Query 037465
Match_columns 432
No_of_seqs 220 out of 2824
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 21:44:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037465.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037465hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.2E-28 4.2E-33 257.7 15.2 132 270-428 628-766 (768)
2 4fmz_A Internalin; leucine ric 99.9 1.2E-26 4E-31 220.3 22.6 300 60-432 43-343 (347)
3 3v47_A TOLL-like receptor 5B a 99.9 2E-27 6.8E-32 234.0 16.3 303 60-406 29-408 (455)
4 4eco_A Uncharacterized protein 99.9 1E-26 3.5E-31 238.0 14.7 299 60-409 205-581 (636)
5 2id5_A Lingo-1, leucine rich r 99.9 1.4E-25 4.7E-30 222.3 21.8 297 60-406 31-333 (477)
6 3rgz_A Protein brassinosteroid 99.9 3.8E-26 1.3E-30 238.9 18.5 314 60-409 199-554 (768)
7 4eco_A Uncharacterized protein 99.9 4.7E-26 1.6E-30 233.1 15.9 299 60-406 248-600 (636)
8 2id5_A Lingo-1, leucine rich r 99.9 5.9E-26 2E-30 224.9 16.1 292 65-409 15-311 (477)
9 3o6n_A APL1; leucine-rich repe 99.9 4.9E-26 1.7E-30 219.5 14.4 289 60-405 44-351 (390)
10 4ecn_A Leucine-rich repeat pro 99.9 1.1E-25 3.6E-30 235.1 17.9 299 60-410 447-822 (876)
11 2z7x_B TOLL-like receptor 1, v 99.9 4.9E-25 1.7E-29 220.7 21.2 126 60-205 20-150 (520)
12 4fmz_A Internalin; leucine ric 99.9 6E-25 2.1E-29 208.5 20.3 279 59-404 64-344 (347)
13 4ecn_A Leucine-rich repeat pro 99.9 2.4E-25 8.2E-30 232.5 18.3 300 60-407 490-841 (876)
14 3v47_A TOLL-like receptor 5B a 99.9 2.6E-25 9E-30 218.9 17.6 315 65-432 14-405 (455)
15 1ogq_A PGIP-2, polygalacturona 99.9 8.5E-26 2.9E-30 211.1 12.6 250 61-374 50-308 (313)
16 3vq2_A TLR4, TOLL-like recepto 99.9 6.9E-25 2.4E-29 223.7 20.3 272 60-373 31-365 (606)
17 1o6v_A Internalin A; bacterial 99.9 4.2E-24 1.4E-28 210.9 22.7 144 61-229 68-211 (466)
18 1o6v_A Internalin A; bacterial 99.9 3.7E-24 1.3E-28 211.2 22.2 188 60-285 45-232 (466)
19 3t6q_A CD180 antigen; protein- 99.9 1.8E-24 6E-29 220.7 20.2 146 60-220 32-180 (606)
20 3oja_B Anopheles plasmodium-re 99.9 2.8E-25 9.7E-30 225.9 13.9 290 60-406 50-358 (597)
21 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4E-24 1.4E-28 216.0 22.3 126 60-205 51-181 (562)
22 3j0a_A TOLL-like receptor 5; m 99.9 4.6E-24 1.6E-28 225.4 23.5 300 59-403 22-372 (844)
23 3vq2_A TLR4, TOLL-like recepto 99.9 6.2E-25 2.1E-29 224.1 16.2 106 60-180 55-164 (606)
24 3t6q_A CD180 antigen; protein- 99.9 5.5E-25 1.9E-29 224.4 15.7 298 62-407 255-561 (606)
25 2z7x_B TOLL-like receptor 1, v 99.9 2.1E-24 7.1E-29 216.1 19.3 144 64-229 3-150 (520)
26 2z81_A CD282 antigen, TOLL-lik 99.9 7.7E-25 2.6E-29 220.7 16.1 153 60-227 25-182 (549)
27 2ft3_A Biglycan; proteoglycan, 99.9 4.1E-24 1.4E-28 201.5 18.7 284 62-404 34-331 (332)
28 1xku_A Decorin; proteoglycan, 99.9 6.8E-24 2.3E-28 199.8 19.5 262 62-368 32-304 (330)
29 1ziw_A TOLL-like receptor 3; i 99.9 4.4E-24 1.5E-28 220.7 19.9 156 60-230 24-184 (680)
30 3bz5_A Internalin-J, INLJ; leu 99.9 4.1E-24 1.4E-28 209.7 18.0 253 60-375 41-304 (457)
31 3o6n_A APL1; leucine-rich repe 99.9 7.6E-24 2.6E-28 204.2 17.8 289 81-431 42-348 (390)
32 1ogq_A PGIP-2, polygalacturona 99.9 9.9E-25 3.4E-29 203.8 10.0 226 60-350 75-306 (313)
33 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.3E-23 1.1E-27 209.3 21.0 146 62-229 32-181 (562)
34 2z63_A TOLL-like receptor 4, v 99.9 1.7E-23 5.8E-28 211.8 18.5 273 60-373 27-362 (570)
35 2z63_A TOLL-like receptor 4, v 99.9 9E-24 3.1E-28 213.8 16.0 133 60-207 51-191 (570)
36 2z81_A CD282 antigen, TOLL-lik 99.9 8.5E-24 2.9E-28 213.1 15.6 282 66-374 10-377 (549)
37 4fcg_A Uncharacterized protein 99.9 2.5E-23 8.4E-28 195.6 16.0 90 84-189 81-170 (328)
38 3j0a_A TOLL-like receptor 5; m 99.9 1E-22 3.6E-27 215.0 22.1 281 60-374 47-378 (844)
39 1xku_A Decorin; proteoglycan, 99.9 1E-22 3.5E-27 191.7 19.0 292 85-431 32-328 (330)
40 2ft3_A Biglycan; proteoglycan, 99.9 1.1E-22 3.6E-27 191.8 18.5 291 85-431 34-329 (332)
41 4fcg_A Uncharacterized protein 99.9 1.6E-23 5.6E-28 196.8 12.7 218 61-367 81-311 (328)
42 3bz5_A Internalin-J, INLJ; leu 99.9 3.7E-22 1.2E-26 195.9 19.8 267 77-409 35-302 (457)
43 3oja_B Anopheles plasmodium-re 99.9 2.2E-22 7.5E-27 204.6 18.3 261 60-368 74-356 (597)
44 1ziw_A TOLL-like receptor 3; i 99.9 6E-22 2E-26 204.7 21.4 307 62-409 249-599 (680)
45 2z80_A TOLL-like receptor 2, v 99.9 5.4E-22 1.9E-26 188.6 17.4 264 66-368 36-312 (353)
46 2z80_A TOLL-like receptor 2, v 99.9 2.8E-22 9.6E-27 190.6 10.4 260 60-350 51-316 (353)
47 4g8a_A TOLL-like receptor 4; l 99.9 5.5E-21 1.9E-25 195.6 19.9 132 60-206 51-186 (635)
48 2z66_A Variable lymphocyte rec 99.9 1E-21 3.5E-26 182.8 12.1 240 65-368 11-259 (306)
49 2z66_A Variable lymphocyte rec 99.9 4.2E-21 1.4E-25 178.7 13.7 225 114-406 28-261 (306)
50 3zyi_A Leucine-rich repeat-con 99.9 6.6E-21 2.2E-25 187.2 15.7 241 63-346 56-301 (452)
51 3zyj_A Leucine-rich repeat-con 99.8 7.1E-21 2.4E-25 186.3 15.2 241 63-346 45-290 (440)
52 1ozn_A Reticulon 4 receptor; N 99.8 2.3E-21 7.8E-26 178.6 11.0 222 64-349 14-239 (285)
53 3g06_A SSPH2 (leucine-rich rep 99.8 9.7E-20 3.3E-24 184.2 22.7 258 61-407 40-298 (622)
54 3zyi_A Leucine-rich repeat-con 99.8 2.8E-20 9.5E-25 182.8 17.0 221 114-368 75-301 (452)
55 3o53_A Protein LRIM1, AGAP0063 99.8 1.4E-22 4.8E-27 189.7 -0.0 262 63-373 12-278 (317)
56 3zyj_A Leucine-rich repeat-con 99.8 3.7E-20 1.3E-24 181.2 16.9 240 86-368 45-290 (440)
57 1jl5_A Outer protein YOPM; leu 99.8 2.5E-20 8.6E-25 182.7 12.6 143 60-229 10-165 (454)
58 4g8a_A TOLL-like receptor 4; l 99.8 1.4E-19 4.7E-24 185.2 18.6 146 66-229 36-185 (635)
59 1wwl_A Monocyte differentiatio 99.8 1E-21 3.5E-26 183.3 2.5 204 144-368 93-307 (312)
60 1z7x_W Ribonuclease inhibitor; 99.8 3.2E-22 1.1E-26 197.0 -2.2 209 61-285 3-238 (461)
61 3o53_A Protein LRIM1, AGAP0063 99.8 4E-21 1.4E-25 179.8 5.2 250 106-409 26-278 (317)
62 1z7x_W Ribonuclease inhibitor; 99.8 2.1E-22 7.2E-27 198.4 -4.9 235 146-404 142-409 (461)
63 1jl5_A Outer protein YOPM; leu 99.8 3E-19 1E-23 175.0 16.9 291 61-406 111-409 (454)
64 3oja_A Leucine-rich immune mol 99.8 6.8E-21 2.3E-25 188.5 3.5 234 83-365 33-270 (487)
65 1ozn_A Reticulon 4 receptor; N 99.8 3.3E-19 1.1E-23 164.1 13.2 200 113-368 31-236 (285)
66 1wwl_A Monocyte differentiatio 99.8 1.2E-20 4.2E-25 176.0 2.7 247 110-404 39-307 (312)
67 3oja_A Leucine-rich immune mol 99.8 2.9E-19 1E-23 176.7 12.6 216 112-370 32-250 (487)
68 3g06_A SSPH2 (leucine-rich rep 99.8 3.9E-18 1.3E-22 172.5 20.2 254 84-432 40-294 (622)
69 2ca6_A RAN GTPase-activating p 99.8 2.6E-21 8.8E-26 186.2 -4.0 270 63-351 11-319 (386)
70 2ast_B S-phase kinase-associat 99.8 7.8E-20 2.7E-24 172.3 5.4 124 86-227 49-178 (336)
71 3ogk_B Coronatine-insensitive 99.8 4E-20 1.4E-24 187.9 -0.1 61 333-404 461-524 (592)
72 1h6u_A Internalin H; cell adhe 99.7 1.8E-17 6.3E-22 154.1 15.0 102 81-203 38-139 (308)
73 2z62_A TOLL-like receptor 4, v 99.7 1.5E-17 5.1E-22 152.2 13.5 146 67-230 13-162 (276)
74 1h6u_A Internalin H; cell adhe 99.7 4.7E-17 1.6E-21 151.3 16.6 189 60-285 40-228 (308)
75 2o6q_A Variable lymphocyte rec 99.7 2.9E-17 9.9E-22 149.8 14.8 198 62-285 17-216 (270)
76 3ogk_B Coronatine-insensitive 99.7 1.4E-18 4.6E-23 176.6 6.6 129 144-282 190-326 (592)
77 2ca6_A RAN GTPase-activating p 99.7 1.5E-19 5.1E-24 173.9 -0.7 245 106-374 24-319 (386)
78 1p9a_G Platelet glycoprotein I 99.7 2.2E-17 7.6E-22 152.1 13.2 202 79-347 5-207 (290)
79 3rfs_A Internalin B, repeat mo 99.7 1E-17 3.4E-22 153.1 10.4 150 60-228 40-192 (272)
80 2z62_A TOLL-like receptor 4, v 99.7 1.5E-17 5.2E-22 152.2 11.5 129 114-255 28-158 (276)
81 3rfs_A Internalin B, repeat mo 99.7 2.6E-17 8.9E-22 150.3 12.5 220 67-336 25-247 (272)
82 2o6q_A Variable lymphocyte rec 99.7 4.7E-17 1.6E-21 148.4 14.0 123 86-227 18-143 (270)
83 1p9a_G Platelet glycoprotein I 99.7 5.7E-17 1.9E-21 149.3 14.2 197 60-285 9-206 (290)
84 2ast_B S-phase kinase-associat 99.7 2.8E-18 9.5E-23 161.7 5.0 250 62-352 48-310 (336)
85 2p1m_B Transport inhibitor res 99.7 1.8E-18 6.2E-23 175.7 3.6 134 60-201 104-243 (594)
86 2xwt_C Thyrotropin receptor; s 99.7 3.8E-17 1.3E-21 146.2 11.6 198 147-406 32-239 (239)
87 4glp_A Monocyte differentiatio 99.7 3.1E-17 1.1E-21 152.7 10.9 227 84-368 64-305 (310)
88 2xwt_C Thyrotropin receptor; s 99.7 2.5E-16 8.6E-21 140.8 13.6 138 72-228 22-167 (239)
89 2p1m_B Transport inhibitor res 99.7 1.1E-18 3.7E-23 177.4 -2.2 318 60-405 129-518 (594)
90 3goz_A Leucine-rich repeat-con 99.7 1.3E-17 4.5E-22 158.7 4.0 231 67-323 4-264 (362)
91 3goz_A Leucine-rich repeat-con 99.7 3.9E-17 1.3E-21 155.5 5.6 254 89-368 3-295 (362)
92 4glp_A Monocyte differentiatio 99.6 8.8E-16 3E-20 142.9 12.7 155 63-229 93-263 (310)
93 4ay9_X Follicle-stimulating ho 99.6 2E-15 7E-20 142.9 14.7 237 65-367 13-256 (350)
94 4ay9_X Follicle-stimulating ho 99.6 1.4E-15 4.9E-20 144.0 13.6 230 133-402 19-255 (350)
95 3m19_A Variable lymphocyte rec 99.6 2E-15 6.9E-20 136.0 13.7 170 63-255 16-188 (251)
96 4ezg_A Putative uncharacterize 99.6 4.8E-15 1.6E-19 128.3 13.7 150 60-230 43-194 (197)
97 1h6t_A Internalin B; cell adhe 99.6 4.1E-15 1.4E-19 137.0 13.9 170 81-286 43-212 (291)
98 3m19_A Variable lymphocyte rec 99.6 6.6E-15 2.2E-19 132.6 13.1 156 60-231 34-193 (251)
99 1h6t_A Internalin B; cell adhe 99.6 7.1E-15 2.4E-19 135.4 13.5 165 60-255 45-209 (291)
100 4ezg_A Putative uncharacterize 99.6 4.5E-15 1.5E-19 128.5 10.5 132 80-230 40-172 (197)
101 2v70_A SLIT-2, SLIT homolog 2 99.6 1.7E-14 5.8E-19 127.1 12.4 151 65-231 15-167 (220)
102 1m9s_A Internalin B; cell inva 99.6 1.4E-14 4.6E-19 146.4 12.9 166 60-256 42-207 (605)
103 3e6j_A Variable lymphocyte rec 99.6 2.6E-14 8.7E-19 126.8 12.8 148 65-230 23-172 (229)
104 2v9t_B SLIT homolog 2 protein 99.6 1.9E-14 6.6E-19 126.7 11.9 150 65-231 15-166 (220)
105 2o6s_A Variable lymphocyte rec 99.5 2.7E-14 9.2E-19 124.7 10.8 143 67-227 13-158 (208)
106 1m9s_A Internalin B; cell inva 99.5 1.1E-14 3.8E-19 147.0 8.5 189 114-347 21-209 (605)
107 3cvr_A Invasion plasmid antige 99.5 2E-14 6.9E-19 143.6 9.5 39 314-352 209-247 (571)
108 1xeu_A Internalin C; cellular 99.5 1.4E-13 4.8E-18 124.7 13.7 147 60-231 40-186 (263)
109 2o6s_A Variable lymphocyte rec 99.5 7.6E-14 2.6E-18 121.8 11.4 159 60-246 27-189 (208)
110 1xeu_A Internalin C; cellular 99.5 2.5E-14 8.4E-19 129.7 8.4 138 66-228 24-161 (263)
111 3cvr_A Invasion plasmid antige 99.5 1.4E-13 4.8E-18 137.5 13.2 135 61-230 59-193 (571)
112 2ell_A Acidic leucine-rich nuc 99.5 7.5E-14 2.6E-18 117.5 9.1 130 84-230 24-160 (168)
113 2ell_A Acidic leucine-rich nuc 99.5 1.2E-13 4E-18 116.2 10.3 133 60-211 23-164 (168)
114 2je0_A Acidic leucine-rich nuc 99.5 8.5E-14 2.9E-18 114.6 8.0 125 84-225 17-148 (149)
115 1a9n_A U2A', U2A'; complex (nu 99.5 1.9E-13 6.4E-18 116.0 9.9 133 79-230 14-153 (176)
116 4b8c_D Glucose-repressible alc 99.5 1.2E-13 3.9E-18 142.9 10.0 158 60-230 172-329 (727)
117 2xot_A Amphoterin-induced prot 99.4 2.9E-13 1E-17 128.5 11.0 148 65-230 22-176 (361)
118 3e6j_A Variable lymphocyte rec 99.4 7.1E-13 2.4E-17 117.5 12.7 132 60-207 39-173 (229)
119 2je0_A Acidic leucine-rich nuc 99.4 1.5E-13 5.1E-18 113.1 7.0 125 60-202 16-149 (149)
120 4b8c_D Glucose-repressible alc 99.4 4.9E-14 1.7E-18 145.7 4.2 139 74-229 214-353 (727)
121 2v9t_B SLIT homolog 2 protein 99.4 8.4E-13 2.9E-17 116.2 10.8 125 87-230 14-141 (220)
122 2v70_A SLIT-2, SLIT homolog 2 99.4 8.5E-13 2.9E-17 116.2 10.7 134 60-208 31-168 (220)
123 1a9n_A U2A', U2A'; complex (nu 99.4 7.8E-13 2.7E-17 112.1 9.5 127 60-205 18-152 (176)
124 2xot_A Amphoterin-induced prot 99.4 4.6E-13 1.6E-17 127.2 8.6 154 60-230 38-202 (361)
125 1w8a_A SLIT protein; signaling 99.4 1.4E-12 4.9E-17 112.1 10.4 130 64-209 11-142 (192)
126 1ds9_A Outer arm dynein; leuci 99.3 3.7E-14 1.3E-18 122.8 -3.0 127 63-208 25-155 (198)
127 2wfh_A SLIT homolog 2 protein 99.3 1.3E-11 4.3E-16 106.2 12.3 123 65-206 14-139 (193)
128 1w8a_A SLIT protein; signaling 99.3 3.4E-12 1.2E-16 109.7 8.6 126 87-230 11-139 (192)
129 1dce_A Protein (RAB geranylger 99.3 8.4E-12 2.9E-16 125.2 11.0 160 77-252 402-566 (567)
130 1ds9_A Outer arm dynein; leuci 99.3 4.9E-14 1.7E-18 122.0 -5.0 111 107-230 41-153 (198)
131 2o6r_A Variable lymphocyte rec 99.3 2.2E-11 7.6E-16 103.1 11.1 126 64-207 10-138 (177)
132 2wfh_A SLIT homolog 2 protein 99.2 3.3E-11 1.1E-15 103.6 10.8 125 87-230 13-139 (193)
133 1dce_A Protein (RAB geranylger 99.2 2.1E-11 7.1E-16 122.3 10.8 119 85-223 442-566 (567)
134 3sb4_A Hypothetical leucine ri 99.1 4.1E-11 1.4E-15 112.2 6.1 265 83-401 24-305 (329)
135 2o6r_A Variable lymphocyte rec 99.1 2.8E-10 9.6E-15 96.3 10.6 125 86-230 9-137 (177)
136 2r9u_A Variable lymphocyte rec 99.1 1.8E-10 6.1E-15 97.2 9.2 70 133-203 43-115 (174)
137 3sb4_A Hypothetical leucine ri 99.1 1.3E-10 4.6E-15 108.7 9.2 243 112-402 23-283 (329)
138 3g39_A Variable lymphocyte rec 99.0 7.2E-10 2.5E-14 93.1 9.4 98 66-180 14-113 (170)
139 2r9u_A Variable lymphocyte rec 99.0 9.9E-10 3.4E-14 92.6 8.7 103 116-231 14-119 (174)
140 3g39_A Variable lymphocyte rec 99.0 1E-09 3.5E-14 92.1 8.7 101 86-205 11-114 (170)
141 4fdw_A Leucine rich hypothetic 98.9 1.9E-08 6.5E-13 96.4 15.8 262 83-402 112-379 (401)
142 4fdw_A Leucine rich hypothetic 98.9 3.2E-08 1.1E-12 94.8 16.6 220 112-378 111-342 (401)
143 3un9_A NLR family member X1; l 98.7 9.2E-10 3.1E-14 104.5 -0.9 60 145-204 154-222 (372)
144 2ifg_A High affinity nerve gro 98.7 2.8E-08 9.5E-13 93.5 9.2 100 66-181 13-115 (347)
145 2ifg_A High affinity nerve gro 98.7 2.6E-08 8.9E-13 93.7 7.2 102 88-206 12-116 (347)
146 4fs7_A Uncharacterized protein 98.6 6.1E-07 2.1E-11 85.8 16.1 80 308-402 293-375 (394)
147 3un9_A NLR family member X1; l 98.6 4.4E-09 1.5E-13 99.8 -0.6 61 145-205 71-138 (372)
148 4fs7_A Uncharacterized protein 98.5 1.4E-06 4.8E-11 83.3 15.0 89 269-378 248-339 (394)
149 3e4g_A ATP synthase subunit S, 98.5 6.8E-08 2.3E-12 80.3 3.7 87 312-409 61-155 (176)
150 2ra8_A Uncharacterized protein 98.4 2.6E-07 8.8E-12 87.0 7.2 41 114-155 107-148 (362)
151 2ra8_A Uncharacterized protein 98.4 6.4E-08 2.2E-12 91.2 3.0 41 83-123 106-148 (362)
152 4gt6_A Cell surface protein; l 98.3 1.9E-05 6.6E-10 75.3 16.9 106 268-404 259-368 (394)
153 1io0_A Tropomodulin; LRR prote 98.2 6.6E-07 2.3E-11 75.9 4.2 116 78-204 30-162 (185)
154 3e4g_A ATP synthase subunit S, 98.2 4.1E-07 1.4E-11 75.6 1.9 41 218-262 115-155 (176)
155 3rw6_A Nuclear RNA export fact 98.1 1.1E-06 3.8E-11 78.5 3.0 36 145-180 169-207 (267)
156 1io0_A Tropomodulin; LRR prote 98.1 1.7E-06 5.9E-11 73.3 3.8 110 60-180 35-162 (185)
157 4gt6_A Cell surface protein; l 98.0 0.00015 5.1E-09 69.1 15.9 90 306-410 259-363 (394)
158 4h09_A Hypothetical leucine ri 97.9 0.00041 1.4E-08 65.6 16.3 69 307-378 258-329 (379)
159 3rw6_A Nuclear RNA export fact 97.8 4.4E-06 1.5E-10 74.6 1.7 82 111-199 167-257 (267)
160 4h09_A Hypothetical leucine ri 97.8 0.00089 3.1E-08 63.2 16.9 69 307-378 235-306 (379)
161 2a5y_B CED-4; apoptosis; HET: 96.4 0.0013 4.3E-08 65.6 2.8 42 1-43 427-472 (549)
162 1pgv_A TMD-1, tropomodulin TMD 95.8 0.0048 1.6E-07 52.0 3.1 85 83-178 40-135 (197)
163 1pgv_A TMD-1, tropomodulin TMD 95.4 0.014 4.8E-07 49.1 4.6 110 60-180 40-168 (197)
164 3rfe_A Platelet glycoprotein I 95.1 0.032 1.1E-06 43.6 5.5 46 133-180 18-66 (130)
165 3rfe_A Platelet glycoprotein I 93.1 0.15 5.1E-06 39.7 5.5 54 149-205 11-67 (130)
166 3sfz_A APAF-1, apoptotic pepti 89.4 0.27 9.2E-06 53.7 4.7 41 2-42 408-452 (1249)
167 1z6t_A APAF-1, apoptotic prote 75.7 1.9 6.5E-05 42.9 3.9 37 3-39 409-449 (591)
168 1vt4_I APAF-1 related killer D 73.0 2.4 8.2E-05 45.0 3.9 33 3-35 402-436 (1221)
169 2lz0_A Uncharacterized protein 32.1 46 0.0016 24.0 3.7 14 110-123 39-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=1.2e-28 Score=257.73 Aligned_cols=132 Identities=15% Similarity=0.114 Sum_probs=71.0
Q ss_pred cccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCC-CCChhhhccCCCcEEEEeCCCCC
Q 037465 270 LYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGN-IFPKWLTSLTNLRNLYLSSCFNC 348 (432)
Q Consensus 270 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~ 348 (432)
+..+++|+.|++++|. ..+.++..++.++.|+.|++++|... .+|..++.+++|+.|++++|...
T Consensus 628 ~~~l~~L~~LdLs~N~--------------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~ 693 (768)
T 3rgz_A 628 FDNNGSMMFLDMSYNM--------------LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693 (768)
T ss_dssp CSSSBCCCEEECCSSC--------------CBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred hhccccccEEECcCCc--------------ccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCccc
Confidence 3445666666666666 33445555666667777777666665 45666667777777777777665
Q ss_pred CCCC-CCCCcc-cceEeccccccccccCccccCCCCCCCCCCCCCCCCcceEEEeCCcccc----ccccCCCCCCccccc
Q 037465 349 EHLP-PLGKLP-LEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELSIEGCPLLE----NRYREGKGEDWHKIS 422 (432)
Q Consensus 349 ~~l~-~~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~cp~L~----~~~~~~~~~~~~~~~ 422 (432)
+.+| .++.++ |++|++++|+--..+|.. +.|.++....+.|||.|- ..|....+++|++++
T Consensus 694 g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-------------~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~ 760 (768)
T 3rgz_A 694 GRIPQAMSALTMLTEIDLSNNNLSGPIPEM-------------GQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQ 760 (768)
T ss_dssp ECCCGGGGGCCCCSEEECCSSEEEEECCSS-------------SSGGGSCGGGGCSCTEEESTTSCCCCSCC--------
T ss_pred CcCChHHhCCCCCCEEECcCCcccccCCCc-------------hhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCC
Confidence 5555 356666 777777776643444432 124455555556665543 258888999999999
Q ss_pred CCCCcc
Q 037465 423 HIPHIQ 428 (432)
Q Consensus 423 ~~~~~~ 428 (432)
|+|++.
T Consensus 761 ~~~~~~ 766 (768)
T 3rgz_A 761 RSHHHH 766 (768)
T ss_dssp ------
T ss_pred CccccC
Confidence 999864
No 2
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=1.2e-26 Score=220.29 Aligned_cols=300 Identities=19% Similarity=0.166 Sum_probs=238.3
Q ss_pred CCceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC
Q 037465 60 GGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP 139 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp 139 (432)
.++++.+.+.++.+..++. +..+++|++|++++|.++ . ++. +..+++|++|++++ +.++.++
T Consensus 43 l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~-----~--~~~-~~~l~~L~~L~L~~---------n~i~~~~ 104 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQIT-----D--ISP-LSNLVKLTNLYIGT---------NKITDIS 104 (347)
T ss_dssp HTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCC-----C--CGG-GTTCTTCCEEECCS---------SCCCCCG
T ss_pred cccccEEEEeCCccccchh-hhhcCCccEEEccCCccc-----c--chh-hhcCCcCCEEEccC---------CcccCch
Confidence 6789999999999988764 889999999999999543 2 344 88999999999999 6677775
Q ss_pred ccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccccc
Q 037465 140 ENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSL 219 (432)
Q Consensus 140 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L 219 (432)
.+..+++|++|++++|.+..++. +..+++|++|++++|.....++ .+..+++|++|++++|.... .+. +..+++|
T Consensus 105 -~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~-~~~-~~~l~~L 179 (347)
T 4fmz_A 105 -ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD-VTP-IANLTDL 179 (347)
T ss_dssp -GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTC
T ss_pred -HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCC-chh-hccCCCC
Confidence 68999999999999999998886 8999999999999997566554 58899999999999995443 333 7889999
Q ss_pred ccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhh
Q 037465 220 RTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKE 299 (432)
Q Consensus 220 ~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 299 (432)
++|++.++.... ...+..+++|+.+++.++.-. .. ..+..+++|+.|++++|.+.+.
T Consensus 180 ~~L~l~~n~l~~-------~~~~~~l~~L~~L~l~~n~l~-~~-----~~~~~~~~L~~L~l~~n~l~~~---------- 236 (347)
T 4fmz_A 180 YSLSLNYNQIED-------ISPLASLTSLHYFTAYVNQIT-DI-----TPVANMTRLNSLKIGNNKITDL---------- 236 (347)
T ss_dssp SEEECTTSCCCC-------CGGGGGCTTCCEEECCSSCCC-CC-----GGGGGCTTCCEEECCSSCCCCC----------
T ss_pred CEEEccCCcccc-------cccccCCCccceeecccCCCC-CC-----chhhcCCcCCEEEccCCccCCC----------
Confidence 999998876552 233788899999999885432 21 1177889999999999983211
Q ss_pred hhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCCCCCCcc-cceEeccccccccccCcccc
Q 037465 300 KDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTLYNLKSVKRVGNEFL 378 (432)
Q Consensus 300 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~l~-L~~L~l~~c~~l~~~~~~~~ 378 (432)
. .+..+++|++|++++|....+ ..+..+++|+.|++++|. ++.++.++.++ |+.|++++|. ++..+...+
T Consensus 237 -----~-~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l 307 (347)
T 4fmz_A 237 -----S-PLANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQ-ISDISVLNNLSQLNSLFLNNNQ-LGNEDMEVI 307 (347)
T ss_dssp -----G-GGTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSC-CCGGGHHHH
T ss_pred -----c-chhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCc-cCCChhhcCCCCCCEEECcCCc-CCCcChhHh
Confidence 1 277889999999999988775 467799999999999994 55567788899 9999999997 666654433
Q ss_pred CCCCCCCCCCCCCCCCcceEEEeCCccccccccCCCCCCcccccCCCCccCCCC
Q 037465 379 GIEESSEDDPSSSSSSSSELSIEGCPLLENRYREGKGEDWHKISHIPHIQMSPD 432 (432)
Q Consensus 379 ~~~~~~~~~~~~~~~~L~~L~i~~cp~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (432)
+ .+++|+.|++++|+ ++.+.+ +..++++..+.++++
T Consensus 308 ~-----------~l~~L~~L~L~~n~-l~~~~~------~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 308 G-----------GLTNLTTLFLSQNH-ITDIRP------LASLSKMDSADFANQ 343 (347)
T ss_dssp H-----------TCTTCSEEECCSSS-CCCCGG------GGGCTTCSEESSSCC
T ss_pred h-----------ccccCCEEEccCCc-cccccC------hhhhhccceeehhhh
Confidence 3 48899999999997 554443 445666777777654
No 3
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=2e-27 Score=234.04 Aligned_cols=303 Identities=17% Similarity=0.104 Sum_probs=218.2
Q ss_pred CCceEEEEeecCCCCCC-CccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465 60 GGKVRHLGLNFEGGAPL-PMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI 138 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l 138 (432)
.++++.|+++++.+..+ |..|.++++|++|++++|. +.+.+.+..|..+++|++|++++ +.+..+
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-----~~~~i~~~~~~~l~~L~~L~Ls~---------n~l~~~ 94 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQT-----PGLVIRNNTFRGLSSLIILKLDY---------NQFLQL 94 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCS-----TTCEECTTTTTTCTTCCEEECTT---------CTTCEE
T ss_pred CCccCEEEecCCccCcCChhHhccCccccEEECcCCc-----ccceECcccccccccCCEEeCCC---------CccCcc
Confidence 57899999999999885 7789999999999999994 44454566799999999999999 566665
Q ss_pred -CccccCCccccEEEeCCccccc-cchh--hhccCCccEEecccccccccCChh-hhcccccceEEcCCCCccccCCccC
Q 037465 139 -PENVGKLIHLKYLNLSGLCIKR-LPET--LCELYNLQKLDIRWCRNLRELPAG-IGKLMNMRSLLNDNTRSLKYMPIGI 213 (432)
Q Consensus 139 -p~~~~~l~~L~~L~L~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~l 213 (432)
|..++++++|++|++++|.+.. +|.. +..+++|++|++++|......|.. +..+++|++|++++|......+..+
T Consensus 95 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 174 (455)
T 3v47_A 95 ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL 174 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTS
T ss_pred ChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhh
Confidence 7789999999999999999874 4444 889999999999999955555665 7899999999999997766666555
Q ss_pred Ccc----------------------------------cccccccceEecccccCC-------------------------
Q 037465 214 SKL----------------------------------TSLRTLGKFVVGGGVDGS------------------------- 234 (432)
Q Consensus 214 ~~l----------------------------------~~L~~L~l~~~~~~~~~~------------------------- 234 (432)
..+ ++|++|+++++.......
T Consensus 175 ~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 254 (455)
T 3v47_A 175 LNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS 254 (455)
T ss_dssp GGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSC
T ss_pred hccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccc
Confidence 544 445555555543321000
Q ss_pred -------CCcCccccc--cCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhh
Q 037465 235 -------STCRLESLK--NLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLL 305 (432)
Q Consensus 235 -------~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 305 (432)
.......+. ..++|+.++++++. .....+..+..+++|+.|++++|.+ ....+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~----l~~~~~~~~~~l~~L~~L~Ls~n~l--------------~~~~~ 316 (455)
T 3v47_A 255 SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK----IFALLKSVFSHFTDLEQLTLAQNEI--------------NKIDD 316 (455)
T ss_dssp CTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC----CCEECTTTTTTCTTCCEEECTTSCC--------------CEECT
T ss_pred ccchhhhccCcccccccccccCceEEEecCcc----ccccchhhcccCCCCCEEECCCCcc--------------cccCh
Confidence 000000000 11345555555422 1122344567778888888888872 23334
Q ss_pred hcCCCCCCCcEEEEeeeCCCCC-ChhhhccCCCcEEEEeCCCCCCCCC-CCCCcc-cceEeccccccccccCccccCCCC
Q 037465 306 KALQPPVNVEELWIVYYGGNIF-PKWLTSLTNLRNLYLSSCFNCEHLP-PLGKLP-LEKLTLYNLKSVKRVGNEFLGIEE 382 (432)
Q Consensus 306 ~~l~~~~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~l~-~~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~ 382 (432)
..+..+++|++|++++|....+ |..+..+++|+.|++++|......| .++.++ |++|++++|. ++.++...+.
T Consensus 317 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~--- 392 (455)
T 3v47_A 317 NAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFD--- 392 (455)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTT---
T ss_pred hHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc-cccCCHhHhc---
Confidence 5677788999999988877665 5667788999999999996655444 577888 9999999887 7777765443
Q ss_pred CCCCCCCCCCCCcceEEEeCCccc
Q 037465 383 SSEDDPSSSSSSSSELSIEGCPLL 406 (432)
Q Consensus 383 ~~~~~~~~~~~~L~~L~i~~cp~L 406 (432)
.+++|+.|+++++|--
T Consensus 393 --------~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 393 --------RLTSLQKIWLHTNPWD 408 (455)
T ss_dssp --------TCTTCCEEECCSSCBC
T ss_pred --------cCCcccEEEccCCCcc
Confidence 4789999999986543
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=1e-26 Score=237.97 Aligned_cols=299 Identities=12% Similarity=0.101 Sum_probs=191.7
Q ss_pred CCceEEEEeecCCCCC------------------CCcccc--ccCcccEEEEecCCcCccCccCCcchhhhccCCcceEE
Q 037465 60 GGKVRHLGLNFEGGAP------------------LPMSFF--EFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRAL 119 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~------------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L 119 (432)
.++++.|+++++.+.. +|..+. ++++|++|++++| .+.+. +|..+..+++|++|
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n-----~l~~~-~p~~l~~l~~L~~L 278 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC-----PNLTK-LPTFLKALPEMQLI 278 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECC-----TTCSS-CCTTTTTCSSCCEE
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCC-----cCCcc-ChHHHhcCCCCCEE
Confidence 5688999999999888 888888 9999999999999 44555 45668889999999
Q ss_pred EeCCCCCCCCCCCCccc--ccCccccCC------ccccEEEeCCccccccch--hhhccCCccEEecccccccccCChhh
Q 037465 120 VISQSSSFSHPGPNLIT--EIPENVGKL------IHLKYLNLSGLCIKRLPE--TLCELYNLQKLDIRWCRNLRELPAGI 189 (432)
Q Consensus 120 ~L~~~~~~~~~~~~~~~--~lp~~~~~l------~~L~~L~L~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~lp~~i 189 (432)
++++| ..++ .+|..++.+ ++|++|++++|.+..+|. .++.+++|++|++++|...+.+| .+
T Consensus 279 ~Ls~n--------~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~ 349 (636)
T 4eco_A 279 NVACN--------RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AF 349 (636)
T ss_dssp ECTTC--------TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CC
T ss_pred ECcCC--------CCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hh
Confidence 99884 2144 477777665 788888888888888887 78888888888888887444777 77
Q ss_pred hcccccceEEcCCCCccccCCccCCcccc-cccccceEecccccCCCCcCccccccC--ccCCceeeCCCCCCCCch---
Q 037465 190 GKLMNMRSLLNDNTRSLKYMPIGISKLTS-LRTLGKFVVGGGVDGSSTCRLESLKNL--QLLRECGIEGLGNVSHLD--- 263 (432)
Q Consensus 190 ~~l~~L~~L~l~~~~~~~~~p~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~--- 263 (432)
+.+++|+.|++++|... .+|..++.+++ |++|++.++.... .+..+..+ ++|+.|+++++.-....+
T Consensus 350 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~------lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 422 (636)
T 4eco_A 350 GSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKY------IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF 422 (636)
T ss_dssp EEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSS------CCSCCCTTCSSCEEEEECCSSCTTTTTTCSS
T ss_pred CCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcc------cchhhhhcccCccCEEECcCCcCCCcchhhh
Confidence 77788888888887443 77777777777 8888777766542 22222222 245555555432111100
Q ss_pred ------------------------hhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhc--------CCCC
Q 037465 264 ------------------------EAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKA--------LQPP 311 (432)
Q Consensus 264 ------------------------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------l~~~ 311 (432)
......+..+++|+.|++++|.+. .++.. +..+
T Consensus 423 ~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~---------------~i~~~~~~~~~~~~~~l 487 (636)
T 4eco_A 423 DPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT---------------EIPKNSLKDENENFKNT 487 (636)
T ss_dssp CTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS---------------BCCSSSSEETTEECTTG
T ss_pred cccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC---------------CcCHHHhcccccccccc
Confidence 000111223455555555555421 11111 1122
Q ss_pred CCCcEEEEeeeCCCCCChhhh--ccCCCcEEEEeCCCCCCCCC-CCCCcc-cceEecccc------ccccccCccccCCC
Q 037465 312 VNVEELWIVYYGGNIFPKWLT--SLTNLRNLYLSSCFNCEHLP-PLGKLP-LEKLTLYNL------KSVKRVGNEFLGIE 381 (432)
Q Consensus 312 ~~L~~L~l~~~~~~~~~~~l~--~l~~L~~L~l~~~~~~~~l~-~~~~l~-L~~L~l~~c------~~l~~~~~~~~~~~ 381 (432)
++|+.|++++|....+|..+. .+++|+.|++++|.... +| .++.++ |+.|++++| .....+|..+
T Consensus 488 ~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l---- 562 (636)
T 4eco_A 488 YLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI---- 562 (636)
T ss_dssp GGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTG----
T ss_pred CCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHH----
Confidence 267777777776666676665 67777777777775544 44 456667 777777543 2233333322
Q ss_pred CCCCCCCCCCCCCcceEEEeCCcccccc
Q 037465 382 ESSEDDPSSSSSSSSELSIEGCPLLENR 409 (432)
Q Consensus 382 ~~~~~~~~~~~~~L~~L~i~~cp~L~~~ 409 (432)
..+++|++|++++|.- +.+
T Consensus 563 --------~~l~~L~~L~Ls~N~l-~~i 581 (636)
T 4eco_A 563 --------TLCPSLTQLQIGSNDI-RKV 581 (636)
T ss_dssp --------GGCSSCCEEECCSSCC-CBC
T ss_pred --------hcCCCCCEEECCCCcC-Ccc
Confidence 2477888888888765 444
No 5
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=1.4e-25 Score=222.26 Aligned_cols=297 Identities=20% Similarity=0.166 Sum_probs=219.9
Q ss_pred CCceEEEEeecCCCCCC-CccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465 60 GGKVRHLGLNFEGGAPL-PMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI 138 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l 138 (432)
..+++.|++.++.+..+ +..|.++++|++|++++|.+ ... .+..|..+++|++|++++ +.++.+
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i-----~~~-~~~~~~~l~~L~~L~L~~---------n~l~~~ 95 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV-----SAV-EPGAFNNLFNLRTLGLRS---------NRLKLI 95 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC-----CEE-CTTTTTTCTTCCEEECCS---------SCCCSC
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCcc-----CEe-ChhhhhCCccCCEEECCC---------CcCCcc
Confidence 56788888888888875 45788888999999988844 332 455688888999999988 667777
Q ss_pred Cc-cccCCccccEEEeCCcccccc-chhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcc
Q 037465 139 PE-NVGKLIHLKYLNLSGLCIKRL-PETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKL 216 (432)
Q Consensus 139 p~-~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l 216 (432)
|. .+.++++|++|++++|.+..+ |..+..+++|++|++++|......+..+..+++|+.|++++|......+..+..+
T Consensus 96 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 175 (477)
T 2id5_A 96 PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL 175 (477)
T ss_dssp CTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTC
T ss_pred CcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhccc
Confidence 65 467888999999998887765 4577888899999998888545556677888889999998885544333557788
Q ss_pred cccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhh
Q 037465 217 TSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRR 296 (432)
Q Consensus 217 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 296 (432)
++|+.|++.++.... .....+..+++|+.|+++++...... +.......+|+.|++++|.+..
T Consensus 176 ~~L~~L~l~~n~i~~-----~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~n~l~~-------- 238 (477)
T 2id5_A 176 HGLIVLRLRHLNINA-----IRDYSFKRLYRLKVLEISHWPYLDTM----TPNCLYGLNLTSLSITHCNLTA-------- 238 (477)
T ss_dssp TTCCEEEEESCCCCE-----ECTTCSCSCTTCCEEEEECCTTCCEE----CTTTTTTCCCSEEEEESSCCCS--------
T ss_pred CCCcEEeCCCCcCcE-----eChhhcccCcccceeeCCCCcccccc----CcccccCccccEEECcCCcccc--------
Confidence 889988888776652 23446777888888888876554432 2223334589999999887322
Q ss_pred hhhhhHhhhhcCCCCCCCcEEEEeeeCCCCCC-hhhhccCCCcEEEEeCCCCCCCCC-CCCCcc-cceEecccccccccc
Q 037465 297 KKEKDEQLLKALQPPVNVEELWIVYYGGNIFP-KWLTSLTNLRNLYLSSCFNCEHLP-PLGKLP-LEKLTLYNLKSVKRV 373 (432)
Q Consensus 297 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~l~-~~~~l~-L~~L~l~~c~~l~~~ 373 (432)
.....+..+++|+.|++++|....++ ..+..+++|+.|++++|......+ .+..++ |+.|++++|. ++.+
T Consensus 239 ------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~ 311 (477)
T 2id5_A 239 ------VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-LTTL 311 (477)
T ss_dssp ------CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC-CSCC
T ss_pred ------cCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc-Ccee
Confidence 12234677889999999988776654 446688999999999986555434 577888 9999999986 8888
Q ss_pred CccccCCCCCCCCCCCCCCCCcceEEEeCCccc
Q 037465 374 GNEFLGIEESSEDDPSSSSSSSSELSIEGCPLL 406 (432)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~L~~L~i~~cp~L 406 (432)
+...+. .+++|+.|+++++|--
T Consensus 312 ~~~~~~-----------~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 312 EESVFH-----------SVGNLETLILDSNPLA 333 (477)
T ss_dssp CGGGBS-----------CGGGCCEEECCSSCEE
T ss_pred CHhHcC-----------CCcccCEEEccCCCcc
Confidence 766553 3789999999988754
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.94 E-value=3.8e-26 Score=238.85 Aligned_cols=314 Identities=20% Similarity=0.111 Sum_probs=163.6
Q ss_pred CCceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCC-------
Q 037465 60 GGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGP------- 132 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~------- 132 (432)
..+++.|++.++.+...+..+.++++|++|++++|. +++. .+..+..+++|++|++++|........
T Consensus 199 l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~-----l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~ 272 (768)
T 3rgz_A 199 CVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNK-----LSGD-FSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQ 272 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSC-----CCSC-HHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCC
T ss_pred CCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCc-----CCCc-ccHHHhcCCCCCEEECCCCcccCccCccccCCCC
Confidence 567888888888877744458888889999998884 4444 555678888888888888521000000
Q ss_pred ------Cccc-ccCccccCC-ccccEEEeCCcccc-ccchhhhccCCccEEecccccccccCChh-hhcccccceEEcCC
Q 037465 133 ------NLIT-EIPENVGKL-IHLKYLNLSGLCIK-RLPETLCELYNLQKLDIRWCRNLRELPAG-IGKLMNMRSLLNDN 202 (432)
Q Consensus 133 ------~~~~-~lp~~~~~l-~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l~~ 202 (432)
+.+. .+|..+..+ ++|++|++++|.+. .+|..++.+++|++|++++|...+.+|.. +..+++|++|++++
T Consensus 273 ~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~ 352 (768)
T 3rgz_A 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352 (768)
T ss_dssp EEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCS
T ss_pred EEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcC
Confidence 1111 334444332 55555555555544 44455555555555555555533355544 45555555555555
Q ss_pred CCccccCCccCCccc-ccccccceEecccccC--C-------------------CCcCccccccCccCCceeeCCCCCCC
Q 037465 203 TRSLKYMPIGISKLT-SLRTLGKFVVGGGVDG--S-------------------STCRLESLKNLQLLRECGIEGLGNVS 260 (432)
Q Consensus 203 ~~~~~~~p~~l~~l~-~L~~L~l~~~~~~~~~--~-------------------~~~~~~~l~~l~~L~~L~l~~~~~~~ 260 (432)
|...+.+|..+..++ +|+.|++.++...... . ....+..+.++++|+.|+++++.
T Consensus 353 n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~--- 429 (768)
T 3rgz_A 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY--- 429 (768)
T ss_dssp SEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSE---
T ss_pred CccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCc---
Confidence 544444554444444 4555555444332100 0 00112223333344444443321
Q ss_pred CchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCC-CCChhhhccCCCcE
Q 037465 261 HLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGN-IFPKWLTSLTNLRN 339 (432)
Q Consensus 261 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~l~~l~~L~~ 339 (432)
.....+..+..+++|+.|++++|. ..+..+..+..+++|++|++++|... .+|.++..+++|+.
T Consensus 430 -l~~~~p~~l~~l~~L~~L~L~~n~--------------l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 494 (768)
T 3rgz_A 430 -LSGTIPSSLGSLSKLRDLKLWLNM--------------LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 494 (768)
T ss_dssp -EESCCCGGGGGCTTCCEEECCSSC--------------CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred -ccCcccHHHhcCCCCCEEECCCCc--------------ccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCE
Confidence 111122333444444444444444 22233444555566666666665554 34556666666666
Q ss_pred EEEeCCCCCCCCC-CCCCcc-cceEeccccccccccCccccCCCCCCCCCCCCCCCCcceEEEeCCcccccc
Q 037465 340 LYLSSCFNCEHLP-PLGKLP-LEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELSIEGCPLLENR 409 (432)
Q Consensus 340 L~l~~~~~~~~l~-~~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~cp~L~~~ 409 (432)
|++++|...+.+| +++.++ |+.|++++|.-...+|..+. .+++|+.|++++|+-...+
T Consensus 495 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~------------~l~~L~~L~Ls~N~l~g~i 554 (768)
T 3rgz_A 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG------------DCRSLIWLDLNTNLFNGTI 554 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGG------------GCTTCCEEECCSSEEESBC
T ss_pred EEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHc------------CCCCCCEEECCCCccCCcC
Confidence 6666665554444 355566 66666666653334443322 3667777777777654433
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=4.7e-26 Score=233.07 Aligned_cols=299 Identities=14% Similarity=0.185 Sum_probs=218.7
Q ss_pred CCceEEEEeecCCCCC-CCccccccCcccEEEEecCCcCccCccC-CcchhhhccC------CcceEEEeCCCCCCCCCC
Q 037465 60 GGKVRHLGLNFEGGAP-LPMSFFEFDRLRSLLIYDESLSNLSLNG-SILPELFSKL------ACLRALVISQSSSFSHPG 131 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~~l------~~L~~L~L~~~~~~~~~~ 131 (432)
.++++.|.+.++.+.. +|..+.++++|++|++++|+ .+++ . +|..+..+ ++|++|++++
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~----~l~~~~-lp~~~~~L~~~~~l~~L~~L~L~~-------- 314 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR----GISGEQ-LKDDWQALADAPVGEKIQIIYIGY-------- 314 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT----TSCHHH-HHHHHHHHHHSGGGGTCCEEECCS--------
T ss_pred cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC----CCcccc-chHHHHhhhccccCCCCCEEECCC--------
Confidence 6789999999998655 88899999999999999994 1444 3 45556655 8899999988
Q ss_pred CCcccccCc--cccCCccccEEEeCCcccc-ccchhhhccCCccEEecccccccccCChhhhcccc-cceEEcCCCCccc
Q 037465 132 PNLITEIPE--NVGKLIHLKYLNLSGLCIK-RLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMN-MRSLLNDNTRSLK 207 (432)
Q Consensus 132 ~~~~~~lp~--~~~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~-L~~L~l~~~~~~~ 207 (432)
+.++.+|. .++++++|++|++++|.+. .+| .++.+++|++|++++|. +..+|..++.+++ |++|++++|...
T Consensus 315 -n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~- 390 (636)
T 4eco_A 315 -NNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLK- 390 (636)
T ss_dssp -SCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSCCS-
T ss_pred -CcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCcCc-
Confidence 56668887 7888888888888888877 788 78888888888888887 5577877888887 888888888544
Q ss_pred cCCccCCccc--ccccccceEecccccC--CC-----------------------CcCccc-cccCccCCceeeCCCCCC
Q 037465 208 YMPIGISKLT--SLRTLGKFVVGGGVDG--SS-----------------------TCRLES-LKNLQLLRECGIEGLGNV 259 (432)
Q Consensus 208 ~~p~~l~~l~--~L~~L~l~~~~~~~~~--~~-----------------------~~~~~~-l~~l~~L~~L~l~~~~~~ 259 (432)
.+|..++.++ +|+.|++.++...... .. ...+.. +..+++|+.|++++..-.
T Consensus 391 ~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence 6776665543 6777777666543210 00 001111 234566777777664322
Q ss_pred CCchhhhh----cccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCC--CCCCCcEEEEeeeCCCCCChhhhc
Q 037465 260 SHLDEAER----LQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQ--PPVNVEELWIVYYGGNIFPKWLTS 333 (432)
Q Consensus 260 ~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~l~~ 333 (432)
..+.... ..+..+++|+.|++++|.+ . .++..+. .+++|+.|++++|....+|.++..
T Consensus 471 -~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l--------------~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~ 534 (636)
T 4eco_A 471 -EIPKNSLKDENENFKNTYLLTSIDLRFNKL--------------T-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLN 534 (636)
T ss_dssp -BCCSSSSEETTEECTTGGGCCEEECCSSCC--------------C-BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGG
T ss_pred -CcCHHHhccccccccccCCccEEECcCCcC--------------C-ccChhhhhccCCCcCEEECCCCCCCCcChhhhc
Confidence 2111110 1122344999999999983 2 4555665 899999999999999889999999
Q ss_pred cCCCcEEEEeC------CCCCCCCC-CCCCcc-cceEeccccccccccCccccCCCCCCCCCCCCCCCCcceEEEeCCcc
Q 037465 334 LTNLRNLYLSS------CFNCEHLP-PLGKLP-LEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELSIEGCPL 405 (432)
Q Consensus 334 l~~L~~L~l~~------~~~~~~l~-~~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~cp~ 405 (432)
+++|+.|++++ |...+.+| .++.++ |+.|++++|. ++.+|.. .+++|+.|++++||-
T Consensus 535 l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~--------------~~~~L~~L~Ls~N~l 599 (636)
T 4eco_A 535 SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEK--------------ITPNISVLDIKDNPN 599 (636)
T ss_dssp CSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC--------------CCTTCCEEECCSCTT
T ss_pred CCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCccCHh--------------HhCcCCEEECcCCCC
Confidence 99999999954 55566666 578899 9999999998 6888654 357999999999975
Q ss_pred c
Q 037465 406 L 406 (432)
Q Consensus 406 L 406 (432)
.
T Consensus 600 ~ 600 (636)
T 4eco_A 600 I 600 (636)
T ss_dssp C
T ss_pred c
Confidence 4
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=5.9e-26 Score=224.88 Aligned_cols=292 Identities=19% Similarity=0.135 Sum_probs=227.0
Q ss_pred EEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-Ccccc
Q 037465 65 HLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-PENVG 143 (432)
Q Consensus 65 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-p~~~~ 143 (432)
.+...+..+..+|..+. +++++|++++|.+ ... .+..|..+++|++|++++ +.+..+ |..+.
T Consensus 15 ~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l-----~~~-~~~~~~~l~~L~~L~L~~---------n~i~~~~~~~~~ 77 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGIP--TETRLLDLGKNRI-----KTL-NQDEFASFPHLEELELNE---------NIVSAVEPGAFN 77 (477)
T ss_dssp EEECCSCCCSSCCSCCC--TTCSEEECCSSCC-----CEE-CTTTTTTCTTCCEEECTT---------SCCCEECTTTTT
T ss_pred EEEeCCCCcCcCCCCCC--CCCcEEECCCCcc-----ceE-CHhHccCCCCCCEEECCC---------CccCEeChhhhh
Confidence 46667777777887664 6899999999954 332 455689999999999999 667776 77899
Q ss_pred CCccccEEEeCCccccccch-hhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccccc
Q 037465 144 KLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTL 222 (432)
Q Consensus 144 ~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L 222 (432)
++++|++|++++|.+..+|. .+..+++|++|++++|......|..+..+++|+.|++++|......+..+..+++|++|
T Consensus 78 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 157 (477)
T 2id5_A 78 NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQL 157 (477)
T ss_dssp TCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEE
T ss_pred CCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEE
Confidence 99999999999999998886 46889999999999998656667778899999999999997766667788999999999
Q ss_pred cceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhH
Q 037465 223 GKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDE 302 (432)
Q Consensus 223 ~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 302 (432)
++.++... ......+..+++|+.|++.+..- .......+..+++|+.|++++|. ...
T Consensus 158 ~l~~n~l~-----~~~~~~l~~l~~L~~L~l~~n~i----~~~~~~~~~~l~~L~~L~l~~~~--------------~~~ 214 (477)
T 2id5_A 158 TLEKCNLT-----SIPTEALSHLHGLIVLRLRHLNI----NAIRDYSFKRLYRLKVLEISHWP--------------YLD 214 (477)
T ss_dssp EEESCCCS-----SCCHHHHTTCTTCCEEEEESCCC----CEECTTCSCSCTTCCEEEEECCT--------------TCC
T ss_pred ECCCCcCc-----ccChhHhcccCCCcEEeCCCCcC----cEeChhhcccCcccceeeCCCCc--------------ccc
Confidence 99988665 22344578889999999987432 22334567888999999999987 233
Q ss_pred hhhhcCCCCCCCcEEEEeeeCCCCCCh-hhhccCCCcEEEEeCCCCCCCCC-CCCCcc-cceEeccccccccccCccccC
Q 037465 303 QLLKALQPPVNVEELWIVYYGGNIFPK-WLTSLTNLRNLYLSSCFNCEHLP-PLGKLP-LEKLTLYNLKSVKRVGNEFLG 379 (432)
Q Consensus 303 ~~~~~l~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~l~-~~~~l~-L~~L~l~~c~~l~~~~~~~~~ 379 (432)
.++.......+|++|++++|....+|. .+..+++|+.|++++|......+ .+..++ |+.|++++|. ++.++...+.
T Consensus 215 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 293 (477)
T 2id5_A 215 TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPYAFR 293 (477)
T ss_dssp EECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC-CSEECTTTBT
T ss_pred ccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCc-cceECHHHhc
Confidence 344444455689999999998888774 56689999999999996544333 478889 9999999987 7766544332
Q ss_pred CCCCCCCCCCCCCCCcceEEEeCCcccccc
Q 037465 380 IEESSEDDPSSSSSSSSELSIEGCPLLENR 409 (432)
Q Consensus 380 ~~~~~~~~~~~~~~~L~~L~i~~cp~L~~~ 409 (432)
.+++|+.|++++| .++.+
T Consensus 294 -----------~l~~L~~L~L~~N-~l~~~ 311 (477)
T 2id5_A 294 -----------GLNYLRVLNVSGN-QLTTL 311 (477)
T ss_dssp -----------TCTTCCEEECCSS-CCSCC
T ss_pred -----------CcccCCEEECCCC-cCcee
Confidence 4789999999987 34433
No 9
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=4.9e-26 Score=219.54 Aligned_cols=289 Identities=14% Similarity=0.063 Sum_probs=205.9
Q ss_pred CCceEEEEeecCCCCCCCcc-ccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465 60 GGKVRHLGLNFEGGAPLPMS-FFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI 138 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l 138 (432)
..+++.+++.++.+..+|.. +.++++|++|++++|.+ ... .+..+..+++|++|++++ +.++.+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i-----~~~-~~~~~~~l~~L~~L~L~~---------n~l~~~ 108 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI-----EEI-DTYAFAYAHTIQKLYMGF---------NAIRYL 108 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCC-----CEE-CTTTTTTCTTCCEEECCS---------SCCCCC
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcc-----ccc-ChhhccCCCCcCEEECCC---------CCCCcC
Confidence 46888999999988887775 57899999999999954 332 444688999999999999 567776
Q ss_pred -CccccCCccccEEEeCCccccccchh-hhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcc
Q 037465 139 -PENVGKLIHLKYLNLSGLCIKRLPET-LCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKL 216 (432)
Q Consensus 139 -p~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l 216 (432)
|..++.+++|++|++++|.+..+|.. +..+++|++|++++|......|..+..+++|+.|++++|.... ++ ++.+
T Consensus 109 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~--~~~l 185 (390)
T 3o6n_A 109 PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLI 185 (390)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CC--GGGC
T ss_pred CHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-cc--cccc
Confidence 45578899999999999999998876 4889999999999998444445568889999999999985433 32 4556
Q ss_pred cccccccceEecccccCCCCcCccc---------------cccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEE
Q 037465 217 TSLRTLGKFVVGGGVDGSSTCRLES---------------LKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHL 281 (432)
Q Consensus 217 ~~L~~L~l~~~~~~~~~~~~~~~~~---------------l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l 281 (432)
++|+.|++..+..... ..+.. ....++|+.|+++++.-. . ...+..+++|+.|++
T Consensus 186 ~~L~~L~l~~n~l~~~----~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~-~-----~~~l~~l~~L~~L~L 255 (390)
T 3o6n_A 186 PSLFHANVSYNLLSTL----AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLT-D-----TAWLLNYPGLVEVDL 255 (390)
T ss_dssp TTCSEEECCSSCCSEE----ECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCC-C-----CGGGGGCTTCSEEEC
T ss_pred cccceeeccccccccc----CCCCcceEEECCCCeeeeccccccccccEEECCCCCCc-c-----cHHHcCCCCccEEEC
Confidence 6777766665543320 00000 012245666666664322 1 134667788888888
Q ss_pred eeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCCCCCCcc-cc
Q 037465 282 EFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LE 360 (432)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~l~-L~ 360 (432)
++|.+ ....+..+..+++|++|++++|....+|.....+++|+.|++++|......+.++.++ |+
T Consensus 256 s~n~l--------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~ 321 (390)
T 3o6n_A 256 SYNEL--------------EKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLE 321 (390)
T ss_dssp CSSCC--------------CEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCS
T ss_pred CCCcC--------------CCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCC
Confidence 88772 2334456677788888888888777777666678888888888885443333456678 88
Q ss_pred eEeccccccccccCccccCCCCCCCCCCCCCCCCcceEEEeCCcc
Q 037465 361 KLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELSIEGCPL 405 (432)
Q Consensus 361 ~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~cp~ 405 (432)
.|++++|. ++.++. ..+++|+.|+++++|-
T Consensus 322 ~L~L~~N~-i~~~~~--------------~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 322 NLYLDHNS-IVTLKL--------------STHHTLKNLTLSHNDW 351 (390)
T ss_dssp EEECCSSC-CCCCCC--------------CTTCCCSEEECCSSCE
T ss_pred EEECCCCc-cceeCc--------------hhhccCCEEEcCCCCc
Confidence 88888887 666642 2588999999998764
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=1.1e-25 Score=235.15 Aligned_cols=299 Identities=12% Similarity=0.093 Sum_probs=196.6
Q ss_pred CCceEEEEeecCCCCC------------------CCcccc--ccCcccEEEEecCCcCccCccCCcchhhhccCCcceEE
Q 037465 60 GGKVRHLGLNFEGGAP------------------LPMSFF--EFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRAL 119 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~------------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L 119 (432)
.++++.|+++++.+.. +|..+. ++++|++|++++| .+.+. +|..+..+++|++|
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N-----~l~~~-iP~~l~~L~~L~~L 520 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC-----PNMTQ-LPDFLYDLPELQSL 520 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESC-----TTCCS-CCGGGGGCSSCCEE
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCC-----CCCcc-ChHHHhCCCCCCEE
Confidence 5789999999999888 888877 9999999999999 45565 45668999999999
Q ss_pred EeCCCCCCCCCCCCccc--ccCccccCCc-------cccEEEeCCccccccch--hhhccCCccEEecccccccccCChh
Q 037465 120 VISQSSSFSHPGPNLIT--EIPENVGKLI-------HLKYLNLSGLCIKRLPE--TLCELYNLQKLDIRWCRNLRELPAG 188 (432)
Q Consensus 120 ~L~~~~~~~~~~~~~~~--~lp~~~~~l~-------~L~~L~L~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~lp~~ 188 (432)
++++| ..+. .+|..++.++ +|++|++++|.+..+|. .++.+++|++|++++|. +..+| .
T Consensus 521 ~Ls~N--------~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~ 590 (876)
T 4ecn_A 521 NIACN--------RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-A 590 (876)
T ss_dssp ECTTC--------TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-C
T ss_pred ECcCC--------CCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-h
Confidence 99994 2144 4676665554 88999999888888887 78888899999998888 45888 7
Q ss_pred hhcccccceEEcCCCCccccCCccCCcccc-cccccceEecccccCCCCcCccccccCc--cCCceeeCCCCCCCCch--
Q 037465 189 IGKLMNMRSLLNDNTRSLKYMPIGISKLTS-LRTLGKFVVGGGVDGSSTCRLESLKNLQ--LLRECGIEGLGNVSHLD-- 263 (432)
Q Consensus 189 i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~-- 263 (432)
++.+++|+.|++++|... .+|..+..+++ |+.|++.++.... .+..+..+. +|+.|+++++.-....+
T Consensus 591 ~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~------lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l 663 (876)
T 4ecn_A 591 FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY------IPNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663 (876)
T ss_dssp CCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCS------CCSCCCTTCSSCEEEEECCSSCTTTTSSSC
T ss_pred hcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCc------CchhhhccccCCCCEEECcCCcCCCccccc
Confidence 888888888888888655 78888888888 8888888776543 222222222 25555555432211000
Q ss_pred -----------------------hhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcC--------CCCC
Q 037465 264 -----------------------EAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKAL--------QPPV 312 (432)
Q Consensus 264 -----------------------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l--------~~~~ 312 (432)
......+..+++|+.|++++|.+. .++..+ ..++
T Consensus 664 ~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~---------------~ip~~~~~~~~~~l~nl~ 728 (876)
T 4ecn_A 664 SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT---------------SIPENSLKPKDGNYKNTY 728 (876)
T ss_dssp SSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS---------------CCCTTSSSCTTSCCTTGG
T ss_pred hhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC---------------ccChHHhccccccccccC
Confidence 000111224455555665555521 111111 1223
Q ss_pred CCcEEEEeeeCCCCCChhhh--ccCCCcEEEEeCCCCCCCCC-CCCCcc-cceEeccccc------cccccCccccCCCC
Q 037465 313 NVEELWIVYYGGNIFPKWLT--SLTNLRNLYLSSCFNCEHLP-PLGKLP-LEKLTLYNLK------SVKRVGNEFLGIEE 382 (432)
Q Consensus 313 ~L~~L~l~~~~~~~~~~~l~--~l~~L~~L~l~~~~~~~~l~-~~~~l~-L~~L~l~~c~------~l~~~~~~~~~~~~ 382 (432)
+|+.|++++|....+|..+. .+++|+.|++++|.... +| .++.++ |+.|+|++|+ ....+|..+
T Consensus 729 ~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l----- 802 (876)
T 4ecn_A 729 LLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI----- 802 (876)
T ss_dssp GCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTG-----
T ss_pred CccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHH-----
Confidence 67777777776666676665 67777777777775444 44 456667 7777776532 222333222
Q ss_pred CCCCCCCCCCCCcceEEEeCCccccccc
Q 037465 383 SSEDDPSSSSSSSSELSIEGCPLLENRY 410 (432)
Q Consensus 383 ~~~~~~~~~~~~L~~L~i~~cp~L~~~~ 410 (432)
..+++|+.|++++|.- +.+.
T Consensus 803 -------~~L~~L~~L~Ls~N~L-~~Ip 822 (876)
T 4ecn_A 803 -------TTCPSLIQLQIGSNDI-RKVD 822 (876)
T ss_dssp -------GGCSSCCEEECCSSCC-CBCC
T ss_pred -------hcCCCCCEEECCCCCC-CccC
Confidence 2477888888888865 4443
No 11
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=4.9e-25 Score=220.67 Aligned_cols=126 Identities=17% Similarity=0.140 Sum_probs=102.9
Q ss_pred CCceEEEEeecCCCCCCC-ccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465 60 GGKVRHLGLNFEGGAPLP-MSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI 138 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l 138 (432)
.++++.|+++++.+..++ ..|.++++|++|++++|++ ++. .+..|..+++|++|++++ +.++.+
T Consensus 20 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l-----~~~-~~~~~~~l~~L~~L~Ls~---------N~l~~l 84 (520)
T 2z7x_B 20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRI-----QYL-DISVFKFNQELEYLDLSH---------NKLVKI 84 (520)
T ss_dssp CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCC-----CEE-EGGGGTTCTTCCEEECCS---------SCCCEE
T ss_pred cccccEEECCCCcccccChhhccccccccEEecCCCcc-----CCc-ChHHhhcccCCCEEecCC---------Cceeec
Confidence 478999999999998865 5789999999999999954 333 566789999999999999 678888
Q ss_pred CccccCCccccEEEeCCccccc--cchhhhccCCccEEecccccccccCChhhhccccc--ceEEcCCCCc
Q 037465 139 PENVGKLIHLKYLNLSGLCIKR--LPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNM--RSLLNDNTRS 205 (432)
Q Consensus 139 p~~~~~l~~L~~L~L~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L--~~L~l~~~~~ 205 (432)
|.. .+++|++|++++|.+.. +|..++.+++|++|++++|.... ..+..+++| +.|++++|..
T Consensus 85 p~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 85 SCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp ECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred Ccc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccc
Confidence 876 79999999999999875 56889999999999999987333 346667777 8888877755
No 12
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=6e-25 Score=208.48 Aligned_cols=279 Identities=19% Similarity=0.216 Sum_probs=225.1
Q ss_pred cCCceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465 59 FGGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI 138 (432)
Q Consensus 59 ~~~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l 138 (432)
..++++.|++.++.+..++. +.++++|++|++++|.++. ++. +..+++|++|++++ +.+..+
T Consensus 64 ~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~-------~~~-~~~l~~L~~L~l~~---------n~i~~~ 125 (347)
T 4fmz_A 64 YLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITD-------ISA-LQNLTNLRELYLNE---------DNISDI 125 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-------CGG-GTTCTTCSEEECTT---------SCCCCC
T ss_pred hcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccC-------chH-HcCCCcCCEEECcC---------CcccCc
Confidence 36789999999999998776 8999999999999996532 343 89999999999999 677777
Q ss_pred CccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccc
Q 037465 139 PENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTS 218 (432)
Q Consensus 139 p~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ 218 (432)
+. +..+++|++|++++|.....+..+..+++|++|++++|. +..++. +..+++|+.|++++|.. ..++. +..+++
T Consensus 126 ~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~l~~n~l-~~~~~-~~~l~~ 200 (347)
T 4fmz_A 126 SP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNYNQI-EDISP-LASLTS 200 (347)
T ss_dssp GG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECTTSCC-CCCGG-GGGCTT
T ss_pred hh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh-hccCCCCCEEEccCCcc-ccccc-ccCCCc
Confidence 65 889999999999999744334468999999999999998 655554 88999999999999954 44444 778999
Q ss_pred cccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhh
Q 037465 219 LRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKK 298 (432)
Q Consensus 219 L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 298 (432)
|+.|++.++.... ...+..+++|+.|+++++.-.. .. .+..+++|++|++++|.+.+
T Consensus 201 L~~L~l~~n~l~~-------~~~~~~~~~L~~L~l~~n~l~~-~~-----~~~~l~~L~~L~l~~n~l~~---------- 257 (347)
T 4fmz_A 201 LHYFTAYVNQITD-------ITPVANMTRLNSLKIGNNKITD-LS-----PLANLSQLTWLEIGTNQISD---------- 257 (347)
T ss_dssp CCEEECCSSCCCC-------CGGGGGCTTCCEEECCSSCCCC-CG-----GGTTCTTCCEEECCSSCCCC----------
T ss_pred cceeecccCCCCC-------CchhhcCCcCCEEEccCCccCC-Cc-----chhcCCCCCEEECCCCccCC----------
Confidence 9999998876553 2237889999999999864322 11 17889999999999998321
Q ss_pred hhhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCC-CCCCcc-cceEeccccccccccCcc
Q 037465 299 EKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLP-PLGKLP-LEKLTLYNLKSVKRVGNE 376 (432)
Q Consensus 299 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~-~~~~l~-L~~L~l~~c~~l~~~~~~ 376 (432)
...+..+++|++|++++|....+ .++..+++|+.|++++|......+ .++.++ |+.|++++|+ ++.++.
T Consensus 258 ------~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~- 328 (347)
T 4fmz_A 258 ------INAVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP- 328 (347)
T ss_dssp ------CGGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG-
T ss_pred ------ChhHhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccC-
Confidence 24577889999999999988875 467899999999999997655444 467899 9999999998 776654
Q ss_pred ccCCCCCCCCCCCCCCCCcceEEEeCCc
Q 037465 377 FLGIEESSEDDPSSSSSSSSELSIEGCP 404 (432)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~L~~L~i~~cp 404 (432)
. ..+++|++|++++|+
T Consensus 329 -~-----------~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 329 -L-----------ASLSKMDSADFANQV 344 (347)
T ss_dssp -G-----------GGCTTCSEESSSCC-
T ss_pred -h-----------hhhhccceeehhhhc
Confidence 1 248999999999986
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=2.4e-25 Score=232.47 Aligned_cols=300 Identities=15% Similarity=0.192 Sum_probs=227.9
Q ss_pred CCceEEEEeecCCCCC-CCccccccCcccEEEEecCCcCccCccC-CcchhhhccCC-------cceEEEeCCCCCCCCC
Q 037465 60 GGKVRHLGLNFEGGAP-LPMSFFEFDRLRSLLIYDESLSNLSLNG-SILPELFSKLA-------CLRALVISQSSSFSHP 130 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~~l~-------~L~~L~L~~~~~~~~~ 130 (432)
.++++.|.+.++.+.. +|..+.++++|++|++++|+ .+++ . +|..+..++ +|++|++++
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~----~lsg~~-iP~~i~~L~~~~~~l~~L~~L~Ls~------- 557 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR----GISAAQ-LKADWTRLADDEDTGPKIQIFYMGY------- 557 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT----TSCHHH-HHHHHHHHHHCTTTTTTCCEEECCS-------
T ss_pred CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC----Cccccc-chHHHHhhhhcccccCCccEEEeeC-------
Confidence 6789999999987555 89899999999999999994 1444 3 454455554 999999999
Q ss_pred CCCcccccCc--cccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccc-cceEEcCCCCccc
Q 037465 131 GPNLITEIPE--NVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMN-MRSLLNDNTRSLK 207 (432)
Q Consensus 131 ~~~~~~~lp~--~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~-L~~L~l~~~~~~~ 207 (432)
+.+..+|. .++++++|++|++++|.+..+| .++.+++|+.|++++|. +..+|..+..+++ |+.|++++|...
T Consensus 558 --N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~L~- 632 (876)
T 4ecn_A 558 --NNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNKLK- 632 (876)
T ss_dssp --SCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSCCC-
T ss_pred --CcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCCCCC-
Confidence 66778888 8999999999999999988888 88999999999999998 5588888889988 999999999644
Q ss_pred cCCccCCcccc--cccccceEecccccC-CC----------------------CcCccc-cccCccCCceeeCCCCCCCC
Q 037465 208 YMPIGISKLTS--LRTLGKFVVGGGVDG-SS----------------------TCRLES-LKNLQLLRECGIEGLGNVSH 261 (432)
Q Consensus 208 ~~p~~l~~l~~--L~~L~l~~~~~~~~~-~~----------------------~~~~~~-l~~l~~L~~L~l~~~~~~~~ 261 (432)
.+|..+..++. |+.|++.++...... .. ...+.. +..+++|+.|+++++.- ..
T Consensus 633 ~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L-~~ 711 (876)
T 4ecn_A 633 YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM-TS 711 (876)
T ss_dssp SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCC-SC
T ss_pred cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcC-Cc
Confidence 77776665543 778877777653210 00 001111 23567788888876432 22
Q ss_pred chhhhhc----ccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCC--CCCCCcEEEEeeeCCCCCChhhhccC
Q 037465 262 LDEAERL----QLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQ--PPVNVEELWIVYYGGNIFPKWLTSLT 335 (432)
Q Consensus 262 ~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~l~~l~ 335 (432)
.+..... .++.+++|+.|++++|.+. .++..+. .+++|+.|++++|....+|..+..++
T Consensus 712 ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~---------------~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~ 776 (876)
T 4ecn_A 712 IPENSLKPKDGNYKNTYLLTTIDLRFNKLT---------------SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSS 776 (876)
T ss_dssp CCTTSSSCTTSCCTTGGGCCEEECCSSCCC---------------CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCT
T ss_pred cChHHhccccccccccCCccEEECCCCCCc---------------cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCC
Confidence 2211111 1334569999999999832 4555665 88999999999999988999999999
Q ss_pred CCcEEEEeC------CCCCCCCC-CCCCcc-cceEeccccccccccCccccCCCCCCCCCCCCCCCCcceEEEeCCcccc
Q 037465 336 NLRNLYLSS------CFNCEHLP-PLGKLP-LEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELSIEGCPLLE 407 (432)
Q Consensus 336 ~L~~L~l~~------~~~~~~l~-~~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~cp~L~ 407 (432)
+|+.|++++ |...+.+| .++.++ |+.|+|++|. ++.+|.. .+++|+.|++++||-..
T Consensus 777 ~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~--------------l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 777 QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEK--------------LTPQLYILDIADNPNIS 841 (876)
T ss_dssp TCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC--------------CCSSSCEEECCSCTTCE
T ss_pred CCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-CCccCHh--------------hcCCCCEEECCCCCCCc
Confidence 999999987 55566666 578899 9999999998 6888664 35799999999998543
No 14
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=2.6e-25 Score=218.85 Aligned_cols=315 Identities=17% Similarity=0.112 Sum_probs=209.7
Q ss_pred EEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-Ccccc
Q 037465 65 HLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-PENVG 143 (432)
Q Consensus 65 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-p~~~~ 143 (432)
.+...+.++..+|. + .++|++|++++|.+ .+. .+..+..+++|++|++++| .....+ +..+.
T Consensus 14 ~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i-----~~~-~~~~~~~l~~L~~L~L~~n--------~~~~~i~~~~~~ 76 (455)
T 3v47_A 14 NAICINRGLHQVPE-L--PAHVNYVDLSLNSI-----AEL-NETSFSRLQDLQFLKVEQQ--------TPGLVIRNNTFR 76 (455)
T ss_dssp EEECCSSCCSSCCC-C--CTTCCEEECCSSCC-----CEE-CTTTTSSCTTCCEEECCCC--------STTCEECTTTTT
T ss_pred ccCcCCCCcccCCC-C--CCccCEEEecCCcc-----CcC-ChhHhccCccccEEECcCC--------cccceECccccc
Confidence 35666777777777 3 37899999999954 333 4666999999999999994 223355 56789
Q ss_pred CCccccEEEeCCcccccc-chhhhccCCccEEecccccccccCChh--hhcccccceEEcCCCCccccCCcc-CCccccc
Q 037465 144 KLIHLKYLNLSGLCIKRL-PETLCELYNLQKLDIRWCRNLRELPAG--IGKLMNMRSLLNDNTRSLKYMPIG-ISKLTSL 219 (432)
Q Consensus 144 ~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~--i~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L 219 (432)
.+++|++|++++|.+..+ |..++.+++|++|++++|...+..|.. +..+++|++|++++|......|.. ++.+++|
T Consensus 77 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 156 (455)
T 3v47_A 77 GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRF 156 (455)
T ss_dssp TCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTC
T ss_pred ccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcc
Confidence 999999999999998866 678999999999999999855545544 888999999999999776666765 7899999
Q ss_pred ccccceEecccccCCCCcCccccc----------------------------------cCccCCceeeCCCCCCCCchhh
Q 037465 220 RTLGKFVVGGGVDGSSTCRLESLK----------------------------------NLQLLRECGIEGLGNVSHLDEA 265 (432)
Q Consensus 220 ~~L~l~~~~~~~~~~~~~~~~~l~----------------------------------~l~~L~~L~l~~~~~~~~~~~~ 265 (432)
++|++.++..... .+..+. .+++|+.|+++++.-....+..
T Consensus 157 ~~L~L~~n~l~~~-----~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 231 (455)
T 3v47_A 157 HVLDLTFNKVKSI-----CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR 231 (455)
T ss_dssp CEEECTTCCBSCC-----CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHH
T ss_pred cEEeCCCCccccc-----ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhh
Confidence 9999998876531 122222 2245555555553221100000
Q ss_pred hhc---------------------------------ccc--cccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCC
Q 037465 266 ERL---------------------------------QLY--NQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQP 310 (432)
Q Consensus 266 ~~~---------------------------------~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 310 (432)
... .+. ..++|+.|++++|. .....+..+..
T Consensus 232 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~--------------l~~~~~~~~~~ 297 (455)
T 3v47_A 232 FFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK--------------IFALLKSVFSH 297 (455)
T ss_dssp HHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC--------------CCEECTTTTTT
T ss_pred hhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcc--------------ccccchhhccc
Confidence 000 000 11455666666555 22333455667
Q ss_pred CCCCcEEEEeeeCCCCC-ChhhhccCCCcEEEEeCCCCCCCCC-CCCCcc-cceEeccccccccccCccccCCCCCCCCC
Q 037465 311 PVNVEELWIVYYGGNIF-PKWLTSLTNLRNLYLSSCFNCEHLP-PLGKLP-LEKLTLYNLKSVKRVGNEFLGIEESSEDD 387 (432)
Q Consensus 311 ~~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~l~-~~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 387 (432)
+++|++|++++|....+ |.++..+++|+.|++++|......+ .++.++ |++|++++|. ++.++...+
T Consensus 298 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~--------- 367 (455)
T 3v47_A 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH-IRALGDQSF--------- 367 (455)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSC-CCEECTTTT---------
T ss_pred CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCc-ccccChhhc---------
Confidence 77888888877776654 4566678888888888885544333 356777 8888888876 565543332
Q ss_pred CCCCCCCcceEEEeCCccccccccCCCCCCcccccCCCCccCCCC
Q 037465 388 PSSSSSSSSELSIEGCPLLENRYREGKGEDWHKISHIPHIQMSPD 432 (432)
Q Consensus 388 ~~~~~~~L~~L~i~~cp~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (432)
..+++|++|++++|. ++.+.. ..+..++++..+.++++
T Consensus 368 --~~l~~L~~L~L~~N~-l~~~~~----~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 368 --LGLPNLKELALDTNQ-LKSVPD----GIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp --TTCTTCCEEECCSSC-CSCCCT----TTTTTCTTCCEEECCSS
T ss_pred --cccccccEEECCCCc-cccCCH----hHhccCCcccEEEccCC
Confidence 247889999998874 443322 12344455555655543
No 15
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=8.5e-26 Score=211.07 Aligned_cols=250 Identities=21% Similarity=0.202 Sum_probs=156.1
Q ss_pred CceEEEEeecCCCCC---CCccccccCcccEEEEec-CCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccc
Q 037465 61 GKVRHLGLNFEGGAP---LPMSFFEFDRLRSLLIYD-ESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLIT 136 (432)
Q Consensus 61 ~~i~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~ 136 (432)
.+++.|++.++.+.. +|..+.++++|++|++++ | .+.+. ++..+..+++|++|++++ +.+.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n-----~l~~~-~p~~l~~l~~L~~L~Ls~---------n~l~ 114 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN-----NLVGP-IPPAIAKLTQLHYLYITH---------TNVS 114 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEET-----TEESC-CCGGGGGCTTCSEEEEEE---------ECCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCC-----ccccc-CChhHhcCCCCCEEECcC---------CeeC
Confidence 456666666666553 556666666666666663 4 33333 333466666666666666 3343
Q ss_pred -ccCccccCCccccEEEeCCcccc-ccchhhhccCCccEEecccccccccCChhhhccc-ccceEEcCCCCccccCCccC
Q 037465 137 -EIPENVGKLIHLKYLNLSGLCIK-RLPETLCELYNLQKLDIRWCRNLRELPAGIGKLM-NMRSLLNDNTRSLKYMPIGI 213 (432)
Q Consensus 137 -~lp~~~~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~-~L~~L~l~~~~~~~~~p~~l 213 (432)
.+|..+.++++|++|++++|.+. .+|..+..+++|++|++++|...+.+|..++.++ +|+.|++++|...+..|..+
T Consensus 115 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~ 194 (313)
T 1ogq_A 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194 (313)
T ss_dssp EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG
T ss_pred CcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH
Confidence 45556666666666666666655 5555666666666666666664445666666665 66666666665544555555
Q ss_pred CcccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHH
Q 037465 214 SKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEE 293 (432)
Q Consensus 214 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 293 (432)
+.++ |+.|++.++.... ..+..+..+++|+.|++++|.+
T Consensus 195 ~~l~-L~~L~Ls~N~l~~---------------------------------~~~~~~~~l~~L~~L~L~~N~l------- 233 (313)
T 1ogq_A 195 ANLN-LAFVDLSRNMLEG---------------------------------DASVLFGSDKNTQKIHLAKNSL------- 233 (313)
T ss_dssp GGCC-CSEEECCSSEEEE---------------------------------CCGGGCCTTSCCSEEECCSSEE-------
T ss_pred hCCc-ccEEECcCCcccC---------------------------------cCCHHHhcCCCCCEEECCCCce-------
Confidence 5554 5555555444331 1223344556666666666652
Q ss_pred HhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCC-CCChhhhccCCCcEEEEeCCCCCCCCCCCCCcc-cceEecccccccc
Q 037465 294 RRRKKEKDEQLLKALQPPVNVEELWIVYYGGN-IFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTLYNLKSVK 371 (432)
Q Consensus 294 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~l~-L~~L~l~~c~~l~ 371 (432)
.. ....+..+++|++|++++|... .+|.++..+++|+.|++++|...+.+|..+.++ |+.|++.+++.+.
T Consensus 234 -------~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 234 -------AF-DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp -------CC-BGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred -------ee-ecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCcc
Confidence 11 1122556677888888777776 568888899999999999998777888878889 9999999988666
Q ss_pred ccC
Q 037465 372 RVG 374 (432)
Q Consensus 372 ~~~ 374 (432)
..|
T Consensus 306 ~~p 308 (313)
T 1ogq_A 306 GSP 308 (313)
T ss_dssp STT
T ss_pred CCC
Confidence 543
No 16
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=6.9e-25 Score=223.73 Aligned_cols=272 Identities=18% Similarity=0.125 Sum_probs=187.7
Q ss_pred CCceEEEEeecCCCCCCCc-cccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465 60 GGKVRHLGLNFEGGAPLPM-SFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI 138 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l 138 (432)
.++++.|+++++.+..++. .|.++++|++|++++|.+ +.. .+..|..+++|++|++++ +.+..+
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-----~~i-~~~~~~~l~~L~~L~Ls~---------n~l~~~ 95 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI-----ETI-EDKAWHGLHHLSNLILTG---------NPIQSF 95 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC-----CEE-CTTTTTTCTTCCEEECTT---------CCCCCC
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcc-----ccc-CHHHhhchhhcCEeECCC---------Cccccc
Confidence 5789999999999888554 788999999999999954 332 456689999999999999 567776
Q ss_pred -CccccCCccccEEEeCCccccccc-hhhhccCCccEEecccccccc-cCChhhhcccccceEEcCCCCccccCCccCCc
Q 037465 139 -PENVGKLIHLKYLNLSGLCIKRLP-ETLCELYNLQKLDIRWCRNLR-ELPAGIGKLMNMRSLLNDNTRSLKYMPIGISK 215 (432)
Q Consensus 139 -p~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~ 215 (432)
|..++++++|++|++++|.+..++ ..++.+++|++|++++|.... .+|..++.+++|++|++++|......|..++.
T Consensus 96 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 175 (606)
T 3vq2_A 96 SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175 (606)
T ss_dssp CTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHH
T ss_pred ChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhh
Confidence 788999999999999999988776 578999999999999998443 57888999999999999999666555566666
Q ss_pred ccccc----cccceEecccccCCCCcCccccccCccCCceeeCCCCCC--------------------------------
Q 037465 216 LTSLR----TLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNV-------------------------------- 259 (432)
Q Consensus 216 l~~L~----~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-------------------------------- 259 (432)
+++|+ .|++..+.... .........+|+.+++++....
T Consensus 176 l~~L~~~l~~L~l~~n~l~~------~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~ 249 (606)
T 3vq2_A 176 LRENPQVNLSLDMSLNPIDF------IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249 (606)
T ss_dssp HHHCTTCCCEEECTTCCCCE------ECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred hhccccccceeeccCCCcce------eCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccc
Confidence 66654 46655554432 1111111113444444332110
Q ss_pred ----------------------CCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEE
Q 037465 260 ----------------------SHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEEL 317 (432)
Q Consensus 260 ----------------------~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 317 (432)
.......+. +..+++|+.|+++++.+ ..++ .+..+++|++|
T Consensus 250 ~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~---------------~~l~-~l~~~~~L~~L 312 (606)
T 3vq2_A 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSI---------------KYLE-DVPKHFKWQSL 312 (606)
T ss_dssp CCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCC---------------CCCC-CCCTTCCCSEE
T ss_pred cChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccc---------------hhhh-hccccccCCEE
Confidence 011111222 56667777777777762 1122 56667778888
Q ss_pred EEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCCCCCCcc-cceEecccccccccc
Q 037465 318 WIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTLYNLKSVKRV 373 (432)
Q Consensus 318 ~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~l~-L~~L~l~~c~~l~~~ 373 (432)
++.+|....+|.+ .+++|+.|++++|...... .++.++ |+.|++++|. ++.+
T Consensus 313 ~l~~n~l~~lp~~--~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~-l~~~ 365 (606)
T 3vq2_A 313 SIIRCQLKQFPTL--DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNA-LSFS 365 (606)
T ss_dssp EEESCCCSSCCCC--CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSC-EEEE
T ss_pred EcccccCcccccC--CCCccceeeccCCcCccch-hhccCCCCCEEECcCCc-cCCC
Confidence 8887777766744 7778888888777544444 345677 7777777765 4444
No 17
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=4.2e-24 Score=210.85 Aligned_cols=144 Identities=19% Similarity=0.278 Sum_probs=60.3
Q ss_pred CceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCc
Q 037465 61 GKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE 140 (432)
Q Consensus 61 ~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~ 140 (432)
.+++.|+++++.+..++. +.++++|++|++++|.+ .+ .+. +..+++|++|++++ +.++.++.
T Consensus 68 ~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l-----~~--~~~-~~~l~~L~~L~L~~---------n~l~~~~~ 129 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQI-----AD--ITP-LANLTNLTGLTLFN---------NQITDIDP 129 (466)
T ss_dssp TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-----CC--CGG-GTTCTTCCEEECCS---------SCCCCCGG
T ss_pred cCCCEEECCCCccCCchh-hhccccCCEEECCCCcc-----cc--Chh-hcCCCCCCEEECCC---------CCCCCChH
Confidence 344444444444444333 44444444444444422 11 111 44445555555554 33333332
Q ss_pred cccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccc
Q 037465 141 NVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLR 220 (432)
Q Consensus 141 ~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 220 (432)
+..+++|++|++++|.+..++ .+..+++|++|++.+ . ...++ .+..+++|+.|++++|.. ..++ .+..+++|+
T Consensus 130 -~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~-~-~~~~~-~~~~l~~L~~L~l~~n~l-~~~~-~l~~l~~L~ 202 (466)
T 1o6v_A 130 -LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN-Q-VTDLK-PLANLTTLERLDISSNKV-SDIS-VLAKLTNLE 202 (466)
T ss_dssp -GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE-S-CCCCG-GGTTCTTCCEEECCSSCC-CCCG-GGGGCTTCS
T ss_pred -HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC-c-ccCch-hhccCCCCCEEECcCCcC-CCCh-hhccCCCCC
Confidence 444555555555554444333 122222222222211 0 11111 144455566666665532 2222 244555555
Q ss_pred cccceEecc
Q 037465 221 TLGKFVVGG 229 (432)
Q Consensus 221 ~L~l~~~~~ 229 (432)
+|++.++..
T Consensus 203 ~L~l~~n~l 211 (466)
T 1o6v_A 203 SLIATNNQI 211 (466)
T ss_dssp EEECCSSCC
T ss_pred EEEecCCcc
Confidence 555555443
No 18
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=3.7e-24 Score=211.21 Aligned_cols=188 Identities=19% Similarity=0.172 Sum_probs=148.2
Q ss_pred CCceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC
Q 037465 60 GGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP 139 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp 139 (432)
..+++.+++.++.+..++. +..+++|++|++++|.+ .+ ++. +..+++|++|++++ +.+..++
T Consensus 45 l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l-----~~--~~~-~~~l~~L~~L~l~~---------n~l~~~~ 106 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQL-----TD--ITP-LKNLTKLVDILMNN---------NQIADIT 106 (466)
T ss_dssp HHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCC-----CC--CGG-GTTCTTCCEEECCS---------SCCCCCG
T ss_pred hccccEEecCCCCCccCcc-hhhhcCCCEEECCCCcc-----CC--chh-hhccccCCEEECCC---------CccccCh
Confidence 4679999999999988764 78899999999999954 33 333 89999999999999 6677776
Q ss_pred ccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccccc
Q 037465 140 ENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSL 219 (432)
Q Consensus 140 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L 219 (432)
. +.++++|++|++++|.+..++. +..+++|++|++++|. +..++ .++.+++|+.|++.++ ....+ .++.+++|
T Consensus 107 ~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~l~~~--~~~~~-~~~~l~~L 179 (466)
T 1o6v_A 107 P-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLSFGNQ--VTDLK-PLANLTTL 179 (466)
T ss_dssp G-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCG-GGTTCTTCSEEEEEES--CCCCG-GGTTCTTC
T ss_pred h-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCc-cCCCh-hhccCCcccEeecCCc--ccCch-hhccCCCC
Confidence 5 9999999999999999999875 8999999999999998 66665 5889999999999743 23333 38899999
Q ss_pred ccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeecc
Q 037465 220 RTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGR 285 (432)
Q Consensus 220 ~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 285 (432)
++|++.++.... ...+..+++|+.|+++++.-.... .+..+++|+.|++++|.
T Consensus 180 ~~L~l~~n~l~~-------~~~l~~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~l~~n~ 232 (466)
T 1o6v_A 180 ERLDISSNKVSD-------ISVLAKLTNLESLIATNNQISDIT------PLGILTNLDELSLNGNQ 232 (466)
T ss_dssp CEEECCSSCCCC-------CGGGGGCTTCSEEECCSSCCCCCG------GGGGCTTCCEEECCSSC
T ss_pred CEEECcCCcCCC-------ChhhccCCCCCEEEecCCcccccc------cccccCCCCEEECCCCC
Confidence 999999887553 245777888888888775432211 14556667777776666
No 19
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=1.8e-24 Score=220.73 Aligned_cols=146 Identities=15% Similarity=0.025 Sum_probs=87.0
Q ss_pred CCceEEEEeecCCCCCC-CccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465 60 GGKVRHLGLNFEGGAPL-PMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI 138 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l 138 (432)
+..++.|+++++.+..+ |..|.++++|++|++++|.+ .. +.+..|..+++|++|++++ +.+..+
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i-----~~-~~~~~~~~l~~L~~L~Ls~---------n~l~~~ 96 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI-----YW-IHEDTFQSQHRLDTLVLTA---------NPLIFM 96 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCC-----CE-ECTTTTTTCTTCCEEECTT---------CCCSEE
T ss_pred CCcCcEEEccCCccCcCChhHhccCccceEEECCCCcc-----ce-eChhhccCccccCeeeCCC---------Cccccc
Confidence 45778888888877774 55777788888888888743 22 2445577777777777777 444444
Q ss_pred -CccccCCccccEEEeCCcccccc-chhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcc
Q 037465 139 -PENVGKLIHLKYLNLSGLCIKRL-PETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKL 216 (432)
Q Consensus 139 -p~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l 216 (432)
|..++++++|++|++++|.+..+ |..++.+++|++|++++|.....-+..+..+++|++|++++|......|..++.+
T Consensus 97 ~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 176 (606)
T 3t6q_A 97 AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSL 176 (606)
T ss_dssp CTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTT
T ss_pred ChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhh
Confidence 55666677777777777666655 3456666666666666665222111223335556666665554333333334444
Q ss_pred cccc
Q 037465 217 TSLR 220 (432)
Q Consensus 217 ~~L~ 220 (432)
++|+
T Consensus 177 ~~L~ 180 (606)
T 3t6q_A 177 QQAT 180 (606)
T ss_dssp TTCC
T ss_pred cccc
Confidence 4444
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.8e-25 Score=225.87 Aligned_cols=290 Identities=14% Similarity=0.061 Sum_probs=203.9
Q ss_pred CCceEEEEeecCCCCCCCcc-ccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465 60 GGKVRHLGLNFEGGAPLPMS-FFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI 138 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l 138 (432)
..+++.+.+.++.+..+|.. +.++++|++|++++|.+ .+. .+..|..+++|++|++++ +.+..+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l-----~~~-~~~~~~~l~~L~~L~L~~---------n~l~~~ 114 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI-----EEI-DTYAFAYAHTIQKLYMGF---------NAIRYL 114 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCC-----CEE-CTTTTTTCTTCCEEECCS---------SCCCCC
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCC-----CCC-ChHHhcCCCCCCEEECCC---------CcCCCC
Confidence 45778888888888777764 57789999999999854 332 455688899999999998 566666
Q ss_pred C-ccccCCccccEEEeCCccccccchh-hhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcc
Q 037465 139 P-ENVGKLIHLKYLNLSGLCIKRLPET-LCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKL 216 (432)
Q Consensus 139 p-~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l 216 (432)
| ..++.+++|++|++++|.+..+|+. ++.+++|++|++++|......|..++.+++|+.|++++|.... ++ ++.+
T Consensus 115 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~--~~~l 191 (597)
T 3oja_B 115 PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLI 191 (597)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CC--GGGC
T ss_pred CHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cC--hhhh
Confidence 4 4568899999999999998888876 4889999999999998555556678889999999999885433 33 4456
Q ss_pred cccccccceEecccccCCCCcCcccc---------------ccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEE
Q 037465 217 TSLRTLGKFVVGGGVDGSSTCRLESL---------------KNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHL 281 (432)
Q Consensus 217 ~~L~~L~l~~~~~~~~~~~~~~~~~l---------------~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l 281 (432)
++|+.|++.++..... ..+..+ ...++|+.|+++++.-. . ...+..+++|+.|++
T Consensus 192 ~~L~~L~l~~n~l~~l----~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~-~-----~~~l~~l~~L~~L~L 261 (597)
T 3oja_B 192 PSLFHANVSYNLLSTL----AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLT-D-----TAWLLNYPGLVEVDL 261 (597)
T ss_dssp TTCSEEECCSSCCSEE----ECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCC-C-----CGGGGGCTTCSEEEC
T ss_pred hhhhhhhcccCccccc----cCCchhheeeccCCcccccccccCCCCCEEECCCCCCC-C-----ChhhccCCCCCEEEC
Confidence 6677766665543320 000000 01135666666654321 1 245667788888888
Q ss_pred eeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCCCCCCcc-cc
Q 037465 282 EFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LE 360 (432)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~l~-L~ 360 (432)
++|. .....+..+..+++|+.|++++|....+|.....+++|+.|++++|......+.++.++ |+
T Consensus 262 s~N~--------------l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~ 327 (597)
T 3oja_B 262 SYNE--------------LEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLE 327 (597)
T ss_dssp CSSC--------------CCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCS
T ss_pred CCCc--------------cCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCC
Confidence 8877 23334556777888888888888777777666678888888888885543333456678 88
Q ss_pred eEeccccccccccCccccCCCCCCCCCCCCCCCCcceEEEeCCccc
Q 037465 361 KLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELSIEGCPLL 406 (432)
Q Consensus 361 ~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~cp~L 406 (432)
.|++++|. ++.++. ..+++|+.|++++||--
T Consensus 328 ~L~L~~N~-l~~~~~--------------~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 328 NLYLDHNS-IVTLKL--------------STHHTLKNLTLSHNDWD 358 (597)
T ss_dssp EEECCSSC-CCCCCC--------------CTTCCCSEEECCSSCEE
T ss_pred EEECCCCC-CCCcCh--------------hhcCCCCEEEeeCCCCC
Confidence 88888887 555532 35889999999998743
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=4e-24 Score=216.00 Aligned_cols=126 Identities=18% Similarity=0.140 Sum_probs=86.2
Q ss_pred CCceEEEEeecCCCCCCC-ccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465 60 GGKVRHLGLNFEGGAPLP-MSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI 138 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l 138 (432)
.++++.|+++++.+..++ ..|.++++|++|++++|.+ ++. .+..|..+++|++|++++ +.++.+
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-----~~~-~~~~~~~l~~L~~L~Ls~---------N~l~~l 115 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI-----RSL-DFHVFLFNQDLEYLDVSH---------NRLQNI 115 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCC-----CEE-CTTTTTTCTTCCEEECTT---------SCCCEE
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCC-----CcC-CHHHhCCCCCCCEEECCC---------CcCCcc
Confidence 467777888877777755 4677778888888887743 222 345577778888888887 566677
Q ss_pred CccccCCccccEEEeCCccccccc--hhhhccCCccEEecccccccccCChhhhccccc--ceEEcCCCCc
Q 037465 139 PENVGKLIHLKYLNLSGLCIKRLP--ETLCELYNLQKLDIRWCRNLRELPAGIGKLMNM--RSLLNDNTRS 205 (432)
Q Consensus 139 p~~~~~l~~L~~L~L~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L--~~L~l~~~~~ 205 (432)
|.. .+++|++|++++|.+..+| ..++.+++|++|++++|.... ..+..+++| +.|++++|..
T Consensus 116 p~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 116 SCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSC
T ss_pred Ccc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeecccc
Confidence 765 6778888888888777553 577777888888887776322 234444444 7777766654
No 22
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=4.6e-24 Score=225.35 Aligned_cols=300 Identities=17% Similarity=0.117 Sum_probs=214.2
Q ss_pred cCCceEEEEeecCCCCCC-CccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccc
Q 037465 59 FGGKVRHLGLNFEGGAPL-PMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITE 137 (432)
Q Consensus 59 ~~~~i~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~ 137 (432)
.+++++.|+++++.+..+ +..|.++++|++|++++| .....+.+..|..+++|++|+|++ +.+..
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n-----~~~~~i~~~~f~~L~~L~~L~Ls~---------N~l~~ 87 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQ-----YTPLTIDKEAFRNLPNLRILDLGS---------SKIYF 87 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTT-----CCCCEECTTTTSSCTTCCEEECTT---------CCCCE
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCC-----CCccccCHHHhcCCCCCCEEECCC---------CcCcc
Confidence 378899999999999884 678999999999999999 344554567799999999999999 56666
Q ss_pred c-CccccCCccccEEEeCCccccc-cchh--hhccCCccEEecccccccccCC-hhhhcccccceEEcCCCCccccCCcc
Q 037465 138 I-PENVGKLIHLKYLNLSGLCIKR-LPET--LCELYNLQKLDIRWCRNLRELP-AGIGKLMNMRSLLNDNTRSLKYMPIG 212 (432)
Q Consensus 138 l-p~~~~~l~~L~~L~L~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~ 212 (432)
+ |..++++++|++|++++|.+.. +|.. +..+++|++|++++|......+ ..++.+++|++|++++|......+..
T Consensus 88 ~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~ 167 (844)
T 3j0a_A 88 LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE 167 (844)
T ss_dssp ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG
T ss_pred cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH
Confidence 6 8889999999999999999874 5554 8899999999999998544333 56899999999999999777777777
Q ss_pred CCcc--cccccccceEecccccCCCCcCccccccCc------cCCceeeCCCCCCCCchhhh------------------
Q 037465 213 ISKL--TSLRTLGKFVVGGGVDGSSTCRLESLKNLQ------LLRECGIEGLGNVSHLDEAE------------------ 266 (432)
Q Consensus 213 l~~l--~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~------~L~~L~l~~~~~~~~~~~~~------------------ 266 (432)
++.+ ++|+.|++..+.... ..+..++.+. .|+.|+++++.-........
T Consensus 168 l~~l~~~~L~~L~L~~n~l~~-----~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 168 LEPLQGKTLSFFSLAANSLYS-----RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp GHHHHHCSSCCCEECCSBSCC-----CCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred cccccCCccceEECCCCcccc-----ccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence 7766 788888888776653 2222333333 37777776642111111000
Q ss_pred --------------hccccc--ccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCC-Ch
Q 037465 267 --------------RLQLYN--QQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIF-PK 329 (432)
Q Consensus 267 --------------~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~ 329 (432)
...+.. .++|+.|++++|. ........+..+++|+.|++.+|....+ |.
T Consensus 243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~--------------l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~ 308 (844)
T 3j0a_A 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF--------------VFSLNSRVFETLKDLKVLNLAYNKINKIADE 308 (844)
T ss_dssp CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCC--------------CCEECSCCSSSCCCCCEEEEESCCCCEECTT
T ss_pred ccccccccccCCCChhhhhccccCCccEEECCCCc--------------ccccChhhhhcCCCCCEEECCCCcCCCCChH
Confidence 111111 2578888887776 2233345667788888888888777654 45
Q ss_pred hhhccCCCcEEEEeCCCCCCCCC-CCCCcc-cceEeccccccccccCccccCCCCCCCCCCCCCCCCcceEEEeCC
Q 037465 330 WLTSLTNLRNLYLSSCFNCEHLP-PLGKLP-LEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELSIEGC 403 (432)
Q Consensus 330 ~l~~l~~L~~L~l~~~~~~~~l~-~~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c 403 (432)
.+..+++|+.|++++|......+ .++.++ |+.|++++|. ++.++...+. .+++|+.|++++|
T Consensus 309 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~-----------~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 309 AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTFK-----------FLEKLQTLDLRDN 372 (844)
T ss_dssp TTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCC-CCCCCSSCSC-----------SCCCCCEEEEETC
T ss_pred HhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCC-CCccChhhhc-----------CCCCCCEEECCCC
Confidence 66788888888888886554433 567788 8888888875 6666554332 2556666666654
No 23
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=6.2e-25 Score=224.05 Aligned_cols=106 Identities=24% Similarity=0.358 Sum_probs=69.4
Q ss_pred CCceEEEEeecCCCCCC-CccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465 60 GGKVRHLGLNFEGGAPL-PMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI 138 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l 138 (432)
.++++.|+++++.+..+ |..|.++++|++|++++|.+ ... .+..|..+++|++|++++ +.+..+
T Consensus 55 l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l-----~~~-~p~~~~~l~~L~~L~L~~---------n~l~~~ 119 (606)
T 3vq2_A 55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI-----QSF-SPGSFSGLTSLENLVAVE---------TKLASL 119 (606)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC-----CCC-CTTSSTTCTTCCEEECTT---------SCCCCS
T ss_pred CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcc-----ccc-ChhhcCCcccCCEEEccC---------Cccccc
Confidence 45777777777777764 45677777778887777743 222 345577777777777777 445554
Q ss_pred C-ccccCCccccEEEeCCcccc--ccchhhhccCCccEEeccccc
Q 037465 139 P-ENVGKLIHLKYLNLSGLCIK--RLPETLCELYNLQKLDIRWCR 180 (432)
Q Consensus 139 p-~~~~~l~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~~ 180 (432)
+ ..++++++|++|++++|.+. .+|..++++++|++|++++|.
T Consensus 120 ~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 120 ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp SSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred cccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence 3 45666666777777666655 356666666666666666665
No 24
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=5.5e-25 Score=224.45 Aligned_cols=298 Identities=20% Similarity=0.165 Sum_probs=222.1
Q ss_pred ceEEEEeecCCCCCCCc-cccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-C
Q 037465 62 KVRHLGLNFEGGAPLPM-SFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-P 139 (432)
Q Consensus 62 ~i~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-p 139 (432)
.++.+.+.++.+..++. .|.++++|++|++++|.++ . +|..+..+++|++|++++ +.++.+ |
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------~-lp~~l~~l~~L~~L~l~~---------n~l~~~~~ 318 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS------E-LPSGLVGLSTLKKLVLSA---------NKFENLCQ 318 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS------C-CCSSCCSCTTCCEEECTT---------CCCSBGGG
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC------C-CChhhcccccCCEEECcc---------CCcCcCch
Confidence 68888888888887555 4788899999999998542 2 455578889999999998 556665 5
Q ss_pred ccccCCccccEEEeCCcccc-ccch-hhhccCCccEEecccccccccC--ChhhhcccccceEEcCCCCccccCCccCCc
Q 037465 140 ENVGKLIHLKYLNLSGLCIK-RLPE-TLCELYNLQKLDIRWCRNLREL--PAGIGKLMNMRSLLNDNTRSLKYMPIGISK 215 (432)
Q Consensus 140 ~~~~~l~~L~~L~L~~~~l~-~lp~-~i~~l~~L~~L~l~~~~~~~~l--p~~i~~l~~L~~L~l~~~~~~~~~p~~l~~ 215 (432)
..+..+++|++|++++|.+. .+|. .+..+++|++|++++|...... |..++.+++|++|++++|......|..++.
T Consensus 319 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 398 (606)
T 3t6q_A 319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE 398 (606)
T ss_dssp GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTT
T ss_pred hhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcC
Confidence 67888899999999998865 6654 4788899999999988843332 667888899999999998776666777888
Q ss_pred ccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHh
Q 037465 216 LTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERR 295 (432)
Q Consensus 216 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 295 (432)
+++|++|++.++.... ......+..+++|+.|+++++.- ....+..+..+++|++|++++|.+.++.
T Consensus 399 l~~L~~L~l~~n~l~~----~~~~~~~~~l~~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~L~~n~l~~~~----- 465 (606)
T 3t6q_A 399 CPQLELLDLAFTRLKV----KDAQSPFQNLHLLKVLNLSHSLL----DISSEQLFDGLPALQHLNLQGNHFPKGN----- 465 (606)
T ss_dssp CTTCSEEECTTCCEEC----CTTCCTTTTCTTCCEEECTTCCC----BTTCTTTTTTCTTCCEEECTTCBCGGGE-----
T ss_pred CccCCeEECCCCcCCC----cccchhhhCcccCCEEECCCCcc----CCcCHHHHhCCCCCCEEECCCCCCCccc-----
Confidence 8999999988876653 22233477888899999887532 2233455777889999999988732110
Q ss_pred hhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCC-ChhhhccCCCcEEEEeCCCCCCCCC-CCCCcc-cceEeccccccccc
Q 037465 296 RKKEKDEQLLKALQPPVNVEELWIVYYGGNIF-PKWLTSLTNLRNLYLSSCFNCEHLP-PLGKLP-LEKLTLYNLKSVKR 372 (432)
Q Consensus 296 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~l~-~~~~l~-L~~L~l~~c~~l~~ 372 (432)
......+..+++|+.|++++|....+ |.++..+++|+.|++++|......| .++.++ | .|++++|. ++.
T Consensus 466 ------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~-l~~ 537 (606)
T 3t6q_A 466 ------IQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH-ISI 537 (606)
T ss_dssp ------ECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC-CCC
T ss_pred ------cccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCc-ccc
Confidence 01124567788999999998877664 5677789999999999997665444 577788 8 99999987 666
Q ss_pred cCccccCCCCCCCCCCCCCCCCcceEEEeCCcccc
Q 037465 373 VGNEFLGIEESSEDDPSSSSSSSSELSIEGCPLLE 407 (432)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~cp~L~ 407 (432)
++...++ .+++|+.|++++||--.
T Consensus 538 ~~~~~~~-----------~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 538 ILPSLLP-----------ILSQQRTINLRQNPLDC 561 (606)
T ss_dssp CCGGGHH-----------HHHTSSEEECTTCCEEC
T ss_pred cCHhhcc-----------cCCCCCEEeCCCCCccc
Confidence 6655433 37899999999988653
No 25
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=2.1e-24 Score=216.12 Aligned_cols=144 Identities=18% Similarity=0.138 Sum_probs=120.7
Q ss_pred EEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-Cccc
Q 037465 64 RHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-PENV 142 (432)
Q Consensus 64 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-p~~~ 142 (432)
+.++++++.+..+|..+. ++|++|++++|.+ .+. .+..|..+++|++|++++ +.++.+ |..+
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i-----~~~-~~~~~~~l~~L~~L~Ls~---------n~l~~~~~~~~ 65 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYI-----SEL-WTSDILSLSKLRILIISH---------NRIQYLDISVF 65 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCC-----CCC-CHHHHTTCTTCCEEECCS---------SCCCEEEGGGG
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCcc-----ccc-ChhhccccccccEEecCC---------CccCCcChHHh
Confidence 568999999999998776 8999999999954 333 556799999999999999 667777 7789
Q ss_pred cCCccccEEEeCCccccccchhhhccCCccEEecccccccc-cCChhhhcccccceEEcCCCCccccCCccCCccccc--
Q 037465 143 GKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLR-ELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSL-- 219 (432)
Q Consensus 143 ~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L-- 219 (432)
+++++|++|++++|.+..+|.. .+++|++|++++|.... .+|..++.+++|++|++++|.... ..++.+++|
T Consensus 66 ~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L 140 (520)
T 2z7x_B 66 KFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNI 140 (520)
T ss_dssp TTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCE
T ss_pred hcccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhcccccccee
Confidence 9999999999999999999977 89999999999999544 478899999999999999996544 345566666
Q ss_pred ccccceEecc
Q 037465 220 RTLGKFVVGG 229 (432)
Q Consensus 220 ~~L~l~~~~~ 229 (432)
++|++.++..
T Consensus 141 ~~L~l~~n~l 150 (520)
T 2z7x_B 141 SKVLLVLGET 150 (520)
T ss_dssp EEEEEEECTT
T ss_pred eEEEeecccc
Confidence 7777777655
No 26
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=7.7e-25 Score=220.69 Aligned_cols=153 Identities=21% Similarity=0.284 Sum_probs=120.3
Q ss_pred CCceEEEEeecCCCCCC-CccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465 60 GGKVRHLGLNFEGGAPL-PMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI 138 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l 138 (432)
.+.++.|+++++.+..+ +..|.++++|++|++++|++ .+. .+..|..+++|++|++++ +.+..+
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i-----~~~-~~~~~~~l~~L~~L~Ls~---------n~l~~~ 89 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI-----NTI-EGDAFYSLGSLEHLDLSD---------NHLSSL 89 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCC-----CEE-CTTTTTTCTTCCEEECTT---------SCCCSC
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCc-----Ccc-ChhhccccccCCEEECCC---------CccCcc
Confidence 46899999999988875 56788999999999999954 332 455688999999999999 667777
Q ss_pred Ccc-ccCCccccEEEeCCccccc--cchhhhccCCccEEecccccccccCC-hhhhcccccceEEcCCCCccccCCccCC
Q 037465 139 PEN-VGKLIHLKYLNLSGLCIKR--LPETLCELYNLQKLDIRWCRNLRELP-AGIGKLMNMRSLLNDNTRSLKYMPIGIS 214 (432)
Q Consensus 139 p~~-~~~l~~L~~L~L~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~l~ 214 (432)
+.. ++++++|++|++++|.+.. .|..++.+++|++|++++|.....+| ..+..+++|++|++++|......|..++
T Consensus 90 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 169 (549)
T 2z81_A 90 SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK 169 (549)
T ss_dssp CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh
Confidence 554 8889999999999999874 46678889999999999987666666 4688889999999998877666777776
Q ss_pred cccccccccceEe
Q 037465 215 KLTSLRTLGKFVV 227 (432)
Q Consensus 215 ~l~~L~~L~l~~~ 227 (432)
.+++|++|++..+
T Consensus 170 ~l~~L~~L~l~~n 182 (549)
T 2z81_A 170 SIRDIHHLTLHLS 182 (549)
T ss_dssp TCSEEEEEEEECS
T ss_pred ccccCceEecccC
Confidence 6666655555443
No 27
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=4.1e-24 Score=201.46 Aligned_cols=284 Identities=19% Similarity=0.149 Sum_probs=194.7
Q ss_pred ceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-Cc
Q 037465 62 KVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-PE 140 (432)
Q Consensus 62 ~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-p~ 140 (432)
+++.+.+.++.+..+|..+. ++|++|++++|.+ .. ..+..+..+++|++|++++ +.++.+ |.
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i-----~~-~~~~~~~~l~~L~~L~L~~---------n~l~~~~~~ 96 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDI-----SE-LRKDDFKGLQHLYALVLVN---------NKISKIHEK 96 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCC-----CE-ECTTTTTTCTTCCEEECCS---------SCCCEECGG
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcC-----Cc-cCHhHhhCCCCCcEEECCC---------CccCccCHh
Confidence 45678888888888887663 6899999999854 22 2455588899999999998 566666 67
Q ss_pred cccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCCh-hhhcccccceEEcCCCCccc--cCCccCCccc
Q 037465 141 NVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPA-GIGKLMNMRSLLNDNTRSLK--YMPIGISKLT 217 (432)
Q Consensus 141 ~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~p~~l~~l~ 217 (432)
.+.++++|++|++++|.+..+|..+. ++|++|++++|. +..+|. .+..+++|+.|++++|.... ..+..+..+
T Consensus 97 ~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l- 172 (332)
T 2ft3_A 97 AFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL- 172 (332)
T ss_dssp GSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-
T ss_pred HhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-
Confidence 78889999999999999888887665 789999999988 555554 47788999999999886532 455666666
Q ss_pred ccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhh
Q 037465 218 SLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRK 297 (432)
Q Consensus 218 ~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 297 (432)
+|+.|++.++.... .+..+. ++|+.|++++..- ....+..+..+++|+.|++++|.+.+
T Consensus 173 ~L~~L~l~~n~l~~------l~~~~~--~~L~~L~l~~n~i----~~~~~~~l~~l~~L~~L~L~~N~l~~--------- 231 (332)
T 2ft3_A 173 KLNYLRISEAKLTG------IPKDLP--ETLNELHLDHNKI----QAIELEDLLRYSKLYRLGLGHNQIRM--------- 231 (332)
T ss_dssp CCSCCBCCSSBCSS------CCSSSC--SSCSCCBCCSSCC----CCCCTTSSTTCTTCSCCBCCSSCCCC---------
T ss_pred ccCEEECcCCCCCc------cCcccc--CCCCEEECCCCcC----CccCHHHhcCCCCCCEEECCCCcCCc---------
Confidence 88888888776653 222222 5777877776422 11223456777888888888887322
Q ss_pred hhhhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCC-CCC------Ccc-cceEecccccc
Q 037465 298 KEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLP-PLG------KLP-LEKLTLYNLKS 369 (432)
Q Consensus 298 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~-~~~------~l~-L~~L~l~~c~~ 369 (432)
.....+..+++|+.|++++|....+|.++..+++|+.|++++|......+ .+. ..+ |+.|++.+++
T Consensus 232 -----~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~- 305 (332)
T 2ft3_A 232 -----IENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP- 305 (332)
T ss_dssp -----CCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS-
T ss_pred -----CChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCc-
Confidence 22234566778888888887777777777788888888888875433211 121 145 7788888877
Q ss_pred cc--ccCccccCCCCCCCCCCCCCCCCcceEEEeCCc
Q 037465 370 VK--RVGNEFLGIEESSEDDPSSSSSSSSELSIEGCP 404 (432)
Q Consensus 370 l~--~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~cp 404 (432)
+. .++...+. .+++|+.+++++|.
T Consensus 306 ~~~~~~~~~~~~-----------~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 306 VPYWEVQPATFR-----------CVTDRLAIQFGNYK 331 (332)
T ss_dssp SCGGGSCGGGGT-----------TBCCSTTEEC----
T ss_pred ccccccCccccc-----------ccchhhhhhccccc
Confidence 33 23322221 36777777777764
No 28
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=6.8e-24 Score=199.80 Aligned_cols=262 Identities=18% Similarity=0.132 Sum_probs=171.4
Q ss_pred ceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-Cc
Q 037465 62 KVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-PE 140 (432)
Q Consensus 62 ~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-p~ 140 (432)
+++.+++.+..+..+|..+. ++|++|++++|.+ ++. .+..+..+++|++|++++ +.++.+ |.
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i-----~~~-~~~~~~~l~~L~~L~L~~---------n~l~~~~~~ 94 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKI-----TEI-KDGDFKNLKNLHTLILIN---------NKISKISPG 94 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCC-----CCB-CTTTTTTCTTCCEEECCS---------SCCCCBCTT
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcC-----CEe-ChhhhccCCCCCEEECCC---------CcCCeeCHH
Confidence 45667777777777777653 6788899988854 332 444588888999999988 566666 77
Q ss_pred cccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccc--cCCccCCcccc
Q 037465 141 NVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLK--YMPIGISKLTS 218 (432)
Q Consensus 141 ~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~p~~l~~l~~ 218 (432)
.+..+++|++|++++|.++.+|..+. ++|++|++++|......+..+..+++|+.|++++|.... ..+..+..+++
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 172 (330)
T 1xku_A 95 AFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172 (330)
T ss_dssp TTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT
T ss_pred HhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCC
Confidence 78888999999999888888887654 788999998887444344457788889999988886532 44566777888
Q ss_pred cccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhh
Q 037465 219 LRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKK 298 (432)
Q Consensus 219 L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 298 (432)
|++|++.++.... .+..+ .++|+.|++++.. .....+..+..+++|+.|++++|.+.
T Consensus 173 L~~L~l~~n~l~~------l~~~~--~~~L~~L~l~~n~----l~~~~~~~~~~l~~L~~L~Ls~n~l~----------- 229 (330)
T 1xku_A 173 LSYIRIADTNITT------IPQGL--PPSLTELHLDGNK----ITKVDAASLKGLNNLAKLGLSFNSIS----------- 229 (330)
T ss_dssp CCEEECCSSCCCS------CCSSC--CTTCSEEECTTSC----CCEECTGGGTTCTTCCEEECCSSCCC-----------
T ss_pred cCEEECCCCcccc------CCccc--cccCCEEECCCCc----CCccCHHHhcCCCCCCEEECCCCcCc-----------
Confidence 8888887765543 11111 1567777776632 11222344566677777777776621
Q ss_pred hhhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCC-CC------CCcc-cceEeccccc
Q 037465 299 EKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLP-PL------GKLP-LEKLTLYNLK 368 (432)
Q Consensus 299 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~-~~------~~l~-L~~L~l~~c~ 368 (432)
......+..+++|++|++++|....+|.++..+++|+.|++++|......+ .+ ...+ |+.|++.+++
T Consensus 230 ---~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 230 ---AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp ---EECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred ---eeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCc
Confidence 112234455666677777666666666666666677777776664332111 11 1235 6666666666
No 29
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.92 E-value=4.4e-24 Score=220.70 Aligned_cols=156 Identities=21% Similarity=0.218 Sum_probs=127.5
Q ss_pred CCceEEEEeecCCCCCCCc-cccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465 60 GGKVRHLGLNFEGGAPLPM-SFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI 138 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l 138 (432)
.++++.|+++++.+..++. .|.++++|++|++++|.+ .+. .+..+..+++|++|++++ +.+..+
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-----~~~-~~~~~~~l~~L~~L~L~~---------n~l~~l 88 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-----SKL-EPELCQKLPMLKVLNLQH---------NELSQL 88 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCC-----CCC-CTTHHHHCTTCCEEECCS---------SCCCCC
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCcc-----Ccc-CHHHHhcccCcCEEECCC---------CccCcc
Confidence 5789999999999988665 689999999999999954 343 566689999999999999 678888
Q ss_pred Cc-cccCCccccEEEeCCccccccc-hhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCC--
Q 037465 139 PE-NVGKLIHLKYLNLSGLCIKRLP-ETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGIS-- 214 (432)
Q Consensus 139 p~-~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~-- 214 (432)
|. .|+++++|++|++++|.+..+| ..++.+++|++|++++|......|..++.+++|++|++++|......+..++
T Consensus 89 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 168 (680)
T 1ziw_A 89 SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIF 168 (680)
T ss_dssp CTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGG
T ss_pred ChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcc
Confidence 76 5899999999999999988887 4789999999999999986566677788899999999999865444444333
Q ss_pred cccccccccceEeccc
Q 037465 215 KLTSLRTLGKFVVGGG 230 (432)
Q Consensus 215 ~l~~L~~L~l~~~~~~ 230 (432)
.+++|++|++.++...
T Consensus 169 ~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 169 ANSSLKKLELSSNQIK 184 (680)
T ss_dssp TTCEESEEECTTCCCC
T ss_pred ccccccEEECCCCccc
Confidence 4578888888877554
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=4.1e-24 Score=209.75 Aligned_cols=253 Identities=15% Similarity=0.142 Sum_probs=196.5
Q ss_pred CCceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC
Q 037465 60 GGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP 139 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp 139 (432)
.++++.|+++++.+..+| .+..+++|++|++++|.++. ++ +..+++|++|++++ +.++.++
T Consensus 41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~-------~~--~~~l~~L~~L~Ls~---------N~l~~~~ 101 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITT-------LD--LSQNTNLTYLACDS---------NKLTNLD 101 (457)
T ss_dssp HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSC-------CC--CTTCTTCSEEECCS---------SCCSCCC
T ss_pred cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCe-------Ec--cccCCCCCEEECcC---------CCCceee
Confidence 578999999999998876 68999999999999996533 22 78899999999999 5677775
Q ss_pred ccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccccc
Q 037465 140 ENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSL 219 (432)
Q Consensus 140 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L 219 (432)
++.+++|++|++++|.+..+| ++.+++|++|++++|. +..++ ++.+++|++|++++|...+.+ .++.+++|
T Consensus 102 --~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L 172 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQL 172 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTC
T ss_pred --cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc--ccccCCcC
Confidence 889999999999999998886 8899999999999998 55564 788999999999999776666 37789999
Q ss_pred ccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhh
Q 037465 220 RTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKE 299 (432)
Q Consensus 220 ~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 299 (432)
+.|++.++.... .+ ++.+++|+.|+++++.- ... .+..+++|+.|++++|.+.
T Consensus 173 ~~L~ls~n~l~~-------l~-l~~l~~L~~L~l~~N~l-~~~------~l~~l~~L~~L~Ls~N~l~------------ 225 (457)
T 3bz5_A 173 TTLDCSFNKITE-------LD-VSQNKLLNRLNCDTNNI-TKL------DLNQNIQLTFLDCSSNKLT------------ 225 (457)
T ss_dssp CEEECCSSCCCC-------CC-CTTCTTCCEEECCSSCC-SCC------CCTTCTTCSEEECCSSCCS------------
T ss_pred CEEECCCCccce-------ec-cccCCCCCEEECcCCcC-Cee------ccccCCCCCEEECcCCccc------------
Confidence 999998887653 12 77888999999887432 221 3778899999999999831
Q ss_pred hhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEE----------EEeCCCCCCCCCCCCCcc-cceEeccccc
Q 037465 300 KDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNL----------YLSSCFNCEHLPPLGKLP-LEKLTLYNLK 368 (432)
Q Consensus 300 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L----------~l~~~~~~~~l~~~~~l~-L~~L~l~~c~ 368 (432)
. ++ +..+++|+.|++++|....+| ...+++|+.| ++++|...+.+| .+.++ |+.|++++|.
T Consensus 226 --~-ip--~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~ 297 (457)
T 3bz5_A 226 --E-ID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNT 297 (457)
T ss_dssp --C-CC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCT
T ss_pred --c-cC--ccccCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCc
Confidence 1 22 677889999999988877655 3345555544 444444444444 45678 8888888888
Q ss_pred cccccCc
Q 037465 369 SVKRVGN 375 (432)
Q Consensus 369 ~l~~~~~ 375 (432)
.++.++.
T Consensus 298 ~l~~l~~ 304 (457)
T 3bz5_A 298 QLYLLDC 304 (457)
T ss_dssp TCCEEEC
T ss_pred ccceecc
Confidence 7777764
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=7.6e-24 Score=204.18 Aligned_cols=289 Identities=15% Similarity=0.091 Sum_probs=203.8
Q ss_pred cccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC-ccccCCccccEEEeCCcccc
Q 037465 81 FEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP-ENVGKLIHLKYLNLSGLCIK 159 (432)
Q Consensus 81 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp-~~~~~l~~L~~L~L~~~~l~ 159 (432)
..+++++.|+++++.+ ..+++..+..+++|++|++++ +.++.++ ..+..+++|++|++++|.+.
T Consensus 42 ~~l~~l~~l~l~~~~l------~~l~~~~~~~l~~L~~L~L~~---------n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 106 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTM------RKLPAALLDSFRQVELLNLND---------LQIEEIDTYAFAYAHTIQKLYMGFNAIR 106 (390)
T ss_dssp GGGCCCSEEEEESCEE------SEECTHHHHHCCCCSEEECTT---------SCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred cccCCceEEEecCCch------hhCChhHhcccccCcEEECCC---------CcccccChhhccCCCCcCEEECCCCCCC
Confidence 4578999999999954 333556689999999999999 6677775 48899999999999999999
Q ss_pred ccch-hhhccCCccEEecccccccccCChhh-hcccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCc
Q 037465 160 RLPE-TLCELYNLQKLDIRWCRNLRELPAGI-GKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTC 237 (432)
Q Consensus 160 ~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~i-~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~ 237 (432)
.+|+ .++.+++|++|++++|. +..+|..+ ..+++|++|++++|......|..++.+++|++|++.++.... .
T Consensus 107 ~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----~ 180 (390)
T 3o6n_A 107 YLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-----V 180 (390)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-----C
T ss_pred cCCHHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-----c
Confidence 8765 58999999999999998 77787764 789999999999997766666778999999999999887653 1
Q ss_pred CccccccCccCCceeeCCCCCCCCchh-------------hhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhh
Q 037465 238 RLESLKNLQLLRECGIEGLGNVSHLDE-------------AERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQL 304 (432)
Q Consensus 238 ~~~~l~~l~~L~~L~l~~~~~~~~~~~-------------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 304 (432)
.++.+++|+.+++++..- ..... .........++|+.|++++|.+.+
T Consensus 181 ---~~~~l~~L~~L~l~~n~l-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~---------------- 240 (390)
T 3o6n_A 181 ---DLSLIPSLFHANVSYNLL-STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD---------------- 240 (390)
T ss_dssp ---CGGGCTTCSEEECCSSCC-SEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC----------------
T ss_pred ---ccccccccceeecccccc-cccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcc----------------
Confidence 244555666665554211 00000 000001223567777777776321
Q ss_pred hhcCCCCCCCcEEEEeeeCCCCC-ChhhhccCCCcEEEEeCCCCCCCCCCCCCcc-cceEeccccccccccCccccCCCC
Q 037465 305 LKALQPPVNVEELWIVYYGGNIF-PKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTLYNLKSVKRVGNEFLGIEE 382 (432)
Q Consensus 305 ~~~l~~~~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~l~~~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~ 382 (432)
...+..+++|++|++++|....+ |..+..+++|+.|++++|.........+.+| |++|++++|. ++.++..+.
T Consensus 241 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~---- 315 (390)
T 3o6n_A 241 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQP---- 315 (390)
T ss_dssp CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHH----
T ss_pred cHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCc-ceecCcccc----
Confidence 13566678888888888776654 6677788888888888885444333455678 8888888886 776665432
Q ss_pred CCCCCCCCCCCCcceEEEeCCccccccccCCCCCCcccccCCCCccCCC
Q 037465 383 SSEDDPSSSSSSSSELSIEGCPLLENRYREGKGEDWHKISHIPHIQMSP 431 (432)
Q Consensus 383 ~~~~~~~~~~~~L~~L~i~~cp~L~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (432)
.+++|+.|++++|+ ++.+ +....+.+..+.+++
T Consensus 316 --------~l~~L~~L~L~~N~-i~~~-------~~~~~~~L~~L~l~~ 348 (390)
T 3o6n_A 316 --------QFDRLENLYLDHNS-IVTL-------KLSTHHTLKNLTLSH 348 (390)
T ss_dssp --------HHTTCSEEECCSSC-CCCC-------CCCTTCCCSEEECCS
T ss_pred --------ccCcCCEEECCCCc-ccee-------CchhhccCCEEEcCC
Confidence 36788888888876 3322 133344555555554
No 32
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=9.9e-25 Score=203.83 Aligned_cols=226 Identities=14% Similarity=0.133 Sum_probs=172.4
Q ss_pred CCceEEEEeec-CCCC-CCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccc-
Q 037465 60 GGKVRHLGLNF-EGGA-PLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLIT- 136 (432)
Q Consensus 60 ~~~i~~L~l~~-~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~- 136 (432)
.++++.|++.+ +.+. .+|..+.++++|++|++++|. +++. ++..+..+++|++|++++ +.+.
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-----l~~~-~p~~~~~l~~L~~L~Ls~---------N~l~~ 139 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-----VSGA-IPDFLSQIKTLVTLDFSY---------NALSG 139 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-----CEEE-CCGGGGGCTTCCEEECCS---------SEEES
T ss_pred CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe-----eCCc-CCHHHhCCCCCCEEeCCC---------CccCC
Confidence 56899999994 7666 478899999999999999994 4444 556699999999999999 5565
Q ss_pred ccCccccCCccccEEEeCCcccc-ccchhhhccC-CccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCC
Q 037465 137 EIPENVGKLIHLKYLNLSGLCIK-RLPETLCELY-NLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGIS 214 (432)
Q Consensus 137 ~lp~~~~~l~~L~~L~L~~~~l~-~lp~~i~~l~-~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~ 214 (432)
.+|..+..+++|++|++++|.+. .+|..++.++ +|++|++++|...+.+|..+..++ |+.|++++|......|..++
T Consensus 140 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~ 218 (313)
T 1ogq_A 140 TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFG 218 (313)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCC
T ss_pred cCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHh
Confidence 67999999999999999999988 8999999998 999999999996678999999887 99999999987777888899
Q ss_pred cccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHH
Q 037465 215 KLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEER 294 (432)
Q Consensus 215 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 294 (432)
.+++|+.|++.++.... .+..+..+++|+.|++++ |.
T Consensus 219 ~l~~L~~L~L~~N~l~~------~~~~~~~l~~L~~L~Ls~----------------------------N~--------- 255 (313)
T 1ogq_A 219 SDKNTQKIHLAKNSLAF------DLGKVGLSKNLNGLDLRN----------------------------NR--------- 255 (313)
T ss_dssp TTSCCSEEECCSSEECC------BGGGCCCCTTCCEEECCS----------------------------SC---------
T ss_pred cCCCCCEEECCCCceee------ecCcccccCCCCEEECcC----------------------------Cc---------
Confidence 99999999998876642 223344455555555554 43
Q ss_pred hhhhhhhHhhhhcCCCCCCCcEEEEeeeCCC-CCChhhhccCCCcEEEEeCCCCCCC
Q 037465 295 RRKKEKDEQLLKALQPPVNVEELWIVYYGGN-IFPKWLTSLTNLRNLYLSSCFNCEH 350 (432)
Q Consensus 295 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~ 350 (432)
..+..+..+..+++|+.|++++|... .+|.. ..+++|+.|++.+|+.+..
T Consensus 256 -----l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 256 -----IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp -----CEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred -----ccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 11223333444455555555554443 34544 6788888888888864443
No 33
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=3.3e-23 Score=209.30 Aligned_cols=146 Identities=16% Similarity=0.119 Sum_probs=119.8
Q ss_pred ceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-Cc
Q 037465 62 KVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-PE 140 (432)
Q Consensus 62 ~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-p~ 140 (432)
..+.++++++.+..+|..+. ++|++|++++|.+ .+. .+..|..+++|++|++++ +.++.+ |.
T Consensus 32 ~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i-----~~~-~~~~~~~l~~L~~L~Ls~---------N~l~~~~~~ 94 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSI-----SEL-RMPDISFLSELRVLRLSH---------NRIRSLDFH 94 (562)
T ss_dssp -CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCC-----CCC-CGGGTTTCTTCCEEECCS---------CCCCEECTT
T ss_pred CCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCc-----ccc-ChhhhccCCCccEEECCC---------CCCCcCCHH
Confidence 34789999999999998764 8999999999954 333 556699999999999999 677777 67
Q ss_pred cccCCccccEEEeCCccccccchhhhccCCccEEecccccccc-cCChhhhcccccceEEcCCCCccccCCccCCccccc
Q 037465 141 NVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLR-ELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSL 219 (432)
Q Consensus 141 ~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L 219 (432)
.+.++++|++|++++|.+..+|.. .+++|++|++++|.... .+|..++.+++|++|++++|.... ..+..+++|
T Consensus 95 ~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L 169 (562)
T 3a79_B 95 VFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHL 169 (562)
T ss_dssp TTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTS
T ss_pred HhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc---Cchhhhhhc
Confidence 799999999999999999999977 89999999999998433 345789999999999999996543 234555555
Q ss_pred --ccccceEecc
Q 037465 220 --RTLGKFVVGG 229 (432)
Q Consensus 220 --~~L~l~~~~~ 229 (432)
++|++..+..
T Consensus 170 ~L~~L~L~~n~l 181 (562)
T 3a79_B 170 HLSCILLDLVSY 181 (562)
T ss_dssp CEEEEEEEESSC
T ss_pred eeeEEEeecccc
Confidence 8888877755
No 34
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.91 E-value=1.7e-23 Score=211.80 Aligned_cols=273 Identities=18% Similarity=0.152 Sum_probs=195.0
Q ss_pred CCceEEEEeecCCCCCC-CccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465 60 GGKVRHLGLNFEGGAPL-PMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI 138 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l 138 (432)
...++.|+++++.+..+ +..|.++++|++|++++|.+ .+ +.+..|..+++|++|++++ +.++.+
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i-----~~-i~~~~~~~l~~L~~L~L~~---------n~l~~~ 91 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-----QT-IEDGAYQSLSHLSTLILTG---------NPIQSL 91 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCC-----CE-ECTTTTTTCTTCCEEECTT---------CCCCEE
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCCcC-----Cc-cCcccccCchhCCEEeCcC---------CcCCcc
Confidence 56899999999998885 44789999999999999954 33 2456689999999999999 667777
Q ss_pred C-ccccCCccccEEEeCCccccccch-hhhccCCccEEecccccccc-cCChhhhcccccceEEcCCCCccccCCccCCc
Q 037465 139 P-ENVGKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLR-ELPAGIGKLMNMRSLLNDNTRSLKYMPIGISK 215 (432)
Q Consensus 139 p-~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~ 215 (432)
| ..+..+++|++|++++|.+..++. .++.+++|++|++++|.... .+|..++++++|++|++++|......+..++.
T Consensus 92 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 171 (570)
T 2z63_A 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171 (570)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHH
T ss_pred CHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccc
Confidence 4 678999999999999999988875 68999999999999998444 47889999999999999999666555666777
Q ss_pred cccc----ccccceEecccccCCCCcCccccccCccCCceeeCCCCCC---------------------------C----
Q 037465 216 LTSL----RTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNV---------------------------S---- 260 (432)
Q Consensus 216 l~~L----~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~---------------------------~---- 260 (432)
+++| +.+++..+..... .+..+..+ +|+.+++.+.... .
T Consensus 172 l~~L~~~~~~L~l~~n~l~~~-----~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~ 245 (570)
T 2z63_A 172 LHQMPLLNLSLDLSLNPMNFI-----QPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245 (570)
T ss_dssp HHTCTTCCCEEECTTCCCCEE-----CTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEE
T ss_pred hhccchhhhhcccCCCCceec-----CHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhh
Confidence 7777 6677666654321 11112211 3444433321000 0
Q ss_pred -----------------------CchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEE
Q 037465 261 -----------------------HLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEEL 317 (432)
Q Consensus 261 -----------------------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 317 (432)
......+..+..+++|+.|++++|.+ ..++..+..+ +|++|
T Consensus 246 ~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l---------------~~l~~~~~~~-~L~~L 309 (570)
T 2z63_A 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI---------------ERVKDFSYNF-GWQHL 309 (570)
T ss_dssp CCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEE---------------CSCCBCCSCC-CCSEE
T ss_pred cchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccc---------------hhhhhhhccC-CccEE
Confidence 01112234456678888888888772 2345556666 88888
Q ss_pred EEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCCCCCCcc-cceEecccccccccc
Q 037465 318 WIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTLYNLKSVKRV 373 (432)
Q Consensus 318 ~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~l~-L~~L~l~~c~~l~~~ 373 (432)
++.+|....+|. ..+++|+.|++++|......+. ..+| |+.|++++|. ++.+
T Consensus 310 ~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~-l~~~ 362 (570)
T 2z63_A 310 ELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNG-LSFK 362 (570)
T ss_dssp EEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSC-CBEE
T ss_pred eeccCcccccCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCc-cCcc
Confidence 888887777665 3678888888888865555544 6677 8888888776 4444
No 35
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.91 E-value=9e-24 Score=213.84 Aligned_cols=133 Identities=22% Similarity=0.219 Sum_probs=108.2
Q ss_pred CCceEEEEeecCCCCCC-CccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465 60 GGKVRHLGLNFEGGAPL-PMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI 138 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l 138 (432)
.++++.|+++++.+..+ +..|.++++|++|++++|++ ... .+..|..+++|++|++++ +.++.+
T Consensus 51 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l-----~~~-~~~~~~~l~~L~~L~L~~---------n~l~~l 115 (570)
T 2z63_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI-----QSL-ALGAFSGLSSLQKLVAVE---------TNLASL 115 (570)
T ss_dssp CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC-----CEE-CTTTTTTCTTCCEEECTT---------SCCCCS
T ss_pred CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcC-----Ccc-CHhhhcCccccccccccc---------cccccC
Confidence 57899999999988885 45789999999999999954 332 456689999999999999 667777
Q ss_pred Cc-cccCCccccEEEeCCccccc--cchhhhccCCccEEecccccccccCChhhhccccc----ceEEcCCCCccc
Q 037465 139 PE-NVGKLIHLKYLNLSGLCIKR--LPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNM----RSLLNDNTRSLK 207 (432)
Q Consensus 139 p~-~~~~l~~L~~L~L~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L----~~L~l~~~~~~~ 207 (432)
+. .++++++|++|++++|.+.. +|..++++++|++|++++|......|..++.+++| +.|++++|....
T Consensus 116 ~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~ 191 (570)
T 2z63_A 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191 (570)
T ss_dssp TTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE
T ss_pred CCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCcee
Confidence 54 68999999999999999875 78899999999999999998544445667777777 777887775433
No 36
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=8.5e-24 Score=213.08 Aligned_cols=282 Identities=18% Similarity=0.122 Sum_probs=190.9
Q ss_pred EEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-CccccC
Q 037465 66 LGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-PENVGK 144 (432)
Q Consensus 66 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-p~~~~~ 144 (432)
.+..++++..+|..+. ++|++|++++|.+ ++. .+..+..+++|++|++++ +.++.+ |..+..
T Consensus 10 c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l-----~~~-~~~~~~~l~~L~~L~Ls~---------n~i~~~~~~~~~~ 72 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLT--AAMKSLDLSFNKI-----TYI-GHGDLRACANLQVLILKS---------SRINTIEGDAFYS 72 (549)
T ss_dssp EECTTSCCSSCCSCCC--TTCCEEECCSSCC-----CEE-CSSTTSSCTTCCEEECTT---------SCCCEECTTTTTT
T ss_pred EECCCCccccccccCC--CCccEEECcCCcc-----Ccc-ChhhhhcCCcccEEECCC---------CCcCccChhhccc
Confidence 4566778888888764 7899999999954 333 455689999999999999 667776 467999
Q ss_pred CccccEEEeCCccccccchh-hhccCCccEEecccccccc-cCChhhhcccccceEEcCCCCccccCC-ccCCccccccc
Q 037465 145 LIHLKYLNLSGLCIKRLPET-LCELYNLQKLDIRWCRNLR-ELPAGIGKLMNMRSLLNDNTRSLKYMP-IGISKLTSLRT 221 (432)
Q Consensus 145 l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~ 221 (432)
+++|++|++++|.+..+|+. ++.+++|++|++++|.... ..|..++.+++|++|++++|...+.+| ..++.+++|++
T Consensus 73 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 152 (549)
T 2z81_A 73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE 152 (549)
T ss_dssp CTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred cccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCe
Confidence 99999999999999988765 9999999999999998433 456788999999999999997677776 57899999999
Q ss_pred ccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHH-------
Q 037465 222 LGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEER------- 294 (432)
Q Consensus 222 L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~------- 294 (432)
|++.++.... ..+..++.+++|+.|++..... ...+ ...+..+++|+.|++++|.+.+......
T Consensus 153 L~L~~n~l~~-----~~~~~l~~l~~L~~L~l~~n~~-~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 223 (549)
T 2z81_A 153 LEIKALSLRN-----YQSQSLKSIRDIHHLTLHLSES-AFLL---EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSS 223 (549)
T ss_dssp EEEEETTCCE-----ECTTTTTTCSEEEEEEEECSBS-TTHH---HHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCC
T ss_pred eeccCCcccc-----cChhhhhccccCceEecccCcc-cccc---hhhHhhcccccEEEccCCccccccccccchhhhhh
Confidence 9999887652 3445555666666666554321 1111 1111234444444444444322100000
Q ss_pred ----------hhhhhhhHhhhh------------------------------cC--------------------------
Q 037465 295 ----------RRKKEKDEQLLK------------------------------AL-------------------------- 308 (432)
Q Consensus 295 ----------~~~~~~~~~~~~------------------------------~l-------------------------- 308 (432)
.........+.. .+
T Consensus 224 ~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~ 303 (549)
T 2z81_A 224 PMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS 303 (549)
T ss_dssp CCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCC
T ss_pred cccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccch
Confidence 000000000000 00
Q ss_pred ---CCCCCCcEEEEeeeCCCCCChhhh-ccCCCcEEEEeCCCCCCCCC----CCCCcc-cceEeccccccccccC
Q 037465 309 ---QPPVNVEELWIVYYGGNIFPKWLT-SLTNLRNLYLSSCFNCEHLP----PLGKLP-LEKLTLYNLKSVKRVG 374 (432)
Q Consensus 309 ---~~~~~L~~L~l~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~l~----~~~~l~-L~~L~l~~c~~l~~~~ 374 (432)
...++|++|++.++....+|.++. .+++|+.|++++|...+.+| .++.++ |+.|++++|. ++.++
T Consensus 304 ~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~ 377 (549)
T 2z81_A 304 TVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQ 377 (549)
T ss_dssp HHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHH
T ss_pred hhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccc
Confidence 112457777777777767777764 78899999999986655332 356788 8888888886 66554
No 37
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=2.5e-23 Score=195.56 Aligned_cols=90 Identities=26% Similarity=0.439 Sum_probs=47.3
Q ss_pred CcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccccccch
Q 037465 84 DRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLPE 163 (432)
Q Consensus 84 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~ 163 (432)
+++++|++++|.+ . . ++..+..+++|++|++++ +.+..+|..++++++|++|++++|.+..+|.
T Consensus 81 ~~l~~L~L~~n~l-----~-~-lp~~l~~l~~L~~L~L~~---------n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~ 144 (328)
T 4fcg_A 81 PGRVALELRSVPL-----P-Q-FPDQAFRLSHLQHMTIDA---------AGLMELPDTMQQFAGLETLTLARNPLRALPA 144 (328)
T ss_dssp TTCCEEEEESSCC-----S-S-CCSCGGGGTTCSEEEEES---------SCCCCCCSCGGGGTTCSEEEEESCCCCCCCG
T ss_pred cceeEEEccCCCc-----h-h-cChhhhhCCCCCEEECCC---------CCccchhHHHhccCCCCEEECCCCccccCcH
Confidence 4555555555532 1 1 233344455555555555 3444555555555555555555555555555
Q ss_pred hhhccCCccEEecccccccccCChhh
Q 037465 164 TLCELYNLQKLDIRWCRNLRELPAGI 189 (432)
Q Consensus 164 ~i~~l~~L~~L~l~~~~~~~~lp~~i 189 (432)
.++.+++|++|++++|...+.+|..+
T Consensus 145 ~l~~l~~L~~L~L~~n~~~~~~p~~~ 170 (328)
T 4fcg_A 145 SIASLNRLRELSIRACPELTELPEPL 170 (328)
T ss_dssp GGGGCTTCCEEEEEEETTCCCCCSCS
T ss_pred HHhcCcCCCEEECCCCCCccccChhH
Confidence 55555555555555555455555443
No 38
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=1e-22 Score=215.01 Aligned_cols=281 Identities=15% Similarity=0.088 Sum_probs=212.1
Q ss_pred CCceEEEEeecCCCCC-C-CccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccc
Q 037465 60 GGKVRHLGLNFEGGAP-L-PMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITE 137 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~-~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~ 137 (432)
..+++.|+++++.... + |..|.++++|++|++++|.+ ... .+..|..+++|++|++++| .+..
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l-----~~~-~p~~~~~l~~L~~L~Ls~n---------~l~~ 111 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI-----YFL-HPDAFQGLFHLFELRLYFC---------GLSD 111 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCC-----CEE-CTTSSCSCSSCCCEECTTC---------CCSS
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcC-----ccc-CHhHccCCcccCEeeCcCC---------CCCc
Confidence 6789999999985433 4 77899999999999999954 333 4666999999999999994 4544
Q ss_pred -cCcc--ccCCccccEEEeCCccccccc--hhhhccCCccEEecccccccccCChhhhcc--cccceEEcCCCCccccCC
Q 037465 138 -IPEN--VGKLIHLKYLNLSGLCIKRLP--ETLCELYNLQKLDIRWCRNLRELPAGIGKL--MNMRSLLNDNTRSLKYMP 210 (432)
Q Consensus 138 -lp~~--~~~l~~L~~L~L~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l--~~L~~L~l~~~~~~~~~p 210 (432)
+|.. ++++++|++|++++|.+..++ ..++++++|++|++++|......+..+..+ ++|+.|+++.|......|
T Consensus 112 ~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~ 191 (844)
T 3j0a_A 112 AVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS 191 (844)
T ss_dssp CCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCC
T ss_pred ccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccc
Confidence 4554 889999999999999988653 579999999999999998667777888877 899999999998877777
Q ss_pred ccCCcccc------cccccceEecccccCC--CC-----------------------------cCcccccc--CccCCce
Q 037465 211 IGISKLTS------LRTLGKFVVGGGVDGS--ST-----------------------------CRLESLKN--LQLLREC 251 (432)
Q Consensus 211 ~~l~~l~~------L~~L~l~~~~~~~~~~--~~-----------------------------~~~~~l~~--l~~L~~L 251 (432)
..++.+++ |+.|+++++....... .. .....+.. .++|+.|
T Consensus 192 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L 271 (844)
T 3j0a_A 192 VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHL 271 (844)
T ss_dssp CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEE
T ss_pred cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEE
Confidence 77776665 9999998874332100 00 00011111 2567778
Q ss_pred eeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCC-Chh
Q 037465 252 GIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIF-PKW 330 (432)
Q Consensus 252 ~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~ 330 (432)
++++..- ....+..+..+++|+.|++++|.+ ....+..+..+++|++|++++|....+ |.+
T Consensus 272 ~Ls~n~l----~~~~~~~~~~l~~L~~L~L~~n~i--------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 333 (844)
T 3j0a_A 272 DLSHGFV----FSLNSRVFETLKDLKVLNLAYNKI--------------NKIADEAFYGLDNLQVLNLSYNLLGELYSSN 333 (844)
T ss_dssp ECTTCCC----CEECSCCSSSCCCCCEEEEESCCC--------------CEECTTTTTTCSSCCEEEEESCCCSCCCSCS
T ss_pred ECCCCcc----cccChhhhhcCCCCCEEECCCCcC--------------CCCChHHhcCCCCCCEEECCCCCCCccCHHH
Confidence 8776432 223355678899999999999983 333455678889999999999887665 667
Q ss_pred hhccCCCcEEEEeCCCCCCCCC-CCCCcc-cceEeccccccccccC
Q 037465 331 LTSLTNLRNLYLSSCFNCEHLP-PLGKLP-LEKLTLYNLKSVKRVG 374 (432)
Q Consensus 331 l~~l~~L~~L~l~~~~~~~~l~-~~~~l~-L~~L~l~~c~~l~~~~ 374 (432)
+..+++|+.|++++|......+ .++.++ |+.|++++|. ++.++
T Consensus 334 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~ 378 (844)
T 3j0a_A 334 FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA-LTTIH 378 (844)
T ss_dssp CSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC-SCCCS
T ss_pred hcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC-CCccc
Confidence 8899999999999995543333 477899 9999999987 66554
No 39
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=1e-22 Score=191.74 Aligned_cols=292 Identities=18% Similarity=0.174 Sum_probs=217.7
Q ss_pred cccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCc-cccCCccccEEEeCCcccccc-c
Q 037465 85 RLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE-NVGKLIHLKYLNLSGLCIKRL-P 162 (432)
Q Consensus 85 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~l-p 162 (432)
++++++++++.++. +|..+ .++|++|++++ +.++.++. .+.++++|++|++++|.+..+ |
T Consensus 32 ~l~~l~~~~~~l~~-------lp~~~--~~~l~~L~L~~---------n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (330)
T 1xku_A 32 HLRVVQCSDLGLEK-------VPKDL--PPDTALLDLQN---------NKITEIKDGDFKNLKNLHTLILINNKISKISP 93 (330)
T ss_dssp ETTEEECTTSCCCS-------CCCSC--CTTCCEEECCS---------SCCCCBCTTTTTTCTTCCEEECCSSCCCCBCT
T ss_pred CCeEEEecCCCccc-------cCccC--CCCCeEEECCC---------CcCCEeChhhhccCCCCCEEECCCCcCCeeCH
Confidence 68999999885422 33222 36899999999 67877754 789999999999999999877 6
Q ss_pred hhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCcCcccc
Q 037465 163 ETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESL 242 (432)
Q Consensus 163 ~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l 242 (432)
..+..+++|++|++++|. +..+|..+. ++|++|++++|......+..+..+++|++|++..+..... ......+
T Consensus 94 ~~~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~ 167 (330)
T 1xku_A 94 GAFAPLVKLERLYLSKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS---GIENGAF 167 (330)
T ss_dssp TTTTTCTTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG---GBCTTGG
T ss_pred HHhcCCCCCCEEECCCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc---CcChhhc
Confidence 789999999999999998 778887665 7999999999966555556688999999999998876421 2345678
Q ss_pred ccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeee
Q 037465 243 KNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYY 322 (432)
Q Consensus 243 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 322 (432)
..+++|+.|+++++.- ...+ ..+ .++|++|++++|.+ ....+..+..+++|++|++++|
T Consensus 168 ~~l~~L~~L~l~~n~l-~~l~----~~~--~~~L~~L~l~~n~l--------------~~~~~~~~~~l~~L~~L~Ls~n 226 (330)
T 1xku_A 168 QGMKKLSYIRIADTNI-TTIP----QGL--PPSLTELHLDGNKI--------------TKVDAASLKGLNNLAKLGLSFN 226 (330)
T ss_dssp GGCTTCCEEECCSSCC-CSCC----SSC--CTTCSEEECTTSCC--------------CEECTGGGTTCTTCCEEECCSS
T ss_pred cCCCCcCEEECCCCcc-ccCC----ccc--cccCCEEECCCCcC--------------CccCHHHhcCCCCCCEEECCCC
Confidence 8899999999987543 2221 111 27999999999983 2333456788999999999998
Q ss_pred CCCCCC-hhhhccCCCcEEEEeCCCCCCCCC-CCCCcc-cceEeccccccccccCccccCCCCCCCCCCCCCCCCcceEE
Q 037465 323 GGNIFP-KWLTSLTNLRNLYLSSCFNCEHLP-PLGKLP-LEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELS 399 (432)
Q Consensus 323 ~~~~~~-~~l~~l~~L~~L~l~~~~~~~~l~-~~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 399 (432)
....++ .++..+++|+.|++++|... .+| .+..++ |++|++++|. ++.++...++... +....+.|+.|+
T Consensus 227 ~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~-----~~~~~~~l~~l~ 299 (330)
T 1xku_A 227 SISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPG-----YNTKKASYSGVS 299 (330)
T ss_dssp CCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSS-----CCTTSCCCSEEE
T ss_pred cCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCc-CCccChhhcCCcc-----cccccccccceE
Confidence 887654 47889999999999999655 555 588899 9999999998 8888876654321 112367899999
Q ss_pred EeCCccccccccCCCCCCcccccCCCCccCCC
Q 037465 400 IEGCPLLENRYREGKGEDWHKISHIPHIQMSP 431 (432)
Q Consensus 400 i~~cp~L~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (432)
++++|--..... ...+.....+..+.+++
T Consensus 300 l~~N~~~~~~i~---~~~f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 300 LFSNPVQYWEIQ---PSTFRCVYVRAAVQLGN 328 (330)
T ss_dssp CCSSSSCGGGSC---GGGGTTCCCGGGEEC--
T ss_pred eecCcccccccC---ccccccccceeEEEecc
Confidence 999985321111 12344445555555554
No 40
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.90 E-value=1.1e-22 Score=191.81 Aligned_cols=291 Identities=20% Similarity=0.149 Sum_probs=215.3
Q ss_pred cccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-CccccCCccccEEEeCCcccccc-c
Q 037465 85 RLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-PENVGKLIHLKYLNLSGLCIKRL-P 162 (432)
Q Consensus 85 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~L~~~~l~~l-p 162 (432)
+++.++++++.++ . +|..+ .++|++|++++ +.++.+ |..+.++++|++|++++|.+..+ |
T Consensus 34 ~l~~l~~~~~~l~------~-ip~~~--~~~l~~L~l~~---------n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 95 (332)
T 2ft3_A 34 HLRVVQCSDLGLK------A-VPKEI--SPDTTLLDLQN---------NDISELRKDDFKGLQHLYALVLVNNKISKIHE 95 (332)
T ss_dssp ETTEEECCSSCCS------S-CCSCC--CTTCCEEECCS---------SCCCEECTTTTTTCTTCCEEECCSSCCCEECG
T ss_pred cCCEEECCCCCcc------c-cCCCC--CCCCeEEECCC---------CcCCccCHhHhhCCCCCcEEECCCCccCccCH
Confidence 6899999998542 2 33323 37899999999 667777 55799999999999999999877 6
Q ss_pred hhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCcCcccc
Q 037465 163 ETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESL 242 (432)
Q Consensus 163 ~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l 242 (432)
..+..+++|++|++++|. +..+|..+. ++|++|++++|......+..+..+++|++|++.++..... ...+..+
T Consensus 96 ~~~~~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~ 169 (332)
T 2ft3_A 96 KAFSPLRKLQKLYISKNH-LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS---GFEPGAF 169 (332)
T ss_dssp GGSTTCTTCCEEECCSSC-CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG---GSCTTSS
T ss_pred hHhhCcCCCCEEECCCCc-CCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC---CCCcccc
Confidence 689999999999999998 778887665 7999999999965544445688999999999998876521 2234555
Q ss_pred ccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeee
Q 037465 243 KNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYY 322 (432)
Q Consensus 243 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 322 (432)
..+ +|+.+++++..- ... +..+ .++|++|++++|.+ ....+..+..+++|++|++++|
T Consensus 170 ~~l-~L~~L~l~~n~l-~~l----~~~~--~~~L~~L~l~~n~i--------------~~~~~~~l~~l~~L~~L~L~~N 227 (332)
T 2ft3_A 170 DGL-KLNYLRISEAKL-TGI----PKDL--PETLNELHLDHNKI--------------QAIELEDLLRYSKLYRLGLGHN 227 (332)
T ss_dssp CSC-CCSCCBCCSSBC-SSC----CSSS--CSSCSCCBCCSSCC--------------CCCCTTSSTTCTTCSCCBCCSS
T ss_pred cCC-ccCEEECcCCCC-Ccc----Cccc--cCCCCEEECCCCcC--------------CccCHHHhcCCCCCCEEECCCC
Confidence 566 788988887432 221 1112 27899999999983 2333456788999999999999
Q ss_pred CCCCCC-hhhhccCCCcEEEEeCCCCCCCCC-CCCCcc-cceEeccccccccccCccccCCCCCCCCCCCCCCCCcceEE
Q 037465 323 GGNIFP-KWLTSLTNLRNLYLSSCFNCEHLP-PLGKLP-LEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELS 399 (432)
Q Consensus 323 ~~~~~~-~~l~~l~~L~~L~l~~~~~~~~l~-~~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 399 (432)
....++ .++..+++|+.|++++|... .+| .++.++ |+.|++++|. ++.++...++... +...+++|+.|+
T Consensus 228 ~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~-----~~~~~~~l~~L~ 300 (332)
T 2ft3_A 228 QIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVG-----FGVKRAYYNGIS 300 (332)
T ss_dssp CCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSS-----CCSSSCCBSEEE
T ss_pred cCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCC-CCccChhHccccc-----cccccccccceE
Confidence 887765 47889999999999999655 565 578899 9999999997 8888876554321 112368899999
Q ss_pred EeCCccccccccCCCCCCcccccCCCCccCCC
Q 037465 400 IEGCPLLENRYREGKGEDWHKISHIPHIQMSP 431 (432)
Q Consensus 400 i~~cp~L~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (432)
+.++|........ ..+..+.++..+.+++
T Consensus 301 l~~N~~~~~~~~~---~~~~~l~~L~~l~l~~ 329 (332)
T 2ft3_A 301 LFNNPVPYWEVQP---ATFRCVTDRLAIQFGN 329 (332)
T ss_dssp CCSSSSCGGGSCG---GGGTTBCCSTTEEC--
T ss_pred eecCcccccccCc---ccccccchhhhhhccc
Confidence 9999854222211 2344455666665554
No 41
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=1.6e-23 Score=196.78 Aligned_cols=218 Identities=25% Similarity=0.343 Sum_probs=117.1
Q ss_pred CceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCc
Q 037465 61 GKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE 140 (432)
Q Consensus 61 ~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~ 140 (432)
.+++.|++.++.+..+|..+.++++|++|++++|.+ . . ++..+..+++|++|++++ +.+..+|.
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l-----~-~-lp~~~~~l~~L~~L~Ls~---------n~l~~lp~ 144 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGL-----M-E-LPDTMQQFAGLETLTLAR---------NPLRALPA 144 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCC-----C-C-CCSCGGGGTTCSEEEEES---------CCCCCCCG
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCc-----c-c-hhHHHhccCCCCEEECCC---------CccccCcH
Confidence 455556666666555555555566666666666532 2 2 333355566666666665 44445555
Q ss_pred cccCCccccEEEeCCcc-ccccchhhhc---------cCCccEEecccccccccCChhhhcccccceEEcCCCCccccCC
Q 037465 141 NVGKLIHLKYLNLSGLC-IKRLPETLCE---------LYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMP 210 (432)
Q Consensus 141 ~~~~l~~L~~L~L~~~~-l~~lp~~i~~---------l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p 210 (432)
.++++++|++|++++|. +..+|..+.. +++|++|++++|. +..+|..++.+++|++|++++|.. ..+|
T Consensus 145 ~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l-~~l~ 222 (328)
T 4fcg_A 145 SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPL-SALG 222 (328)
T ss_dssp GGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCC-CCCC
T ss_pred HHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCC-CcCc
Confidence 55566666666666554 4455544432 5555555555554 335555555555555555555532 2344
Q ss_pred ccCCcccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCc
Q 037465 211 IGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGE 290 (432)
Q Consensus 211 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 290 (432)
..++.+++|++|++.+|...
T Consensus 223 ~~l~~l~~L~~L~Ls~n~~~------------------------------------------------------------ 242 (328)
T 4fcg_A 223 PAIHHLPKLEELDLRGCTAL------------------------------------------------------------ 242 (328)
T ss_dssp GGGGGCTTCCEEECTTCTTC------------------------------------------------------------
T ss_pred hhhccCCCCCEEECcCCcch------------------------------------------------------------
Confidence 44444444444444433322
Q ss_pred hHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCC-CCCChhhhccCCCcEEEEeCCCCCCCCC-CCCCcc-cceEecccc
Q 037465 291 DEERRRKKEKDEQLLKALQPPVNVEELWIVYYGG-NIFPKWLTSLTNLRNLYLSSCFNCEHLP-PLGKLP-LEKLTLYNL 367 (432)
Q Consensus 291 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~l~-~~~~l~-L~~L~l~~c 367 (432)
...+..+..+++|++|++++|.. ..+|.++..+++|+.|++++|...+.+| .++.++ |+.+++...
T Consensus 243 -----------~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 243 -----------RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp -----------CBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred -----------hhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 22233344444444444444332 2346666677777777777777766666 366677 777776644
No 42
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=3.7e-22 Score=195.89 Aligned_cols=267 Identities=18% Similarity=0.109 Sum_probs=199.4
Q ss_pred CccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCc
Q 037465 77 PMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGL 156 (432)
Q Consensus 77 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~ 156 (432)
+..+.++++|++|++++|.++ + ++ .+..+++|++|++++ +.++.+| ++.+++|++|++++|
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~-----~--~~-~l~~l~~L~~L~Ls~---------n~l~~~~--~~~l~~L~~L~Ls~N 95 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSIT-----D--MT-GIEKLTGLTKLICTS---------NNITTLD--LSQNTNLTYLACDSN 95 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCC-----C--CT-TGGGCTTCSEEECCS---------SCCSCCC--CTTCTTCSEEECCSS
T ss_pred ccChhHcCCCCEEEccCCCcc-----c--Ch-hhcccCCCCEEEccC---------CcCCeEc--cccCCCCCEEECcCC
Confidence 456788999999999999553 3 34 388999999999999 6677775 889999999999999
Q ss_pred cccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCC
Q 037465 157 CIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSST 236 (432)
Q Consensus 157 ~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~ 236 (432)
.+..+| ++.+++|++|++++|. +..+| ++.+++|++|++++|.... ++ ++.+++|++|++..+....
T Consensus 96 ~l~~~~--~~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~----- 162 (457)
T 3bz5_A 96 KLTNLD--VTPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKIT----- 162 (457)
T ss_dssp CCSCCC--CTTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCC-----
T ss_pred CCceee--cCCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccc-----
Confidence 999885 8899999999999998 66665 8899999999999996544 43 7899999999998885442
Q ss_pred cCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcE
Q 037465 237 CRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEE 316 (432)
Q Consensus 237 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 316 (432)
.. .+..+++|+.|+++++.- ... .+..+++|+.|++++|.+.+ . .+..+++|+.
T Consensus 163 -~~-~~~~l~~L~~L~ls~n~l-~~l------~l~~l~~L~~L~l~~N~l~~---------------~--~l~~l~~L~~ 216 (457)
T 3bz5_A 163 -KL-DVTPQTQLTTLDCSFNKI-TEL------DVSQNKLLNRLNCDTNNITK---------------L--DLNQNIQLTF 216 (457)
T ss_dssp -CC-CCTTCTTCCEEECCSSCC-CCC------CCTTCTTCCEEECCSSCCSC---------------C--CCTTCTTCSE
T ss_pred -cc-ccccCCcCCEEECCCCcc-cee------ccccCCCCCEEECcCCcCCe---------------e--ccccCCCCCE
Confidence 11 477889999999988532 221 27788999999999998321 1 3678899999
Q ss_pred EEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCCCCCCcc-cceEeccccccccccCccccCCCCCCCCCCCCCCCCc
Q 037465 317 LWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSS 395 (432)
Q Consensus 317 L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L 395 (432)
|++++|....+| +..+++|+.|++++|...+ +| .+.++ |+.|+++++. ++.+....-. ....+ |.+.+++|
T Consensus 217 L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~-~~-~~~l~~L~~L~l~~n~-L~~L~l~~n~--~~~~~-~~~~l~~L 288 (457)
T 3bz5_A 217 LDCSSNKLTEID--VTPLTQLTYFDCSVNPLTE-LD-VSTLSKLTTLHCIQTD-LLEIDLTHNT--QLIYF-QAEGCRKI 288 (457)
T ss_dssp EECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC-CTTCTTCCEEECTTCC-CSCCCCTTCT--TCCEE-ECTTCTTC
T ss_pred EECcCCcccccC--ccccCCCCEEEeeCCcCCC-cC-HHHCCCCCEEeccCCC-CCEEECCCCc--cCCcc-cccccccC
Confidence 999999998877 7799999999999996544 44 45677 7766665543 4444221100 00000 22345666
Q ss_pred ceEEEeCCcccccc
Q 037465 396 SELSIEGCPLLENR 409 (432)
Q Consensus 396 ~~L~i~~cp~L~~~ 409 (432)
+.|++++|+.++.+
T Consensus 289 ~~L~Ls~n~~l~~l 302 (457)
T 3bz5_A 289 KELDVTHNTQLYLL 302 (457)
T ss_dssp CCCCCTTCTTCCEE
T ss_pred CEEECCCCccccee
Confidence 66666666554444
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=2.2e-22 Score=204.56 Aligned_cols=261 Identities=19% Similarity=0.105 Sum_probs=204.4
Q ss_pred CCceEEEEeecCCCCCCC-ccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465 60 GGKVRHLGLNFEGGAPLP-MSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI 138 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l 138 (432)
.++++.|++.++.+..++ ..|..+++|++|++++|.+ .+. ++..|..+++|++|++++ +.++.+
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-----~~~-~~~~~~~l~~L~~L~L~~---------n~l~~l 138 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI-----RYL-PPHVFQNVPLLTVLVLER---------NDLSSL 138 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-----CCC-CTTTTTTCTTCCEEECCS---------SCCCCC
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcC-----CCC-CHHHHcCCCCCCEEEeeC---------CCCCCC
Confidence 468999999999988855 4889999999999999954 343 566689999999999999 678888
Q ss_pred Ccc-ccCCccccEEEeCCccccccch-hhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccc---------
Q 037465 139 PEN-VGKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLK--------- 207 (432)
Q Consensus 139 p~~-~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--------- 207 (432)
|.. ++.+++|++|++++|.+..+++ .++.+++|++|++++|. +..++ ++.+++|+.|++++|....
T Consensus 139 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~ 215 (597)
T 3oja_B 139 PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEE 215 (597)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSE
T ss_pred CHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC--hhhhhhhhhhhcccCccccccCCchhhe
Confidence 766 5899999999999999887765 68999999999999998 55444 4556677776666663321
Q ss_pred ---------cCCccCCcccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCce
Q 037465 208 ---------YMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLC 278 (432)
Q Consensus 208 ---------~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~ 278 (432)
.++.. ..++|+.|++.++... .+..+..+++|+.|+++++. .....+..+..+++|+.
T Consensus 216 L~ls~n~l~~~~~~--~~~~L~~L~L~~n~l~-------~~~~l~~l~~L~~L~Ls~N~----l~~~~~~~~~~l~~L~~ 282 (597)
T 3oja_B 216 LDASHNSINVVRGP--VNVELTILKLQHNNLT-------DTAWLLNYPGLVEVDLSYNE----LEKIMYHPFVKMQRLER 282 (597)
T ss_dssp EECCSSCCCEEECS--CCSCCCEEECCSSCCC-------CCGGGGGCTTCSEEECCSSC----CCEEESGGGTTCSSCCE
T ss_pred eeccCCcccccccc--cCCCCCEEECCCCCCC-------CChhhccCCCCCEEECCCCc----cCCCCHHHhcCccCCCE
Confidence 11111 1246777777666554 24668889999999999843 33344567888999999
Q ss_pred EEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCCCCCCcc
Q 037465 279 LHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP 358 (432)
Q Consensus 279 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~l~ 358 (432)
|++++|.+ ..++..+..+++|+.|++++|....+|.++..+++|+.|++++|.. ..++ ++.++
T Consensus 283 L~Ls~N~l---------------~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l-~~~~-~~~~~ 345 (597)
T 3oja_B 283 LYISNNRL---------------VALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI-VTLK-LSTHH 345 (597)
T ss_dssp EECTTSCC---------------CEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCC-CCCC-CCTTC
T ss_pred EECCCCCC---------------CCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCC-CCcC-hhhcC
Confidence 99999983 2244556778999999999999999999999999999999999965 4444 67899
Q ss_pred -cceEeccccc
Q 037465 359 -LEKLTLYNLK 368 (432)
Q Consensus 359 -L~~L~l~~c~ 368 (432)
|+.|++++|+
T Consensus 346 ~L~~L~l~~N~ 356 (597)
T 3oja_B 346 TLKNLTLSHND 356 (597)
T ss_dssp CCSEEECCSSC
T ss_pred CCCEEEeeCCC
Confidence 9999999987
No 44
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=6e-22 Score=204.73 Aligned_cols=307 Identities=17% Similarity=0.105 Sum_probs=154.7
Q ss_pred ceEEEEeecCCCCCC-CccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCc
Q 037465 62 KVRHLGLNFEGGAPL-PMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE 140 (432)
Q Consensus 62 ~i~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~ 140 (432)
+++.|+++++.+..+ +..+..+++|++|++++|.+ .+. .+..+..+++|++|++++|..... -....+|.
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-----~~~-~~~~~~~l~~L~~L~L~~~~~~~~---~~~~~lp~ 319 (680)
T 1ziw_A 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI-----QHL-FSHSLHGLFNVRYLNLKRSFTKQS---ISLASLPK 319 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCB-----SEE-CTTTTTTCTTCCEEECTTCBCCC---------CCE
T ss_pred CCCEEECCCCCcCccCcccccCcccccEeeCCCCcc-----Ccc-ChhhhcCCCCccEEeccchhhhcc---cccccccc
Confidence 366666666665553 34556666666666666632 222 344466666666666665310000 00112332
Q ss_pred ----cccCCccccEEEeCCccccccch-hhhccCCccEEecccccc-cccCChh-hhc--ccccceEEcCCCCccccCCc
Q 037465 141 ----NVGKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRN-LRELPAG-IGK--LMNMRSLLNDNTRSLKYMPI 211 (432)
Q Consensus 141 ----~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~-~~~lp~~-i~~--l~~L~~L~l~~~~~~~~~p~ 211 (432)
.+..+++|++|++++|.+..+++ .+..+++|++|++++|.. ...++.. +.. .++|+.|++++|......|.
T Consensus 320 i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~ 399 (680)
T 1ziw_A 320 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD 399 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTT
T ss_pred cChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChh
Confidence 56667777777777777665543 466677777777766541 1122211 111 13455555555544444445
Q ss_pred cCCcccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCC--------------------c--hhhhhcc
Q 037465 212 GISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSH--------------------L--DEAERLQ 269 (432)
Q Consensus 212 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--------------------~--~~~~~~~ 269 (432)
.+..+++|+.|++.++.... ......+..+++|+.++++++.-... . ....+..
T Consensus 400 ~~~~l~~L~~L~L~~N~l~~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~ 475 (680)
T 1ziw_A 400 AFSWLGHLEVLDLGLNEIGQ----ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP 475 (680)
T ss_dssp TTTTCTTCCEEECCSSCCEE----ECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCT
T ss_pred hhhCCCCCCEEeCCCCcCcc----ccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcc
Confidence 55556666666665554432 11113344445555555544221000 0 0112334
Q ss_pred cccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCCC---------hhhhccCCCcEE
Q 037465 270 LYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFP---------KWLTSLTNLRNL 340 (432)
Q Consensus 270 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~---------~~l~~l~~L~~L 340 (432)
+..+++|+.|++++|.+ .......+..+++|+.|++++|....++ ..+..+++|+.|
T Consensus 476 ~~~l~~L~~L~Ls~N~l--------------~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L 541 (680)
T 1ziw_A 476 FQPLRNLTILDLSNNNI--------------ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541 (680)
T ss_dssp TTTCTTCCEEECCSSCC--------------CCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEE
T ss_pred cccCCCCCEEECCCCCC--------------CcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEE
Confidence 45555666666666552 1112233455566666666665544321 124456666666
Q ss_pred EEeCCCCCCCCC--CCCCcc-cceEeccccccccccCccccCCCCCCCCCCCCCCCCcceEEEeCCcccccc
Q 037465 341 YLSSCFNCEHLP--PLGKLP-LEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELSIEGCPLLENR 409 (432)
Q Consensus 341 ~l~~~~~~~~l~--~~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~cp~L~~~ 409 (432)
++++|... .+| .++.++ |+.|++++|. ++.++...+. .+++|+.|++++| .++.+
T Consensus 542 ~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~-----------~l~~L~~L~L~~N-~l~~~ 599 (680)
T 1ziw_A 542 NLESNGFD-EIPVEVFKDLFELKIIDLGLNN-LNTLPASVFN-----------NQVSLKSLNLQKN-LITSV 599 (680)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTT-----------TCTTCCEEECTTS-CCCBC
T ss_pred ECCCCCCC-CCCHHHcccccCcceeECCCCC-CCcCCHhHhC-----------CCCCCCEEECCCC-cCCcc
Confidence 66666333 343 255666 6666666655 5555544332 3677788888777 34433
No 45
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.88 E-value=5.4e-22 Score=188.56 Aligned_cols=264 Identities=18% Similarity=0.119 Sum_probs=201.8
Q ss_pred EEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-CccccC
Q 037465 66 LGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-PENVGK 144 (432)
Q Consensus 66 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-p~~~~~ 144 (432)
.+.+++.++.+|..+. ++|++|++++|.+ .. +.+..+..+++|++|++++ +.++.+ |..+.+
T Consensus 36 c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i-----~~-~~~~~~~~l~~L~~L~L~~---------n~l~~~~~~~~~~ 98 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT--EAVKSLDLSNNRI-----TY-ISNSDLQRCVNLQALVLTS---------NGINTIEEDSFSS 98 (353)
T ss_dssp EECCSTTCSSCCTTCC--TTCCEEECTTSCC-----CE-ECTTTTTTCTTCCEEECTT---------SCCCEECTTTTTT
T ss_pred eeCCCCCccccccccc--ccCcEEECCCCcC-----cc-cCHHHhccCCCCCEEECCC---------CccCccCHhhcCC
Confidence 6777888888888765 5899999999954 33 2444689999999999999 667777 567899
Q ss_pred CccccEEEeCCccccccchh-hhccCCccEEecccccccccCCh--hhhcccccceEEcCCCCccccC-CccCCcccccc
Q 037465 145 LIHLKYLNLSGLCIKRLPET-LCELYNLQKLDIRWCRNLRELPA--GIGKLMNMRSLLNDNTRSLKYM-PIGISKLTSLR 220 (432)
Q Consensus 145 l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~--~i~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~ 220 (432)
+++|++|++++|.+..+|.. +..+++|++|++++|. +..+|. .+..+++|+.|++++|.....+ +..++.+++|+
T Consensus 99 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 177 (353)
T 2z80_A 99 LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE 177 (353)
T ss_dssp CTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred CCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCC
Confidence 99999999999999999876 8899999999999998 667776 6788999999999999655555 46788999999
Q ss_pred cccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhh
Q 037465 221 TLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEK 300 (432)
Q Consensus 221 ~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 300 (432)
+|++.++... ...+..+..+++|+.|++++..- ... ....+..+++|+.|++++|.+.+....
T Consensus 178 ~L~l~~n~l~-----~~~~~~l~~l~~L~~L~l~~n~l-~~~---~~~~~~~~~~L~~L~L~~n~l~~~~~~-------- 240 (353)
T 2z80_A 178 ELEIDASDLQ-----SYEPKSLKSIQNVSHLILHMKQH-ILL---LEIFVDVTSSVECLELRDTDLDTFHFS-------- 240 (353)
T ss_dssp EEEEEETTCC-----EECTTTTTTCSEEEEEEEECSCS-TTH---HHHHHHHTTTEEEEEEESCBCTTCCCC--------
T ss_pred EEECCCCCcC-----ccCHHHHhccccCCeecCCCCcc-ccc---hhhhhhhcccccEEECCCCcccccccc--------
Confidence 9999988765 33466778889999999987542 222 223345688999999999985332211
Q ss_pred hHhhhhcCCCCCCCcEEEEeeeCCCC-----CChhhhccCCCcEEEEeCCCCCCCCCC--CCCcc-cceEeccccc
Q 037465 301 DEQLLKALQPPVNVEELWIVYYGGNI-----FPKWLTSLTNLRNLYLSSCFNCEHLPP--LGKLP-LEKLTLYNLK 368 (432)
Q Consensus 301 ~~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~~l~~l~~L~~L~l~~~~~~~~l~~--~~~l~-L~~L~l~~c~ 368 (432)
..........++.+++.++.... +|.++..+++|+.|++++|... .+|. ++.++ |+.|++++|+
T Consensus 241 ---~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 241 ---ELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp ---------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred ---ccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCC
Confidence 11122345678888888765543 5777889999999999999554 5553 57889 9999999887
No 46
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=2.8e-22 Score=190.55 Aligned_cols=260 Identities=17% Similarity=0.128 Sum_probs=204.4
Q ss_pred CCceEEEEeecCCCCCCCc-cccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465 60 GGKVRHLGLNFEGGAPLPM-SFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI 138 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l 138 (432)
.++++.|+++++.+..++. .+.++++|++|++++|.+ ++. .+..+..+++|++|++++ +.++.+
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l-----~~~-~~~~~~~l~~L~~L~Ls~---------n~l~~~ 115 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI-----NTI-EEDSFSSLGSLEHLDLSY---------NYLSNL 115 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC-----CEE-CTTTTTTCTTCCEEECCS---------SCCSSC
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCcc-----Ccc-CHhhcCCCCCCCEEECCC---------CcCCcC
Confidence 4589999999999998766 789999999999999954 332 455689999999999999 778888
Q ss_pred Ccc-ccCCccccEEEeCCccccccch--hhhccCCccEEecccccccccC-ChhhhcccccceEEcCCCCccccCCccCC
Q 037465 139 PEN-VGKLIHLKYLNLSGLCIKRLPE--TLCELYNLQKLDIRWCRNLREL-PAGIGKLMNMRSLLNDNTRSLKYMPIGIS 214 (432)
Q Consensus 139 p~~-~~~l~~L~~L~L~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~l~ 214 (432)
|.. +.++++|++|++++|.+..+|. .+..+++|++|++++|..+..+ +..+..+++|++|++++|......|..++
T Consensus 116 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 195 (353)
T 2z80_A 116 SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK 195 (353)
T ss_dssp CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred CHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHh
Confidence 766 8899999999999999999987 6889999999999999545555 55788999999999999987777788899
Q ss_pred cccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHH
Q 037465 215 KLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEER 294 (432)
Q Consensus 215 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 294 (432)
.+++|++|++.++.... .....+..+++|+.|++++..-.. ............+.++.++++.+.+.+.
T Consensus 196 ~l~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~~~~~~~l~~l~L~~~~l~~~----- 264 (353)
T 2z80_A 196 SIQNVSHLILHMKQHIL-----LLEIFVDVTSSVECLELRDTDLDT-FHFSELSTGETNSLIKKFTFRNVKITDE----- 264 (353)
T ss_dssp TCSEEEEEEEECSCSTT-----HHHHHHHHTTTEEEEEEESCBCTT-CCCC------CCCCCCEEEEESCBCCHH-----
T ss_pred ccccCCeecCCCCcccc-----chhhhhhhcccccEEECCCCcccc-ccccccccccccchhhccccccccccCc-----
Confidence 99999999998877542 122234457889999998743221 1111112234567788999988873221
Q ss_pred hhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCCChhh-hccCCCcEEEEeCCCCCCC
Q 037465 295 RRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWL-TSLTNLRNLYLSSCFNCEH 350 (432)
Q Consensus 295 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~ 350 (432)
....++..+..+++|+.|++++|....+|..+ ..+++|+.|++++|+....
T Consensus 265 -----~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 265 -----SLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp -----HHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred -----chhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 23456677888999999999999998888875 6899999999999975443
No 47
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.86 E-value=5.5e-21 Score=195.63 Aligned_cols=132 Identities=21% Similarity=0.263 Sum_probs=112.8
Q ss_pred CCceEEEEeecCCCCCCC-ccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465 60 GGKVRHLGLNFEGGAPLP-MSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI 138 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l 138 (432)
+..++.|+++++.+..++ ..|.++++|++|++++|.+ . .+.+.+|..+++|++|+|++ +.++.+
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i-----~-~i~~~~f~~L~~L~~L~Ls~---------N~l~~l 115 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-----Q-TIEDGAYQSLSHLSTLILTG---------NPIQSL 115 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC-----C-EECTTTTTTCTTCCEEECTT---------CCCCEE
T ss_pred CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcC-----C-CcChhHhcCCCCCCEEEccC---------CcCCCC
Confidence 568999999999999976 4799999999999999954 2 23556699999999999999 778888
Q ss_pred Cc-cccCCccccEEEeCCccccccch-hhhccCCccEEecccccccc-cCChhhhcccccceEEcCCCCcc
Q 037465 139 PE-NVGKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLR-ELPAGIGKLMNMRSLLNDNTRSL 206 (432)
Q Consensus 139 p~-~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~ 206 (432)
|. .|.++++|++|++++|.+..+|+ .++.+++|++|++++|.... .+|..++.+++|++|++++|...
T Consensus 116 ~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 65 57899999999999999998886 58999999999999998433 46788889999999999998553
No 48
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.86 E-value=1e-21 Score=182.81 Aligned_cols=240 Identities=19% Similarity=0.117 Sum_probs=155.9
Q ss_pred EEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc---Ccc
Q 037465 65 HLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI---PEN 141 (432)
Q Consensus 65 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l---p~~ 141 (432)
.+...+.++..+|..+. ++|++|++++|.+ . .+++..+..+++|++|++++ +.++.+ |..
T Consensus 11 ~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l-----~-~i~~~~~~~l~~L~~L~L~~---------n~l~~~~~~~~~ 73 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNKL-----Q-SLPHGVFDKLTQLTKLSLSS---------NGLSFKGCCSQS 73 (306)
T ss_dssp EEECCSSCCSSCCSCCC--TTCCEEECCSSCC-----C-CCCTTTTTTCTTCSEEECCS---------SCCCEEEEEEHH
T ss_pred EEEcCCCCcccCCCCCC--CCCCEEECCCCcc-----C-ccCHhHhhccccCCEEECCC---------CccCcccCcccc
Confidence 46667777777777553 6788888888854 2 22444577888888888888 445433 556
Q ss_pred ccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCC--hhhhcccccceEEcCCCCccccCCccCCccccc
Q 037465 142 VGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELP--AGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSL 219 (432)
Q Consensus 142 ~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L 219 (432)
+..+++|++|++++|.+..+|..+..+++|++|++++|. +..++ ..+..+++|++|++++|......+..+..+++|
T Consensus 74 ~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 152 (306)
T 2z66_A 74 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 152 (306)
T ss_dssp HHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTC
T ss_pred cccccccCEEECCCCccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCC
Confidence 667888888888888888888778888888888888887 54444 357778888888888886665666667777888
Q ss_pred ccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhh
Q 037465 220 RTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKE 299 (432)
Q Consensus 220 ~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 299 (432)
++|++.++.... ...+..+..+++|+.|++++ |.+
T Consensus 153 ~~L~l~~n~l~~----~~~~~~~~~l~~L~~L~Ls~----------------------------n~l------------- 187 (306)
T 2z66_A 153 EVLKMAGNSFQE----NFLPDIFTELRNLTFLDLSQ----------------------------CQL------------- 187 (306)
T ss_dssp CEEECTTCEEGG----GEECSCCTTCTTCCEEECTT----------------------------SCC-------------
T ss_pred CEEECCCCcccc----ccchhHHhhCcCCCEEECCC----------------------------CCc-------------
Confidence 888777665442 12333444555555555554 331
Q ss_pred hhHhhhhcCCCCCCCcEEEEeeeCCCCCC-hhhhccCCCcEEEEeCCCCCCCCC-CCCCcc--cceEeccccc
Q 037465 300 KDEQLLKALQPPVNVEELWIVYYGGNIFP-KWLTSLTNLRNLYLSSCFNCEHLP-PLGKLP--LEKLTLYNLK 368 (432)
Q Consensus 300 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~l~-~~~~l~--L~~L~l~~c~ 368 (432)
....+..+..+++|++|++++|....++ ..+..+++|+.|++++|...+..+ .+..+| |+.|++++|+
T Consensus 188 -~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 188 -EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp -CEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred -CCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 1111223344455555555555444433 245567777777777776555444 355663 7777777766
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.85 E-value=4.2e-21 Score=178.68 Aligned_cols=225 Identities=17% Similarity=0.076 Sum_probs=149.3
Q ss_pred CcceEEEeCCCCCCCCCCCCcccccCcc-ccCCccccEEEeCCcccccc---chhhhccCCccEEecccccccccCChhh
Q 037465 114 ACLRALVISQSSSFSHPGPNLITEIPEN-VGKLIHLKYLNLSGLCIKRL---PETLCELYNLQKLDIRWCRNLRELPAGI 189 (432)
Q Consensus 114 ~~L~~L~L~~~~~~~~~~~~~~~~lp~~-~~~l~~L~~L~L~~~~l~~l---p~~i~~l~~L~~L~l~~~~~~~~lp~~i 189 (432)
++|++|++++ +.++.+|.. +.++++|++|++++|.+..+ |..+..+++|++|++++|. +..+|..+
T Consensus 28 ~~l~~L~L~~---------n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~ 97 (306)
T 2z66_A 28 SSATRLELES---------NKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNF 97 (306)
T ss_dssp TTCCEEECCS---------SCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEE
T ss_pred CCCCEEECCC---------CccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhc
Confidence 5677777777 556666544 46677777777777766543 4556666777777777766 55566666
Q ss_pred hcccccceEEcCCCCccccCC-ccCCcccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhc
Q 037465 190 GKLMNMRSLLNDNTRSLKYMP-IGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERL 268 (432)
Q Consensus 190 ~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 268 (432)
..+++|++|++++|......+ ..+..+++|++|++.++... ...+.
T Consensus 98 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~---------------------------------~~~~~ 144 (306)
T 2z66_A 98 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR---------------------------------VAFNG 144 (306)
T ss_dssp ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCE---------------------------------ECSTT
T ss_pred CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCC---------------------------------ccchh
Confidence 666777777776663322221 23445555555555443322 11223
Q ss_pred ccccccCCceEEEeeccccCCchHHHhhhhhhhH-hhhhcCCCCCCCcEEEEeeeCCCCC-ChhhhccCCCcEEEEeCCC
Q 037465 269 QLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDE-QLLKALQPPVNVEELWIVYYGGNIF-PKWLTSLTNLRNLYLSSCF 346 (432)
Q Consensus 269 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~ 346 (432)
.+..+++|++|++++|.+ .. ..+..+..+++|++|++++|....+ |.++..+++|+.|++++|.
T Consensus 145 ~~~~l~~L~~L~l~~n~l--------------~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 210 (306)
T 2z66_A 145 IFNGLSSLEVLKMAGNSF--------------QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 210 (306)
T ss_dssp TTTTCTTCCEEECTTCEE--------------GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred hcccCcCCCEEECCCCcc--------------ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc
Confidence 355667788888877762 22 3556788899999999999888765 6778899999999999996
Q ss_pred CCCCCC-CCCCcc-cceEeccccccccccCccccCCCCCCCCCCCCCCCCcceEEEeCCccc
Q 037465 347 NCEHLP-PLGKLP-LEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELSIEGCPLL 406 (432)
Q Consensus 347 ~~~~l~-~~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~cp~L 406 (432)
.....+ .++.++ |+.|++++|. ++..+...+.. .+++|+.|++++++--
T Consensus 211 l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~----------~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 211 FFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQELQH----------FPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CSBCCSGGGTTCTTCCEEECTTSC-CCBCSSSSCCC----------CCTTCCEEECTTCCEE
T ss_pred cCccChhhccCcccCCEeECCCCC-CcccCHHHHHh----------hhccCCEEEccCCCee
Confidence 544333 467899 9999999997 66554433321 2359999999998743
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.85 E-value=6.6e-21 Score=187.23 Aligned_cols=241 Identities=19% Similarity=0.173 Sum_probs=181.0
Q ss_pred eEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-Ccc
Q 037465 63 VRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-PEN 141 (432)
Q Consensus 63 i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-p~~ 141 (432)
.+.+...+.++..+|..+. +++++|++++|.+ ... .+..|..+++|++|++++ +.+..+ |..
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i-----~~~-~~~~~~~l~~L~~L~Ls~---------n~i~~~~~~~ 118 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNI-----QMI-QADTFRHLHHLEVLQLGR---------NSIRQIEVGA 118 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCC-----CEE-CTTTTTTCTTCCEEECCS---------SCCCEECTTT
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCCcC-----ceE-CHHHcCCCCCCCEEECCC---------CccCCcChhh
Confidence 4567777888888887664 6899999999954 332 455688999999999999 667776 467
Q ss_pred ccCCccccEEEeCCccccccchh-hhccCCccEEecccccccccCCh-hhhcccccceEEcCCCCccccCCc-cCCcccc
Q 037465 142 VGKLIHLKYLNLSGLCIKRLPET-LCELYNLQKLDIRWCRNLRELPA-GIGKLMNMRSLLNDNTRSLKYMPI-GISKLTS 218 (432)
Q Consensus 142 ~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~ 218 (432)
+.++++|++|++++|.+..+|.. +..+++|++|++++|. +..+|. .+..+++|+.|++++|.....++. .+..+++
T Consensus 119 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~ 197 (452)
T 3zyi_A 119 FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN 197 (452)
T ss_dssp TTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTT
T ss_pred ccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCC
Confidence 88899999999999999988764 7889999999999998 555554 577899999999999877777774 4788999
Q ss_pred cccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhh
Q 037465 219 LRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKK 298 (432)
Q Consensus 219 L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 298 (432)
|++|++.++.... .+.+..+++|+.|++++.. +....+..+..+++|+.|++++|.+
T Consensus 198 L~~L~L~~n~l~~-------~~~~~~l~~L~~L~Ls~N~----l~~~~~~~~~~l~~L~~L~L~~n~l------------ 254 (452)
T 3zyi_A 198 LKYLNLGMCNIKD-------MPNLTPLVGLEELEMSGNH----FPEIRPGSFHGLSSLKKLWVMNSQV------------ 254 (452)
T ss_dssp CCEEECTTSCCSS-------CCCCTTCTTCCEEECTTSC----CSEECGGGGTTCTTCCEEECTTSCC------------
T ss_pred CCEEECCCCcccc-------cccccccccccEEECcCCc----CcccCcccccCccCCCEEEeCCCcC------------
Confidence 9999998876552 3457777888888888732 2233345677778888888888772
Q ss_pred hhhHhhhhcCCCCCCCcEEEEeeeCCCCCChh-hhccCCCcEEEEeCCC
Q 037465 299 EKDEQLLKALQPPVNVEELWIVYYGGNIFPKW-LTSLTNLRNLYLSSCF 346 (432)
Q Consensus 299 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~ 346 (432)
.......+..+++|+.|++++|....+|.. +..+++|+.|++++|+
T Consensus 255 --~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 255 --SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp --CEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred --ceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 223344566677778888777776665543 4467777888777775
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.85 E-value=7.1e-21 Score=186.35 Aligned_cols=241 Identities=18% Similarity=0.192 Sum_probs=176.7
Q ss_pred eEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC-cc
Q 037465 63 VRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP-EN 141 (432)
Q Consensus 63 i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp-~~ 141 (432)
.+.+...+.++..+|..+. ++++.|++++|.+ ... .+..|..+++|++|++++ +.+..++ ..
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i-----~~~-~~~~~~~l~~L~~L~Ls~---------n~i~~i~~~~ 107 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQI-----QII-KVNSFKHLRHLEILQLSR---------NHIRTIEIGA 107 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCC-----CEE-CTTTTSSCSSCCEEECCS---------SCCCEECGGG
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcC-----Cee-CHHHhhCCCCCCEEECCC---------CcCCccChhh
Confidence 3467777788888887764 6889999999954 232 445588999999999999 6677764 67
Q ss_pred ccCCccccEEEeCCccccccch-hhhccCCccEEecccccccccCCh-hhhcccccceEEcCCCCccccCCc-cCCcccc
Q 037465 142 VGKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLRELPA-GIGKLMNMRSLLNDNTRSLKYMPI-GISKLTS 218 (432)
Q Consensus 142 ~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~ 218 (432)
+.++++|++|++++|.+..+|. .+..+++|++|++++|. +..+|. .+..+++|+.|++++|.....++. .+..+++
T Consensus 108 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~ 186 (440)
T 3zyj_A 108 FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN 186 (440)
T ss_dssp GTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSS
T ss_pred ccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccc
Confidence 8889999999999999988876 58889999999999998 545544 577899999999998777777664 5788899
Q ss_pred cccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhh
Q 037465 219 LRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKK 298 (432)
Q Consensus 219 L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 298 (432)
|++|++.++... .++.+..+++|+.|++++.. .....+..+..+++|+.|++++|.+
T Consensus 187 L~~L~L~~n~l~-------~~~~~~~l~~L~~L~Ls~N~----l~~~~~~~~~~l~~L~~L~L~~n~l------------ 243 (440)
T 3zyj_A 187 LRYLNLAMCNLR-------EIPNLTPLIKLDELDLSGNH----LSAIRPGSFQGLMHLQKLWMIQSQI------------ 243 (440)
T ss_dssp CCEEECTTSCCS-------SCCCCTTCSSCCEEECTTSC----CCEECTTTTTTCTTCCEEECTTCCC------------
T ss_pred cCeecCCCCcCc-------cccccCCCcccCEEECCCCc----cCccChhhhccCccCCEEECCCCce------------
Confidence 999998877655 23356777788888887742 2223345567777888888877762
Q ss_pred hhhHhhhhcCCCCCCCcEEEEeeeCCCCCChh-hhccCCCcEEEEeCCC
Q 037465 299 EKDEQLLKALQPPVNVEELWIVYYGGNIFPKW-LTSLTNLRNLYLSSCF 346 (432)
Q Consensus 299 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~ 346 (432)
.......+..+++|+.|++++|....+|.. +..+++|+.|++++|+
T Consensus 244 --~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 244 --QVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp --CEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred --eEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 222334566677777777777766665443 3467777777777765
No 52
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.85 E-value=2.3e-21 Score=178.57 Aligned_cols=222 Identities=17% Similarity=0.130 Sum_probs=150.4
Q ss_pred EEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-Cccc
Q 037465 64 RHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-PENV 142 (432)
Q Consensus 64 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-p~~~ 142 (432)
+.++..+.++..+|..+ .++|++|++++|.+ ... .+..+..+++|++|++++ +.++.+ |..+
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i-----~~~-~~~~~~~~~~L~~L~l~~---------n~l~~~~~~~~ 76 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRI-----SHV-PAASFRACRNLTILWLHS---------NVLARIDAAAF 76 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCC-----CEE-CTTTTTTCTTCCEEECCS---------SCCCEECTTTT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcC-----Ccc-CHHHcccCCCCCEEECCC---------CccceeCHhhc
Confidence 45677777777777654 46888999988854 232 445578888999999988 566666 6678
Q ss_pred cCCccccEEEeCCcc-cccc-chhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccc
Q 037465 143 GKLIHLKYLNLSGLC-IKRL-PETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLR 220 (432)
Q Consensus 143 ~~l~~L~~L~L~~~~-l~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 220 (432)
..+++|++|++++|. +..+ |..+..+++|++|++++|......|..+..+++|++|++++|......+..++.+++|+
T Consensus 77 ~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 156 (285)
T 1ozn_A 77 TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 156 (285)
T ss_dssp TTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCcc
Confidence 888899999999887 7777 55788888899999988884444466677888888888888855443334467777777
Q ss_pred cccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhh
Q 037465 221 TLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEK 300 (432)
Q Consensus 221 ~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 300 (432)
+|++.++.... .....+ ..+++|+.|++++|.+
T Consensus 157 ~L~l~~n~l~~-----~~~~~~----------------------------~~l~~L~~L~l~~n~l-------------- 189 (285)
T 1ozn_A 157 HLFLHGNRISS-----VPERAF----------------------------RGLHSLDRLLLHQNRV-------------- 189 (285)
T ss_dssp EEECCSSCCCE-----ECTTTT----------------------------TTCTTCCEEECCSSCC--------------
T ss_pred EEECCCCcccc-----cCHHHh----------------------------cCccccCEEECCCCcc--------------
Confidence 77776654431 111123 3344555555555541
Q ss_pred hHhhhhcCCCCCCCcEEEEeeeCCCCCC-hhhhccCCCcEEEEeCCCCCC
Q 037465 301 DEQLLKALQPPVNVEELWIVYYGGNIFP-KWLTSLTNLRNLYLSSCFNCE 349 (432)
Q Consensus 301 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~ 349 (432)
....+..+..+++|+.|++++|....++ .++..+++|+.|++++|....
T Consensus 190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 1222344555666666766666666555 346678888888888886544
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.84 E-value=9.7e-20 Score=184.20 Aligned_cols=258 Identities=23% Similarity=0.214 Sum_probs=199.0
Q ss_pred CceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCc
Q 037465 61 GKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE 140 (432)
Q Consensus 61 ~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~ 140 (432)
..++.+++.++.+..+|..+. ++|++|++++|.++. ++. .+++|++|++++ +.++.+|.
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~-------lp~---~l~~L~~L~Ls~---------N~l~~lp~ 98 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS-------LPA---LPPELRTLEVSG---------NQLTSLPV 98 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSC-------CCC---CCTTCCEEEECS---------CCCSCCCC
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCC-------CCC---cCCCCCEEEcCC---------CcCCcCCC
Confidence 358889999999999888775 799999999996532 333 578999999999 67888886
Q ss_pred cccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccc
Q 037465 141 NVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLR 220 (432)
Q Consensus 141 ~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 220 (432)
.+++|++|++++|.+..+|. .+++|++|++++|. +..+|.. +++|++|++++|. +..+|. .+++|+
T Consensus 99 ---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~-l~~l~~---~~~~L~ 164 (622)
T 3g06_A 99 ---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQ-LASLPA---LPSELC 164 (622)
T ss_dssp ---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC-CSCCCC---CCTTCC
T ss_pred ---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCc-CCCcCC---ccCCCC
Confidence 68999999999999999986 67899999999998 7778763 4899999999994 445664 346788
Q ss_pred cccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhh
Q 037465 221 TLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEK 300 (432)
Q Consensus 221 ~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 300 (432)
.|++.++.... .+ ..+++|+.|+++++.- ...+ ...++|+.|++++|.+.
T Consensus 165 ~L~L~~N~l~~------l~---~~~~~L~~L~Ls~N~l-~~l~-------~~~~~L~~L~L~~N~l~------------- 214 (622)
T 3g06_A 165 KLWAYNNQLTS------LP---MLPSGLQELSVSDNQL-ASLP-------TLPSELYKLWAYNNRLT------------- 214 (622)
T ss_dssp EEECCSSCCSC------CC---CCCTTCCEEECCSSCC-SCCC-------CCCTTCCEEECCSSCCS-------------
T ss_pred EEECCCCCCCC------Cc---ccCCCCcEEECCCCCC-CCCC-------CccchhhEEECcCCccc-------------
Confidence 88888776653 22 4467899999887432 2211 13478999999998832
Q ss_pred hHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCCCCCCcc-cceEeccccccccccCccccC
Q 037465 301 DEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTLYNLKSVKRVGNEFLG 379 (432)
Q Consensus 301 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~l~-L~~L~l~~c~~l~~~~~~~~~ 379 (432)
.++ ..+++|++|++++|....+| ..+++|+.|++++|. ++.+|. .++ |+.|++++|. ++.+|..+.
T Consensus 215 --~l~---~~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~-L~~lp~--~~~~L~~L~Ls~N~-L~~lp~~l~- 281 (622)
T 3g06_A 215 --SLP---ALPSGLKELIVSGNRLTSLP---VLPSELKELMVSGNR-LTSLPM--LPSGLLSLSVYRNQ-LTRLPESLI- 281 (622)
T ss_dssp --SCC---CCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSC-CCSCCGGGG-
T ss_pred --ccC---CCCCCCCEEEccCCccCcCC---CCCCcCcEEECCCCC-CCcCCc--ccccCcEEeCCCCC-CCcCCHHHh-
Confidence 111 23578999999999888877 467899999999994 556776 567 9999999996 888876543
Q ss_pred CCCCCCCCCCCCCCCcceEEEeCCcccc
Q 037465 380 IEESSEDDPSSSSSSSSELSIEGCPLLE 407 (432)
Q Consensus 380 ~~~~~~~~~~~~~~~L~~L~i~~cp~L~ 407 (432)
.+++|+.|++++|+--.
T Consensus 282 -----------~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 282 -----------HLSSETTVNLEGNPLSE 298 (622)
T ss_dssp -----------GSCTTCEEECCSCCCCH
T ss_pred -----------hccccCEEEecCCCCCC
Confidence 47899999999987443
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.84 E-value=2.8e-20 Score=182.76 Aligned_cols=221 Identities=18% Similarity=0.147 Sum_probs=133.4
Q ss_pred CcceEEEeCCCCCCCCCCCCccccc-CccccCCccccEEEeCCccccccc-hhhhccCCccEEecccccccccCChh-hh
Q 037465 114 ACLRALVISQSSSFSHPGPNLITEI-PENVGKLIHLKYLNLSGLCIKRLP-ETLCELYNLQKLDIRWCRNLRELPAG-IG 190 (432)
Q Consensus 114 ~~L~~L~L~~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~-i~ 190 (432)
+++++|++++ +.++.+ |..+.++++|++|++++|.+..++ ..+..+++|++|++++|. +..+|.. +.
T Consensus 75 ~~l~~L~L~~---------n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 144 (452)
T 3zyi_A 75 SNTRYLNLME---------NNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFE 144 (452)
T ss_dssp TTCSEEECCS---------SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSS
T ss_pred CCccEEECcC---------CcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhc
Confidence 5788888888 566666 567788888888888888877665 467788888888888887 5555543 66
Q ss_pred cccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhccc
Q 037465 191 KLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQL 270 (432)
Q Consensus 191 ~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l 270 (432)
.+++|++|++++|......+..+..+++|+.|++.++.... ......+..+++|+.|+++++.- ... ..+
T Consensus 145 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~----~i~~~~~~~l~~L~~L~L~~n~l-~~~-----~~~ 214 (452)
T 3zyi_A 145 YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE----YISEGAFEGLFNLKYLNLGMCNI-KDM-----PNL 214 (452)
T ss_dssp SCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCC----EECTTTTTTCTTCCEEECTTSCC-SSC-----CCC
T ss_pred ccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcc----ccChhhccCCCCCCEEECCCCcc-ccc-----ccc
Confidence 78888888888885543333467778888888877654432 22223455666677766665322 111 234
Q ss_pred ccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCC-ChhhhccCCCcEEEEeCCCCCC
Q 037465 271 YNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIF-PKWLTSLTNLRNLYLSSCFNCE 349 (432)
Q Consensus 271 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~ 349 (432)
..+++|+.|++++|.+ ....+..+..+++|+.|++.+|....+ +..+..+++|+.|++++|....
T Consensus 215 ~~l~~L~~L~Ls~N~l--------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 280 (452)
T 3zyi_A 215 TPLVGLEELEMSGNHF--------------PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS 280 (452)
T ss_dssp TTCTTCCEEECTTSCC--------------SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred cccccccEEECcCCcC--------------cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCc
Confidence 5556666666666652 222233445555555555555544432 3344455555555555553322
Q ss_pred CCC-CCCCcc-cceEeccccc
Q 037465 350 HLP-PLGKLP-LEKLTLYNLK 368 (432)
Q Consensus 350 ~l~-~~~~l~-L~~L~l~~c~ 368 (432)
..+ .++.++ |+.|++++|+
T Consensus 281 ~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 281 LPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CCTTSSTTCTTCCEEECCSSC
T ss_pred cChHHhccccCCCEEEccCCC
Confidence 221 234455 5555555554
No 55
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.84 E-value=1.4e-22 Score=189.65 Aligned_cols=262 Identities=11% Similarity=0.014 Sum_probs=165.5
Q ss_pred eEEEEeecCCCCCCC-ccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCcc
Q 037465 63 VRHLGLNFEGGAPLP-MSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPEN 141 (432)
Q Consensus 63 i~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~ 141 (432)
.+...+..+.+...+ ..+..+++|++|++++|.+ ... .+..+..+++|++|++++ +.+..+++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l-----~~~-~~~~~~~l~~L~~L~Ls~---------n~l~~~~~- 75 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL-----SQI-SAADLAPFTKLELLNLSS---------NVLYETLD- 75 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCC-----CCC-CHHHHTTCTTCCEEECTT---------SCCEEEEE-
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCcc-----CcC-CHHHhhCCCcCCEEECCC---------CcCCcchh-
Confidence 333444444433322 2345567899999999843 333 556688899999999988 56666554
Q ss_pred ccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccccccc
Q 037465 142 VGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRT 221 (432)
Q Consensus 142 ~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~ 221 (432)
+..+++|++|++++|.+..++. .++|++|++++|. +..++. ..+++|+.|++++|......+..++.+++|++
T Consensus 76 ~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~~n~-l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 148 (317)
T 3o53_A 76 LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQY 148 (317)
T ss_dssp ETTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSC-CSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEE
T ss_pred hhhcCCCCEEECcCCccccccC----CCCcCEEECCCCc-cCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCE
Confidence 8888999999999998877763 3788999999887 444443 34678899999988665555567778888888
Q ss_pred ccceEecccccCCCCcCcccc-ccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhh
Q 037465 222 LGKFVVGGGVDGSSTCRLESL-KNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEK 300 (432)
Q Consensus 222 L~l~~~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 300 (432)
|++.++.... ..+..+ ..+++|+.|+++++.- ... .....+++|+.|++++|.+
T Consensus 149 L~Ls~N~l~~-----~~~~~~~~~l~~L~~L~L~~N~l-~~~-----~~~~~l~~L~~L~Ls~N~l-------------- 203 (317)
T 3o53_A 149 LDLKLNEIDT-----VNFAELAASSDTLEHLNLQYNFI-YDV-----KGQVVFAKLKTLDLSSNKL-------------- 203 (317)
T ss_dssp EECTTSCCCE-----EEGGGGGGGTTTCCEEECTTSCC-CEE-----ECCCCCTTCCEEECCSSCC--------------
T ss_pred EECCCCCCCc-----ccHHHHhhccCcCCEEECCCCcC-ccc-----ccccccccCCEEECCCCcC--------------
Confidence 8888776552 223333 3567777777776432 111 1223466677777776662
Q ss_pred hHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCC-CCCC-CCCCcc-cceEecccccccccc
Q 037465 301 DEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNC-EHLP-PLGKLP-LEKLTLYNLKSVKRV 373 (432)
Q Consensus 301 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~l~-~~~~l~-L~~L~l~~c~~l~~~ 373 (432)
..++..+..+++|+.|++++|....+|..+..+++|+.|++++|... ..++ .++.++ |+.|++.++..++..
T Consensus 204 -~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 204 -AFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp -CEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred -CcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 12222344556666666666666666666666666666666666544 2222 244556 666666655555444
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.84 E-value=3.7e-20 Score=181.21 Aligned_cols=240 Identities=19% Similarity=0.179 Sum_probs=150.7
Q ss_pred ccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-CccccCCccccEEEeCCccccccc-h
Q 037465 86 LRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-PENVGKLIHLKYLNLSGLCIKRLP-E 163 (432)
Q Consensus 86 L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~L~~~~l~~lp-~ 163 (432)
.+.++..+..++ . +|..+ .+++++|++++ +.++.+ +..+.++++|++|++++|.+..++ .
T Consensus 45 ~~~v~c~~~~l~------~-iP~~~--~~~l~~L~L~~---------n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~ 106 (440)
T 3zyj_A 45 FSKVICVRKNLR------E-VPDGI--STNTRLLNLHE---------NQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIG 106 (440)
T ss_dssp SCEEECCSCCCS------S-CCSCC--CTTCSEEECCS---------CCCCEECTTTTSSCSSCCEEECCSSCCCEECGG
T ss_pred CCEEEeCCCCcC------c-CCCCC--CCCCcEEEccC---------CcCCeeCHHHhhCCCCCCEEECCCCcCCccChh
Confidence 456666666432 2 33222 26788888888 567666 467788888888888888888766 4
Q ss_pred hhhccCCccEEecccccccccCCh-hhhcccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCcCcccc
Q 037465 164 TLCELYNLQKLDIRWCRNLRELPA-GIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESL 242 (432)
Q Consensus 164 ~i~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l 242 (432)
.+..+++|++|++++|. +..+|. .+..+++|++|++++|......+..+..+++|++|++.++.... ......+
T Consensus 107 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~----~i~~~~~ 181 (440)
T 3zyj_A 107 AFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS----YISEGAF 181 (440)
T ss_dssp GGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCC----EECTTTT
T ss_pred hccCCccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcc----eeCcchh
Confidence 67888888888888887 555554 47788888888888886544444567788888888887654432 2233346
Q ss_pred ccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeee
Q 037465 243 KNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYY 322 (432)
Q Consensus 243 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 322 (432)
..+++|+.|+++++.- ... ..+..+++|+.|++++|.+ ....+..+..+++|++|++.+|
T Consensus 182 ~~l~~L~~L~L~~n~l-~~~-----~~~~~l~~L~~L~Ls~N~l--------------~~~~~~~~~~l~~L~~L~L~~n 241 (440)
T 3zyj_A 182 EGLSNLRYLNLAMCNL-REI-----PNLTPLIKLDELDLSGNHL--------------SAIRPGSFQGLMHLQKLWMIQS 241 (440)
T ss_dssp TTCSSCCEEECTTSCC-SSC-----CCCTTCSSCCEEECTTSCC--------------CEECTTTTTTCTTCCEEECTTC
T ss_pred hcccccCeecCCCCcC-ccc-----cccCCCcccCEEECCCCcc--------------CccChhhhccCccCCEEECCCC
Confidence 6677777777776422 211 2355666777777776662 2222345555666666666665
Q ss_pred CCCCC-ChhhhccCCCcEEEEeCCCCCCCCC-CCCCcc-cceEeccccc
Q 037465 323 GGNIF-PKWLTSLTNLRNLYLSSCFNCEHLP-PLGKLP-LEKLTLYNLK 368 (432)
Q Consensus 323 ~~~~~-~~~l~~l~~L~~L~l~~~~~~~~l~-~~~~l~-L~~L~l~~c~ 368 (432)
....+ +..+..+++|+.|++++|......+ .+..++ |+.|++++|+
T Consensus 242 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 242 QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred ceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 55443 3344456666666666664333222 245556 6666666554
No 57
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.82 E-value=2.5e-20 Score=182.67 Aligned_cols=143 Identities=14% Similarity=0.036 Sum_probs=71.4
Q ss_pred CCceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcc-------------eEEEeCCCCC
Q 037465 60 GGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACL-------------RALVISQSSS 126 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L-------------~~L~L~~~~~ 126 (432)
.+.++.+.++++.+..+|..+.++++|++|++++|. +.+. .|..++.+++| ++|++++
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~-----~~~~-~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~--- 80 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSE-----WERN-APPGNGEQREMAVSRLRDCLDRQAHELELNN--- 80 (454)
T ss_dssp ------------------------CCHHHHHHHHHH-----HHHT-SCTTSCCCHHHHHHHHHHHHHHTCSEEECTT---
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCc-----cccc-CCcccccchhcchhhhhhhhccCCCEEEecC---
Confidence 567888999999998899999999999999999984 4444 44446666654 7888887
Q ss_pred CCCCCCCcccccCccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCcc
Q 037465 127 FSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSL 206 (432)
Q Consensus 127 ~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~ 206 (432)
+.++.+|.. .++|++|++++|.+..+|.. +++|++|++++|. +..+|.. .++|++|++++|...
T Consensus 81 ------~~l~~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~-l~~l~~~---~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 81 ------LGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN-LKALSDL---PPLLEYLGVSNNQLE 144 (454)
T ss_dssp ------SCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC-CSCCCSC---CTTCCEEECCSSCCS
T ss_pred ------CccccCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCc-cCcccCC---CCCCCEEECcCCCCC
Confidence 456666542 35677777777776666643 2556666666655 3333321 145666666666333
Q ss_pred ccCCccCCcccccccccceEecc
Q 037465 207 KYMPIGISKLTSLRTLGKFVVGG 229 (432)
Q Consensus 207 ~~~p~~l~~l~~L~~L~l~~~~~ 229 (432)
.+| .++.+++|++|++.++..
T Consensus 145 -~lp-~~~~l~~L~~L~l~~N~l 165 (454)
T 1jl5_A 145 -KLP-ELQNSSFLKIIDVDNNSL 165 (454)
T ss_dssp -SCC-CCTTCTTCCEEECCSSCC
T ss_pred -CCc-ccCCCCCCCEEECCCCcC
Confidence 355 355666666666655543
No 58
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.82 E-value=1.4e-19 Score=185.21 Aligned_cols=146 Identities=23% Similarity=0.142 Sum_probs=119.0
Q ss_pred EEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCc-cccC
Q 037465 66 LGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE-NVGK 144 (432)
Q Consensus 66 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~-~~~~ 144 (432)
.+-.+.++..+|..+. +.+++|++++|.+ + .+.+..|..+++|++|+|++ +.++.+|+ .|.+
T Consensus 36 ~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i-----~-~l~~~~f~~l~~L~~L~Ls~---------N~i~~i~~~~f~~ 98 (635)
T 4g8a_A 36 YQCMELNFYKIPDNLP--FSTKNLDLSFNPL-----R-HLGSYSFFSFPELQVLDLSR---------CEIQTIEDGAYQS 98 (635)
T ss_dssp EECTTSCCSSCCSSSC--TTCCEEECTTSCC-----C-EECTTTTTTCTTCCEEECTT---------CCCCEECTTTTTT
T ss_pred EECCCCCcCccCCCCC--cCCCEEEeeCCCC-----C-CCCHHHHhCCCCCCEEECCC---------CcCCCcChhHhcC
Confidence 3445556777887653 4799999999965 3 23556699999999999999 67888854 6899
Q ss_pred CccccEEEeCCccccccch-hhhccCCccEEecccccccccCCh-hhhcccccceEEcCCCCccc-cCCccCCccccccc
Q 037465 145 LIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLRELPA-GIGKLMNMRSLLNDNTRSLK-YMPIGISKLTSLRT 221 (432)
Q Consensus 145 l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~ 221 (432)
+++|++|+|++|+++.+|+ .+..+++|++|++++|. +..+|. .++.+++|++|++++|.... ..|..++.+++|++
T Consensus 99 L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~ 177 (635)
T 4g8a_A 99 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 177 (635)
T ss_dssp CTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred CCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhh
Confidence 9999999999999999986 57999999999999998 666654 48899999999999996544 45677888999999
Q ss_pred ccceEecc
Q 037465 222 LGKFVVGG 229 (432)
Q Consensus 222 L~l~~~~~ 229 (432)
|++.++..
T Consensus 178 L~L~~N~l 185 (635)
T 4g8a_A 178 LDLSSNKI 185 (635)
T ss_dssp EECCSSCC
T ss_pred hcccCccc
Confidence 98877654
No 59
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.82 E-value=1e-21 Score=183.29 Aligned_cols=204 Identities=19% Similarity=0.166 Sum_probs=116.6
Q ss_pred CCccccEEEeCCcccc-ccchhh--hccCCccEEecccccccccCChhhhcc-----cccceEEcCCCCccccCCccCCc
Q 037465 144 KLIHLKYLNLSGLCIK-RLPETL--CELYNLQKLDIRWCRNLRELPAGIGKL-----MNMRSLLNDNTRSLKYMPIGISK 215 (432)
Q Consensus 144 ~l~~L~~L~L~~~~l~-~lp~~i--~~l~~L~~L~l~~~~~~~~lp~~i~~l-----~~L~~L~l~~~~~~~~~p~~l~~ 215 (432)
++++|++|++++|.+. .+|..+ ..+++|++|++++|. +..+|..++.+ ++|++|++++|......|..++.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 4566666666666654 455444 556666666666665 33335555554 56666666666544444455666
Q ss_pred ccccccccceEecccccCCCCcCcccc--ccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHH
Q 037465 216 LTSLRTLGKFVVGGGVDGSSTCRLESL--KNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEE 293 (432)
Q Consensus 216 l~~L~~L~l~~~~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 293 (432)
+++|++|+++++..... ...+..+ ..+++|+.|+++++. +..........+..+++|+.|++++|.+.+..
T Consensus 172 l~~L~~L~Ls~N~l~~~---~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--- 244 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGE---RGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDAA--- 244 (312)
T ss_dssp CSSCCEEECCSCTTCHH---HHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC---
T ss_pred CCCCCEEECCCCCcCcc---hHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCccc---
Confidence 66666666665543210 0011122 556666666666642 22222222233455677888888777732211
Q ss_pred HhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCCCCCCcc-cceEeccccc
Q 037465 294 RRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTLYNLK 368 (432)
Q Consensus 294 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~l~-L~~L~l~~c~ 368 (432)
....+..+++|++|++++|....+|.++. ++|+.|++++|.. +.+|.++.++ |+.|++++++
T Consensus 245 ----------~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l-~~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 245 ----------GAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRL-DRNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp ----------CCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCC-CSCCCTTTSCEEEEEECTTCT
T ss_pred ----------chhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCC-CCChhHhhCCCCCEEeccCCC
Confidence 01234456777777777777777776655 7788888887743 4446677777 8888887776
No 60
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.82 E-value=3.2e-22 Score=197.05 Aligned_cols=209 Identities=14% Similarity=0.044 Sum_probs=108.1
Q ss_pred CceEEEEeecCCCCCC--CccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465 61 GKVRHLGLNFEGGAPL--PMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI 138 (432)
Q Consensus 61 ~~i~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l 138 (432)
.+++.|+++++.+... ...+..+++|++|++++|.++.... . .++..+..+++|++|++++ +.++..
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~-~-~l~~~l~~~~~L~~L~Ls~---------n~l~~~ 71 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARC-K-DISSALRVNPALAELNLRS---------NELGDV 71 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHH-H-HHHHHHHTCTTCCEEECTT---------CCCHHH
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHH-H-HHHHHHHhCCCcCEEeCCC---------CcCChH
Confidence 4566677766666542 2225566777777777774322100 0 1344466667777777776 334331
Q ss_pred -Cccc-cCCc----cccEEEeCCcccc-----ccchhhhccCCccEEecccccccccCChhhhc-----ccccceEEcCC
Q 037465 139 -PENV-GKLI----HLKYLNLSGLCIK-----RLPETLCELYNLQKLDIRWCRNLRELPAGIGK-----LMNMRSLLNDN 202 (432)
Q Consensus 139 -p~~~-~~l~----~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~-----l~~L~~L~l~~ 202 (432)
+..+ ..++ +|++|++++|.+. .+|..+..+++|++|++++|......+..+.. .++|++|++++
T Consensus 72 ~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 151 (461)
T 1z7x_W 72 GVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEY 151 (461)
T ss_dssp HHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCC
Confidence 1111 2233 5777777777655 34556666777777777766632222222221 34577777776
Q ss_pred CCcccc----CCccCCcccccccccceEecccccCCCCcCccccc-----cCccCCceeeCCCCCCCCchhhhhcccccc
Q 037465 203 TRSLKY----MPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLK-----NLQLLRECGIEGLGNVSHLDEAERLQLYNQ 273 (432)
Q Consensus 203 ~~~~~~----~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~ 273 (432)
|..... ++..+..+++|++|++.++.... ..+..+. ..++|+.|+++++.-........+..+..+
T Consensus 152 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~-----~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 226 (461)
T 1z7x_W 152 CSLSAASCEPLASVLRAKPDFKELTVSNNDINE-----AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASK 226 (461)
T ss_dssp SCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH-----HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHhhCCCCCEEECcCCCcch-----HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhC
Confidence 644332 23334455666666666655431 1112221 134566666666533222222234445556
Q ss_pred cCCceEEEeecc
Q 037465 274 QNLLCLHLEFGR 285 (432)
Q Consensus 274 ~~L~~L~l~~~~ 285 (432)
++|++|++++|.
T Consensus 227 ~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 227 ASLRELALGSNK 238 (461)
T ss_dssp TTCCEEECCSSB
T ss_pred CCccEEeccCCc
Confidence 666666666665
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.82 E-value=4e-21 Score=179.76 Aligned_cols=250 Identities=14% Similarity=0.052 Sum_probs=189.7
Q ss_pred chhhhccCCcceEEEeCCCCCCCCCCCCcccccC-ccccCCccccEEEeCCccccccchhhhccCCccEEeccccccccc
Q 037465 106 LPELFSKLACLRALVISQSSSFSHPGPNLITEIP-ENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRE 184 (432)
Q Consensus 106 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp-~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~ 184 (432)
+...+..+++|++|++++ +.++.++ ..+..+++|++|++++|.+..+++ +..+++|++|++++|. +..
T Consensus 26 ~~~~~~~~~~L~~L~L~~---------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~ 94 (317)
T 3o53_A 26 LASLRQSAWNVKELDLSG---------NPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQE 94 (317)
T ss_dssp HHHHHTTGGGCSEEECTT---------SCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEE
T ss_pred HHHHhccCCCCCEEECcC---------CccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-ccc
Confidence 445577788999999999 6677774 678999999999999999987765 8999999999999998 655
Q ss_pred CChhhhcccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchh
Q 037465 185 LPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDE 264 (432)
Q Consensus 185 lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 264 (432)
++ ..++|++|++++|.... ++. ..+++|++|++.++... ......+..+++|+.|++++..-. .
T Consensus 95 l~----~~~~L~~L~l~~n~l~~-~~~--~~~~~L~~L~l~~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~----~ 158 (317)
T 3o53_A 95 LL----VGPSIETLHAANNNISR-VSC--SRGQGKKNIYLANNKIT-----MLRDLDEGCRSRVQYLDLKLNEID----T 158 (317)
T ss_dssp EE----ECTTCCEEECCSSCCSE-EEE--CCCSSCEEEECCSSCCC-----SGGGBCTGGGSSEEEEECTTSCCC----E
T ss_pred cc----CCCCcCEEECCCCccCC-cCc--cccCCCCEEECCCCCCC-----CccchhhhccCCCCEEECCCCCCC----c
Confidence 54 34899999999996544 332 24688999999988766 333456778899999999985322 2
Q ss_pred hhhccc-ccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEe
Q 037465 265 AERLQL-YNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLS 343 (432)
Q Consensus 265 ~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~ 343 (432)
..+..+ ..+++|++|++++|.+. .. .....+++|++|++++|....+|..+..+++|+.|+++
T Consensus 159 ~~~~~~~~~l~~L~~L~L~~N~l~---------------~~-~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~ 222 (317)
T 3o53_A 159 VNFAELAASSDTLEHLNLQYNFIY---------------DV-KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLR 222 (317)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCC---------------EE-ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECT
T ss_pred ccHHHHhhccCcCCEEECCCCcCc---------------cc-ccccccccCCEEECCCCcCCcchhhhcccCcccEEECc
Confidence 222333 46799999999999832 11 23345899999999999998888888899999999999
Q ss_pred CCCCCCCCCCCCCcc-cceEeccccccccccCccccCCCCCCCCCCCCCCCCcceEEEeCCcccccc
Q 037465 344 SCFNCEHLPPLGKLP-LEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELSIEGCPLLENR 409 (432)
Q Consensus 344 ~~~~~~~l~~~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~cp~L~~~ 409 (432)
+|......+.++.++ |+.|++++|+-.......... .+++|+.|++.+|+.++..
T Consensus 223 ~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~-----------~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 223 NNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS-----------KNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp TSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHH-----------TCHHHHHHHHHHHHHHHSS
T ss_pred CCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHh-----------ccccceEEECCCchhccCC
Confidence 996554333578889 999999999843122222222 3678888888877666654
No 62
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.81 E-value=2.1e-22 Score=198.38 Aligned_cols=235 Identities=19% Similarity=0.080 Sum_probs=127.1
Q ss_pred ccccEEEeCCccccc-----cchhhhccCCccEEecccccccccCChhhh-----cccccceEEcCCCCcccc----CCc
Q 037465 146 IHLKYLNLSGLCIKR-----LPETLCELYNLQKLDIRWCRNLRELPAGIG-----KLMNMRSLLNDNTRSLKY----MPI 211 (432)
Q Consensus 146 ~~L~~L~L~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~-----~l~~L~~L~l~~~~~~~~----~p~ 211 (432)
++|++|++++|.+.. ++..+..+++|++|++++|......+..+. ..++|+.|++++|..... ++.
T Consensus 142 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 221 (461)
T 1z7x_W 142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 221 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH
T ss_pred CcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHH
Confidence 345555555555442 333445556666666666552222222222 134666666666643331 344
Q ss_pred cCCcccccccccceEecccccCCCCcC-ccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCc
Q 037465 212 GISKLTSLRTLGKFVVGGGVDGSSTCR-LESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGE 290 (432)
Q Consensus 212 ~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 290 (432)
.+..+++|++|++.++....... ... ......+++|+.|+++++.-........+..+..+++|++|++++|.+.+.
T Consensus 222 ~l~~~~~L~~L~Ls~n~l~~~~~-~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~- 299 (461)
T 1z7x_W 222 IVASKASLRELALGSNKLGDVGM-AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE- 299 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHH-HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHH-
T ss_pred HHHhCCCccEEeccCCcCChHHH-HHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchH-
Confidence 45566677777776665432000 000 111124667777777775322111122445566678888888887773111
Q ss_pred hHHHhhhhhhhHhhhhcCC-CCCCCcEEEEeeeCCCC-----CChhhhccCCCcEEEEeCCCCCCC-CCC----CC-Ccc
Q 037465 291 DEERRRKKEKDEQLLKALQ-PPVNVEELWIVYYGGNI-----FPKWLTSLTNLRNLYLSSCFNCEH-LPP----LG-KLP 358 (432)
Q Consensus 291 ~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~-----~~~~l~~l~~L~~L~l~~~~~~~~-l~~----~~-~l~ 358 (432)
....+...+. ..++|++|++++|.... ++.++..+++|+.|++++|..... +.. +. ..+
T Consensus 300 ---------~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 370 (461)
T 1z7x_W 300 ---------GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGS 370 (461)
T ss_dssp ---------HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred ---------HHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCC
Confidence 1122333322 33688888888877654 355566778888888888854332 111 11 257
Q ss_pred -cceEecccccccc-----ccCccccCCCCCCCCCCCCCCCCcceEEEeCCc
Q 037465 359 -LEKLTLYNLKSVK-----RVGNEFLGIEESSEDDPSSSSSSSSELSIEGCP 404 (432)
Q Consensus 359 -L~~L~l~~c~~l~-----~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~cp 404 (432)
|++|++++|. ++ .++..+. .+++|++|++++|+
T Consensus 371 ~L~~L~L~~n~-i~~~~~~~l~~~l~------------~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 371 VLRVLWLADCD-VSDSSCSSLAATLL------------ANHSLRELDLSNNC 409 (461)
T ss_dssp CCCEEECTTSC-CCHHHHHHHHHHHH------------HCCCCCEEECCSSS
T ss_pred ceEEEECCCCC-CChhhHHHHHHHHH------------hCCCccEEECCCCC
Confidence 8888888886 55 3333221 36889999998884
No 63
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.81 E-value=3e-19 Score=174.97 Aligned_cols=291 Identities=17% Similarity=0.140 Sum_probs=158.2
Q ss_pred CceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCc
Q 037465 61 GKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE 140 (432)
Q Consensus 61 ~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~ 140 (432)
.+++.++++++.+..++.. .++|++|++++|.+ .+ +++ +..+++|++|++++ +.++.+|.
T Consensus 111 ~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l-----~~--lp~-~~~l~~L~~L~l~~---------N~l~~lp~ 170 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQL-----EK--LPE-LQNSSFLKIIDVDN---------NSLKKLPD 170 (454)
T ss_dssp TTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCC-----SS--CCC-CTTCTTCCEEECCS---------SCCSCCCC
T ss_pred CCCcEEECCCCccCcccCC---CCCCCEEECcCCCC-----CC--Ccc-cCCCCCCCEEECCC---------CcCcccCC
Confidence 4556666666655544322 26788999988854 32 343 78888899999888 55666665
Q ss_pred cccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccc
Q 037465 141 NVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLR 220 (432)
Q Consensus 141 ~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 220 (432)
.+ .+|++|++++|.+..+| .++.+++|++|++++|. +..+|.. .++|+.|++++|.. ..+|. ++.+++|+
T Consensus 171 ~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~---~~~L~~L~l~~n~l-~~lp~-~~~l~~L~ 240 (454)
T 1jl5_A 171 LP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS-LKKLPDL---PLSLESIVAGNNIL-EELPE-LQNLPFLT 240 (454)
T ss_dssp CC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCCC---CTTCCEEECCSSCC-SSCCC-CTTCTTCC
T ss_pred Cc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc-CCcCCCC---cCcccEEECcCCcC-Ccccc-cCCCCCCC
Confidence 43 47888888888888777 67888888888888887 5555542 24788888888744 36663 77788888
Q ss_pred cccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhh-hh
Q 037465 221 TLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRK-KE 299 (432)
Q Consensus 221 ~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~ 299 (432)
+|++.++.... .+. ..++|+.|+++++.- ...+. ..++|+.|++++|.+.+-+....... -.
T Consensus 241 ~L~l~~N~l~~------l~~---~~~~L~~L~l~~N~l-~~l~~-------~~~~L~~L~ls~N~l~~l~~~~~~L~~L~ 303 (454)
T 1jl5_A 241 TIYADNNLLKT------LPD---LPPSLEALNVRDNYL-TDLPE-------LPQSLTFLDVSENIFSGLSELPPNLYYLN 303 (454)
T ss_dssp EEECCSSCCSS------CCS---CCTTCCEEECCSSCC-SCCCC-------CCTTCCEEECCSSCCSEESCCCTTCCEEE
T ss_pred EEECCCCcCCc------ccc---cccccCEEECCCCcc-cccCc-------ccCcCCEEECcCCccCcccCcCCcCCEEE
Confidence 88887765542 111 124566666554321 11100 11344444444443221000000000 00
Q ss_pred hhHhhhhcCCCC-CCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCCCCCCcc-cceEeccccccccc---cC
Q 037465 300 KDEQLLKALQPP-VNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTLYNLKSVKR---VG 374 (432)
Q Consensus 300 ~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~l~-L~~L~l~~c~~l~~---~~ 374 (432)
........+... ++|++|++++|....+|.. +++|+.|++++|. ++.+|. .++ |++|++++|. ++. +|
T Consensus 304 l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~-l~~lp~--~l~~L~~L~L~~N~-l~~l~~ip 376 (454)
T 1jl5_A 304 ASSNEIRSLCDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNH-LAEVPE--LPQNLKQLHVEYNP-LREFPDIP 376 (454)
T ss_dssp CCSSCCSEECCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSC-CSSCCCCC
T ss_pred CcCCcCCcccCCcCcCCEEECCCCcccccccc---CCcCCEEECCCCc-cccccc--hhhhccEEECCCCC-CCcCCCCh
Confidence 000000112223 5899999998887777754 5899999999995 446776 467 9999999987 554 33
Q ss_pred ccccCCCCCCCCC--CCCCCCCcceEEEeCCccc
Q 037465 375 NEFLGIEESSEDD--PSSSSSSSSELSIEGCPLL 406 (432)
Q Consensus 375 ~~~~~~~~~~~~~--~~~~~~~L~~L~i~~cp~L 406 (432)
..+........+. | ..+++|+.|++++++--
T Consensus 377 ~~l~~L~~n~~~~~i~-~~~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 377 ESVEDLRMNSHLAEVP-ELPQNLKQLHVETNPLR 409 (454)
T ss_dssp TTCCEEECCC------------------------
T ss_pred HHHHhhhhcccccccc-cccCcCCEEECCCCcCC
Confidence 3322110000000 1 12478888888887643
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=6.8e-21 Score=188.47 Aligned_cols=234 Identities=12% Similarity=0.047 Sum_probs=146.1
Q ss_pred cCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccccccc
Q 037465 83 FDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLP 162 (432)
Q Consensus 83 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp 162 (432)
+++|++|++++|.+ .+. ++..|..+++|++|++++ +.+...++ +..+++|++|++++|.+..+|
T Consensus 33 ~~~L~~L~Ls~n~l-----~~~-~~~~~~~l~~L~~L~Ls~---------N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~ 96 (487)
T 3oja_A 33 AWNVKELDLSGNPL-----SQI-SAADLAPFTKLELLNLSS---------NVLYETLD-LESLSTLRTLDLNNNYVQELL 96 (487)
T ss_dssp GGGCCEEECCSSCC-----CCC-CGGGGTTCTTCCEEECTT---------SCCEEEEE-CTTCTTCCEEECCSSEEEEEE
T ss_pred CCCccEEEeeCCcC-----CCC-CHHHHhCCCCCCEEEeeC---------CCCCCCcc-cccCCCCCEEEecCCcCCCCC
Confidence 34788999988843 333 455688888999999988 55665544 888888999999988888776
Q ss_pred hhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCcCcccc
Q 037465 163 ETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESL 242 (432)
Q Consensus 163 ~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l 242 (432)
.. ++|++|++++|. +..++. ..+++|+.|++++|......|..++.+++|+.|+++++.... ..+..+
T Consensus 97 ~~----~~L~~L~L~~N~-l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----~~~~~l 164 (487)
T 3oja_A 97 VG----PSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT-----VNFAEL 164 (487)
T ss_dssp EC----TTCCEEECCSSC-CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE-----EEGGGG
T ss_pred CC----CCcCEEECcCCc-CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC-----cChHHH
Confidence 33 788889988887 444443 346788888888887666666777888888888888776552 233344
Q ss_pred c-cCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEee
Q 037465 243 K-NLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVY 321 (432)
Q Consensus 243 ~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 321 (432)
. .+++|+.|+++++.- ... .....+++|+.|++++|.+. .++..+..+++|+.|++++
T Consensus 165 ~~~l~~L~~L~Ls~N~l-~~~-----~~~~~l~~L~~L~Ls~N~l~---------------~~~~~~~~l~~L~~L~Ls~ 223 (487)
T 3oja_A 165 AASSDTLEHLNLQYNFI-YDV-----KGQVVFAKLKTLDLSSNKLA---------------FMGPEFQSAAGVTWISLRN 223 (487)
T ss_dssp GGGTTTCCEEECTTSCC-CEE-----ECCCCCTTCCEEECCSSCCC---------------EECGGGGGGTTCSEEECTT
T ss_pred hhhCCcccEEecCCCcc-ccc-----cccccCCCCCEEECCCCCCC---------------CCCHhHcCCCCccEEEecC
Confidence 3 566777777766332 111 12234566666666666521 1222244445555555555
Q ss_pred eCCCCCChhhhccCCCcEEEEeCCCCC-CCCC-CCCCcc-cceEecc
Q 037465 322 YGGNIFPKWLTSLTNLRNLYLSSCFNC-EHLP-PLGKLP-LEKLTLY 365 (432)
Q Consensus 322 ~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~l~-~~~~l~-L~~L~l~ 365 (432)
|....+|.++..+++|+.|++++|... ..+| .++.++ |+.+++.
T Consensus 224 N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 224 NKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp SCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 555555555555555555555555433 1222 234445 5555443
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.80 E-value=3.3e-19 Score=164.12 Aligned_cols=200 Identities=21% Similarity=0.165 Sum_probs=125.1
Q ss_pred CCcceEEEeCCCCCCCCCCCCcccccC-ccccCCccccEEEeCCcccccc-chhhhccCCccEEecccccccccC-Chhh
Q 037465 113 LACLRALVISQSSSFSHPGPNLITEIP-ENVGKLIHLKYLNLSGLCIKRL-PETLCELYNLQKLDIRWCRNLREL-PAGI 189 (432)
Q Consensus 113 l~~L~~L~L~~~~~~~~~~~~~~~~lp-~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~l-p~~i 189 (432)
.++|++|++++ +.++.++ ..+..+++|++|++++|.+..+ |..+..+++|++|++++|..+..+ |..+
T Consensus 31 ~~~l~~L~l~~---------n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~ 101 (285)
T 1ozn_A 31 PAASQRIFLHG---------NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 101 (285)
T ss_dssp CTTCSEEECTT---------SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTT
T ss_pred CCCceEEEeeC---------CcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHh
Confidence 45677777777 5566654 3466677777777777776655 456667777777777776534444 5556
Q ss_pred hcccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcc
Q 037465 190 GKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQ 269 (432)
Q Consensus 190 ~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 269 (432)
..+++|++|++++|......|..+..+++|++|++.++.... .....
T Consensus 102 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------------------------------~~~~~ 148 (285)
T 1ozn_A 102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA---------------------------------LPDDT 148 (285)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC---------------------------------CCTTT
T ss_pred cCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc---------------------------------cCHhH
Confidence 667777777777765544444555666666666655443321 01122
Q ss_pred cccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCC-ChhhhccCCCcEEEEeCCCCC
Q 037465 270 LYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIF-PKWLTSLTNLRNLYLSSCFNC 348 (432)
Q Consensus 270 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~ 348 (432)
+..+++|+.|++++|.+ .......+..+++|++|++++|....+ |.++..+++|+.|++++|...
T Consensus 149 ~~~l~~L~~L~l~~n~l--------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 214 (285)
T 1ozn_A 149 FRDLGNLTHLFLHGNRI--------------SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214 (285)
T ss_dssp TTTCTTCCEEECCSSCC--------------CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred hccCCCccEEECCCCcc--------------cccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCC
Confidence 44556677777776652 111223466677888888888776654 666777888888888888544
Q ss_pred CCCC-CCCCcc-cceEeccccc
Q 037465 349 EHLP-PLGKLP-LEKLTLYNLK 368 (432)
Q Consensus 349 ~~l~-~~~~l~-L~~L~l~~c~ 368 (432)
...+ .++.++ |+.|++++|+
T Consensus 215 ~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 215 ALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CCCHHHHTTCTTCCEEECCSSC
T ss_pred cCCHHHcccCcccCEEeccCCC
Confidence 4332 266778 8888888776
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.79 E-value=1.2e-20 Score=175.97 Aligned_cols=247 Identities=15% Similarity=0.092 Sum_probs=186.3
Q ss_pred hccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCcccc--ccchhhh-------ccCCccEEeccccc
Q 037465 110 FSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIK--RLPETLC-------ELYNLQKLDIRWCR 180 (432)
Q Consensus 110 ~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~--~lp~~i~-------~l~~L~~L~l~~~~ 180 (432)
++..++|+.|++++ +.+ .+|..+... |+.|++++|.+. .+|..+. .+++|++|++++|.
T Consensus 39 ~~~~~~L~~l~l~~---------n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~ 106 (312)
T 1wwl_A 39 YGGGRSLEYLLKRV---------DTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE 106 (312)
T ss_dssp EEEEEECTTHHHHC---------CTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEB
T ss_pred EccCCCceeEeecc---------ccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCc
Confidence 56677889999998 556 778766544 899999999875 4666665 79999999999999
Q ss_pred ccccCChhh--hcccccceEEcCCCCccccCCccCCcc-----cccccccceEecccccCCCCcCccccccCccCCceee
Q 037465 181 NLRELPAGI--GKLMNMRSLLNDNTRSLKYMPIGISKL-----TSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGI 253 (432)
Q Consensus 181 ~~~~lp~~i--~~l~~L~~L~l~~~~~~~~~p~~l~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 253 (432)
..+.+|..+ +.+++|++|++++|..... |..++.+ ++|++|++.++... ...+..++++++|+.|++
T Consensus 107 l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~L 180 (312)
T 1wwl_A 107 VTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSL-----NFSCEQVRVFPALSTLDL 180 (312)
T ss_dssp CBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCC-----CCCTTTCCCCSSCCEEEC
T ss_pred ccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCc-----cchHHHhccCCCCCEEEC
Confidence 666888876 8899999999999965554 7777776 89999999998876 334467889999999999
Q ss_pred CCCCCCCCchhhhhcc--cccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCCC--h
Q 037465 254 EGLGNVSHLDEAERLQ--LYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFP--K 329 (432)
Q Consensus 254 ~~~~~~~~~~~~~~~~--l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~ 329 (432)
++..-.... ..+.. +..+++|++|++++|.+.+. .......+..+++|++|++++|.....+ .
T Consensus 181 s~N~l~~~~--~~~~~~~~~~l~~L~~L~L~~N~l~~~-----------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 247 (312)
T 1wwl_A 181 SDNPELGER--GLISALCPLKFPTLQVLALRNAGMETP-----------SGVCSALAAARVQLQGLDLSHNSLRDAAGAP 247 (312)
T ss_dssp CSCTTCHHH--HHHHHSCTTSCTTCCEEECTTSCCCCH-----------HHHHHHHHHTTCCCSEEECTTSCCCSSCCCS
T ss_pred CCCCcCcch--HHHHHHHhccCCCCCEEECCCCcCcch-----------HHHHHHHHhcCCCCCEEECCCCcCCcccchh
Confidence 985422111 12223 37889999999999984210 0112233456789999999998877644 3
Q ss_pred hhhccCCCcEEEEeCCCCCCCCCC-CCCcc-cceEeccccccccccCccccCCCCCCCCCCCCCCCCcceEEEeCCc
Q 037465 330 WLTSLTNLRNLYLSSCFNCEHLPP-LGKLP-LEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELSIEGCP 404 (432)
Q Consensus 330 ~l~~l~~L~~L~l~~~~~~~~l~~-~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~cp 404 (432)
.+..+++|+.|++++|... .+|. +. + |+.|++++|. ++.+|. . ..+++|++|++++++
T Consensus 248 ~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~-l~~~p~--~-----------~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 248 SCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNR-LDRNPS--P-----------DELPQVGNLSLKGNP 307 (312)
T ss_dssp CCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSC-CCSCCC--T-----------TTSCEEEEEECTTCT
T ss_pred hhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCC-CCCChh--H-----------hhCCCCCEEeccCCC
Confidence 4446899999999999654 6664 33 8 9999999997 887754 2 248899999999876
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=2.9e-19 Score=176.73 Aligned_cols=216 Identities=16% Similarity=0.049 Sum_probs=170.5
Q ss_pred cCCcceEEEeCCCCCCCCCCCCccccc-CccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhh
Q 037465 112 KLACLRALVISQSSSFSHPGPNLITEI-PENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIG 190 (432)
Q Consensus 112 ~l~~L~~L~L~~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~ 190 (432)
.+++|++|++++ +.+..+ |..+..+++|++|++++|.+..+++ +..+++|++|++++|. +..+|.
T Consensus 32 ~~~~L~~L~Ls~---------n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~--- 97 (487)
T 3oja_A 32 SAWNVKELDLSG---------NPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV--- 97 (487)
T ss_dssp TGGGCCEEECCS---------SCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE---
T ss_pred cCCCccEEEeeC---------CcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC---
Confidence 345899999999 667776 5689999999999999999987765 8999999999999998 665553
Q ss_pred cccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhccc
Q 037465 191 KLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQL 270 (432)
Q Consensus 191 ~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l 270 (432)
.++|+.|++++|......+ ..+++|+.|++.++... ...+..++.+++|+.|++++..- ....+..+
T Consensus 98 -~~~L~~L~L~~N~l~~~~~---~~l~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~l----~~~~~~~l 164 (487)
T 3oja_A 98 -GPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKIT-----MLRDLDEGCRSRVQYLDLKLNEI----DTVNFAEL 164 (487)
T ss_dssp -CTTCCEEECCSSCCCCEEE---CCCSSCEEEECCSSCCC-----SGGGBCGGGGSSEEEEECTTSCC----CEEEGGGG
T ss_pred -CCCcCEEECcCCcCCCCCc---cccCCCCEEECCCCCCC-----CCCchhhcCCCCCCEEECCCCCC----CCcChHHH
Confidence 4899999999996554333 24688999999988766 33455678899999999998432 22233444
Q ss_pred c-cccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCC
Q 037465 271 Y-NQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCE 349 (432)
Q Consensus 271 ~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 349 (432)
. .+++|+.|++++|.+.+ . .....+++|+.|++++|....+|..+..+++|+.|++++|....
T Consensus 165 ~~~l~~L~~L~Ls~N~l~~---------------~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 228 (487)
T 3oja_A 165 AASSDTLEHLNLQYNFIYD---------------V-KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL 228 (487)
T ss_dssp GGGTTTCCEEECTTSCCCE---------------E-ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE
T ss_pred hhhCCcccEEecCCCcccc---------------c-cccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc
Confidence 3 78999999999998321 1 33446899999999999998888888899999999999996654
Q ss_pred CCCCCCCcc-cceEeccccccc
Q 037465 350 HLPPLGKLP-LEKLTLYNLKSV 370 (432)
Q Consensus 350 ~l~~~~~l~-L~~L~l~~c~~l 370 (432)
..+.++.++ |+.|++++|+-.
T Consensus 229 lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 229 IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp ECTTCCCCTTCCEEECTTCCBC
T ss_pred cchhhccCCCCCEEEcCCCCCc
Confidence 344578889 999999999843
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.79 E-value=3.9e-18 Score=172.48 Aligned_cols=254 Identities=20% Similarity=0.161 Sum_probs=191.2
Q ss_pred CcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccccccch
Q 037465 84 DRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLPE 163 (432)
Q Consensus 84 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~ 163 (432)
.++++|++++|.++ . +|..+. ++|++|++++ +.++.+|. .+++|++|++++|.++.+|.
T Consensus 40 ~~l~~L~ls~n~L~------~-lp~~l~--~~L~~L~L~~---------N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~ 98 (622)
T 3g06_A 40 NGNAVLNVGESGLT------T-LPDCLP--AHITTLVIPD---------NNLTSLPA---LPPELRTLEVSGNQLTSLPV 98 (622)
T ss_dssp HCCCEEECCSSCCS------C-CCSCCC--TTCSEEEECS---------CCCSCCCC---CCTTCCEEEECSCCCSCCCC
T ss_pred CCCcEEEecCCCcC------c-cChhhC--CCCcEEEecC---------CCCCCCCC---cCCCCCEEEcCCCcCCcCCC
Confidence 46899999999653 2 333233 7999999999 67888886 57999999999999999996
Q ss_pred hhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCcCccccc
Q 037465 164 TLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLK 243 (432)
Q Consensus 164 ~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~ 243 (432)
.+++|++|++++|. +..+|. .+++|+.|++++|. +..+|.. +++|++|++.+|.... .+.
T Consensus 99 ---~l~~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l~~------l~~--- 158 (622)
T 3g06_A 99 ---LPPGLLELSIFSNP-LTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLAS------LPA--- 158 (622)
T ss_dssp ---CCTTCCEEEECSCC-CCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCSC------CCC---
T ss_pred ---CCCCCCEEECcCCc-CCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCcCCC------cCC---
Confidence 78999999999998 777776 67899999999994 5567764 4899999999886653 111
Q ss_pred cCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeC
Q 037465 244 NLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYG 323 (432)
Q Consensus 244 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 323 (432)
.+.+|+.|+++++.- ...+ ..+++|+.|++++|.+.+ ++ ..+++|+.|++.+|.
T Consensus 159 ~~~~L~~L~L~~N~l-~~l~-------~~~~~L~~L~Ls~N~l~~---------------l~---~~~~~L~~L~L~~N~ 212 (622)
T 3g06_A 159 LPSELCKLWAYNNQL-TSLP-------MLPSGLQELSVSDNQLAS---------------LP---TLPSELYKLWAYNNR 212 (622)
T ss_dssp CCTTCCEEECCSSCC-SCCC-------CCCTTCCEEECCSSCCSC---------------CC---CCCTTCCEEECCSSC
T ss_pred ccCCCCEEECCCCCC-CCCc-------ccCCCCcEEECCCCCCCC---------------CC---CccchhhEEECcCCc
Confidence 245788888877432 2211 456899999999998321 11 235799999999999
Q ss_pred CCCCChhhhccCCCcEEEEeCCCCCCCCCCCCCcc-cceEeccccccccccCccccCCCCCCCCCCCCCCCCcceEEEeC
Q 037465 324 GNIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELSIEG 402 (432)
Q Consensus 324 ~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~ 402 (432)
...+|. .+++|+.|++++|. ++.+| ..++ |+.|++++|. ++.+|. .+++|+.|++++
T Consensus 213 l~~l~~---~~~~L~~L~Ls~N~-L~~lp--~~l~~L~~L~Ls~N~-L~~lp~---------------~~~~L~~L~Ls~ 270 (622)
T 3g06_A 213 LTSLPA---LPSGLKELIVSGNR-LTSLP--VLPSELKELMVSGNR-LTSLPM---------------LPSGLLSLSVYR 270 (622)
T ss_dssp CSSCCC---CCTTCCEEECCSSC-CSCCC--CCCTTCCEEECCSSC-CSCCCC---------------CCTTCCEEECCS
T ss_pred ccccCC---CCCCCCEEEccCCc-cCcCC--CCCCcCcEEECCCCC-CCcCCc---------------ccccCcEEeCCC
Confidence 888775 35899999999994 45566 4568 9999999996 887765 378999999999
Q ss_pred CccccccccCCCCCCcccccCCCCccCCCC
Q 037465 403 CPLLENRYREGKGEDWHKISHIPHIQMSPD 432 (432)
Q Consensus 403 cp~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (432)
| .++.+. ..+..++++..+.+++|
T Consensus 271 N-~L~~lp-----~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 271 N-QLTRLP-----ESLIHLSSETTVNLEGN 294 (622)
T ss_dssp S-CCCSCC-----GGGGGSCTTCEEECCSC
T ss_pred C-CCCcCC-----HHHhhccccCEEEecCC
Confidence 8 555442 22445555655656543
No 69
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.78 E-value=2.6e-21 Score=186.18 Aligned_cols=270 Identities=17% Similarity=0.114 Sum_probs=174.7
Q ss_pred eEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcc-cccCcc
Q 037465 63 VRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLI-TEIPEN 141 (432)
Q Consensus 63 i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~-~~lp~~ 141 (432)
++...+...++..++..+..+++|++|++++|.++.... ..+...+..+++|++|++++|.. +.+ +.+|..
T Consensus 11 L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~--~~l~~~l~~~~~L~~L~Ls~~~~------~~l~~~~~~~ 82 (386)
T 2ca6_A 11 LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAA--RWLSENIASKKDLEIAEFSDIFT------GRVKDEIPEA 82 (386)
T ss_dssp CEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHH--HHHHHTTTTCTTCCEEECCSCCT------TSCGGGSHHH
T ss_pred cccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHH--HHHHHHHHhCCCccEEeCccccc------CccccchhHH
Confidence 333333444445577788889999999999995432110 01333477899999999998521 111 123433
Q ss_pred -------ccCCccccEEEeCCccccc-----cchhhhccCCccEEeccccccccc----CChhhhcc---------cccc
Q 037465 142 -------VGKLIHLKYLNLSGLCIKR-----LPETLCELYNLQKLDIRWCRNLRE----LPAGIGKL---------MNMR 196 (432)
Q Consensus 142 -------~~~l~~L~~L~L~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~----lp~~i~~l---------~~L~ 196 (432)
+..+++|++|++++|.+.. +|..+..+++|++|++++|..... ++..+..+ ++|+
T Consensus 83 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~ 162 (386)
T 2ca6_A 83 LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR 162 (386)
T ss_dssp HHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCc
Confidence 4788999999999999775 777889999999999999984322 33334444 8999
Q ss_pred eEEcCCCCcc-ccCC---ccCCcccccccccceEecccccCCCCcCcc-ccccCccCCceeeCCCCCCCCchhhhhcccc
Q 037465 197 SLLNDNTRSL-KYMP---IGISKLTSLRTLGKFVVGGGVDGSSTCRLE-SLKNLQLLRECGIEGLGNVSHLDEAERLQLY 271 (432)
Q Consensus 197 ~L~l~~~~~~-~~~p---~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~ 271 (432)
+|++++|... ..++ ..+..+++|++|++.+|....... ....+ .+..+++|+.|+++++.-........+..+.
T Consensus 163 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~-~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~ 241 (386)
T 2ca6_A 163 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGI-EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 241 (386)
T ss_dssp EEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHH-HHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG
T ss_pred EEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHH-HHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc
Confidence 9999998654 2333 346677888888888776542000 00222 6677788888888774321111134455677
Q ss_pred cccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcC--CCCCCCcEEEEeeeCCCC-----CChhh-hccCCCcEEEEe
Q 037465 272 NQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKAL--QPPVNVEELWIVYYGGNI-----FPKWL-TSLTNLRNLYLS 343 (432)
Q Consensus 272 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~-----~~~~l-~~l~~L~~L~l~ 343 (432)
.+++|+.|++++|.+.+. ....++..+ ..+++|++|++++|.... +|.++ .++++|+.|+++
T Consensus 242 ~~~~L~~L~L~~n~i~~~----------~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~ 311 (386)
T 2ca6_A 242 SWPNLRELGLNDCLLSAR----------GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELN 311 (386)
T ss_dssp GCTTCCEEECTTCCCCHH----------HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECT
T ss_pred cCCCcCEEECCCCCCchh----------hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEcc
Confidence 778888888888873211 122344555 337788888888777765 66666 357888888888
Q ss_pred CCCCCCCC
Q 037465 344 SCFNCEHL 351 (432)
Q Consensus 344 ~~~~~~~l 351 (432)
+|......
T Consensus 312 ~N~l~~~~ 319 (386)
T 2ca6_A 312 GNRFSEED 319 (386)
T ss_dssp TSBSCTTS
T ss_pred CCcCCcch
Confidence 88655444
No 70
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.78 E-value=7.8e-20 Score=172.33 Aligned_cols=124 Identities=16% Similarity=0.158 Sum_probs=77.3
Q ss_pred ccEEEEecCCcCccCccCCcchhhhccC--CcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccccc--c
Q 037465 86 LRSLLIYDESLSNLSLNGSILPELFSKL--ACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKR--L 161 (432)
Q Consensus 86 L~~L~l~~~~~~~~~~~~~~~~~~~~~l--~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~--l 161 (432)
++.++++++.+ . +..+..+ ++++.|++++ +.+...+..+..+++|++|++++|.+.. +
T Consensus 49 ~~~l~l~~~~~-----~----~~~~~~~~~~~l~~L~l~~---------n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~ 110 (336)
T 2ast_B 49 WQTLDLTGKNL-----H----PDVTGRLLSQGVIAFRCPR---------SFMDQPLAEHFSPFRVQHMDLSNSVIEVSTL 110 (336)
T ss_dssp SSEEECTTCBC-----C----HHHHHHHHHTTCSEEECTT---------CEECSCCCSCCCCBCCCEEECTTCEECHHHH
T ss_pred heeeccccccC-----C----HHHHHhhhhccceEEEcCC---------ccccccchhhccCCCCCEEEccCCCcCHHHH
Confidence 56677766632 1 2335555 6777777777 5555555556667777777777777652 6
Q ss_pred chhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccc--cCCccCCcccccccccceEe
Q 037465 162 PETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLK--YMPIGISKLTSLRTLGKFVV 227 (432)
Q Consensus 162 p~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~p~~l~~l~~L~~L~l~~~ 227 (432)
|..+..+++|++|++++|......|..++.+++|++|++++|.... .++..+..+++|++|++.++
T Consensus 111 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 111 HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp HHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred HHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence 6667777777777777776444566667777777777777773222 23333445555555555544
No 71
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.76 E-value=4e-20 Score=187.89 Aligned_cols=61 Identities=18% Similarity=0.086 Sum_probs=30.3
Q ss_pred ccCCCcEEEEeCCCCCC-CCCC-CCCcc-cceEeccccccccccCccccCCCCCCCCCCCCCCCCcceEEEeCCc
Q 037465 333 SLTNLRNLYLSSCFNCE-HLPP-LGKLP-LEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELSIEGCP 404 (432)
Q Consensus 333 ~l~~L~~L~l~~~~~~~-~l~~-~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~cp 404 (432)
.+++|+.|++++|.... .++. +..++ |++|+|++|+ ++........ ..+++|+.|++++|+
T Consensus 461 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~----------~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 461 YSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAV----------TKLPSLRYLWVQGYR 524 (592)
T ss_dssp SCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHH----------HHCSSCCEEEEESCB
T ss_pred hCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHH----------HhcCccCeeECcCCc
Confidence 35555555555554222 1221 24456 6666666666 4332111100 135677777777776
No 72
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=1.8e-17 Score=154.05 Aligned_cols=102 Identities=21% Similarity=0.368 Sum_probs=56.5
Q ss_pred cccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccccc
Q 037465 81 FEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKR 160 (432)
Q Consensus 81 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~ 160 (432)
.++++|++|++++|.++. ++. +..+++|++|++++ +.+..++. +..+++|++|++++|.+..
T Consensus 38 ~~l~~L~~L~l~~~~i~~-------l~~-~~~l~~L~~L~L~~---------n~i~~~~~-~~~l~~L~~L~L~~n~l~~ 99 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-------IEG-VQYLNNLIGLELKD---------NQITDLAP-LKNLTKITELELSGNPLKN 99 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-------CTT-GGGCTTCCEEECCS---------SCCCCCGG-GTTCCSCCEEECCSCCCSC
T ss_pred HHcCCcCEEEeeCCCccC-------chh-hhccCCCCEEEccC---------CcCCCChh-HccCCCCCEEEccCCcCCC
Confidence 445566666666664321 222 55566666666666 44555544 5556666666666666555
Q ss_pred cchhhhccCCccEEecccccccccCChhhhcccccceEEcCCC
Q 037465 161 LPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNT 203 (432)
Q Consensus 161 lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~ 203 (432)
++ .+..+++|++|++++|. +..++. +..+++|++|++++|
T Consensus 100 ~~-~~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n 139 (308)
T 1h6u_A 100 VS-AIAGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLN 139 (308)
T ss_dssp CG-GGTTCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSS
T ss_pred ch-hhcCCCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCC
Confidence 54 45556666666666655 444432 555555556555555
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.74 E-value=1.5e-17 Score=152.21 Aligned_cols=146 Identities=23% Similarity=0.122 Sum_probs=103.6
Q ss_pred EeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC-ccccCC
Q 037465 67 GLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP-ENVGKL 145 (432)
Q Consensus 67 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp-~~~~~l 145 (432)
...+..+..+|..+. ++|++|++++|.+ +.. .+..+..+++|++|++++ +.++.++ ..+..+
T Consensus 13 ~c~~~~l~~ip~~l~--~~l~~L~ls~n~l-----~~~-~~~~~~~l~~L~~L~l~~---------n~l~~~~~~~~~~l 75 (276)
T 2z62_A 13 QCMELNFYKIPDNLP--FSTKNLDLSFNPL-----RHL-GSYSFFSFPELQVLDLSR---------CEIQTIEDGAYQSL 75 (276)
T ss_dssp ECTTSCCSSCCSSSC--TTCCEEECTTCCC-----CEE-CTTTTTTCTTCSEEECTT---------CCCCEECTTTTTTC
T ss_pred EecCCCccccCCCCC--CCccEEECCCCcc-----ccc-CHhHhccccCCcEEECCC---------CcCCccCHHHccCC
Confidence 344455555666553 5688888888854 222 344578888888888888 5666664 367888
Q ss_pred ccccEEEeCCccccccc-hhhhccCCccEEecccccccccCCh-hhhcccccceEEcCCCCccc-cCCccCCcccccccc
Q 037465 146 IHLKYLNLSGLCIKRLP-ETLCELYNLQKLDIRWCRNLRELPA-GIGKLMNMRSLLNDNTRSLK-YMPIGISKLTSLRTL 222 (432)
Q Consensus 146 ~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L 222 (432)
++|++|++++|.+..++ ..+..+++|++|++++|. +..++. .++.+++|++|++++|.... .+|..++.+++|++|
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L 154 (276)
T 2z62_A 76 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred cCCCEEECCCCccCccChhhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEE
Confidence 88888888888887666 467888888888888887 444433 57778888888888885544 356677777777777
Q ss_pred cceEeccc
Q 037465 223 GKFVVGGG 230 (432)
Q Consensus 223 ~l~~~~~~ 230 (432)
++.++...
T Consensus 155 ~Ls~N~l~ 162 (276)
T 2z62_A 155 DLSSNKIQ 162 (276)
T ss_dssp ECCSSCCC
T ss_pred ECCCCCCC
Confidence 77766544
No 74
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.73 E-value=4.7e-17 Score=151.28 Aligned_cols=189 Identities=21% Similarity=0.230 Sum_probs=150.3
Q ss_pred CCceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC
Q 037465 60 GGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP 139 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp 139 (432)
.++++.|++.++.+..++ .+..+++|++|++++|.++ + ++. +..+++|++|++++ +.++.++
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~-----~--~~~-~~~l~~L~~L~L~~---------n~l~~~~ 101 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQIT-----D--LAP-LKNLTKITELELSG---------NPLKNVS 101 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCC-----C--CGG-GTTCCSCCEEECCS---------CCCSCCG
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCC-----C--Chh-HccCCCCCEEEccC---------CcCCCch
Confidence 568999999999998876 6889999999999999643 3 344 89999999999999 6677775
Q ss_pred ccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccccc
Q 037465 140 ENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSL 219 (432)
Q Consensus 140 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L 219 (432)
.+..+++|++|++++|.+..++. +..+++|++|++++|. +..++. ++.+++|+.|++++|.. ..++. +..+++|
T Consensus 102 -~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L 175 (308)
T 1h6u_A 102 -AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQV-SDLTP-LANLSKL 175 (308)
T ss_dssp -GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCC-CCCGG-GTTCTTC
T ss_pred -hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcC-CCChh-hcCCCCC
Confidence 68899999999999999999874 8999999999999998 666664 88999999999999954 44554 7889999
Q ss_pred ccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeecc
Q 037465 220 RTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGR 285 (432)
Q Consensus 220 ~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 285 (432)
+.|++.++.... ...+..+++|+.|+++++.- .... .+..+++|+.|++++|.
T Consensus 176 ~~L~l~~n~l~~-------~~~l~~l~~L~~L~L~~N~l-~~~~-----~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 176 TTLKADDNKISD-------ISPLASLPNLIEVHLKNNQI-SDVS-----PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp CEEECCSSCCCC-------CGGGGGCTTCCEEECTTSCC-CBCG-----GGTTCTTCCEEEEEEEE
T ss_pred CEEECCCCccCc-------ChhhcCCCCCCEEEccCCcc-Cccc-----cccCCCCCCEEEccCCe
Confidence 999998876652 22367777788888777432 2111 25666777777777776
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.73 E-value=2.9e-17 Score=149.81 Aligned_cols=198 Identities=17% Similarity=0.148 Sum_probs=142.0
Q ss_pred ceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCcc
Q 037465 62 KVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPEN 141 (432)
Q Consensus 62 ~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~ 141 (432)
..+.+++.++.+..+|..+. ++++.|++++|.+ ... .+..|..+++|++|++++ +.++.+|..
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l-----~~~-~~~~~~~l~~L~~L~l~~---------n~l~~i~~~ 79 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKL-----SSL-PSKAFHRLTKLRLLYLND---------NKLQTLPAG 79 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCC-----SCC-CTTSSSSCTTCCEEECCS---------SCCSCCCTT
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCC-----Cee-CHHHhcCCCCCCEEECCC---------CccCeeChh
Confidence 35578888888888887664 6799999999954 222 444588899999999998 667777655
Q ss_pred -ccCCccccEEEeCCccccccch-hhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccccc
Q 037465 142 -VGKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSL 219 (432)
Q Consensus 142 -~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L 219 (432)
+..+++|++|++++|.+..+|. .+..+++|++|++++|......+..+..+++|++|++++|......+..++.+++|
T Consensus 80 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 159 (270)
T 2o6q_A 80 IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159 (270)
T ss_dssp TTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc
Confidence 4779999999999999888875 45788999999999988444444456789999999999985443333447888899
Q ss_pred ccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeecc
Q 037465 220 RTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGR 285 (432)
Q Consensus 220 ~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 285 (432)
++|++.++.... .....+..+++|+.|++++..- .. .....+..+++|+.|++++|.
T Consensus 160 ~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~N~l-~~---~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 160 KELRLYNNQLKR-----VPEGAFDKLTELKTLKLDNNQL-KR---VPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CEEECCSSCCSC-----CCTTTTTTCTTCCEEECCSSCC-SC---CCTTTTTTCTTCCEEECCSSC
T ss_pred ceeEecCCcCcE-----eChhHhccCCCcCEEECCCCcC-Cc---CCHHHhccccCCCEEEecCCC
Confidence 999888776542 2233466677777777776422 21 112335556677777777666
No 76
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.73 E-value=1.4e-18 Score=176.61 Aligned_cols=129 Identities=13% Similarity=-0.003 Sum_probs=55.8
Q ss_pred CCccccEEEeCCcccc-----ccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCcc---ccCCccCCc
Q 037465 144 KLIHLKYLNLSGLCIK-----RLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSL---KYMPIGISK 215 (432)
Q Consensus 144 ~l~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~---~~~p~~l~~ 215 (432)
.+++|++|+++++.+. .++..+..+++|++|++++|. ...+|..+..+++|++|+++..... ...+..+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 3444555555544432 233333445555555555544 3334444455555555555432111 111222334
Q ss_pred ccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEe
Q 037465 216 LTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLE 282 (432)
Q Consensus 216 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 282 (432)
+++|+.|++..... ...+..+..+++|+.|+++++. +.. ......+..+++|++|+++
T Consensus 269 ~~~L~~L~l~~~~~------~~l~~~~~~~~~L~~L~Ls~~~-l~~--~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 269 PRKLCRLGLSYMGP------NEMPILFPFAAQIRKLDLLYAL-LET--EDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp CTTCCEEEETTCCT------TTGGGGGGGGGGCCEEEETTCC-CCH--HHHHHHHTTCTTCCEEEEE
T ss_pred cccccccCccccch------hHHHHHHhhcCCCcEEecCCCc-CCH--HHHHHHHHhCcCCCEEecc
Confidence 44444443332211 1123334456666666666654 211 1122234455555555555
No 77
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.73 E-value=1.5e-19 Score=173.86 Aligned_cols=245 Identities=18% Similarity=0.075 Sum_probs=173.3
Q ss_pred chhhhccCCcceEEEeCCCCCCCCCCCCcccc-----cCccccCCccccEEEeCCcccc----ccchhh-------hccC
Q 037465 106 LPELFSKLACLRALVISQSSSFSHPGPNLITE-----IPENVGKLIHLKYLNLSGLCIK----RLPETL-------CELY 169 (432)
Q Consensus 106 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~-----lp~~~~~l~~L~~L~L~~~~l~----~lp~~i-------~~l~ 169 (432)
+...+..+++|++|++++ +.++. ++..+..+++|++|++++|.+. .+|..+ ..++
T Consensus 24 l~~~l~~~~~L~~L~L~~---------n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~ 94 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSG---------NTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP 94 (386)
T ss_dssp TSHHHHHCSCCCEEECTT---------SEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCT
T ss_pred HHHHHhcCCCccEEECCC---------CCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCC
Confidence 445578899999999999 45544 4445778999999999998644 344443 6889
Q ss_pred CccEEecccccccc----cCChhhhcccccceEEcCCCCcccc----CCccCCcc---------cccccccceEeccccc
Q 037465 170 NLQKLDIRWCRNLR----ELPAGIGKLMNMRSLLNDNTRSLKY----MPIGISKL---------TSLRTLGKFVVGGGVD 232 (432)
Q Consensus 170 ~L~~L~l~~~~~~~----~lp~~i~~l~~L~~L~l~~~~~~~~----~p~~l~~l---------~~L~~L~l~~~~~~~~ 232 (432)
+|++|++++|.... .+|..+..+++|++|++++|..... ++..+..+ ++|++|++.+|....
T Consensus 95 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~- 173 (386)
T 2ca6_A 95 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN- 173 (386)
T ss_dssp TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG-
T ss_pred cccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc-
Confidence 99999999998544 3777889999999999999966432 22233344 899999998887652
Q ss_pred CCCCcCc---cccccCccCCceeeCCCCCCCCchh-hhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcC
Q 037465 233 GSSTCRL---ESLKNLQLLRECGIEGLGNVSHLDE-AERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKAL 308 (432)
Q Consensus 233 ~~~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 308 (432)
.... ..+..+++|+.|+++++.-...... ..+..+..+++|+.|++++|.+.+ .....++..+
T Consensus 174 ---~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~----------~g~~~l~~~l 240 (386)
T 2ca6_A 174 ---GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH----------LGSSALAIAL 240 (386)
T ss_dssp ---GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHH----------HHHHHHHHHG
T ss_pred ---HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCc----------HHHHHHHHHH
Confidence 1122 3566788999999988632111111 222377888999999999988311 1235566777
Q ss_pred CCCCCCcEEEEeeeCCCC-----CChhhhc--cCCCcEEEEeCCCCCC----CCCC-C-CCcc-cceEeccccccccccC
Q 037465 309 QPPVNVEELWIVYYGGNI-----FPKWLTS--LTNLRNLYLSSCFNCE----HLPP-L-GKLP-LEKLTLYNLKSVKRVG 374 (432)
Q Consensus 309 ~~~~~L~~L~l~~~~~~~-----~~~~l~~--l~~L~~L~l~~~~~~~----~l~~-~-~~l~-L~~L~l~~c~~l~~~~ 374 (432)
..+++|++|++++|.... ++.++.. +++|+.|++++|.... .+|. + .++| |++|++++|+ ++..+
T Consensus 241 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~-l~~~~ 319 (386)
T 2ca6_A 241 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR-FSEED 319 (386)
T ss_dssp GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB-SCTTS
T ss_pred ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc-CCcch
Confidence 888899999998887654 2455543 8899999999986554 2442 3 4578 9999999887 55444
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.73 E-value=2.2e-17 Score=152.05 Aligned_cols=202 Identities=18% Similarity=0.051 Sum_probs=133.4
Q ss_pred cccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-CccccCCccccEEEeCCcc
Q 037465 79 SFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-PENVGKLIHLKYLNLSGLC 157 (432)
Q Consensus 79 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~L~~~~ 157 (432)
.+.+++++++++++++.++ . +|..+ .+++++|++++ +.++.+ |..+..+++|++|++++|.
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-----~--ip~~~--~~~l~~L~L~~---------N~l~~~~~~~~~~l~~L~~L~L~~n~ 66 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-----A--LPPDL--PKDTTILHLSE---------NLLYTFSLATLMPYTRLTQLNLDRAE 66 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-----S--CCSCC--CTTCCEEECTT---------SCCSEEEGGGGTTCTTCCEEECTTSC
T ss_pred cccccCCccEEECCCCCCC-----c--CCCCC--CCCCCEEEcCC---------CcCCccCHHHhhcCCCCCEEECCCCc
Confidence 3567788888888888542 2 23222 26788888888 566666 5678888888899998888
Q ss_pred ccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCc
Q 037465 158 IKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTC 237 (432)
Q Consensus 158 l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~ 237 (432)
+..++.. +.+++|++|++++|. +..+|..+..+++|+.|++++|......+..+..+++|++|++.++.... .
T Consensus 67 l~~~~~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-----~ 139 (290)
T 1p9a_G 67 LTKLQVD-GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-----L 139 (290)
T ss_dssp CCEEECC-SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC-----C
T ss_pred cCcccCC-CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc-----c
Confidence 8887754 788888888888887 67788778888888888888885544334557777778887777665432 1
Q ss_pred CccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEE
Q 037465 238 RLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEEL 317 (432)
Q Consensus 238 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 317 (432)
....+..++ +|+.|++++|.+. .-....+..+++|+.|
T Consensus 140 ~~~~~~~l~----------------------------~L~~L~L~~N~l~--------------~l~~~~~~~l~~L~~L 177 (290)
T 1p9a_G 140 PPGLLTPTP----------------------------KLEKLSLANNNLT--------------ELPAGLLNGLENLDTL 177 (290)
T ss_dssp CTTTTTTCT----------------------------TCCEEECTTSCCS--------------CCCTTTTTTCTTCCEE
T ss_pred Chhhccccc----------------------------CCCEEECCCCcCC--------------ccCHHHhcCcCCCCEE
Confidence 122233444 4444444444411 1111233445666666
Q ss_pred EEeeeCCCCCChhhhccCCCcEEEEeCCCC
Q 037465 318 WIVYYGGNIFPKWLTSLTNLRNLYLSSCFN 347 (432)
Q Consensus 318 ~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 347 (432)
++++|....+|..+...++|+.|++.+|+.
T Consensus 178 ~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 178 LLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp ECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred ECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence 666666666676666667777777777753
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.73 E-value=1e-17 Score=153.05 Aligned_cols=150 Identities=23% Similarity=0.275 Sum_probs=74.0
Q ss_pred CCceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC
Q 037465 60 GGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP 139 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp 139 (432)
.++++.+.+.++.+..++ .+..+++|++|++++|.+. + ++ .+..+++|++|++++ +.++.++
T Consensus 40 l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~-----~--~~-~l~~l~~L~~L~L~~---------n~l~~~~ 101 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLH-----D--IS-ALKELTNLTYLILTG---------NQLQSLP 101 (272)
T ss_dssp HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCC-----C--CG-GGTTCTTCCEEECTT---------SCCCCCC
T ss_pred ccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCC-----C--ch-hhcCCCCCCEEECCC---------CccCccC
Confidence 344555555555555432 3455555555555555331 1 22 255555555555555 3444443
Q ss_pred c-cccCCccccEEEeCCccccccchh-hhccCCccEEecccccccccCChh-hhcccccceEEcCCCCccccCCccCCcc
Q 037465 140 E-NVGKLIHLKYLNLSGLCIKRLPET-LCELYNLQKLDIRWCRNLRELPAG-IGKLMNMRSLLNDNTRSLKYMPIGISKL 216 (432)
Q Consensus 140 ~-~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~l~~l 216 (432)
. .+..+++|++|++++|.+..+|+. +..+++|++|++++|. +..+|.. ++.+++|+.|++++|......+..++.+
T Consensus 102 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 180 (272)
T 3rfs_A 102 NGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKL 180 (272)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred hhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCC
Confidence 2 245555555555555555554432 4555555555555554 3333322 3455555555555553332222334455
Q ss_pred cccccccceEec
Q 037465 217 TSLRTLGKFVVG 228 (432)
Q Consensus 217 ~~L~~L~l~~~~ 228 (432)
++|++|++.++.
T Consensus 181 ~~L~~L~L~~N~ 192 (272)
T 3rfs_A 181 TQLKDLRLYQNQ 192 (272)
T ss_dssp TTCCEEECCSSC
T ss_pred ccCCEEECCCCc
Confidence 555555555443
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.73 E-value=1.5e-17 Score=152.16 Aligned_cols=129 Identities=17% Similarity=0.090 Sum_probs=90.5
Q ss_pred CcceEEEeCCCCCCCCCCCCcccccCc-cccCCccccEEEeCCccccccch-hhhccCCccEEecccccccccCChhhhc
Q 037465 114 ACLRALVISQSSSFSHPGPNLITEIPE-NVGKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLRELPAGIGK 191 (432)
Q Consensus 114 ~~L~~L~L~~~~~~~~~~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~i~~ 191 (432)
++|++|++++ +.++.++. .+.++++|++|++++|.+..++. .+..+++|++|++++|......+..+..
T Consensus 28 ~~l~~L~ls~---------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (276)
T 2z62_A 28 FSTKNLDLSF---------NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (276)
T ss_dssp TTCCEEECTT---------CCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred CCccEEECCC---------CcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcC
Confidence 4688888888 66777654 67888888888888888887764 6778888888888888744444466778
Q ss_pred ccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCcCccccccCccCCceeeCC
Q 037465 192 LMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEG 255 (432)
Q Consensus 192 l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 255 (432)
+++|+.|++++|......+..++.+++|++|++.++.... ...+..++.+++|+.|++++
T Consensus 99 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~l~~~~~~l~~L~~L~Ls~ 158 (276)
T 2z62_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS----FKLPEYFSNLTNLEHLDLSS 158 (276)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC----CCCCGGGGGCTTCCEEECCS
T ss_pred CccccEEECCCCCccccCchhcccCCCCCEEECcCCccce----ecCchhhccCCCCCEEECCC
Confidence 8888888888885544444457777788888777665542 12234455555555555554
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.72 E-value=2.6e-17 Score=150.27 Aligned_cols=220 Identities=17% Similarity=0.128 Sum_probs=165.0
Q ss_pred EeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCc
Q 037465 67 GLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLI 146 (432)
Q Consensus 67 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~ 146 (432)
.+....+.. ......+++|+.|++++|.++. ++. +..+++|++|++++ +.+..++ .+..++
T Consensus 25 ~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~-------~~~-l~~l~~L~~L~l~~---------n~l~~~~-~l~~l~ 85 (272)
T 3rfs_A 25 NLKKKSVTD-AVTQNELNSIDQIIANNSDIKS-------VQG-IQYLPNVRYLALGG---------NKLHDIS-ALKELT 85 (272)
T ss_dssp HHTCSCTTS-EECHHHHTTCCEEECTTSCCCC-------CTT-GGGCTTCCEEECTT---------SCCCCCG-GGTTCT
T ss_pred HhcCccccc-ccccccccceeeeeeCCCCccc-------ccc-cccCCCCcEEECCC---------CCCCCch-hhcCCC
Confidence 334444443 2345678999999999995432 333 78899999999999 5666664 788999
Q ss_pred cccEEEeCCccccccchh-hhccCCccEEecccccccccCC-hhhhcccccceEEcCCCCccccCCccCCcccccccccc
Q 037465 147 HLKYLNLSGLCIKRLPET-LCELYNLQKLDIRWCRNLRELP-AGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGK 224 (432)
Q Consensus 147 ~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l 224 (432)
+|++|++++|.+..+++. +..+++|++|++++|. +..++ ..++.+++|++|++++|......+..++.+++|++|++
T Consensus 86 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 164 (272)
T 3rfs_A 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL 164 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCccCccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEEC
Confidence 999999999999988764 6899999999999998 54554 44788999999999999655444455789999999999
Q ss_pred eEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhh
Q 037465 225 FVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQL 304 (432)
Q Consensus 225 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 304 (432)
.++.... .....++.+++|+.|+++++.-. ...+..+..+++|+.|++++|.+
T Consensus 165 ~~n~l~~-----~~~~~~~~l~~L~~L~L~~N~l~----~~~~~~~~~l~~L~~L~l~~N~~------------------ 217 (272)
T 3rfs_A 165 SYNQLQS-----LPEGVFDKLTQLKDLRLYQNQLK----SVPDGVFDRLTSLQYIWLHDNPW------------------ 217 (272)
T ss_dssp CSSCCCC-----CCTTTTTTCTTCCEEECCSSCCS----CCCTTTTTTCTTCCEEECCSSCB------------------
T ss_pred CCCCcCc-----cCHHHhcCCccCCEEECCCCcCC----ccCHHHHhCCcCCCEEEccCCCc------------------
Confidence 9987652 23344688899999999885322 22334578899999999999982
Q ss_pred hhcCCCCCCCcEEEEeeeCCC-CCChhhhccCC
Q 037465 305 LKALQPPVNVEELWIVYYGGN-IFPKWLTSLTN 336 (432)
Q Consensus 305 ~~~l~~~~~L~~L~l~~~~~~-~~~~~l~~l~~ 336 (432)
...++.|+.+.++.+... .+|.+++.++.
T Consensus 218 ---~~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 218 ---DCTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp ---CCCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred ---cccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 244677888887766554 35766665443
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.72 E-value=4.7e-17 Score=148.40 Aligned_cols=123 Identities=24% Similarity=0.281 Sum_probs=68.2
Q ss_pred ccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCc-cccCCccccEEEeCCccccccchh
Q 037465 86 LRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE-NVGKLIHLKYLNLSGLCIKRLPET 164 (432)
Q Consensus 86 L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~lp~~ 164 (432)
.++++++++.++ . +|..+ .++|+.|++++ +.++.++. .+..+++|++|++++|.+..+|..
T Consensus 18 ~~~l~~~~~~l~-----~--ip~~~--~~~l~~L~l~~---------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~ 79 (270)
T 2o6q_A 18 KNSVDCSSKKLT-----A--IPSNI--PADTKKLDLQS---------NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG 79 (270)
T ss_dssp TTEEECTTSCCS-----S--CCSCC--CTTCSEEECCS---------SCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTT
T ss_pred CCEEEccCCCCC-----c--cCCCC--CCCCCEEECcC---------CCCCeeCHHHhcCCCCCCEEECCCCccCeeChh
Confidence 566666666432 1 22212 14566677766 45555543 566666777777766666666653
Q ss_pred -hhccCCccEEecccccccccCCh-hhhcccccceEEcCCCCccccCCccCCcccccccccceEe
Q 037465 165 -LCELYNLQKLDIRWCRNLRELPA-GIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVV 227 (432)
Q Consensus 165 -i~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~ 227 (432)
+..+++|++|++++|. +..+|. .+..+++|++|++++|......+..++.+++|++|++.++
T Consensus 80 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 143 (270)
T 2o6q_A 80 IFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143 (270)
T ss_dssp TTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred hhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC
Confidence 3556666777766666 434433 3455666666666666443333333455555555555444
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.72 E-value=5.7e-17 Score=149.34 Aligned_cols=197 Identities=17% Similarity=0.091 Sum_probs=152.8
Q ss_pred CCceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC
Q 037465 60 GGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP 139 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp 139 (432)
..+++.+.+.++++..+|..+. +++++|++++|.+ ... .+..+..+++|++|++++ +.++.++
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l-----~~~-~~~~~~~l~~L~~L~L~~---------n~l~~~~ 71 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLL-----YTF-SLATLMPYTRLTQLNLDR---------AELTKLQ 71 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCC-----SEE-EGGGGTTCTTCCEEECTT---------SCCCEEE
T ss_pred cCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcC-----Ccc-CHHHhhcCCCCCEEECCC---------CccCccc
Confidence 4568889999999999888764 6899999999954 333 456689999999999999 6788876
Q ss_pred ccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCC-hhhhcccccceEEcCCCCccccCCccCCcccc
Q 037465 140 ENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELP-AGIGKLMNMRSLLNDNTRSLKYMPIGISKLTS 218 (432)
Q Consensus 140 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ 218 (432)
.. +.+++|++|++++|.+..+|..+..+++|++|++++|. +..+| ..+..+++|+.|++++|......+..+..+++
T Consensus 72 ~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 149 (290)
T 1p9a_G 72 VD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149 (290)
T ss_dssp CC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred CC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccC
Confidence 54 78999999999999999999989999999999999998 55555 56889999999999999655444455788999
Q ss_pred cccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeecc
Q 037465 219 LRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGR 285 (432)
Q Consensus 219 L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 285 (432)
|+.|++.++.... .....+..+++|+.|++++..- .. .+..+....+|+.+++++|.
T Consensus 150 L~~L~L~~N~l~~-----l~~~~~~~l~~L~~L~L~~N~l-~~----ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 150 LEKLSLANNNLTE-----LPAGLLNGLENLDTLLLQENSL-YT----IPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCEEECTTSCCSC-----CCTTTTTTCTTCCEEECCSSCC-CC----CCTTTTTTCCCSEEECCSCC
T ss_pred CCEEECCCCcCCc-----cCHHHhcCcCCCCEEECCCCcC-Cc----cChhhcccccCCeEEeCCCC
Confidence 9999998876652 2223456677788887776322 11 23334455667777777766
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.71 E-value=2.8e-18 Score=161.68 Aligned_cols=250 Identities=13% Similarity=0.058 Sum_probs=165.4
Q ss_pred ceEEEEeecCCCCCCCcccccc--CcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccc--
Q 037465 62 KVRHLGLNFEGGAPLPMSFFEF--DRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITE-- 137 (432)
Q Consensus 62 ~i~~L~l~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~-- 137 (432)
..+++++.++.+. +..+.++ ++++.|++.+|.+ .+. ++. +..+++|++|++++| .+..
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l-----~~~-~~~-~~~~~~L~~L~L~~~---------~l~~~~ 109 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFM-----DQP-LAE-HFSPFRVQHMDLSNS---------VIEVST 109 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEE-----CSC-CCS-CCCCBCCCEEECTTC---------EECHHH
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccc-----ccc-chh-hccCCCCCEEEccCC---------CcCHHH
Confidence 3566777776655 4556666 7888998888843 333 233 557888999999884 4543
Q ss_pred cCccccCCccccEEEeCCcccc-ccchhhhccCCccEEecccccccc--cCChhhhcccccceEEcCCC-Ccccc-CCcc
Q 037465 138 IPENVGKLIHLKYLNLSGLCIK-RLPETLCELYNLQKLDIRWCRNLR--ELPAGIGKLMNMRSLLNDNT-RSLKY-MPIG 212 (432)
Q Consensus 138 lp~~~~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~--~lp~~i~~l~~L~~L~l~~~-~~~~~-~p~~ 212 (432)
+|..+..+++|++|++++|.+. ..|..++.+++|++|++++|..+. .++..+..+++|++|++++| ..... ++..
T Consensus 110 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 189 (336)
T 2ast_B 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 189 (336)
T ss_dssp HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH
T ss_pred HHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH
Confidence 6677788889999999988876 566778888899999999884344 36666788889999999888 44332 4566
Q ss_pred CCccc-ccccccceEec--ccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCC
Q 037465 213 ISKLT-SLRTLGKFVVG--GGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDG 289 (432)
Q Consensus 213 l~~l~-~L~~L~l~~~~--~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 289 (432)
+..++ +|++|++.++. ... ...+..+..+++|+.|+++++..+.+ .....+..+++|++|++++|..
T Consensus 190 ~~~l~~~L~~L~l~~~~~~~~~----~~l~~~~~~~~~L~~L~l~~~~~l~~---~~~~~l~~l~~L~~L~l~~~~~--- 259 (336)
T 2ast_B 190 VAHVSETITQLNLSGYRKNLQK----SDLSTLVRRCPNLVHLDLSDSVMLKN---DCFQEFFQLNYLQHLSLSRCYD--- 259 (336)
T ss_dssp HHHSCTTCCEEECCSCGGGSCH----HHHHHHHHHCTTCSEEECTTCTTCCG---GGGGGGGGCTTCCEEECTTCTT---
T ss_pred HHhcccCCCEEEeCCCcccCCH----HHHHHHHhhCCCCCEEeCCCCCcCCH---HHHHHHhCCCCCCEeeCCCCCC---
Confidence 77888 89999888874 221 12344566788899999988754432 3344667788999999988841
Q ss_pred chHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhcc-CCCcEEEEeCCCCCCCCC
Q 037465 290 EDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSL-TNLRNLYLSSCFNCEHLP 352 (432)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~l~ 352 (432)
........+..+++|++|++++| .. ...+..+ .+|+.|++++|...+..|
T Consensus 260 ----------~~~~~~~~l~~~~~L~~L~l~~~-i~--~~~~~~l~~~l~~L~l~~n~l~~~~~ 310 (336)
T 2ast_B 260 ----------IIPETLLELGEIPTLKTLQVFGI-VP--DGTLQLLKEALPHLQINCSHFTTIAR 310 (336)
T ss_dssp ----------CCGGGGGGGGGCTTCCEEECTTS-SC--TTCHHHHHHHSTTSEESCCCSCCTTC
T ss_pred ----------CCHHHHHHHhcCCCCCEEeccCc-cC--HHHHHHHHhhCcceEEecccCccccC
Confidence 11122234455677777777766 11 1122222 234555566665555444
No 85
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.71 E-value=1.8e-18 Score=175.74 Aligned_cols=134 Identities=14% Similarity=0.098 Sum_probs=68.5
Q ss_pred CCceEEEEeecCCCCC-CCcccc-ccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccc
Q 037465 60 GGKVRHLGLNFEGGAP-LPMSFF-EFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITE 137 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~ 137 (432)
.++++.|++.++.+.. .+..+. .+++|++|++++|. .+....++..+..+++|++|++++|. +++ .....
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~----~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~---~~~~~ 175 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE----GFSTDGLAAIAATCRNLKELDLRESD-VDD---VSGHW 175 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE----EEEHHHHHHHHHHCTTCCEEECTTCE-EEC---CCGGG
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC----CCCHHHHHHHHHhCCCCCEEeCcCCc-cCC---cchHH
Confidence 3456666666665443 222232 46677777777663 22222244445567777777777642 111 01111
Q ss_pred cCccccCCccccEEEeCCcc--cc--ccchhhhccCCccEEecccccccccCChhhhcccccceEEcC
Q 037465 138 IPENVGKLIHLKYLNLSGLC--IK--RLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLND 201 (432)
Q Consensus 138 lp~~~~~l~~L~~L~L~~~~--l~--~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~ 201 (432)
++.....+++|++|++++|. +. .++..+..+++|++|++++|.....+|..+..+++|++|++.
T Consensus 176 l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 176 LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243 (594)
T ss_dssp GGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred HHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence 22223355667777776664 21 233233445677777776664344455555555555555543
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=3.8e-17 Score=146.21 Aligned_cols=198 Identities=17% Similarity=0.192 Sum_probs=102.0
Q ss_pred cccEEEeCCccccccch-hhhccCCccEEecccccccccCCh-hhhcccccceEEcCC-CCccccCC-ccCCcccccccc
Q 037465 147 HLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLRELPA-GIGKLMNMRSLLNDN-TRSLKYMP-IGISKLTSLRTL 222 (432)
Q Consensus 147 ~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~-~~~~~~~p-~~l~~l~~L~~L 222 (432)
+|++|++++|.++.+|+ .+..+++|++|++++|..+..++. .+..+++|++|++++ | .+..++ ..+..+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n-~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR-NLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET-TCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC-CeeEcCHHHhCCCCCCCEE
Confidence 55555555555555554 455555556665555542333333 344555566666655 3 223333 344556666666
Q ss_pred cceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeec-cccCCchHHHhhhhhhh
Q 037465 223 GKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFG-RVVDGEDEERRRKKEKD 301 (432)
Q Consensus 223 ~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~ 301 (432)
++.++.... ++.+..+++|+ .|+.|++++| .+ .
T Consensus 111 ~l~~n~l~~-------lp~~~~l~~L~-------------------------~L~~L~l~~N~~l--------------~ 144 (239)
T 2xwt_C 111 GIFNTGLKM-------FPDLTKVYSTD-------------------------IFFILEITDNPYM--------------T 144 (239)
T ss_dssp EEEEECCCS-------CCCCTTCCBCC-------------------------SEEEEEEESCTTC--------------C
T ss_pred eCCCCCCcc-------ccccccccccc-------------------------cccEEECCCCcch--------------h
Confidence 665554431 11133333333 0113333333 20 0
Q ss_pred HhhhhcCCCCCCCc-EEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCC--CCCCc-c-cceEeccccccccccCcc
Q 037465 302 EQLLKALQPPVNVE-ELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLP--PLGKL-P-LEKLTLYNLKSVKRVGNE 376 (432)
Q Consensus 302 ~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~--~~~~l-~-L~~L~l~~c~~l~~~~~~ 376 (432)
......+..+++|+ .|+++++....+|......++|+.|++++|..++.++ .++.+ + |+.|+++++. ++.++..
T Consensus 145 ~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~ 223 (239)
T 2xwt_C 145 SIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSK 223 (239)
T ss_dssp EECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCCT
T ss_pred hcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cccCChh
Confidence 00111233444555 5555555555555544444778888888885344443 35677 7 8888888876 6666542
Q ss_pred ccCCCCCCCCCCCCCCCCcceEEEeCCccc
Q 037465 377 FLGIEESSEDDPSSSSSSSSELSIEGCPLL 406 (432)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~L~~L~i~~cp~L 406 (432)
.+++|+.|.+.+++.|
T Consensus 224 --------------~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 224 --------------GLEHLKELIARNTWTL 239 (239)
T ss_dssp --------------TCTTCSEEECTTC---
T ss_pred --------------HhccCceeeccCccCC
Confidence 4778888888887654
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.70 E-value=3.1e-17 Score=152.72 Aligned_cols=227 Identities=17% Similarity=0.112 Sum_probs=123.9
Q ss_pred CcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccc--cCCccccEEEeCCcccccc
Q 037465 84 DRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENV--GKLIHLKYLNLSGLCIKRL 161 (432)
Q Consensus 84 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~--~~l~~L~~L~L~~~~l~~l 161 (432)
..++.+.+.++.++...+.. +.. +..+++|++|++++| ...+..|..+ ..+++|++|++++|.+...
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~--~~~-~~~~~~L~~L~l~~n--------~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~ 132 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVG--ALR-VLAYSRLKELTLEDL--------KITGTMPPLPLEATGLALSSLRLRNVSWATG 132 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHH--HHH-HHHHSCCCEEEEESC--------CCBSCCCCCSSSCCCBCCSSCEEESCCCSST
T ss_pred cceeEEEEeCCcCCHHHHHH--HHH-hcccCceeEEEeeCC--------EeccchhhhhhhccCCCCCEEEeecccccch
Confidence 34667777776432211111 111 223466888888874 2233446555 7778888888888876632
Q ss_pred -c----hhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCcccc--CC--ccCCcccccccccceEeccccc
Q 037465 162 -P----ETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKY--MP--IGISKLTSLRTLGKFVVGGGVD 232 (432)
Q Consensus 162 -p----~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~--~p--~~l~~l~~L~~L~l~~~~~~~~ 232 (432)
+ ..+..+++|++|++++|......|..++.+++|++|++++|...+. ++ ..++.+++|++|++.+|...
T Consensus 133 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-- 210 (310)
T 4glp_A 133 RSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-- 210 (310)
T ss_dssp TSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC--
T ss_pred hhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC--
Confidence 1 2334577777777777774444445566777777777777754321 11 11244555555555544332
Q ss_pred CCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCC--
Q 037465 233 GSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQP-- 310 (432)
Q Consensus 233 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-- 310 (432)
..+......+..+++|++|++++|.+.+. .+..+..
T Consensus 211 ----------------------------~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~--------------~p~~~~~~~ 248 (310)
T 4glp_A 211 ----------------------------TPTGVCAALAAAGVQPHSLDLSHNSLRAT--------------VNPSAPRCM 248 (310)
T ss_dssp ----------------------------CHHHHHHHHHHHTCCCSSEECTTSCCCCC--------------CCSCCSSCC
T ss_pred ----------------------------chHHHHHHHHhcCCCCCEEECCCCCCCcc--------------chhhHHhcc
Confidence 11111111234455666666666652111 1112222
Q ss_pred -CCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCCCCCCcc-cceEeccccc
Q 037465 311 -PVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTLYNLK 368 (432)
Q Consensus 311 -~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~l~-L~~L~l~~c~ 368 (432)
+++|++|++++|....+|.++. ++|+.|++++|. ++.+|.+..+| |+.|++++++
T Consensus 249 ~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 249 WSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNR-LNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCC-CCSCCCTTSCCCCSCEECSSTT
T ss_pred CcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCc-CCCCchhhhCCCccEEECcCCC
Confidence 2566666666666666665543 677777777773 34445556667 7777777765
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.68 E-value=2.5e-16 Score=140.84 Aligned_cols=138 Identities=17% Similarity=0.209 Sum_probs=97.7
Q ss_pred CCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCc-cccCCccccE
Q 037465 72 GGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE-NVGKLIHLKY 150 (432)
Q Consensus 72 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~-~~~~l~~L~~ 150 (432)
.+..+|. +. ++|++|++++|.+ +. +.+..|..+++|++|++++| ..++.++. .+.++++|++
T Consensus 22 ~l~~ip~-~~--~~l~~L~l~~n~l-----~~-i~~~~~~~l~~L~~L~l~~n--------~~l~~i~~~~f~~l~~L~~ 84 (239)
T 2xwt_C 22 DIQRIPS-LP--PSTQTLKLIETHL-----RT-IPSHAFSNLPNISRIYVSID--------VTLQQLESHSFYNLSKVTH 84 (239)
T ss_dssp SCSSCCC-CC--TTCCEEEEESCCC-----SE-ECTTTTTTCTTCCEEEEECC--------SSCCEECTTTEESCTTCCE
T ss_pred CccccCC-CC--CcccEEEEeCCcc-----eE-ECHHHccCCCCCcEEeCCCC--------CCcceeCHhHcCCCcCCcE
Confidence 3566666 43 3788899988854 22 24445788888999999883 23777754 6788888999
Q ss_pred EEeCC-ccccccch-hhhccCCccEEecccccccccCChhhhcccccc---eEEcCCCCccccCC-ccCCcccccc-ccc
Q 037465 151 LNLSG-LCIKRLPE-TLCELYNLQKLDIRWCRNLRELPAGIGKLMNMR---SLLNDNTRSLKYMP-IGISKLTSLR-TLG 223 (432)
Q Consensus 151 L~L~~-~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~---~L~l~~~~~~~~~p-~~l~~l~~L~-~L~ 223 (432)
|++++ |.++.+|. .+..+++|++|++++|. +..+|. +..+++|+ .|++++|.....+| ..+..+++|+ .|+
T Consensus 85 L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~ 162 (239)
T 2xwt_C 85 IEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLK 162 (239)
T ss_dssp EEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEE
T ss_pred EECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEE
Confidence 99988 77887774 57788888888888887 556775 77777777 88888874444444 3466677777 776
Q ss_pred ceEec
Q 037465 224 KFVVG 228 (432)
Q Consensus 224 l~~~~ 228 (432)
+.++.
T Consensus 163 l~~n~ 167 (239)
T 2xwt_C 163 LYNNG 167 (239)
T ss_dssp CCSCC
T ss_pred cCCCC
Confidence 65543
No 89
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.68 E-value=1.1e-18 Score=177.39 Aligned_cols=318 Identities=14% Similarity=0.071 Sum_probs=164.1
Q ss_pred CCceEEEEeecC-CCCC--CCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcc-
Q 037465 60 GGKVRHLGLNFE-GGAP--LPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLI- 135 (432)
Q Consensus 60 ~~~i~~L~l~~~-~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~- 135 (432)
.++++.|.+.++ .+.. ++..+.++++|++|++++|.++... ...++.....+++|++|++++|. ..+
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~--~~~l~~~~~~~~~L~~L~l~~~~-------~~~~ 199 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVS--GHWLSHFPDTYTSLVSLNISCLA-------SEVS 199 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCC--GGGGGGSCTTCCCCCEEECTTCC-------SCCC
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcc--hHHHHHHhhcCCcCcEEEecccC-------CcCC
Confidence 568888888877 3332 3344457888999999888543211 11134434567788888888751 011
Q ss_pred -cccCccccCCccccEEEeCCcc-ccccchhhhccCCccEEecccccc------------------------------cc
Q 037465 136 -TEIPENVGKLIHLKYLNLSGLC-IKRLPETLCELYNLQKLDIRWCRN------------------------------LR 183 (432)
Q Consensus 136 -~~lp~~~~~l~~L~~L~L~~~~-l~~lp~~i~~l~~L~~L~l~~~~~------------------------------~~ 183 (432)
..++..+..+++|++|++++|. +..+|..+..+++|+.|++.++.. ..
T Consensus 200 ~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~ 279 (594)
T 2p1m_B 200 FSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPA 279 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGG
T ss_pred HHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchh
Confidence 1122223456888888888773 556666667777777776543310 12
Q ss_pred cCChhhhcccccceEEcCCCCcccc-CCccCCcccccccccceEecccccCCCCcCcccc-ccCccCCceeeCCC-----
Q 037465 184 ELPAGIGKLMNMRSLLNDNTRSLKY-MPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESL-KNLQLLRECGIEGL----- 256 (432)
Q Consensus 184 ~lp~~i~~l~~L~~L~l~~~~~~~~-~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~----- 256 (432)
.++..+..+++|+.|++++|..... ++..+..+++|++|++.++ .. ...+..+ ..+++|+.|++.++
T Consensus 280 ~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~-----~~~l~~l~~~~~~L~~L~L~~~~~~g~ 353 (594)
T 2p1m_B 280 YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IE-----DAGLEVLASTCKDLRELRVFPSEPFVM 353 (594)
T ss_dssp GGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GH-----HHHHHHHHHHCTTCCEEEEECSCTTCS
T ss_pred hHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cC-----HHHHHHHHHhCCCCCEEEEecCccccc
Confidence 2343444678888888888863221 1222456778888887765 22 1122222 24667777777332
Q ss_pred ---CCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhh------------------hhhh----hHhhhhcCCCC
Q 037465 257 ---GNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRR------------------KKEK----DEQLLKALQPP 311 (432)
Q Consensus 257 ---~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~------------------~~~~----~~~~~~~l~~~ 311 (432)
..+.+ .........+++|+.|.+..+.+.+........ .... ...+...+..+
T Consensus 354 ~~~~~l~~--~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~ 431 (594)
T 2p1m_B 354 EPNVALTE--QGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHC 431 (594)
T ss_dssp SCSSCCCH--HHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHC
T ss_pred ccCCCCCH--HHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhC
Confidence 22221 111111123455555544444421100000000 0000 01111223334
Q ss_pred CCCcEEEEeeeCCCCCChhhh-ccCCCcEEEEeCCCCCC-CCCCC-CCcc-cceEeccccccccccCccccCCCCCCCCC
Q 037465 312 VNVEELWIVYYGGNIFPKWLT-SLTNLRNLYLSSCFNCE-HLPPL-GKLP-LEKLTLYNLKSVKRVGNEFLGIEESSEDD 387 (432)
Q Consensus 312 ~~L~~L~l~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~-~l~~~-~~l~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 387 (432)
++|++|++++......+..+. .+++|+.|++++|.... .+..+ ..+| |+.|+|++|+. +..+.....
T Consensus 432 ~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~-------- 502 (594)
T 2p1m_B 432 KDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANA-------- 502 (594)
T ss_dssp TTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTG--------
T ss_pred CCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHH--------
Confidence 455555554411111122222 36777777777775322 12222 4467 88888888873 433222111
Q ss_pred CCCCCCCcceEEEeCCcc
Q 037465 388 PSSSSSSSSELSIEGCPL 405 (432)
Q Consensus 388 ~~~~~~~L~~L~i~~cp~ 405 (432)
..+++|+.|++++|+.
T Consensus 503 --~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 503 --SKLETMRSLWMSSCSV 518 (594)
T ss_dssp --GGGGGSSEEEEESSCC
T ss_pred --HhCCCCCEEeeeCCCC
Confidence 1378999999999976
No 90
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.67 E-value=1.3e-17 Score=158.74 Aligned_cols=231 Identities=13% Similarity=0.073 Sum_probs=112.1
Q ss_pred EeecCCCCC-CCccccccCcccEEEEecCCcCccCccCCcchhhhccCC-cceEEEeCCCCCCCCCCCCccccc-Ccccc
Q 037465 67 GLNFEGGAP-LPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLA-CLRALVISQSSSFSHPGPNLITEI-PENVG 143 (432)
Q Consensus 67 ~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~~~~~~~~~~~~~~~l-p~~~~ 143 (432)
.++.+.+.. +|..+...++|++|++++|.++.... ..+...+..++ +|++|++++ +.++.. +..+.
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~--~~l~~~l~~~~~~L~~L~Ls~---------N~l~~~~~~~l~ 72 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSIST--VELIQAFANTPASVTSLNLSG---------NSLGFKNSDELV 72 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCH--HHHHHHHHTCCTTCCEEECCS---------SCGGGSCHHHHH
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHH--HHHHHHHHhCCCceeEEECcC---------CCCCHHHHHHHH
Confidence 445555554 33333444457777777774422110 00114466666 777777777 444443 33343
Q ss_pred CC-----ccccEEEeCCccccccch-h----hhcc-CCccEEecccccccccCChhhh----c-ccccceEEcCCCCccc
Q 037465 144 KL-----IHLKYLNLSGLCIKRLPE-T----LCEL-YNLQKLDIRWCRNLRELPAGIG----K-LMNMRSLLNDNTRSLK 207 (432)
Q Consensus 144 ~l-----~~L~~L~L~~~~l~~lp~-~----i~~l-~~L~~L~l~~~~~~~~lp~~i~----~-l~~L~~L~l~~~~~~~ 207 (432)
.+ ++|++|++++|.++..+. . +..+ ++|++|++++|......+..+. . .++|++|++++|....
T Consensus 73 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 152 (362)
T 3goz_A 73 QILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI 152 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred HHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence 33 677777777777664332 2 3333 6777777777763332222332 2 2477777777775443
Q ss_pred c----CCccCCccc-ccccccceEecccccCCCCcCcc----ccccC-ccCCceeeCCCCCCCCchhhhhccccc-ccCC
Q 037465 208 Y----MPIGISKLT-SLRTLGKFVVGGGVDGSSTCRLE----SLKNL-QLLRECGIEGLGNVSHLDEAERLQLYN-QQNL 276 (432)
Q Consensus 208 ~----~p~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~----~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~l~~-~~~L 276 (432)
. ++..+..++ +|++|++.+|.... .... .+..+ ++|+.|+++++.-........+..+.. .++|
T Consensus 153 ~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~-----~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L 227 (362)
T 3goz_A 153 KSSDELIQILAAIPANVNSLNLRGNNLAS-----KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHV 227 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGG-----SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHhcCCccccEeeecCCCCch-----hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCc
Confidence 2 222233333 66666666655432 1111 22233 356666665533211111122333333 2356
Q ss_pred ceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeC
Q 037465 277 LCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYG 323 (432)
Q Consensus 277 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 323 (432)
++|++++|.+.+.. ...+...+..+++|+.|++++|.
T Consensus 228 ~~L~Ls~N~l~~~~----------~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 228 VSLNLCLNCLHGPS----------LENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CEEECCSSCCCCCC----------HHHHHHTTTTTTTCSEEEEEHHH
T ss_pred eEEECcCCCCCcHH----------HHHHHHHHhcCCCccEEEeccCC
Confidence 66666665533221 12233344445555555555554
No 91
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.66 E-value=3.9e-17 Score=155.48 Aligned_cols=254 Identities=14% Similarity=0.048 Sum_probs=172.8
Q ss_pred EEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC-----ccccCCc-cccEEEeCCcccccc-
Q 037465 89 LLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP-----ENVGKLI-HLKYLNLSGLCIKRL- 161 (432)
Q Consensus 89 L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp-----~~~~~l~-~L~~L~L~~~~l~~l- 161 (432)
+.++.+ .+++. ++.++...++|++|++++ +.++..+ ..+..++ +|++|++++|.+...
T Consensus 3 ~~ls~n-----~~~~~-~~~~~~~~~~L~~L~Ls~---------n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 67 (362)
T 3goz_A 3 YKLTLH-----PGSNP-VEEFTSIPHGVTSLDLSL---------NNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKN 67 (362)
T ss_dssp EECCCC-----TTCCH-HHHHHTSCTTCCEEECTT---------SCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSC
T ss_pred cccccc-----cchHH-HHHHHhCCCCceEEEccC---------CCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHH
Confidence 456666 45554 667667777799999999 5677665 5677888 899999999998855
Q ss_pred chhhhcc-----CCccEEecccccccccCChhhh----cc-cccceEEcCCCCccccCCccC----Cc-ccccccccceE
Q 037465 162 PETLCEL-----YNLQKLDIRWCRNLRELPAGIG----KL-MNMRSLLNDNTRSLKYMPIGI----SK-LTSLRTLGKFV 226 (432)
Q Consensus 162 p~~i~~l-----~~L~~L~l~~~~~~~~lp~~i~----~l-~~L~~L~l~~~~~~~~~p~~l----~~-l~~L~~L~l~~ 226 (432)
+..+..+ ++|++|++++|......+..++ .+ ++|+.|++++|......+..+ .. .++|++|++.+
T Consensus 68 ~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 147 (362)
T 3goz_A 68 SDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRG 147 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTT
T ss_pred HHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccC
Confidence 4566665 9999999999994445554444 34 899999999997654433333 23 36999999998
Q ss_pred ecccccCCCCcCccccccCc-cCCceeeCCCCCCCCchhhhhcccccc-cCCceEEEeeccccCCchHHHhhhhhhhHhh
Q 037465 227 VGGGVDGSSTCRLESLKNLQ-LLRECGIEGLGNVSHLDEAERLQLYNQ-QNLLCLHLEFGRVVDGEDEERRRKKEKDEQL 304 (432)
Q Consensus 227 ~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 304 (432)
|...... .......+..++ +|+.|+++++.-...........+..+ ++|++|++++|.+.+. ....+
T Consensus 148 N~l~~~~-~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~----------~~~~l 216 (362)
T 3goz_A 148 NDLGIKS-SDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK----------SYAEL 216 (362)
T ss_dssp SCGGGSC-HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS----------CHHHH
T ss_pred CcCCHHH-HHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChh----------HHHHH
Confidence 8765310 011223334554 899999998643333333344455566 5999999999984332 22334
Q ss_pred hhcCCC-CCCCcEEEEeeeCCCCCC-----hhhhccCCCcEEEEeCCCCCCC-------C-CCCCCcc-cceEeccccc
Q 037465 305 LKALQP-PVNVEELWIVYYGGNIFP-----KWLTSLTNLRNLYLSSCFNCEH-------L-PPLGKLP-LEKLTLYNLK 368 (432)
Q Consensus 305 ~~~l~~-~~~L~~L~l~~~~~~~~~-----~~l~~l~~L~~L~l~~~~~~~~-------l-~~~~~l~-L~~L~l~~c~ 368 (432)
...+.. .++|++|++++|.....+ ..+..+++|+.|++++|..... + ..+..++ |+.|++++++
T Consensus 217 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 217 AYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 555544 458999999988776533 2334788999999999952211 1 1356778 9999999887
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.64 E-value=8.8e-16 Score=142.89 Aligned_cols=155 Identities=17% Similarity=0.009 Sum_probs=72.1
Q ss_pred eEEEEeecCCCCC-CCccc--cccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-
Q 037465 63 VRHLGLNFEGGAP-LPMSF--FEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI- 138 (432)
Q Consensus 63 i~~L~l~~~~~~~-~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l- 138 (432)
++.|.+.++.+.. .|..+ .++++|++|++++|.++... .......+..+++|++|++++ +.+..+
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~--~~~~~~~~~~~~~L~~L~Ls~---------n~l~~~~ 161 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGR--SWLAELQQWLKPGLKVLSIAQ---------AHSPAFS 161 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTT--SSHHHHHTTBCSCCCEEEEEC---------CSSCCCC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchh--hhhHHHHhhhccCCCEEEeeC---------CCcchhh
Confidence 5555555555443 33333 45555555555555332100 000011233455555555555 334433
Q ss_pred CccccCCccccEEEeCCccccc---cch--hhhccCCccEEecccccccccCChh----hhcccccceEEcCCCCccccC
Q 037465 139 PENVGKLIHLKYLNLSGLCIKR---LPE--TLCELYNLQKLDIRWCRNLRELPAG----IGKLMNMRSLLNDNTRSLKYM 209 (432)
Q Consensus 139 p~~~~~l~~L~~L~L~~~~l~~---lp~--~i~~l~~L~~L~l~~~~~~~~lp~~----i~~l~~L~~L~l~~~~~~~~~ 209 (432)
|..++.+++|++|++++|.+.. ++. .++.+++|++|++++|. +..++.. ++.+++|++|++++|......
T Consensus 162 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~ 240 (310)
T 4glp_A 162 CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRATV 240 (310)
T ss_dssp TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCC
T ss_pred HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCccc
Confidence 2345555555555555555332 221 12455555555555555 3333321 234455555555555444444
Q ss_pred CccCCcc---cccccccceEecc
Q 037465 210 PIGISKL---TSLRTLGKFVVGG 229 (432)
Q Consensus 210 p~~l~~l---~~L~~L~l~~~~~ 229 (432)
|..++.+ ++|++|++++|..
T Consensus 241 p~~~~~~~~~~~L~~L~Ls~N~l 263 (310)
T 4glp_A 241 NPSAPRCMWSSALNSLNLSFAGL 263 (310)
T ss_dssp CSCCSSCCCCTTCCCEECCSSCC
T ss_pred hhhHHhccCcCcCCEEECCCCCC
Confidence 4444443 3555555554443
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.64 E-value=2e-15 Score=142.87 Aligned_cols=237 Identities=20% Similarity=0.113 Sum_probs=150.4
Q ss_pred EEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCc-ccc
Q 037465 65 HLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE-NVG 143 (432)
Q Consensus 65 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~-~~~ 143 (432)
.+..++++++++|..+ .+++++|++++|+++ .+.+..|.++++|++|+|++| ...+.+|. .|.
T Consensus 13 ~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~------~i~~~~f~~l~~L~~L~Ls~N--------~i~~~i~~~~f~ 76 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL--PRNAIELRFVLTKLR------VIQKGAFSGFGDLEKIEISQN--------DVLEVIEADVFS 76 (350)
T ss_dssp EEEEESTTCCSCCTTC--CTTCSEEEEESCCCS------EECTTSSTTCTTCCEEEEECC--------TTCCEECTTSBC
T ss_pred EEEecCCCCCccCcCc--CCCCCEEEccCCcCC------CcCHHHHcCCCCCCEEECcCC--------CCCCccChhHhh
Confidence 3556777788888766 357888999888542 224455888889999999884 22355543 467
Q ss_pred CCccccE-EEeCCccccccc-hhhhccCCccEEecccccccccCCh-hhhcccccceEEcCCCCccccCCc-cCCccc-c
Q 037465 144 KLIHLKY-LNLSGLCIKRLP-ETLCELYNLQKLDIRWCRNLRELPA-GIGKLMNMRSLLNDNTRSLKYMPI-GISKLT-S 218 (432)
Q Consensus 144 ~l~~L~~-L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~-~l~~l~-~ 218 (432)
++++|+. +.+..|++..++ ..+..+++|++|++++|. +..+|. ......++..|++.++..+..++. .+..+. .
T Consensus 77 ~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~ 155 (350)
T 4ay9_X 77 NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFE 155 (350)
T ss_dssp SCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSS
T ss_pred cchhhhhhhcccCCcccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchh
Confidence 7777665 455566788775 457788889999888887 555543 344566777788776655565553 233333 4
Q ss_pred cccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhh
Q 037465 219 LRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKK 298 (432)
Q Consensus 219 L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 298 (432)
++.|++.++.... .........+|+.+.+.+...+..++
T Consensus 156 l~~L~L~~N~i~~------i~~~~f~~~~L~~l~l~~~n~l~~i~----------------------------------- 194 (350)
T 4ay9_X 156 SVILWLNKNGIQE------IHNSAFNGTQLDELNLSDNNNLEELP----------------------------------- 194 (350)
T ss_dssp CEEEECCSSCCCE------ECTTSSTTEEEEEEECTTCTTCCCCC-----------------------------------
T ss_pred hhhhccccccccC------CChhhccccchhHHhhccCCcccCCC-----------------------------------
Confidence 6666666554432 12222222334444444322222211
Q ss_pred hhhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCCCCCCcc-cceEecccc
Q 037465 299 EKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTLYNL 367 (432)
Q Consensus 299 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~l~-L~~L~l~~c 367 (432)
...+..+++|+.|++++|....+|.. .+.+|+.|.+.++..++.+|.+..++ |+.+++.+.
T Consensus 195 ------~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 195 ------NDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYP 256 (350)
T ss_dssp ------TTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSCH
T ss_pred ------HHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCCchhCcChhhCcCCCC
Confidence 12344556666666666666666653 47888888888888888899888899 999988753
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.64 E-value=1.4e-15 Score=143.96 Aligned_cols=230 Identities=16% Similarity=0.135 Sum_probs=128.8
Q ss_pred CcccccCccccCCccccEEEeCCccccccch-hhhccCCccEEecccccccccCChh-hhcccccceEEcCCCCccccC-
Q 037465 133 NLITEIPENVGKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLRELPAG-IGKLMNMRSLLNDNTRSLKYM- 209 (432)
Q Consensus 133 ~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~- 209 (432)
+.++++|..+ .+++++|+|++|.|+.+|+ .+..+++|++|++++|...+.+|.. +..++++.++....+..+..+
T Consensus 19 ~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~ 96 (350)
T 4ay9_X 19 SKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN 96 (350)
T ss_dssp TTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC
T ss_pred CCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC
Confidence 4455555444 2455555555555555554 3455555666666555544444432 344555544333222233333
Q ss_pred CccCCcccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccc-cCCceEEEeeccccC
Q 037465 210 PIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQ-QNLLCLHLEFGRVVD 288 (432)
Q Consensus 210 p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~ 288 (432)
|..+..+++|++|++.++.... .....+....++..+++.+...+...+ ...+..+ ..++.|++++|.+
T Consensus 97 ~~~f~~l~~L~~L~l~~n~l~~-----~~~~~~~~~~~l~~l~l~~~~~i~~l~---~~~f~~~~~~l~~L~L~~N~i-- 166 (350)
T 4ay9_X 97 PEAFQNLPNLQYLLISNTGIKH-----LPDVHKIHSLQKVLLDIQDNINIHTIE---RNSFVGLSFESVILWLNKNGI-- 166 (350)
T ss_dssp TTSBCCCTTCCEEEEEEECCSS-----CCCCTTCCBSSCEEEEEESCTTCCEEC---TTSSTTSBSSCEEEECCSSCC--
T ss_pred chhhhhcccccccccccccccc-----CCchhhcccchhhhhhhcccccccccc---ccchhhcchhhhhhccccccc--
Confidence 3445556666666666555432 111112222334444544433332211 1122232 4578888888872
Q ss_pred CchHHHhhhhhhhHhhhhcCCCCCCCcEEEEee-eCCCCCCh-hhhccCCCcEEEEeCCCCCCCCCCCCCcc-cceEecc
Q 037465 289 GEDEERRRKKEKDEQLLKALQPPVNVEELWIVY-YGGNIFPK-WLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTLY 365 (432)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~l~~~~~l~-L~~L~l~ 365 (432)
..+........+|+++.+.+ +....+|. .+..+++|+.|++++| .++.+|. +.+. |+.|.+.
T Consensus 167 -------------~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~-~~~~~L~~L~~l 231 (350)
T 4ay9_X 167 -------------QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPS-YGLENLKKLRAR 231 (350)
T ss_dssp -------------CEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCS-SSCTTCCEEECT
T ss_pred -------------cCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccCh-hhhccchHhhhc
Confidence 23333444456788888864 55666665 4568999999999999 5666765 4477 8888888
Q ss_pred ccccccccCccccCCCCCCCCCCCCCCCCcceEEEeC
Q 037465 366 NLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELSIEG 402 (432)
Q Consensus 366 ~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~ 402 (432)
++.+++.+|.- ..+++|+.+++..
T Consensus 232 ~~~~l~~lP~l-------------~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 232 STYNLKKLPTL-------------EKLVALMEASLTY 255 (350)
T ss_dssp TCTTCCCCCCT-------------TTCCSCCEEECSC
T ss_pred cCCCcCcCCCc-------------hhCcChhhCcCCC
Confidence 88888888741 2478888888864
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.64 E-value=2e-15 Score=135.98 Aligned_cols=170 Identities=19% Similarity=0.190 Sum_probs=117.7
Q ss_pred eEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-Ccc
Q 037465 63 VRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-PEN 141 (432)
Q Consensus 63 i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-p~~ 141 (432)
.+.+++.++.+..+|..+. +.++.|++++|.+ .+. .+..+..+++|++|++++ +.+..+ +..
T Consensus 16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l-----~~~-~~~~~~~l~~L~~L~L~~---------n~l~~~~~~~ 78 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGL-----ATL-SDATFRGLTKLTWLNLDY---------NQLQTLSAGV 78 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC--TTCCEEECTTSCC-----CCC-CTTTTTTCTTCCEEECTT---------SCCCCCCTTT
T ss_pred CeEEecCCCCccccCCCCC--CCCCEEEccCCCc-----Ccc-CHhHhcCcccCCEEECCC---------CcCCccCHhH
Confidence 4457777888887777664 5788888888843 332 444578888888888888 556666 445
Q ss_pred ccCCccccEEEeCCccccccch-hhhccCCccEEecccccccccCChh-hhcccccceEEcCCCCccccCCccCCccccc
Q 037465 142 VGKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLRELPAG-IGKLMNMRSLLNDNTRSLKYMPIGISKLTSL 219 (432)
Q Consensus 142 ~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L 219 (432)
+..+++|++|++++|.+..+|. .+..+++|++|++++|. +..+|.. +..+++|++|++++|......+..++.+++|
T Consensus 79 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 157 (251)
T 3m19_A 79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCC
Confidence 7788888888888888887764 46788888888888887 5555544 5678888888888885443333457778888
Q ss_pred ccccceEecccccCCCCcCccccccCccCCceeeCC
Q 037465 220 RTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEG 255 (432)
Q Consensus 220 ~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 255 (432)
++|++.++.... .....+..+++|+.+++.+
T Consensus 158 ~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 158 QTLSLSTNQLQS-----VPHGAFDRLGKLQTITLFG 188 (251)
T ss_dssp CEEECCSSCCSC-----CCTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCcCCc-----cCHHHHhCCCCCCEEEeeC
Confidence 888887765542 1223344555555555554
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.62 E-value=4.8e-15 Score=128.31 Aligned_cols=150 Identities=17% Similarity=0.165 Sum_probs=104.8
Q ss_pred CCceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccc-c
Q 037465 60 GGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITE-I 138 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~-l 138 (432)
..+++.+++.++.+..++ .+..+++|++|++++|.+. . ++ .+..+++|++|++++ +.++. .
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~-----~--~~-~l~~l~~L~~L~l~~---------n~l~~~~ 104 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHAT-----N--YN-PISGLSNLERLRIMG---------KDVTSDK 104 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCS-----C--CG-GGTTCTTCCEEEEEC---------TTCBGGG
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCC-----c--ch-hhhcCCCCCEEEeEC---------CccCccc
Confidence 456777888888777766 5777888888888887432 1 23 367788888888887 44544 4
Q ss_pred CccccCCccccEEEeCCccccc-cchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccc
Q 037465 139 PENVGKLIHLKYLNLSGLCIKR-LPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLT 217 (432)
Q Consensus 139 p~~~~~l~~L~~L~L~~~~l~~-lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~ 217 (432)
|..+..+++|++|++++|.+.. .|..+..+++|++|++++|..+..+| .+..+++|+.|++++|.. ..++ .+..++
T Consensus 105 ~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i-~~~~-~l~~l~ 181 (197)
T 4ezg_A 105 IPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGV-HDYR-GIEDFP 181 (197)
T ss_dssp SCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCC-CCCT-TGGGCS
T ss_pred ChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCC-cChH-HhccCC
Confidence 6677778888888888888764 56677788888888888876566665 577788888888888744 3344 566777
Q ss_pred ccccccceEeccc
Q 037465 218 SLRTLGKFVVGGG 230 (432)
Q Consensus 218 ~L~~L~l~~~~~~ 230 (432)
+|++|++.++...
T Consensus 182 ~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 182 KLNQLYAFSQTIG 194 (197)
T ss_dssp SCCEEEECBC---
T ss_pred CCCEEEeeCcccC
Confidence 7777777766543
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.62 E-value=4.1e-15 Score=136.95 Aligned_cols=170 Identities=22% Similarity=0.247 Sum_probs=85.6
Q ss_pred cccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccccc
Q 037465 81 FEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKR 160 (432)
Q Consensus 81 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~ 160 (432)
..+++|++|++++|.++. ++. +..+++|++|++++ +.++.++. +..+++|++|++++|.+..
T Consensus 43 ~~l~~L~~L~l~~~~i~~-------~~~-~~~l~~L~~L~L~~---------n~l~~~~~-l~~l~~L~~L~l~~n~l~~ 104 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKS-------VQG-IQYLPNVTKLFLNG---------NKLTDIKP-LANLKNLGWLFLDENKVKD 104 (291)
T ss_dssp HHHHTCCEEECTTSCCCC-------CTT-GGGCTTCCEEECCS---------SCCCCCGG-GTTCTTCCEEECCSSCCCC
T ss_pred hhcCcccEEEccCCCccc-------Chh-HhcCCCCCEEEccC---------CccCCCcc-cccCCCCCEEECCCCcCCC
Confidence 345555555555553321 122 44555555555555 34444443 5555555555555555555
Q ss_pred cchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCcCcc
Q 037465 161 LPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLE 240 (432)
Q Consensus 161 lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 240 (432)
+| .+..+++|++|++++|. +..+ ..+..+++|+.|++++|.... + ..++.+++|++|++.++.... ..
T Consensus 105 ~~-~l~~l~~L~~L~L~~n~-i~~~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~------~~- 172 (291)
T 1h6t_A 105 LS-SLKDLKKLKSLSLEHNG-ISDI-NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISD------IV- 172 (291)
T ss_dssp GG-GGTTCTTCCEEECTTSC-CCCC-GGGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCC------CG-
T ss_pred Ch-hhccCCCCCEEECCCCc-CCCC-hhhcCCCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCcccc------ch-
Confidence 44 25555555555555554 3333 234555555555555553222 2 334555555555555554332 11
Q ss_pred ccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccc
Q 037465 241 SLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRV 286 (432)
Q Consensus 241 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 286 (432)
.+..+++|+.|+++++.- ... ..+..+++|+.|++++|.+
T Consensus 173 ~l~~l~~L~~L~L~~N~i-~~l-----~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 173 PLAGLTKLQNLYLSKNHI-SDL-----RALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp GGTTCTTCCEEECCSSCC-CBC-----GGGTTCTTCSEEEEEEEEE
T ss_pred hhcCCCccCEEECCCCcC-CCC-----hhhccCCCCCEEECcCCcc
Confidence 155555666666555321 111 2356677788888877763
No 98
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.60 E-value=6.6e-15 Score=132.60 Aligned_cols=156 Identities=24% Similarity=0.288 Sum_probs=131.7
Q ss_pred CCceEEEEeecCCCCCCCc-cccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465 60 GGKVRHLGLNFEGGAPLPM-SFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI 138 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l 138 (432)
...++.|.+.++.+..++. .+.++++|++|++++|.+ .+. .+..+..+++|++|++++ +.++.+
T Consensus 34 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-----~~~-~~~~~~~l~~L~~L~L~~---------n~l~~~ 98 (251)
T 3m19_A 34 PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-----QTL-SAGVFDDLTELGTLGLAN---------NQLASL 98 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC-----CCC-CTTTTTTCTTCCEEECTT---------SCCCCC
T ss_pred CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcC-----Ccc-CHhHhccCCcCCEEECCC---------Cccccc
Confidence 5689999999999988554 689999999999999954 333 556689999999999999 677777
Q ss_pred C-ccccCCccccEEEeCCccccccchh-hhccCCccEEecccccccccCCh-hhhcccccceEEcCCCCccccCCccCCc
Q 037465 139 P-ENVGKLIHLKYLNLSGLCIKRLPET-LCELYNLQKLDIRWCRNLRELPA-GIGKLMNMRSLLNDNTRSLKYMPIGISK 215 (432)
Q Consensus 139 p-~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~l~~ 215 (432)
| ..+..+++|++|++++|.+..+|.. +..+++|++|++++|. +..+|. .+..+++|++|++++|......+..+..
T Consensus 99 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 177 (251)
T 3m19_A 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177 (251)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred ChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhC
Confidence 5 4578899999999999999988865 6889999999999998 666665 6889999999999999666555557889
Q ss_pred ccccccccceEecccc
Q 037465 216 LTSLRTLGKFVVGGGV 231 (432)
Q Consensus 216 l~~L~~L~l~~~~~~~ 231 (432)
+++|+.|++.++....
T Consensus 178 l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 178 LGKLQTITLFGNQFDC 193 (251)
T ss_dssp CTTCCEEECCSCCBCT
T ss_pred CCCCCEEEeeCCceeC
Confidence 9999999999887653
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.60 E-value=7.1e-15 Score=135.38 Aligned_cols=165 Identities=16% Similarity=0.185 Sum_probs=93.0
Q ss_pred CCceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC
Q 037465 60 GGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP 139 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp 139 (432)
..+++.+.+.++.+..++ .+..+++|++|++++|.++ + ++. +..+++|++|++++ +.++.+|
T Consensus 45 l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~-----~--~~~-l~~l~~L~~L~l~~---------n~l~~~~ 106 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLT-----D--IKP-LANLKNLGWLFLDE---------NKVKDLS 106 (291)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCC-----C--CGG-GTTCTTCCEEECCS---------SCCCCGG
T ss_pred cCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccC-----C--Ccc-cccCCCCCEEECCC---------CcCCCCh
Confidence 345666666666665543 3556666666666666432 2 222 55666666666666 4455544
Q ss_pred ccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccccc
Q 037465 140 ENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSL 219 (432)
Q Consensus 140 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L 219 (432)
.+..+++|++|++++|.+..++ .+..+++|++|++++|. +..+ ..+..+++|+.|++++|... .++. +..+++|
T Consensus 107 -~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N~l~-~~~~-l~~l~~L 180 (291)
T 1h6t_A 107 -SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKL 180 (291)
T ss_dssp -GGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCC-CCGG-GTTCTTC
T ss_pred -hhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEEccCCccc-cchh-hcCCCcc
Confidence 2566666666666666666553 45566666666666665 4444 35566666666666666333 2333 5566666
Q ss_pred ccccceEecccccCCCCcCccccccCccCCceeeCC
Q 037465 220 RTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEG 255 (432)
Q Consensus 220 ~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 255 (432)
++|++.++.... ...+..+++|+.|++++
T Consensus 181 ~~L~L~~N~i~~-------l~~l~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 181 QNLYLSKNHISD-------LRALAGLKNLDVLELFS 209 (291)
T ss_dssp CEEECCSSCCCB-------CGGGTTCTTCSEEEEEE
T ss_pred CEEECCCCcCCC-------ChhhccCCCCCEEECcC
Confidence 666666554432 23355566666666554
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.59 E-value=4.5e-15 Score=128.52 Aligned_cols=132 Identities=17% Similarity=0.161 Sum_probs=95.7
Q ss_pred ccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCcccc
Q 037465 80 FFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIK 159 (432)
Q Consensus 80 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~ 159 (432)
..++++|++|++++|.++ . ++ .+..+++|++|++++ +.+..++ .+..+++|++|++++|.+.
T Consensus 40 ~~~l~~L~~L~l~~n~i~------~-l~-~l~~l~~L~~L~l~~---------n~~~~~~-~l~~l~~L~~L~l~~n~l~ 101 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT------D-LT-GIEYAHNIKDLTINN---------IHATNYN-PISGLSNLERLRIMGKDVT 101 (197)
T ss_dssp HHHHHTCCEEEEESSCCS------C-CT-TGGGCTTCSEEEEES---------CCCSCCG-GGTTCTTCCEEEEECTTCB
T ss_pred hhhcCCccEEeccCCCcc------C-hH-HHhcCCCCCEEEccC---------CCCCcch-hhhcCCCCCEEEeECCccC
Confidence 366788888888888542 2 33 377788888888888 4454443 6777888888888888877
Q ss_pred c-cchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccccccceEeccc
Q 037465 160 R-LPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGG 230 (432)
Q Consensus 160 ~-lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~ 230 (432)
. .|..+..+++|++|++++|......|..++.+++|++|++++|.....+| .+..+++|+.|++.++...
T Consensus 102 ~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp GGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC
T ss_pred cccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc
Confidence 4 56678888888888888887555567778888888888888886455555 4666777777776655443
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.57 E-value=1.7e-14 Score=127.12 Aligned_cols=151 Identities=19% Similarity=0.122 Sum_probs=123.3
Q ss_pred EEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCc-ccc
Q 037465 65 HLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE-NVG 143 (432)
Q Consensus 65 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~-~~~ 143 (432)
.++++++.+..+|..+. +.+++|++++|.++ .......|..+++|++|++++ +.++.++. .+.
T Consensus 15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~-----~~~~~~~~~~l~~L~~L~L~~---------N~i~~i~~~~~~ 78 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNEFT-----VLEATGIFKKLPQLRKINFSN---------NKITDIEEGAFE 78 (220)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCC-----EECCCCCGGGCTTCCEEECCS---------SCCCEECTTTTT
T ss_pred EeEeCCCCcccCccCCC--CCCCEEEcCCCcCC-----ccCchhhhccCCCCCEEECCC---------CcCCEECHHHhC
Confidence 67888888888887664 45789999999543 322234578999999999999 67877754 789
Q ss_pred CCccccEEEeCCccccccch-hhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccccc
Q 037465 144 KLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTL 222 (432)
Q Consensus 144 ~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L 222 (432)
.+++|++|++++|.+..+++ .+..+++|++|++++|......|..+..+++|+.|++++|......|..+..+++|+.|
T Consensus 79 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 158 (220)
T 2v70_A 79 GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL 158 (220)
T ss_dssp TCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEE
Confidence 99999999999999988875 48889999999999998555557778899999999999997766667888999999999
Q ss_pred cceEecccc
Q 037465 223 GKFVVGGGV 231 (432)
Q Consensus 223 ~l~~~~~~~ 231 (432)
++.++....
T Consensus 159 ~L~~N~l~c 167 (220)
T 2v70_A 159 NLLANPFNC 167 (220)
T ss_dssp ECCSCCEEC
T ss_pred EecCcCCcC
Confidence 998887654
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.56 E-value=1.4e-14 Score=146.36 Aligned_cols=166 Identities=17% Similarity=0.208 Sum_probs=120.9
Q ss_pred CCceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC
Q 037465 60 GGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP 139 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp 139 (432)
..+++.|.+.++.+..++ .+..+++|+.|++++|.+ .+ ++. +..+++|+.|+|++ +.+..+|
T Consensus 42 L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l-----~~--~~~-l~~l~~L~~L~Ls~---------N~l~~l~ 103 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKL-----TD--IKP-LTNLKNLGWLFLDE---------NKIKDLS 103 (605)
T ss_dssp HTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCC-----CC--CGG-GGGCTTCCEEECCS---------SCCCCCT
T ss_pred CCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCC-----CC--Chh-hccCCCCCEEECcC---------CCCCCCh
Confidence 456777888888777765 577888888888888854 22 233 77888888888888 5566665
Q ss_pred ccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccccc
Q 037465 140 ENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSL 219 (432)
Q Consensus 140 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L 219 (432)
.+..+++|+.|+|++|.+..++ .+..+++|+.|+|++|. +..+ ..+..+++|+.|++++|......| +..+++|
T Consensus 104 -~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L 177 (605)
T 1m9s_A 104 -SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKL 177 (605)
T ss_dssp -TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred -hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCc-cCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCC
Confidence 6777888888888888887765 57788888888888887 5555 467788888888888885544333 7778888
Q ss_pred ccccceEecccccCCCCcCccccccCccCCceeeCCC
Q 037465 220 RTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGL 256 (432)
Q Consensus 220 ~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 256 (432)
+.|++.+|.... +..+..+++|+.|++.++
T Consensus 178 ~~L~Ls~N~i~~-------l~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 178 QNLYLSKNHISD-------LRALAGLKNLDVLELFSQ 207 (605)
T ss_dssp CEEECCSSCCCB-------CGGGTTCTTCSEEECCSE
T ss_pred CEEECcCCCCCC-------ChHHccCCCCCEEEccCC
Confidence 888887776542 245677777777777663
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.56 E-value=2.6e-14 Score=126.81 Aligned_cols=148 Identities=22% Similarity=0.282 Sum_probs=113.6
Q ss_pred EEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCc-ccc
Q 037465 65 HLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE-NVG 143 (432)
Q Consensus 65 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~-~~~ 143 (432)
.++..++.+..+|..+. ++|++|++++|.+ .+. .+..+..+++|++|++++ +.++.+|. .+.
T Consensus 23 ~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i-----~~~-~~~~~~~l~~L~~L~L~~---------N~l~~i~~~~~~ 85 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGIP--TNAQILYLHDNQI-----TKL-EPGVFDSLINLKELYLGS---------NQLGALPVGVFD 85 (229)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSSCC-----CCC-CTTTTTTCTTCCEEECCS---------SCCCCCCTTTTT
T ss_pred EeEccCCCcCccCCCCC--CCCCEEEcCCCcc-----Ccc-CHHHhhCccCCcEEECCC---------CCCCCcChhhcc
Confidence 36666777777777654 7889999998854 333 455688889999999988 66777764 457
Q ss_pred CCccccEEEeCCccccccchh-hhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccccc
Q 037465 144 KLIHLKYLNLSGLCIKRLPET-LCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTL 222 (432)
Q Consensus 144 ~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L 222 (432)
.+++|++|++++|.+..+|.. +..+++|++|++++|. +..+|..+..+++|+.|++++|......+..+..+++|+.|
T Consensus 86 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 164 (229)
T 3e6j_A 86 SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHA 164 (229)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence 888999999999988888754 5788899999999888 66888888888999999999885543333557788888888
Q ss_pred cceEeccc
Q 037465 223 GKFVVGGG 230 (432)
Q Consensus 223 ~l~~~~~~ 230 (432)
++.++...
T Consensus 165 ~l~~N~~~ 172 (229)
T 3e6j_A 165 YLFGNPWD 172 (229)
T ss_dssp ECTTSCBC
T ss_pred EeeCCCcc
Confidence 88777654
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.56 E-value=1.9e-14 Score=126.74 Aligned_cols=150 Identities=21% Similarity=0.190 Sum_probs=118.8
Q ss_pred EEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-Ccccc
Q 037465 65 HLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-PENVG 143 (432)
Q Consensus 65 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-p~~~~ 143 (432)
.+...++++..+|..+. ++|+.|++++|.+ .. +.+..|..+++|++|++++ +.+..+ |..+.
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i-----~~-i~~~~~~~l~~L~~L~Ls~---------N~i~~~~~~~~~ 77 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTI-----KV-IPPGAFSPYKKLRRIDLSN---------NQISELAPDAFQ 77 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSCC-----CE-ECTTSSTTCTTCCEEECCS---------SCCCEECTTTTT
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCcC-----CC-cCHhHhhCCCCCCEEECCC---------CcCCCcCHHHhh
Confidence 46777778888887664 6899999999954 22 2444588899999999999 667776 77888
Q ss_pred CCccccEEEeCCccccccchh-hhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccccc
Q 037465 144 KLIHLKYLNLSGLCIKRLPET-LCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTL 222 (432)
Q Consensus 144 ~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L 222 (432)
.+++|++|++++|.+..+|.. +..+++|++|++++|......|..+..+++|+.|++++|......+..+..+++|+.|
T Consensus 78 ~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 78 GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTM 157 (220)
T ss_dssp TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEE
Confidence 999999999999999988865 5789999999999998445556678889999999999996555445568888899999
Q ss_pred cceEecccc
Q 037465 223 GKFVVGGGV 231 (432)
Q Consensus 223 ~l~~~~~~~ 231 (432)
++.++....
T Consensus 158 ~L~~N~~~c 166 (220)
T 2v9t_B 158 HLAQNPFIC 166 (220)
T ss_dssp ECCSSCEEC
T ss_pred EeCCCCcCC
Confidence 988877653
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.54 E-value=2.7e-14 Score=124.68 Aligned_cols=143 Identities=24% Similarity=0.319 Sum_probs=63.4
Q ss_pred EeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCcc-ccCC
Q 037465 67 GLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPEN-VGKL 145 (432)
Q Consensus 67 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~-~~~l 145 (432)
...++++..+|..+ .++|++|++++|.+ .. +.+..+..+++|++|++++ +.++.+|.. +..+
T Consensus 13 ~c~~~~l~~~p~~~--~~~l~~L~l~~n~l-----~~-~~~~~~~~l~~L~~L~l~~---------n~l~~~~~~~~~~l 75 (208)
T 2o6s_A 13 ECYSQGRTSVPTGI--PAQTTYLDLETNSL-----KS-LPNGVFDELTSLTQLYLGG---------NKLQSLPNGVFNKL 75 (208)
T ss_dssp ECCSSCCSSCCSCC--CTTCSEEECCSSCC-----CC-CCTTTTTTCTTCSEEECCS---------SCCCCCCTTTTTTC
T ss_pred EecCCCccCCCCCC--CCCCcEEEcCCCcc-----Cc-CChhhhcccccCcEEECCC---------CccCccChhhcCCC
Confidence 33344444444333 23455555555532 11 1233344555555555555 334444322 3445
Q ss_pred ccccEEEeCCccccccchh-hhccCCccEEecccccccccCChh-hhcccccceEEcCCCCccccCCccCCccccccccc
Q 037465 146 IHLKYLNLSGLCIKRLPET-LCELYNLQKLDIRWCRNLRELPAG-IGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLG 223 (432)
Q Consensus 146 ~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~ 223 (432)
++|++|++++|.+..+|.. +..+++|++|++++|. +..+|.. +..+++|+.|++++|......+..+..+++|++|+
T Consensus 76 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 154 (208)
T 2o6s_A 76 TSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW 154 (208)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEE
Confidence 5555555555555544432 3455555555555554 3233322 34455555555555533222222244455555555
Q ss_pred ceEe
Q 037465 224 KFVV 227 (432)
Q Consensus 224 l~~~ 227 (432)
+.++
T Consensus 155 l~~N 158 (208)
T 2o6s_A 155 LHDN 158 (208)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 4444
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.53 E-value=1.1e-14 Score=146.99 Aligned_cols=189 Identities=20% Similarity=0.158 Sum_probs=124.4
Q ss_pred CcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhccc
Q 037465 114 ACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLM 193 (432)
Q Consensus 114 ~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~ 193 (432)
..+..+.++. ..+..++ .+..+++|+.|++++|.+..+| .+..+++|+.|+|++|. +..++. +..++
T Consensus 21 ~~l~~l~l~~---------~~i~~~~-~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~ 87 (605)
T 1m9s_A 21 AETIKDNLKK---------KSVTDAV-TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLK 87 (605)
T ss_dssp HHHHHHHTTC---------SCTTSEE-CHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCT
T ss_pred HHHHHHhccC---------CCccccc-chhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCC
Confidence 3344555655 4455543 3567888999999999988887 68889999999999998 666665 88899
Q ss_pred ccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccc
Q 037465 194 NMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQ 273 (432)
Q Consensus 194 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~ 273 (432)
+|+.|++++|.. ..+| .+..+++|+.|++.++.... +..+..+++|+.|+++++.- ... ..+..+
T Consensus 88 ~L~~L~Ls~N~l-~~l~-~l~~l~~L~~L~Ls~N~l~~-------l~~l~~l~~L~~L~Ls~N~l-~~l-----~~l~~l 152 (605)
T 1m9s_A 88 NLGWLFLDENKI-KDLS-SLKDLKKLKSLSLEHNGISD-------INGLVHLPQLESLYLGNNKI-TDI-----TVLSRL 152 (605)
T ss_dssp TCCEEECCSSCC-CCCT-TSTTCTTCCEEECTTSCCCC-------CGGGGGCTTCSEEECCSSCC-CCC-----GGGGSC
T ss_pred CCCEEECcCCCC-CCCh-hhccCCCCCEEEecCCCCCC-------CccccCCCccCEEECCCCcc-CCc-----hhhccc
Confidence 999999999854 4444 57788888888888776542 34566777777777776432 211 345566
Q ss_pred cCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCC
Q 037465 274 QNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFN 347 (432)
Q Consensus 274 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 347 (432)
++|+.|+|++|.+.+ ... +..+++|+.|+|++|....++ .+..+++|+.|+|++|..
T Consensus 153 ~~L~~L~Ls~N~l~~---------------~~~-l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 153 TKLDTLSLEDNQISD---------------IVP-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp TTCSEEECCSSCCCC---------------CGG-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEE
T ss_pred CCCCEEECcCCcCCC---------------chh-hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcC
Confidence 667777776666211 111 445556666666665555532 345556666666666543
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.52 E-value=2e-14 Score=143.62 Aligned_cols=39 Identities=10% Similarity=-0.095 Sum_probs=29.3
Q ss_pred CcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCC
Q 037465 314 VEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLP 352 (432)
Q Consensus 314 L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~ 352 (432)
|+.|++++|....+|.++..+++|+.|++++|...+.+|
T Consensus 209 L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 209 EIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp CEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred ceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 377888877777778877788888888888886555433
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.51 E-value=1.4e-13 Score=124.68 Aligned_cols=147 Identities=18% Similarity=0.177 Sum_probs=112.2
Q ss_pred CCceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC
Q 037465 60 GGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP 139 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp 139 (432)
..+++.|.+.++.+..++ .+..+++|++|++++|.++ + ++. +..+++|++|++++ +.++.+|
T Consensus 40 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~-----~--~~~-l~~l~~L~~L~L~~---------N~l~~l~ 101 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQIS-----D--LSP-LKDLTKLEELSVNR---------NRLKNLN 101 (263)
T ss_dssp HTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCC-----C--CGG-GTTCSSCCEEECCS---------SCCSCCT
T ss_pred cCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccC-----C--Chh-hccCCCCCEEECCC---------CccCCcC
Confidence 567888888888888776 6778888888888888542 2 333 77888888888888 5677776
Q ss_pred ccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccccc
Q 037465 140 ENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSL 219 (432)
Q Consensus 140 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L 219 (432)
.... ++|++|++++|.+..++ .+..+++|++|++++|. +..++ .+..+++|+.|++++|..... ..+..+++|
T Consensus 102 ~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L 174 (263)
T 1xeu_A 102 GIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKV 174 (263)
T ss_dssp TCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCC
T ss_pred cccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCcCcch--HHhccCCCC
Confidence 4333 88888888888888876 57888888888888887 66665 677888888888888855443 557788888
Q ss_pred ccccceEecccc
Q 037465 220 RTLGKFVVGGGV 231 (432)
Q Consensus 220 ~~L~l~~~~~~~ 231 (432)
+.|++.++....
T Consensus 175 ~~L~l~~N~~~~ 186 (263)
T 1xeu_A 175 NWIDLTGQKCVN 186 (263)
T ss_dssp CEEEEEEEEEEC
T ss_pred CEEeCCCCcccC
Confidence 888888887653
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.51 E-value=7.6e-14 Score=121.80 Aligned_cols=159 Identities=22% Similarity=0.322 Sum_probs=127.3
Q ss_pred CCceEEEEeecCCCCCCCc-cccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465 60 GGKVRHLGLNFEGGAPLPM-SFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI 138 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l 138 (432)
.++++.|++.++.+..++. .+.++++|++|++++|++ .. +.+..+..+++|++|++++ +.++.+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-----~~-~~~~~~~~l~~L~~L~Ls~---------n~l~~~ 91 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL-----QS-LPNGVFNKLTSLTYLNLST---------NQLQSL 91 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC-----CC-CCTTTTTTCTTCCEEECCS---------SCCCCC
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCcc-----Cc-cChhhcCCCCCcCEEECCC---------CcCCcc
Confidence 5689999999999988766 468999999999999954 32 2555578999999999999 677777
Q ss_pred Ccc-ccCCccccEEEeCCccccccchh-hhccCCccEEecccccccccCChh-hhcccccceEEcCCCCccccCCccCCc
Q 037465 139 PEN-VGKLIHLKYLNLSGLCIKRLPET-LCELYNLQKLDIRWCRNLRELPAG-IGKLMNMRSLLNDNTRSLKYMPIGISK 215 (432)
Q Consensus 139 p~~-~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~l~~ 215 (432)
|.. +..+++|++|++++|.+..+|+. +..+++|++|++++|. +..+|.. +..+++|+.|++++|+.. +.
T Consensus 92 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~ 163 (208)
T 2o6s_A 92 PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD-------CT 163 (208)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC-------CC
T ss_pred CHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee-------cC
Confidence 654 68999999999999999988864 6889999999999998 5555554 788999999999999543 45
Q ss_pred ccccccccceEecccccCCCCcCccccccCc
Q 037465 216 LTSLRTLGKFVVGGGVDGSSTCRLESLKNLQ 246 (432)
Q Consensus 216 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~ 246 (432)
+++|+.|++..+... +..+..++.++
T Consensus 164 ~~~l~~L~~~~n~~~-----g~ip~~~~~l~ 189 (208)
T 2o6s_A 164 CPGIRYLSEWINKHS-----GVVRNSAGSVA 189 (208)
T ss_dssp TTTTHHHHHHHHHCT-----TTBBCTTSSBC
T ss_pred CCCHHHHHHHHHhCC-----ceeeccCcccc
Confidence 678888888877655 33444455443
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.51 E-value=2.5e-14 Score=129.67 Aligned_cols=138 Identities=20% Similarity=0.175 Sum_probs=77.2
Q ss_pred EEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCC
Q 037465 66 LGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKL 145 (432)
Q Consensus 66 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l 145 (432)
+.+..+.+.+++ .+.++++|++|++++|.++. ++ .+..+++|++|++++ +.++.++. +..+
T Consensus 24 l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~-------l~-~l~~l~~L~~L~L~~---------N~i~~~~~-l~~l 84 (263)
T 1xeu_A 24 QNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQS-------LA-GMQFFTNLKELHLSH---------NQISDLSP-LKDL 84 (263)
T ss_dssp HHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCC-------CT-TGGGCTTCCEEECCS---------SCCCCCGG-GTTC
T ss_pred HHhcCCCccccc-chhhcCcCcEEECcCCCccc-------ch-HHhhCCCCCEEECCC---------CccCCChh-hccC
Confidence 344445555444 45566666666666664322 22 256666666666666 45555554 6666
Q ss_pred ccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccccccce
Q 037465 146 IHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKF 225 (432)
Q Consensus 146 ~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~ 225 (432)
++|++|++++|.+..+|... . ++|++|++++|. +..++ .+..+++|+.|++++|.. ..++ .++.+++|+.|++.
T Consensus 85 ~~L~~L~L~~N~l~~l~~~~-~-~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N~i-~~~~-~l~~l~~L~~L~L~ 158 (263)
T 1xeu_A 85 TKLEELSVNRNRLKNLNGIP-S-ACLSRLFLDNNE-LRDTD-SLIHLKNLEILSIRNNKL-KSIV-MLGFLSKLEVLDLH 158 (263)
T ss_dssp SSCCEEECCSSCCSCCTTCC-C-SSCCEEECCSSC-CSBSG-GGTTCTTCCEEECTTSCC-CBCG-GGGGCTTCCEEECT
T ss_pred CCCCEEECCCCccCCcCccc-c-CcccEEEccCCc-cCCCh-hhcCcccccEEECCCCcC-CCCh-HHccCCCCCEEECC
Confidence 66666666666666665322 2 666666666665 44443 456666666666666632 2232 34455555555554
Q ss_pred Eec
Q 037465 226 VVG 228 (432)
Q Consensus 226 ~~~ 228 (432)
++.
T Consensus 159 ~N~ 161 (263)
T 1xeu_A 159 GNE 161 (263)
T ss_dssp TSC
T ss_pred CCc
Confidence 443
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.49 E-value=1.4e-13 Score=137.54 Aligned_cols=135 Identities=24% Similarity=0.253 Sum_probs=105.2
Q ss_pred CceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCc
Q 037465 61 GKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE 140 (432)
Q Consensus 61 ~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~ 140 (432)
.+++.|++.++.+..+|..+. ++|++|++++|.++ . +| ..+++|++|++++ +.++.+|.
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~------~-ip---~~l~~L~~L~Ls~---------N~l~~ip~ 117 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALI------S-LP---ELPASLEYLDACD---------NRLSTLPE 117 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCS------C-CC---CCCTTCCEEECCS---------SCCSCCCC
T ss_pred CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCc------c-cc---cccCCCCEEEccC---------CCCCCcch
Confidence 368889999888888887663 78999999998543 2 33 3478899999998 66777877
Q ss_pred cccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccc
Q 037465 141 NVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLR 220 (432)
Q Consensus 141 ~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 220 (432)
+.. +|++|++++|.++.+|. .+++|++|++++|. +..+|. .+++|+.|++++|.. ..+|. +. ++|+
T Consensus 118 -l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~L-~~lp~-l~--~~L~ 183 (571)
T 3cvr_A 118 -LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQL-TFLPE-LP--ESLE 183 (571)
T ss_dssp -CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCC-SCCCC-CC--TTCC
T ss_pred -hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCCC-CCcch-hh--CCCC
Confidence 654 89999999999888886 67889999999888 666776 577899999998854 44777 55 7888
Q ss_pred cccceEeccc
Q 037465 221 TLGKFVVGGG 230 (432)
Q Consensus 221 ~L~l~~~~~~ 230 (432)
.|++.+|...
T Consensus 184 ~L~Ls~N~L~ 193 (571)
T 3cvr_A 184 ALDVSTNLLE 193 (571)
T ss_dssp EEECCSSCCS
T ss_pred EEECcCCCCC
Confidence 8888877655
No 112
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.48 E-value=7.5e-14 Score=117.47 Aligned_cols=130 Identities=22% Similarity=0.205 Sum_probs=69.5
Q ss_pred CcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccccc-cc
Q 037465 84 DRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKR-LP 162 (432)
Q Consensus 84 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~-lp 162 (432)
++|++|++++|.++. +. ++..+..+++|++|++++ +.++.+ ..+..+++|++|++++|.+.. +|
T Consensus 24 ~~L~~L~l~~n~l~~----~~-i~~~~~~l~~L~~L~l~~---------n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~ 88 (168)
T 2ell_A 24 AAVRELVLDNCKSND----GK-IEGLTAEFVNLEFLSLIN---------VGLISV-SNLPKLPKLKKLELSENRIFGGLD 88 (168)
T ss_dssp TSCSEEECCSCBCBT----TB-CSSCCGGGGGCCEEEEES---------SCCCCC-SSCCCCSSCCEEEEESCCCCSCCC
T ss_pred ccCCEEECCCCCCCh----hh-HHHHHHhCCCCCEEeCcC---------CCCCCh-hhhccCCCCCEEECcCCcCchHHH
Confidence 455666666663211 12 333355556666666666 334444 455556666666666666554 44
Q ss_pred hhhhccCCccEEecccccccccCC--hhhhcccccceEEcCCCCccccCCc----cCCcccccccccceEeccc
Q 037465 163 ETLCELYNLQKLDIRWCRNLRELP--AGIGKLMNMRSLLNDNTRSLKYMPI----GISKLTSLRTLGKFVVGGG 230 (432)
Q Consensus 163 ~~i~~l~~L~~L~l~~~~~~~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~----~l~~l~~L~~L~l~~~~~~ 230 (432)
..+..+++|++|++++|. +..+| ..+..+++|+.|++++|... ..|. .+..+++|++|++..+...
T Consensus 89 ~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 89 MLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp HHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred HHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChh
Confidence 444556666666666665 44443 44555666666666666332 2332 4555666666666655443
No 113
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.48 E-value=1.2e-13 Score=116.25 Aligned_cols=133 Identities=27% Similarity=0.242 Sum_probs=107.1
Q ss_pred CCceEEEEeecCCCC--CCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccc
Q 037465 60 GGKVRHLGLNFEGGA--PLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITE 137 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~ 137 (432)
.++++.|.+.++.+. .+|..+..+++|++|++++|.++. + ..+..+++|++|++++ +.+..
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-------~-~~~~~l~~L~~L~Ls~---------N~l~~ 85 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-------V-SNLPKLPKLKKLELSE---------NRIFG 85 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-------C-SSCCCCSSCCEEEEES---------CCCCS
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-------h-hhhccCCCCCEEECcC---------CcCch
Confidence 577899999999887 688888899999999999996533 2 3478899999999999 55666
Q ss_pred -cCccccCCccccEEEeCCccccccc--hhhhccCCccEEecccccccccCCh----hhhcccccceEEcCCCCccccCC
Q 037465 138 -IPENVGKLIHLKYLNLSGLCIKRLP--ETLCELYNLQKLDIRWCRNLRELPA----GIGKLMNMRSLLNDNTRSLKYMP 210 (432)
Q Consensus 138 -lp~~~~~l~~L~~L~L~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~lp~----~i~~l~~L~~L~l~~~~~~~~~p 210 (432)
+|..+..+++|++|++++|.+..+| ..+..+++|++|++++|. +..+|. .+..+++|+.|++++|. ...+|
T Consensus 86 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~ 163 (168)
T 2ell_A 86 GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAP 163 (168)
T ss_dssp CCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT-SCBCC
T ss_pred HHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC-hhhcc
Confidence 6766777999999999999988876 678889999999999998 666665 67889999999999884 34444
Q ss_pred c
Q 037465 211 I 211 (432)
Q Consensus 211 ~ 211 (432)
.
T Consensus 164 ~ 164 (168)
T 2ell_A 164 D 164 (168)
T ss_dssp S
T ss_pred c
Confidence 3
No 114
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.47 E-value=8.5e-14 Score=114.62 Aligned_cols=125 Identities=24% Similarity=0.241 Sum_probs=70.2
Q ss_pred CcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccccc-cc
Q 037465 84 DRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKR-LP 162 (432)
Q Consensus 84 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~-lp 162 (432)
++|+.|++++|.++. +. ++..+..+++|++|++++ +.++.+ ..+..+++|++|++++|.+.. +|
T Consensus 17 ~~l~~L~l~~n~l~~----~~-~~~~~~~l~~L~~L~l~~---------n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~ 81 (149)
T 2je0_A 17 SDVKELVLDNSRSNE----GK-LEGLTDEFEELEFLSTIN---------VGLTSI-ANLPKLNKLKKLELSDNRVSGGLE 81 (149)
T ss_dssp GGCSEEECTTCBCBT----TB-CCSCCTTCTTCCEEECTT---------SCCCCC-TTCCCCTTCCEEECCSSCCCSCTH
T ss_pred ccCeEEEccCCcCCh----hH-HHHHHhhcCCCcEEECcC---------CCCCCc-hhhhcCCCCCEEECCCCcccchHH
Confidence 456666666663321 12 333456666666666666 344444 455666666666666666655 55
Q ss_pred hhhhccCCccEEecccccccccCC--hhhhcccccceEEcCCCCccccCCc----cCCcccccccccce
Q 037465 163 ETLCELYNLQKLDIRWCRNLRELP--AGIGKLMNMRSLLNDNTRSLKYMPI----GISKLTSLRTLGKF 225 (432)
Q Consensus 163 ~~i~~l~~L~~L~l~~~~~~~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~----~l~~l~~L~~L~l~ 225 (432)
..+..+++|++|++++|. +..+| ..++.+++|++|++++|... ..|. .++.+++|+.|++.
T Consensus 82 ~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 82 VLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVT-NLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGG-GSTTHHHHHHHHCTTCCEETTB
T ss_pred HHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCccc-chHHHHHHHHHHCCCcccccCC
Confidence 555556666666666665 43332 45566666666666666333 2332 45556666666553
No 115
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=1.9e-13 Score=115.99 Aligned_cols=133 Identities=23% Similarity=0.137 Sum_probs=94.1
Q ss_pred cccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccc
Q 037465 79 SFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCI 158 (432)
Q Consensus 79 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l 158 (432)
.+.++++|++|++++|.++. ++......++|++|++++ +.++.+ ..+..+++|++|++++|.+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-------i~~~~~~~~~L~~L~Ls~---------N~l~~~-~~l~~l~~L~~L~Ls~N~l 76 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-------IENLGATLDQFDAIDFSD---------NEIRKL-DGFPLLRRLKTLLVNNNRI 76 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-------CCCGGGGTTCCSEEECCS---------SCCCEE-CCCCCCSSCCEEECCSSCC
T ss_pred hcCCcCCceEEEeeCCCCch-------hHHhhhcCCCCCEEECCC---------CCCCcc-cccccCCCCCEEECCCCcc
Confidence 45667788888888885432 233233344888888888 556666 5677788888888888888
Q ss_pred cccchhh-hccCCccEEecccccccccCCh--hhhcccccceEEcCCCCccccCCcc----CCcccccccccceEeccc
Q 037465 159 KRLPETL-CELYNLQKLDIRWCRNLRELPA--GIGKLMNMRSLLNDNTRSLKYMPIG----ISKLTSLRTLGKFVVGGG 230 (432)
Q Consensus 159 ~~lp~~i-~~l~~L~~L~l~~~~~~~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~~----l~~l~~L~~L~l~~~~~~ 230 (432)
..+|+.+ ..+++|++|++++|. +..+|. .+..+++|+.|++++|+. ..+|.. ++.+++|+.|++..+...
T Consensus 77 ~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 77 CRIGEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred cccCcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 8777554 778888888888887 566665 677788888888888854 345553 677788888887776544
No 116
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.46 E-value=1.2e-13 Score=142.94 Aligned_cols=158 Identities=21% Similarity=0.215 Sum_probs=86.1
Q ss_pred CCceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC
Q 037465 60 GGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP 139 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp 139 (432)
..+++++++..+.+...+..+.....|+.+.+....+....+. .++..+..++.|++|+|++ +.+..+|
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~---------n~l~~l~ 240 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSN---------LQIFNIS 240 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTT---------SCCSCCC
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCC---------CCCCCCC
Confidence 4567788887777766555544444444444333221111111 2455677788888888888 5677777
Q ss_pred ccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccccc
Q 037465 140 ENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSL 219 (432)
Q Consensus 140 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L 219 (432)
..+..+++|++|+|++|.+..+|..++.+++|++|+|++|. +..+|..++.+++|++|++++| .+..+|..++.+++|
T Consensus 241 ~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L 318 (727)
T 4b8c_D 241 ANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNL 318 (727)
T ss_dssp GGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTC
T ss_pred hhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCC-CCCccChhhhcCCCc
Confidence 77778888888888888888888888888888888888887 5577888888888888888888 445777778888888
Q ss_pred ccccceEeccc
Q 037465 220 RTLGKFVVGGG 230 (432)
Q Consensus 220 ~~L~l~~~~~~ 230 (432)
+.|++.+|...
T Consensus 319 ~~L~L~~N~l~ 329 (727)
T 4b8c_D 319 QFLGVEGNPLE 329 (727)
T ss_dssp CCEECTTSCCC
T ss_pred cEEeCCCCccC
Confidence 88888777654
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.44 E-value=2.9e-13 Score=128.54 Aligned_cols=148 Identities=20% Similarity=0.195 Sum_probs=98.3
Q ss_pred EEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhc-cCCcceEEEeCCCCCCCCCCCCcccccC-ccc
Q 037465 65 HLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFS-KLACLRALVISQSSSFSHPGPNLITEIP-ENV 142 (432)
Q Consensus 65 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~~lp-~~~ 142 (432)
.++..++.+..+|..+. +.++.|++++|.+ +.- .+..+. .+++|++|++++ +.+..++ ..+
T Consensus 22 ~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l-----~~l-~~~~~~~~l~~L~~L~L~~---------N~i~~i~~~~~ 84 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLP--SYTALLDLSHNNL-----SRL-RAEWTPTRLTNLHSLLLSH---------NHLNFISSEAF 84 (361)
T ss_dssp EEECCSSCCSSCCSSCC--TTCSEEECCSSCC-----CEE-CTTSSSSCCTTCCEEECCS---------SCCCEECTTTT
T ss_pred EEEeCCCCcCccCccCC--CCCCEEECCCCCC-----Ccc-ChhhhhhcccccCEEECCC---------CcCCccChhhc
Confidence 46677777777776553 3577788888754 222 333355 778888888887 5666664 457
Q ss_pred cCCccccEEEeCCccccccch-hhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccC----Cccc
Q 037465 143 GKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGI----SKLT 217 (432)
Q Consensus 143 ~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l----~~l~ 217 (432)
..+++|++|+|++|.+..++. .+..+++|++|++++|......|..+..+++|+.|++++|. +..+|..+ ..++
T Consensus 85 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~ 163 (361)
T 2xot_A 85 VPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLP 163 (361)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CT
T ss_pred cCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCC
Confidence 778888888888888777764 46777888888888877444445667777888888888774 34455432 4567
Q ss_pred ccccccceEeccc
Q 037465 218 SLRTLGKFVVGGG 230 (432)
Q Consensus 218 ~L~~L~l~~~~~~ 230 (432)
+|+.|++.++...
T Consensus 164 ~L~~L~L~~N~l~ 176 (361)
T 2xot_A 164 KLMLLDLSSNKLK 176 (361)
T ss_dssp TCCEEECCSSCCC
T ss_pred cCCEEECCCCCCC
Confidence 7777777766544
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.44 E-value=7.1e-13 Score=117.47 Aligned_cols=132 Identities=22% Similarity=0.279 Sum_probs=113.7
Q ss_pred CCceEEEEeecCCCCCC-CccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465 60 GGKVRHLGLNFEGGAPL-PMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI 138 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l 138 (432)
..+++.|.++++.+..+ +..|.++++|++|++++|.+ ..+.+..|..+++|++|++++ +.++.+
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l------~~i~~~~~~~l~~L~~L~Ls~---------N~l~~l 103 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL------GALPVGVFDSLTQLTVLDLGT---------NQLTVL 103 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC------CCCCTTTTTTCTTCCEEECCS---------SCCCCC
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC------CCcChhhcccCCCcCEEECCC---------CcCCcc
Confidence 57899999999999986 66789999999999999954 233455689999999999999 678888
Q ss_pred Ccc-ccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCC-hhhhcccccceEEcCCCCccc
Q 037465 139 PEN-VGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELP-AGIGKLMNMRSLLNDNTRSLK 207 (432)
Q Consensus 139 p~~-~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~ 207 (432)
|.. +..+++|++|++++|.+..+|..+..+++|++|++++|. +..+| ..+..+++|+.|++++|+...
T Consensus 104 ~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 104 PSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred ChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 654 688999999999999999999999999999999999998 66666 457889999999999996544
No 119
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.43 E-value=1.5e-13 Score=113.14 Aligned_cols=125 Identities=29% Similarity=0.294 Sum_probs=107.1
Q ss_pred CCceEEEEeecCCCC--CCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccc
Q 037465 60 GGKVRHLGLNFEGGA--PLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITE 137 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~ 137 (432)
.++++.+.+.++.+. .+|..+..+++|++|++++|.++. . ..+..+++|++|++++ +.+..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-------~-~~~~~l~~L~~L~Ls~---------n~i~~ 78 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-------I-ANLPKLNKLKKLELSD---------NRVSG 78 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC-------C-TTCCCCTTCCEEECCS---------SCCCS
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC-------c-hhhhcCCCCCEEECCC---------Ccccc
Confidence 567999999999988 588888999999999999996543 2 4488999999999999 56666
Q ss_pred -cCccccCCccccEEEeCCccccccc--hhhhccCCccEEecccccccccCCh----hhhcccccceEEcCC
Q 037465 138 -IPENVGKLIHLKYLNLSGLCIKRLP--ETLCELYNLQKLDIRWCRNLRELPA----GIGKLMNMRSLLNDN 202 (432)
Q Consensus 138 -lp~~~~~l~~L~~L~L~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~lp~----~i~~l~~L~~L~l~~ 202 (432)
+|..+..+++|++|++++|.+..+| ..+..+++|++|++++|. +..+|. .+..+++|+.|++++
T Consensus 79 ~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 79 GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred hHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence 7777778999999999999999875 789999999999999998 666664 688899999998863
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.42 E-value=4.9e-14 Score=145.73 Aligned_cols=139 Identities=18% Similarity=0.128 Sum_probs=108.3
Q ss_pred CCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEe
Q 037465 74 APLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNL 153 (432)
Q Consensus 74 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L 153 (432)
...+..+..++.|++|++++|.+ . . ++..+..+++|++|+|++ +.+..+|..++++++|++|+|
T Consensus 214 ~~~~~~~~~l~~L~~L~Ls~n~l-----~-~-l~~~~~~l~~L~~L~Ls~---------N~l~~lp~~~~~l~~L~~L~L 277 (727)
T 4b8c_D 214 VMPKDSKYDDQLWHALDLSNLQI-----F-N-ISANIFKYDFLTRLYLNG---------NSLTELPAEIKNLSNLRVLDL 277 (727)
T ss_dssp --------CCCCCCEEECTTSCC-----S-C-CCGGGGGCCSCSCCBCTT---------SCCSCCCGGGGGGTTCCEEEC
T ss_pred ecChhhhccCCCCcEEECCCCCC-----C-C-CChhhcCCCCCCEEEeeC---------CcCcccChhhhCCCCCCEEeC
Confidence 33466788999999999999964 2 3 444466899999999999 678899999999999999999
Q ss_pred CCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccc-cccccceEecc
Q 037465 154 SGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTS-LRTLGKFVVGG 229 (432)
Q Consensus 154 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~-L~~L~l~~~~~ 229 (432)
++|.+..+|..++.+++|++|+|++|. +..+|..++.+++|+.|++++|...+..|..+..+.. +..+++.++..
T Consensus 278 s~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l 353 (727)
T 4b8c_D 278 SHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRP 353 (727)
T ss_dssp TTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred cCCcCCccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcc
Confidence 999999999999999999999999998 7799999999999999999999877776665544322 22344555443
No 121
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.41 E-value=8.4e-13 Score=116.20 Aligned_cols=125 Identities=20% Similarity=0.254 Sum_probs=88.0
Q ss_pred cEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCc-cccCCccccEEEeCCcccccc-chh
Q 037465 87 RSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE-NVGKLIHLKYLNLSGLCIKRL-PET 164 (432)
Q Consensus 87 ~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~l-p~~ 164 (432)
+.++.+++.++ . +|..+. ++|+.|++++ +.++.++. .+..+++|++|++++|.+..+ |..
T Consensus 14 ~~v~c~~~~l~-----~--iP~~l~--~~l~~L~l~~---------n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~ 75 (220)
T 2v9t_B 14 NIVDCRGKGLT-----E--IPTNLP--ETITEIRLEQ---------NTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA 75 (220)
T ss_dssp TEEECTTSCCS-----S--CCSSCC--TTCCEEECCS---------SCCCEECTTSSTTCTTCCEEECCSSCCCEECTTT
T ss_pred CEEEcCCCCcC-----c--CCCccC--cCCCEEECCC---------CcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHH
Confidence 56777776432 1 232222 5788888888 66777754 677788888888888887766 567
Q ss_pred hhccCCccEEecccccccccCChh-hhcccccceEEcCCCCccccCCccCCcccccccccceEeccc
Q 037465 165 LCELYNLQKLDIRWCRNLRELPAG-IGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGG 230 (432)
Q Consensus 165 i~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~ 230 (432)
+..+++|++|++++|. +..+|.. +..+++|+.|++++|......|..+..+++|++|++.++...
T Consensus 76 ~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 141 (220)
T 2v9t_B 76 FQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ 141 (220)
T ss_dssp TTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred hhCCcCCCEEECCCCc-CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC
Confidence 7888888888888887 5566655 467888888888888655555666777777888777766554
No 122
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.41 E-value=8.5e-13 Score=116.18 Aligned_cols=134 Identities=15% Similarity=0.104 Sum_probs=112.4
Q ss_pred CCceEEEEeecCCCCCCC--ccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccc
Q 037465 60 GGKVRHLGLNFEGGAPLP--MSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITE 137 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~ 137 (432)
...++.|.++++.+..++ ..|.++++|++|++++|.+ +.. .+..|..+++|++|++++ +.++.
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i-----~~i-~~~~~~~l~~L~~L~Ls~---------N~l~~ 95 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI-----TDI-EEGAFEGASGVNEILLTS---------NRLEN 95 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCC-----CEE-CTTTTTTCTTCCEEECCS---------SCCCC
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcC-----CEE-CHHHhCCCCCCCEEECCC---------CccCc
Confidence 456789999999998863 3488999999999999954 332 455689999999999999 67777
Q ss_pred cCc-cccCCccccEEEeCCcccccc-chhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCcccc
Q 037465 138 IPE-NVGKLIHLKYLNLSGLCIKRL-PETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKY 208 (432)
Q Consensus 138 lp~-~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~ 208 (432)
++. .+..+++|++|++++|.+..+ |..+..+++|++|++++|......|..+..+++|+.|++++|+....
T Consensus 96 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 96 VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred cCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 754 588999999999999999977 56789999999999999985455578899999999999999976543
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.40 E-value=7.8e-13 Score=112.13 Aligned_cols=127 Identities=21% Similarity=0.162 Sum_probs=108.7
Q ss_pred CCceEEEEeecCCCCCCCccccccC-cccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465 60 GGKVRHLGLNFEGGAPLPMSFFEFD-RLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI 138 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l 138 (432)
..+++.|.+.++.+..++. +..+. +|++|++++|.++. + ..+..+++|++|++++ +.++.+
T Consensus 18 ~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~-------~-~~l~~l~~L~~L~Ls~---------N~l~~~ 79 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRK-------L-DGFPLLRRLKTLLVNN---------NRICRI 79 (176)
T ss_dssp TTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCE-------E-CCCCCCSSCCEEECCS---------SCCCEE
T ss_pred cCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCc-------c-cccccCCCCCEEECCC---------Cccccc
Confidence 6789999999999998755 45554 99999999996543 2 3488999999999999 778888
Q ss_pred Cccc-cCCccccEEEeCCccccccch--hhhccCCccEEecccccccccCChh----hhcccccceEEcCCCCc
Q 037465 139 PENV-GKLIHLKYLNLSGLCIKRLPE--TLCELYNLQKLDIRWCRNLRELPAG----IGKLMNMRSLLNDNTRS 205 (432)
Q Consensus 139 p~~~-~~l~~L~~L~L~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~lp~~----i~~l~~L~~L~l~~~~~ 205 (432)
|..+ ..+++|++|++++|.+..+|. .+..+++|++|++++|. +..+|.. +..+++|+.|++++|..
T Consensus 80 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 80 GEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 7655 889999999999999999987 78999999999999998 6677775 88999999999998854
No 124
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.39 E-value=4.6e-13 Score=127.21 Aligned_cols=154 Identities=23% Similarity=0.199 Sum_probs=124.3
Q ss_pred CCceEEEEeecCCCCCCCcc-cc-ccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccc
Q 037465 60 GGKVRHLGLNFEGGAPLPMS-FF-EFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITE 137 (432)
Q Consensus 60 ~~~i~~L~l~~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~ 137 (432)
...++.|+++++.+..++.. +. ++++|++|++++|.+ .. +.+..|..+++|++|+|++ +.++.
T Consensus 38 ~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i-----~~-i~~~~~~~l~~L~~L~Ls~---------N~l~~ 102 (361)
T 2xot_A 38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL-----NF-ISSEAFVPVPNLRYLDLSS---------NHLHT 102 (361)
T ss_dssp CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCC-----CE-ECTTTTTTCTTCCEEECCS---------SCCCE
T ss_pred CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcC-----Cc-cChhhccCCCCCCEEECCC---------CcCCc
Confidence 56788999999999986654 55 899999999999965 32 2445689999999999999 67888
Q ss_pred cCc-cccCCccccEEEeCCcccccc-chhhhccCCccEEecccccccccCChhh----hcccccceEEcCCCCccccCC-
Q 037465 138 IPE-NVGKLIHLKYLNLSGLCIKRL-PETLCELYNLQKLDIRWCRNLRELPAGI----GKLMNMRSLLNDNTRSLKYMP- 210 (432)
Q Consensus 138 lp~-~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~i----~~l~~L~~L~l~~~~~~~~~p- 210 (432)
++. .+..+++|++|+|++|.+..+ |..+..+++|++|++++|. +..+|..+ ..+++|+.|++++|... .+|
T Consensus 103 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~ 180 (361)
T 2xot_A 103 LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPL 180 (361)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCC-CCCH
T ss_pred CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCC-ccCH
Confidence 754 588999999999999999877 4678999999999999998 77788765 57999999999999554 455
Q ss_pred ccCCcccc--cccccceEeccc
Q 037465 211 IGISKLTS--LRTLGKFVVGGG 230 (432)
Q Consensus 211 ~~l~~l~~--L~~L~l~~~~~~ 230 (432)
..+..+++ ++.|++.+|...
T Consensus 181 ~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 181 TDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp HHHHHSCHHHHTTEECCSSCEE
T ss_pred HHhhhccHhhcceEEecCCCcc
Confidence 45666666 478888887655
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.39 E-value=1.4e-12 Score=112.15 Aligned_cols=130 Identities=21% Similarity=0.205 Sum_probs=103.3
Q ss_pred EEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-Cccc
Q 037465 64 RHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-PENV 142 (432)
Q Consensus 64 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-p~~~ 142 (432)
+.++++++.+..+|..+.. +|++|++++|.+ ........+..+++|++|++++ +.++.+ |..+
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i-----~~~~~~~~~~~l~~L~~L~Ls~---------N~l~~~~~~~~ 74 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNEL-----GRISSDGLFGRLPHLVKLELKR---------NQLTGIEPNAF 74 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCC-----CSBCCSCSGGGCTTCCEEECCS---------SCCCCBCTTTT
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcC-----CccCCccccccCCCCCEEECCC---------CCCCCcCHhHc
Confidence 4678888888888876644 899999999954 2321122478899999999999 667776 7788
Q ss_pred cCCccccEEEeCCccccccch-hhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccC
Q 037465 143 GKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYM 209 (432)
Q Consensus 143 ~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~ 209 (432)
..+++|++|++++|.+..+++ .+..+++|++|++++|......|..+..+++|++|++++|+.....
T Consensus 75 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 75 EGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp TTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 899999999999999887765 4788999999999999855666778888999999999998665443
No 126
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.33 E-value=3.7e-14 Score=122.83 Aligned_cols=127 Identities=17% Similarity=0.155 Sum_probs=84.1
Q ss_pred eEEEEeecC--CCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCc
Q 037465 63 VRHLGLNFE--GGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE 140 (432)
Q Consensus 63 i~~L~l~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~ 140 (432)
++...+.+. .++.+|..+.++++|++|++++|.++ . ++ .+..+++|++|++++ +.++.+|.
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-----~--l~-~~~~l~~L~~L~l~~---------n~l~~l~~ 87 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-----K--IS-SLSGMENLRILSLGR---------NLIKKIEN 87 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-----C--CC-CHHHHTTCCEEEEEE---------EEECSCSS
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-----c--cc-ccccCCCCCEEECCC---------CCcccccc
Confidence 334444433 44555557777777777777777442 2 33 467777777777777 56667776
Q ss_pred cccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCCh--hhhcccccceEEcCCCCcccc
Q 037465 141 NVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPA--GIGKLMNMRSLLNDNTRSLKY 208 (432)
Q Consensus 141 ~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~--~i~~l~~L~~L~l~~~~~~~~ 208 (432)
.+..+++|++|++++|.+..+| .+..+++|++|++++|. +..++. .+..+++|++|++++|+....
T Consensus 88 ~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 88 LDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred hhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 6666777777777777777766 57777777777777776 444443 566777777777777754433
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.32 E-value=1.3e-11 Score=106.24 Aligned_cols=123 Identities=18% Similarity=0.227 Sum_probs=94.5
Q ss_pred EEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC-cccc
Q 037465 65 HLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP-ENVG 143 (432)
Q Consensus 65 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp-~~~~ 143 (432)
.+++.++.+..+|..+. ++|++|++++|.++ . ++..+..+++|++|++++ +.++.++ ..|.
T Consensus 14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~------~-ip~~~~~l~~L~~L~Ls~---------N~i~~i~~~~f~ 75 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT------L-VPKELSNYKHLTLIDLSN---------NRISTLSNQSFS 75 (193)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECCSSCCC------S-CCGGGGGCTTCCEEECCS---------SCCCCCCTTTTT
T ss_pred EEEcCCCCCCcCCCCCC--CCCCEEECCCCcCc------h-hHHHhhcccCCCEEECCC---------CcCCEeCHhHcc
Confidence 46777778887777653 57889999888542 2 445688888999999988 6677774 4678
Q ss_pred CCccccEEEeCCccccccch-hhhccCCccEEecccccccccCCh-hhhcccccceEEcCCCCcc
Q 037465 144 KLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLRELPA-GIGKLMNMRSLLNDNTRSL 206 (432)
Q Consensus 144 ~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~ 206 (432)
.+++|++|++++|.+..+++ .+..+++|++|++++|. +..+|. .+..+++|+.|++++|+..
T Consensus 76 ~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 76 NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCee
Confidence 88899999999988887765 57888889999998888 556655 4677888888888888543
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.32 E-value=3.4e-12 Score=109.73 Aligned_cols=126 Identities=17% Similarity=0.163 Sum_probs=97.1
Q ss_pred cEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCcc--ccCCccccEEEeCCcccccc-ch
Q 037465 87 RSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPEN--VGKLIHLKYLNLSGLCIKRL-PE 163 (432)
Q Consensus 87 ~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~--~~~l~~L~~L~L~~~~l~~l-p~ 163 (432)
++++++++.++ . +|..+. .+|++|++++ +.++.++.. +..+++|++|++++|.+..+ |.
T Consensus 11 ~~l~~s~~~l~------~-ip~~~~--~~l~~L~l~~---------n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 72 (192)
T 1w8a_A 11 TTVDCTGRGLK------E-IPRDIP--LHTTELLLND---------NELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN 72 (192)
T ss_dssp TEEECTTSCCS------S-CCSCCC--TTCSEEECCS---------CCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT
T ss_pred CEEEcCCCCcC------c-CccCCC--CCCCEEECCC---------CcCCccCCccccccCCCCCEEECCCCCCCCcCHh
Confidence 68888888542 2 333232 3889999998 677777653 78899999999999998876 56
Q ss_pred hhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccccccceEeccc
Q 037465 164 TLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGG 230 (432)
Q Consensus 164 ~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~ 230 (432)
.+..+++|++|++++|......+..+..+++|+.|++++|......|..+..+++|++|++.++...
T Consensus 73 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 73 AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp TTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred HcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 7888999999999998844444555788899999999999777777778888889999888877665
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.29 E-value=8.4e-12 Score=125.17 Aligned_cols=160 Identities=18% Similarity=0.147 Sum_probs=115.8
Q ss_pred CccccccCcccEEE-EecCCcCcc---CccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEE
Q 037465 77 PMSFFEFDRLRSLL-IYDESLSNL---SLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLN 152 (432)
Q Consensus 77 ~~~~~~~~~L~~L~-l~~~~~~~~---~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~ 152 (432)
|..+.++++|+.|+ ++.+.+... .+....+.. + ....|++|++++ +.++.+|. ++.+++|++|+
T Consensus 402 ~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~-l-~~~~L~~L~Ls~---------n~l~~lp~-~~~l~~L~~L~ 469 (567)
T 1dce_A 402 KETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLK-M-EYADVRVLHLAH---------KDLTVLCH-LEQLLLVTHLD 469 (567)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH-H-HHTTCSEEECTT---------SCCSSCCC-GGGGTTCCEEE
T ss_pred HHHHHHHHhcccCcchhhcccchhhhhhhhcccccc-c-CccCceEEEecC---------CCCCCCcC-ccccccCcEee
Confidence 34566788888888 555532110 000000111 1 123589999999 67888886 99999999999
Q ss_pred eCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccC-CccCCcccccccccceEecccc
Q 037465 153 LSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYM-PIGISKLTSLRTLGKFVVGGGV 231 (432)
Q Consensus 153 L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~ 231 (432)
+++|.+..+|..++.+++|++|++++|. +..+| .++.+++|+.|++++|...... |..++.+++|+.|++.+|....
T Consensus 470 Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 470 LSHNRLRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp CCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred cCcccccccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 9999999999999999999999999998 66688 8899999999999999665554 8889999999999999888764
Q ss_pred cCCCCcCccccccCccCCcee
Q 037465 232 DGSSTCRLESLKNLQLLRECG 252 (432)
Q Consensus 232 ~~~~~~~~~~l~~l~~L~~L~ 252 (432)
.. ......+..+++|+.|+
T Consensus 548 ~~--~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 548 EE--GIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SS--SCTTHHHHHCTTCSEEE
T ss_pred Cc--cHHHHHHHHCcccCccC
Confidence 11 11112234477777764
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.28 E-value=4.9e-14 Score=122.03 Aligned_cols=111 Identities=24% Similarity=0.247 Sum_probs=83.0
Q ss_pred hhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCC
Q 037465 107 PELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELP 186 (432)
Q Consensus 107 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp 186 (432)
+..+..+++|++|++++ +.++.+| .+..+++|++|++++|.+..+|..+..+++|++|++++|. +..+|
T Consensus 41 ~~~~~~l~~L~~L~ls~---------n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~ 109 (198)
T 1ds9_A 41 DATLSTLKACKHLALST---------NNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS 109 (198)
T ss_dssp HHHHHHTTTCSEEECSE---------EEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH
T ss_pred hHHHhcCCCCCEEECCC---------CCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCC
Confidence 33578888888888888 6677777 7778888888888888888888777777888888888887 55565
Q ss_pred hhhhcccccceEEcCCCCccccCC--ccCCcccccccccceEeccc
Q 037465 187 AGIGKLMNMRSLLNDNTRSLKYMP--IGISKLTSLRTLGKFVVGGG 230 (432)
Q Consensus 187 ~~i~~l~~L~~L~l~~~~~~~~~p--~~l~~l~~L~~L~l~~~~~~ 230 (432)
.+..+++|+.|++++|.. ..++ ..+..+++|++|++.++...
T Consensus 110 -~~~~l~~L~~L~l~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 110 -GIEKLVNLRVLYMSNNKI-TNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp -HHHHHHHSSEEEESEEEC-CCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred -ccccCCCCCEEECCCCcC-CchhHHHHHhcCCCCCEEEecCCccc
Confidence 577788888888888743 3333 24667777777777776554
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.27 E-value=2.2e-11 Score=103.14 Aligned_cols=126 Identities=23% Similarity=0.342 Sum_probs=97.3
Q ss_pred EEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCcc-c
Q 037465 64 RHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPEN-V 142 (432)
Q Consensus 64 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~-~ 142 (432)
+.+.+.++++..+|..+. ++|++|++++|.+ .+ +.+..+..+++|++|++++ +.++.+|.. +
T Consensus 10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l-----~~-~~~~~~~~l~~L~~L~l~~---------n~l~~~~~~~~ 72 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKL-----QS-LPHGVFDKLTQLTKLSLSQ---------NQIQSLPDGVF 72 (177)
T ss_dssp TEEECCSSCCSSCCTTCC--TTCSEEECCSSCC-----CC-CCTTTTTTCTTCSEEECCS---------SCCCCCCTTTT
T ss_pred CEEEecCCCCccCCCCCC--CCCcEEEeCCCcc-----cE-eCHHHhcCcccccEEECCC---------CcceEeChhHc
Confidence 356777777777776543 6899999999854 32 2455578899999999998 667777554 6
Q ss_pred cCCccccEEEeCCccccccchh-hhccCCccEEecccccccccCChh-hhcccccceEEcCCCCccc
Q 037465 143 GKLIHLKYLNLSGLCIKRLPET-LCELYNLQKLDIRWCRNLRELPAG-IGKLMNMRSLLNDNTRSLK 207 (432)
Q Consensus 143 ~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~ 207 (432)
..+++|++|++++|.+..+|.. +..+++|++|++++|. +..+|.. +..+++|+.|++++|+...
T Consensus 73 ~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 73 DKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCeec
Confidence 7899999999999998888764 6788999999999987 5566665 4678899999999886544
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.24 E-value=3.3e-11 Score=103.57 Aligned_cols=125 Identities=19% Similarity=0.197 Sum_probs=86.6
Q ss_pred cEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccccccch-hh
Q 037465 87 RSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLPE-TL 165 (432)
Q Consensus 87 ~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~-~i 165 (432)
++++++++.++ . +|..+ .++|++|++++ +.++.+|..+..+++|++|++++|.+..++. .+
T Consensus 13 ~~l~~~~~~l~------~-ip~~~--~~~l~~L~L~~---------n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f 74 (193)
T 2wfh_A 13 TVVRCSNKGLK------V-LPKGI--PRDVTELYLDG---------NQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSF 74 (193)
T ss_dssp TEEECTTSCCS------S-CCSCC--CTTCCEEECCS---------SCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTT
T ss_pred CEEEcCCCCCC------c-CCCCC--CCCCCEEECCC---------CcCchhHHHhhcccCCCEEECCCCcCCEeCHhHc
Confidence 56777777442 2 22222 25788888888 6677777778888888888888888877764 57
Q ss_pred hccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCC-ccCCcccccccccceEeccc
Q 037465 166 CELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMP-IGISKLTSLRTLGKFVVGGG 230 (432)
Q Consensus 166 ~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~ 230 (432)
..+++|++|++++|......|..+..+++|+.|++++|... .+| ..+..+++|+.|++.++...
T Consensus 75 ~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 75 SNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCee
Confidence 78888888888888733333445777888888888888544 444 34677777888877776654
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.24 E-value=2.1e-11 Score=122.31 Aligned_cols=119 Identities=18% Similarity=0.149 Sum_probs=89.0
Q ss_pred cccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccccccchh
Q 037465 85 RLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLPET 164 (432)
Q Consensus 85 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~ 164 (432)
.|++|++++|.++ + +|. +..+++|++|++++ +.++.+|..++.+++|++|++++|.++.+| .
T Consensus 442 ~L~~L~Ls~n~l~-----~--lp~-~~~l~~L~~L~Ls~---------N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~ 503 (567)
T 1dce_A 442 DVRVLHLAHKDLT-----V--LCH-LEQLLLVTHLDLSH---------NRLRALPPALAALRCLEVLQASDNALENVD-G 503 (567)
T ss_dssp TCSEEECTTSCCS-----S--CCC-GGGGTTCCEEECCS---------SCCCCCCGGGGGCTTCCEEECCSSCCCCCG-G
T ss_pred CceEEEecCCCCC-----C--CcC-ccccccCcEeecCc---------ccccccchhhhcCCCCCEEECCCCCCCCCc-c
Confidence 4788888888542 2 444 78888888888888 667788888888888888888888888887 7
Q ss_pred hhccCCccEEecccccccccC--ChhhhcccccceEEcCCCCccccCCccC----Cccccccccc
Q 037465 165 LCELYNLQKLDIRWCRNLREL--PAGIGKLMNMRSLLNDNTRSLKYMPIGI----SKLTSLRTLG 223 (432)
Q Consensus 165 i~~l~~L~~L~l~~~~~~~~l--p~~i~~l~~L~~L~l~~~~~~~~~p~~l----~~l~~L~~L~ 223 (432)
++.+++|++|++++|. +..+ |..++.+++|+.|++++|+..+ .|..+ ..+++|+.|+
T Consensus 504 l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~l~~-~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 504 VANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp GTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSGGGG-SSSCTTHHHHHCTTCSEEE
T ss_pred cCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCcCCC-CccHHHHHHHHCcccCccC
Confidence 8888888888888887 4444 7888888888888888885433 33332 2366777664
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.13 E-value=4.1e-11 Score=112.21 Aligned_cols=265 Identities=11% Similarity=0.080 Sum_probs=130.8
Q ss_pred cCcccEEEEecCCcCccCccCCcchhhhcc-CCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCcccccc
Q 037465 83 FDRLRSLLIYDESLSNLSLNGSILPELFSK-LACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRL 161 (432)
Q Consensus 83 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l 161 (432)
+.+++.|.++++- ....+.. +.. +++|++|+|++ +.+..+...-+.++.++.+.+..+. +
T Consensus 24 ~~~l~~L~l~g~i------~~~~~~~-l~~~l~~L~~LdLs~---------n~i~~~~~~~~~~~~~~~~~~~~~~---I 84 (329)
T 3sb4_A 24 ANSITHLTLTGKL------NAEDFRH-LRDEFPSLKVLDISN---------AEIKMYSGKAGTYPNGKFYIYMANF---V 84 (329)
T ss_dssp HHHCSEEEEEEEE------CHHHHHH-HHHSCTTCCEEEEEE---------EEECCEEESSSSSGGGCCEEECTTE---E
T ss_pred hCceeEEEEeccc------cHHHHHH-HHHhhccCeEEecCc---------ceeEEecCccccccccccccccccc---c
Confidence 5677888887751 1111222 333 77788888888 5555221112223334555555543 3
Q ss_pred ch-hhhc--------cCCccEEecccccccccCCh-hhhcccccceEEcCCCCccccCCccCCcccccccccceEecccc
Q 037465 162 PE-TLCE--------LYNLQKLDIRWCRNLRELPA-GIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGV 231 (432)
Q Consensus 162 p~-~i~~--------l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~ 231 (432)
|. .+.. +++|+.+++.+ . +..++. .+..|++|+.+++.++.....-+..+..+.++..+.........
T Consensus 85 ~~~aF~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~ 162 (329)
T 3sb4_A 85 PAYAFSNVVNGVTKGKQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYR 162 (329)
T ss_dssp CTTTTEEEETTEEEECTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHH
T ss_pred CHHHhcccccccccccCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhh
Confidence 32 3445 78888888877 4 555544 36678888888888775444334556666666555443311100
Q ss_pred cCCCCcCccccccCccCC-ceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCC
Q 037465 232 DGSSTCRLESLKNLQLLR-ECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQP 310 (432)
Q Consensus 232 ~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 310 (432)
.........+..+..|+ .+.+.... .........-....+++.+.+.+.- ...........
T Consensus 163 -~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l--------------~~~~~~~l~~~ 224 (329)
T 3sb4_A 163 -FKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKL--------------DNADFKLIRDY 224 (329)
T ss_dssp -TSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECC--------------CHHHHHHHHHH
T ss_pred -ccccccccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeee--------------cHHHHHHHHHh
Confidence 00011122233444454 23333321 1222222222234455555555442 11111111112
Q ss_pred CCCCcEEEEeeeCCCCCChh-hhccCCCcEEEEeCCCCCCCCC--CCCCcc-cc-eEeccccccccccCccccCCCCCCC
Q 037465 311 PVNVEELWIVYYGGNIFPKW-LTSLTNLRNLYLSSCFNCEHLP--PLGKLP-LE-KLTLYNLKSVKRVGNEFLGIEESSE 385 (432)
Q Consensus 311 ~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~l~--~~~~l~-L~-~L~l~~c~~l~~~~~~~~~~~~~~~ 385 (432)
+++|+++++.++....+|.. +.++++|+.|++.++ +..++ .+..++ |+ .+++.+ .++.++...+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~------ 294 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFM------ 294 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTT------
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhh------
Confidence 46666666666555554443 336666666666665 33333 355566 66 666665 46666554443
Q ss_pred CCCCCCCCCcceEEEe
Q 037465 386 DDPSSSSSSSSELSIE 401 (432)
Q Consensus 386 ~~~~~~~~~L~~L~i~ 401 (432)
.+++|+.+.+.
T Consensus 295 -----~c~~L~~l~l~ 305 (329)
T 3sb4_A 295 -----GCDNLRYVLAT 305 (329)
T ss_dssp -----TCTTEEEEEEC
T ss_pred -----CCccCCEEEeC
Confidence 25566666653
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.12 E-value=2.8e-10 Score=96.26 Aligned_cols=125 Identities=24% Similarity=0.300 Sum_probs=94.8
Q ss_pred ccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCc-cccCCccccEEEeCCccccccchh
Q 037465 86 LRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE-NVGKLIHLKYLNLSGLCIKRLPET 164 (432)
Q Consensus 86 L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~lp~~ 164 (432)
.+.++++++.+. . ++. ...++|++|++++ +.++.+|. .+..+++|++|++++|.+..+|..
T Consensus 9 ~~~l~~~~~~l~-----~--~p~--~~~~~l~~L~l~~---------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 70 (177)
T 2o6r_A 9 GTEIRCNSKGLT-----S--VPT--GIPSSATRLELES---------NKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDG 70 (177)
T ss_dssp TTEEECCSSCCS-----S--CCT--TCCTTCSEEECCS---------SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT
T ss_pred CCEEEecCCCCc-----c--CCC--CCCCCCcEEEeCC---------CcccEeCHHHhcCcccccEEECCCCcceEeChh
Confidence 467888887542 2 222 2236899999999 66777754 468899999999999999888764
Q ss_pred -hhccCCccEEecccccccccCCh-hhhcccccceEEcCCCCccccCCcc-CCcccccccccceEeccc
Q 037465 165 -LCELYNLQKLDIRWCRNLRELPA-GIGKLMNMRSLLNDNTRSLKYMPIG-ISKLTSLRTLGKFVVGGG 230 (432)
Q Consensus 165 -i~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~l~~~~~~ 230 (432)
+..+++|++|++++|. +..+|. .+..+++|+.|++++|... .+|.. +..+++|++|++.++...
T Consensus 71 ~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 71 VFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred HccCCCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCee
Confidence 6889999999999998 555554 4678999999999999554 55544 577889999998877654
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.12 E-value=1.8e-10 Score=97.21 Aligned_cols=70 Identities=24% Similarity=0.420 Sum_probs=32.8
Q ss_pred Cccccc-CccccCCccccEEEeCCccccccchh-hhccCCccEEecccccccccCChh-hhcccccceEEcCCC
Q 037465 133 NLITEI-PENVGKLIHLKYLNLSGLCIKRLPET-LCELYNLQKLDIRWCRNLRELPAG-IGKLMNMRSLLNDNT 203 (432)
Q Consensus 133 ~~~~~l-p~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l~~~ 203 (432)
+.+..+ |..+..+++|++|++++|.+..+|.. +..+++|++|++++|. +..+|.. +..+++|+.|++++|
T Consensus 43 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 43 NQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS
T ss_pred CCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc-cceeCHHHhccccCCCEEEeCCC
Confidence 334443 33444455555555555555544433 2445555555555544 3333332 444555555555555
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.12 E-value=1.3e-10 Score=108.65 Aligned_cols=243 Identities=14% Similarity=0.114 Sum_probs=143.5
Q ss_pred cCCcceEEEeCCCCCCCCCCCCcc-cccCccccC-CccccEEEeCCccccccchhhhccCCccEEecccccccccCCh-h
Q 037465 112 KLACLRALVISQSSSFSHPGPNLI-TEIPENVGK-LIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPA-G 188 (432)
Q Consensus 112 ~l~~L~~L~L~~~~~~~~~~~~~~-~~lp~~~~~-l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~-~ 188 (432)
.+.+++.|.++++ .- .++ ..+.. +++|++|+|++|.+......-+.++.++.+.+..+ .+|. .
T Consensus 23 ~~~~l~~L~l~g~---------i~~~~~-~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~----~I~~~a 88 (329)
T 3sb4_A 23 EANSITHLTLTGK---------LNAEDF-RHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN----FVPAYA 88 (329)
T ss_dssp HHHHCSEEEEEEE---------ECHHHH-HHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT----EECTTT
T ss_pred hhCceeEEEEecc---------ccHHHH-HHHHHhhccCeEEecCcceeEEecCcccccccccccccccc----ccCHHH
Confidence 3667888988872 21 111 22333 78899999999997722111122233444444443 2332 3
Q ss_pred hhc--------ccccceEEcCCCCccccCC-ccCCcccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCC
Q 037465 189 IGK--------LMNMRSLLNDNTRSLKYMP-IGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNV 259 (432)
Q Consensus 189 i~~--------l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 259 (432)
+.. +++|+.|++.+ .+..++ .++..|++|+.+++..+.... .....+..+.++..+........
T Consensus 89 F~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~-----i~~~aF~~~~~l~~l~~~~~~~~ 161 (329)
T 3sb4_A 89 FSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPN-----LLPEALADSVTAIFIPLGSSDAY 161 (329)
T ss_dssp TEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCE-----ECTTSSCTTTCEEEECTTCTHHH
T ss_pred hcccccccccccCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccc-----cchhhhcCCCceEEecCcchhhh
Confidence 456 89999999998 344454 568899999999998776542 12233444444444443331000
Q ss_pred CCchhhhhcccccccCCc-eEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhh-ccCCC
Q 037465 260 SHLDEAERLQLYNQQNLL-CLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLT-SLTNL 337 (432)
Q Consensus 260 ~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~-~l~~L 337 (432)
..........+..+..|+ .+.+.... .........-..+.+++.+.+.+.........+. .+++|
T Consensus 162 ~~~~~i~~~~f~~~~~L~~~i~~~~~~-------------~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L 228 (329)
T 3sb4_A 162 RFKNRWEHFAFIEGEPLETTIQVGAMG-------------KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNL 228 (329)
T ss_dssp HTSTTTTTSCEEESCCCEEEEEECTTC-------------CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTC
T ss_pred hccccccccccccccccceeEEecCCC-------------cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCC
Confidence 000011123355666776 45554333 0122333333456678888887764432222233 58999
Q ss_pred cEEEEeCCCCCCCCC--CCCCcc-cceEeccccccccccCccccCCCCCCCCCCCCCCCCcc-eEEEeC
Q 037465 338 RNLYLSSCFNCEHLP--PLGKLP-LEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSS-ELSIEG 402 (432)
Q Consensus 338 ~~L~l~~~~~~~~l~--~~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~i~~ 402 (432)
+.|++.+|. ++.++ .+..++ |+.+++.++ ++.++...+. .+++|+ .+.+.+
T Consensus 229 ~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~-----------~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 229 VSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFS-----------NCGRLAGTLELPA 283 (329)
T ss_dssp CEEECTTBC-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTT-----------TCTTCCEEEEECT
T ss_pred eEEECCCCC-cceecHhhhhCCCCCCEEECCcc--cceehHHHhh-----------CChhccEEEEEcc
Confidence 999999984 55555 478899 999999885 8999887654 377888 888764
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.04 E-value=7.2e-10 Score=93.09 Aligned_cols=98 Identities=22% Similarity=0.328 Sum_probs=43.8
Q ss_pred EEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCcc-ccC
Q 037465 66 LGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPEN-VGK 144 (432)
Q Consensus 66 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~-~~~ 144 (432)
++++++.+..+|..+. ++|++|++++|.+ .+. .+..|..+++|++|++++ +.++.+|.. +..
T Consensus 14 l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i-----~~~-~~~~~~~l~~L~~L~Ls~---------N~l~~l~~~~f~~ 76 (170)
T 3g39_A 14 VDCSGKSLASVPTGIP--TTTQVLYLYDNQI-----TKL-EPGVFDRLTQLTRLDLDN---------NQLTVLPAGVFDK 76 (170)
T ss_dssp EECTTSCCSSCCSCCC--TTCSEEECCSSCC-----CCC-CTTTTTTCTTCSEEECCS---------SCCCCCCTTTTTT
T ss_pred EEeCCCCcCccCccCC--CCCcEEEcCCCcC-----Ccc-ChhhhcCcccCCEEECCC---------CCcCccChhhccC
Confidence 4444444444444332 4455555555522 111 233344455555555554 334444332 344
Q ss_pred CccccEEEeCCccccccch-hhhccCCccEEeccccc
Q 037465 145 LIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCR 180 (432)
Q Consensus 145 l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~ 180 (432)
+++|++|++++|.+..+|+ .+..+++|++|++++|.
T Consensus 77 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 77 LTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 4555555555555444443 24444445555554444
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.00 E-value=9.9e-10 Score=92.59 Aligned_cols=103 Identities=19% Similarity=0.229 Sum_probs=86.8
Q ss_pred ceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccccccc-hhhhccCCccEEecccccccccCChh-hhccc
Q 037465 116 LRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLP-ETLCELYNLQKLDIRWCRNLRELPAG-IGKLM 193 (432)
Q Consensus 116 L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~-i~~l~ 193 (432)
-+.+++++ +.++.+|..+. ++|++|++++|.+..++ ..+..+++|++|++++|. +..+|.. +..++
T Consensus 14 ~~~l~~~~---------n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~ 81 (174)
T 2r9u_A 14 QTLVNCQN---------IRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLT 81 (174)
T ss_dssp SSEEECCS---------SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred CcEEEeCC---------CCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcc
Confidence 37899998 77899998775 89999999999999884 578999999999999998 7777766 57899
Q ss_pred ccceEEcCCCCccccCCc-cCCcccccccccceEecccc
Q 037465 194 NMRSLLNDNTRSLKYMPI-GISKLTSLRTLGKFVVGGGV 231 (432)
Q Consensus 194 ~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~~ 231 (432)
+|+.|++++|... .+|. .+..+++|++|++.+|....
T Consensus 82 ~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 82 QLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp TCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred hhhEEECCCCccc-eeCHHHhccccCCCEEEeCCCCccc
Confidence 9999999999554 5554 48899999999999887653
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.00 E-value=1e-09 Score=92.14 Aligned_cols=101 Identities=21% Similarity=0.281 Sum_probs=72.2
Q ss_pred ccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-CccccCCccccEEEeCCccccccchh
Q 037465 86 LRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-PENVGKLIHLKYLNLSGLCIKRLPET 164 (432)
Q Consensus 86 L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~L~~~~l~~lp~~ 164 (432)
.++++++++.++. +|..+ .++|++|++++ +.++.+ |..+..+++|++|++++|.+..+|+.
T Consensus 11 ~~~l~~s~n~l~~-------ip~~~--~~~l~~L~L~~---------N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 72 (170)
T 3g39_A 11 GTTVDCSGKSLAS-------VPTGI--PTTTQVLYLYD---------NQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAG 72 (170)
T ss_dssp TTEEECTTSCCSS-------CCSCC--CTTCSEEECCS---------SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT
T ss_pred CCEEEeCCCCcCc-------cCccC--CCCCcEEEcCC---------CcCCccChhhhcCcccCCEEECCCCCcCccChh
Confidence 4678888875422 23222 37788888888 667666 55677888888888888888877764
Q ss_pred -hhccCCccEEecccccccccCCh-hhhcccccceEEcCCCCc
Q 037465 165 -LCELYNLQKLDIRWCRNLRELPA-GIGKLMNMRSLLNDNTRS 205 (432)
Q Consensus 165 -i~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~ 205 (432)
+..+++|++|++++|. +..+|. .+..+++|+.|++++|+.
T Consensus 73 ~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 73 VFDKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hccCCCCCCEEECCCCc-cCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 4778888888888887 555554 467788888888888754
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.93 E-value=1.9e-08 Score=96.36 Aligned_cols=262 Identities=13% Similarity=0.132 Sum_probs=139.5
Q ss_pred cCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCc-cccCCccccEEEeCCcccccc
Q 037465 83 FDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE-NVGKLIHLKYLNLSGLCIKRL 161 (432)
Q Consensus 83 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~l 161 (432)
+..++.+.+-+. + ..+...+|..+ +|+.+.+.. + ++.++. .|.+ .+|+.+.+.. .++.+
T Consensus 112 ~~~l~~i~ip~~-i------~~I~~~aF~~~-~L~~i~l~~---------~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I 171 (401)
T 4fdw_A 112 LKGYNEIILPNS-V------KSIPKDAFRNS-QIAKVVLNE---------G-LKSIGDMAFFN-STVQEIVFPS-TLEQL 171 (401)
T ss_dssp CSSCSEEECCTT-C------CEECTTTTTTC-CCSEEECCT---------T-CCEECTTTTTT-CCCCEEECCT-TCCEE
T ss_pred cCCccEEEECCc-c------CEehHhhcccC-CccEEEeCC---------C-ccEECHHhcCC-CCceEEEeCC-CccEe
Confidence 455555555443 1 12223335554 577777665 2 555533 3344 3577777664 45555
Q ss_pred c-hhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCC-ccCCcccccccccceEecccccCCCCcCc
Q 037465 162 P-ETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMP-IGISKLTSLRTLGKFVVGGGVDGSSTCRL 239 (432)
Q Consensus 162 p-~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 239 (432)
+ ..+..+.+|+.+++..+. +..++.....+.+|+.+.+..+ +..++ ..+..+++|+.+.+..+-. .-..
T Consensus 172 ~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~l~------~I~~ 242 (401)
T 4fdw_A 172 KEDIFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPENVS------TIGQ 242 (401)
T ss_dssp CSSTTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTTCC------EECT
T ss_pred hHHHhhCcccCCeeecCCCc-ceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCCcc------Cccc
Confidence 4 256666777777776665 5556655555667777776643 33333 4456666777766643211 1122
Q ss_pred cccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEE
Q 037465 240 ESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWI 319 (432)
Q Consensus 240 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 319 (432)
..+.. .+|+.+.+.. .+. ......+..|++|+.+.+.++....... ..-....+..+++|+.+.+
T Consensus 243 ~aF~~-~~L~~i~lp~--~i~---~I~~~aF~~c~~L~~l~l~~~~~~~~~~---------~~I~~~aF~~c~~L~~l~l 307 (401)
T 4fdw_A 243 EAFRE-SGITTVKLPN--GVT---NIASRAFYYCPELAEVTTYGSTFNDDPE---------AMIHPYCLEGCPKLARFEI 307 (401)
T ss_dssp TTTTT-CCCSEEEEET--TCC---EECTTTTTTCTTCCEEEEESSCCCCCTT---------CEECTTTTTTCTTCCEECC
T ss_pred ccccc-CCccEEEeCC--Ccc---EEChhHhhCCCCCCEEEeCCccccCCcc---------cEECHHHhhCCccCCeEEe
Confidence 22333 4566666532 111 1123456677788888877665211000 0112345667778888877
Q ss_pred eeeCCCCC-ChhhhccCCCcEEEEeCCCCCCCCC--CCCCcccceEeccccccccccCccccCCCCCCCCCCCCCCCCcc
Q 037465 320 VYYGGNIF-PKWLTSLTNLRNLYLSSCFNCEHLP--PLGKLPLEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSS 396 (432)
Q Consensus 320 ~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~l~--~~~~l~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 396 (432)
... ...+ ...+.++++|+.+.+..+ ++.+. .+..+.|+.+++.++. +..++...+.. ...+++
T Consensus 308 ~~~-i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~~L~~l~l~~n~-~~~l~~~~F~~----------~~~~l~ 373 (401)
T 4fdw_A 308 PES-IRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNTGIKEVKVEGTT-PPQVFEKVWYG----------FPDDIT 373 (401)
T ss_dssp CTT-CCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSSCCCEEEECCSS-CCBCCCSSCCC----------SCTTCC
T ss_pred CCc-eEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCCCCCEEEEcCCC-CcccccccccC----------CCCCcc
Confidence 642 3323 344557888888888654 33332 2333348888887775 55554433221 234677
Q ss_pred eEEEeC
Q 037465 397 ELSIEG 402 (432)
Q Consensus 397 ~L~i~~ 402 (432)
.|.+..
T Consensus 374 ~l~vp~ 379 (401)
T 4fdw_A 374 VIRVPA 379 (401)
T ss_dssp EEEECG
T ss_pred EEEeCH
Confidence 887765
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.91 E-value=3.2e-08 Score=94.80 Aligned_cols=220 Identities=15% Similarity=0.124 Sum_probs=98.0
Q ss_pred cCCcceEEEeCCCCCCCCCCCCcccccCc-cccCCccccEEEeCCccccccchh-hhccCCccEEecccccccccCC-hh
Q 037465 112 KLACLRALVISQSSSFSHPGPNLITEIPE-NVGKLIHLKYLNLSGLCIKRLPET-LCELYNLQKLDIRWCRNLRELP-AG 188 (432)
Q Consensus 112 ~l~~L~~L~L~~~~~~~~~~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp-~~ 188 (432)
.+..++.+.+.. .++.++. .|.++ +|+.+.+..+ ++.++.. +.. .+|+.+.+.. . +..++ ..
T Consensus 111 ~~~~l~~i~ip~----------~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~-l~~I~~~a 175 (401)
T 4fdw_A 111 ILKGYNEIILPN----------SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-T-LEQLKEDI 175 (401)
T ss_dssp ECSSCSEEECCT----------TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-T-CCEECSST
T ss_pred ecCCccEEEECC----------ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-C-ccEehHHH
Confidence 345555555553 2444422 33332 4666665543 4444432 223 3566666654 1 33332 23
Q ss_pred hhcccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhc
Q 037465 189 IGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERL 268 (432)
Q Consensus 189 i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 268 (432)
+..|++|+.+++..+ .+..++...-.+++|+.+.+..+ .. .-....+.++++|+.+.+.. .+... ...
T Consensus 176 F~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp~~-l~-----~I~~~aF~~~~~L~~l~l~~--~l~~I---~~~ 243 (401)
T 4fdw_A 176 FYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLLPVT-LK-----EIGSQAFLKTSQLKTIEIPE--NVSTI---GQE 243 (401)
T ss_dssp TTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEECCTT-CC-----EECTTTTTTCTTCCCEECCT--TCCEE---CTT
T ss_pred hhCcccCCeeecCCC-cceEechhhEeecccCEEEeCCc-hh-----eehhhHhhCCCCCCEEecCC--CccCc---ccc
Confidence 455666666666555 23333332222455555555321 11 11233445555566655543 11111 111
Q ss_pred ccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCC------CCChhhhccCCCcEEEE
Q 037465 269 QLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGN------IFPKWLTSLTNLRNLYL 342 (432)
Q Consensus 269 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~------~~~~~l~~l~~L~~L~l 342 (432)
.+.. .+|+.+.+..+- ..-....+..+++|+.+.+.++... .-+..+.++++|+.+.+
T Consensus 244 aF~~-~~L~~i~lp~~i---------------~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l 307 (401)
T 4fdw_A 244 AFRE-SGITTVKLPNGV---------------TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEI 307 (401)
T ss_dssp TTTT-CCCSEEEEETTC---------------CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECC
T ss_pred cccc-CCccEEEeCCCc---------------cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEe
Confidence 2222 456666653221 1111234555666666666554332 11333445666666666
Q ss_pred eCCCCCCCCC--CCCCcc-cceEeccccccccccCcccc
Q 037465 343 SSCFNCEHLP--PLGKLP-LEKLTLYNLKSVKRVGNEFL 378 (432)
Q Consensus 343 ~~~~~~~~l~--~~~~l~-L~~L~l~~c~~l~~~~~~~~ 378 (432)
..+ ++.++ .+..++ |+.+.|... ++.++...+
T Consensus 308 ~~~--i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF 342 (401)
T 4fdw_A 308 PES--IRILGQGLLGGNRKVTQLTIPAN--VTQINFSAF 342 (401)
T ss_dssp CTT--CCEECTTTTTTCCSCCEEEECTT--CCEECTTSS
T ss_pred CCc--eEEEhhhhhcCCCCccEEEECcc--ccEEcHHhC
Confidence 532 23222 344555 666666332 555554433
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.73 E-value=9.2e-10 Score=104.50 Aligned_cols=60 Identities=17% Similarity=0.077 Sum_probs=27.6
Q ss_pred CccccEEEeCCccccc-----cchhhhccCCccEEecccccccc----cCChhhhcccccceEEcCCCC
Q 037465 145 LIHLKYLNLSGLCIKR-----LPETLCELYNLQKLDIRWCRNLR----ELPAGIGKLMNMRSLLNDNTR 204 (432)
Q Consensus 145 l~~L~~L~L~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~----~lp~~i~~l~~L~~L~l~~~~ 204 (432)
.++|++|++++|.++. ++..+..+++|++|++++|.... .++..+...++|+.|++++|.
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 3455555555555432 33333445555555555554211 122233444455555555553
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.73 E-value=2.8e-08 Score=93.49 Aligned_cols=100 Identities=21% Similarity=0.131 Sum_probs=77.1
Q ss_pred EEeecC-CCCCCCccccccCcccEEEEec-CCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-Cccc
Q 037465 66 LGLNFE-GGAPLPMSFFEFDRLRSLLIYD-ESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-PENV 142 (432)
Q Consensus 66 L~l~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-p~~~ 142 (432)
++..+. .+..+|. +..+++|+.|++++ |.+ .. +++..|..+++|++|+|++ |.+..+ |..|
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l-----~~-~~~~~~~~l~~L~~L~l~~---------N~l~~~~~~~~ 76 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHL-----QH-LELRDLRGLGELRNLTIVK---------SGLRFVAPDAF 76 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSC-----CE-ECGGGSCSCCCCSEEECCS---------SCCCEECTTGG
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCC-----CC-cChhHhccccCCCEEECCC---------CccceeCHHHh
Confidence 466666 7778888 88888999999986 743 22 2456688899999999998 667776 4467
Q ss_pred cCCccccEEEeCCccccccchhhhccCCccEEecccccc
Q 037465 143 GKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRN 181 (432)
Q Consensus 143 ~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~ 181 (432)
.++++|++|+|++|.+..+|+.+.....|+.|++.+|..
T Consensus 77 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 77 HFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp GSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred cCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCc
Confidence 889999999999999888887655555589999988873
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.67 E-value=2.6e-08 Score=93.69 Aligned_cols=102 Identities=15% Similarity=0.181 Sum_probs=77.3
Q ss_pred EEEEecC-CcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC-ccccCCccccEEEeCCccccccch-h
Q 037465 88 SLLIYDE-SLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP-ENVGKLIHLKYLNLSGLCIKRLPE-T 164 (432)
Q Consensus 88 ~L~l~~~-~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp-~~~~~l~~L~~L~L~~~~l~~lp~-~ 164 (432)
.++.+++ .++ . +|. +..+.+|++|+|+++ +.++.+| ..|..+++|++|+|++|.+..+|+ .
T Consensus 12 ~v~~~~~n~l~------~-ip~-l~~~~~L~~L~l~~~--------n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 75 (347)
T 2ifg_A 12 GLRCTRDGALD------S-LHH-LPGAENLTELYIENQ--------QHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75 (347)
T ss_dssp CEECCSSCCCT------T-TTT-SCSCSCCSEEECCSC--------SSCCEECGGGSCSCCCCSEEECCSSCCCEECTTG
T ss_pred EEEcCCCCCCC------c-cCC-CCCCCCeeEEEccCC--------CCCCCcChhHhccccCCCEEECCCCccceeCHHH
Confidence 4566665 432 2 566 888889999999852 5677775 568889999999999999887765 6
Q ss_pred hhccCCccEEecccccccccCChhhhcccccceEEcCCCCcc
Q 037465 165 LCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSL 206 (432)
Q Consensus 165 i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~ 206 (432)
+..+++|++|+|++|. +..+|..+.....|+.|++.+|...
T Consensus 76 ~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 76 FHFTPRLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp GGSCSCCCEEECCSSC-CSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred hcCCcCCCEEeCCCCc-cceeCHHHcccCCceEEEeeCCCcc
Confidence 7889999999999988 6677766555445999999888543
No 146
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.64 E-value=6.1e-07 Score=85.84 Aligned_cols=80 Identities=11% Similarity=0.093 Sum_probs=47.3
Q ss_pred CCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCC--CCCCcc-cceEeccccccccccCccccCCCCCC
Q 037465 308 LQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLP--PLGKLP-LEKLTLYNLKSVKRVGNEFLGIEESS 384 (432)
Q Consensus 308 l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~--~~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~~~ 384 (432)
+..+.+|+.+.+.......-...+.++.+|+.+.+..+ ++.+. .+..+. |+.+.+... ++.++...+.
T Consensus 293 F~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~----- 363 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQ----- 363 (394)
T ss_dssp TTTCTTCCEEEECTTCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTTTBT-----
T ss_pred ccccccccccccccccceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc--ccEehHHHhh-----
Confidence 44566777777654322211334557777887777543 33332 355667 888777543 6777665443
Q ss_pred CCCCCCCCCCcceEEEeC
Q 037465 385 EDDPSSSSSSSSELSIEG 402 (432)
Q Consensus 385 ~~~~~~~~~~L~~L~i~~ 402 (432)
.+++|+++.+..
T Consensus 364 ------~C~~L~~i~lp~ 375 (394)
T 4fs7_A 364 ------GCINLKKVELPK 375 (394)
T ss_dssp ------TCTTCCEEEEEG
T ss_pred ------CCCCCCEEEECC
Confidence 367788887754
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.59 E-value=4.4e-09 Score=99.83 Aligned_cols=61 Identities=16% Similarity=0.185 Sum_probs=34.1
Q ss_pred CccccEEEeCCccccccc-hhhhc-----cCCccEEecccccccccCChhh-hcccccceEEcCCCCc
Q 037465 145 LIHLKYLNLSGLCIKRLP-ETLCE-----LYNLQKLDIRWCRNLRELPAGI-GKLMNMRSLLNDNTRS 205 (432)
Q Consensus 145 l~~L~~L~L~~~~l~~lp-~~i~~-----l~~L~~L~l~~~~~~~~lp~~i-~~l~~L~~L~l~~~~~ 205 (432)
+++|+.|++++|.+.... ..+.. ..+|++|++++|.....-...+ ..+++|+.|++++|..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l 138 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSL 138 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCC
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCC
Confidence 356778888877765322 12222 2577777777776322222222 2455677777777743
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.53 E-value=1.4e-06 Score=83.33 Aligned_cols=89 Identities=10% Similarity=0.052 Sum_probs=52.7
Q ss_pred ccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCC
Q 037465 269 QLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNC 348 (432)
Q Consensus 269 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 348 (432)
.+..+..++.+.+..+. ..-....+..+..++.+........ ...+..+.+|+.+.+..+ +
T Consensus 248 ~f~~~~~l~~~~~~~~~---------------~~i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~~--i 308 (394)
T 4fs7_A 248 VFYGCTDLESISIQNNK---------------LRIGGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLDS--V 308 (394)
T ss_dssp TTTTCSSCCEEEECCTT---------------CEECSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECTT--C
T ss_pred cccccccceeEEcCCCc---------------ceeeccccccccccceeccCceeec--cccccccccccccccccc--c
Confidence 34566677777765443 1112234455666766665443211 223447889999998765 3
Q ss_pred CCCC--CCCCcc-cceEeccccccccccCcccc
Q 037465 349 EHLP--PLGKLP-LEKLTLYNLKSVKRVGNEFL 378 (432)
Q Consensus 349 ~~l~--~~~~l~-L~~L~l~~c~~l~~~~~~~~ 378 (432)
+.+. .+..+. |+.++|.+ .++.++...+
T Consensus 309 ~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF 339 (394)
T 4fs7_A 309 KFIGEEAFESCTSLVSIDLPY--LVEEIGKRSF 339 (394)
T ss_dssp CEECTTTTTTCTTCCEECCCT--TCCEECTTTT
T ss_pred ceechhhhcCCCCCCEEEeCC--cccEEhHHhc
Confidence 3333 466778 99999864 3788876644
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.48 E-value=6.8e-08 Score=80.29 Aligned_cols=87 Identities=13% Similarity=0.093 Sum_probs=64.1
Q ss_pred CCCcEEEEeeeCCCC-CChhhhccCCCcEEEEeCCCCCCC--CCCCCC----cc-cceEeccccccccccCccccCCCCC
Q 037465 312 VNVEELWIVYYGGNI-FPKWLTSLTNLRNLYLSSCFNCEH--LPPLGK----LP-LEKLTLYNLKSVKRVGNEFLGIEES 383 (432)
Q Consensus 312 ~~L~~L~l~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~--l~~~~~----l~-L~~L~l~~c~~l~~~~~~~~~~~~~ 383 (432)
..|+.|++++|..+. --..+..+++|+.|++++|..+++ +..++. .+ |++|+|++|..+++.+...+.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~---- 136 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH---- 136 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG----
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh----
Confidence 457777777766432 122345889999999999976663 333444 36 999999999999988776654
Q ss_pred CCCCCCCCCCCcceEEEeCCcccccc
Q 037465 384 SEDDPSSSSSSSSELSIEGCPLLENR 409 (432)
Q Consensus 384 ~~~~~~~~~~~L~~L~i~~cp~L~~~ 409 (432)
.+++|++|++++||.+++.
T Consensus 137 -------~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 137 -------HFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp -------GCTTCCEEEEESCTTCCCH
T ss_pred -------cCCCCCEEECCCCCCCCch
Confidence 3799999999999999864
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.44 E-value=2.6e-07 Score=87.00 Aligned_cols=41 Identities=20% Similarity=0.275 Sum_probs=18.2
Q ss_pred CcceEEEeCCCCCCCC-CCCCcccccCccccCCccccEEEeCC
Q 037465 114 ACLRALVISQSSSFSH-PGPNLITEIPENVGKLIHLKYLNLSG 155 (432)
Q Consensus 114 ~~L~~L~L~~~~~~~~-~~~~~~~~lp~~~~~l~~L~~L~L~~ 155 (432)
..++.|.+..+. +.+ .....+..+..++..+++|+.|.+..
T Consensus 107 ~~v~~L~lg~~~-~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~ 148 (362)
T 2ra8_A 107 PSLKQITIGXWG-YEGEDCSDIADGIVENKEKFAHFEGLFWGD 148 (362)
T ss_dssp GGCSEEEECCCC-SSSCCSHHHHHHHHTTHHHHTTCSEEEECC
T ss_pred hhcceEEEcccc-cCCCcHHHHHHHHHHhhhhcchhhheeecC
Confidence 456777777531 110 00001112333344556666666644
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.44 E-value=6.4e-08 Score=91.15 Aligned_cols=41 Identities=15% Similarity=0.067 Sum_probs=22.2
Q ss_pred cCcccEEEEecCCcCccCc--cCCcchhhhccCCcceEEEeCC
Q 037465 83 FDRLRSLLIYDESLSNLSL--NGSILPELFSKLACLRALVISQ 123 (432)
Q Consensus 83 ~~~L~~L~l~~~~~~~~~~--~~~~~~~~~~~l~~L~~L~L~~ 123 (432)
...++.|.+.......... ....+..+...+++|+.|.+..
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~ 148 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGD 148 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecC
Confidence 3457788877653210000 0001233356788999999876
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.31 E-value=1.9e-05 Score=75.35 Aligned_cols=106 Identities=8% Similarity=0.099 Sum_probs=68.0
Q ss_pred cccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCCC-hhhhccCCCcEEEEeCCC
Q 037465 268 LQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFP-KWLTSLTNLRNLYLSSCF 346 (432)
Q Consensus 268 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~ 346 (432)
..+..+..|+.+.+.... ..-....+..+..|+.+.+... ...++ ..+.++.+|+.+.+..+
T Consensus 259 ~aF~~c~~L~~i~lp~~~---------------~~I~~~aF~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~- 321 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSV---------------VSIGTGAFMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG- 321 (394)
T ss_dssp TTTTTCSSCCEEECCTTC---------------CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-
T ss_pred ceeeecccccEEeccccc---------------ceecCcccccccccccccCCCc-ccccCceeecCCCCcCEEEeCCc-
Confidence 345677888888775432 1112234566788888887532 22233 34557889999988764
Q ss_pred CCCCCC--CCCCcc-cceEeccccccccccCccccCCCCCCCCCCCCCCCCcceEEEeCCc
Q 037465 347 NCEHLP--PLGKLP-LEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELSIEGCP 404 (432)
Q Consensus 347 ~~~~l~--~~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~cp 404 (432)
++.+. .+..+. |+.+.|-. +++.++...+. .|.+|+.+.+.+..
T Consensus 322 -v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~-----------~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 322 -ITQILDDAFAGCEQLERIAIPS--SVTKIPESAFS-----------NCTALNNIEYSGSR 368 (394)
T ss_dssp -CCEECTTTTTTCTTCCEEEECT--TCCBCCGGGGT-----------TCTTCCEEEESSCH
T ss_pred -ccEehHhHhhCCCCCCEEEECc--ccCEEhHhHhh-----------CCCCCCEEEECCce
Confidence 33333 466778 99998854 37888776554 37888888887754
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.23 E-value=6.6e-07 Score=75.91 Aligned_cols=116 Identities=16% Similarity=0.059 Sum_probs=67.2
Q ss_pred ccccccCcccEEEEecC-CcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccc-----cCccccCCccccEE
Q 037465 78 MSFFEFDRLRSLLIYDE-SLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITE-----IPENVGKLIHLKYL 151 (432)
Q Consensus 78 ~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~-----lp~~~~~l~~L~~L 151 (432)
..+...+.|++|++++| .+..... .. +...+...++|++|+|++| .++. +...+...+.|++|
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~-~~-l~~~L~~~~~L~~L~Ls~n---------~i~~~g~~~l~~~L~~n~~L~~L 98 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTL-KA-CAEALKTNTYVKKFSIVGT---------RSNDPVAFALAEMLKVNNTLKSL 98 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHH-HH-HHHHHTTCCSCCEEECTTS---------CCCHHHHHHHHHHHHHCSSCCEE
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHH-HH-HHHHHHhCCCcCEEECcCC---------CCChHHHHHHHHHHHhCCCcCEE
Confidence 34456677777777777 5533111 11 3344566677777777773 3332 33344455667777
Q ss_pred EeCCccccc-----cchhhhccCCccEEec--cccccccc----CChhhhcccccceEEcCCCC
Q 037465 152 NLSGLCIKR-----LPETLCELYNLQKLDI--RWCRNLRE----LPAGIGKLMNMRSLLNDNTR 204 (432)
Q Consensus 152 ~L~~~~l~~-----lp~~i~~l~~L~~L~l--~~~~~~~~----lp~~i~~l~~L~~L~l~~~~ 204 (432)
+|++|.|.. +...+...++|++|++ ++|.+... +...+...++|++|++++|.
T Consensus 99 ~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 99 NVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp ECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred ECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 777777652 4455666667777777 55653222 23334455667777777663
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.19 E-value=4.1e-07 Score=75.57 Aligned_cols=41 Identities=15% Similarity=0.124 Sum_probs=23.1
Q ss_pred ccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCc
Q 037465 218 SLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHL 262 (432)
Q Consensus 218 ~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 262 (432)
+|++|++++|...+ ...+..+.++++|+.|++++|..+++.
T Consensus 115 ~L~~L~Ls~C~~IT----D~Gl~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 115 SMLEMEIISCGNVT----DKGIIALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp HCCEEEEESCTTCC----HHHHHHGGGCTTCCEEEEESCTTCCCH
T ss_pred CCCEEEcCCCCcCC----HHHHHHHhcCCCCCEEECCCCCCCCch
Confidence 45555555544333 334445556666777777777666654
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.10 E-value=1.1e-06 Score=78.53 Aligned_cols=36 Identities=28% Similarity=0.243 Sum_probs=15.9
Q ss_pred CccccEEEeCCcccccc---chhhhccCCccEEeccccc
Q 037465 145 LIHLKYLNLSGLCIKRL---PETLCELYNLQKLDIRWCR 180 (432)
Q Consensus 145 l~~L~~L~L~~~~l~~l---p~~i~~l~~L~~L~l~~~~ 180 (432)
+++|+.|+|++|.+..+ |..+..+++|+.|+|++|.
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~ 207 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE 207 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc
Confidence 44444444444443322 2233444444444444444
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.09 E-value=1.7e-06 Score=73.29 Aligned_cols=110 Identities=14% Similarity=0.129 Sum_probs=84.4
Q ss_pred CCceEEEEeecC-CCCC-----CCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCC
Q 037465 60 GGKVRHLGLNFE-GGAP-----LPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPN 133 (432)
Q Consensus 60 ~~~i~~L~l~~~-~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ 133 (432)
...++.|++.++ .+.. +...+...+.|++|++++|.+..... ..+...+...+.|++|+|++ +
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~--~~l~~~L~~n~~L~~L~L~~---------N 103 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVA--FALAEMLKVNNTLKSLNVES---------N 103 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHH--HHHHHHHHHCSSCCEEECCS---------S
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHH--HHHHHHHHhCCCcCEEECcC---------C
Confidence 567999999998 7765 45566778899999999996543211 11445577789999999999 4
Q ss_pred cccc-----cCccccCCccccEEEe--CCcccc-----ccchhhhccCCccEEeccccc
Q 037465 134 LITE-----IPENVGKLIHLKYLNL--SGLCIK-----RLPETLCELYNLQKLDIRWCR 180 (432)
Q Consensus 134 ~~~~-----lp~~~~~l~~L~~L~L--~~~~l~-----~lp~~i~~l~~L~~L~l~~~~ 180 (432)
.++. +...+...+.|++|++ ++|.++ .+...+...++|++|++++|.
T Consensus 104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 104 FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 5544 5566777889999999 888877 355667777999999999987
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.99 E-value=0.00015 Score=69.11 Aligned_cols=90 Identities=13% Similarity=0.166 Sum_probs=61.0
Q ss_pred hcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCC--CCCCcc-cceEeccccccccccCccccCCCC
Q 037465 306 KALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLP--PLGKLP-LEKLTLYNLKSVKRVGNEFLGIEE 382 (432)
Q Consensus 306 ~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~--~~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~ 382 (432)
..+..+..|+.+.+.......-...+.++++|+.+.+... +..++ .+..+. |+.+.|.. +++.++...+.
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~--- 331 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPE--GITQILDDAFA--- 331 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTT---
T ss_pred ceeeecccccEEecccccceecCcccccccccccccCCCc--ccccCceeecCCCCcCEEEeCC--cccEehHhHhh---
Confidence 3566778888888754333322444558899999998643 34444 467788 99999965 48888776553
Q ss_pred CCCCCCCCCCCCcceEEEe------------CCccccccc
Q 037465 383 SSEDDPSSSSSSSSELSIE------------GCPLLENRY 410 (432)
Q Consensus 383 ~~~~~~~~~~~~L~~L~i~------------~cp~L~~~~ 410 (432)
.|.+|+++.|. +|.+|+++-
T Consensus 332 --------~C~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~ 363 (394)
T 4gt6_A 332 --------GCEQLERIAIPSSVTKIPESAFSNCTALNNIE 363 (394)
T ss_dssp --------TCTTCCEEEECTTCCBCCGGGGTTCTTCCEEE
T ss_pred --------CCCCCCEEEECcccCEEhHhHhhCCCCCCEEE
Confidence 36778877774 577777763
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.87 E-value=0.00041 Score=65.59 Aligned_cols=69 Identities=16% Similarity=0.067 Sum_probs=40.3
Q ss_pred cCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCC--CCCCcc-cceEeccccccccccCcccc
Q 037465 307 ALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLP--PLGKLP-LEKLTLYNLKSVKRVGNEFL 378 (432)
Q Consensus 307 ~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~--~~~~l~-L~~L~l~~c~~l~~~~~~~~ 378 (432)
.+..+..|+.+.+.......-...+..+++|+.+.+.++. ++.++ .+..+. |+.+.|.. +++.++...+
T Consensus 258 aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF 329 (379)
T 4h09_A 258 LLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSA-IETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAF 329 (379)
T ss_dssp TTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTT
T ss_pred ccceeehhccccccccceeccccccccccccccccccccc-cceehhhhhcCCCCCCEEEcCc--cccEEHHHHh
Confidence 4555667777777543222212344577888888887652 33333 356667 88887753 3677766544
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.83 E-value=4.4e-06 Score=74.64 Aligned_cols=82 Identities=21% Similarity=0.148 Sum_probs=44.8
Q ss_pred ccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccccccchhhhccC--CccEEecccccccccCCh-
Q 037465 111 SKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELY--NLQKLDIRWCRNLRELPA- 187 (432)
Q Consensus 111 ~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~--~L~~L~l~~~~~~~~lp~- 187 (432)
..+++|+.|+|++|.. ..+..+|..+..+++|++|+|++|.+..+. .+..+. +|++|++++|.....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l------~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~ 239 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRL------YRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQ 239 (267)
T ss_dssp HHCTTCCEEECTTSCC------CCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSH
T ss_pred hhCCCCCEEECCCCCC------CCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcc
Confidence 4566777777777311 112233444556677777777777766552 344444 666677666664444431
Q ss_pred ------hhhcccccceEE
Q 037465 188 ------GIGKLMNMRSLL 199 (432)
Q Consensus 188 ------~i~~l~~L~~L~ 199 (432)
.+..+++|+.|+
T Consensus 240 ~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 240 STYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHHHCTTCCEES
T ss_pred hhHHHHHHHHCcccCeEC
Confidence 234555666554
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.77 E-value=0.00089 Score=63.25 Aligned_cols=69 Identities=17% Similarity=0.146 Sum_probs=45.8
Q ss_pred cCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCC--CCCCcc-cceEeccccccccccCcccc
Q 037465 307 ALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLP--PLGKLP-LEKLTLYNLKSVKRVGNEFL 378 (432)
Q Consensus 307 ~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~--~~~~l~-L~~L~l~~c~~l~~~~~~~~ 378 (432)
.+..+..|+.+.+-......-...+.++.+|+.+.+... +..++ .+..++ |+.+.+.++. ++.++...+
T Consensus 235 ~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~-i~~I~~~aF 306 (379)
T 4h09_A 235 AFYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSA-IETLEPRVF 306 (379)
T ss_dssp TTTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTT-CCEECTTTT
T ss_pred cccCCccceEEEcCCCccEeCccccceeehhcccccccc--ceeccccccccccccccccccccc-cceehhhhh
Confidence 456677888888855322222344558899999999764 33333 466788 9999997654 778876644
No 161
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.41 E-value=0.0013 Score=65.60 Aligned_cols=42 Identities=14% Similarity=0.262 Sum_probs=36.6
Q ss_pred ChhHHHHHHHHHHhCCCCccccCC----eeecHHHHHHHHHhhccce
Q 037465 1 MEMIGEEYFNMLATRSFFQEIEKD----CNMHDIVHDFAQFVCRKEC 43 (432)
Q Consensus 1 ~e~~~~~~~~~L~~~~li~~~~~~----~~mhdl~~~~~~~~~~~~~ 43 (432)
+|++|+ ||++|+++||++....+ |+|||++|++|++++.+++
T Consensus 427 ~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 427 DDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp THHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 467888 99999999999987543 9999999999999988765
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.82 E-value=0.0048 Score=52.02 Aligned_cols=85 Identities=14% Similarity=0.142 Sum_probs=38.0
Q ss_pred cCcccEEEEecC-CcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccc-----cCccccCCccccEEEeCCc
Q 037465 83 FDRLRSLLIYDE-SLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITE-----IPENVGKLIHLKYLNLSGL 156 (432)
Q Consensus 83 ~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~-----lp~~~~~l~~L~~L~L~~~ 156 (432)
-+.|+.|+++++ .+..... ..+...+.....|+.|+|++ +.+++ +...+..-+.|+.|+|++|
T Consensus 40 n~~L~~L~L~~nn~igd~ga--~~la~aL~~N~~L~~L~L~~---------n~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERI--RSLIEAACNSKHIEKFSLAN---------TAISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHH--HHHHHHHTTCSCCCEEECTT---------SCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred CCCccEEECCCCCCCCHHHH--HHHHHHHhhCCCcCEEEccC---------CCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 445666666553 3211100 01233345555666666666 23332 2222333345666666666
Q ss_pred ccc-----ccchhhhccCCccEEeccc
Q 037465 157 CIK-----RLPETLCELYNLQKLDIRW 178 (432)
Q Consensus 157 ~l~-----~lp~~i~~l~~L~~L~l~~ 178 (432)
.|. .+-..+..-+.|+.|+|++
T Consensus 109 ~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 109 FLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp BCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred cCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 554 2222333334456666554
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.42 E-value=0.014 Score=49.13 Aligned_cols=110 Identities=13% Similarity=0.135 Sum_probs=76.5
Q ss_pred CCceEEEEeecC-CCCC-----CCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCC
Q 037465 60 GGKVRHLGLNFE-GGAP-----LPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPN 133 (432)
Q Consensus 60 ~~~i~~L~l~~~-~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ 133 (432)
...++.|.++++ .+.. +..++..-+.|+.|++++|.+.+... ..+...+...+.|+.|+|++ +
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga--~alA~aL~~N~tL~~L~L~~---------N 108 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEA--RGLIELIETSPSLRVLNVES---------N 108 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHH--TTHHHHHHHCSSCCEEECCS---------S
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHH--HHHHHHHhcCCccCeEecCC---------C
Confidence 457888999874 5543 45556667789999999997654221 22566678889999999999 5
Q ss_pred cccc-----cCccccCCccccEEEeCCcc---cc-----ccchhhhccCCccEEeccccc
Q 037465 134 LITE-----IPENVGKLIHLKYLNLSGLC---IK-----RLPETLCELYNLQKLDIRWCR 180 (432)
Q Consensus 134 ~~~~-----lp~~~~~l~~L~~L~L~~~~---l~-----~lp~~i~~l~~L~~L~l~~~~ 180 (432)
.++. +...+..-..|+.|+|+++. +. .+...+..-+.|..|+++.+.
T Consensus 109 ~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 109 FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 5554 44455666779999998653 33 244455556778888887654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.13 E-value=0.032 Score=43.62 Aligned_cols=46 Identities=22% Similarity=0.236 Sum_probs=30.4
Q ss_pred Cccc--ccCccccCCccccEEEeCCccccccch-hhhccCCccEEeccccc
Q 037465 133 NLIT--EIPENVGKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCR 180 (432)
Q Consensus 133 ~~~~--~lp~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~ 180 (432)
..++ .+|..+. .+|++|+|++|.|..+|. .+..+++|++|+|.+|.
T Consensus 18 ~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 18 RGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp SCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 5555 6665432 457777777777777765 35667777777777766
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.06 E-value=0.15 Score=39.74 Aligned_cols=54 Identities=17% Similarity=0.223 Sum_probs=42.5
Q ss_pred cEEEeCCcccc--ccchhhhccCCccEEecccccccccCChh-hhcccccceEEcCCCCc
Q 037465 149 KYLNLSGLCIK--RLPETLCELYNLQKLDIRWCRNLRELPAG-IGKLMNMRSLLNDNTRS 205 (432)
Q Consensus 149 ~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l~~~~~ 205 (432)
..++.++..++ .+|..+. .+|++|+|++|. +..+|.. +..+++|+.|++.+|+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCe
Confidence 47788888888 8886543 479999999998 7777665 56788999999998854
No 166
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=89.40 E-value=0.27 Score=53.73 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHhCCCCccccCC----eeecHHHHHHHHHhhccc
Q 037465 2 EMIGEEYFNMLATRSFFQEIEKD----CNMHDIVHDFAQFVCRKE 42 (432)
Q Consensus 2 e~~~~~~~~~L~~~~li~~~~~~----~~mhdl~~~~~~~~~~~~ 42 (432)
++.+++++++|++++|++....+ |+|||+++++++..+.++
T Consensus 408 ~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 56789999999999999987554 999999999999887664
No 167
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=75.70 E-value=1.9 Score=42.85 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHhCCCCccccCC----eeecHHHHHHHHHhh
Q 037465 3 MIGEEYFNMLATRSFFQEIEKD----CNMHDIVHDFAQFVC 39 (432)
Q Consensus 3 ~~~~~~~~~L~~~~li~~~~~~----~~mhdl~~~~~~~~~ 39 (432)
+.++.++++|+++||++....+ |.||++++++++...
T Consensus 409 ~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 409 EEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 4578899999999999865432 999999999998773
No 168
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=73.03 E-value=2.4 Score=44.97 Aligned_cols=33 Identities=15% Similarity=0.085 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHhCCCCccccCC--eeecHHHHHHH
Q 037465 3 MIGEEYFNMLATRSFFQEIEKD--CNMHDIVHDFA 35 (432)
Q Consensus 3 ~~~~~~~~~L~~~~li~~~~~~--~~mhdl~~~~~ 35 (432)
+.++++|++|+++||++..... |+|||++++++
T Consensus 402 edAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 4689999999999999985333 99999998865
No 169
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=32.11 E-value=46 Score=23.96 Aligned_cols=14 Identities=29% Similarity=0.527 Sum_probs=7.4
Q ss_pred hccCCcceEEEeCC
Q 037465 110 FSKLACLRALVISQ 123 (432)
Q Consensus 110 ~~~l~~L~~L~L~~ 123 (432)
|..|.+|+.+.+..
T Consensus 39 F~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 39 FSGCTALEKLILTG 52 (100)
T ss_dssp STTCTTCCCEEECC
T ss_pred HhccCCccEEEEcC
Confidence 55555555555544
Done!