Query 037469
Match_columns 429
No_of_seqs 283 out of 608
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 12:36:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037469.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037469hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4698 Uncharacterized conser 100.0 9.7E-82 2.1E-86 642.8 19.2 424 1-427 7-469 (475)
2 PF04577 DUF563: Protein of un 100.0 7E-29 1.5E-33 231.2 20.7 197 145-366 1-204 (206)
3 COG4421 Capsular polysaccharid 99.8 4.1E-18 8.9E-23 167.8 16.6 272 56-370 51-331 (368)
4 cd05212 NAD_bind_m-THF_DH_Cycl 89.3 2.7 5.9E-05 37.7 9.0 69 261-336 28-98 (140)
5 PF02882 THF_DHG_CYH_C: Tetrah 86.7 3.5 7.7E-05 37.9 8.1 69 262-337 37-107 (160)
6 PRK14178 bifunctional 5,10-met 86.3 4.3 9.4E-05 40.7 9.2 72 261-338 152-224 (279)
7 PRK14188 bifunctional 5,10-met 80.0 12 0.00026 37.8 9.5 70 261-337 158-229 (296)
8 cd00316 Oxidoreductase_nitroge 77.6 7.3 0.00016 40.0 7.4 97 259-360 150-251 (399)
9 PRK14194 bifunctional 5,10-met 76.8 17 0.00036 36.9 9.4 70 261-337 159-230 (301)
10 PRK14179 bifunctional 5,10-met 74.3 23 0.0005 35.6 9.6 70 261-337 158-229 (284)
11 PRK14190 bifunctional 5,10-met 71.5 24 0.00052 35.5 9.0 71 261-337 158-229 (284)
12 cd01080 NAD_bind_m-THF_DH_Cycl 68.5 11 0.00023 34.8 5.4 75 260-340 43-119 (168)
13 PF00148 Oxidored_nitro: Nitro 68.2 7.7 0.00017 40.0 4.9 97 259-359 142-243 (398)
14 PRK14170 bifunctional 5,10-met 68.1 33 0.00071 34.6 9.1 70 261-337 157-228 (284)
15 PRK14189 bifunctional 5,10-met 67.9 30 0.00064 34.9 8.8 70 261-337 158-229 (285)
16 PRK14191 bifunctional 5,10-met 67.9 30 0.00066 34.8 8.8 72 261-338 157-229 (285)
17 cd01971 Nitrogenase_VnfN_like 67.3 16 0.00034 38.6 7.1 99 260-361 154-261 (427)
18 COG3959 Transketolase, N-termi 66.0 9.4 0.0002 37.2 4.6 48 263-311 173-226 (243)
19 PLN02897 tetrahydrofolate dehy 65.4 37 0.0008 35.2 9.0 69 262-337 215-285 (345)
20 PRK14171 bifunctional 5,10-met 65.2 40 0.00086 34.0 9.1 68 263-337 161-230 (288)
21 PRK02910 light-independent pro 64.1 15 0.00033 39.8 6.4 100 259-361 156-261 (519)
22 COG0190 FolD 5,10-methylene-te 64.1 35 0.00075 34.4 8.3 72 260-337 155-227 (283)
23 PRK08306 dipicolinate synthase 64.0 33 0.00072 34.4 8.4 81 278-366 14-121 (296)
24 cd01972 Nitrogenase_VnfE_like 64.0 12 0.00026 39.3 5.5 98 260-360 160-265 (426)
25 PRK14169 bifunctional 5,10-met 63.9 44 0.00095 33.6 9.1 69 262-337 157-227 (282)
26 cd01980 Chlide_reductase_Y Chl 63.9 16 0.00035 38.4 6.3 96 260-361 158-254 (416)
27 cd01981 Pchlide_reductase_B Pc 63.7 25 0.00054 36.9 7.8 99 260-361 161-265 (430)
28 PRK14177 bifunctional 5,10-met 63.6 46 0.00099 33.5 9.1 69 262-337 160-230 (284)
29 PRK08306 dipicolinate synthase 63.1 35 0.00077 34.2 8.4 58 302-366 202-263 (296)
30 PRK14172 bifunctional 5,10-met 62.4 48 0.001 33.3 9.0 69 262-337 159-229 (278)
31 PLN02616 tetrahydrofolate dehy 62.4 43 0.00093 34.9 8.9 69 262-337 232-302 (364)
32 PF05222 AlaDh_PNT_N: Alanine 62.1 47 0.001 29.5 8.1 90 272-366 10-115 (136)
33 PRK14166 bifunctional 5,10-met 61.7 49 0.0011 33.3 9.0 69 262-337 158-228 (282)
34 PRK14182 bifunctional 5,10-met 61.6 52 0.0011 33.1 9.1 69 262-337 158-228 (282)
35 PRK14173 bifunctional 5,10-met 61.2 49 0.0011 33.3 8.9 70 261-337 155-226 (287)
36 cd01967 Nitrogenase_MoFe_alpha 61.0 32 0.00068 35.7 7.9 96 260-360 159-258 (406)
37 PRK14186 bifunctional 5,10-met 60.3 54 0.0012 33.3 9.0 69 262-337 159-229 (297)
38 PF01520 Amidase_3: N-acetylmu 58.9 21 0.00046 32.1 5.5 46 279-324 31-81 (175)
39 PRK14181 bifunctional 5,10-met 58.4 60 0.0013 32.7 9.0 70 261-337 153-228 (287)
40 PLN02516 methylenetetrahydrofo 58.0 61 0.0013 32.9 9.0 70 261-337 167-238 (299)
41 PRK02261 methylaspartate mutas 57.6 35 0.00075 30.4 6.4 54 260-313 2-55 (137)
42 PRK14183 bifunctional 5,10-met 57.2 70 0.0015 32.2 9.2 69 262-337 158-228 (281)
43 cd02696 MurNAc-LAA N-acetylmur 56.2 28 0.0006 31.3 5.8 46 279-324 32-82 (172)
44 PRK14180 bifunctional 5,10-met 56.0 69 0.0015 32.2 8.9 69 262-337 159-229 (282)
45 TIGR02853 spore_dpaA dipicolin 55.9 72 0.0016 31.9 9.1 58 301-364 200-260 (287)
46 PRK14187 bifunctional 5,10-met 55.4 71 0.0015 32.3 8.9 69 262-337 161-231 (294)
47 PRK14184 bifunctional 5,10-met 54.5 67 0.0014 32.4 8.5 71 262-338 158-233 (286)
48 PRK14174 bifunctional 5,10-met 54.0 79 0.0017 32.0 9.0 71 261-337 159-234 (295)
49 cd01079 NAD_bind_m-THF_DH NAD 53.9 38 0.00083 32.3 6.4 74 260-337 61-155 (197)
50 PRK10792 bifunctional 5,10-met 53.4 79 0.0017 31.9 8.8 72 261-338 159-231 (285)
51 PRK14193 bifunctional 5,10-met 52.8 83 0.0018 31.7 8.9 70 261-337 158-231 (284)
52 COG1920 Predicted nucleotidylt 52.8 44 0.00096 31.9 6.5 78 281-366 76-163 (210)
53 PRK14168 bifunctional 5,10-met 52.3 86 0.0019 31.8 9.0 70 261-337 161-236 (297)
54 PRK14167 bifunctional 5,10-met 50.7 84 0.0018 31.9 8.6 69 262-337 158-232 (297)
55 COG2185 Sbm Methylmalonyl-CoA 50.6 70 0.0015 29.0 7.2 47 259-308 10-59 (143)
56 PF13271 DUF4062: Domain of un 50.5 37 0.00079 27.3 5.0 43 279-321 16-63 (83)
57 PRK14176 bifunctional 5,10-met 49.2 1E+02 0.0022 31.1 8.9 71 261-338 164-236 (287)
58 PRK14185 bifunctional 5,10-met 49.2 1E+02 0.0022 31.2 8.9 69 262-337 158-232 (293)
59 CHL00076 chlB photochlorophyll 49.1 52 0.0011 35.7 7.4 100 259-361 161-266 (513)
60 cd01968 Nitrogenase_NifE_I Nit 48.8 26 0.00056 36.6 4.8 96 261-361 158-257 (410)
61 PRK14175 bifunctional 5,10-met 48.2 36 0.00079 34.3 5.6 71 262-338 159-230 (286)
62 PRK12548 shikimate 5-dehydroge 47.8 89 0.0019 31.1 8.3 93 263-362 152-255 (289)
63 TIGR01501 MthylAspMutase methy 46.9 50 0.0011 29.5 5.7 39 279-317 19-58 (134)
64 PF00389 2-Hacid_dh: D-isomer 45.6 42 0.00091 29.0 5.0 78 279-363 9-87 (133)
65 COG1703 ArgK Putative periplas 45.0 27 0.00058 35.6 4.0 80 279-362 133-219 (323)
66 TIGR00640 acid_CoA_mut_C methy 42.9 70 0.0015 28.2 6.0 40 280-319 21-61 (132)
67 TIGR02667 moaB_proteo molybden 39.2 1.2E+02 0.0027 27.6 7.2 55 276-330 22-83 (163)
68 PRK10319 N-acetylmuramoyl-l-al 39.0 58 0.0013 32.7 5.4 55 281-340 91-150 (287)
69 TIGR00507 aroE shikimate 5-deh 38.7 1.2E+02 0.0027 29.6 7.6 50 309-363 177-234 (270)
70 cd01078 NAD_bind_H4MPT_DH NADP 38.5 1.3E+02 0.0028 27.7 7.3 70 263-337 54-128 (194)
71 TIGR01284 alt_nitrog_alph nitr 38.1 37 0.0008 36.3 4.1 96 261-361 199-298 (457)
72 TIGR02883 spore_cwlD N-acetylm 37.4 83 0.0018 29.2 5.9 46 279-324 33-97 (189)
73 TIGR02370 pyl_corrinoid methyl 36.7 1.2E+02 0.0026 28.5 6.9 61 259-319 82-143 (197)
74 PF02737 3HCDH_N: 3-hydroxyacy 36.5 43 0.00093 30.9 3.8 76 279-361 94-173 (180)
75 TIGR01278 DPOR_BchB light-inde 36.2 68 0.0015 34.8 5.8 99 260-361 157-264 (511)
76 cd01977 Nitrogenase_VFe_alpha 34.4 58 0.0013 34.1 4.8 96 261-361 162-261 (415)
77 PF02310 B12-binding: B12 bind 34.2 1.5E+02 0.0033 24.5 6.6 54 263-317 2-57 (121)
78 TIGR02015 BchY chlorophyllide 33.6 58 0.0013 34.4 4.6 82 277-361 178-260 (422)
79 TIGR01862 N2-ase-Ialpha nitrog 33.4 60 0.0013 34.5 4.7 95 261-360 191-289 (443)
80 PRK00258 aroE shikimate 5-dehy 33.3 1.6E+02 0.0034 29.1 7.4 52 306-362 181-240 (278)
81 cd01965 Nitrogenase_MoFe_beta_ 33.1 58 0.0012 34.2 4.5 98 260-361 154-274 (428)
82 cd01976 Nitrogenase_MoFe_alpha 33.0 85 0.0018 33.1 5.8 96 261-361 172-271 (421)
83 PRK09860 putative alcohol dehy 32.3 1.5E+02 0.0032 30.8 7.4 57 263-319 33-97 (383)
84 cd08190 HOT Hydroxyacid-oxoaci 31.7 1.5E+02 0.0032 31.2 7.3 58 263-320 25-90 (414)
85 cd08192 Fe-ADH7 Iron-containin 31.4 1.6E+02 0.0036 30.1 7.5 57 263-319 26-90 (370)
86 cd03789 GT1_LPS_heptosyltransf 31.3 71 0.0015 31.0 4.6 42 298-341 186-227 (279)
87 TIGR01283 nifE nitrogenase mol 30.7 77 0.0017 33.7 5.0 95 261-360 197-295 (456)
88 PF10087 DUF2325: Uncharacteri 30.5 1.2E+02 0.0026 24.9 5.2 40 277-316 11-54 (97)
89 PF03193 DUF258: Protein of un 30.2 91 0.002 28.7 4.8 51 279-329 2-58 (161)
90 PF03575 Peptidase_S51: Peptid 29.9 1E+02 0.0022 27.5 5.0 37 279-315 3-40 (154)
91 PF08659 KR: KR domain; Inter 29.7 1.7E+02 0.0037 26.6 6.6 63 261-324 25-93 (181)
92 PF02423 OCD_Mu_crystall: Orni 29.7 1E+02 0.0022 31.1 5.5 68 263-340 155-226 (313)
93 TIGR00706 SppA_dom signal pept 29.5 3.5E+02 0.0075 25.4 8.8 89 276-369 13-124 (207)
94 cd00886 MogA_MoaB MogA_MoaB fa 29.0 1.2E+02 0.0026 27.1 5.3 58 273-330 17-81 (152)
95 TIGR00177 molyb_syn molybdenum 28.6 99 0.0021 27.4 4.6 51 274-324 25-80 (144)
96 cd03129 GAT1_Peptidase_E_like 28.4 1.8E+02 0.0038 27.3 6.6 60 260-319 28-89 (210)
97 PRK03094 hypothetical protein; 27.7 91 0.002 25.5 3.8 21 277-297 9-29 (80)
98 cd02072 Glm_B12_BD B12 binding 27.2 75 0.0016 28.2 3.5 38 280-317 18-56 (128)
99 TIGR01860 VNFD nitrogenase van 26.8 83 0.0018 33.7 4.4 96 261-361 201-300 (461)
100 cd03146 GAT1_Peptidase_E Type 26.6 1.4E+02 0.003 28.3 5.5 60 259-319 29-89 (212)
101 PRK15454 ethanol dehydrogenase 26.4 2E+02 0.0044 30.0 7.2 57 263-319 51-115 (395)
102 cd01974 Nitrogenase_MoFe_beta 26.4 80 0.0017 33.3 4.2 98 260-361 159-278 (435)
103 TIGR01282 nifD nitrogenase mol 26.0 1.2E+02 0.0025 32.6 5.4 95 261-360 207-305 (466)
104 PF03358 FMN_red: NADPH-depend 25.9 1.8E+02 0.0038 25.3 5.8 52 263-315 2-75 (152)
105 KOG4698 Uncharacterized conser 25.5 17 0.00038 38.9 -0.9 100 273-376 192-295 (475)
106 cd00758 MoCF_BD MoCF_BD: molyb 25.1 1.6E+02 0.0036 25.5 5.3 54 275-328 18-76 (133)
107 PF13528 Glyco_trans_1_3: Glyc 25.0 3.4E+02 0.0074 26.4 8.2 56 280-335 206-276 (318)
108 PF00731 AIRC: AIR carboxylase 24.7 2.1E+02 0.0045 26.1 6.0 77 262-340 1-86 (150)
109 cd08189 Fe-ADH5 Iron-containin 24.7 2.4E+02 0.0053 29.0 7.4 57 263-319 28-92 (374)
110 cd03466 Nitrogenase_NifN_2 Nit 24.4 83 0.0018 33.2 3.9 96 261-361 155-275 (429)
111 TIGR02638 lactal_redase lactal 24.3 2.4E+02 0.0052 29.1 7.2 57 263-319 31-95 (379)
112 cd02067 B12-binding B12 bindin 24.3 2.2E+02 0.0049 23.8 5.9 32 279-310 17-48 (119)
113 PRK02842 light-independent pro 24.3 1.2E+02 0.0027 31.9 5.2 94 261-361 166-262 (427)
114 PF01136 Peptidase_U32: Peptid 24.0 1.5E+02 0.0032 28.1 5.2 47 274-321 46-95 (233)
115 PF00670 AdoHcyase_NAD: S-aden 23.8 1.9E+02 0.004 26.8 5.6 32 306-337 74-109 (162)
116 COG1910 Periplasmic molybdate- 23.7 40 0.00086 32.7 1.2 66 263-332 99-173 (223)
117 TIGR01861 ANFD nitrogenase iro 23.6 1.1E+02 0.0023 33.4 4.6 95 262-361 203-301 (513)
118 cd01979 Pchlide_reductase_N Pc 23.6 1.3E+02 0.0028 31.3 5.1 95 260-360 154-251 (396)
119 cd08551 Fe-ADH iron-containing 23.4 2.8E+02 0.0061 28.3 7.5 57 263-319 25-89 (370)
120 PRK15438 erythronate-4-phospha 23.3 1.5E+02 0.0031 31.1 5.3 59 279-337 129-206 (378)
121 cd00887 MoeA MoeA family. Memb 22.7 2.8E+02 0.006 29.0 7.3 76 240-322 154-246 (394)
122 smart00115 CASc Caspase, inter 22.6 2.6E+02 0.0056 27.0 6.7 52 277-331 31-94 (241)
123 PRK12744 short chain dehydroge 22.6 1.9E+02 0.0042 27.2 5.8 58 263-322 34-99 (257)
124 cd08188 Fe-ADH4 Iron-containin 22.6 2.9E+02 0.0063 28.5 7.5 57 263-319 30-94 (377)
125 PF12689 Acid_PPase: Acid Phos 22.6 1.4E+02 0.0029 27.7 4.5 88 265-365 35-127 (169)
126 PRK07589 ornithine cyclodeamin 22.5 1.5E+02 0.0033 30.6 5.2 65 263-337 156-224 (346)
127 PRK12549 shikimate 5-dehydroge 22.4 2.6E+02 0.0057 27.7 6.8 87 263-362 153-246 (284)
128 PF03720 UDPG_MGDP_dh_C: UDP-g 22.4 1.6E+02 0.0034 24.6 4.5 21 279-299 20-40 (106)
129 PRK06823 ornithine cyclodeamin 22.4 1.6E+02 0.0035 29.8 5.4 65 263-337 155-221 (315)
130 cd08184 Fe-ADH3 Iron-containin 22.4 1.5E+02 0.0033 30.4 5.3 41 279-319 39-90 (347)
131 smart00852 MoCF_biosynth Proba 22.4 1.9E+02 0.0041 25.0 5.2 50 276-325 18-72 (135)
132 cd08194 Fe-ADH6 Iron-containin 22.3 2.8E+02 0.0062 28.5 7.3 57 263-319 25-89 (375)
133 PRK13337 putative lipid kinase 22.1 4.9E+02 0.011 25.8 8.7 77 265-341 6-92 (304)
134 cd07022 S49_Sppa_36K_type Sign 22.1 4.6E+02 0.0099 24.7 8.1 53 312-369 75-136 (214)
135 PF01075 Glyco_transf_9: Glyco 21.8 1.4E+02 0.003 28.1 4.6 41 298-340 171-211 (247)
136 cd02070 corrinoid_protein_B12- 21.8 3E+02 0.0064 25.7 6.7 58 260-317 81-139 (201)
137 PF01976 DUF116: Protein of un 21.5 1.7E+02 0.0037 26.8 4.8 39 278-317 75-113 (158)
138 PRK15456 universal stress prot 21.4 1.4E+02 0.0029 25.7 4.1 16 310-325 105-121 (142)
139 cd02069 methionine_synthase_B1 21.2 3E+02 0.0065 26.2 6.7 58 260-317 87-145 (213)
140 cd07409 MPP_CD73_N CD73 ecto-5 21.2 1.4E+02 0.0029 29.5 4.5 41 279-319 172-215 (281)
141 PRK09424 pntA NAD(P) transhydr 21.0 5.7E+02 0.012 28.0 9.5 93 271-369 12-119 (509)
142 PF00994 MoCF_biosynth: Probab 20.7 1.1E+02 0.0024 26.8 3.4 52 273-324 14-70 (144)
143 PRK13059 putative lipid kinase 20.6 5E+02 0.011 25.7 8.4 65 277-341 20-91 (295)
144 PRK08618 ornithine cyclodeamin 20.5 2.1E+02 0.0047 28.8 5.9 64 263-337 154-220 (325)
145 PRK12749 quinate/shikimate deh 20.4 5.1E+02 0.011 25.8 8.5 94 262-362 149-252 (288)
146 PRK05568 flavodoxin; Provision 20.4 2.1E+02 0.0046 24.6 5.1 49 261-315 3-53 (142)
147 cd08178 AAD_C C-terminal alcoh 20.3 2.7E+02 0.006 28.9 6.7 57 263-319 23-87 (398)
148 PF05368 NmrA: NmrA-like famil 20.3 3.7E+02 0.0079 25.0 7.1 50 263-319 24-73 (233)
149 PRK10964 ADP-heptose:LPS hepto 20.3 1.2E+02 0.0027 30.1 4.0 67 272-340 191-281 (322)
150 cd02410 archeal_CPSF_KH The ar 20.2 2E+02 0.0043 26.2 4.9 77 260-341 7-88 (145)
151 cd08191 HHD 6-hydroxyhexanoate 20.2 3.4E+02 0.0074 28.1 7.4 57 263-319 24-88 (386)
No 1
>KOG4698 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=9.7e-82 Score=642.82 Aligned_cols=424 Identities=37% Similarity=0.627 Sum_probs=384.9
Q ss_pred ChhhhhhhccchhhhhhccchhhHHHHHHHHHhhhheeeccccCCcc-ccc----------------------ccCCC-C
Q 037469 1 MYNYIFARSFKKREQKQLKFKWMALLCFSLIALSLCAMFKPYLGPLP-AAL----------------------TKKIE-P 56 (429)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----------------------~~~~~-~ 56 (429)
++++|+.++.++..++.+.+ +.+.+.++.+++.|++.+|++.+.| .+. ++..+ +
T Consensus 7 ~i~~i~~~~~~~~~~~~~~~--~~f~~~~~~vl~~~~v~kp~~l~~~~~~~~~~tg~~~~~~~~~~~~~~q~~~~~~e~~ 84 (475)
T KOG4698|consen 7 LILHIFLREDKKNLLGLLIY--GVFHSSLLSVLPKCVVVKPYLLLLPRFQPDLPTGSFEDELLPLSQLLRQPPGSALEDS 84 (475)
T ss_pred hhHHHHHHhhhhcCccceec--CcchhhhhhhcccceecCCeecccCccccCcccceeeccCCChhhcccCCCCcccCCc
Confidence 46889999999999999999 9999999999999999999964432 211 11112 2
Q ss_pred Ccccc-CCCCccceEeeCcEEeeCCceEEEEecC----CCCCcceEecCcccCCcccccccceEEEEee--ccccCCCce
Q 037469 57 AAVCS-VTKGSDFCEINNDIRIDGSSATVFIASS----LADQTEWIIRPYARKYDHVAMKRVNEWSVKS--AASLLQCNQ 129 (429)
Q Consensus 57 ~~~C~-~~~~~d~C~~~gdvr~~~~~~tv~~~~~----~~~~~~~~i~py~Rk~~~~~m~~v~e~~~~~--~~~~~~C~~ 129 (429)
.+.|+ ++.++|+|+++||+|+|+.++|++.... .+.+.+|+||||+||||..+|++|+|+++.. .+...+|++
T Consensus 85 ~~~C~~~g~~s~~c~~kg~~r~h~~~~~~~~~~~~~~~~s~~~~e~ikpy~rk~~~~vmp~vre~~l~~~~~~~~r~c~v 164 (475)
T KOG4698|consen 85 SFFCDRSGTRSDFCEMKGDVRTHPDSSTVLLTLGRLLTFSGRLVEKIKPYTRKGETWVMPEVRELNLLVRPGSEIRRCDV 164 (475)
T ss_pred eEEeeccccccchhhhcCccccCcchhhhhhhccchhhhccccchhcccccccccccccccccccceEEcCCcccceeee
Confidence 47788 6778999999999999999999987766 5678899999999999999999999999998 356789999
Q ss_pred eeeccEEEEecCCCcccchhhHHhhHHHHHHhhh--hcCCceEEEEeCCCcchhhhHHHHHHHhcCCCceecCCCCCcee
Q 037469 130 NHSVPAILFSNGGYAGNIFHDFSDIIIPLYINSR--QFNGQVQFVITNKQSWWINKYQNILKKLSRYDIIDIDNQDDIHC 207 (429)
Q Consensus 130 ~~~~Pavvfs~~gy~~N~fH~f~D~liPlf~t~~--~f~~~v~lvi~d~~p~w~~~y~~ll~~lS~~~vi~l~~d~~~~C 207 (429)
+|++|+++|++|||+||.||+|+|+++|||+|.+ .|+++|++++++.++||..||.+++++||+||+++++++..+||
T Consensus 165 ~~~~pa~vfs~Gg~tgn~yhdf~d~~ipL~it~~~~~~n~ev~~li~~~~~ww~~kf~Dvv~~lSn~~~v~~~~~~~Thc 244 (475)
T KOG4698|consen 165 NHEVPAIVFSTGGYTGNEYHDFNDGIIPLFITEAELRFNKEVQFLITETHSWWDMKFGDVVRQLSNYPVVDFDAELRTHC 244 (475)
T ss_pred ecccchheeecCCcchhhHHHHHhhhhhhhcccchhcccccEEEEEEEcchhhhhhHHHHHHhcCCCceEEecCCceEEE
Confidence 9999999999999999999999999999999999 78999999999999999999999999999999999999999999
Q ss_pred cCceeecccccCCcccccCCCCc----hhHHHHHHHHHHhcCCCccccccccCCCCCCCeEEEEecCCCccccCHHHHHH
Q 037469 208 FPRGIIGLKRHDRELNINSSESP----YSIKDFRQFIRSSYSLQKPAAIRLRDGEKKKPRLLIVSRKRTRAFTNAEEIAQ 283 (429)
Q Consensus 208 F~~~iVGl~~~~~~l~idp~~sp----~s~~~F~~fl~~~y~l~~~~~~~l~~~~~~~prlliisR~~~R~i~Ne~ev~~ 283 (429)
|.+++|||.. |.++.++|+..+ ++|.+|++++..+|+...+....-...+.++||+++++|.++|.|+||+||.+
T Consensus 245 F~~~~vgL~~-h~~y~v~~t~~~~~~~~s~~~fr~~l~~a~~~~i~~~~~t~~~~~kkpri~~lsR~~~r~Ilne~el~~ 323 (475)
T KOG4698|consen 245 FKEAIVGLVS-HFPYAVNPTQPPPNGTLSMLDFRNLLDKALSPRIPEANVTAPEPWKKPRITILSRAGSRAILNEDELPR 323 (475)
T ss_pred eeeeeeeeee-cccccccCCcCCCccccccccHHHHHHHHhcccccccccCCcChhhCCceEEEecccchhhhcchhhhH
Confidence 9999999999 799999887644 68999999999999864322111011246689999999999999999999999
Q ss_pred HHHhcCCEEEEeeCC-CCHHHHHHHhccCcEEEEechhhhhhhcccCCCcEEEEEeeCCCCccccCcchHhHHhhCCCeE
Q 037469 284 MGRRLGFNVVVAEAN-GNLSRFAETVNYCDVFLAVHGAAMTNMIFLPENAVFIQVVPFGGFAWLARTDYEEPAKAMKLRY 362 (429)
Q Consensus 284 ~l~~~Gf~V~v~e~~-~~~~q~~~l~~sadVlVGvHGAGLTN~lFl~pga~vIEi~P~g~~~~~~~~~y~~~A~~~Gl~Y 362 (429)
++++.||+|.+++++ +++..++++.+++|||+|||||||||++|+||++++|||.|+|+.+|.+..+|..+|+.|+++|
T Consensus 324 ~~~~~gf~v~~~~~~~t~v~~~~~i~~s~~vmiGvHGa~lth~lfl~~~~~~iqi~pcg~~~w~a~~a~~~p~k~~~l~y 403 (475)
T KOG4698|consen 324 MLEDIGFEVSVLRPDRTEVAKQLRITNSSDVMIGVHGAGLTHLLFLPPWAGVIQIYPCGDPGWAAKLARLRPAKYMTLEY 403 (475)
T ss_pred HHHhCCCceEEecccccchhhhhheeeccceeeeccCccceeEEecCCcceEEEEEECCCccchhhhhhccccceecccc
Confidence 999999999999997 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCCcccccCCCCCccccCCCccccccchhhh-hhccccceEEEehhhHHHHHHHHHHHh
Q 037469 363 LEYKIKLDESTLIQQYPLDHQVIRDPSSIGKQGWNAFR-SVYMVQQNVKVDLNRFRSTLLKALELL 427 (429)
Q Consensus 363 ~~y~i~~~Essl~~~y~~dh~v~~DP~~~~~~gw~~~~-~~yl~~Qdv~lD~~rF~~~L~~al~~L 427 (429)
.+|+|.++||+|.++|++||+++.||.++.+.||+.++ .+||..|+|++|+.||++.+.+|++..
T Consensus 404 ~~ykI~~~es~l~~~y~~d~~~v~dp~s~~~~~f~~~k~~~yl~~q~v~ld~nRf~~~~~~a~~~~ 469 (475)
T KOG4698|consen 404 AEYKIRAEESELYHKYGGDNTIVFDPISFQKKGFEETKKKVYLELQAVRLDINRFRKTLVKAYLKE 469 (475)
T ss_pred ceeEEeecccceeeeccCCCceecccceeccccceeeeeeeeEeEeeeehhhhhcccchhHHHHHH
Confidence 99999999999999999999999999999999999987 899999999999999999999998754
No 2
>PF04577 DUF563: Protein of unknown function (DUF563); InterPro: IPR007657 This is a family of uncharacterised glycosyltransferases belonging to glycosyltransferase family 61. Sequences are further processed into a mature form.; GO: 0016757 transferase activity, transferring glycosyl groups
Probab=99.96 E-value=7e-29 Score=231.22 Aligned_cols=197 Identities=25% Similarity=0.411 Sum_probs=149.9
Q ss_pred ccchhhHHhhHHHHHHhhhhc--CCceEEEEeC--CCcchhhhHHHHHHHhcC-CCceecCCCCCceecCceeecccccC
Q 037469 145 GNIFHDFSDIIIPLYINSRQF--NGQVQFVITN--KQSWWINKYQNILKKLSR-YDIIDIDNQDDIHCFPRGIIGLKRHD 219 (429)
Q Consensus 145 ~N~fH~f~D~liPlf~t~~~f--~~~v~lvi~d--~~p~w~~~y~~ll~~lS~-~~vi~l~~d~~~~CF~~~iVGl~~~~ 219 (429)
.||+|++.|+| |.+.++++. +.+..+++.+ ..+. -+.++|+.|+. .+.+.+ ..++..||++++++... .
T Consensus 1 ~~~gH~l~d~l-~~l~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~l~~lg~~~~~i~~-~~~~~~~~~~l~~~~~~-~ 74 (206)
T PF04577_consen 1 NNFGHFLIDFL-PRLWYLPQYIPDSDIIILVPDDFDNPP---FIREILELLGIPENRIKI-DSDEPVCFERLIVPSPP-Y 74 (206)
T ss_pred CCCcEEHHHHH-HHHHHHHHHCCCCCeEEEEcCCccccH---HHHHHHHHcCCCccEEEE-cCCCeEEECEEEEeCCC-c
Confidence 48899999999 555777764 3445566665 3222 24478877764 223322 23478899999887644 1
Q ss_pred CcccccCCCCchhHHHHHHHHHHhcCCCccccccccCCCCCCCeEEEEec--CCCccccCHHHHHHHHHhcCCEEEEeeC
Q 037469 220 RELNINSSESPYSIKDFRQFIRSSYSLQKPAAIRLRDGEKKKPRLLIVSR--KRTRAFTNAEEIAQMGRRLGFNVVVAEA 297 (429)
Q Consensus 220 ~~l~idp~~sp~s~~~F~~fl~~~y~l~~~~~~~l~~~~~~~prlliisR--~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~ 297 (429)
. ...-.+.....|++++++.++++. ..+||++|++| ++.|+|.||+|+++.+++.||+++..+
T Consensus 75 ---~-~~~~~~~~~~~~~~~~~~~~~~~~----------~~~p~i~~i~R~~~~~R~i~Ne~el~~~l~~~~~~~v~~~- 139 (206)
T PF04577_consen 75 ---S-PSDFNPSFFPALRDRIRRKLNLPP----------PKRPRILYISRRKSGSRRILNEDELLEILKKYGFEVVDPE- 139 (206)
T ss_pred ---c-ccCcCchHHHHHHHHHHHHhCCcc----------cCCCeEEEEecCCCCCCcCcCHHHHHHHHhhCCeEEEeCC-
Confidence 1 111122334589999999998764 24679999999 578999999999999999998877544
Q ss_pred CCCHHHHHHHhccCcEEEEechhhhhhhcccCCCcEEEEEeeCCCCccccCcchHhHHhhCCCeEEEEE
Q 037469 298 NGNLSRFAETVNYCDVFLAVHGAAMTNMIFLPENAVFIQVVPFGGFAWLARTDYEEPAKAMKLRYLEYK 366 (429)
Q Consensus 298 ~~~~~q~~~l~~sadVlVGvHGAGLTN~lFl~pga~vIEi~P~g~~~~~~~~~y~~~A~~~Gl~Y~~y~ 366 (429)
+++++||++++++|||+||+|||||+|++|||||+.||||+|... ...+|..+|..+|++|..+.
T Consensus 140 ~~s~~eqv~~~~~a~viig~hGs~l~n~~F~~~~s~viei~~~~~----~~~~~~~~a~~~~~~y~~v~ 204 (206)
T PF04577_consen 140 DLSFEEQVKLFASAKVIIGPHGSALTNLLFMPPGSTVIEIFPPNY----YNRHYRNLAQALGIHYYAVY 204 (206)
T ss_pred CCCHHHHHHHhcCCCEEEecCchHhheeeecCCCCEEEEEeCCCC----CCHHHHHHHHHcCCeEEEEe
Confidence 799999999999999999999999999999999999999987763 34559999999999999875
No 3
>COG4421 Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism]
Probab=99.78 E-value=4.1e-18 Score=167.79 Aligned_cols=272 Identities=17% Similarity=0.209 Sum_probs=161.4
Q ss_pred CCcccc---CCCCccceEeeCcEEeeCCceEEEEecCCCCCcceEecCcccCC-cccccccceEEEEeeccccCCCceee
Q 037469 56 PAAVCS---VTKGSDFCEINNDIRIDGSSATVFIASSLADQTEWIIRPYARKY-DHVAMKRVNEWSVKSAASLLQCNQNH 131 (429)
Q Consensus 56 ~~~~C~---~~~~~d~C~~~gdvr~~~~~~tv~~~~~~~~~~~~~i~py~Rk~-~~~~m~~v~e~~~~~~~~~~~C~~~~ 131 (429)
+..+|- .+.++-+|-+.=-+-+.+...+..+-.+. ..+.+--+|.--+ -+.. .-.++...++| +-
T Consensus 51 ~p~v~~~g~~~a~~v~~~~~~~vvvg~~gq~~~l~d~~--~~~~~ad~~~~~h~~~~~-----~~Rl~~~edAp----~L 119 (368)
T COG4421 51 PPSVCEPGPFYAASVWQPPCFGVVVGLYGQTLLLPDSF--AHETSADLHAAPHDVKTG-----GYRLKRPEDAP----RL 119 (368)
T ss_pred CCccCCCcccccccccccccceEEEecCcceecCcHHh--hhccCCChhhCccccccC-----ceeecCCcCCC----cC
Confidence 445784 45678888887666666554433332221 1111111111111 0000 01122233444 33
Q ss_pred eccEEEEecCCCcccchhhHHhhHHHHHHhhhhcC--CceEEEEeCCCcchhhhHHHHHHHhc-CCCceecCCCCCceec
Q 037469 132 SVPAILFSNGGYAGNIFHDFSDIIIPLYINSRQFN--GQVQFVITNKQSWWINKYQNILKKLS-RYDIIDIDNQDDIHCF 208 (429)
Q Consensus 132 ~~Pavvfs~~gy~~N~fH~f~D~liPlf~t~~~f~--~~v~lvi~d~~p~w~~~y~~ll~~lS-~~~vi~l~~d~~~~CF 208 (429)
+. ..||...|++.||-|++.|.| |..+.++..+ .+-.++.....+| -.+++..+. +.++|.- ...+|-
T Consensus 120 ~r-~~v~~~~~~~~~Yghflle~L-p~l~~i~~l~i~~~~pLl~P~~~~w----qadll~m~~~~~~ii~~---~p~V~~ 190 (368)
T COG4421 120 PR-GAVFKEWGFSFEYGHFLLENL-PYLWQIKSLGILSDPPLLYPRLTEW----QADLLFMAGPDCPIIAT---APAVPL 190 (368)
T ss_pred CC-cceecccccccccchhHHhhh-HHHHHHhhhcccccCcccCCcchHH----HHhHHhhcCCCCceeec---ccceee
Confidence 33 345555566899999999999 6666555432 2223444444444 236666554 5555554 333444
Q ss_pred CceeecccccCCcccccCCCCchhHHHHHHHHHHhcCCCccccccccCCCCCCCeEEEEecC--CCccccCHHHHHHHHH
Q 037469 209 PRGIIGLKRHDRELNINSSESPYSIKDFRQFIRSSYSLQKPAAIRLRDGEKKKPRLLIVSRK--RTRAFTNAEEIAQMGR 286 (429)
Q Consensus 209 ~~~iVGl~~~~~~l~idp~~sp~s~~~F~~fl~~~y~l~~~~~~~l~~~~~~~prlliisR~--~~R~i~Ne~ev~~~l~ 286 (429)
..++.. ++.+|+ .+..+++..- .+...+ .++...++.+|+||+ ..|+++||+|+.+.++
T Consensus 191 ~~avl~-----------~~~s~~---~~ha~l~~~~--eR~~~~---~~~~~~adkiYVSR~~qS~R~lvnE~evE~~~q 251 (368)
T COG4421 191 GPAVLP-----------VSGSPR---YTHALLAWKD--ERVIAI---KGKGKVADKIYVSRKAQSMRVLVNEEEVERLLQ 251 (368)
T ss_pred cccccC-----------CCCCch---hhhHHHHHHh--hhhhcc---cCCCCCcceEEEechhhHHHHhhCHHHHHHHHH
Confidence 332221 122231 2223333221 111111 134667889999997 4799999999999999
Q ss_pred hcCCEEEEeeCCCCHHHHHHHhccCcEEEEechhhhhhhcccCCCcEEEEEeeCCCCccccCcchHhHHhhCCCeEEEEE
Q 037469 287 RLGFNVVVAEANGNLSRFAETVNYCDVFLAVHGAAMTNMIFLPENAVFIQVVPFGGFAWLARTDYEEPAKAMKLRYLEYK 366 (429)
Q Consensus 287 ~~Gf~V~v~e~~~~~~q~~~l~~sadVlVGvHGAGLTN~lFl~pga~vIEi~P~g~~~~~~~~~y~~~A~~~Gl~Y~~y~ 366 (429)
+.||.++..| ++...||+++|+.|.|+||.||+||.|.+|+++|+.||||-|-.. ..+.++-..+.-|+..|.-+.
T Consensus 252 ~~G~~IVrPE-tl~~~eQ~~LFr~AkvIvG~~GS~laNavF~~~~~kvvEI~~~~~---~~~s~~vr~~~~~~g~~~~~~ 327 (368)
T COG4421 252 RSGLTIVRPE-TLGPREQARLFRKAKVIVGPHGSGLANAVFAAPGCKVVEIQPGTT---NFRSFWVRMANYMSGDYYPGY 327 (368)
T ss_pred hcCcEEEech-hcCHHHHHHHhhcceEEeccccchhhhheecCCCceEEEeccCCC---cchHHHHHHhhhcccceeecc
Confidence 9999999777 588999999999999999999999999999999999999999331 135556555555555555555
Q ss_pred eecC
Q 037469 367 IKLD 370 (429)
Q Consensus 367 i~~~ 370 (429)
+...
T Consensus 328 ve~q 331 (368)
T COG4421 328 VEHQ 331 (368)
T ss_pred cccC
Confidence 4443
No 4
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=89.34 E-value=2.7 Score=37.72 Aligned_cols=69 Identities=17% Similarity=0.180 Sum_probs=50.6
Q ss_pred CCeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeCC-CCHHHHHHHhccCcEEEEechhh-hhhhcccCCCcEEEE
Q 037469 261 KPRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEAN-GNLSRFAETVNYCDVFLAVHGAA-MTNMIFLPENAVFIQ 336 (429)
Q Consensus 261 ~prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~~-~~~~q~~~l~~sadVlVGvHGAG-LTN~lFl~pga~vIE 336 (429)
.-+++++.|+. ..-..+...|.+.|.+|.+.+.+ -++++ .++.|||+|..-|.. +-..=|++||++|+-
T Consensus 28 gk~v~VvGrs~----~vG~pla~lL~~~gatV~~~~~~t~~l~~---~v~~ADIVvsAtg~~~~i~~~~ikpGa~Vid 98 (140)
T cd05212 28 GKKVLVVGRSG----IVGAPLQCLLQRDGATVYSCDWKTIQLQS---KVHDADVVVVGSPKPEKVPTEWIKPGATVIN 98 (140)
T ss_pred CCEEEEECCCc----hHHHHHHHHHHHCCCEEEEeCCCCcCHHH---HHhhCCEEEEecCCCCccCHHHcCCCCEEEE
Confidence 44777888764 34467788888889999988752 34554 466899999988865 344558999999984
No 5
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=86.66 E-value=3.5 Score=37.88 Aligned_cols=69 Identities=19% Similarity=0.340 Sum_probs=45.3
Q ss_pred CeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeCC-CCHHHHHHHhccCcEEEEech-hhhhhhcccCCCcEEEEE
Q 037469 262 PRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEAN-GNLSRFAETVNYCDVFLAVHG-AAMTNMIFLPENAVFIQV 337 (429)
Q Consensus 262 prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~~-~~~~q~~~l~~sadVlVGvHG-AGLTN~lFl~pga~vIEi 337 (429)
-++++|.|.. .=..-+..+|.+.|..|.+...+ .+++++ .++|||+|..-| +++-..=|.+||++||-+
T Consensus 37 k~v~VvGrs~----~VG~Pla~lL~~~~atVt~~h~~T~~l~~~---~~~ADIVVsa~G~~~~i~~~~ik~gavVIDv 107 (160)
T PF02882_consen 37 KKVVVVGRSN----IVGKPLAMLLLNKGATVTICHSKTKNLQEI---TRRADIVVSAVGKPNLIKADWIKPGAVVIDV 107 (160)
T ss_dssp -EEEEE-TTT----TTHHHHHHHHHHTT-EEEEE-TTSSSHHHH---HTTSSEEEE-SSSTT-B-GGGS-TTEEEEE-
T ss_pred CEEEEECCcC----CCChHHHHHHHhCCCeEEeccCCCCcccce---eeeccEEeeeeccccccccccccCCcEEEec
Confidence 3788888873 12245777888889999987763 345554 468999998887 678888899999999976
No 6
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.32 E-value=4.3 Score=40.66 Aligned_cols=72 Identities=15% Similarity=0.222 Sum_probs=52.8
Q ss_pred CCeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeCCCCHHHHHHHhccCcEEEEech-hhhhhhcccCCCcEEEEEe
Q 037469 261 KPRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEANGNLSRFAETVNYCDVFLAVHG-AAMTNMIFLPENAVFIQVV 338 (429)
Q Consensus 261 ~prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~~~~~~q~~~l~~sadVlVGvHG-AGLTN~lFl~pga~vIEi~ 338 (429)
.-+++++.|... --.-+...+...|..|.+...++ ..+.....+||++|+.=| +++-..=+++||++||.+-
T Consensus 152 Gk~V~ViGrs~~----vGrpla~lL~~~~atVtv~hs~t--~~L~~~~~~ADIvI~Avgk~~lv~~~~vk~GavVIDVg 224 (279)
T PRK14178 152 GKRAVVVGRSID----VGRPMAALLLNADATVTICHSKT--ENLKAELRQADILVSAAGKAGFITPDMVKPGATVIDVG 224 (279)
T ss_pred CCEEEEECCCcc----ccHHHHHHHHhCCCeeEEEecCh--hHHHHHHhhCCEEEECCCcccccCHHHcCCCcEEEEee
Confidence 347888888742 12456667778899988776522 334445668999999999 8887777889999999985
No 7
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.01 E-value=12 Score=37.83 Aligned_cols=70 Identities=19% Similarity=0.267 Sum_probs=51.1
Q ss_pred CCeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeC-CCCHHHHHHHhccCcEEEEech-hhhhhhcccCCCcEEEEE
Q 037469 261 KPRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEA-NGNLSRFAETVNYCDVFLAVHG-AAMTNMIFLPENAVFIQV 337 (429)
Q Consensus 261 ~prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~-~~~~~q~~~l~~sadVlVGvHG-AGLTN~lFl~pga~vIEi 337 (429)
.-++++|.|.+. --.-++..|.+.|++|.+... +.++++. .+.|||+|.+=| +++-...|++||++||.+
T Consensus 158 Gk~V~viGrs~~----mG~PmA~~L~~~g~tVtv~~~rT~~l~e~---~~~ADIVIsavg~~~~v~~~~lk~GavVIDv 229 (296)
T PRK14188 158 GLNAVVIGRSNL----VGKPMAQLLLAANATVTIAHSRTRDLPAV---CRRADILVAAVGRPEMVKGDWIKPGATVIDV 229 (296)
T ss_pred CCEEEEEcCCcc----hHHHHHHHHHhCCCEEEEECCCCCCHHHH---HhcCCEEEEecCChhhcchheecCCCEEEEc
Confidence 347788888742 224567777788999999853 4455544 458899887766 567788899999999986
No 8
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=77.56 E-value=7.3 Score=39.98 Aligned_cols=97 Identities=10% Similarity=0.140 Sum_probs=71.3
Q ss_pred CCCCeEEEEecCC-CccccCHHHHHHHHHhcCCEEEEeeC-CCCHHHHHHHhccCcEEEEe---chhhhhhhcccCCCcE
Q 037469 259 KKKPRLLIVSRKR-TRAFTNAEEIAQMGRRLGFNVVVAEA-NGNLSRFAETVNYCDVFLAV---HGAAMTNMIFLPENAV 333 (429)
Q Consensus 259 ~~~prlliisR~~-~R~i~Ne~ev~~~l~~~Gf~V~v~e~-~~~~~q~~~l~~sadVlVGv---HGAGLTN~lFl~pga~ 333 (429)
..++.+-+|.-.. .. -|..|+.+.|++.|++|+.+-+ +.+++++.++- +|++-|.+ +|..++..+=-+-|.-
T Consensus 150 ~~~~~vNlig~~~~~~--~d~~el~~ll~~~G~~v~~~~~~~~s~~~i~~~~-~A~~nlv~~~~~g~~~a~~l~~~~g~p 226 (399)
T cd00316 150 TEPGSVNLIGGYNLGG--GDLRELKRLLEEMGIRVNALFDGGTTVEELRELG-NAKLNLVLCRESGLYLARYLEEKYGIP 226 (399)
T ss_pred CCCCcEEEECCCCCch--hhHHHHHHHHHHcCCcEEEEcCCCCCHHHHHhhc-cCcEEEEecHhHHHHHHHHHHHHhCCC
Confidence 3456666776542 12 5889999999999999987665 58999998865 66776666 5677777775566777
Q ss_pred EEEEeeCCCCccccCcchHhHHhhCCC
Q 037469 334 FIQVVPFGGFAWLARTDYEEPAKAMKL 360 (429)
Q Consensus 334 vIEi~P~g~~~~~~~~~y~~~A~~~Gl 360 (429)
.+...|+| .+- ...+++.+|+.+|+
T Consensus 227 ~~~~~p~G-~~~-t~~~l~~i~~~~g~ 251 (399)
T cd00316 227 YILINPIG-LEA-TDAFLRKLAELFGI 251 (399)
T ss_pred eEEeCCcC-HHH-HHHHHHHHHHHhCC
Confidence 77777988 432 35788999999986
No 9
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=76.79 E-value=17 Score=36.90 Aligned_cols=70 Identities=17% Similarity=0.272 Sum_probs=50.9
Q ss_pred CCeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeC-CCCHHHHHHHhccCcEEEEech-hhhhhhcccCCCcEEEEE
Q 037469 261 KPRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEA-NGNLSRFAETVNYCDVFLAVHG-AAMTNMIFLPENAVFIQV 337 (429)
Q Consensus 261 ~prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~-~~~~~q~~~l~~sadVlVGvHG-AGLTN~lFl~pga~vIEi 337 (429)
.-++++|.|.+. =-.-+...|.+.|++|.+..- +.++++. .++|||+|.+=| +++-...|++||++||.+
T Consensus 159 Gk~V~vIG~s~i----vG~PmA~~L~~~gatVtv~~~~t~~l~e~---~~~ADIVIsavg~~~~v~~~~ik~GaiVIDv 230 (301)
T PRK14194 159 GKHAVVIGRSNI----VGKPMAALLLQAHCSVTVVHSRSTDAKAL---CRQADIVVAAVGRPRLIDADWLKPGAVVIDV 230 (301)
T ss_pred CCEEEEECCCCc----cHHHHHHHHHHCCCEEEEECCCCCCHHHH---HhcCCEEEEecCChhcccHhhccCCcEEEEe
Confidence 347888998631 113466777888999998864 3345544 568999887766 567778899999999997
No 10
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=74.25 E-value=23 Score=35.65 Aligned_cols=70 Identities=20% Similarity=0.321 Sum_probs=50.1
Q ss_pred CCeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeC-CCCHHHHHHHhccCcEEEEech-hhhhhhcccCCCcEEEEE
Q 037469 261 KPRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEA-NGNLSRFAETVNYCDVFLAVHG-AAMTNMIFLPENAVFIQV 337 (429)
Q Consensus 261 ~prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~-~~~~~q~~~l~~sadVlVGvHG-AGLTN~lFl~pga~vIEi 337 (429)
.-++++|.|.+. + -.-+...|.+.|..|.+... ..++++ ..+.|||+|.+=| +++-...|++||++||.+
T Consensus 158 Gk~v~vIG~S~i---v-G~Pla~lL~~~gatVtv~~s~t~~l~~---~~~~ADIVI~avg~~~~v~~~~ik~GavVIDv 229 (284)
T PRK14179 158 GKHAVVIGRSNI---V-GKPMAQLLLDKNATVTLTHSRTRNLAE---VARKADILVVAIGRGHFVTKEFVKEGAVVIDV 229 (284)
T ss_pred CCEEEEECCCCc---C-cHHHHHHHHHCCCEEEEECCCCCCHHH---HHhhCCEEEEecCccccCCHHHccCCcEEEEe
Confidence 347888998631 1 13466667778999998754 233444 4568999888776 567778899999999997
No 11
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=71.48 E-value=24 Score=35.49 Aligned_cols=71 Identities=18% Similarity=0.277 Sum_probs=49.6
Q ss_pred CCeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeCCCCHHHHHHHhccCcEEEEech-hhhhhhcccCCCcEEEEE
Q 037469 261 KPRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEANGNLSRFAETVNYCDVFLAVHG-AAMTNMIFLPENAVFIQV 337 (429)
Q Consensus 261 ~prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~~~~~~q~~~l~~sadVlVGvHG-AGLTN~lFl~pga~vIEi 337 (429)
.-++++|.|... =-.-+..+|.+.|..|.+....+ .++....++|||+|+.=| +++-..=|.+||++||-+
T Consensus 158 Gk~vvViGrS~i----VG~Pla~lL~~~~atVt~chs~t--~~l~~~~~~ADIvI~AvG~p~~i~~~~ik~gavVIDv 229 (284)
T PRK14190 158 GKHVVVVGRSNI----VGKPVGQLLLNENATVTYCHSKT--KNLAELTKQADILIVAVGKPKLITADMVKEGAVVIDV 229 (284)
T ss_pred CCEEEEECCCCc----cHHHHHHHHHHCCCEEEEEeCCc--hhHHHHHHhCCEEEEecCCCCcCCHHHcCCCCEEEEe
Confidence 347888988741 11345666777899998876522 233345679999988766 566667778999999997
No 12
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=68.51 E-value=11 Score=34.84 Aligned_cols=75 Identities=16% Similarity=0.182 Sum_probs=51.5
Q ss_pred CCCeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeCCCCHHHHHHHhccCcEEEEechhhh-hhhcccCCCcEEEEEe
Q 037469 260 KKPRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEANGNLSRFAETVNYCDVFLAVHGAAM-TNMIFLPENAVFIQVV 338 (429)
Q Consensus 260 ~~prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~~~~~~q~~~l~~sadVlVGvHGAGL-TN~lFl~pga~vIEi~ 338 (429)
..-++++|..... =...+++.|.+.|.+|.+..- +.++....++.|||+|+..|+.- -..=.+++|.++|.+-
T Consensus 43 ~gk~vlViG~G~~----~G~~~a~~L~~~g~~V~v~~r--~~~~l~~~l~~aDiVIsat~~~~ii~~~~~~~~~viIDla 116 (168)
T cd01080 43 AGKKVVVVGRSNI----VGKPLAALLLNRNATVTVCHS--KTKNLKEHTKQADIVIVAVGKPGLVKGDMVKPGAVVIDVG 116 (168)
T ss_pred CCCEEEEECCcHH----HHHHHHHHHhhCCCEEEEEEC--CchhHHHHHhhCCEEEEcCCCCceecHHHccCCeEEEEcc
Confidence 4457788887521 012367778888998877774 45677778889999999999952 2222347788988884
Q ss_pred -eC
Q 037469 339 -PF 340 (429)
Q Consensus 339 -P~ 340 (429)
|.
T Consensus 117 ~pr 119 (168)
T cd01080 117 INR 119 (168)
T ss_pred CCC
Confidence 54
No 13
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=68.25 E-value=7.7 Score=40.01 Aligned_cols=97 Identities=15% Similarity=0.171 Sum_probs=71.6
Q ss_pred CCCCeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeC-CCCHHHHHHHhccCcEEEEechhhhh-hhcccCC--CcEE
Q 037469 259 KKKPRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEA-NGNLSRFAETVNYCDVFLAVHGAAMT-NMIFLPE--NAVF 334 (429)
Q Consensus 259 ~~~prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~-~~~~~q~~~l~~sadVlVGvHGAGLT-N~lFl~p--ga~v 334 (429)
.+++.+-||....-- .-|..|+.+.|++.|++|...-+ ..+++++.++- +|++-|.++..+.. =.=+|.. |.-.
T Consensus 142 ~~~~~VNiiG~~~~~-~~d~~el~~lL~~~Gi~v~~~~~~~~t~~e~~~~~-~A~lniv~~~~~~~~~a~~L~e~~giP~ 219 (398)
T PF00148_consen 142 KKPRSVNIIGGSPLG-PGDLEELKRLLEELGIEVNAVFPGGTTLEEIRKAP-EAALNIVLCPEGGPYAAEWLEERFGIPY 219 (398)
T ss_dssp TSSSEEEEEEESTBT-HHHHHHHHHHHHHTTEEEEEEEETTBCHHHHHHGG-GSSEEEESSCCHHHHHHHHHHHHHT-EE
T ss_pred CCCCceEEecCcCCC-cccHHHHHHHHHHCCCceEEEeCCCCCHHHHHhCC-cCcEEEEeccchhhHHHHHHHHHhCCCe
Confidence 445577777765211 27889999999999999887664 78999998755 78999999988665 4455555 7777
Q ss_pred EE-EeeCCCCccccCcchHhHHhhCC
Q 037469 335 IQ-VVPFGGFAWLARTDYEEPAKAMK 359 (429)
Q Consensus 335 IE-i~P~g~~~~~~~~~y~~~A~~~G 359 (429)
+. -.|+| .+. ...+|+.+|+.+|
T Consensus 220 ~~~~~p~G-~~~-t~~~l~~i~~~lg 243 (398)
T PF00148_consen 220 LYFPSPYG-IEG-TDAWLRAIAEALG 243 (398)
T ss_dssp EEEC-SBS-HHH-HHHHHHHHHHHHT
T ss_pred eecccccc-HHH-HHHHHHHHHHHhC
Confidence 77 57888 443 3678999999999
No 14
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=68.06 E-value=33 Score=34.56 Aligned_cols=70 Identities=19% Similarity=0.342 Sum_probs=50.1
Q ss_pred CCeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeC-CCCHHHHHHHhccCcEEEEech-hhhhhhcccCCCcEEEEE
Q 037469 261 KPRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEA-NGNLSRFAETVNYCDVFLAVHG-AAMTNMIFLPENAVFIQV 337 (429)
Q Consensus 261 ~prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~-~~~~~q~~~l~~sadVlVGvHG-AGLTN~lFl~pga~vIEi 337 (429)
.-++++|.|... + -.-+..+|.+.|-.|.+... +-++++. .++|||+|..=| +++-..=|.+||++||-+
T Consensus 157 Gk~vvVvGrS~i---V-GkPla~lL~~~~atVtichs~T~~l~~~---~~~ADIvI~AvG~~~~i~~~~vk~GavVIDv 228 (284)
T PRK14170 157 GKRAVVIGRSNI---V-GKPVAQLLLNENATVTIAHSRTKDLPQV---AKEADILVVATGLAKFVKKDYIKPGAIVIDV 228 (284)
T ss_pred CCEEEEECCCCc---c-hHHHHHHHHHCCCEEEEeCCCCCCHHHH---HhhCCEEEEecCCcCccCHHHcCCCCEEEEc
Confidence 347888998741 1 13356667777989988776 3345544 568999988777 677777788999999986
No 15
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=67.91 E-value=30 Score=34.87 Aligned_cols=70 Identities=16% Similarity=0.266 Sum_probs=50.1
Q ss_pred CCeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeC-CCCHHHHHHHhccCcEEEEech-hhhhhhcccCCCcEEEEE
Q 037469 261 KPRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEA-NGNLSRFAETVNYCDVFLAVHG-AAMTNMIFLPENAVFIQV 337 (429)
Q Consensus 261 ~prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~-~~~~~q~~~l~~sadVlVGvHG-AGLTN~lFl~pga~vIEi 337 (429)
.-++++|.|.+. =-.-+..+|.+.|..|.+... +.+++ ..+++||++|..=| +++-+.=|++||++||-+
T Consensus 158 Gk~vvViGrs~i----VGkPla~lL~~~~atVt~~hs~t~~l~---~~~~~ADIVV~avG~~~~i~~~~ik~gavVIDV 229 (285)
T PRK14189 158 GAHAVVIGRSNI----VGKPMAMLLLQAGATVTICHSKTRDLA---AHTRQADIVVAAVGKRNVLTADMVKPGATVIDV 229 (285)
T ss_pred CCEEEEECCCCc----cHHHHHHHHHHCCCEEEEecCCCCCHH---HHhhhCCEEEEcCCCcCccCHHHcCCCCEEEEc
Confidence 447888888742 124567778888999987664 23344 45668999988777 466666789999999886
No 16
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=67.87 E-value=30 Score=34.81 Aligned_cols=72 Identities=13% Similarity=0.170 Sum_probs=49.2
Q ss_pred CCeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeCCCCHHHHHHHhccCcEEEEech-hhhhhhcccCCCcEEEEEe
Q 037469 261 KPRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEANGNLSRFAETVNYCDVFLAVHG-AAMTNMIFLPENAVFIQVV 338 (429)
Q Consensus 261 ~prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~~~~~~q~~~l~~sadVlVGvHG-AGLTN~lFl~pga~vIEi~ 338 (429)
.-++++|.|... + -.-+..+|.+.|..|.+....+ .++....+.|||+|+.=| +++-..=|.+||++||.+=
T Consensus 157 Gk~vvVvGrs~~---V-G~Pla~lL~~~gAtVtv~hs~t--~~l~~~~~~ADIvV~AvG~p~~i~~~~vk~GavVIDvG 229 (285)
T PRK14191 157 GKDVVIIGASNI---V-GKPLAMLMLNAGASVSVCHILT--KDLSFYTQNADIVCVGVGKPDLIKASMVKKGAVVVDIG 229 (285)
T ss_pred CCEEEEECCCch---h-HHHHHHHHHHCCCEEEEEeCCc--HHHHHHHHhCCEEEEecCCCCcCCHHHcCCCcEEEEee
Confidence 347888988731 1 1235566777899998876421 334456779999888766 5566666779999999974
No 17
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=67.34 E-value=16 Score=38.56 Aligned_cols=99 Identities=13% Similarity=0.085 Sum_probs=67.7
Q ss_pred CCCeEEEEecCC---CccccCHHHHHHHHHhcCCEEEEeeC-CCCHHHHHHHhccCcEEEEec---hhhhhhhcccCCCc
Q 037469 260 KKPRLLIVSRKR---TRAFTNAEEIAQMGRRLGFNVVVAEA-NGNLSRFAETVNYCDVFLAVH---GAAMTNMIFLPENA 332 (429)
Q Consensus 260 ~~prlliisR~~---~R~i~Ne~ev~~~l~~~Gf~V~v~e~-~~~~~q~~~l~~sadVlVGvH---GAGLTN~lFl~pga 332 (429)
.++++-||.... .----|..|+.+.|++.|+++..+-+ +.+++++.++- +|..-|.++ |...+..|.=+=|.
T Consensus 154 ~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~~~~~~~~~~ei~~~~-~A~~niv~~~~~g~~~a~~L~~~~gi 232 (427)
T cd01971 154 EPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNILFGPESNGEELRSIP-KAQFNLVLSPWVGLEFAQHLEEKYGQ 232 (427)
T ss_pred CCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEEEECCCCCHHHHHhcc-cCcEEEEEcHhhHHHHHHHHHHHhCC
Confidence 455666775431 11225789999999999999976654 67899988755 667544444 44566666656677
Q ss_pred EEEEE--eeCCCCccccCcchHhHHhhCCCe
Q 037469 333 VFIQV--VPFGGFAWLARTDYEEPAKAMKLR 361 (429)
Q Consensus 333 ~vIEi--~P~g~~~~~~~~~y~~~A~~~Gl~ 361 (429)
-.+.. +|+| ++- ...++..+++..|+.
T Consensus 233 P~i~~~~~P~G-~~~-t~~~l~~i~~~~g~~ 261 (427)
T cd01971 233 PYIHSPTLPIG-AKA-TAEFLRQVAKFAGIE 261 (427)
T ss_pred ceEecCCCccC-HHH-HHHHHHHHHHHhCCC
Confidence 77776 7888 332 356788899888864
No 18
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=65.96 E-value=9.4 Score=37.20 Aligned_cols=48 Identities=19% Similarity=0.367 Sum_probs=41.9
Q ss_pred eEEEEecCC------CccccCHHHHHHHHHhcCCEEEEeeCCCCHHHHHHHhccC
Q 037469 263 RLLIVSRKR------TRAFTNAEEIAQMGRRLGFNVVVAEANGNLSRFAETVNYC 311 (429)
Q Consensus 263 rlliisR~~------~R~i~Ne~ev~~~l~~~Gf~V~v~e~~~~~~q~~~l~~sa 311 (429)
-+.||+|++ +..|.|.+.+.+..++.|++|+.++ ..+++++...+.++
T Consensus 173 LiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evd-G~d~~~i~~a~~~~ 226 (243)
T COG3959 173 LIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVD-GHDIEEIVEALEKA 226 (243)
T ss_pred EEEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEEc-CcCHHHHHHHHHhh
Confidence 567899985 6999999999999999999999888 47899998887765
No 19
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=65.37 E-value=37 Score=35.16 Aligned_cols=69 Identities=17% Similarity=0.269 Sum_probs=49.9
Q ss_pred CeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeC-CCCHHHHHHHhccCcEEEEech-hhhhhhcccCCCcEEEEE
Q 037469 262 PRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEA-NGNLSRFAETVNYCDVFLAVHG-AAMTNMIFLPENAVFIQV 337 (429)
Q Consensus 262 prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~-~~~~~q~~~l~~sadVlVGvHG-AGLTN~lFl~pga~vIEi 337 (429)
-++++|.|.. ++. .-+..+|.+.|-.|.+... +.++++ ..++|||+|..=| +++-..=|.+||++||-+
T Consensus 215 K~vvVIGRS~---iVG-kPla~LL~~~~ATVTicHs~T~nl~~---~~~~ADIvIsAvGkp~~v~~d~vk~GavVIDV 285 (345)
T PLN02897 215 KNAVVIGRSN---IVG-LPMSLLLQRHDATVSTVHAFTKDPEQ---ITRKADIVIAAAGIPNLVRGSWLKPGAVVIDV 285 (345)
T ss_pred CEEEEECCCc---ccc-HHHHHHHHHCCCEEEEEcCCCCCHHH---HHhhCCEEEEccCCcCccCHHHcCCCCEEEEc
Confidence 3778899874 111 3355667778888887765 334544 4568999887766 678888899999999986
No 20
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=65.21 E-value=40 Score=34.03 Aligned_cols=68 Identities=16% Similarity=0.306 Sum_probs=49.2
Q ss_pred eEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeC-CCCHHHHHHHhccCcEEEEech-hhhhhhcccCCCcEEEEE
Q 037469 263 RLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEA-NGNLSRFAETVNYCDVFLAVHG-AAMTNMIFLPENAVFIQV 337 (429)
Q Consensus 263 rlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~-~~~~~q~~~l~~sadVlVGvHG-AGLTN~lFl~pga~vIEi 337 (429)
++++|.|.. +--.-+..+|.+.|..|.+... +.++++. .++|||+|..=| +++-..=|.+||++||-+
T Consensus 161 ~vvViGrS~----iVGkPla~lL~~~~ATVtichs~T~~L~~~---~~~ADIvV~AvGkp~~i~~~~vk~GavVIDv 230 (288)
T PRK14171 161 NVVIIGRSN----IVGKPLSALLLKENCSVTICHSKTHNLSSI---TSKADIVVAAIGSPLKLTAEYFNPESIVIDV 230 (288)
T ss_pred EEEEECCCC----cchHHHHHHHHHCCCEEEEeCCCCCCHHHH---HhhCCEEEEccCCCCccCHHHcCCCCEEEEe
Confidence 678888873 2224466677778999987775 3445544 558999998777 566667788999999986
No 21
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=64.15 E-value=15 Score=39.83 Aligned_cols=100 Identities=13% Similarity=0.187 Sum_probs=73.7
Q ss_pred CCCCeEEEEecC--CCccccCHHHHHHHHHhcCCEEEEeeC-CCCHHHHHHHhccCcEEEEech-hhhhhhcccCC--Cc
Q 037469 259 KKKPRLLIVSRK--RTRAFTNAEEIAQMGRRLGFNVVVAEA-NGNLSRFAETVNYCDVFLAVHG-AAMTNMIFLPE--NA 332 (429)
Q Consensus 259 ~~~prlliisR~--~~R~i~Ne~ev~~~l~~~Gf~V~v~e~-~~~~~q~~~l~~sadVlVGvHG-AGLTN~lFl~p--ga 332 (429)
..+|.+-||.=. +.+.--|..|+.+.|++.|.+|.++-+ +.+++++.++- +|++-|.+++ .|..=.-+|.. |.
T Consensus 156 ~~~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~v~p~g~s~~di~~l~-~A~~nivl~~~~g~~~A~~Lee~fGi 234 (519)
T PRK02910 156 TARPSVNLLGPTALGFHHRDDLTELRRLLATLGIDVNVVAPLGASPADLKRLP-AAWFNVVLYREIGESAARYLEREFGQ 234 (519)
T ss_pred CCCCeEEEEecCccCCCChhHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcc-cCcEEEEeCHHHHHHHHHHHHHHhCC
Confidence 356777777643 345567889999999999999988766 68999998865 7799888877 56655566653 45
Q ss_pred EEEEEeeCCCCccccCcchHhHHhhCCCe
Q 037469 333 VFIQVVPFGGFAWLARTDYEEPAKAMKLR 361 (429)
Q Consensus 333 ~vIEi~P~g~~~~~~~~~y~~~A~~~Gl~ 361 (429)
-.+...|.| ++- ...+-+.+|+..|+.
T Consensus 235 P~i~~~PiG-~~~-T~~fL~~la~~~g~~ 261 (519)
T PRK02910 235 PYVKTVPIG-VGA-TARFIREVAELLNLD 261 (519)
T ss_pred ccccccccc-HHH-HHHHHHHHHHHhCCC
Confidence 566778998 332 356778889988874
No 22
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=64.12 E-value=35 Score=34.35 Aligned_cols=72 Identities=17% Similarity=0.256 Sum_probs=52.2
Q ss_pred CCCeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeCCCCHHHHHHHhccCcEEEEech-hhhhhhcccCCCcEEEEE
Q 037469 260 KKPRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEANGNLSRFAETVNYCDVFLAVHG-AAMTNMIFLPENAVFIQV 337 (429)
Q Consensus 260 ~~prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~~~~~~q~~~l~~sadVlVGvHG-AGLTN~lFl~pga~vIEi 337 (429)
..-++++|.|... + =.=+..+|...+..|.+....+ +......++|||+|..=| +++-..=|..||++||.+
T Consensus 155 ~Gk~~vVVGrS~i---V-GkPla~lL~~~naTVtvcHs~T--~~l~~~~k~ADIvv~AvG~p~~i~~d~vk~gavVIDV 227 (283)
T COG0190 155 RGKNVVVVGRSNI---V-GKPLALLLLNANATVTVCHSRT--KDLASITKNADIVVVAVGKPHFIKADMVKPGAVVIDV 227 (283)
T ss_pred CCCEEEEECCCCc---C-cHHHHHHHHhCCCEEEEEcCCC--CCHHHHhhhCCEEEEecCCccccccccccCCCEEEec
Confidence 3457888998841 0 0336667777899999877522 334455668999988877 678888899999999986
No 23
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=64.05 E-value=33 Score=34.36 Aligned_cols=81 Identities=17% Similarity=0.183 Sum_probs=53.5
Q ss_pred HHHHHHHHHhcCCEEEEeeC-C--C-----CH-HHHHHHhccCcEEEEe----------chh------hh--hhhcccCC
Q 037469 278 AEEIAQMGRRLGFNVVVAEA-N--G-----NL-SRFAETVNYCDVFLAV----------HGA------AM--TNMIFLPE 330 (429)
Q Consensus 278 e~ev~~~l~~~Gf~V~v~e~-~--~-----~~-~q~~~l~~sadVlVGv----------HGA------GL--TN~lFl~p 330 (429)
+-++++.|.+.|++|.+..+ + . .+ +.....++.||++|.+ ++. ++ ..+=-||+
T Consensus 14 ~~~~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~ 93 (296)
T PRK08306 14 QLELIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPE 93 (296)
T ss_pred HHHHHHHHHHCCCEEEEEeccccccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcCC
Confidence 35788999999999998654 2 1 12 1224567899999988 443 22 34556899
Q ss_pred CcEEEEEeeCCCCccccCcchHhHHhhCCCeEEEEE
Q 037469 331 NAVFIQVVPFGGFAWLARTDYEEPAKAMKLRYLEYK 366 (429)
Q Consensus 331 ga~vIEi~P~g~~~~~~~~~y~~~A~~~Gl~Y~~y~ 366 (429)
|..++ .-.. .+...+.++..|+..+.|.
T Consensus 94 ~~~v~--~G~~------~~~~~~~~~~~gi~~~~~~ 121 (296)
T PRK08306 94 HCTIF--SGIA------NPYLKELAKETNRKLVELF 121 (296)
T ss_pred CCEEE--EecC------CHHHHHHHHHCCCeEEEEe
Confidence 97554 2221 3345677889999998765
No 24
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=64.01 E-value=12 Score=39.32 Aligned_cols=98 Identities=14% Similarity=0.110 Sum_probs=67.9
Q ss_pred CCCeEEEEecCCC--cc-ccCHHHHHHHHHhcCCEEEEeeC-CCCHHHHHHHhccCcEEEEech-hhhhhhccc--CCCc
Q 037469 260 KKPRLLIVSRKRT--RA-FTNAEEIAQMGRRLGFNVVVAEA-NGNLSRFAETVNYCDVFLAVHG-AAMTNMIFL--PENA 332 (429)
Q Consensus 260 ~~prlliisR~~~--R~-i~Ne~ev~~~l~~~Gf~V~v~e~-~~~~~q~~~l~~sadVlVGvHG-AGLTN~lFl--~pga 332 (429)
.++.+-+|.-... +. --|..|+.+.|++.|++|+.+-+ +.+++++.++- +|..-|.++. +|+.=.-+| +=|.
T Consensus 160 ~~~~VNliG~~~~~~~~~~~d~~ei~~lL~~~Gi~v~~~~~~~~~~~ei~~~~-~A~lniv~~~~~g~~~a~~Lee~~Gi 238 (426)
T cd01972 160 QEDSVNIIGLWGGPERTEQEDVDEFKRLLNELGLRVNAIIAGGCSVEELERAS-EAAANVTLCLDLGYYLGAALEQRFGV 238 (426)
T ss_pred CCCCEEEEccCCCccccccccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcc-cCCEEEEEChhHHHHHHHHHHHHhCC
Confidence 3456666765432 11 36779999999999999987766 58999998865 7788887774 444444444 4477
Q ss_pred EEEEE-eeCCCCccccCcchHhHHhhCCC
Q 037469 333 VFIQV-VPFGGFAWLARTDYEEPAKAMKL 360 (429)
Q Consensus 333 ~vIEi-~P~g~~~~~~~~~y~~~A~~~Gl 360 (429)
-.+++ +|+| .+- ...+++.+|+..|+
T Consensus 239 P~~~~~~P~G-~~~-T~~~l~~ia~~~g~ 265 (426)
T cd01972 239 PEIKAPQPYG-IEA-TDKWLREIAKVLGM 265 (426)
T ss_pred CeEecCCccC-HHH-HHHHHHHHHHHhCC
Confidence 77776 6888 322 25678888888886
No 25
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=63.94 E-value=44 Score=33.61 Aligned_cols=69 Identities=22% Similarity=0.286 Sum_probs=49.9
Q ss_pred CeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeC-CCCHHHHHHHhccCcEEEEech-hhhhhhcccCCCcEEEEE
Q 037469 262 PRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEA-NGNLSRFAETVNYCDVFLAVHG-AAMTNMIFLPENAVFIQV 337 (429)
Q Consensus 262 prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~-~~~~~q~~~l~~sadVlVGvHG-AGLTN~lFl~pga~vIEi 337 (429)
-++++|.|... =-.=+..+|.+.|-.|.+... +.++++ ..++|||+|..=| +++-..=|.+||++||-+
T Consensus 157 k~vvViGrS~i----VGkPla~lL~~~~atVtichs~T~~l~~---~~~~ADIvI~AvG~p~~i~~~~vk~GavVIDv 227 (282)
T PRK14169 157 KRVVIVGRSNI----VGRPLAGLMVNHDATVTIAHSKTRNLKQ---LTKEADILVVAVGVPHFIGADAVKPGAVVIDV 227 (282)
T ss_pred CEEEEECCCcc----chHHHHHHHHHCCCEEEEECCCCCCHHH---HHhhCCEEEEccCCcCccCHHHcCCCcEEEEe
Confidence 37888988741 113466677778999988765 344554 4568999887666 677777889999999986
No 26
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=63.93 E-value=16 Score=38.39 Aligned_cols=96 Identities=14% Similarity=0.097 Sum_probs=67.3
Q ss_pred CCCeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeCCCCHHHHHHHh-ccCcEEEEechhhhhhhcccCCCcEEEEEe
Q 037469 260 KKPRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEANGNLSRFAETV-NYCDVFLAVHGAAMTNMIFLPENAVFIQVV 338 (429)
Q Consensus 260 ~~prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~~~~~~q~~~l~-~sadVlVGvHGAGLTN~lFl~pga~vIEi~ 338 (429)
.++++.++..- + -.+.+|+.+.|++.|.+++.+-++.+++++.++- +.+.+.++..+...+..|= ..|.-.+...
T Consensus 158 ~~~~vniiG~~-~--~~d~~ei~~lL~~~Gl~~~~~l~~~~~~el~~~~~A~~~i~~~~~~~~~a~~Le-~~GvP~~~~~ 233 (416)
T cd01980 158 AEPSLALLGEM-F--PADPVAIGSVLERMGLAAVPVVPTREWRELYAAGDAAAVAALHPFYTATIRELE-EAGRPIVSGA 233 (416)
T ss_pred CCCeEEEEccC-C--CCCHHHHHHHHHHcCCceeeEeCCCCHHHHhhcccCcEEEEeChhHHHHHHHHH-HcCCceecCC
Confidence 34677787532 1 3356799999999999998644578999998876 2334455566665555553 3477777778
Q ss_pred eCCCCccccCcchHhHHhhCCCe
Q 037469 339 PFGGFAWLARTDYEEPAKAMKLR 361 (429)
Q Consensus 339 P~g~~~~~~~~~y~~~A~~~Gl~ 361 (429)
|.| .+ ....+++.+|+..|..
T Consensus 234 piG-~~-~td~~l~~la~~~g~~ 254 (416)
T cd01980 234 PVG-AD-GTAAWLEAVGEALGLD 254 (416)
T ss_pred CcC-ch-HHHHHHHHHHHHhCcC
Confidence 988 44 2467899999999964
No 27
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=63.72 E-value=25 Score=36.93 Aligned_cols=99 Identities=12% Similarity=0.140 Sum_probs=71.7
Q ss_pred CCCeEEEEecC--CCccccCHHHHHHHHHhcCCEEEEeeC-CCCHHHHHHHhccCcEEEEec---hhhhhhhcccCCCcE
Q 037469 260 KKPRLLIVSRK--RTRAFTNAEEIAQMGRRLGFNVVVAEA-NGNLSRFAETVNYCDVFLAVH---GAAMTNMIFLPENAV 333 (429)
Q Consensus 260 ~~prlliisR~--~~R~i~Ne~ev~~~l~~~Gf~V~v~e~-~~~~~q~~~l~~sadVlVGvH---GAGLTN~lFl~pga~ 333 (429)
.++++-||.-. +...--|..|+.+.|++.|.+|+.+-+ +.+++++.++- +|++-|.++ |..++..+--.=|..
T Consensus 161 ~~~~VNiiG~~~~~~~~~~d~~ei~~lL~~~Gl~v~~~~~~~~~~~~i~~~~-~A~lniv~~~~~~~~~a~~L~~~~GiP 239 (430)
T cd01981 161 EKPSVNLIGPSSLGFHNRHDCRELKRLLHTLGIEVNVVIPEGASVDDLNELP-KAWFNIVPYREYGLSAALYLEEEFGMP 239 (430)
T ss_pred CCCcEEEEcCCCCCCCCcchHHHHHHHHHHcCCeEEEEEcCCCCHHHHHhhh-hCeEEEEecHHHHHHHHHHHHHHhCCC
Confidence 34566666544 334567889999999999999987655 68999998866 567766654 455666666566777
Q ss_pred EEEEeeCCCCccccCcchHhHHhhCCCe
Q 037469 334 FIQVVPFGGFAWLARTDYEEPAKAMKLR 361 (429)
Q Consensus 334 vIEi~P~g~~~~~~~~~y~~~A~~~Gl~ 361 (429)
.+...|+| .+- ...+.+.+++..|+.
T Consensus 240 ~~~~~p~G-~~~-t~~~l~~i~~~~g~~ 265 (430)
T cd01981 240 SVKITPIG-VVA-TARFLREIQELLGIQ 265 (430)
T ss_pred eEeccCCC-hHH-HHHHHHHHHHHhCCc
Confidence 77779998 332 356788999988876
No 28
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=63.59 E-value=46 Score=33.54 Aligned_cols=69 Identities=17% Similarity=0.315 Sum_probs=49.9
Q ss_pred CeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeC-CCCHHHHHHHhccCcEEEEech-hhhhhhcccCCCcEEEEE
Q 037469 262 PRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEA-NGNLSRFAETVNYCDVFLAVHG-AAMTNMIFLPENAVFIQV 337 (429)
Q Consensus 262 prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~-~~~~~q~~~l~~sadVlVGvHG-AGLTN~lFl~pga~vIEi 337 (429)
-++++|.|.. +=-.-+..+|.+.|..|.+... +-++++ ..++|||+|+.=| +++-..=|.+||++||-+
T Consensus 160 k~vvViGrS~----iVGkPla~lL~~~~atVt~chs~T~~l~~---~~~~ADIvIsAvGk~~~i~~~~ik~gavVIDv 230 (284)
T PRK14177 160 KNAVVVGRSP----ILGKPMAMLLTEMNATVTLCHSKTQNLPS---IVRQADIIVGAVGKPEFIKADWISEGAVLLDA 230 (284)
T ss_pred CEEEEECCCC----cchHHHHHHHHHCCCEEEEeCCCCCCHHH---HHhhCCEEEEeCCCcCccCHHHcCCCCEEEEe
Confidence 3678888873 2224466677778999988775 334554 4568999987666 567677788999999986
No 29
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=63.07 E-value=35 Score=34.16 Aligned_cols=58 Identities=29% Similarity=0.399 Sum_probs=39.1
Q ss_pred HHHHHHhccCcEEEEechhhh-hhhc--ccCCCcEEEEEee-CCCCccccCcchHhHHhhCCCeEEEEE
Q 037469 302 SRFAETVNYCDVFLAVHGAAM-TNMI--FLPENAVFIQVVP-FGGFAWLARTDYEEPAKAMKLRYLEYK 366 (429)
Q Consensus 302 ~q~~~l~~sadVlVGvHGAGL-TN~l--Fl~pga~vIEi~P-~g~~~~~~~~~y~~~A~~~Gl~Y~~y~ 366 (429)
++....++++|++|..=++++ +.-+ .|+||+++|.+.- .|+ ..| .-|+..|++...+.
T Consensus 202 ~~l~~~l~~aDiVI~t~p~~~i~~~~l~~~~~g~vIIDla~~pgg------td~-~~a~~~Gv~~~~~~ 263 (296)
T PRK08306 202 SELAEEVGKIDIIFNTIPALVLTKEVLSKMPPEALIIDLASKPGG------TDF-EYAEKRGIKALLAP 263 (296)
T ss_pred HHHHHHhCCCCEEEECCChhhhhHHHHHcCCCCcEEEEEccCCCC------cCe-eehhhCCeEEEEEC
Confidence 455567789999997655553 3333 3899999999863 232 335 46788888886553
No 30
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=62.44 E-value=48 Score=33.28 Aligned_cols=69 Identities=17% Similarity=0.331 Sum_probs=49.4
Q ss_pred CeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeC-CCCHHHHHHHhccCcEEEEech-hhhhhhcccCCCcEEEEE
Q 037469 262 PRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEA-NGNLSRFAETVNYCDVFLAVHG-AAMTNMIFLPENAVFIQV 337 (429)
Q Consensus 262 prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~-~~~~~q~~~l~~sadVlVGvHG-AGLTN~lFl~pga~vIEi 337 (429)
-++++|.|... =-.-+..+|.+.|..|.+... +-++++. .++|||+|..=| +++-..=|.+||++||-+
T Consensus 159 k~vvViGrS~~----VGkPla~lL~~~~AtVt~chs~T~~l~~~---~~~ADIvIsAvGkp~~i~~~~ik~gavVIDv 229 (278)
T PRK14172 159 KEVVVIGRSNI----VGKPVAQLLLNENATVTICHSKTKNLKEV---CKKADILVVAIGRPKFIDEEYVKEGAIVIDV 229 (278)
T ss_pred CEEEEECCCcc----chHHHHHHHHHCCCEEEEeCCCCCCHHHH---HhhCCEEEEcCCCcCccCHHHcCCCcEEEEe
Confidence 37788888741 113466677778999988775 3345544 558999988766 567667788999999987
No 31
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=62.39 E-value=43 Score=34.90 Aligned_cols=69 Identities=19% Similarity=0.272 Sum_probs=50.1
Q ss_pred CeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeC-CCCHHHHHHHhccCcEEEEech-hhhhhhcccCCCcEEEEE
Q 037469 262 PRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEA-NGNLSRFAETVNYCDVFLAVHG-AAMTNMIFLPENAVFIQV 337 (429)
Q Consensus 262 prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~-~~~~~q~~~l~~sadVlVGvHG-AGLTN~lFl~pga~vIEi 337 (429)
-++++|.|.. +=-.-+..+|.+.|-.|.+... +-++++. .++|||+|..=| +++-..=|.+||++||-+
T Consensus 232 K~vvVIGRS~----iVGkPLa~LL~~~~ATVTicHs~T~nl~~~---~r~ADIVIsAvGkp~~i~~d~vK~GAvVIDV 302 (364)
T PLN02616 232 KRAVVIGRSN----IVGMPAALLLQREDATVSIVHSRTKNPEEI---TREADIIISAVGQPNMVRGSWIKPGAVVIDV 302 (364)
T ss_pred CEEEEECCCc----cccHHHHHHHHHCCCeEEEeCCCCCCHHHH---HhhCCEEEEcCCCcCcCCHHHcCCCCEEEec
Confidence 3778888873 1113466677778889988775 3445554 568999887766 677777789999999986
No 32
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=62.11 E-value=47 Score=29.47 Aligned_cols=90 Identities=16% Similarity=0.206 Sum_probs=53.8
Q ss_pred CccccCHHHHHHHHHhcCCEEEEeeC-C--CCH--HHH-----------HHHhccCcEEEEechhhhhhhcccCCCcEEE
Q 037469 272 TRAFTNAEEIAQMGRRLGFNVVVAEA-N--GNL--SRF-----------AETVNYCDVFLAVHGAAMTNMIFLPENAVFI 335 (429)
Q Consensus 272 ~R~i~Ne~ev~~~l~~~Gf~V~v~e~-~--~~~--~q~-----------~~l~~sadVlVGvHGAGLTN~lFl~pga~vI 335 (429)
-||+-=..+.++.|.+.|++|.+-.. + ..+ ++. ..++..|||++++..-...-.-.|++|.++|
T Consensus 10 E~RVal~P~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~~~e~~~l~~g~~li 89 (136)
T PF05222_consen 10 ERRVALTPEDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPSEEELALLKPGQTLI 89 (136)
T ss_dssp ---BSS-HHHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS---GGGGGGS-TTCEEE
T ss_pred CcEecccHHHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCCHHHHhhcCCCcEEE
Confidence 45555557788888888999976443 1 111 111 1567789999999999999999999999998
Q ss_pred EEeeCCCCccccCcchHhHHhhCCCeEEEEE
Q 037469 336 QVVPFGGFAWLARTDYEEPAKAMKLRYLEYK 366 (429)
Q Consensus 336 Ei~P~g~~~~~~~~~y~~~A~~~Gl~Y~~y~ 366 (429)
=++.... .......++ ..|+..++|.
T Consensus 90 ~~~~~~~----~~~~~~~l~-~~~it~~a~E 115 (136)
T PF05222_consen 90 GFLHPAQ----NKELLEALA-KKGITAFALE 115 (136)
T ss_dssp EE--GGG----HHHHHHHHH-HCTEEEEEGG
T ss_pred Eeecccc----CHHHHHHHH-HCCCEEEEhh
Confidence 8764431 122333333 4788877764
No 33
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=61.74 E-value=49 Score=33.27 Aligned_cols=69 Identities=17% Similarity=0.243 Sum_probs=49.5
Q ss_pred CeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeC-CCCHHHHHHHhccCcEEEEech-hhhhhhcccCCCcEEEEE
Q 037469 262 PRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEA-NGNLSRFAETVNYCDVFLAVHG-AAMTNMIFLPENAVFIQV 337 (429)
Q Consensus 262 prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~-~~~~~q~~~l~~sadVlVGvHG-AGLTN~lFl~pga~vIEi 337 (429)
-++++|.|... =-.-+..+|.+.|..|.+... +-++++ ..++|||+|..=| +++-..=|.+||++||-+
T Consensus 158 k~vvVvGrS~i----VGkPla~lL~~~~atVt~chs~T~nl~~---~~~~ADIvIsAvGkp~~i~~~~vk~GavVIDv 228 (282)
T PRK14166 158 KDAVIIGASNI----VGRPMATMLLNAGATVSVCHIKTKDLSL---YTRQADLIIVAAGCVNLLRSDMVKEGVIVVDV 228 (282)
T ss_pred CEEEEECCCCc----chHHHHHHHHHCCCEEEEeCCCCCCHHH---HHhhCCEEEEcCCCcCccCHHHcCCCCEEEEe
Confidence 47788888741 113456667778999987775 334554 4568999888766 677777789999999986
No 34
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=61.57 E-value=52 Score=33.13 Aligned_cols=69 Identities=28% Similarity=0.374 Sum_probs=49.5
Q ss_pred CeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeC-CCCHHHHHHHhccCcEEEEech-hhhhhhcccCCCcEEEEE
Q 037469 262 PRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEA-NGNLSRFAETVNYCDVFLAVHG-AAMTNMIFLPENAVFIQV 337 (429)
Q Consensus 262 prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~-~~~~~q~~~l~~sadVlVGvHG-AGLTN~lFl~pga~vIEi 337 (429)
-++++|.|... =-.-+..+|.+.|..|.+... +.++++ ..++|||+|..=| +++-..=|.+||++||-+
T Consensus 158 k~vvViGrS~i----VGkPla~lL~~~~AtVtichs~T~nl~~---~~~~ADIvI~AvGk~~~i~~~~ik~gaiVIDv 228 (282)
T PRK14182 158 KRALVVGRSNI----VGKPMAMMLLERHATVTIAHSRTADLAG---EVGRADILVAAIGKAELVKGAWVKEGAVVIDV 228 (282)
T ss_pred CEEEEECCCCc----chHHHHHHHHHCCCEEEEeCCCCCCHHH---HHhhCCEEEEecCCcCccCHHHcCCCCEEEEe
Confidence 47788888741 113466677778888888775 334554 4568999988766 567777788999999986
No 35
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=61.20 E-value=49 Score=33.35 Aligned_cols=70 Identities=19% Similarity=0.274 Sum_probs=48.8
Q ss_pred CCeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeC-CCCHHHHHHHhccCcEEEEech-hhhhhhcccCCCcEEEEE
Q 037469 261 KPRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEA-NGNLSRFAETVNYCDVFLAVHG-AAMTNMIFLPENAVFIQV 337 (429)
Q Consensus 261 ~prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~-~~~~~q~~~l~~sadVlVGvHG-AGLTN~lFl~pga~vIEi 337 (429)
.-++++|.|... =-.=+..+|.+.|..|.+... +-++++ ..++|||+|..=| +++-..=|.+||++||-+
T Consensus 155 Gk~vvViGrS~i----VGkPla~lL~~~~aTVtichs~T~~l~~---~~~~ADIvIsAvGkp~~i~~~~vk~GavVIDV 226 (287)
T PRK14173 155 GKEVVVVGRSNI----VGKPLAALLLREDATVTLAHSKTQDLPA---VTRRADVLVVAVGRPHLITPEMVRPGAVVVDV 226 (287)
T ss_pred CCEEEEECCCCc----cHHHHHHHHHHCCCEEEEeCCCCCCHHH---HHhhCCEEEEecCCcCccCHHHcCCCCEEEEc
Confidence 347888988741 113355667777889987775 334544 4568999888776 566666678999999986
No 36
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=61.03 E-value=32 Score=35.67 Aligned_cols=96 Identities=14% Similarity=0.090 Sum_probs=66.1
Q ss_pred CCCeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeC-CCCHHHHHHHhccCcEEEEec---hhhhhhhcccCCCcEEE
Q 037469 260 KKPRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEA-NGNLSRFAETVNYCDVFLAVH---GAAMTNMIFLPENAVFI 335 (429)
Q Consensus 260 ~~prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~-~~~~~q~~~l~~sadVlVGvH---GAGLTN~lFl~pga~vI 335 (429)
.+..+-||.-.. ..-|..|+.+.|++.|++++.+-+ +.+++++.++ .+|.+-|.+. |-.++..|-=+=|.-.+
T Consensus 159 ~~~~VNiig~~~--~~~d~~el~~lL~~~Gi~~~~~~~~~~~~~~i~~~-~~A~~niv~~~~~~~~~a~~L~~r~GiP~~ 235 (406)
T cd01967 159 TPYDVNIIGEYN--IGGDAWVIKPLLEELGIRVNATFTGDGTVDELRRA-HRAKLNLVHCSRSMNYLAREMEERYGIPYM 235 (406)
T ss_pred CCCeEEEEeccc--cchhHHHHHHHHHHcCCEEEEEeCCCCCHHHHhhC-ccCCEEEEEChHHHHHHHHHHHHhhCCCEE
Confidence 455666776432 233889999999999999987555 6899999885 4678666554 44455544334466566
Q ss_pred EEeeCCCCccccCcchHhHHhhCCC
Q 037469 336 QVVPFGGFAWLARTDYEEPAKAMKL 360 (429)
Q Consensus 336 Ei~P~g~~~~~~~~~y~~~A~~~Gl 360 (429)
...|+| .+- ...+++.+++.+|.
T Consensus 236 ~~~p~G-~~~-t~~~l~~l~~~lg~ 258 (406)
T cd01967 236 EVNFYG-FED-TSESLRKIAKFFGD 258 (406)
T ss_pred EecCCc-HHH-HHHHHHHHHHHhCC
Confidence 677887 432 35678888888886
No 37
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=60.29 E-value=54 Score=33.25 Aligned_cols=69 Identities=19% Similarity=0.287 Sum_probs=48.7
Q ss_pred CeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeC-CCCHHHHHHHhccCcEEEEech-hhhhhhcccCCCcEEEEE
Q 037469 262 PRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEA-NGNLSRFAETVNYCDVFLAVHG-AAMTNMIFLPENAVFIQV 337 (429)
Q Consensus 262 prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~-~~~~~q~~~l~~sadVlVGvHG-AGLTN~lFl~pga~vIEi 337 (429)
-++++|.|... =-.=+..+|.+.|..|.+... +.++++. .++|||+|..=| +++-..=|.+||++||-+
T Consensus 159 k~vvVIGrS~i----VGkPla~lL~~~~atVtv~hs~T~~l~~~---~~~ADIvIsAvGkp~~i~~~~ik~gavVIDv 229 (297)
T PRK14186 159 KKAVVVGRSIL----VGKPLALMLLAANATVTIAHSRTQDLASI---TREADILVAAAGRPNLIGAEMVKPGAVVVDV 229 (297)
T ss_pred CEEEEECCCcc----chHHHHHHHHHCCCEEEEeCCCCCCHHHH---HhhCCEEEEccCCcCccCHHHcCCCCEEEEe
Confidence 46788988741 113466677778999988775 3345544 568999988766 455556688999999886
No 38
>PF01520 Amidase_3: N-acetylmuramoyl-L-alanine amidase; InterPro: IPR002508 The cell wall envelope of Gram-positive bacteria is a macromolecular, exoskeletal organelle that is assembled and turned over at designated sites. The cell wall also functions as a surface organelle that allows Gram-positive pathogens to interact with their environment, in particular the tissues of the infected host. All of these functions require that surface proteins and enzymes be properly targeted to the cell wall envelope. Two basic mechanisms, cell wall sorting and targeting, have been identified. Cell well sorting is the covalent attachment of surface proteins to the peptidoglycan via a C-terminal sorting signal that contains a consensus LPXTG sequence. More than 100 proteins that possess cell wall-sorting signals, including the M proteins of Streptococcus pyogenes, protein A of Staphylococcus aureus, and several internalins of Listeria monocytogenes, have been identified. Cell wall targeting involves the noncovalent attachment of proteins to the cell surface via specialised binding domains. Several of these wall-binding domains appear to interact with secondary wall polymers that are associated with the peptidoglycan, for example teichoic acids and polysaccharides. Proteins that are targeted to the cell surface include muralytic enzymes such as autolysins, lysostaphin, and phage lytic enzymes. Other examples for targeted proteins are the surface S-layer proteins of bacilli and clostridia, as well as virulence factors required for the pathogenesis of L. monocytogenes (internalin B) and Streptococcus pneumoniae (PspA) infections []. Autolysin 3.5.1.28 from EC hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain bacterial cell wall glycopeptides.; GO: 0008745 N-acetylmuramoyl-L-alanine amidase activity, 0009253 peptidoglycan catabolic process; PDB: 3QAY_A 3CZX_A 1JWQ_A 1XOV_A 3NE8_A.
Probab=58.89 E-value=21 Score=32.14 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCCEEEEeeC---CCCHHHHHHHh--ccCcEEEEechhhhhh
Q 037469 279 EEIAQMGRRLGFNVVVAEA---NGNLSRFAETV--NYCDVFLAVHGAAMTN 324 (429)
Q Consensus 279 ~ev~~~l~~~Gf~V~v~e~---~~~~~q~~~l~--~sadVlVGvHGAGLTN 324 (429)
..|.+.|++.|++|..... +.++.+-.... ..+|++|..|--+-.+
T Consensus 31 ~~l~~~L~~~g~~V~~tr~~d~~~~l~~R~~~an~~~ad~~isiH~na~~~ 81 (175)
T PF01520_consen 31 LRLKKELEKHGIKVYLTRDNDSDVSLQERAALANSWGADLFISIHFNASNG 81 (175)
T ss_dssp HHHHHHHHHTTEEEEESSSSSHCCCHHHHHHHHHHTTSSEEEEEEEE-SSS
T ss_pred HHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhcccCEEEEEeecCccC
Confidence 3456667778999988776 25677666666 6899999999765533
No 39
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=58.43 E-value=60 Score=32.74 Aligned_cols=70 Identities=20% Similarity=0.325 Sum_probs=48.3
Q ss_pred CCeEEEEecCCCccccCHHHHHHHHHhc----CCEEEEeeC-CCCHHHHHHHhccCcEEEEech-hhhhhhcccCCCcEE
Q 037469 261 KPRLLIVSRKRTRAFTNAEEIAQMGRRL----GFNVVVAEA-NGNLSRFAETVNYCDVFLAVHG-AAMTNMIFLPENAVF 334 (429)
Q Consensus 261 ~prlliisR~~~R~i~Ne~ev~~~l~~~----Gf~V~v~e~-~~~~~q~~~l~~sadVlVGvHG-AGLTN~lFl~pga~v 334 (429)
.-++++|.|... + -.-+..+|.+. |..|.+... +.++++. .++|||+|..=| +++-..=|.+||++|
T Consensus 153 Gk~vvViGrS~i---V-GkPla~lL~~~~~~~~AtVtvchs~T~~l~~~---~~~ADIvV~AvG~p~~i~~~~ik~GavV 225 (287)
T PRK14181 153 GRHVAIVGRSNI---V-GKPLAALLMQKHPDTNATVTLLHSQSENLTEI---LKTADIIIAAIGVPLFIKEEMIAEKAVI 225 (287)
T ss_pred CCEEEEECCCcc---c-hHHHHHHHHhCcCCCCCEEEEeCCCCCCHHHH---HhhCCEEEEccCCcCccCHHHcCCCCEE
Confidence 347788988741 1 13355566666 778887764 3345544 568999987766 567777789999999
Q ss_pred EEE
Q 037469 335 IQV 337 (429)
Q Consensus 335 IEi 337 (429)
|-+
T Consensus 226 IDv 228 (287)
T PRK14181 226 VDV 228 (287)
T ss_pred EEe
Confidence 986
No 40
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=58.03 E-value=61 Score=32.88 Aligned_cols=70 Identities=19% Similarity=0.236 Sum_probs=48.8
Q ss_pred CCeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeC-CCCHHHHHHHhccCcEEEEech-hhhhhhcccCCCcEEEEE
Q 037469 261 KPRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEA-NGNLSRFAETVNYCDVFLAVHG-AAMTNMIFLPENAVFIQV 337 (429)
Q Consensus 261 ~prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~-~~~~~q~~~l~~sadVlVGvHG-AGLTN~lFl~pga~vIEi 337 (429)
.-++++|.|... =-.=+..+|.+.|..|.+... +-++++ ..++|||+|..=| +++-..=|..||++||-+
T Consensus 167 Gk~vvVIGRS~i----VGkPla~lL~~~~ATVtvchs~T~nl~~---~~~~ADIvv~AvGk~~~i~~~~vk~gavVIDv 238 (299)
T PLN02516 167 GKKAVVVGRSNI----VGLPVSLLLLKADATVTVVHSRTPDPES---IVREADIVIAAAGQAMMIKGDWIKPGAAVIDV 238 (299)
T ss_pred CCEEEEECCCcc----chHHHHHHHHHCCCEEEEeCCCCCCHHH---HHhhCCEEEEcCCCcCccCHHHcCCCCEEEEe
Confidence 347888988741 113456667778999988875 334554 4568999887765 455556678999999886
No 41
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=57.56 E-value=35 Score=30.38 Aligned_cols=54 Identities=13% Similarity=0.105 Sum_probs=38.6
Q ss_pred CCCeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeCCCCHHHHHHHhccCcE
Q 037469 260 KKPRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEANGNLSRFAETVNYCDV 313 (429)
Q Consensus 260 ~~prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~~~~~~q~~~l~~sadV 313 (429)
++|++++..=.+-..-+...-+..+++..||+|+.+-.+.+.+++.+.+.+.++
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~ 55 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETDA 55 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCC
Confidence 456776665555555555555667888899999988778899888887766443
No 42
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=57.20 E-value=70 Score=32.16 Aligned_cols=69 Identities=13% Similarity=0.210 Sum_probs=49.3
Q ss_pred CeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeC-CCCHHHHHHHhccCcEEEEech-hhhhhhcccCCCcEEEEE
Q 037469 262 PRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEA-NGNLSRFAETVNYCDVFLAVHG-AAMTNMIFLPENAVFIQV 337 (429)
Q Consensus 262 prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~-~~~~~q~~~l~~sadVlVGvHG-AGLTN~lFl~pga~vIEi 337 (429)
-++++|.|... + -.-+..+|.+.|-.|.+... +-+++ ...++|||+|..=| +++-..=|.+||++||.+
T Consensus 158 k~vvViGrS~~---V-G~Pla~lL~~~~AtVti~hs~T~~l~---~~~~~ADIvV~AvGkp~~i~~~~vk~gavvIDv 228 (281)
T PRK14183 158 KDVCVVGASNI---V-GKPMAALLLNANATVDICHIFTKDLK---AHTKKADIVIVGVGKPNLITEDMVKEGAIVIDI 228 (281)
T ss_pred CEEEEECCCCc---c-hHHHHHHHHHCCCEEEEeCCCCcCHH---HHHhhCCEEEEecCcccccCHHHcCCCcEEEEe
Confidence 37888988731 1 13356667777888887654 22344 45678999888776 677777889999999987
No 43
>cd02696 MurNAc-LAA N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs
Probab=56.23 E-value=28 Score=31.34 Aligned_cols=46 Identities=26% Similarity=0.393 Sum_probs=35.3
Q ss_pred HHHHHHHHhcCCEEEEeeCC---CCHHHHHHHhcc--CcEEEEechhhhhh
Q 037469 279 EEIAQMGRRLGFNVVVAEAN---GNLSRFAETVNY--CDVFLAVHGAAMTN 324 (429)
Q Consensus 279 ~ev~~~l~~~Gf~V~v~e~~---~~~~q~~~l~~s--adVlVGvHGAGLTN 324 (429)
..+.+.|++.|++|+....+ .++++-....|+ +|++|..|-.+-.+
T Consensus 32 ~~l~~~L~~~G~~v~~~r~~~~~~~l~~r~~~an~~~~d~~islH~na~~~ 82 (172)
T cd02696 32 LKLAKLLEAAGAKVVLTRDDDTFVSLSERVAIANRAGADLFISIHANAAPN 82 (172)
T ss_pred HHHHHHHHHCCCEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEeecCCCC
Confidence 44566667779999877762 578877777775 99999999877766
No 44
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=56.01 E-value=69 Score=32.22 Aligned_cols=69 Identities=16% Similarity=0.230 Sum_probs=49.7
Q ss_pred CeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeC-CCCHHHHHHHhccCcEEEEech-hhhhhhcccCCCcEEEEE
Q 037469 262 PRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEA-NGNLSRFAETVNYCDVFLAVHG-AAMTNMIFLPENAVFIQV 337 (429)
Q Consensus 262 prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~-~~~~~q~~~l~~sadVlVGvHG-AGLTN~lFl~pga~vIEi 337 (429)
-++++|.|... =-.-+..+|.+.|-.|.+... +.++.+ ..++|||+|..=| +++-..=|.+||++||-+
T Consensus 159 k~vvViGrS~~----VGkPla~lL~~~~ATVt~chs~T~dl~~---~~k~ADIvIsAvGkp~~i~~~~vk~gavVIDv 229 (282)
T PRK14180 159 AYAVVVGASNV----VGKPVSQLLLNAKATVTTCHRFTTDLKS---HTTKADILIVAVGKPNFITADMVKEGAVVIDV 229 (282)
T ss_pred CEEEEECCCCc----chHHHHHHHHHCCCEEEEEcCCCCCHHH---HhhhcCEEEEccCCcCcCCHHHcCCCcEEEEe
Confidence 47788988741 113456667778989988765 334554 4568999988776 677777788999999987
No 45
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=55.89 E-value=72 Score=31.85 Aligned_cols=58 Identities=28% Similarity=0.353 Sum_probs=40.5
Q ss_pred HHHHHHHhccCcEEEEechhhhhh---hcccCCCcEEEEEeeCCCCccccCcchHhHHhhCCCeEEE
Q 037469 301 LSRFAETVNYCDVFLAVHGAAMTN---MIFLPENAVFIQVVPFGGFAWLARTDYEEPAKAMKLRYLE 364 (429)
Q Consensus 301 ~~q~~~l~~sadVlVGvHGAGLTN---~lFl~pga~vIEi~P~g~~~~~~~~~y~~~A~~~Gl~Y~~ 364 (429)
+++....++.+|++|-.=..++.+ +-.|++++.+|.+.-.. ..+.| ..|+..|++.+-
T Consensus 200 ~~~l~~~l~~aDiVint~P~~ii~~~~l~~~k~~aliIDlas~P-----g~tdf-~~Ak~~G~~a~~ 260 (287)
T TIGR02853 200 LNKLEEKVAEIDIVINTIPALVLTADVLSKLPKHAVIIDLASKP-----GGTDF-EYAKKRGIKALL 260 (287)
T ss_pred HHHHHHHhccCCEEEECCChHHhCHHHHhcCCCCeEEEEeCcCC-----CCCCH-HHHHHCCCEEEE
Confidence 345556678999999866666533 22479999999986322 14567 789999998764
No 46
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=55.36 E-value=71 Score=32.34 Aligned_cols=69 Identities=14% Similarity=0.268 Sum_probs=49.6
Q ss_pred CeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeC-CCCHHHHHHHhccCcEEEEech-hhhhhhcccCCCcEEEEE
Q 037469 262 PRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEA-NGNLSRFAETVNYCDVFLAVHG-AAMTNMIFLPENAVFIQV 337 (429)
Q Consensus 262 prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~-~~~~~q~~~l~~sadVlVGvHG-AGLTN~lFl~pga~vIEi 337 (429)
-++++|.|... =-.-+..+|.+.|..|.+... +-++++ ..++|||+|..=| +++-..=|.+||++||-+
T Consensus 161 k~vvViGrS~i----VGkPla~lL~~~~aTVt~chs~T~~l~~---~~~~ADIvVsAvGkp~~i~~~~ik~gaiVIDV 231 (294)
T PRK14187 161 SDAVVIGRSNI----VGKPMACLLLGENCTVTTVHSATRDLAD---YCSKADILVAAVGIPNFVKYSWIKKGAIVIDV 231 (294)
T ss_pred CEEEEECCCcc----chHHHHHHHhhCCCEEEEeCCCCCCHHH---HHhhCCEEEEccCCcCccCHHHcCCCCEEEEe
Confidence 37788888731 113466677778999988775 334554 4568999988776 566677788999999987
No 47
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.52 E-value=67 Score=32.41 Aligned_cols=71 Identities=18% Similarity=0.232 Sum_probs=46.4
Q ss_pred CeEEEEecCCCccccCHHHHHHHHHh----cCCEEEEeeCCCCHHHHHHHhccCcEEEEechh-hhhhhcccCCCcEEEE
Q 037469 262 PRLLIVSRKRTRAFTNAEEIAQMGRR----LGFNVVVAEANGNLSRFAETVNYCDVFLAVHGA-AMTNMIFLPENAVFIQ 336 (429)
Q Consensus 262 prlliisR~~~R~i~Ne~ev~~~l~~----~Gf~V~v~e~~~~~~q~~~l~~sadVlVGvHGA-GLTN~lFl~pga~vIE 336 (429)
-++++|.|.. +=-.-+..+|.+ .|-.|.+...++ ..+...+++|||+|+.=|. ++---=|.+||++||-
T Consensus 158 k~vvViGrS~----iVG~Pla~lL~~~~~~~~AtVt~~hs~t--~~l~~~~~~ADIVI~AvG~p~li~~~~vk~GavVID 231 (286)
T PRK14184 158 KKAVVVGRSN----IVGKPLALMLGAPGKFANATVTVCHSRT--PDLAEECREADFLFVAIGRPRFVTADMVKPGAVVVD 231 (286)
T ss_pred CEEEEECCCc----cchHHHHHHHhCCcccCCCEEEEEeCCc--hhHHHHHHhCCEEEEecCCCCcCCHHHcCCCCEEEE
Confidence 4778888874 112345666766 677887766422 2344456689999988765 3333336699999998
Q ss_pred Ee
Q 037469 337 VV 338 (429)
Q Consensus 337 i~ 338 (429)
+-
T Consensus 232 VG 233 (286)
T PRK14184 232 VG 233 (286)
T ss_pred ee
Confidence 73
No 48
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=53.95 E-value=79 Score=31.99 Aligned_cols=71 Identities=17% Similarity=0.259 Sum_probs=43.9
Q ss_pred CCeEEEEecCCCccccCHHHHHHHHHh----cCCEEEEeeCCCCHHHHHHHhccCcEEEEechhh-hhhhcccCCCcEEE
Q 037469 261 KPRLLIVSRKRTRAFTNAEEIAQMGRR----LGFNVVVAEANGNLSRFAETVNYCDVFLAVHGAA-MTNMIFLPENAVFI 335 (429)
Q Consensus 261 ~prlliisR~~~R~i~Ne~ev~~~l~~----~Gf~V~v~e~~~~~~q~~~l~~sadVlVGvHGAG-LTN~lFl~pga~vI 335 (429)
.-++++|.|... +. .-+..+|.+ .|..|.+...+. ..+...++.|||+|+.=|.. +-..=|.+||++||
T Consensus 159 Gk~vvViGrS~i---VG-~Pla~lL~~~~~~~~atVt~~hs~t--~~l~~~~~~ADIvI~Avg~~~li~~~~vk~GavVI 232 (295)
T PRK14174 159 GKHCVVVGRSNI---VG-KPMANLMLQKLKESNCTVTICHSAT--KDIPSYTRQADILIAAIGKARFITADMVKPGAVVI 232 (295)
T ss_pred CCEEEEECCCCc---ch-HHHHHHHHhccccCCCEEEEEeCCc--hhHHHHHHhCCEEEEecCccCccCHHHcCCCCEEE
Confidence 347888998841 11 123333433 588888776522 22344467899999987644 33333569999999
Q ss_pred EE
Q 037469 336 QV 337 (429)
Q Consensus 336 Ei 337 (429)
-+
T Consensus 233 DV 234 (295)
T PRK14174 233 DV 234 (295)
T ss_pred Ee
Confidence 87
No 49
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=53.88 E-value=38 Score=32.29 Aligned_cols=74 Identities=14% Similarity=0.147 Sum_probs=50.2
Q ss_pred CCCeEEEEecCCCccccCHHHHHHHHHhcCCEEEEee---------------CCC---CHH-HHHHHhccCcEEEEech-
Q 037469 260 KKPRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAE---------------ANG---NLS-RFAETVNYCDVFLAVHG- 319 (429)
Q Consensus 260 ~~prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e---------------~~~---~~~-q~~~l~~sadVlVGvHG- 319 (429)
..-++++|.|.. +=-.-+..+|.+.|..|.+.+ ..+ +.+ +....+++|||+|..=|
T Consensus 61 ~GK~vvVIGrS~----iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~ 136 (197)
T cd01079 61 YGKTITIINRSE----VVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPS 136 (197)
T ss_pred CCCEEEEECCCc----cchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccCC
Confidence 344788898873 111346667777899998883 111 211 25567789999988766
Q ss_pred hhh-hhhcccCCCcEEEEE
Q 037469 320 AAM-TNMIFLPENAVFIQV 337 (429)
Q Consensus 320 AGL-TN~lFl~pga~vIEi 337 (429)
+++ -..=|..||++||-+
T Consensus 137 ~~~~i~~d~ik~GavVIDV 155 (197)
T cd01079 137 PNYKVPTELLKDGAICINF 155 (197)
T ss_pred CCCccCHHHcCCCcEEEEc
Confidence 455 567789999999886
No 50
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=53.35 E-value=79 Score=31.88 Aligned_cols=72 Identities=14% Similarity=0.149 Sum_probs=50.1
Q ss_pred CCeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeCCCCHHHHHHHhccCcEEEEech-hhhhhhcccCCCcEEEEEe
Q 037469 261 KPRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEANGNLSRFAETVNYCDVFLAVHG-AAMTNMIFLPENAVFIQVV 338 (429)
Q Consensus 261 ~prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~~~~~~q~~~l~~sadVlVGvHG-AGLTN~lFl~pga~vIEi~ 338 (429)
.-++++|.|.. +=-.-+..+|.+.|-.|.+....+ .++....+.|||+|..=| +++-..=|.+||++||.+=
T Consensus 159 Gk~vvViGrs~----iVG~Pla~lL~~~~atVtv~hs~T--~~l~~~~~~ADIvi~avG~p~~v~~~~vk~gavVIDvG 231 (285)
T PRK10792 159 GLNAVVVGASN----IVGRPMSLELLLAGCTVTVCHRFT--KNLRHHVRNADLLVVAVGKPGFIPGEWIKPGAIVIDVG 231 (285)
T ss_pred CCEEEEECCCc----ccHHHHHHHHHHCCCeEEEEECCC--CCHHHHHhhCCEEEEcCCCcccccHHHcCCCcEEEEcc
Confidence 34778888863 112346667778899998877522 233444568999998776 5666666789999999974
No 51
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=52.80 E-value=83 Score=31.71 Aligned_cols=70 Identities=17% Similarity=0.284 Sum_probs=47.7
Q ss_pred CCeEEEEecCCCccccCHHHHHHHHHh--cCCEEEEeeC-CCCHHHHHHHhccCcEEEEech-hhhhhhcccCCCcEEEE
Q 037469 261 KPRLLIVSRKRTRAFTNAEEIAQMGRR--LGFNVVVAEA-NGNLSRFAETVNYCDVFLAVHG-AAMTNMIFLPENAVFIQ 336 (429)
Q Consensus 261 ~prlliisR~~~R~i~Ne~ev~~~l~~--~Gf~V~v~e~-~~~~~q~~~l~~sadVlVGvHG-AGLTN~lFl~pga~vIE 336 (429)
.-++++|.|... + -.=+..+|.+ .|..|.+... +.++++ ..++|||+|..=| +++-..=|.+||++||-
T Consensus 158 Gk~vvViGrS~~---V-GkPla~lL~~~~~~atVtvchs~T~~l~~---~~k~ADIvV~AvGkp~~i~~~~ik~GavVID 230 (284)
T PRK14193 158 GAHVVVIGRGVT---V-GRPIGLLLTRRSENATVTLCHTGTRDLAA---HTRRADIIVAAAGVAHLVTADMVKPGAAVLD 230 (284)
T ss_pred CCEEEEECCCCc---c-hHHHHHHHhhccCCCEEEEeCCCCCCHHH---HHHhCCEEEEecCCcCccCHHHcCCCCEEEE
Confidence 347788998741 1 1234555655 5888887775 334554 4568999998777 46666668899999988
Q ss_pred E
Q 037469 337 V 337 (429)
Q Consensus 337 i 337 (429)
+
T Consensus 231 v 231 (284)
T PRK14193 231 V 231 (284)
T ss_pred c
Confidence 6
No 52
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=52.77 E-value=44 Score=31.94 Aligned_cols=78 Identities=22% Similarity=0.250 Sum_probs=51.4
Q ss_pred HHHHHHhc--CCEEEEeeCCCC------HHHHHHHhccCcEEEEechhhhhhhcccCCCcEEEEEeeCCCCccccCcchH
Q 037469 281 IAQMGRRL--GFNVVVAEANGN------LSRFAETVNYCDVFLAVHGAAMTNMIFLPENAVFIQVVPFGGFAWLARTDYE 352 (429)
Q Consensus 281 v~~~l~~~--Gf~V~v~e~~~~------~~q~~~l~~sadVlVGvHGAGLTN~lFl~pga~vIEi~P~g~~~~~~~~~y~ 352 (429)
+-+++.+. .-+|+++-.+++ ++++...-..+||+|++-=-|=||++|.++- -+++- +|+ -.++.
T Consensus 76 i~aa~~~~~~p~~v~vvmaDLPLl~~~~i~~~~~~~~d~dvviaP~~gGGTn~L~~r~~--~~~~~-y~g-----~SF~~ 147 (210)
T COG1920 76 INAALDEIPLPSEVIVVMADLPLLSPEHIERALSAAKDADVVIAPGRGGGTNVLFARKS--AFRPR-YGG-----VSFLR 147 (210)
T ss_pred HHHHHhhCCCCcceEEEecccccCCHHHHHHHHHhcCCCcEEEecCCCCceEEEEEecc--ccccc-ccC-----ccHHH
Confidence 44444444 234555444554 4666677777899999999999999999992 22221 221 33444
Q ss_pred h--HHhhCCCeEEEEE
Q 037469 353 E--PAKAMKLRYLEYK 366 (429)
Q Consensus 353 ~--~A~~~Gl~Y~~y~ 366 (429)
. .|+.+|+.+..|.
T Consensus 148 Hl~~Ark~G~~~~~~d 163 (210)
T COG1920 148 HLEEARKRGLVVLTYD 163 (210)
T ss_pred HHHHHHHcCCEEEEec
Confidence 3 5899999999885
No 53
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=52.30 E-value=86 Score=31.80 Aligned_cols=70 Identities=20% Similarity=0.359 Sum_probs=47.8
Q ss_pred CCeEEEEecCCCccccCHHHHHHHHHhc----CCEEEEeeC-CCCHHHHHHHhccCcEEEEech-hhhhhhcccCCCcEE
Q 037469 261 KPRLLIVSRKRTRAFTNAEEIAQMGRRL----GFNVVVAEA-NGNLSRFAETVNYCDVFLAVHG-AAMTNMIFLPENAVF 334 (429)
Q Consensus 261 ~prlliisR~~~R~i~Ne~ev~~~l~~~----Gf~V~v~e~-~~~~~q~~~l~~sadVlVGvHG-AGLTN~lFl~pga~v 334 (429)
.-++++|.|... + -.-+..+|.+. |..|.+... +-++++ ..++|||+|..=| +++-..=|.+||++|
T Consensus 161 Gk~vvViGrS~i---V-GkPla~lL~~~~~~~~atVtv~hs~T~~l~~---~~~~ADIvVsAvGkp~~i~~~~ik~gavV 233 (297)
T PRK14168 161 GAEVVVVGRSNI---V-GKPIANMMTQKGPGANATVTIVHTRSKNLAR---HCQRADILIVAAGVPNLVKPEWIKPGATV 233 (297)
T ss_pred CCEEEEECCCCc---c-cHHHHHHHHhcccCCCCEEEEecCCCcCHHH---HHhhCCEEEEecCCcCccCHHHcCCCCEE
Confidence 347888998741 1 12355556555 677877654 334544 4568999997655 677788889999999
Q ss_pred EEE
Q 037469 335 IQV 337 (429)
Q Consensus 335 IEi 337 (429)
|-+
T Consensus 234 IDv 236 (297)
T PRK14168 234 IDV 236 (297)
T ss_pred Eec
Confidence 987
No 54
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.72 E-value=84 Score=31.86 Aligned_cols=69 Identities=20% Similarity=0.333 Sum_probs=47.3
Q ss_pred CeEEEEecCCCccccCHHHHHHHHHhc----CCEEEEeeC-CCCHHHHHHHhccCcEEEEech-hhhhhhcccCCCcEEE
Q 037469 262 PRLLIVSRKRTRAFTNAEEIAQMGRRL----GFNVVVAEA-NGNLSRFAETVNYCDVFLAVHG-AAMTNMIFLPENAVFI 335 (429)
Q Consensus 262 prlliisR~~~R~i~Ne~ev~~~l~~~----Gf~V~v~e~-~~~~~q~~~l~~sadVlVGvHG-AGLTN~lFl~pga~vI 335 (429)
-++++|.|... + -.-+..+|.+. +..|.+... +-++++ ..++|||+|..=| +++-..=|.+||++||
T Consensus 158 k~vvViGrS~i---V-GkPla~lL~~~~~~~~aTVtvchs~T~~l~~---~~~~ADIvIsAvGkp~~i~~~~ik~gaiVI 230 (297)
T PRK14167 158 ADVVVVGRSDI---V-GKPMANLLIQKADGGNATVTVCHSRTDDLAA---KTRRADIVVAAAGVPELIDGSMLSEGATVI 230 (297)
T ss_pred CEEEEECCCcc---c-HHHHHHHHhcCccCCCCEEEEeCCCCCCHHH---HHhhCCEEEEccCCcCccCHHHcCCCCEEE
Confidence 36888998741 1 12345555555 678877654 234544 4568999998766 6787888899999999
Q ss_pred EE
Q 037469 336 QV 337 (429)
Q Consensus 336 Ei 337 (429)
-+
T Consensus 231 Dv 232 (297)
T PRK14167 231 DV 232 (297)
T ss_pred Ec
Confidence 86
No 55
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=50.62 E-value=70 Score=29.04 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=29.9
Q ss_pred CCCCeEEEEecC---CCccccCHHHHHHHHHhcCCEEEEeeCCCCHHHHHHHh
Q 037469 259 KKKPRLLIVSRK---RTRAFTNAEEIAQMGRRLGFNVVVAEANGNLSRFAETV 308 (429)
Q Consensus 259 ~~~prlliisR~---~~R~i~Ne~ev~~~l~~~Gf~V~v~e~~~~~~q~~~l~ 308 (429)
.+|||+++..=. ..|.. .-+.++++..||||+..-...+-+|.++..
T Consensus 10 g~rprvlvak~GlDgHd~ga---kvia~~l~d~GfeVi~~g~~~tp~e~v~aA 59 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGA---KVIARALADAGFEVINLGLFQTPEEAVRAA 59 (143)
T ss_pred CCCceEEEeccCccccccch---HHHHHHHHhCCceEEecCCcCCHHHHHHHH
Confidence 478998876433 13432 345678889999998765544556665544
No 56
>PF13271 DUF4062: Domain of unknown function (DUF4062)
Probab=50.45 E-value=37 Score=27.29 Aligned_cols=43 Identities=28% Similarity=0.458 Sum_probs=30.2
Q ss_pred HHHHHHHHhcCCEEEEeeC-----CCCHHHHHHHhccCcEEEEechhh
Q 037469 279 EEIAQMGRRLGFNVVVAEA-----NGNLSRFAETVNYCDVFLAVHGAA 321 (429)
Q Consensus 279 ~ev~~~l~~~Gf~V~v~e~-----~~~~~q~~~l~~sadVlVGvHGAG 321 (429)
+.+.+.+.+.|++.+..+. ..+.+-..+.+.+||++||.=|.-
T Consensus 16 ~~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~~cDifI~ilG~r 63 (83)
T PF13271_consen 16 DALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVDECDIFILILGNR 63 (83)
T ss_pred HHHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHhhCCEEEEeeccc
Confidence 3466667777887766554 234566667788999999988754
No 57
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.20 E-value=1e+02 Score=31.13 Aligned_cols=71 Identities=18% Similarity=0.212 Sum_probs=49.5
Q ss_pred CCeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeC-CCCHHHHHHHhccCcEEEEech-hhhhhhcccCCCcEEEEEe
Q 037469 261 KPRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEA-NGNLSRFAETVNYCDVFLAVHG-AAMTNMIFLPENAVFIQVV 338 (429)
Q Consensus 261 ~prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~-~~~~~q~~~l~~sadVlVGvHG-AGLTN~lFl~pga~vIEi~ 338 (429)
.-++++|.|.+ +=-.-+..+|.+.|..|.+... +-+++ ...++|||+|..=| +++-..=|.+||++||.+=
T Consensus 164 Gk~vvViGrs~----iVGkPla~lL~~~~atVtv~hs~T~~l~---~~~~~ADIvv~AvG~p~~i~~~~vk~gavVIDvG 236 (287)
T PRK14176 164 GKNAVIVGHSN----VVGKPMAAMLLNRNATVSVCHVFTDDLK---KYTLDADILVVATGVKHLIKADMVKEGAVIFDVG 236 (287)
T ss_pred CCEEEEECCCc----ccHHHHHHHHHHCCCEEEEEeccCCCHH---HHHhhCCEEEEccCCccccCHHHcCCCcEEEEec
Confidence 34778888863 1224466777888999988775 23444 44568999986433 5666777899999999973
No 58
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.17 E-value=1e+02 Score=31.22 Aligned_cols=69 Identities=22% Similarity=0.320 Sum_probs=47.7
Q ss_pred CeEEEEecCCCccccCHHHHHHHHHhc----CCEEEEeeC-CCCHHHHHHHhccCcEEEEech-hhhhhhcccCCCcEEE
Q 037469 262 PRLLIVSRKRTRAFTNAEEIAQMGRRL----GFNVVVAEA-NGNLSRFAETVNYCDVFLAVHG-AAMTNMIFLPENAVFI 335 (429)
Q Consensus 262 prlliisR~~~R~i~Ne~ev~~~l~~~----Gf~V~v~e~-~~~~~q~~~l~~sadVlVGvHG-AGLTN~lFl~pga~vI 335 (429)
-++++|.|... + -.-+..+|.+. +..|.+... +.++++. .++|||+|..=| +++-..=|.+||++||
T Consensus 158 K~vvViGrS~i---V-GkPla~lL~~~~~~~~aTVtvchs~T~nl~~~---~~~ADIvIsAvGkp~~i~~~~vk~gavVI 230 (293)
T PRK14185 158 KKCVVLGRSNI---V-GKPMAQLMMQKAYPGDCTVTVCHSRSKNLKKE---CLEADIIIAALGQPEFVKADMVKEGAVVI 230 (293)
T ss_pred CEEEEECCCcc---c-hHHHHHHHHcCCCCCCCEEEEecCCCCCHHHH---HhhCCEEEEccCCcCccCHHHcCCCCEEE
Confidence 37788988741 1 13355566665 577877654 3456554 458999998766 5677777889999999
Q ss_pred EE
Q 037469 336 QV 337 (429)
Q Consensus 336 Ei 337 (429)
-+
T Consensus 231 Dv 232 (293)
T PRK14185 231 DV 232 (293)
T ss_pred Ee
Confidence 86
No 59
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=49.14 E-value=52 Score=35.74 Aligned_cols=100 Identities=12% Similarity=0.173 Sum_probs=73.3
Q ss_pred CCCCeEEEEecC--CCccccCHHHHHHHHHhcCCEEEEeeC-CCCHHHHHHHhccCcEEEEe-chhhhhhhcccCC--Cc
Q 037469 259 KKKPRLLIVSRK--RTRAFTNAEEIAQMGRRLGFNVVVAEA-NGNLSRFAETVNYCDVFLAV-HGAAMTNMIFLPE--NA 332 (429)
Q Consensus 259 ~~~prlliisR~--~~R~i~Ne~ev~~~l~~~Gf~V~v~e~-~~~~~q~~~l~~sadVlVGv-HGAGLTN~lFl~p--ga 332 (429)
..++++=||.-. +.+.--|..|+.+.|++.|.+|..+-+ +.+++++.++- +|++=|.+ +-.|+.=.=+|.. |.
T Consensus 161 ~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~vn~v~~~g~sl~di~~~~-~A~~NIvl~~~~g~~~A~~Le~~fgi 239 (513)
T CHL00076 161 TDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEINQIIPEGGSVEDLKNLP-KAWFNIVPYREVGLMTAKYLEKEFGM 239 (513)
T ss_pred CCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeEEEEECCCCCHHHHHhcc-cCcEEEEechhhhHHHHHHHHHHhCC
Confidence 456677777655 456667889999999999999986665 78999998865 67887766 3466655666665 66
Q ss_pred EEEEEeeCCCCccccCcchHhHHhhCCCe
Q 037469 333 VFIQVVPFGGFAWLARTDYEEPAKAMKLR 361 (429)
Q Consensus 333 ~vIEi~P~g~~~~~~~~~y~~~A~~~Gl~ 361 (429)
-.+...|.| ..- ...+-+.+|+..|..
T Consensus 240 P~i~~~PiG-i~~-T~~fLr~la~~lg~~ 266 (513)
T CHL00076 240 PYISTTPMG-IVD-TAECIRQIQKILNKL 266 (513)
T ss_pred CeEeeccCC-HHH-HHHHHHHHHHHhCCC
Confidence 667788998 321 356778899988863
No 60
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=48.83 E-value=26 Score=36.64 Aligned_cols=96 Identities=7% Similarity=0.070 Sum_probs=62.8
Q ss_pred CCeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeC-CCCHHHHHHHhccCcEEEEe-chhhhhhhccc--CCCcEEEE
Q 037469 261 KPRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEA-NGNLSRFAETVNYCDVFLAV-HGAAMTNMIFL--PENAVFIQ 336 (429)
Q Consensus 261 ~prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~-~~~~~q~~~l~~sadVlVGv-HGAGLTN~lFl--~pga~vIE 336 (429)
+..+-||.- ....-|..|+.+.|++.|++|+..-+ +.+++++.++- +|..-|.+ +.+|.-=.=+| +=|.-.+.
T Consensus 158 ~~~VNiig~--~~~~~d~~el~~lL~~~Gl~v~~~~~~~~s~eei~~~~-~A~lniv~~~~~~~~~a~~L~~~fGip~~~ 234 (410)
T cd01968 158 PYDINLIGE--FNVAGELWGVKPLLEKLGIRVLASITGDSRVDEIRRAH-RAKLNVVQCSKSMIYLARKMEEKYGIPYIE 234 (410)
T ss_pred CCcEEEECC--CCCcccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhhh-hCcEEEEEchhHHHHHHHHHHHHhCCCeEe
Confidence 345556652 23345778999999999999986444 67999998866 55665543 32332223334 33666677
Q ss_pred EeeCCCCccccCcchHhHHhhCCCe
Q 037469 337 VVPFGGFAWLARTDYEEPAKAMKLR 361 (429)
Q Consensus 337 i~P~g~~~~~~~~~y~~~A~~~Gl~ 361 (429)
..|+| .+. ...+++.+|+..|..
T Consensus 235 ~~p~G-~~~-t~~~l~~ia~~~g~~ 257 (410)
T cd01968 235 VSFYG-IRD-TSKSLRNIAELLGDE 257 (410)
T ss_pred cCcCc-HHH-HHHHHHHHHHHhCCc
Confidence 77787 443 357889999988864
No 61
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.17 E-value=36 Score=34.26 Aligned_cols=71 Identities=15% Similarity=0.262 Sum_probs=50.5
Q ss_pred CeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeCCCCHHHHHHHhccCcEEEEechhh-hhhhcccCCCcEEEEEe
Q 037469 262 PRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEANGNLSRFAETVNYCDVFLAVHGAA-MTNMIFLPENAVFIQVV 338 (429)
Q Consensus 262 prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~~~~~~q~~~l~~sadVlVGvHGAG-LTN~lFl~pga~vIEi~ 338 (429)
-++++|.|.+. + -.-+..+|.+.|..|.+..-.+ .+....+++|||+|+.=|.. +-.-=+.++|++||.+=
T Consensus 159 k~vvVIGrs~~---V-G~pla~lL~~~gatVtv~~s~t--~~l~~~~~~ADIVIsAvg~p~~i~~~~vk~gavVIDvG 230 (286)
T PRK14175 159 KNAVVIGRSHI---V-GQPVSKLLLQKNASVTILHSRS--KDMASYLKDADVIVSAVGKPGLVTKDVVKEGAVIIDVG 230 (286)
T ss_pred CEEEEECCCch---h-HHHHHHHHHHCCCeEEEEeCCc--hhHHHHHhhCCEEEECCCCCcccCHHHcCCCcEEEEcC
Confidence 47888888631 1 1346677778899998887522 34445677999999988876 55555789999999983
No 62
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=47.81 E-value=89 Score=31.10 Aligned_cols=93 Identities=16% Similarity=0.150 Sum_probs=56.7
Q ss_pred eEEEEecCCCccccCHHHHHHHHHhcCCE--EEEeeCCCCHHHHHHHhccCcEEEEechhhhhh---------hcccCCC
Q 037469 263 RLLIVSRKRTRAFTNAEEIAQMGRRLGFN--VVVAEANGNLSRFAETVNYCDVFLAVHGAAMTN---------MIFLPEN 331 (429)
Q Consensus 263 rlliisR~~~R~i~Ne~ev~~~l~~~Gf~--V~v~e~~~~~~q~~~l~~sadVlVGvHGAGLTN---------~lFl~pg 331 (429)
++++++|+.. .....+++.+.+.+.+.. +...+. .+.+++...+..+|++|-..-.||.. .-+++++
T Consensus 152 ~V~I~~R~~~-~~~~a~~l~~~l~~~~~~~~~~~~d~-~~~~~~~~~~~~~DilINaTp~Gm~~~~~~~~~~~~~~l~~~ 229 (289)
T PRK12548 152 EITIFNIKDD-FYERAEQTAEKIKQEVPECIVNVYDL-NDTEKLKAEIASSDILVNATLVGMKPNDGETNIKDTSVFRKD 229 (289)
T ss_pred EEEEEeCCch-HHHHHHHHHHHHhhcCCCceeEEech-hhhhHHHhhhccCCEEEEeCCCCCCCCCCCCCCCcHHhcCCC
Confidence 4778888631 011235566666554333 222232 23345555677889999877777743 2257888
Q ss_pred cEEEEEeeCCCCccccCcchHhHHhhCCCeE
Q 037469 332 AVFIQVVPFGGFAWLARTDYEEPAKAMKLRY 362 (429)
Q Consensus 332 a~vIEi~P~g~~~~~~~~~y~~~A~~~Gl~Y 362 (429)
.+|++++-.- .++.+-..|+..|.+.
T Consensus 230 ~~v~D~vY~P-----~~T~ll~~A~~~G~~~ 255 (289)
T PRK12548 230 LVVADTVYNP-----KKTKLLEDAEAAGCKT 255 (289)
T ss_pred CEEEEecCCC-----CCCHHHHHHHHCCCee
Confidence 9999997321 2567888899988764
No 63
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=46.85 E-value=50 Score=29.50 Aligned_cols=39 Identities=18% Similarity=0.141 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCEEEEeeCCCCHHHHHHHhccCcE-EEEe
Q 037469 279 EEIAQMGRRLGFNVVVAEANGNLSRFAETVNYCDV-FLAV 317 (429)
Q Consensus 279 ~ev~~~l~~~Gf~V~v~e~~~~~~q~~~l~~sadV-lVGv 317 (429)
.-+..+|+..||+|+-+-.+.+.+++++...+.|+ +||+
T Consensus 19 ~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~~adiVgl 58 (134)
T TIGR01501 19 KILDHAFTNAGFNVVNLGVLSPQEEFIKAAIETKADAILV 58 (134)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE
Confidence 34566789999999976667888888887776555 5555
No 64
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=45.56 E-value=42 Score=28.95 Aligned_cols=78 Identities=21% Similarity=0.256 Sum_probs=55.1
Q ss_pred HHHHHHHHhcCCEEEEeeCCCCHHHHHHHhccCcEEEEechhhhhhhcccC-CCcEEEEEeeCCCCccccCcchHhHHhh
Q 037469 279 EEIAQMGRRLGFNVVVAEANGNLSRFAETVNYCDVFLAVHGAAMTNMIFLP-ENAVFIQVVPFGGFAWLARTDYEEPAKA 357 (429)
Q Consensus 279 ~ev~~~l~~~Gf~V~v~e~~~~~~q~~~l~~sadVlVGvHGAGLTN~lFl~-pga~vIEi~P~g~~~~~~~~~y~~~A~~ 357 (429)
++..+.|++ |++|...+ ..+-++..+.+..+|++|+-++..++--++-. |+-.+|...--| .+.. . -..|+.
T Consensus 9 ~~~~~~l~~-~~~v~~~~-~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G-~d~i---d-~~~a~~ 81 (133)
T PF00389_consen 9 DEEIERLEE-GFEVEFCD-SPSEEELAERLKDADAIIVGSGTPLTAEVLEAAPNLKLISTAGAG-VDNI---D-LEAAKE 81 (133)
T ss_dssp HHHHHHHHH-TSEEEEES-SSSHHHHHHHHTTESEEEESTTSTBSHHHHHHHTT-SEEEESSSS-CTTB-----HHHHHH
T ss_pred HHHHHHHHC-CceEEEeC-CCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhccceeEEEEEcccc-cCcc---c-HHHHhh
Confidence 667788888 88888877 57888999999999999997777676555533 888888876665 2221 1 344667
Q ss_pred CCCeEE
Q 037469 358 MKLRYL 363 (429)
Q Consensus 358 ~Gl~Y~ 363 (429)
.|+...
T Consensus 82 ~gI~V~ 87 (133)
T PF00389_consen 82 RGIPVT 87 (133)
T ss_dssp TTSEEE
T ss_pred CeEEEE
Confidence 787643
No 65
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=45.01 E-value=27 Score=35.63 Aligned_cols=80 Identities=15% Similarity=0.118 Sum_probs=45.0
Q ss_pred HHHHHHHHhcCCEEEEeeC---CCCHHHHHHHhccCcEEEEechhhhhhhcccCCCcEEEEEe---eCCCCc-cccCcch
Q 037469 279 EEIAQMGRRLGFNVVVAEA---NGNLSRFAETVNYCDVFLAVHGAAMTNMIFLPENAVFIQVV---PFGGFA-WLARTDY 351 (429)
Q Consensus 279 ~ev~~~l~~~Gf~V~v~e~---~~~~~q~~~l~~sadVlVGvHGAGLTN~lFl~pga~vIEi~---P~g~~~-~~~~~~y 351 (429)
.|++++|+..||+++++|. ..+=-+++.+. .+-+++-++|+|=-=... .+-++||- --++.+ -.+..-+
T Consensus 133 ~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~a-Dt~~~v~~pg~GD~~Q~i---K~GimEiaDi~vINKaD~~~A~~a~ 208 (323)
T COG1703 133 REAIKLLDAAGYDVIIVETVGVGQSEVDIANMA-DTFLVVMIPGAGDDLQGI---KAGIMEIADIIVINKADRKGAEKAA 208 (323)
T ss_pred HHHHHHHHhcCCCEEEEEecCCCcchhHHhhhc-ceEEEEecCCCCcHHHHH---HhhhhhhhheeeEeccChhhHHHHH
Confidence 6889999999999999996 23434555544 556677777766322221 13344431 111100 1134456
Q ss_pred HhHHhhCCCeE
Q 037469 352 EEPAKAMKLRY 362 (429)
Q Consensus 352 ~~~A~~~Gl~Y 362 (429)
.++..++.+.+
T Consensus 209 r~l~~al~~~~ 219 (323)
T COG1703 209 RELRSALDLLR 219 (323)
T ss_pred HHHHHHHHhhc
Confidence 66667777665
No 66
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=42.94 E-value=70 Score=28.24 Aligned_cols=40 Identities=28% Similarity=0.249 Sum_probs=26.4
Q ss_pred HHHHHHHhcCCEEEEeeCCCCHHHHHHHhccCcE-EEEech
Q 037469 280 EIAQMGRRLGFNVVVAEANGNLSRFAETVNYCDV-FLAVHG 319 (429)
Q Consensus 280 ev~~~l~~~Gf~V~v~e~~~~~~q~~~l~~sadV-lVGvHG 319 (429)
=+..+++..||+|+....+.+.+++++...+.++ +||+-+
T Consensus 21 iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSs 61 (132)
T TIGR00640 21 VIATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSS 61 (132)
T ss_pred HHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcC
Confidence 3556778889999866656677777666555555 445443
No 67
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=39.25 E-value=1.2e+02 Score=27.56 Aligned_cols=55 Identities=15% Similarity=0.111 Sum_probs=36.3
Q ss_pred cCHHHHHHHHHhcCCEEEEeeC---C-CCHHHH-HHH--hccCcEEEEechhhhhhhcccCC
Q 037469 276 TNAEEIAQMGRRLGFNVVVAEA---N-GNLSRF-AET--VNYCDVFLAVHGAAMTNMIFLPE 330 (429)
Q Consensus 276 ~Ne~ev~~~l~~~Gf~V~v~e~---~-~~~~q~-~~l--~~sadVlVGvHGAGLTN~lFl~p 330 (429)
.|-.-+.+.+++.|+++....- + ..+.+. .+. .+.+|++|--=|+|.+--=+.|+
T Consensus 22 ~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g~~D~t~e 83 (163)
T TIGR02667 22 TSGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTGFTGRDVTPE 83 (163)
T ss_pred CcHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCCCcHH
Confidence 4666788889999998875443 2 123332 232 24699999998888776555554
No 68
>PRK10319 N-acetylmuramoyl-l-alanine amidase I; Provisional
Probab=39.04 E-value=58 Score=32.73 Aligned_cols=55 Identities=20% Similarity=0.304 Sum_probs=36.4
Q ss_pred HHHHHHhcCCEEEEeeC-C--CCHHHHHHHhc--cCcEEEEechhhhhhhcccCCCcEEEEEeeC
Q 037469 281 IAQMGRRLGFNVVVAEA-N--GNLSRFAETVN--YCDVFLAVHGAAMTNMIFLPENAVFIQVVPF 340 (429)
Q Consensus 281 v~~~l~~~Gf~V~v~e~-~--~~~~q~~~l~~--sadVlVGvHGAGLTN~lFl~pga~vIEi~P~ 340 (429)
|.+.|++.|++|+.... + .++.+=+++.| .||++|++|--+.++ |.+.=+|++-+
T Consensus 91 l~~~L~~~G~~V~lTR~~D~~vsL~~R~~~An~~~ADlFISIH~Ns~~~-----~~a~G~evy~~ 150 (287)
T PRK10319 91 VRSILRNHGIDARLTRSGDTFIPLYDRVEIAHKHGADLFMSIHADGFTN-----PKAAGASVFAL 150 (287)
T ss_pred HHHHHHHCCCEEEEeCCCCCCCCHHHHHHHHHhcCCCEEEEecCCCCCC-----CCCcEEEEEEe
Confidence 44555666999987776 3 56765555555 799999999655432 34455666644
No 69
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=38.65 E-value=1.2e+02 Score=29.59 Aligned_cols=50 Identities=20% Similarity=0.224 Sum_probs=36.7
Q ss_pred ccCcEEEEechhhhhhh----c----ccCCCcEEEEEeeCCCCccccCcchHhHHhhCCCeEE
Q 037469 309 NYCDVFLAVHGAAMTNM----I----FLPENAVFIQVVPFGGFAWLARTDYEEPAKAMKLRYL 363 (429)
Q Consensus 309 ~sadVlVGvHGAGLTN~----l----Fl~pga~vIEi~P~g~~~~~~~~~y~~~A~~~Gl~Y~ 363 (429)
.++|++|..-++|+..- . +++++..|+++.-.. ..+.+...|+..|.+++
T Consensus 177 ~~~DivInatp~gm~~~~~~~~~~~~~l~~~~~v~D~~y~p-----~~T~ll~~A~~~G~~~v 234 (270)
T TIGR00507 177 HRVDLIINATSAGMSGNIDEPPVPAEKLKEGMVVYDMVYNP-----GETPFLAEAKSLGTKTI 234 (270)
T ss_pred cCccEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEeccCC-----CCCHHHHHHHHCCCeee
Confidence 47899999999987532 1 368899999996332 13458888999998764
No 70
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=38.54 E-value=1.3e+02 Score=27.67 Aligned_cols=70 Identities=24% Similarity=0.219 Sum_probs=43.6
Q ss_pred eEEEEecCCCccccCHHHHHHHHHh-cCCEEEEeeCCCCHHHHHHHhccCcEEEEechhhhhhh----cccCCCcEEEEE
Q 037469 263 RLLIVSRKRTRAFTNAEEIAQMGRR-LGFNVVVAEANGNLSRFAETVNYCDVFLAVHGAAMTNM----IFLPENAVFIQV 337 (429)
Q Consensus 263 rlliisR~~~R~i~Ne~ev~~~l~~-~Gf~V~v~e~~~~~~q~~~l~~sadVlVGvHGAGLTN~----lFl~pga~vIEi 337 (429)
++++++|+. ...+++.+.+++ .+.++...+. .+.++....++.+|++|..-.+|+.+. .+..++.+++.+
T Consensus 54 ~V~l~~R~~----~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~diVi~at~~g~~~~~~~~~~~~~~~vv~D~ 128 (194)
T cd01078 54 RVVLVGRDL----ERAQKAADSLRARFGEGVGAVET-SDDAARAAAIKGADVVFAAGAAGVELLEKLAWAPKPLAVAADV 128 (194)
T ss_pred EEEEEcCCH----HHHHHHHHHHHhhcCCcEEEeeC-CCHHHHHHHHhcCCEEEECCCCCceechhhhcccCceeEEEEc
Confidence 677777752 223445554543 3666655543 467777778889999999988888421 123346677775
No 71
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=38.08 E-value=37 Score=36.26 Aligned_cols=96 Identities=9% Similarity=0.099 Sum_probs=64.1
Q ss_pred CCeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeC-CCCHHHHHHHhccCcEEEEec---hhhhhhhcccCCCcEEEE
Q 037469 261 KPRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEA-NGNLSRFAETVNYCDVFLAVH---GAAMTNMIFLPENAVFIQ 336 (429)
Q Consensus 261 ~prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~-~~~~~q~~~l~~sadVlVGvH---GAGLTN~lFl~pga~vIE 336 (429)
+..+-+|. ..-.--|..|+.+.|++.|++++..-+ +.+++++.++- +|+.-|.+. |..++..|=-+=|.-.+.
T Consensus 199 ~~~VNiiG--~~~~~gd~~el~~lL~~~Gl~v~~~~~g~~s~~ei~~~~-~A~lniv~~~~~~~~~A~~Le~~~GiP~~~ 275 (457)
T TIGR01284 199 EYDVNLIG--EYNIQGDLWVLKKYFERMGIQVLSTFTGNGCYDELRWMH-RAKLNVVRCARSANYIANELEERYGIPRLD 275 (457)
T ss_pred CCeEEEEc--cCCchhhHHHHHHHHHHcCCeEEEEECCCCCHHHHHhcc-ccCEEEEEChHHHHHHHHHHHHHhCCCeEe
Confidence 34566664 222224567899999999999974444 78999998865 556644332 434556554444777888
Q ss_pred EeeCCCCccccCcchHhHHhhCCCe
Q 037469 337 VVPFGGFAWLARTDYEEPAKAMKLR 361 (429)
Q Consensus 337 i~P~g~~~~~~~~~y~~~A~~~Gl~ 361 (429)
+-|+| ++. ...+.+.+|+..|+.
T Consensus 276 ~~~~G-~~~-T~~~l~~ia~~~g~~ 298 (457)
T TIGR01284 276 IDFFG-FEY-CAKNLRKIGEFFGIE 298 (457)
T ss_pred cccCC-HHH-HHHHHHHHHHHhCCc
Confidence 77777 443 356889999999965
No 72
>TIGR02883 spore_cwlD N-acetylmuramoyl-L-alanine amidase CwlD. Members of this protein family are the CwlD family of N-acetylmuramoyl-L-alanine amidase. This family has been called the germination-specific N-acetylmuramoyl-L-alanine amidase. CwlD is required, along with the putative deactylase PdaA, to make muramic delta-lactam, a novel peptidoglycan constituent found only in spores. CwlD mutants show a germination defect.
Probab=37.40 E-value=83 Score=29.18 Aligned_cols=46 Identities=20% Similarity=0.347 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCCEEEEeeC-CC----------------CHHHHHHHhc--cCcEEEEechhhhhh
Q 037469 279 EEIAQMGRRLGFNVVVAEA-NG----------------NLSRFAETVN--YCDVFLAVHGAAMTN 324 (429)
Q Consensus 279 ~ev~~~l~~~Gf~V~v~e~-~~----------------~~~q~~~l~~--sadVlVGvHGAGLTN 324 (429)
.+|.+.|++.|++|+.... +. ++.|-+.+.| .||++|++|--+..+
T Consensus 33 ~~l~~~L~~~G~~V~ltr~~d~~~~~~~~~~~~~~~~~~L~~R~~~An~~~adlfiSiH~Na~~~ 97 (189)
T TIGR02883 33 LKLKDYLQEQGALVVMTREDDSDLASEGTKGYSRRKIEDLRKRVKLINESEADLFISIHLNAFPS 97 (189)
T ss_pred HHHHHHHHhCCCEEEEEecCCcCccccccccccccccCCHHHHHHHHHhcCCCEEEEEecCCCCC
Confidence 3466677778999986655 21 4555555555 589999999877643
No 73
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=36.73 E-value=1.2e+02 Score=28.49 Aligned_cols=61 Identities=13% Similarity=0.077 Sum_probs=43.8
Q ss_pred CCCCeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeCCCCHHHHHHHhccCcE-EEEech
Q 037469 259 KKKPRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEANGNLSRFAETVNYCDV-FLAVHG 319 (429)
Q Consensus 259 ~~~prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~~~~~~q~~~l~~sadV-lVGvHG 319 (429)
+.++++++..=.|-..=+...-+...++..||+|+.+..+.+.+++.+.+...+. +||+=.
T Consensus 82 ~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~pd~v~lS~ 143 (197)
T TIGR02370 82 EVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEKPLMLTGSA 143 (197)
T ss_pred CCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcc
Confidence 3567888877666555555566777888899999988778888888877766554 444433
No 74
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=36.52 E-value=43 Score=30.94 Aligned_cols=76 Identities=14% Similarity=0.190 Sum_probs=44.5
Q ss_pred HHHHHHHHhc-CCEEEEeeC--CCCHHHHHHHhccCcEEEEechhhhhhhcccCCC-cEEEEEeeCCCCccccCcchHhH
Q 037469 279 EEIAQMGRRL-GFNVVVAEA--NGNLSRFAETVNYCDVFLAVHGAAMTNMIFLPEN-AVFIQVVPFGGFAWLARTDYEEP 354 (429)
Q Consensus 279 ~ev~~~l~~~-Gf~V~v~e~--~~~~~q~~~l~~sadVlVGvHGAGLTN~lFl~pg-a~vIEi~P~g~~~~~~~~~y~~~ 354 (429)
.++.+.+++. .=+.+...- .+++.+++..+..-+=+||+| .|.||. ..++||+|...+.-..-..-..+
T Consensus 94 ~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~H-------f~~P~~~~~lVEvv~~~~T~~~~~~~~~~~ 166 (180)
T PF02737_consen 94 QELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMH-------FFNPPHLMPLVEVVPGPKTSPETVDRVRAL 166 (180)
T ss_dssp HHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEE-------E-SSTTT--EEEEEE-TTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEe-------cccccccCceEEEeCCCCCCHHHHHHHHHH
Confidence 5677777776 444444443 467899998888888899999 456775 89999999874322112233445
Q ss_pred HhhCCCe
Q 037469 355 AKAMKLR 361 (429)
Q Consensus 355 A~~~Gl~ 361 (429)
++.+|..
T Consensus 167 ~~~~gk~ 173 (180)
T PF02737_consen 167 LRSLGKT 173 (180)
T ss_dssp HHHTT-E
T ss_pred HHHCCCE
Confidence 5566654
No 75
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=36.19 E-value=68 Score=34.75 Aligned_cols=99 Identities=15% Similarity=0.179 Sum_probs=68.2
Q ss_pred CCCeEEEEecC--CCccccCHHHHHHHHHhcCCEEEEeeC-CCCHHHHHHHhccCcEEEEech-hhhhhhccc--CCCcE
Q 037469 260 KKPRLLIVSRK--RTRAFTNAEEIAQMGRRLGFNVVVAEA-NGNLSRFAETVNYCDVFLAVHG-AAMTNMIFL--PENAV 333 (429)
Q Consensus 260 ~~prlliisR~--~~R~i~Ne~ev~~~l~~~Gf~V~v~e~-~~~~~q~~~l~~sadVlVGvHG-AGLTN~lFl--~pga~ 333 (429)
.++.+-||.=. +.+.--|..|+.+.|++.|++|.++-+ +.+++++.++- +|++=|.+.+ .|+.-.-+| .=|.-
T Consensus 157 ~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v~p~g~s~~dl~~l~-~A~~NIv~~~~~g~~~A~~Le~~fGiP 235 (511)
T TIGR01278 157 EKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNVVAPWGASIADLARLP-AAWLNICPYREIGLMAAEYLKEKFGQP 235 (511)
T ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhcc-cCcEEEEechHHHHHHHHHHHHHhCCC
Confidence 45667777543 344556788999999999999987755 68999998865 6677666554 555444444 33555
Q ss_pred EEEEeeCCCCccccCcchHhHHhhC---CCe
Q 037469 334 FIQVVPFGGFAWLARTDYEEPAKAM---KLR 361 (429)
Q Consensus 334 vIEi~P~g~~~~~~~~~y~~~A~~~---Gl~ 361 (429)
.+...|.| .+. ...+-+.+++.. |+.
T Consensus 236 ~i~~~PiG-~~~-T~~fL~~l~~~~~~~g~~ 264 (511)
T TIGR01278 236 YITTTPIG-VNA-TRRFIREIAALLNQAGAD 264 (511)
T ss_pred cccccccC-HHH-HHHHHHHHHHHHhhcCCC
Confidence 55568998 332 356778888877 754
No 76
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=34.39 E-value=58 Score=34.11 Aligned_cols=96 Identities=13% Similarity=0.099 Sum_probs=62.6
Q ss_pred CCeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeC-CCCHHHHHHHhccCcEEEEech-hhhhhhcccC--CCcEEEE
Q 037469 261 KPRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEA-NGNLSRFAETVNYCDVFLAVHG-AAMTNMIFLP--ENAVFIQ 336 (429)
Q Consensus 261 ~prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~-~~~~~q~~~l~~sadVlVGvHG-AGLTN~lFl~--pga~vIE 336 (429)
+..+-+|. ....--|.+|+.+.|++.|++++..-+ +.+++++.++- +|..-|.+.+ .|+-=.-+|. =|.-.+.
T Consensus 162 ~~~VNliG--~~~~~~d~~ei~~lL~~~Gl~v~~~~~~~~t~~ei~~~~-~A~lnlv~~~~~~~~~A~~L~er~GiP~~~ 238 (415)
T cd01977 162 DYTINYIG--DYNIQGDTEVLQKYFERMGIQVLSTFTGNGTYDDLRWMH-RAKLNVVNCARSAGYIANELKKRYGIPRLD 238 (415)
T ss_pred CCcEEEEc--cCCCcccHHHHHHHHHHcCCeEEEEECCCCCHHHHHhcc-cCCEEEEEchhHHHHHHHHHHHHhCCCeEE
Confidence 34566664 223344667899999999999974444 68999998755 5666554432 3433334443 3676777
Q ss_pred EeeCCCCccccCcchHhHHhhCCCe
Q 037469 337 VVPFGGFAWLARTDYEEPAKAMKLR 361 (429)
Q Consensus 337 i~P~g~~~~~~~~~y~~~A~~~Gl~ 361 (429)
+-|+| .+. ...+++.+|+..|+.
T Consensus 239 ~~~~G-~~~-t~~~l~~la~~~g~~ 261 (415)
T cd01977 239 VDGFG-FEY-CAESLRKIGAFFGIE 261 (415)
T ss_pred eccCC-HHH-HHHHHHHHHHHhCcc
Confidence 76777 443 356889999998865
No 77
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=34.19 E-value=1.5e+02 Score=24.54 Aligned_cols=54 Identities=19% Similarity=0.186 Sum_probs=34.0
Q ss_pred eEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeCCCCHHHHHHHhc--cCcEEEEe
Q 037469 263 RLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEANGNLSRFAETVN--YCDVFLAV 317 (429)
Q Consensus 263 rlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~~~~~~q~~~l~~--sadVlVGv 317 (429)
|+++..+....-=+...-+...+++.|++|..++.+.+.+++.+.+. +.|+ ||+
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~-V~i 57 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDV-VGI 57 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSE-EEE
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcE-EEE
Confidence 45555665555555667788899999999998887555444433322 4465 444
No 78
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=33.59 E-value=58 Score=34.43 Aligned_cols=82 Identities=13% Similarity=0.110 Sum_probs=60.6
Q ss_pred CHHHHHHHHHhcCCEEEEeeCCCCHHHHHHHhcc-CcEEEEechhhhhhhcccCCCcEEEEEeeCCCCccccCcchHhHH
Q 037469 277 NAEEIAQMGRRLGFNVVVAEANGNLSRFAETVNY-CDVFLAVHGAAMTNMIFLPENAVFIQVVPFGGFAWLARTDYEEPA 355 (429)
Q Consensus 277 Ne~ev~~~l~~~Gf~V~v~e~~~~~~q~~~l~~s-adVlVGvHGAGLTN~lFl~pga~vIEi~P~g~~~~~~~~~y~~~A 355 (429)
|..|+.+.+++.|.++.++-+..+++++..+-++ +.++++.+. +.+-.++..-|...++..|.| .+. ...+.+.+|
T Consensus 178 d~~eik~lL~~~Gi~~~~~~~G~~~~ei~~a~~A~~~i~l~~~~-~~a~~l~~~~GvP~~~~~PiG-~~~-Td~fL~~la 254 (422)
T TIGR02015 178 DAMVIGGVLQPIGVESGPTVPGRDWRELYAALDSSAVAVLHPFY-EATARLFEAAGVKIVGSAPVG-ANG-TGEWLERIG 254 (422)
T ss_pred cHHHHHHHHHHcCCCeEEecCCCCHHHHHhhhcCeEEEEeCccc-hHHHHHHHHcCCceeccCCCC-hHH-HHHHHHHHH
Confidence 6788999999999999776666699999887642 244555443 466777777787778878998 443 356788999
Q ss_pred hhCCCe
Q 037469 356 KAMKLR 361 (429)
Q Consensus 356 ~~~Gl~ 361 (429)
+..|..
T Consensus 255 ~~~G~~ 260 (422)
T TIGR02015 255 EALDLD 260 (422)
T ss_pred HHhCcC
Confidence 998865
No 79
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=33.37 E-value=60 Score=34.46 Aligned_cols=95 Identities=14% Similarity=0.139 Sum_probs=63.3
Q ss_pred CCeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeC-CCCHHHHHHHhccCcEEEEech-hh--hhhhcccCCCcEEEE
Q 037469 261 KPRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEA-NGNLSRFAETVNYCDVFLAVHG-AA--MTNMIFLPENAVFIQ 336 (429)
Q Consensus 261 ~prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~-~~~~~q~~~l~~sadVlVGvHG-AG--LTN~lFl~pga~vIE 336 (429)
+..+-||.= ...--|.+|+.+.|++.|++++..-+ +.+++++..+- +|..-|.+.+ +| ++..|==+=|.-.+.
T Consensus 191 ~~~VNiig~--~~~~~d~~el~~lL~~~Gl~v~~~~~~~~t~eei~~~~-~A~lniv~~~~~~~~~A~~L~er~GiP~~~ 267 (443)
T TIGR01862 191 EYDVNIIGE--YNIGGDAWVMRIYLEEMGIQVVATFTGDGTYDEIRLMH-KAKLNLVHCARSANYIANELEERYGIPWMK 267 (443)
T ss_pred CCeEEEEcc--CcCcccHHHHHHHHHHcCCeEEEEECCCCCHHHHHhcc-cCCEEEEEChHHHHHHHHHHHHHhCCCeEe
Confidence 445666652 22345788999999999999975444 67899998755 5666665443 23 344432233777777
Q ss_pred EeeCCCCccccCcchHhHHhhCCC
Q 037469 337 VVPFGGFAWLARTDYEEPAKAMKL 360 (429)
Q Consensus 337 i~P~g~~~~~~~~~y~~~A~~~Gl 360 (429)
+-|+| ++. ...++..+|+..|+
T Consensus 268 ~~p~G-~~~-t~~~l~~la~~~gi 289 (443)
T TIGR01862 268 IDFFG-FTY-TAESLRAIAAFFGI 289 (443)
T ss_pred cccCC-HHH-HHHHHHHHHHHhCC
Confidence 77877 443 35688899988885
No 80
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=33.34 E-value=1.6e+02 Score=29.06 Aligned_cols=52 Identities=19% Similarity=0.194 Sum_probs=39.1
Q ss_pred HHhccCcEEEEechhhhhh--------hcccCCCcEEEEEeeCCCCccccCcchHhHHhhCCCeE
Q 037469 306 ETVNYCDVFLAVHGAAMTN--------MIFLPENAVFIQVVPFGGFAWLARTDYEEPAKAMKLRY 362 (429)
Q Consensus 306 ~l~~sadVlVGvHGAGLTN--------~lFl~pga~vIEi~P~g~~~~~~~~~y~~~A~~~Gl~Y 362 (429)
..+..+|++|..-.+|+-. .-++++++.|++++-.. ..+.|-..|+..|++.
T Consensus 181 ~~~~~~DivInaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P-----~~T~ll~~A~~~G~~~ 240 (278)
T PRK00258 181 EELADFDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGP-----LPTPFLAWAKAQGART 240 (278)
T ss_pred hccccCCEEEECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCC-----CCCHHHHHHHHCcCee
Confidence 3456899999999999853 13468889999997532 2567888899999865
No 81
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=33.10 E-value=58 Score=34.23 Aligned_cols=98 Identities=12% Similarity=0.132 Sum_probs=67.6
Q ss_pred CCCeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeC-------------------CCCHHHHHHHhccCcEEEEech-
Q 037469 260 KKPRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEA-------------------NGNLSRFAETVNYCDVFLAVHG- 319 (429)
Q Consensus 260 ~~prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~-------------------~~~~~q~~~l~~sadVlVGvHG- 319 (429)
.+.++-+|.-.. -.--|..|+.+.|++.|++++.+-+ +.+++++.++- +|..-|.++-
T Consensus 154 ~~~~VNlig~~~-~~~~d~~el~~lL~~~Gl~v~~~~~~s~~~d~~~~~~~~~~~~gg~~~e~i~~~~-~A~lniv~~~~ 231 (428)
T cd01965 154 KNGKVNLLPGFP-LTPGDVREIKRILEAFGLEPIILPDLSDSLDGHLTDGYSPLTKGGTTLEEIRDAG-NAKATIALGEY 231 (428)
T ss_pred CCCeEEEECCCC-CCccCHHHHHHHHHHcCCCEEEecCcccccCCCCCCCccccCCCCCcHHHHHHhc-cCcEEEEEChh
Confidence 445566664321 1112889999999999999987531 36789998755 6788877777
Q ss_pred hhhhhhcccCC--CcEEEEEe-eCCCCccccCcchHhHHhhCCCe
Q 037469 320 AAMTNMIFLPE--NAVFIQVV-PFGGFAWLARTDYEEPAKAMKLR 361 (429)
Q Consensus 320 AGLTN~lFl~p--ga~vIEi~-P~g~~~~~~~~~y~~~A~~~Gl~ 361 (429)
+|..-.-+|.. |.-.+..- |+| .+- ...+++.+|+..|..
T Consensus 232 ~~~~~a~~L~e~~GiP~~~~~~p~G-~~~-t~~~l~~l~~~~g~~ 274 (428)
T cd01965 232 SGRKAAKALEEKFGVPYILFPTPIG-LKA-TDEFLRALSKLSGKP 274 (428)
T ss_pred hhHHHHHHHHHHHCCCeeecCCCcC-hHH-HHHHHHHHHHHHCCC
Confidence 77766666654 67677765 888 332 356788888888764
No 82
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=33.01 E-value=85 Score=33.09 Aligned_cols=96 Identities=13% Similarity=0.066 Sum_probs=64.0
Q ss_pred CCeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeC-CCCHHHHHHHhccCcEEEEec--hhh-hhhhcccCCCcEEEE
Q 037469 261 KPRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEA-NGNLSRFAETVNYCDVFLAVH--GAA-MTNMIFLPENAVFIQ 336 (429)
Q Consensus 261 ~prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~-~~~~~q~~~l~~sadVlVGvH--GAG-LTN~lFl~pga~vIE 336 (429)
+..+-||.= ...--|..|+.+.|++.|.+++..-+ +.+++++..+- +|..-|.+. +++ ++..|==+=|.-.++
T Consensus 172 ~~~VNiiG~--~~~~~d~~el~~lL~~~Gi~v~~~~~~~~t~eei~~~~-~A~lniv~~~~~~~~~a~~Le~~fGiP~~~ 248 (421)
T cd01976 172 PYDVNIIGD--YNIGGDAWASRILLEEMGLRVVAQWSGDGTLNEMENAH-KAKLNLIHCYRSMNYIARMMEEKYGIPWME 248 (421)
T ss_pred CCeEEEEec--CCCCccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcc-cCCEEEEECcHHHHHHHHHHHHHhCCcEEe
Confidence 455666652 22235778999999999999985444 68999998765 567666653 332 344442234777777
Q ss_pred EeeCCCCccccCcchHhHHhhCCCe
Q 037469 337 VVPFGGFAWLARTDYEEPAKAMKLR 361 (429)
Q Consensus 337 i~P~g~~~~~~~~~y~~~A~~~Gl~ 361 (429)
..|+| .+- ...+++.+|+..|..
T Consensus 249 ~~p~G-i~~-t~~~l~~ia~~~g~~ 271 (421)
T cd01976 249 YNFFG-PTK-IAESLRKIAAYFDDE 271 (421)
T ss_pred cccCC-HHH-HHHHHHHHHHHhCch
Confidence 77887 432 356888888888864
No 83
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=32.32 E-value=1.5e+02 Score=30.81 Aligned_cols=57 Identities=19% Similarity=0.281 Sum_probs=36.8
Q ss_pred eEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeC---CCC---HHHHHHHh--ccCcEEEEech
Q 037469 263 RLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEA---NGN---LSRFAETV--NYCDVFLAVHG 319 (429)
Q Consensus 263 rlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~---~~~---~~q~~~l~--~sadVlVGvHG 319 (429)
|++++.-++-++.--.+++.+.|++.|.++.+.+. +-+ +++.++.+ +.+|++||+=|
T Consensus 33 ~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~IiaiGG 97 (383)
T PRK09860 33 RTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGG 97 (383)
T ss_pred EEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 55666654434433457899999999988766543 323 33333333 47899999988
No 84
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=31.67 E-value=1.5e+02 Score=31.20 Aligned_cols=58 Identities=17% Similarity=0.225 Sum_probs=38.0
Q ss_pred eEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeC---CCC---HHHHHHHh--ccCcEEEEechh
Q 037469 263 RLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEA---NGN---LSRFAETV--NYCDVFLAVHGA 320 (429)
Q Consensus 263 rlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~---~~~---~~q~~~l~--~sadVlVGvHGA 320 (429)
|++++.-++.++.--.+++.+.|++.|.++.+.+. +-+ +.+.++.+ +.+|++||+=|-
T Consensus 25 ~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGG 90 (414)
T cd08190 25 RVCLVTDPNLAQLPPVKVVLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFAKKGQFDAFVAVGGG 90 (414)
T ss_pred eEEEEECcchhhcchHHHHHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 56677655555543468899999999988876542 323 33433333 368999999664
No 85
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=31.36 E-value=1.6e+02 Score=30.13 Aligned_cols=57 Identities=19% Similarity=0.230 Sum_probs=37.0
Q ss_pred eEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeC---CCC---HHHHHHHh--ccCcEEEEech
Q 037469 263 RLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEA---NGN---LSRFAETV--NYCDVFLAVHG 319 (429)
Q Consensus 263 rlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~---~~~---~~q~~~l~--~sadVlVGvHG 319 (429)
|++++.-++.++.--.+++.+.|++.|.++.+++. +-+ +++.+..+ +.+|++||+=|
T Consensus 26 ~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGG 90 (370)
T cd08192 26 RPLIVTDPGLAALGLVARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGCDGVIAFGG 90 (370)
T ss_pred eEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 56666655544433357899999999998876542 333 33333333 46899999988
No 86
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=31.33 E-value=71 Score=30.98 Aligned_cols=42 Identities=7% Similarity=0.057 Sum_probs=30.3
Q ss_pred CCCHHHHHHHhccCcEEEEechhhhhhhcccCCCcEEEEEeeCC
Q 037469 298 NGNLSRFAETVNYCDVFLAVHGAAMTNMIFLPENAVFIQVVPFG 341 (429)
Q Consensus 298 ~~~~~q~~~l~~sadVlVGvHGAGLTN~lFl~pga~vIEi~P~g 341 (429)
..++.|.+.+++.||++||+-. |..|+-- --|.-+|-|++..
T Consensus 186 ~~~l~e~~~li~~~~l~I~~Ds-g~~HlA~-a~~~p~i~l~g~~ 227 (279)
T cd03789 186 KTSLRELAALLARADLVVTNDS-GPMHLAA-ALGTPTVALFGPT 227 (279)
T ss_pred CCCHHHHHHHHHhCCEEEeeCC-HHHHHHH-HcCCCEEEEECCC
Confidence 4689999999999999999964 4444442 2256677777544
No 87
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=30.69 E-value=77 Score=33.69 Aligned_cols=95 Identities=5% Similarity=0.044 Sum_probs=63.1
Q ss_pred CCeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeC-CCCHHHHHHHhccCcEEEEech-hh--hhhhcccCCCcEEEE
Q 037469 261 KPRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEA-NGNLSRFAETVNYCDVFLAVHG-AA--MTNMIFLPENAVFIQ 336 (429)
Q Consensus 261 ~prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~-~~~~~q~~~l~~sadVlVGvHG-AG--LTN~lFl~pga~vIE 336 (429)
+..+-+|.-.. .--+..|+.+.|++.|++|+..-+ +.+++++..+- +|..-|.+.+ ++ ++..|==+=|.-.++
T Consensus 197 ~~~VNiiG~~~--~~~d~~el~~lL~~~Gl~v~~~~~~~~s~eei~~~~-~A~lniv~~~~~~~~~a~~L~e~~GiP~~~ 273 (456)
T TIGR01283 197 VHDINLIGEFN--VAGEFWHVKPLLEKLGIRVLATITGDSRYAEVQTAH-RAKLNMVQCSKSMINLARKMEEKYGIPYFE 273 (456)
T ss_pred CCcEEEEcCCC--CcccHHHHHHHHHHcCCeEEEEeCCCCcHHHHHhcc-cCcEEEEECHhHHHHHHHHHHHHcCCCEEe
Confidence 45566666322 233667999999999999986555 67899998766 5677665433 33 444442234777777
Q ss_pred EeeCCCCccccCcchHhHHhhCCC
Q 037469 337 VVPFGGFAWLARTDYEEPAKAMKL 360 (429)
Q Consensus 337 i~P~g~~~~~~~~~y~~~A~~~Gl 360 (429)
..|+| .+. ...+++.+|+..|.
T Consensus 274 ~~~~G-~~~-T~~~L~~Ia~~lg~ 295 (456)
T TIGR01283 274 GSFYG-IED-TSKALRDIADLFGD 295 (456)
T ss_pred cCCCc-HHH-HHHHHHHHHHHhCC
Confidence 67777 443 25678888888884
No 88
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=30.51 E-value=1.2e+02 Score=24.90 Aligned_cols=40 Identities=10% Similarity=0.259 Sum_probs=28.9
Q ss_pred CHHHHHHHHHhcCCEEEEe--eC--CCCHHHHHHHhccCcEEEE
Q 037469 277 NAEEIAQMGRRLGFNVVVA--EA--NGNLSRFAETVNYCDVFLA 316 (429)
Q Consensus 277 Ne~ev~~~l~~~Gf~V~v~--e~--~~~~~q~~~l~~sadVlVG 316 (429)
+++++.+.+++.|++.... +. ...-.++...+.+||++|=
T Consensus 11 ~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv 54 (97)
T PF10087_consen 11 RERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIV 54 (97)
T ss_pred cHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEE
Confidence 4577888899999998887 22 1233457778889999873
No 89
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=30.16 E-value=91 Score=28.69 Aligned_cols=51 Identities=22% Similarity=0.386 Sum_probs=38.4
Q ss_pred HHHHHHHHhcCCEEEEeeC--CCCHHHHHHHh-ccCcEEEEechhh---hhhhcccC
Q 037469 279 EEIAQMGRRLGFNVVVAEA--NGNLSRFAETV-NYCDVFLAVHGAA---MTNMIFLP 329 (429)
Q Consensus 279 ~ev~~~l~~~Gf~V~v~e~--~~~~~q~~~l~-~sadVlVGvHGAG---LTN~lFl~ 329 (429)
+++.+..++.|++|..++. ...++++...+ +.+-|++|.-|+| |.|.+.-.
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLKGKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhh
Confidence 5788889999999998886 35677776655 4566799999998 67777654
No 90
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=29.95 E-value=1e+02 Score=27.51 Aligned_cols=37 Identities=24% Similarity=0.369 Sum_probs=19.3
Q ss_pred HHHHHHHHhcCCEEEEeeC-CCCHHHHHHHhccCcEEE
Q 037469 279 EEIAQMGRRLGFNVVVAEA-NGNLSRFAETVNYCDVFL 315 (429)
Q Consensus 279 ~ev~~~l~~~Gf~V~v~e~-~~~~~q~~~l~~sadVlV 315 (429)
+++.++++++|++|..++. +.+-++..+.+++||++.
T Consensus 3 ~~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~~ad~I~ 40 (154)
T PF03575_consen 3 EKFRKAFRKLGFEVDQLDLSDRNDADILEAIREADAIF 40 (154)
T ss_dssp HHHHHHHHHCT-EEEECCCTSCGHHHHHHHHHHSSEEE
T ss_pred HHHHHHHHHCCCEEEEEeccCCChHHHHHHHHhCCEEE
Confidence 3455566666666655554 233445555555666554
No 91
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=29.73 E-value=1.7e+02 Score=26.60 Aligned_cols=63 Identities=16% Similarity=0.188 Sum_probs=35.2
Q ss_pred CCeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeCC-CCHHHHHHHhccC-----cEEEEechhhhhh
Q 037469 261 KPRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEAN-GNLSRFAETVNYC-----DVFLAVHGAAMTN 324 (429)
Q Consensus 261 ~prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~~-~~~~q~~~l~~sa-----dVlVGvHGAGLTN 324 (429)
..++++++|++... ....+.++.+++.|-+|.+...+ .+-++..+++..+ .|=-=+|+||...
T Consensus 25 ~~~~il~~r~~~~~-~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~~i~gVih~ag~~~ 93 (181)
T PF08659_consen 25 ARRLILLGRSGAPS-AEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRFGPIDGVIHAAGVLA 93 (181)
T ss_dssp -SEEEEEESSGGGS-TTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTSS-EEEEEE------
T ss_pred CCEEEEeccCCCcc-HHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhccCCcceeeeeeeeec
Confidence 45788999984111 12236888888889898877765 4566666666554 4666789988754
No 92
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=29.69 E-value=1e+02 Score=31.13 Aligned_cols=68 Identities=21% Similarity=0.259 Sum_probs=41.5
Q ss_pred eEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeCCCCHHHHHHHhccCcEEEEechhhh----hhhcccCCCcEEEEEe
Q 037469 263 RLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEANGNLSRFAETVNYCDVFLAVHGAAM----TNMIFLPENAVFIQVV 338 (429)
Q Consensus 263 rlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~~~~~~q~~~l~~sadVlVGvHGAGL----TN~lFl~pga~vIEi~ 338 (429)
++.+.+|+ -.+.+++++.+++.|++++..+ +.+ +.+..|||++..-.+.- -..=|++||+.|+-|=
T Consensus 155 ~v~v~~r~----~~~~~~~~~~~~~~~~~v~~~~---~~~---~av~~aDii~taT~s~~~~P~~~~~~l~~g~hi~~iG 224 (313)
T PF02423_consen 155 EVRVYSRS----PERAEAFAARLRDLGVPVVAVD---SAE---EAVRGADIIVTATPSTTPAPVFDAEWLKPGTHINAIG 224 (313)
T ss_dssp EEEEE-SS----HHHHHHHHHHHHCCCTCEEEES---SHH---HHHTTSSEEEE----SSEEESB-GGGS-TT-EEEE-S
T ss_pred EEEEEccC----hhHHHHHHHhhccccccceecc---chh---hhcccCCEEEEccCCCCCCccccHHHcCCCcEEEEec
Confidence 45566654 3445788888888888887665 444 34679999999988876 5556899999987764
Q ss_pred eC
Q 037469 339 PF 340 (429)
Q Consensus 339 P~ 340 (429)
.+
T Consensus 225 s~ 226 (313)
T PF02423_consen 225 SY 226 (313)
T ss_dssp -S
T ss_pred CC
Confidence 43
No 93
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=29.48 E-value=3.5e+02 Score=25.40 Aligned_cols=89 Identities=11% Similarity=0.144 Sum_probs=55.1
Q ss_pred cCHHHHHHHHHhc----CCEEEEeeC---CCCH---HHHHHHhcc----CcEEEEechhhh---------hhhcccCCCc
Q 037469 276 TNAEEIAQMGRRL----GFNVVVAEA---NGNL---SRFAETVNY----CDVFLAVHGAAM---------TNMIFLPENA 332 (429)
Q Consensus 276 ~Ne~ev~~~l~~~----Gf~V~v~e~---~~~~---~q~~~l~~s----adVlVGvHGAGL---------TN~lFl~pga 332 (429)
.+.+++.+++++. ..+.+++.. ..++ +++...+.. .-|+.-++|.+. ++.+||.|++
T Consensus 13 ~s~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~~~~~l~~~i~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a 92 (207)
T TIGR00706 13 VSPEDFDKKIKRIKDDKSIKALLLRINSPGGTVVASEEIYEKLKKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGT 92 (207)
T ss_pred cCHHHHHHHHHHHhhCCCccEEEEEecCCCCCHHHHHHHHHHHHHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCC
Confidence 4566777777654 344444443 2222 344444433 457777777554 6778889987
Q ss_pred EEEEEeeCCCCccccCcchHhHHhhCCCeEEEEEeec
Q 037469 333 VFIQVVPFGGFAWLARTDYEEPAKAMKLRYLEYKIKL 369 (429)
Q Consensus 333 ~vIEi~P~g~~~~~~~~~y~~~A~~~Gl~Y~~y~i~~ 369 (429)
.|=-+=+.. ...+|..+...+|+++..++.+.
T Consensus 93 ~vg~iGv~~-----~~~~~~~~l~k~Gv~~~~~~~g~ 124 (207)
T TIGR00706 93 ITGSIGVIL-----QGANVEKLYEKLGIEFEVIKSGE 124 (207)
T ss_pred eEEeeeEEE-----ecCCHHHHHHhCCceEEEEEcCC
Confidence 654432221 24568999999999999888653
No 94
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=28.99 E-value=1.2e+02 Score=27.13 Aligned_cols=58 Identities=17% Similarity=0.243 Sum_probs=37.1
Q ss_pred ccccCHHHHHHHHHhcCCEEEEeeC-CCC---H-HHHHHHhc--cCcEEEEechhhhhhhcccCC
Q 037469 273 RAFTNAEEIAQMGRRLGFNVVVAEA-NGN---L-SRFAETVN--YCDVFLAVHGAAMTNMIFLPE 330 (429)
Q Consensus 273 R~i~Ne~ev~~~l~~~Gf~V~v~e~-~~~---~-~q~~~l~~--sadVlVGvHGAGLTN~lFl~p 330 (429)
..=.|..-+.+.+++.|+++..... .-+ + +.+....+ .+|++|..=|+|.+.-=|.++
T Consensus 17 i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s~g~~D~t~~ 81 (152)
T cd00886 17 AEDRSGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTGLAPRDVTPE 81 (152)
T ss_pred CccchHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCcCcHH
Confidence 3344556678889999999875443 122 3 23344555 799999998888765544443
No 95
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=28.56 E-value=99 Score=27.37 Aligned_cols=51 Identities=22% Similarity=0.271 Sum_probs=35.4
Q ss_pred cccCHHHHHHHHHhcCCEEEEeeC--C-C-CH-HHHHHHhccCcEEEEechhhhhh
Q 037469 274 AFTNAEEIAQMGRRLGFNVVVAEA--N-G-NL-SRFAETVNYCDVFLAVHGAAMTN 324 (429)
Q Consensus 274 ~i~Ne~ev~~~l~~~Gf~V~v~e~--~-~-~~-~q~~~l~~sadVlVGvHGAGLTN 324 (429)
.=.|..-+.+.+++.|+++..... + . .+ +.+.++.+.+|++|-.=|+|.+.
T Consensus 25 ~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttGG~g~g~ 80 (144)
T TIGR00177 25 YDSNGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTGGTGVGP 80 (144)
T ss_pred EeCcHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECCCCCCCC
Confidence 345677888999999999875543 2 1 23 33444556899999988877654
No 96
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=28.37 E-value=1.8e+02 Score=27.26 Aligned_cols=60 Identities=20% Similarity=0.153 Sum_probs=40.3
Q ss_pred CCCeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeC-C-CCHHHHHHHhccCcEEEEech
Q 037469 260 KKPRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEA-N-GNLSRFAETVNYCDVFLAVHG 319 (429)
Q Consensus 260 ~~prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~-~-~~~~q~~~l~~sadVlVGvHG 319 (429)
..+++++|.-...-.=...++..+++++.|++++.+.. + .+-+++.+.+.+||+++=.=|
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG 89 (210)
T cd03129 28 AGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGG 89 (210)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCC
Confidence 57899999876421223346788888999998875553 2 344677778889998764434
No 97
>PRK03094 hypothetical protein; Provisional
Probab=27.69 E-value=91 Score=25.54 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=17.2
Q ss_pred CHHHHHHHHHhcCCEEEEeeC
Q 037469 277 NAEEIAQMGRRLGFNVVVAEA 297 (429)
Q Consensus 277 Ne~ev~~~l~~~Gf~V~v~e~ 297 (429)
+...|.+.|++.||+|+-++.
T Consensus 9 ~Ls~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 9 SLTDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred CcHHHHHHHHHCCCEEEecCc
Confidence 457799999999999986653
No 98
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=27.24 E-value=75 Score=28.20 Aligned_cols=38 Identities=21% Similarity=0.184 Sum_probs=25.1
Q ss_pred HHHHHHHhcCCEEEEeeCCCCHHHHHHHhccCcE-EEEe
Q 037469 280 EIAQMGRRLGFNVVVAEANGNLSRFAETVNYCDV-FLAV 317 (429)
Q Consensus 280 ev~~~l~~~Gf~V~v~e~~~~~~q~~~l~~sadV-lVGv 317 (429)
-+..+|+..||+|+-+..+.+.+++++....-++ +||+
T Consensus 18 iv~~~L~~~GfeVidLG~~v~~e~~v~aa~~~~adiVgl 56 (128)
T cd02072 18 ILDHAFTEAGFNVVNLGVLSPQEEFIDAAIETDADAILV 56 (128)
T ss_pred HHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE
Confidence 3556778889999866556787877766555343 3443
No 99
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=26.76 E-value=83 Score=33.67 Aligned_cols=96 Identities=9% Similarity=0.144 Sum_probs=63.5
Q ss_pred CCeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeC-CCCHHHHHHHhccCcEEEEech--hh-hhhhcccCCCcEEEE
Q 037469 261 KPRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEA-NGNLSRFAETVNYCDVFLAVHG--AA-MTNMIFLPENAVFIQ 336 (429)
Q Consensus 261 ~prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~-~~~~~q~~~l~~sadVlVGvHG--AG-LTN~lFl~pga~vIE 336 (429)
+..+-+|. ....--|..|+.+.|++.|++++..-+ +.+++++..+- +|..=|-+.+ ++ ++..|-=+=|.-.++
T Consensus 201 ~~~VNiiG--~~~~~gd~~el~~lL~~~Gi~v~~~~~g~~t~~ei~~~~-~A~lnlv~~~~~~~~~A~~Leer~GiP~~~ 277 (461)
T TIGR01860 201 EYTINVIG--DYNIQGDTQVLQKYWDKMGIQVIAHFTGNGTYDDLRCMH-RAQLNVVNCARSAGYIANELKKRYGIPRLD 277 (461)
T ss_pred CCcEEEEC--CCCCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHhcc-cCcEEEEECchHHHHHHHHHHHHhCCCeec
Confidence 34566664 233345678999999999999975333 68999998865 5566444332 22 444443345777778
Q ss_pred EeeCCCCccccCcchHhHHhhCCCe
Q 037469 337 VVPFGGFAWLARTDYEEPAKAMKLR 361 (429)
Q Consensus 337 i~P~g~~~~~~~~~y~~~A~~~Gl~ 361 (429)
+-|+| ++. ...+.+.+|+..|+.
T Consensus 278 ~~p~G-i~~-T~~~L~~la~~~g~~ 300 (461)
T TIGR01860 278 VDTWG-FNY-MAEALRKIGAFFGIE 300 (461)
T ss_pred CCcCC-HHH-HHHHHHHHHHHhCCc
Confidence 77887 443 256788899888864
No 100
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=26.59 E-value=1.4e+02 Score=28.26 Aligned_cols=60 Identities=17% Similarity=0.130 Sum_probs=39.5
Q ss_pred CCCCeEEEEecCCCccccCHHHHHHHHHhc-CCEEEEeeCCCCHHHHHHHhccCcEEEEech
Q 037469 259 KKKPRLLIVSRKRTRAFTNAEEIAQMGRRL-GFNVVVAEANGNLSRFAETVNYCDVFLAVHG 319 (429)
Q Consensus 259 ~~~prlliisR~~~R~i~Ne~ev~~~l~~~-Gf~V~v~e~~~~~~q~~~l~~sadVlVGvHG 319 (429)
+.+++++||.-...-.=.-.+.+.+++++. |+++..+.. .+-++..+.+.+||+++=.=|
T Consensus 29 ~~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~-~~~~~~~~~l~~ad~I~l~GG 89 (212)
T cd03146 29 KARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHL-FDTEDPLDALLEADVIYVGGG 89 (212)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEec-cCcccHHHHHhcCCEEEECCc
Confidence 467899999987541112235577888899 999987764 223444556668898765434
No 101
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=26.38 E-value=2e+02 Score=30.02 Aligned_cols=57 Identities=11% Similarity=0.134 Sum_probs=34.5
Q ss_pred eEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeC---CCC---HHHHHHHh--ccCcEEEEech
Q 037469 263 RLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEA---NGN---LSRFAETV--NYCDVFLAVHG 319 (429)
Q Consensus 263 rlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~---~~~---~~q~~~l~--~sadVlVGvHG 319 (429)
+++++..++-++.-=.+++.+.|++.|.++.+.+. +-+ +++.++.+ .++|++||+=|
T Consensus 51 ~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~IiavGG 115 (395)
T PRK15454 51 HLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVIAFGG 115 (395)
T ss_pred EEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCEEEEeCC
Confidence 55666543322211147799999999988876532 323 33333222 47899999977
No 102
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=26.37 E-value=80 Score=33.33 Aligned_cols=98 Identities=17% Similarity=0.164 Sum_probs=62.4
Q ss_pred CCCeEEEEecCCCccccCHHHHHHHHHhcCCEEEEee-----------------C-CCCHHHHHHHhccCcEEEEech-h
Q 037469 260 KKPRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAE-----------------A-NGNLSRFAETVNYCDVFLAVHG-A 320 (429)
Q Consensus 260 ~~prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e-----------------~-~~~~~q~~~l~~sadVlVGvHG-A 320 (429)
.++++-+|.-..+. --|.+|+.+.|++.|++++.+- + +.+++++..+- +|..-|.++. .
T Consensus 159 ~~~~VNli~~~~~~-~d~~~el~~lL~~~Gl~~~~~~d~s~~~d~~~~~~~~~~~gg~~~~~i~~~~-~A~~niv~~~~~ 236 (435)
T cd01974 159 KNGKLNIIPGFDTY-AGNMREIKRLLELMGVDYTILPDTSDVLDTPADGEYRMYPGGTTLEELKDAG-NAKATLALQEYA 236 (435)
T ss_pred CCCeEEEECCCCCC-cchHHHHHHHHHHcCCCEEEecccccccCCCCCCCccccCCCCCHHHHHhhc-cCcEEEEECccc
Confidence 34566566422221 1268999999999999997632 1 46899998865 5677665543 2
Q ss_pred hhhhhcccC--CCcEEEEE-eeCCCCccccCcchHhHHhhCCCe
Q 037469 321 AMTNMIFLP--ENAVFIQV-VPFGGFAWLARTDYEEPAKAMKLR 361 (429)
Q Consensus 321 GLTN~lFl~--pga~vIEi-~P~g~~~~~~~~~y~~~A~~~Gl~ 361 (429)
|..=.-+|. =|.-.+.. .|.| .+- ...+++.+|+..|..
T Consensus 237 ~~~~a~~Le~~~giP~~~~~~p~G-~~~-t~~~l~~l~~~~g~~ 278 (435)
T cd01974 237 TEKTAKFLEKKCKVPVETLNMPIG-VAA-TDEFLMALSELTGKP 278 (435)
T ss_pred cHHHHHHHHHHhCCCeeecCCCcC-hHH-HHHHHHHHHHHhCCC
Confidence 333333443 46667776 5888 432 356888999888865
No 103
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=26.02 E-value=1.2e+02 Score=32.61 Aligned_cols=95 Identities=14% Similarity=0.071 Sum_probs=63.0
Q ss_pred CCeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeC-CCCHHHHHHHhccCcEEEEechhhhh-hhcccC--CCcEEEE
Q 037469 261 KPRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEA-NGNLSRFAETVNYCDVFLAVHGAAMT-NMIFLP--ENAVFIQ 336 (429)
Q Consensus 261 ~prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~-~~~~~q~~~l~~sadVlVGvHGAGLT-N~lFl~--pga~vIE 336 (429)
+.++-+|. +...--|..|+.+.|++.|++++..-+ +.+++++..+- +|..-|.+...++. =.=+|. =|.-.++
T Consensus 207 ~~~VNiiG--~~~~~gd~~eik~lL~~~Gi~v~~~~sg~~t~~~i~~~~-~A~lniv~~~~~~~~~A~~Le~~fGiP~~~ 283 (466)
T TIGR01282 207 PYDVAIIG--DYNIGGDAWESRILLEEIGLRVVAQWSGDGTLNEMENAP-KAKLNLIHCYRSMNYISRHMEEKYGIPWME 283 (466)
T ss_pred CCeEEEEe--cCCCcccHHHHHHHHHHcCCeEEEEECCCCCHHHHHhcc-cCCEEEEEChHHHHHHHHHHHHHhCCceEe
Confidence 45666665 222234778999999999999985333 68999998865 66776666332221 133443 3777788
Q ss_pred EeeCCCCccccCcchHhHHhhCCC
Q 037469 337 VVPFGGFAWLARTDYEEPAKAMKL 360 (429)
Q Consensus 337 i~P~g~~~~~~~~~y~~~A~~~Gl 360 (429)
+-|+| .+. ...+++.+|+..|.
T Consensus 284 ~~~~G-i~~-T~~~Lr~ia~~~g~ 305 (466)
T TIGR01282 284 YNFFG-PTK-IAESLRKIAEFFDD 305 (466)
T ss_pred CCCCC-HHH-HHHHHHHHHHHHCc
Confidence 77887 443 25678888888874
No 104
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=25.86 E-value=1.8e+02 Score=25.31 Aligned_cols=52 Identities=17% Similarity=0.305 Sum_probs=31.9
Q ss_pred eEEEEecCCCccccCHH----HHHHHHHhcCCEEEEeeC-CC-----------------CHHHHHHHhccCcEEE
Q 037469 263 RLLIVSRKRTRAFTNAE----EIAQMGRRLGFNVVVAEA-NG-----------------NLSRFAETVNYCDVFL 315 (429)
Q Consensus 263 rlliisR~~~R~i~Ne~----ev~~~l~~~Gf~V~v~e~-~~-----------------~~~q~~~l~~sadVlV 315 (429)
++++|.=. .|.=-|-. ++.+.+++.|.++.+++. +. +++++...+.+||.+|
T Consensus 2 kilii~gS-~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI 75 (152)
T PF03358_consen 2 KILIINGS-PRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGII 75 (152)
T ss_dssp EEEEEESS-SSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEE
T ss_pred EEEEEECc-CCCCCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEE
Confidence 45555422 23334443 455555666999998887 42 2456677788899876
No 105
>KOG4698 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.50 E-value=17 Score=38.89 Aligned_cols=100 Identities=8% Similarity=0.102 Sum_probs=67.6
Q ss_pred ccccCHHHHHHHHHhcCCEEEEeeC--CCCHHHHHHHhccCcEEEEechhhhhhhcccCCCcEEEEEeeCCCCccccCcc
Q 037469 273 RAFTNAEEIAQMGRRLGFNVVVAEA--NGNLSRFAETVNYCDVFLAVHGAAMTNMIFLPENAVFIQVVPFGGFAWLARTD 350 (429)
Q Consensus 273 R~i~Ne~ev~~~l~~~Gf~V~v~e~--~~~~~q~~~l~~sadVlVGvHGAGLTN~lFl~pga~vIEi~P~g~~~~~~~~~ 350 (429)
+-++|+.+ +...++.-|-++...+ ++.+.+....+++.. +-+|+++..---|.+.+..+++-+|++ .+.....+
T Consensus 192 pL~it~~~-~~~n~ev~~li~~~~~ww~~kf~Dvv~~lSn~~--~v~~~~~~~ThcF~~~~vgL~~h~~y~-v~~t~~~~ 267 (475)
T KOG4698|consen 192 PLFITEAE-LRFNKEVQFLITETHSWWDMKFGDVVRQLSNYP--VVDFDAELRTHCFKEAIVGLVSHFPYA-VNPTQPPP 267 (475)
T ss_pred hhhcccch-hcccccEEEEEEEcchhhhhhHHHHHHhcCCCc--eEEecCCceEEEeeeeeeeeeeccccc-ccCCcCCC
Confidence 45666666 3333333332222222 467899999999988 889999999999999999999999998 55555667
Q ss_pred hHh--HHhhCCCeEEEEEeecCCCcccc
Q 037469 351 YEE--PAKAMKLRYLEYKIKLDESTLIQ 376 (429)
Q Consensus 351 y~~--~A~~~Gl~Y~~y~i~~~Essl~~ 376 (429)
|+. +-..+.+-|.+|....+|..+..
T Consensus 268 ~~~~s~~~fr~~l~~a~~~~i~~~~~t~ 295 (475)
T KOG4698|consen 268 NGTLSMLDFRNLLDKALSPRIPEANVTA 295 (475)
T ss_pred ccccccccHHHHHHHHhcccccccccCC
Confidence 743 33455666777765444555544
No 106
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=25.05 E-value=1.6e+02 Score=25.48 Aligned_cols=54 Identities=19% Similarity=0.257 Sum_probs=36.1
Q ss_pred ccCHHHHHHHHHhcCCEEEEeeC--C--CCH-HHHHHHhccCcEEEEechhhhhhhccc
Q 037469 275 FTNAEEIAQMGRRLGFNVVVAEA--N--GNL-SRFAETVNYCDVFLAVHGAAMTNMIFL 328 (429)
Q Consensus 275 i~Ne~ev~~~l~~~Gf~V~v~e~--~--~~~-~q~~~l~~sadVlVGvHGAGLTN~lFl 328 (429)
=.|-.-+.+.+++.|+++..... + ..+ +++.++.+++|++|--=|.|.+--=+.
T Consensus 18 d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittGG~g~g~~D~t 76 (133)
T cd00758 18 DTNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTTGGTGVGRRDVT 76 (133)
T ss_pred EchHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECCCCCCCCCcch
Confidence 34566788889999999875432 2 123 344556667999999988887643333
No 107
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=24.96 E-value=3.4e+02 Score=26.36 Aligned_cols=56 Identities=20% Similarity=0.361 Sum_probs=43.1
Q ss_pred HHHHHHHhc-CCEEEEeeCCC-------------CHHHHHHHhccCcEEEEechhh-hhhhcccCCCcEEE
Q 037469 280 EIAQMGRRL-GFNVVVAEANG-------------NLSRFAETVNYCDVFLAVHGAA-MTNMIFLPENAVFI 335 (429)
Q Consensus 280 ev~~~l~~~-Gf~V~v~e~~~-------------~~~q~~~l~~sadVlVGvHGAG-LTN~lFl~pga~vI 335 (429)
++++++++. ++.++++.+.. +-.++..++.+||++||.=|-+ +..++.+..-+.+|
T Consensus 206 ~~~~~l~~~~~~~~~v~g~~~~~~~~~ni~~~~~~~~~~~~~m~~ad~vIs~~G~~t~~Ea~~~g~P~l~i 276 (318)
T PF13528_consen 206 DLIEALKALPDYQFIVFGPNAADPRPGNIHVRPFSTPDFAELMAAADLVISKGGYTTISEALALGKPALVI 276 (318)
T ss_pred HHHHHHHhCCCCeEEEEcCCcccccCCCEEEeecChHHHHHHHHhCCEEEECCCHHHHHHHHHcCCCEEEE
Confidence 788888887 47776664311 1267888999999999999999 88999988777653
No 108
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=24.75 E-value=2.1e+02 Score=26.10 Aligned_cols=77 Identities=31% Similarity=0.428 Sum_probs=39.7
Q ss_pred CeEEEEecCCCccccCHHHHHHHHHhcC--CEEEEeeCCCC---HHHHHHHhc--cCcEEEEech--hhhhhhcccCCCc
Q 037469 262 PRLLIVSRKRTRAFTNAEEIAQMGRRLG--FNVVVAEANGN---LSRFAETVN--YCDVFLAVHG--AAMTNMIFLPENA 332 (429)
Q Consensus 262 prlliisR~~~R~i~Ne~ev~~~l~~~G--f~V~v~e~~~~---~~q~~~l~~--sadVlVGvHG--AGLTN~lFl~pga 332 (429)
|++.+|.=. ..-+-=-+|..+.|++.| |++.+...+-+ +.++.+..+ .+||+|++=| |+|..++=--...
T Consensus 1 p~V~Ii~gs-~SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lpgvva~~t~~ 79 (150)
T PF00731_consen 1 PKVAIIMGS-TSDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSAALPGVVASLTTL 79 (150)
T ss_dssp -EEEEEESS-GGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS--HHHHHHHHSSS
T ss_pred CeEEEEeCC-HHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcccchhhheeccCC
Confidence 566666533 223333477888888887 56777776555 344444443 4789988755 2222222222235
Q ss_pred EEEEEeeC
Q 037469 333 VFIQVVPF 340 (429)
Q Consensus 333 ~vIEi~P~ 340 (429)
-||=+ |.
T Consensus 80 PVIgv-P~ 86 (150)
T PF00731_consen 80 PVIGV-PV 86 (150)
T ss_dssp -EEEE-EE
T ss_pred CEEEe-ec
Confidence 56665 44
No 109
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=24.69 E-value=2.4e+02 Score=28.97 Aligned_cols=57 Identities=23% Similarity=0.297 Sum_probs=36.6
Q ss_pred eEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeC---CCC---HHHHHHHh--ccCcEEEEech
Q 037469 263 RLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEA---NGN---LSRFAETV--NYCDVFLAVHG 319 (429)
Q Consensus 263 rlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~---~~~---~~q~~~l~--~sadVlVGvHG 319 (429)
|++++.-++.++.--.+++.+.|++.|.++.+++. +-+ +++.+..+ ..+|++||+=|
T Consensus 28 ~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGG 92 (374)
T cd08189 28 KVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRENGCDAILAVGG 92 (374)
T ss_pred eEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 56666655444422247889999999988876543 333 33444333 46899999988
No 110
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=24.40 E-value=83 Score=33.17 Aligned_cols=96 Identities=9% Similarity=0.081 Sum_probs=61.4
Q ss_pred CCeEEEEecCCCccccCHHHHHHHHHhcCCEEEEee-------------------CCCCHHHHHHHhccCcE--EEEe-c
Q 037469 261 KPRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAE-------------------ANGNLSRFAETVNYCDV--FLAV-H 318 (429)
Q Consensus 261 ~prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e-------------------~~~~~~q~~~l~~sadV--lVGv-H 318 (429)
+.++-+|.... ---|.+|+.+.+++.|.+++.+- .+.+++++.++- +|+. +++. +
T Consensus 155 ~~~VNlig~~~--~~~D~~ei~~lL~~~Gl~~~~~~d~s~~~~~~~~~~~~~~~~~g~~~~~i~~~~-~A~lniv~~~~~ 231 (429)
T cd03466 155 IEKINVIAGMM--SPADIREIKEILREFGIEYILLPDTSETLDGPFWGEYHRLPSGGTPISEIKGMG-GAKATIELGMFV 231 (429)
T ss_pred CCcEEEECCCC--ChhHHHHHHHHHHHcCCCeEEecCccccccCCCCCCcceeCCCCCCHHHHHhhc-cCcEEEEEccCc
Confidence 45566665432 23477999999999999996522 145799998866 4444 5554 2
Q ss_pred hhhhh--hhcccCCCcEEEEE-eeCCCCccccCcchHhHHhhCCCe
Q 037469 319 GAAMT--NMIFLPENAVFIQV-VPFGGFAWLARTDYEEPAKAMKLR 361 (429)
Q Consensus 319 GAGLT--N~lFl~pga~vIEi-~P~g~~~~~~~~~y~~~A~~~Gl~ 361 (429)
+.|+. ..|-=+=|.-.+.. +|.| .+. ...+++.+++..|..
T Consensus 232 ~~g~~~A~~L~e~~giP~~~~~~P~G-~~~-t~~~l~~l~~~~g~~ 275 (429)
T cd03466 232 DHGLSAGSYLEEEFGIPNYRLPLPIG-LRA-TDEFMSLLSKLTGKP 275 (429)
T ss_pred cchHHHHHHHHHHHCCCeeecCCCcC-hHH-HHHHHHHHHHHHCCC
Confidence 45544 44444446655544 7888 443 356888998888864
No 111
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=24.33 E-value=2.4e+02 Score=29.12 Aligned_cols=57 Identities=18% Similarity=0.279 Sum_probs=37.5
Q ss_pred eEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeC---CCCH---HHHHHHh--ccCcEEEEech
Q 037469 263 RLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEA---NGNL---SRFAETV--NYCDVFLAVHG 319 (429)
Q Consensus 263 rlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~---~~~~---~q~~~l~--~sadVlVGvHG 319 (429)
|++++.-++.++.--.+++.+.|++.|.++.+.+. +-++ ++.++.+ +++|++||+=|
T Consensus 31 r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGG 95 (379)
T TIGR02638 31 KALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIAIGG 95 (379)
T ss_pred EEEEEcCcchhhccchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 56677655444433457899999999988877543 3333 3444443 36899999988
No 112
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=24.33 E-value=2.2e+02 Score=23.79 Aligned_cols=32 Identities=19% Similarity=0.203 Sum_probs=19.7
Q ss_pred HHHHHHHHhcCCEEEEeeCCCCHHHHHHHhcc
Q 037469 279 EEIAQMGRRLGFNVVVAEANGNLSRFAETVNY 310 (429)
Q Consensus 279 ~ev~~~l~~~Gf~V~v~e~~~~~~q~~~l~~s 310 (429)
.=+...+++.||+|+....+.+.+++...+.+
T Consensus 17 ~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~ 48 (119)
T cd02067 17 NIVARALRDAGFEVIDLGVDVPPEEIVEAAKE 48 (119)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH
Confidence 33455667778888766656666666554444
No 113
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=24.30 E-value=1.2e+02 Score=31.88 Aligned_cols=94 Identities=16% Similarity=0.171 Sum_probs=59.0
Q ss_pred CCeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeCCCCHHHHHHHhccCcEEEEec--hhhhhhhcccCCCcEEEEE-
Q 037469 261 KPRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEANGNLSRFAETVNYCDVFLAVH--GAAMTNMIFLPENAVFIQV- 337 (429)
Q Consensus 261 ~prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~~~~~~q~~~l~~sadVlVGvH--GAGLTN~lFl~pga~vIEi- 337 (429)
+.++.++.--. .-+..|+.+.|++.|++++.+=++.++++...+-. +..++..+ +...+..| =+-|...+..
T Consensus 166 ~~~VniiG~~~---~~d~~el~~lL~~~Gi~v~~~lp~~~~~d~~~~~~-~~~~~~~~~~~~~~A~~L-~~~GiP~~~~~ 240 (427)
T PRK02842 166 HPSLVLVGSLA---DVVEDQLTLEFKKLGIGVVGFLPARRFTELPAIGP-GTVVALAQPFLSDTARAL-RERGAKVLTAP 240 (427)
T ss_pred CCcEEEEEeCC---cchHHHHHHHHHHcCCeeEEEeCCccHHHHhhcCc-CcEEEEeCHHHHHHHHHH-HHcCCccccCC
Confidence 34556665432 35568999999999999973435566777665433 34444444 44555555 4557666655
Q ss_pred eeCCCCccccCcchHhHHhhCCCe
Q 037469 338 VPFGGFAWLARTDYEEPAKAMKLR 361 (429)
Q Consensus 338 ~P~g~~~~~~~~~y~~~A~~~Gl~ 361 (429)
+|+| .+- ...+++.+|+..|+.
T Consensus 241 ~P~G-~~~-T~~~L~~la~~~g~~ 262 (427)
T PRK02842 241 FPLG-PEG-TRAWLEAAAAAFGID 262 (427)
T ss_pred CCcC-hHH-HHHHHHHHHHHhCcC
Confidence 7888 332 356788899888864
No 114
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=23.96 E-value=1.5e+02 Score=28.10 Aligned_cols=47 Identities=21% Similarity=0.258 Sum_probs=36.9
Q ss_pred cccCHHHHHHHHHhcCCEEEEeeCCCCHHHHHHHhccC---cEEEEechhh
Q 037469 274 AFTNAEEIAQMGRRLGFNVVVAEANGNLSRFAETVNYC---DVFLAVHGAA 321 (429)
Q Consensus 274 ~i~Ne~ev~~~l~~~Gf~V~v~e~~~~~~q~~~l~~sa---dVlVGvHGAG 321 (429)
.+.|. +-++.+++.|++-++++++++++|+.++.+.+ ++=|=|||..
T Consensus 46 nv~N~-~s~~~~~~~G~~~i~ls~EL~~~ei~~i~~~~~~~~~Ev~v~G~~ 95 (233)
T PF01136_consen 46 NVFNS-ESARFLKELGASRITLSPELSLEEIKEIAENSPGVPLEVIVHGNL 95 (233)
T ss_pred cCCCH-HHHHHHHHcCCCEEEECccCCHHHHHHHHHhCCCCeEEEEEeCCc
Confidence 34444 45566777899999999999999999888877 6788888886
No 115
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=23.84 E-value=1.9e+02 Score=26.80 Aligned_cols=32 Identities=16% Similarity=0.365 Sum_probs=21.9
Q ss_pred HHhccCcEEEEechh----hhhhhcccCCCcEEEEE
Q 037469 306 ETVNYCDVFLAVHGA----AMTNMIFLPENAVFIQV 337 (429)
Q Consensus 306 ~l~~sadVlVGvHGA----GLTN~lFl~pga~vIEi 337 (429)
..+..+|++|..-|. ..-++--|++|+.|.-+
T Consensus 74 ~a~~~adi~vtaTG~~~vi~~e~~~~mkdgail~n~ 109 (162)
T PF00670_consen 74 EALRDADIFVTATGNKDVITGEHFRQMKDGAILANA 109 (162)
T ss_dssp HHTTT-SEEEE-SSSSSSB-HHHHHHS-TTEEEEES
T ss_pred HHHhhCCEEEECCCCccccCHHHHHHhcCCeEEecc
Confidence 456789999999996 34567779999998654
No 116
>COG1910 Periplasmic molybdate-binding protein/domain [Inorganic ion transport and metabolism]
Probab=23.69 E-value=40 Score=32.72 Aligned_cols=66 Identities=20% Similarity=0.265 Sum_probs=44.2
Q ss_pred eEEEEecC---CCccccCHHHHHHHHHhc-----CCEEEEeeCCCCHHHHHHHhccCcEEEEe-chhhhhhhcccCCCc
Q 037469 263 RLLIVSRK---RTRAFTNAEEIAQMGRRL-----GFNVVVAEANGNLSRFAETVNYCDVFLAV-HGAAMTNMIFLPENA 332 (429)
Q Consensus 263 rlliisR~---~~R~i~Ne~ev~~~l~~~-----Gf~V~v~e~~~~~~q~~~l~~sadVlVGv-HGAGLTN~lFl~pga 332 (429)
++.+|.|+ |+|.++ |+.+...+.. ||+-.... +.++++.++ ...||+=||+ |+|-.-|+=|-|=+.
T Consensus 99 d~~fVNR~rGSGTR~Ll--D~~L~~~~~~~~~I~GY~~e~~t-h~avA~aVa-~G~AD~GvGlr~~A~~~gL~Fipl~~ 173 (223)
T COG1910 99 DLRFVNRNRGSGTRILL--DELLGELNILPDSIKGYSDEATT-HDAVASAVA-SGRADAGVGLRHAAEKYGLDFIPLGD 173 (223)
T ss_pred CcEEEecCCCccHHHHH--HHHHHHcCcCchhcCCccccccc-cHHHHHHHH-cCCCCccccHHHHHHHcCCceEEccc
Confidence 34688888 479888 5566665443 77665333 355666654 4678998886 788888887776653
No 117
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=23.63 E-value=1.1e+02 Score=33.45 Aligned_cols=95 Identities=14% Similarity=0.125 Sum_probs=62.8
Q ss_pred CeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeC-CCCHHHHHHHhccCcEEEEech-hh--hhhhcccCCCcEEEEE
Q 037469 262 PRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEA-NGNLSRFAETVNYCDVFLAVHG-AA--MTNMIFLPENAVFIQV 337 (429)
Q Consensus 262 prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~-~~~~~q~~~l~~sadVlVGvHG-AG--LTN~lFl~pga~vIEi 337 (429)
.++-||.= .----|..|+.+.|++.|.+|+..-. +.+++++..+- +|.+=|-+.+ ++ ++..|=-+=|.-.+++
T Consensus 203 ~~VNliG~--~n~~gD~~eik~lLe~~Gl~v~~~~~gg~t~~ei~~~~-~A~lniv~~~~~~~~~A~~Leer~GiP~~~~ 279 (513)
T TIGR01861 203 HVINYVGE--YNIQGDQEVMVDYFQRMGIQVLSTFTGNGSYDDLRGMH-RAHLNVLECARSAEYICNELRKRYGIPRLDI 279 (513)
T ss_pred CeEEEeCC--CCCccCHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhhc-cCCEEEEECHHHHHHHHHHHHHHhCCCeEec
Confidence 34555542 12344678899999999999985555 78999998876 5566444433 33 3444444457778888
Q ss_pred eeCCCCccccCcchHhHHhhCCCe
Q 037469 338 VPFGGFAWLARTDYEEPAKAMKLR 361 (429)
Q Consensus 338 ~P~g~~~~~~~~~y~~~A~~~Gl~ 361 (429)
-|+| ++- ...+-+.+|+..|+.
T Consensus 280 ~~~G-i~~-Td~~Lr~la~~~g~~ 301 (513)
T TIGR01861 280 DGFG-FEP-LAASLRKVAMFFGIE 301 (513)
T ss_pred CcCC-HHH-HHHHHHHHHHHhCCC
Confidence 8887 432 245778889888854
No 118
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=23.60 E-value=1.3e+02 Score=31.26 Aligned_cols=95 Identities=14% Similarity=0.097 Sum_probs=60.9
Q ss_pred CCCeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeCCCCHHHHHHHhccCcEEEEechhhhhhhccc--CCCcEEEEE
Q 037469 260 KKPRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEANGNLSRFAETVNYCDVFLAVHGAAMTNMIFL--PENAVFIQV 337 (429)
Q Consensus 260 ~~prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~~~~~~q~~~l~~sadVlVGvHGAGLTN~lFl--~pga~vIEi 337 (429)
.+..+.++.--. ..+..|+.+.|++.|++++.+=++.+++++..+- .+.+.++.|..+..-+=.| +=|.-.+..
T Consensus 154 ~~~~VnliG~~~---~~d~~el~~lL~~~Gi~v~~~~~d~~~~~~~~~~-~a~~~~~~~~~~~~~A~~Le~r~giP~~~~ 229 (396)
T cd01979 154 PERSLVLVGSLP---DIVEDQLRRELEQLGIPVVGFLPPRRYTDLPVIG-PGTYVLGIQPFLSRTATTLMRRRKCKLLSA 229 (396)
T ss_pred CCCceEEEEeCC---cchHHHHHHHHHHcCCeEEEEeCCCChHHhhccC-cceEEEEeChhHHHHHHHHHHhcCCCcccC
Confidence 445666776532 2467899999999999997433466788876654 5677776665432223333 335545554
Q ss_pred -eeCCCCccccCcchHhHHhhCCC
Q 037469 338 -VPFGGFAWLARTDYEEPAKAMKL 360 (429)
Q Consensus 338 -~P~g~~~~~~~~~y~~~A~~~Gl 360 (429)
+|+| .+- ...+++.+|+..|.
T Consensus 230 ~~P~G-~~~-t~~~l~~la~~~g~ 251 (396)
T cd01979 230 PFPIG-PDG-TRAWLEAICSAFGI 251 (396)
T ss_pred CcCcC-hHH-HHHHHHHHHHHhCC
Confidence 7888 433 35678888888873
No 119
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=23.40 E-value=2.8e+02 Score=28.30 Aligned_cols=57 Identities=21% Similarity=0.294 Sum_probs=37.1
Q ss_pred eEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeC---CCC---HHHHHHHh--ccCcEEEEech
Q 037469 263 RLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEA---NGN---LSRFAETV--NYCDVFLAVHG 319 (429)
Q Consensus 263 rlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~---~~~---~~q~~~l~--~sadVlVGvHG 319 (429)
|++++..++..+..-.+++.+.|++.|.++.+.+. +-+ +++.++.+ +.+|++||+=|
T Consensus 25 ~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiGG 89 (370)
T cd08551 25 KALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVGG 89 (370)
T ss_pred eEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 55666655444433347899999998988776542 333 34444444 36899999988
No 120
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=23.26 E-value=1.5e+02 Score=31.15 Aligned_cols=59 Identities=15% Similarity=0.276 Sum_probs=38.5
Q ss_pred HHHHHHHHhcCCEEEEeeCC-------CCHHHHHHHhccCcEEE--Eech-------hhhhh---hcccCCCcEEEEE
Q 037469 279 EEIAQMGRRLGFNVVVAEAN-------GNLSRFAETVNYCDVFL--AVHG-------AAMTN---MIFLPENAVFIQV 337 (429)
Q Consensus 279 ~ev~~~l~~~Gf~V~v~e~~-------~~~~q~~~l~~sadVlV--GvHG-------AGLTN---~lFl~pga~vIEi 337 (429)
.++++.++..|++|...++. ..+..+..++..|||++ .+.- -||-| +==|+||+.+|-.
T Consensus 129 ~~vA~~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~ 206 (378)
T PRK15438 129 RRLQARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINA 206 (378)
T ss_pred HHHHHHHHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEEC
Confidence 46888889999999988751 12334556777899998 3321 12322 2337899988764
No 121
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=22.66 E-value=2.8e+02 Score=28.96 Aligned_cols=76 Identities=22% Similarity=0.319 Sum_probs=46.9
Q ss_pred HHHhcCCCccccccccCCCCCCCeEEEEecCC------------CccccCHHHHHHHHHhcCCEEEEeeC-CCC---H-H
Q 037469 240 IRSSYSLQKPAAIRLRDGEKKKPRLLIVSRKR------------TRAFTNAEEIAQMGRRLGFNVVVAEA-NGN---L-S 302 (429)
Q Consensus 240 l~~~y~l~~~~~~~l~~~~~~~prlliisR~~------------~R~i~Ne~ev~~~l~~~Gf~V~v~e~-~~~---~-~ 302 (429)
++...|+..-.. -++||+.+|+=.. ...=.|-.-+.+.+++.|+++..... .-+ + +
T Consensus 154 ~Las~Gi~~v~V-------~~~~rv~ii~tGdEl~~~g~~~~~g~i~dsn~~~l~~~l~~~G~~~~~~~~v~Dd~~~i~~ 226 (394)
T cd00887 154 LLASLGIAEVPV-------YRRPRVAIISTGDELVEPGEPLAPGQIYDSNSYMLAALLRELGAEVVDLGIVPDDPEALRE 226 (394)
T ss_pred HHHhCCCCEEEE-------ecCCEEEEEeCCCcccCCCCCCCCCEEEEChHHHHHHHHHHCCCEEEEeceeCCCHHHHHH
Confidence 444566654211 3678887776431 11225667788889999999875443 112 3 3
Q ss_pred HHHHHhccCcEEEEechhhh
Q 037469 303 RFAETVNYCDVFLAVHGAAM 322 (429)
Q Consensus 303 q~~~l~~sadVlVGvHGAGL 322 (429)
.+.++.+.+|++|..=|+|.
T Consensus 227 ~l~~a~~~~DliittGG~s~ 246 (394)
T cd00887 227 ALEEALEEADVVITSGGVSV 246 (394)
T ss_pred HHHHHhhCCCEEEEeCCCCC
Confidence 44455566999999988764
No 122
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=22.64 E-value=2.6e+02 Score=27.04 Aligned_cols=52 Identities=29% Similarity=0.430 Sum_probs=32.1
Q ss_pred CHHHHHHHHHhcCCEEEEeeCCCCH-------HHHHHH--hccCcE---EEEechhhhhhhcccCCC
Q 037469 277 NAEEIAQMGRRLGFNVVVAEANGNL-------SRFAET--VNYCDV---FLAVHGAAMTNMIFLPEN 331 (429)
Q Consensus 277 Ne~ev~~~l~~~Gf~V~v~e~~~~~-------~q~~~l--~~sadV---lVGvHGAGLTN~lFl~pg 331 (429)
+.+.|.+.++++||+|.+.. +.+. .++.+. ....|. ++.-||- .|.++...|
T Consensus 31 D~~~l~~~f~~lgF~V~~~~-dlt~~em~~~l~~~~~~~~~~~~d~~v~~~~sHG~--~~~l~~~D~ 94 (241)
T smart00115 31 DAENLTELFQSLGYEVHVKN-NLTAEEMLEELKEFAERPEHSDSDSFVCVLLSHGE--EGGIYGTDH 94 (241)
T ss_pred HHHHHHHHHHHCCCEEEEec-CCCHHHHHHHHHHHHhccccCCCCEEEEEEcCCCC--CCeEEEecC
Confidence 46778899999999998766 4442 333332 223444 3455773 477766555
No 123
>PRK12744 short chain dehydrogenase; Provisional
Probab=22.63 E-value=1.9e+02 Score=27.19 Aligned_cols=58 Identities=12% Similarity=0.128 Sum_probs=30.8
Q ss_pred eEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeCCC-CHHHHHHHh-------ccCcEEEEechhhh
Q 037469 263 RLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEANG-NLSRFAETV-------NYCDVFLAVHGAAM 322 (429)
Q Consensus 263 rlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~~~-~~~q~~~l~-------~sadVlVGvHGAGL 322 (429)
+++++.|+..|.-.+.+++.+.++..|.++..+..+. +.+++.+++ ...|++| |.||.
T Consensus 34 ~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li--~~ag~ 99 (257)
T PRK12744 34 KAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKAAFGRPDIAI--NTVGK 99 (257)
T ss_pred cEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHHhhCCCCEEE--ECCcc
Confidence 4556666554544555666666766665554444332 233333332 3467776 66663
No 124
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=22.57 E-value=2.9e+02 Score=28.46 Aligned_cols=57 Identities=28% Similarity=0.317 Sum_probs=36.7
Q ss_pred eEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeC---CCC---HHHHHHHh--ccCcEEEEech
Q 037469 263 RLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEA---NGN---LSRFAETV--NYCDVFLAVHG 319 (429)
Q Consensus 263 rlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~---~~~---~~q~~~l~--~sadVlVGvHG 319 (429)
|++++..++.++.--.+++.+.+++.|.++.+.+. +-+ +.+.+..+ +++|++||+=|
T Consensus 30 ~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGG 94 (377)
T cd08188 30 KVLLVSDPGVIKAGWVDRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAELYLENGCDVIIAVGG 94 (377)
T ss_pred eEEEEeCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 66667655444433467899999998988776542 223 33333333 37899999988
No 125
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=22.57 E-value=1.4e+02 Score=27.74 Aligned_cols=88 Identities=16% Similarity=0.238 Sum_probs=46.5
Q ss_pred EEEecCCC--ccccCHHHHHHHHHhcCCEEEEeeC-CCC-H-HHHHHHhccCcEEEEechhhhhhhcccCCCcEEEEEee
Q 037469 265 LIVSRKRT--RAFTNAEEIAQMGRRLGFNVVVAEA-NGN-L-SRFAETVNYCDVFLAVHGAAMTNMIFLPENAVFIQVVP 339 (429)
Q Consensus 265 liisR~~~--R~i~Ne~ev~~~l~~~Gf~V~v~e~-~~~-~-~q~~~l~~sadVlVGvHGAGLTN~lFl~pga~vIEi~P 339 (429)
.+++|.|. +-.-+..++++.|++.|.++.+.+- +.+ . .|...++ ++- .+-...+.|...-.-+||.|
T Consensus 35 ~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l---~i~-----~~~~~~~~~~~~F~~~eI~~ 106 (169)
T PF12689_consen 35 VVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLL---EID-----DADGDGVPLIEYFDYLEIYP 106 (169)
T ss_dssp -EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHT---T-C---------------CCECEEEESS
T ss_pred EEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhc---CCC-----ccccccccchhhcchhheec
Confidence 67788874 7777889999999999999988884 222 2 3444444 222 11234555556555689988
Q ss_pred CCCCccccCcchHhHHhhCCCeEEEE
Q 037469 340 FGGFAWLARTDYEEPAKAMKLRYLEY 365 (429)
Q Consensus 340 ~g~~~~~~~~~y~~~A~~~Gl~Y~~y 365 (429)
-. -..+|.++.+..|+.|-+-
T Consensus 107 gs-----K~~Hf~~i~~~tgI~y~eM 127 (169)
T PF12689_consen 107 GS-----KTTHFRRIHRKTGIPYEEM 127 (169)
T ss_dssp S------HHHHHHHHHHHH---GGGE
T ss_pred Cc-----hHHHHHHHHHhcCCChhHE
Confidence 54 3679999999999988543
No 126
>PRK07589 ornithine cyclodeaminase; Validated
Probab=22.52 E-value=1.5e+02 Score=30.59 Aligned_cols=65 Identities=11% Similarity=0.115 Sum_probs=43.3
Q ss_pred eEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeCCCCHHHHHHHhccCcEEEEechhhh----hhhcccCCCcEEEEE
Q 037469 263 RLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEANGNLSRFAETVNYCDVFLAVHGAAM----TNMIFLPENAVFIQV 337 (429)
Q Consensus 263 rlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~~~~~~q~~~l~~sadVlVGvHGAGL----TN~lFl~pga~vIEi 337 (429)
++.+.+|. ..+.+++.+.+++.|+++.+.+ +.++ .+..|||++..-.+.= -..=|++||+.|.=|
T Consensus 156 ~V~v~~r~----~~~a~~~~~~~~~~~~~v~~~~---~~~~---av~~ADIIvtaT~S~~~~Pvl~~~~lkpG~hV~aI 224 (346)
T PRK07589 156 EIRLYDID----PAATAKLARNLAGPGLRIVACR---SVAE---AVEGADIITTVTADKTNATILTDDMVEPGMHINAV 224 (346)
T ss_pred EEEEEeCC----HHHHHHHHHHHHhcCCcEEEeC---CHHH---HHhcCCEEEEecCCCCCCceecHHHcCCCcEEEec
Confidence 34455544 4455677777777788877654 4444 4568999999887532 234578999987655
No 127
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=22.41 E-value=2.6e+02 Score=27.73 Aligned_cols=87 Identities=20% Similarity=0.137 Sum_probs=50.4
Q ss_pred eEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeCCCCHHHHHHHhccCcEEEEechhhhhh-------hcccCCCcEEE
Q 037469 263 RLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEANGNLSRFAETVNYCDVFLAVHGAAMTN-------MIFLPENAVFI 335 (429)
Q Consensus 263 rlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~~~~~~q~~~l~~sadVlVGvHGAGLTN-------~lFl~pga~vI 335 (429)
++++++|...| .+++.+.+.+..-.+.+.. .++....++.+|++|..--+||.. .-+++++..|+
T Consensus 153 ~I~I~nR~~~k----a~~la~~l~~~~~~~~~~~----~~~~~~~~~~aDiVInaTp~Gm~~~~~~~~~~~~l~~~~~v~ 224 (284)
T PRK12549 153 RLTIFDVDPAR----AAALADELNARFPAARATA----GSDLAAALAAADGLVHATPTGMAKHPGLPLPAELLRPGLWVA 224 (284)
T ss_pred EEEEECCCHHH----HHHHHHHHHhhCCCeEEEe----ccchHhhhCCCCEEEECCcCCCCCCCCCCCCHHHcCCCcEEE
Confidence 57788776322 2344444433211122111 122233456899998876666532 23477888999
Q ss_pred EEeeCCCCccccCcchHhHHhhCCCeE
Q 037469 336 QVVPFGGFAWLARTDYEEPAKAMKLRY 362 (429)
Q Consensus 336 Ei~P~g~~~~~~~~~y~~~A~~~Gl~Y 362 (429)
+++-.- ..+.|-..|+..|.+.
T Consensus 225 DivY~P-----~~T~ll~~A~~~G~~~ 246 (284)
T PRK12549 225 DIVYFP-----LETELLRAARALGCRT 246 (284)
T ss_pred EeeeCC-----CCCHHHHHHHHCCCeE
Confidence 987432 2567888899988864
No 128
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=22.41 E-value=1.6e+02 Score=24.59 Aligned_cols=21 Identities=19% Similarity=0.099 Sum_probs=16.0
Q ss_pred HHHHHHHHhcCCEEEEeeCCC
Q 037469 279 EEIAQMGRRLGFNVVVAEANG 299 (429)
Q Consensus 279 ~ev~~~l~~~Gf~V~v~e~~~ 299 (429)
-+|++.|++.|.+|.+.+|..
T Consensus 20 ~~l~~~L~~~g~~V~~~DP~v 40 (106)
T PF03720_consen 20 LELIEELKERGAEVSVYDPYV 40 (106)
T ss_dssp HHHHHHHHHTT-EEEEE-TTS
T ss_pred HHHHHHHHHCCCEEEEECCcc
Confidence 468899999999999999943
No 129
>PRK06823 ornithine cyclodeaminase; Validated
Probab=22.40 E-value=1.6e+02 Score=29.82 Aligned_cols=65 Identities=18% Similarity=0.203 Sum_probs=42.4
Q ss_pred eEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeCCCCHHHHHHHhccCcEEEEechhhh--hhhcccCCCcEEEEE
Q 037469 263 RLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEANGNLSRFAETVNYCDVFLAVHGAAM--TNMIFLPENAVFIQV 337 (429)
Q Consensus 263 rlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~~~~~~q~~~l~~sadVlVGvHGAGL--TN~lFl~pga~vIEi 337 (429)
++.+.+|. ..+.+++.+.+++.|+++.+.+ +.+ ..+..|||++..-++.= -..=|++||+.|+=|
T Consensus 155 ~v~v~~r~----~~~a~~~~~~~~~~~~~v~~~~---~~~---~av~~ADIV~taT~s~~P~~~~~~l~~G~hi~~i 221 (315)
T PRK06823 155 QLWVWGRS----ETALEEYRQYAQALGFAVNTTL---DAA---EVAHAANLIVTTTPSREPLLQAEDIQPGTHITAV 221 (315)
T ss_pred EEEEECCC----HHHHHHHHHHHHhcCCcEEEEC---CHH---HHhcCCCEEEEecCCCCceeCHHHcCCCcEEEec
Confidence 45555655 3344566677777788887554 343 34579999999887652 122378999997655
No 130
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=22.38 E-value=1.5e+02 Score=30.39 Aligned_cols=41 Identities=5% Similarity=0.084 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCEEEEeeC---CCC---HHHHHHHhc-----cCcEEEEech
Q 037469 279 EEIAQMGRRLGFNVVVAEA---NGN---LSRFAETVN-----YCDVFLAVHG 319 (429)
Q Consensus 279 ~ev~~~l~~~Gf~V~v~e~---~~~---~~q~~~l~~-----sadVlVGvHG 319 (429)
+.+.+.|++.|.++.+.+. +-+ +++.++.++ .+|++||+=|
T Consensus 39 ~~v~~~L~~~g~~~~~f~~v~~nPt~~~v~~~~~~~~~~~~~~~D~IIaiGG 90 (347)
T cd08184 39 KDLISRLPVESEDMIIWVDATEEPKTDQIDALTAQVKSFDGKLPCAIVGIGG 90 (347)
T ss_pred hHHHHHHHhcCCcEEEEcCCCCCcCHHHHHHHHHHHHhhCCCCCCEEEEeCC
Confidence 7888999988887766532 323 455555554 6899999988
No 131
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=22.36 E-value=1.9e+02 Score=24.98 Aligned_cols=50 Identities=16% Similarity=0.263 Sum_probs=33.6
Q ss_pred cCHHHHHHHHHhcCCEEEEeeC---C-CCH-HHHHHHhccCcEEEEechhhhhhh
Q 037469 276 TNAEEIAQMGRRLGFNVVVAEA---N-GNL-SRFAETVNYCDVFLAVHGAAMTNM 325 (429)
Q Consensus 276 ~Ne~ev~~~l~~~Gf~V~v~e~---~-~~~-~q~~~l~~sadVlVGvHGAGLTN~ 325 (429)
.|..-+.+.+++.|+++....- + ..+ +.+.++.+.+|++|-.=|+|.+.-
T Consensus 18 ~~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliittGG~g~g~~ 72 (135)
T smart00852 18 SNGPALAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVITTGGTGPGPD 72 (135)
T ss_pred CcHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEcCCCCCCCC
Confidence 4566788899999998754322 2 123 344455567999999988886544
No 132
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=22.30 E-value=2.8e+02 Score=28.50 Aligned_cols=57 Identities=19% Similarity=0.313 Sum_probs=36.5
Q ss_pred eEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeC---CCC---HHHHHHHh--ccCcEEEEech
Q 037469 263 RLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEA---NGN---LSRFAETV--NYCDVFLAVHG 319 (429)
Q Consensus 263 rlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~---~~~---~~q~~~l~--~sadVlVGvHG 319 (429)
|+++|.-++.++.--.+++.+.|++.|.++.+.+. +-+ +++.+..+ ..+|++||+=|
T Consensus 25 r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG 89 (375)
T cd08194 25 RPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIALGG 89 (375)
T ss_pred eEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 56677655444321236789999999988876643 323 34443333 37899999988
No 133
>PRK13337 putative lipid kinase; Reviewed
Probab=22.08 E-value=4.9e+02 Score=25.80 Aligned_cols=77 Identities=18% Similarity=0.269 Sum_probs=46.8
Q ss_pred EEEecC-CCcc-ccCHHHHHHHHHhcCCEEEEeeC--CCCHHHHHHH--hccCcEEEEechhhhhhhcc---cCC-CcEE
Q 037469 265 LIVSRK-RTRA-FTNAEEIAQMGRRLGFNVVVAEA--NGNLSRFAET--VNYCDVFLAVHGAAMTNMIF---LPE-NAVF 334 (429)
Q Consensus 265 liisR~-~~R~-i~Ne~ev~~~l~~~Gf~V~v~e~--~~~~~q~~~l--~~sadVlVGvHGAGLTN~lF---l~p-ga~v 334 (429)
+|+... |+.+ -.+.+++.+.+++.|+++.+... ....+++++. -+..|++|.+=|=|-.|.+= +.. ....
T Consensus 6 ~I~Np~aG~~~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl~~vv~gl~~~~~~~~ 85 (304)
T PRK13337 6 IIYNPTSGRELFKKNLPDVLQKLEQAGYETSAHATTGPGDATLAAERAVERKFDLVIAAGGDGTLNEVVNGIAEKENRPK 85 (304)
T ss_pred EEECCcccchhHHHHHHHHHHHHHHcCCEEEEEEecCCCCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHhhCCCCCc
Confidence 445555 3322 23456888899999988655443 2345444432 24579999998888655432 322 2345
Q ss_pred EEEeeCC
Q 037469 335 IQVVPFG 341 (429)
Q Consensus 335 IEi~P~g 341 (429)
+=++|.|
T Consensus 86 lgiiP~G 92 (304)
T PRK13337 86 LGIIPVG 92 (304)
T ss_pred EEEECCc
Confidence 7789988
No 134
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=22.07 E-value=4.6e+02 Score=24.67 Aligned_cols=53 Identities=15% Similarity=0.111 Sum_probs=36.1
Q ss_pred cEEEEechhh---------hhhhcccCCCcEEEEEeeCCCCccccCcchHhHHhhCCCeEEEEEeec
Q 037469 312 DVFLAVHGAA---------MTNMIFLPENAVFIQVVPFGGFAWLARTDYEEPAKAMKLRYLEYKIKL 369 (429)
Q Consensus 312 dVlVGvHGAG---------LTN~lFl~pga~vIEi~P~g~~~~~~~~~y~~~A~~~Gl~Y~~y~i~~ 369 (429)
-|+..++|.+ .++.+|+.|++.+--+ | . .....+|..+....|+++..++.+.
T Consensus 75 pViA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~i---G-~-~~~~~~~~~ll~k~Gi~~~~~~~g~ 136 (214)
T cd07022 75 PIVAFVNGLAASAAYWIASAADRIVVTPTAGVGSI---G-V-VASHVDQSKALEKAGLKVTLIFAGA 136 (214)
T ss_pred CEEEEECCchhhHHHHHHhcCCEEEEcCCCeEEee---e-E-EEecCCHHHHHHhCCCeEEEEEcCC
Confidence 3666666632 3567788888776544 3 1 1134578899999999999888653
No 135
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=21.76 E-value=1.4e+02 Score=28.11 Aligned_cols=41 Identities=7% Similarity=0.096 Sum_probs=26.3
Q ss_pred CCCHHHHHHHhccCcEEEEechhhhhhhcccCCCcEEEEEeeC
Q 037469 298 NGNLSRFAETVNYCDVFLAVHGAAMTNMIFLPENAVFIQVVPF 340 (429)
Q Consensus 298 ~~~~~q~~~l~~sadVlVGvHGAGLTN~lFl~pga~vIEi~P~ 340 (429)
.+++.|++.++..||++||+-++. +|+--+= |+-+|-|+..
T Consensus 171 ~~~l~e~~ali~~a~~~I~~Dtg~-~HlA~a~-~~p~v~lfg~ 211 (247)
T PF01075_consen 171 KTSLRELAALISRADLVIGNDTGP-MHLAAAL-GTPTVALFGP 211 (247)
T ss_dssp TS-HHHHHHHHHTSSEEEEESSHH-HHHHHHT-T--EEEEESS
T ss_pred CCCHHHHHHHHhcCCEEEecCChH-HHHHHHH-hCCEEEEecC
Confidence 468999999999999999987654 3333221 3345556644
No 136
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=21.76 E-value=3e+02 Score=25.73 Aligned_cols=58 Identities=21% Similarity=0.190 Sum_probs=37.0
Q ss_pred CCCeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeCCCCHHHHHHHhccCcE-EEEe
Q 037469 260 KKPRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEANGNLSRFAETVNYCDV-FLAV 317 (429)
Q Consensus 260 ~~prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~~~~~~q~~~l~~sadV-lVGv 317 (429)
.++++++..=.+-..=+-..=+...++..||+|+.+..+.+.+++.+.+.+-+. +||+
T Consensus 81 ~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~~d~v~l 139 (201)
T cd02070 81 KKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHKPDILGL 139 (201)
T ss_pred CCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE
Confidence 467877766555444444444566778889999866667788877766554333 4443
No 137
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=21.54 E-value=1.7e+02 Score=26.81 Aligned_cols=39 Identities=10% Similarity=0.286 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCCEEEEeeCCCCHHHHHHHhccCcEEEEe
Q 037469 278 AEEIAQMGRRLGFNVVVAEANGNLSRFAETVNYCDVFLAV 317 (429)
Q Consensus 278 e~ev~~~l~~~Gf~V~v~e~~~~~~q~~~l~~sadVlVGv 317 (429)
..++.+.+++.||+|.++...+...+++.-. .-+.+|||
T Consensus 75 Ig~l~~lae~~g~~v~i~~Ggt~ar~~ik~~-~p~~iigV 113 (158)
T PF01976_consen 75 IGDLKKLAEKYGYKVYIATGGTLARKIIKEY-RPKAIIGV 113 (158)
T ss_pred hhHHHHHHHHcCCEEEEEcChHHHHHHHHHh-CCCEEEEE
Confidence 4789999999999998887433335555544 44666665
No 138
>PRK15456 universal stress protein UspG; Provisional
Probab=21.36 E-value=1.4e+02 Score=25.66 Aligned_cols=16 Identities=13% Similarity=0.264 Sum_probs=9.8
Q ss_pred cCcE-EEEechhhhhhh
Q 037469 310 YCDV-FLAVHGAAMTNM 325 (429)
Q Consensus 310 sadV-lVGvHGAGLTN~ 325 (429)
++|. ++|-||-|+..+
T Consensus 105 ~~DLIVmG~~g~~~~~~ 121 (142)
T PRK15456 105 GADVVVIGSRNPSISTH 121 (142)
T ss_pred CCCEEEEcCCCCCccce
Confidence 4554 567777766553
No 139
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=21.24 E-value=3e+02 Score=26.23 Aligned_cols=58 Identities=9% Similarity=0.130 Sum_probs=39.9
Q ss_pred CCCeEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeCCCCHHHHHHHhccCcE-EEEe
Q 037469 260 KKPRLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEANGNLSRFAETVNYCDV-FLAV 317 (429)
Q Consensus 260 ~~prlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~~~~~~q~~~l~~sadV-lVGv 317 (429)
.++++++-.=.+-..=+-..=+...++..||+|+.+..+.+.+++.+.+.+.+. +||+
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~~~~~V~l 145 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHKADIIGL 145 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE
Confidence 568887766555444444444566778889999987778888888877766554 4444
No 140
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=21.22 E-value=1.4e+02 Score=29.53 Aligned_cols=41 Identities=22% Similarity=0.273 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCEEEEeeCCCCHH---HHHHHhccCcEEEEech
Q 037469 279 EEIAQMGRRLGFNVVVAEANGNLS---RFAETVNYCDVFLAVHG 319 (429)
Q Consensus 279 ~ev~~~l~~~Gf~V~v~e~~~~~~---q~~~l~~sadVlVGvHG 319 (429)
.+.++.+|+.|.+++++-.+..++ ++++.+...|++||-|-
T Consensus 172 ~~~v~~lr~~~~D~II~l~H~G~~~d~~la~~~~giD~IiggH~ 215 (281)
T cd07409 172 QKEADKLKAQGVNKIIALSHSGYEVDKEIARKVPGVDVIVGGHS 215 (281)
T ss_pred HHHHHHHHhcCCCEEEEEeccCchhHHHHHHcCCCCcEEEeCCc
Confidence 345666777788888766544443 55666678999999883
No 141
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=21.03 E-value=5.7e+02 Score=27.96 Aligned_cols=93 Identities=17% Similarity=0.220 Sum_probs=62.9
Q ss_pred CCccccCHHHHHHHHHhcCCEEEEeeC---CCCH--HHH----------HHHhccCcEEEEechhhhhhhcccCCCcEEE
Q 037469 271 RTRAFTNAEEIAQMGRRLGFNVVVAEA---NGNL--SRF----------AETVNYCDVFLAVHGAAMTNMIFLPENAVFI 335 (429)
Q Consensus 271 ~~R~i~Ne~ev~~~l~~~Gf~V~v~e~---~~~~--~q~----------~~l~~sadVlVGvHGAGLTN~lFl~pga~vI 335 (429)
+.||+-=..+.++.|.+.||+|.+-+. ...+ ++- ..+. .|||++.+..-.....=+|++|.++|
T Consensus 12 ~E~RValtP~~v~~L~~~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~v~-~~diilkV~~P~~~e~~~l~~g~~li 90 (509)
T PRK09424 12 GETRVAATPKTVEQLLKLGFEVVVESGAGQLASFDDAAYREAGAEIVDGAAVW-QSDIILKVNAPSDDEIALLREGATLV 90 (509)
T ss_pred CCeEeccCHHHHHHHHHCCCEEEEeCCCCcCCCCCHHHHHHCCCEEecCcccc-cCCEEEEeCCCCHHHHHhcCCCCEEE
Confidence 456666667788888889999876433 1222 111 1345 68999999999888888999999998
Q ss_pred EEeeCCCCccccCcchHhHHhhCCCeEEEEEeec
Q 037469 336 QVVPFGGFAWLARTDYEEPAKAMKLRYLEYKIKL 369 (429)
Q Consensus 336 Ei~P~g~~~~~~~~~y~~~A~~~Gl~Y~~y~i~~ 369 (429)
=++-.. .....-+.....|+.-++|+.-+
T Consensus 91 ~~l~p~-----~~~~l~~~l~~~~it~ia~e~vp 119 (509)
T PRK09424 91 SFIWPA-----QNPELLEKLAARGVTVLAMDAVP 119 (509)
T ss_pred EEeCcc-----cCHHHHHHHHHcCCEEEEeeccc
Confidence 876332 13334444556788888887543
No 142
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=20.74 E-value=1.1e+02 Score=26.76 Aligned_cols=52 Identities=13% Similarity=0.201 Sum_probs=36.1
Q ss_pred ccccCHHHHHHHHHhcCCEEEEeeC--C-C-CH-HHHHHHhccCcEEEEechhhhhh
Q 037469 273 RAFTNAEEIAQMGRRLGFNVVVAEA--N-G-NL-SRFAETVNYCDVFLAVHGAAMTN 324 (429)
Q Consensus 273 R~i~Ne~ev~~~l~~~Gf~V~v~e~--~-~-~~-~q~~~l~~sadVlVGvHGAGLTN 324 (429)
+.=.|-.-+.+.|++.|+++..... + . .+ +.+...++++|++|-.=|.|.+.
T Consensus 14 ~~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~D~VittGG~g~~~ 70 (144)
T PF00994_consen 14 IRDSNGPFLAALLEELGIEVIRYGIVPDDPDAIKEALRRALDRADLVITTGGTGPGP 70 (144)
T ss_dssp SEBHHHHHHHHHHHHTTEEEEEEEEEESSHHHHHHHHHHHHHTTSEEEEESSSSSST
T ss_pred eEEhHHHHHHHHHHHcCCeeeEEEEECCCHHHHHHHHHhhhccCCEEEEcCCcCccc
Confidence 3345667788899999998874433 2 1 23 34455567889999999988665
No 143
>PRK13059 putative lipid kinase; Reviewed
Probab=20.64 E-value=5e+02 Score=25.67 Aligned_cols=65 Identities=15% Similarity=0.240 Sum_probs=41.5
Q ss_pred CHHHHHHHHHhcCCEEEEeeC--CCCHHHHHHH-hccCcEEEEechhhhhhhc---ccCCC-cEEEEEeeCC
Q 037469 277 NAEEIAQMGRRLGFNVVVAEA--NGNLSRFAET-VNYCDVFLAVHGAAMTNMI---FLPEN-AVFIQVVPFG 341 (429)
Q Consensus 277 Ne~ev~~~l~~~Gf~V~v~e~--~~~~~q~~~l-~~sadVlVGvHGAGLTN~l---Fl~pg-a~vIEi~P~g 341 (429)
..+++.+.+++.|+++.+.+. ....++..+. -..+|++|.+=|=|-.|.+ .+..+ .+-+=|+|.|
T Consensus 20 ~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGTv~evv~gl~~~~~~~~lgviP~G 91 (295)
T PRK13059 20 ELDKVIRIHQEKGYLVVPYRISLEYDLKNAFKDIDESYKYILIAGGDGTVDNVVNAMKKLNIDLPIGILPVG 91 (295)
T ss_pred HHHHHHHHHHHCCcEEEEEEccCcchHHHHHHHhhcCCCEEEEECCccHHHHHHHHHHhcCCCCcEEEECCC
Confidence 346788899999999776554 1223222222 2457999999999966644 13222 2457889988
No 144
>PRK08618 ornithine cyclodeaminase; Validated
Probab=20.53 E-value=2.1e+02 Score=28.83 Aligned_cols=64 Identities=20% Similarity=0.190 Sum_probs=41.1
Q ss_pred eEEEEecCCCccccCHHHHHHHHHhc-CCEEEEeeCCCCHHHHHHHhccCcEEEEechhhhhhh--cccCCCcEEEEE
Q 037469 263 RLLIVSRKRTRAFTNAEEIAQMGRRL-GFNVVVAEANGNLSRFAETVNYCDVFLAVHGAAMTNM--IFLPENAVFIQV 337 (429)
Q Consensus 263 rlliisR~~~R~i~Ne~ev~~~l~~~-Gf~V~v~e~~~~~~q~~~l~~sadVlVGvHGAGLTN~--lFl~pga~vIEi 337 (429)
++.+.+|... +-+++.+.+++. |.++...+ +.++ +++.+||+|..-+++ +-. -+++||+.|+=|
T Consensus 154 ~v~v~~r~~~----~a~~~~~~~~~~~~~~~~~~~---~~~~---~~~~aDiVi~aT~s~-~p~i~~~l~~G~hV~~i 220 (325)
T PRK08618 154 RVRVYSRTFE----KAYAFAQEIQSKFNTEIYVVN---SADE---AIEEADIIVTVTNAK-TPVFSEKLKKGVHINAV 220 (325)
T ss_pred EEEEECCCHH----HHHHHHHHHHHhcCCcEEEeC---CHHH---HHhcCCEEEEccCCC-CcchHHhcCCCcEEEec
Confidence 4667777643 335666666543 76665443 4444 346899999988877 222 478999998655
No 145
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=20.44 E-value=5.1e+02 Score=25.81 Aligned_cols=94 Identities=17% Similarity=0.164 Sum_probs=53.8
Q ss_pred CeEEEEecCCCccccCHHHHHHHHHhc-CCEEEEeeCCCCHHHHHHHhccCcEEEEechhhhhh---------hcccCCC
Q 037469 262 PRLLIVSRKRTRAFTNAEEIAQMGRRL-GFNVVVAEANGNLSRFAETVNYCDVFLAVHGAAMTN---------MIFLPEN 331 (429)
Q Consensus 262 prlliisR~~~R~i~Ne~ev~~~l~~~-Gf~V~v~e~~~~~~q~~~l~~sadVlVGvHGAGLTN---------~lFl~pg 331 (429)
-++++++|+.. ...+.+++.+.+.+. +..+.+.+.+ ..+.+...+.++|++|-..-.||.+ .-+++++
T Consensus 149 ~~i~i~nRt~~-~~~ka~~la~~~~~~~~~~~~~~~~~-~~~~l~~~~~~aDivINaTp~Gm~~~~~~~~~~~~~~l~~~ 226 (288)
T PRK12749 149 KEIKLFNRRDE-FFDKALAFAQRVNENTDCVVTVTDLA-DQQAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPG 226 (288)
T ss_pred CEEEEEeCCcc-HHHHHHHHHHHhhhccCceEEEechh-hhhhhhhhcccCCEEEECCCCCCCCCCCCCCCCcHHHCCCC
Confidence 46888888632 112224455544332 3333332321 1111223456789999877777743 1246788
Q ss_pred cEEEEEeeCCCCccccCcchHhHHhhCCCeE
Q 037469 332 AVFIQVVPFGGFAWLARTDYEEPAKAMKLRY 362 (429)
Q Consensus 332 a~vIEi~P~g~~~~~~~~~y~~~A~~~Gl~Y 362 (429)
..|++++-.- ..+.|-..|+..|.+.
T Consensus 227 ~~v~D~vY~P-----~~T~ll~~A~~~G~~~ 252 (288)
T PRK12749 227 LLVTECVYNP-----HMTKLLQQAQQAGCKT 252 (288)
T ss_pred CEEEEecCCC-----ccCHHHHHHHHCCCeE
Confidence 9999997321 2567888899988764
No 146
>PRK05568 flavodoxin; Provisional
Probab=20.37 E-value=2.1e+02 Score=24.56 Aligned_cols=49 Identities=22% Similarity=0.239 Sum_probs=32.8
Q ss_pred CCeEEEEecCC-CccccCHHHHHHHHHhcCCEEEEeeC-CCCHHHHHHHhccCcEEE
Q 037469 261 KPRLLIVSRKR-TRAFTNAEEIAQMGRRLGFNVVVAEA-NGNLSRFAETVNYCDVFL 315 (429)
Q Consensus 261 ~prlliisR~~-~R~i~Ne~ev~~~l~~~Gf~V~v~e~-~~~~~q~~~l~~sadVlV 315 (429)
+.-++|.|..| ++++. +.+.+.+++.|.++.+.+. +.+..+ +..+|.+|
T Consensus 3 ~~~IvY~S~~GnT~~~a--~~i~~~~~~~g~~v~~~~~~~~~~~~----~~~~d~ii 53 (142)
T PRK05568 3 KINIIYWSGTGNTEAMA--NLIAEGAKENGAEVKLLNVSEASVDD----VKGADVVA 53 (142)
T ss_pred eEEEEEECCCchHHHHH--HHHHHHHHHCCCeEEEEECCCCCHHH----HHhCCEEE
Confidence 34678888886 46666 5577777788999888776 444443 33567654
No 147
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=20.31 E-value=2.7e+02 Score=28.90 Aligned_cols=57 Identities=18% Similarity=0.232 Sum_probs=36.9
Q ss_pred eEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeC---CCC---HHHHHHHh--ccCcEEEEech
Q 037469 263 RLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEA---NGN---LSRFAETV--NYCDVFLAVHG 319 (429)
Q Consensus 263 rlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~---~~~---~~q~~~l~--~sadVlVGvHG 319 (429)
|+++|.-++-+..-=.+++.+.|++.|+++.+++. +-+ +++.+..+ +.+|++||+=|
T Consensus 23 k~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG 87 (398)
T cd08178 23 RAFIVTDRFMVKLGYVDKVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMNSFKPDTIIALGG 87 (398)
T ss_pred eEEEEcChhHHhCccHHHHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 56677644333333457789999999998876542 323 34444443 36899999988
No 148
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=20.30 E-value=3.7e+02 Score=24.99 Aligned_cols=50 Identities=20% Similarity=0.226 Sum_probs=37.4
Q ss_pred eEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeCCCCHHHHHHHhccCcEEEEech
Q 037469 263 RLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEANGNLSRFAETVNYCDVFLAVHG 319 (429)
Q Consensus 263 rlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~~~~~~q~~~l~~sadVlVGvHG 319 (429)
++..+.|+. -.+..+.+++.|.+++..+. .+.+.+.+.+..+|+++.+-|
T Consensus 24 ~V~~l~R~~------~~~~~~~l~~~g~~vv~~d~-~~~~~l~~al~g~d~v~~~~~ 73 (233)
T PF05368_consen 24 SVRALVRDP------SSDRAQQLQALGAEVVEADY-DDPESLVAALKGVDAVFSVTP 73 (233)
T ss_dssp CEEEEESSS------HHHHHHHHHHTTTEEEES-T-T-HHHHHHHHTTCSEEEEESS
T ss_pred CcEEEEecc------chhhhhhhhcccceEeeccc-CCHHHHHHHHcCCceEEeecC
Confidence 456667765 45677888889999886554 477888899999999998877
No 149
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=20.28 E-value=1.2e+02 Score=30.07 Aligned_cols=67 Identities=9% Similarity=0.116 Sum_probs=41.3
Q ss_pred Ccccc--CHHHHHHHHHhcCCEEEEe-e-------------------C--CCCHHHHHHHhccCcEEEEechhhhhhhcc
Q 037469 272 TRAFT--NAEEIAQMGRRLGFNVVVA-E-------------------A--NGNLSRFAETVNYCDVFLAVHGAAMTNMIF 327 (429)
Q Consensus 272 ~R~i~--Ne~ev~~~l~~~Gf~V~v~-e-------------------~--~~~~~q~~~l~~sadVlVGvHGAGLTN~lF 327 (429)
.|++- +-.|+++.+.+.|+++++. . . .+++.|.+.+++.||++||.=. |..|+--
T Consensus 191 ~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~e~~~~~~i~~~~~~~~l~g~~sL~elaali~~a~l~I~nDS-Gp~HlA~ 269 (322)
T PRK10964 191 DKHWPEAHWRELIGLLAPSGLRIKLPWGAEHEEQRAKRLAEGFPYVEVLPKLSLEQVARVLAGAKAVVSVDT-GLSHLTA 269 (322)
T ss_pred cccCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHccCCcceecCCCCHHHHHHHHHhCCEEEecCC-cHHHHHH
Confidence 45554 3467777776667776553 1 1 3678999999999999999743 3333321
Q ss_pred cCCCcEEEEEeeC
Q 037469 328 LPENAVFIQVVPF 340 (429)
Q Consensus 328 l~pga~vIEi~P~ 340 (429)
. =|+-+|-|+..
T Consensus 270 A-~g~p~valfGp 281 (322)
T PRK10964 270 A-LDRPNITLYGP 281 (322)
T ss_pred H-hCCCEEEEECC
Confidence 1 13455666644
No 150
>cd02410 archeal_CPSF_KH The archaeal cleavage and polyadenylation specificity factor (CPSF) contains an N-terminal K homology RNA-binding domain (KH). The archeal CPSFs are predicted to be metal-dependent RNases belonging to the beta-CASP family, a subgroup enzymes within the metallo-beta-lactamase fold. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH domains are known to bind single-stranded RNA or DNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=20.23 E-value=2e+02 Score=26.20 Aligned_cols=77 Identities=14% Similarity=0.271 Sum_probs=50.7
Q ss_pred CCCeEEEEecCCCccccCHHHHHHHH-HhcCCEEEE-eeCC--CCHHHHHHHhccCcEEEEechhhhhhhcccCC-CcEE
Q 037469 260 KKPRLLIVSRKRTRAFTNAEEIAQMG-RRLGFNVVV-AEAN--GNLSRFAETVNYCDVFLAVHGAAMTNMIFLPE-NAVF 334 (429)
Q Consensus 260 ~~prlliisR~~~R~i~Ne~ev~~~l-~~~Gf~V~v-~e~~--~~~~q~~~l~~sadVlVGvHGAGLTN~lFl~p-ga~v 334 (429)
..|.+++..++. +.+.+.+++++.| +++--.+++ .++. ++-++-...+.+ +-+-+||++|+.|=+. |-++
T Consensus 7 EGPelviYtk~P-~~~~~~~dli~~lAk~lrKRIvvR~dps~l~~~e~A~~~I~~----ivP~ea~i~di~Fd~~tGEV~ 81 (145)
T cd02410 7 EGPELVVYTKNP-ELFAEDGDLVKDLAKDLRKRIVIRPDPSVLKPPEEAIKIILE----IVPEEAGITDIYFDDDTGEVI 81 (145)
T ss_pred eCCeEEEEECCH-HHHhcccHHHHHHHHHHhceEEEcCChhhcCCHHHHHHHHHH----hCCCccCceeeEecCCCcEEE
Confidence 458888888763 6666666777655 445555543 3432 344555555544 4466899999999997 9999
Q ss_pred EEEeeCC
Q 037469 335 IQVVPFG 341 (429)
Q Consensus 335 IEi~P~g 341 (429)
||.--.|
T Consensus 82 IeaeKPG 88 (145)
T cd02410 82 IEAEKPG 88 (145)
T ss_pred EEEcCCe
Confidence 9987443
No 151
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=20.17 E-value=3.4e+02 Score=28.07 Aligned_cols=57 Identities=26% Similarity=0.256 Sum_probs=35.8
Q ss_pred eEEEEecCCCccccCHHHHHHHHHhcCCEEEEeeC---CCC---HHHHHHHh--ccCcEEEEech
Q 037469 263 RLLIVSRKRTRAFTNAEEIAQMGRRLGFNVVVAEA---NGN---LSRFAETV--NYCDVFLAVHG 319 (429)
Q Consensus 263 rlliisR~~~R~i~Ne~ev~~~l~~~Gf~V~v~e~---~~~---~~q~~~l~--~sadVlVGvHG 319 (429)
|++++..++..+---.+++.+.|++.|.++.+.+. +-+ +.+.++.. +++|++||+=|
T Consensus 24 ~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~~~~~~v~~~~~~~~~~~~D~IIaiGG 88 (386)
T cd08191 24 RALIVTDERMAGTPVFAELVQALAAAGVEVEVFDGVLPDLPRSELCDAASAAARAGPDVIIGLGG 88 (386)
T ss_pred eEEEEECcchhhcchHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 56667755444423357788999999998876653 112 22222222 47899999988
Done!