value=0.0071 Score=59.64 Aligned_cols=190 Identities=18% Similarity=0.108 Sum_probs=116.3
Q ss_pred ccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccc-----cCccccCC-ccccEEEeCCcccc
Q 037465 86 LRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITE-----IPENVGKL-IHLKYLNLSGLCIK 159 (432)
Q Consensus 86 L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~-----lp~~~~~l-~~L~~L~L~~~~l~ 159 (432)
+..|.+.+|.+.... ...+...+..++.|..|++++| .++. +-..+... ..|++|.+..|.+.
T Consensus 89 l~~L~L~~~~l~~~~--~~~l~~~l~t~~~L~~L~l~~n---------~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~ 157 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRG--AEELAQALKTLPTLGQLDLSGN---------NLGDEGARLLCEGLRLPQCLLQTLELVSCSLT 157 (478)
T ss_pred HHHhhhhhCccccch--HHHHHHHhcccccHhHhhcccC---------CCccHhHHHHHhhcccchHHHHHHHhhccccc
Confidence 677777777653321 1124455677888888888884 3332 22223332 55777888877755
Q ss_pred -----ccchhhhccCCccEEecccccccc----cCChhhh----cccccceEEcCCCCcccc----CCccCCcccc-ccc
Q 037465 160 -----RLPETLCELYNLQKLDIRWCRNLR----ELPAGIG----KLMNMRSLLNDNTRSLKY----MPIGISKLTS-LRT 221 (432)
Q Consensus 160 -----~lp~~i~~l~~L~~L~l~~~~~~~----~lp~~i~----~l~~L~~L~l~~~~~~~~----~p~~l~~l~~-L~~ 221 (432)
.+...+.....++.++++.|.... .++..+. ...++++|++.+|..... +...+...++ +..
T Consensus 158 ~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~e 237 (478)
T KOG4308|consen 158 SEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRE 237 (478)
T ss_pred ccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHH
Confidence 345566667788888888887431 1222333 356788888888854321 1122444555 666
Q ss_pred ccceEecccccCCCCcCccccccC-ccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeecccc
Q 037465 222 LGKFVVGGGVDGSSTCRLESLKNL-QLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVV 287 (432)
Q Consensus 222 L~l~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 287 (432)
|++..+...+. ......+.+..+ ..++.+++..+.............+..++.++.+.++.|.+.
T Consensus 238 l~l~~n~l~d~-g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 238 LDLASNKLGDV-GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHhcCcchH-HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 77777766531 001122334444 566778888877766666777788888889999999988743
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.59 E-value=0.026 Score=48.99 Aligned_cols=90 Identities=18% Similarity=0.108 Sum_probs=73.7
Q ss_pred hhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCC
Q 037465 107 PELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELP 186 (432)
Q Consensus 107 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp 186 (432)
...+.....-++||++. +....+-..++.+..|..|+++.+.+..+|..++....++.+++..|. ....|
T Consensus 35 v~ei~~~kr~tvld~~s---------~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p 104 (326)
T KOG0473|consen 35 VREIASFKRVTVLDLSS---------NRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQP 104 (326)
T ss_pred hhhhhccceeeeehhhh---------hHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCC
Confidence 33466778888999988 666666667777888899999988899999999998889999888776 78888
Q ss_pred hhhhcccccceEEcCCCCcc
Q 037465 187 AGIGKLMNMRSLLNDNTRSL 206 (432)
Q Consensus 187 ~~i~~l~~L~~L~l~~~~~~ 206 (432)
...+..+.++.+++..+...
T Consensus 105 ~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 105 KSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred ccccccCCcchhhhccCcch
Confidence 88888999999888887543
No 82
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=83.85 E-value=0.015 Score=57.44 Aligned_cols=65 Identities=26% Similarity=0.165 Sum_probs=31.5
Q ss_pred cccCCccccEEEeCCccccc-----cchhhhcc-CCccEEecccccccc----cCChhhhcccccceEEcCCCCc
Q 037465 141 NVGKLIHLKYLNLSGLCIKR-----LPETLCEL-YNLQKLDIRWCRNLR----ELPAGIGKLMNMRSLLNDNTRS 205 (432)
Q Consensus 141 ~~~~l~~L~~L~L~~~~l~~-----lp~~i~~l-~~L~~L~l~~~~~~~----~lp~~i~~l~~L~~L~l~~~~~ 205 (432)
.+..++.|..|++++|.+.. +-..+... ..|++|++..|.... .+...+.....++.++++.|..
T Consensus 110 ~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 110 ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGL 184 (478)
T ss_pred HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhccc
Confidence 34556667777777776541 11111111 335555555555222 2233344455566666666644
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=75.24 E-value=1.4 Score=43.40 Aligned_cols=64 Identities=20% Similarity=0.112 Sum_probs=38.1
Q ss_pred CCCCCcEEEEeeeCCCCC---ChhhhccCCCcEEEEeCCCC-CC---CCCCCCCcccceEecccccccccc
Q 037465 310 PPVNVEELWIVYYGGNIF---PKWLTSLTNLRNLYLSSCFN-CE---HLPPLGKLPLEKLTLYNLKSVKRV 373 (432)
Q Consensus 310 ~~~~L~~L~l~~~~~~~~---~~~l~~l~~L~~L~l~~~~~-~~---~l~~~~~l~L~~L~l~~c~~l~~~ 373 (432)
+.+.+..++|++|....+ .......|+|+.|+|++|.. +. .++.++.+||++|.+.+++-.+..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccch
Confidence 345566666665554442 12222678899999988821 22 233345455889999888855544
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=72.15 E-value=2.4 Score=23.12 Aligned_cols=17 Identities=47% Similarity=0.569 Sum_probs=11.1
Q ss_pred cccEEEeCCccccccch
Q 037465 147 HLKYLNLSGLCIKRLPE 163 (432)
Q Consensus 147 ~L~~L~L~~~~l~~lp~ 163 (432)
+|++|+.++|++.++|.
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 46666677776666663
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=64.90 E-value=5.2 Score=21.83 Aligned_cols=15 Identities=40% Similarity=0.414 Sum_probs=8.1
Q ss_pred ccccEEEeCCccccc
Q 037465 146 IHLKYLNLSGLCIKR 160 (432)
Q Consensus 146 ~~L~~L~L~~~~l~~ 160 (432)
.+|+.|++++|.|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 445556666555543
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=64.88 E-value=2 Score=22.66 Aligned_cols=9 Identities=33% Similarity=0.435 Sum_probs=2.8
Q ss_pred ccEEecccc
Q 037465 171 LQKLDIRWC 179 (432)
Q Consensus 171 L~~L~l~~~ 179 (432)
|++|++++|
T Consensus 4 L~~L~l~~n 12 (24)
T PF13516_consen 4 LETLDLSNN 12 (24)
T ss_dssp -SEEE-TSS
T ss_pred CCEEEccCC
Confidence 333444333
No 87
>PF14162 YozD: YozD-like protein
Probab=59.76 E-value=9.4 Score=24.38 Aligned_cols=19 Identities=26% Similarity=0.517 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHHhCCCCcc
Q 037465 2 EMIGEEYFNMLATRSFFQE 20 (432)
Q Consensus 2 e~~~~~~~~~L~~~~li~~ 20 (432)
|++|+=++.+|+.||++-.
T Consensus 11 EEIAefFy~eL~kRGyvP~ 29 (57)
T PF14162_consen 11 EEIAEFFYHELVKRGYVPT 29 (57)
T ss_pred HHHHHHHHHHHHHccCCCc
Confidence 7899999999999999844
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=43.08 E-value=18 Score=19.90 Aligned_cols=12 Identities=33% Similarity=0.379 Sum_probs=6.0
Q ss_pred cccEEEeCCccc
Q 037465 147 HLKYLNLSGLCI 158 (432)
Q Consensus 147 ~L~~L~L~~~~l 158 (432)
+|++|+|++|.+
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 345555555544
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=35.30 E-value=26 Score=35.01 Aligned_cols=63 Identities=14% Similarity=0.092 Sum_probs=28.9
Q ss_pred CccccEEEeCCccccc---cchhhhccCCccEEecccccccccCChhhhc--ccccceEEcCCCCccc
Q 037465 145 LIHLKYLNLSGLCIKR---LPETLCELYNLQKLDIRWCRNLRELPAGIGK--LMNMRSLLNDNTRSLK 207 (432)
Q Consensus 145 l~~L~~L~L~~~~l~~---lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~--l~~L~~L~l~~~~~~~ 207 (432)
.+.+..++|++|++.. +..-....++|.+|+|++|......-.++.+ ...|++|-+.+|+..+
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 3445555566665432 2222334456666666665211111112322 2345566666665443
No 90
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=22.31 E-value=1.5e+02 Score=18.23 Aligned_cols=7 Identities=29% Similarity=0.657 Sum_probs=2.8
Q ss_pred CCcEEEE
Q 037465 336 NLRNLYL 342 (432)
Q Consensus 336 ~L~~L~l 342 (432)
+++.|.+
T Consensus 13 ~l~~L~~ 19 (44)
T PF05725_consen 13 SLKSLIF 19 (44)
T ss_pred CCeEEEE
Confidence 3344444
No 91
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=20.90 E-value=2.1e+02 Score=21.44 Aligned_cols=34 Identities=12% Similarity=0.322 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHhCCCCccccCC----eeecHHHHHHHH
Q 037465 3 MIGEEYFNMLATRSFFQEIEKD----CNMHDIVHDFAQ 36 (432)
Q Consensus 3 ~~~~~~~~~L~~~~li~~~~~~----~~mhdl~~~~~~ 36 (432)
..|..|+++|+++|++...+.+ +.+-+--.++..
T Consensus 46 ~~~~~yi~~L~~~Gli~~~~~~~~~~y~lT~KG~~fle 83 (95)
T COG3432 46 KRAQKYIEMLVEKGLIIKQDNGRRKVYELTEKGKRFLE 83 (95)
T ss_pred HHHHHHHHHHHhCCCEEeccCCccceEEEChhHHHHHH
Confidence 4789999999999987766555 777766555543
Done!