Query 037470
Match_columns 445
No_of_seqs 234 out of 1476
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 12:37:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037470.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037470hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0679 Actin-related protein 100.0 2.4E-93 5.1E-98 660.8 28.6 413 1-445 5-426 (426)
2 PTZ00452 actin; Provisional 100.0 2.4E-85 5.1E-90 648.3 32.1 364 7-445 5-375 (375)
3 KOG0676 Actin and related prot 100.0 1.1E-85 2.3E-90 628.9 25.5 365 1-445 1-372 (372)
4 PTZ00281 actin; Provisional 100.0 5.4E-84 1.2E-88 640.4 33.5 368 3-445 2-376 (376)
5 PTZ00466 actin-like protein; P 100.0 7E-84 1.5E-88 638.2 33.4 362 7-444 12-379 (380)
6 PTZ00004 actin-2; Provisional 100.0 3.6E-81 7.8E-86 621.1 32.7 368 4-445 3-378 (378)
7 PTZ00280 Actin-related protein 100.0 2.2E-77 4.8E-82 601.4 31.8 366 7-443 4-408 (414)
8 PF00022 Actin: Actin; InterP 100.0 2.3E-78 4.9E-83 607.7 24.0 387 4-445 1-393 (393)
9 KOG0677 Actin-related protein 100.0 7E-77 1.5E-81 523.8 17.7 367 5-444 2-387 (389)
10 smart00268 ACTIN Actin. ACTIN 100.0 1.8E-73 3.9E-78 567.8 32.7 361 8-444 2-372 (373)
11 cd00012 ACTIN Actin; An ubiqui 100.0 1.3E-71 2.8E-76 553.9 32.1 361 9-443 1-371 (371)
12 COG5277 Actin and related prot 100.0 2.8E-69 6.2E-74 535.1 26.9 389 3-445 2-444 (444)
13 KOG0680 Actin-related protein 100.0 7.9E-66 1.7E-70 466.4 23.0 355 6-444 2-398 (400)
14 KOG0678 Actin-related protein 100.0 9E-57 2E-61 408.0 15.7 368 8-442 5-407 (415)
15 KOG0681 Actin-related protein 100.0 1.2E-54 2.6E-59 417.4 17.6 388 7-444 23-639 (645)
16 KOG0797 Actin-related protein 100.0 1E-40 2.3E-45 319.1 19.5 321 88-445 177-615 (618)
17 PRK13930 rod shape-determining 100.0 2.3E-38 4.9E-43 311.0 15.3 304 10-418 11-327 (335)
18 PRK13927 rod shape-determining 100.0 2.6E-37 5.7E-42 303.2 15.0 303 9-418 7-323 (334)
19 TIGR00904 mreB cell shape dete 100.0 2.8E-35 6.1E-40 288.3 15.9 307 10-418 5-326 (333)
20 PRK13929 rod-share determining 100.0 9.7E-34 2.1E-38 276.9 20.1 300 9-416 6-323 (335)
21 PRK13928 rod shape-determining 100.0 1.5E-31 3.2E-36 262.3 15.5 303 10-418 6-322 (336)
22 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 2.5E-31 5.3E-36 254.5 8.3 301 9-417 3-319 (326)
23 COG1077 MreB Actin-like ATPase 99.9 1.7E-24 3.7E-29 199.7 14.9 308 8-418 7-330 (342)
24 TIGR02529 EutJ ethanolamine ut 99.8 4.1E-18 9E-23 158.3 12.1 205 93-415 28-238 (239)
25 PRK15080 ethanolamine utilizat 99.7 5.8E-16 1.2E-20 146.5 15.1 207 92-416 54-266 (267)
26 CHL00094 dnaK heat shock prote 99.6 2.9E-14 6.3E-19 150.6 14.7 246 98-419 107-376 (621)
27 PTZ00400 DnaK-type molecular c 99.5 1.8E-13 3.9E-18 145.1 15.9 225 126-419 175-415 (663)
28 TIGR01991 HscA Fe-S protein as 99.5 1.6E-13 3.4E-18 144.2 13.6 242 99-419 102-360 (599)
29 PLN03184 chloroplast Hsp70; Pr 99.5 3.1E-13 6.8E-18 143.4 15.7 249 98-418 144-412 (673)
30 PRK00290 dnaK molecular chaper 99.5 2.4E-13 5.1E-18 144.1 13.3 225 126-419 134-374 (627)
31 TIGR02350 prok_dnaK chaperone 99.5 2.7E-13 5.8E-18 143.1 13.1 225 126-419 131-372 (595)
32 PRK13411 molecular chaperone D 99.5 2.8E-13 6.1E-18 143.5 12.7 225 126-418 134-375 (653)
33 PRK01433 hscA chaperone protei 99.5 1E-12 2.2E-17 137.4 15.5 203 126-419 142-356 (595)
34 PRK13410 molecular chaperone D 99.4 9.2E-13 2E-17 139.4 14.7 224 126-419 136-376 (668)
35 PRK05183 hscA chaperone protei 99.4 1E-12 2.2E-17 138.5 14.2 234 105-419 128-376 (616)
36 PTZ00186 heat shock 70 kDa pre 99.4 7E-13 1.5E-17 139.8 12.9 223 126-418 161-400 (657)
37 PTZ00009 heat shock 70 kDa pro 99.4 1.8E-12 4E-17 137.5 14.3 222 126-419 141-381 (653)
38 PRK11678 putative chaperone; P 99.2 2.4E-10 5.1E-15 115.6 15.6 84 126-219 150-260 (450)
39 TIGR01174 ftsA cell division p 99.2 5.6E-11 1.2E-15 118.4 8.0 171 137-385 156-339 (371)
40 PRK09472 ftsA cell division pr 99.1 6E-11 1.3E-15 119.7 7.0 191 147-418 176-387 (420)
41 COG0443 DnaK Molecular chapero 99.0 2.1E-08 4.5E-13 104.6 17.9 93 125-225 120-223 (579)
42 COG0849 ftsA Cell division ATP 98.9 3.3E-09 7.2E-14 104.9 7.1 186 159-419 179-380 (418)
43 PF00012 HSP70: Hsp70 protein; 98.9 1.5E-09 3.2E-14 115.3 4.9 225 126-418 136-375 (602)
44 PRK13917 plasmid segregation p 98.8 3.4E-07 7.3E-12 89.9 17.1 67 159-225 153-233 (344)
45 PF11104 PilM_2: Type IV pilus 98.7 3.4E-08 7.4E-13 97.2 9.1 192 103-398 86-306 (340)
46 TIGR03739 PRTRC_D PRTRC system 98.6 3E-07 6.4E-12 89.7 12.2 197 12-225 2-215 (320)
47 TIGR01175 pilM type IV pilus a 98.5 1.5E-06 3.2E-11 86.0 12.5 119 178-385 189-307 (348)
48 COG4820 EutJ Ethanolamine util 98.4 5.7E-08 1.2E-12 84.3 0.9 113 94-218 61-179 (277)
49 COG4972 PilM Tfp pilus assembl 98.4 6.4E-06 1.4E-10 77.4 12.6 42 179-222 195-236 (354)
50 PRK10719 eutA reactivating fac 97.9 3.7E-05 8.1E-10 76.5 9.1 121 92-217 53-184 (475)
51 KOG0103 Molecular chaperones H 97.8 0.0008 1.7E-08 69.2 15.8 93 125-225 137-247 (727)
52 KOG0104 Molecular chaperones G 97.7 0.00034 7.4E-09 72.3 11.8 92 126-225 159-276 (902)
53 PF06406 StbA: StbA protein; 97.7 0.00011 2.4E-09 71.6 7.7 107 110-225 81-213 (318)
54 KOG0100 Molecular chaperones G 97.6 9.8E-05 2.1E-09 71.0 6.4 90 126-223 173-274 (663)
55 KOG0101 Molecular chaperones H 97.6 0.00061 1.3E-08 70.3 12.1 91 126-224 144-247 (620)
56 PF06277 EutA: Ethanolamine ut 97.0 0.0024 5.3E-08 63.8 8.3 128 92-228 50-203 (473)
57 TIGR03286 methan_mark_15 putat 96.5 0.0034 7.5E-08 61.8 4.7 67 340-418 336-402 (404)
58 KOG0102 Molecular chaperones m 96.1 0.03 6.6E-07 56.4 8.8 90 127-224 162-262 (640)
59 TIGR00241 CoA_E_activ CoA-subs 95.9 0.024 5.1E-07 53.2 7.0 44 179-222 93-137 (248)
60 COG4819 EutA Ethanolamine util 94.7 0.13 2.9E-06 48.8 7.8 112 92-214 52-180 (473)
61 COG1924 Activator of 2-hydroxy 94.3 0.4 8.6E-06 46.7 10.1 44 364-418 346-389 (396)
62 PRK11031 guanosine pentaphosph 93.9 0.11 2.4E-06 53.8 6.1 39 177-217 132-170 (496)
63 TIGR03706 exo_poly_only exopol 93.2 0.29 6.4E-06 47.2 7.3 40 177-218 125-164 (300)
64 COG0248 GppA Exopolyphosphatas 92.6 0.094 2E-06 53.8 3.1 41 176-218 128-168 (492)
65 PRK10854 exopolyphosphatase; P 91.2 0.41 8.8E-06 49.9 6.1 38 177-216 137-174 (513)
66 PF14450 FtsA: Cell division p 88.8 1.6 3.5E-05 35.7 6.6 42 180-223 2-53 (120)
67 PF02541 Ppx-GppA: Ppx/GppA ph 88.2 0.93 2E-05 43.3 5.5 42 175-218 110-151 (285)
68 PF01968 Hydantoinase_A: Hydan 88.0 0.54 1.2E-05 45.1 3.8 33 170-202 69-102 (290)
69 TIGR02261 benz_CoA_red_D benzo 83.4 0.37 8E-06 45.2 0.1 50 362-417 213-262 (262)
70 PF08841 DDR: Diol dehydratase 82.3 3.5 7.7E-05 38.7 6.0 65 147-222 106-177 (332)
71 TIGR03192 benz_CoA_bzdQ benzoy 79.9 0.31 6.6E-06 46.4 -1.8 67 340-418 221-287 (293)
72 TIGR03123 one_C_unchar_1 proba 79.1 2 4.2E-05 41.6 3.4 29 174-202 125-153 (318)
73 TIGR02259 benz_CoA_red_A benzo 78.8 0.73 1.6E-05 45.5 0.4 52 360-417 381-432 (432)
74 COG1548 Predicted transcriptio 75.2 2 4.4E-05 39.6 2.2 24 176-199 129-152 (330)
75 PRK13317 pantothenate kinase; 73.7 1.3 2.9E-05 42.1 0.6 72 339-418 200-273 (277)
76 PF01869 BcrAD_BadFG: BadF/Bad 59.7 0.52 1.1E-05 44.7 -5.2 67 340-417 205-271 (271)
77 PRK13318 pantothenate kinase; 58.2 78 0.0017 29.6 9.3 120 10-201 3-153 (258)
78 PRK13321 pantothenate kinase; 55.4 64 0.0014 30.2 8.2 108 10-189 3-136 (256)
79 COG2441 Predicted butyrate kin 54.3 6.4 0.00014 36.9 1.2 46 178-223 164-213 (374)
80 PF03702 UPF0075: Uncharacteri 48.9 10 0.00022 37.6 1.7 25 362-386 286-310 (364)
81 KOG2708 Predicted metalloprote 47.9 65 0.0014 29.5 6.4 51 174-226 121-172 (336)
82 COG0145 HyuA N-methylhydantoin 45.7 18 0.00039 38.9 3.1 33 170-202 269-303 (674)
83 PRK13324 pantothenate kinase; 43.8 2.5E+02 0.0055 26.3 10.2 18 9-26 2-19 (258)
84 PRK05082 N-acetylmannosamine k 41.7 19 0.00041 34.3 2.4 67 340-417 220-286 (291)
85 smart00842 FtsA Cell division 40.8 81 0.0017 27.8 6.1 21 95-115 36-56 (187)
86 PRK09557 fructokinase; Reviewe 39.2 28 0.00061 33.3 3.2 49 145-202 92-147 (301)
87 COG4012 Uncharacterized protei 39.0 87 0.0019 29.4 5.9 58 163-222 209-273 (342)
88 PRK13310 N-acetyl-D-glucosamin 35.4 23 0.00049 34.0 1.8 49 145-202 92-147 (303)
89 cd08627 PI-PLCc_gamma1 Catalyt 34.5 53 0.0012 30.1 3.9 40 105-150 74-116 (229)
90 cd08626 PI-PLCc_beta4 Catalyti 33.9 53 0.0011 30.8 3.8 40 105-150 76-118 (257)
91 cd08630 PI-PLCc_delta3 Catalyt 33.4 55 0.0012 30.7 3.9 40 105-150 74-116 (258)
92 cd08632 PI-PLCc_eta1 Catalytic 33.1 57 0.0012 30.4 3.9 40 105-150 74-116 (253)
93 cd08629 PI-PLCc_delta1 Catalyt 33.0 55 0.0012 30.6 3.8 40 105-150 74-116 (258)
94 PRK09585 anmK anhydro-N-acetyl 32.9 34 0.00073 33.9 2.6 24 362-385 288-311 (365)
95 cd08594 PI-PLCc_eta Catalytic 32.9 57 0.0012 29.9 3.8 40 105-150 74-116 (227)
96 cd08631 PI-PLCc_delta4 Catalyt 32.7 55 0.0012 30.6 3.8 40 105-150 74-116 (258)
97 cd08593 PI-PLCc_delta Catalyti 32.6 55 0.0012 30.7 3.8 40 105-150 74-116 (257)
98 cd08595 PI-PLCc_zeta Catalytic 32.2 58 0.0013 30.5 3.8 40 105-150 74-116 (257)
99 PF08735 DUF1786: Putative pyr 31.9 74 0.0016 29.7 4.4 60 161-222 144-213 (254)
100 cd08596 PI-PLCc_epsilon Cataly 31.5 61 0.0013 30.3 3.8 40 105-150 74-116 (254)
101 cd08633 PI-PLCc_eta2 Catalytic 31.3 63 0.0014 30.2 3.9 40 105-150 74-116 (254)
102 cd08591 PI-PLCc_beta Catalytic 29.4 69 0.0015 30.0 3.8 40 105-150 76-118 (257)
103 TIGR01174 ftsA cell division p 29.2 1.2E+02 0.0026 30.0 5.9 37 95-133 37-76 (371)
104 cd08592 PI-PLCc_gamma Catalyti 28.8 72 0.0016 29.3 3.8 40 105-150 74-116 (229)
105 cd08598 PI-PLC1c_yeast Catalyt 28.3 73 0.0016 29.3 3.7 40 105-150 74-116 (231)
106 PF03612 EIIBC-GUT_N: Sorbitol 28.3 33 0.00071 30.1 1.4 27 5-36 61-87 (183)
107 PF07318 DUF1464: Protein of u 27.3 84 0.0018 30.8 4.1 51 364-418 264-314 (343)
108 smart00732 YqgFc Likely ribonu 26.8 1.5E+02 0.0031 22.6 4.9 47 179-225 3-50 (99)
109 cd08597 PI-PLCc_PRIP_metazoa C 26.4 80 0.0017 29.7 3.7 40 105-150 74-116 (260)
110 PRK09698 D-allose kinase; Prov 25.7 44 0.00095 32.0 2.0 68 340-417 223-294 (302)
111 cd08558 PI-PLCc_eukaryota Cata 24.9 93 0.002 28.6 3.8 40 105-150 74-116 (226)
112 PF14824 Sirohm_synth_M: Siroh 24.5 62 0.0013 19.4 1.6 21 365-387 9-29 (30)
113 cd08628 PI-PLCc_gamma2 Catalyt 23.4 1E+02 0.0022 28.8 3.8 40 105-150 74-116 (254)
114 TIGR03192 benz_CoA_bzdQ benzoy 23.2 1.2E+02 0.0027 29.0 4.4 47 179-227 34-83 (293)
115 PF09693 Phage_XkdX: Phage unc 22.9 45 0.00097 21.4 1.0 17 419-435 18-35 (40)
116 cd08623 PI-PLCc_beta1 Catalyti 22.2 1.1E+02 0.0024 28.6 3.8 40 105-150 76-119 (258)
117 cd08624 PI-PLCc_beta2 Catalyti 21.8 1.1E+02 0.0024 28.7 3.7 40 105-150 76-119 (261)
118 PRK13333 pantothenate kinase; 21.2 1.1E+02 0.0025 27.6 3.5 30 165-197 74-103 (206)
119 TIGR01319 glmL_fam conserved h 21.2 54 0.0012 33.4 1.6 24 177-200 249-272 (463)
120 TIGR03286 methan_mark_15 putat 21.1 1.4E+02 0.003 30.1 4.4 50 178-227 145-194 (404)
121 TIGR01669 phage_XkdX phage unc 20.8 53 0.0011 21.7 1.0 17 419-435 23-40 (45)
122 COG0813 DeoD Purine-nucleoside 20.3 5.3E+02 0.011 23.6 7.4 85 97-201 125-210 (236)
No 1
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=100.00 E-value=2.4e-93 Score=660.83 Aligned_cols=413 Identities=46% Similarity=0.823 Sum_probs=377.3
Q ss_pred CCCCCCCCcEEEeCCCceeEeeecCCCCCCcccCcceeeecCCCcccccccccCCCccccCCCccCCcCCCCCcceEecc
Q 037470 1 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDDSANAERNSGSAIDSKNNVDSNKGKGKRKLYVGT 80 (445)
Q Consensus 1 ~y~~~~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 80 (445)
|||+|+.++||||+||+++||||||+|.|++++||++|...+.. +. ....+.++++.
T Consensus 5 ~yggdEv~alViDpGS~~traGyaged~Pk~ilPS~~G~~tk~~-----~d------------------~~~~~~~y~~~ 61 (426)
T KOG0679|consen 5 VYGGDEVSALVIDPGSHTTRAGYAGEDSPKAILPSVYGKVTKTD-----GD------------------AEDKKGYYVDE 61 (426)
T ss_pred cccccccceEEEeCCCceEeccccCCCCccccccceeeeeeccc-----Cc------------------cccccceEeec
Confidence 79999999999999999999999999999999999999753221 00 01234589999
Q ss_pred ccccCcCCCeEEeccCCCCeecCHHHHHHHHHHHhccccCCCCCCCcEEEecCCCCCHHHHHHHhc---cccCccCCeee
Q 037470 81 QSLGFRRDHMEVLSPLKDGVVVDWDIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNTQQQRESSAF---SFWVCVCGILV 157 (445)
Q Consensus 81 ~~~~~~~~~~~~~~P~~~g~i~d~d~~e~i~~~~~~~~L~~~~~~~~vll~ep~~~~~~~r~~~~e---E~~~~~~~~~~ 157 (445)
+++..++.++++..|+++|.|.|||.++.+|+|+|.++|.++|.+||+||+||+++++..|++++| |.++
T Consensus 62 ~ai~~pr~gmEv~~~i~nGlv~dWD~~~~~w~~~~~~~Lk~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~n------- 134 (426)
T KOG0679|consen 62 NAIHVPRPGMEVKTPIKNGLVEDWDLFEMQWRYAYKNQLKVNPEEHPVLITEPPWNTRANREKLTELMFEKLN------- 134 (426)
T ss_pred hhccCCCCCCeeccchhcCCcccHHHHHHHHHHHHhhhhhcCccccceeeecCCCCcHHHHHHHHHHHHhhcC-------
Confidence 999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred ccceE-EechhhhhhhccCCceEEEEEcCCCceEEEEeecceecCccceEecccHHHHHHHHHHHHHhcCCcccCccccc
Q 037470 158 FCPVI-EFDALVLTSFALGRATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRYSFK 236 (445)
Q Consensus 158 ~~p~v-~~~~~~la~~~~g~~tglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~p~~~~~ 236 (445)
+|++ ++++++|++||.|+.||||||||++.|+|+||+||+++.+++.+.++||++|+..++++|+.+++.+.|.|.++
T Consensus 135 -vPAf~L~k~~v~~AFA~GrstalVvDiGa~~~svsPV~DG~Vlqk~vvks~laGdFl~~~~~q~l~~~~iei~P~y~ia 213 (426)
T KOG0679|consen 135 -VPAFYLAKTAVCTAFANGRSTALVVDIGATHTSVSPVHDGYVLQKGVVKSPLAGDFLNDQCRQLLEPKNIEIIPMYNIA 213 (426)
T ss_pred -CceEEEechHHHHHHhcCCCceEEEEecCCCceeeeeecceEeeeeeEecccchHHHHHHHHHHHhhcCcccCcHHHhh
Confidence 9999 99999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccC-CCCCcc--eeccCCCCCchhHHhHhHHHHHHHHhhcceecCCCcCCccccCCCCCceeECCCCceEeeCcccccc
Q 037470 237 RKEN-RPGEFQ--IVDLDFPNTTESYKLYCQRVIASDIKECVCRAPDTPYDESAYSNIPMTPYELPDGQVIEIGADRFKT 313 (445)
Q Consensus 237 ~~~~-~~~~~~--~~~~~~~~~~~s~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~lpdg~~i~l~~er~~~ 313 (445)
.++. +.+... ......+++++||+.+....+++++|+.++.+++.++++....+.+++.|++|||.+..++.|||++
T Consensus 214 ~k~~v~~g~~an~~~~~~~~d~tes~~~y~~~~v~~e~ke~v~qv~dtp~de~~~~~i~~~~~efP~g~~~~~G~er~ri 293 (426)
T KOG0679|consen 214 SKEPVREGYPANAVLRVSIPDLTESYHNYMEQRVYQEFKESVLQVSDTPFDEEVAAQIPTKHFEFPDGYTLDFGAERFRI 293 (426)
T ss_pred hcccccccCcchhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccccCCCccccCCCCcccccCcceeec
Confidence 8863 333322 2445567889999999999999999999999999999998888899999999999999999999999
Q ss_pred cccccCCCCCCCCCCCCCccCC-CCCCCHHHHHHHHHHhCCHHhHHHHhcCccccCCCCchhhHHHHHHHHHhhhCCCCc
Q 037470 314 PDVLFNPSLVQTIPGMENFAEN-IPFRGLPQMVIDSINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAA 392 (445)
Q Consensus 314 ~E~lF~p~~~~~~~~~~~~~~~-~~~~~L~~~I~~~i~~~~~d~r~~L~~nIvLtGG~s~i~Gl~~RL~~eL~~~~p~~~ 392 (445)
||.||+|+......+...++.. ....|+++++..||..||+|+|..|++|||+|||+|+|+||.+||++||..++|+.
T Consensus 294 pe~lF~Ps~v~~~s~~~~~~~~~n~~lG~~~lv~sSi~~cDvdiR~~L~~nVivtGGtSliqG~s~RL~~ELs~~~P~s- 372 (426)
T KOG0679|consen 294 PEYLFKPSLVKSSSKEAGATSHINTMLGLPHLVYSSINMCDVDIRSSLLGNVIVTGGTSLIQGFSERLNKELSKRAPSS- 372 (426)
T ss_pred chhhcCcchhccccccccCCCCCccccCchHHHHhhhccChHHHHHHhhccEEEecCcchhhhHHHHHHHHHHHhCCcc-
Confidence 9999999998654322222222 23579999999999999999999999999999999999999999999999999987
Q ss_pred eEEEEecCCCCCccceeEeeeEEeecccccccccccHHHHHHcCc-hhhhhcCC
Q 037470 393 RVKVVSSGNATERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGA-SYIQRKCP 445 (445)
Q Consensus 393 ~v~v~~~~~~~~~~~~~W~Gasilasl~~f~~~~itr~eY~E~G~-~~~~~k~~ 445 (445)
+++++++.+..+|++++|+||||||||++|+++||||+||||+|. ..+.||||
T Consensus 373 rlki~as~~t~eR~~~~WlGGSILASLgtFqq~WiSKqEYEE~G~d~~ve~rc~ 426 (426)
T KOG0679|consen 373 RLKIIASGHTVERRFQSWLGGSILASLGTFQQLWISKQEYEEVGKDQLVERRCP 426 (426)
T ss_pred eEEEEecCceeeehhhhhhhhHHHhccccHHHHhhhHHHHHHhhhHHHHhhcCC
Confidence 999999988999999999999999999999999999999999999 88899998
No 2
>PTZ00452 actin; Provisional
Probab=100.00 E-value=2.4e-85 Score=648.25 Aligned_cols=364 Identities=34% Similarity=0.676 Sum_probs=326.2
Q ss_pred CCcEEEeCCCceeEeeecCCCCCCcccCcceeeecCCCcccccccccCCCccccCCCccCCcCCCCCcceEeccccccCc
Q 037470 7 VSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDDSANAERNSGSAIDSKNNVDSNKGKGKRKLYVGTQSLGFR 86 (445)
Q Consensus 7 ~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 86 (445)
.++||||+||+++|+||||++.|++++||++|+++.... .. +...+++++|+++.. .
T Consensus 5 ~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~--~~--------------------~~~~~~~~iG~~~~~-~ 61 (375)
T PTZ00452 5 YPAVVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDG--IF--------------------STFNKEYYVGEEAQA-K 61 (375)
T ss_pred CCEEEEECCCCeEEEeeCCCCCcCEEecceeEEECCccc--cc--------------------cccccceEEChhhhc-c
Confidence 458999999999999999999999999999999864310 00 012346799998754 5
Q ss_pred CCCeEEeccCCCCeecCHHHHHHHHHHHhccccCCCCCCCcEEEecCCCCCHHHHHHHhc---cccCccCCeeeccceE-
Q 037470 87 RDHMEVLSPLKDGVVVDWDIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNTQQQRESSAF---SFWVCVCGILVFCPVI- 162 (445)
Q Consensus 87 ~~~~~~~~P~~~g~i~d~d~~e~i~~~~~~~~L~~~~~~~~vll~ep~~~~~~~r~~~~e---E~~~~~~~~~~~~p~v- 162 (445)
+..+++++|+++|+|.|||++|.+|+|+|++.|+++|+++||+++||+++++..|++++| |+|+ +|++
T Consensus 62 ~~~~~l~~Pi~~G~I~dwd~~e~iw~~~f~~~l~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~--------vp~~~ 133 (375)
T PTZ00452 62 RGVLAIKEPIQNGIINSWDDIEIIWHHAFYNELCMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFN--------TPCLY 133 (375)
T ss_pred ccCcEEcccCcCCEEcCHHHHHHHHHHHHHhhcCCCcccCceeeecCCCCCHHHHHHHHHHHhhccC--------CceEE
Confidence 677899999999999999999999999999999999999999999999999999999999 9999 9999
Q ss_pred EechhhhhhhccCCceEEEEEcCCCceEEEEeecceecCccceEecccHHHHHHHHHHHHHhcCCcccCccccccccCCC
Q 037470 163 EFDALVLTSFALGRATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRYSFKRKENRP 242 (445)
Q Consensus 163 ~~~~~~la~~~~g~~tglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~p~~~~~~~~~~~ 242 (445)
+.++++|++|++|++||||||+|++.|+|+||+||++++++++++++||+++|++|.++|.+++..+..
T Consensus 134 ~~~~~~lslya~g~~tglVVDiG~~~t~v~PV~dG~~l~~~~~r~~~gG~~lt~~L~~lL~~~~~~~~~----------- 202 (375)
T PTZ00452 134 ISNEAVLSLYTSGKTIGLVVDSGEGVTHCVPVFEGHQIPQAITKINLAGRLCTDYLTQILQELGYSLTE----------- 202 (375)
T ss_pred EechHHHHHHHCCCceeeeecCCCCcceEEEEECCEEeccceEEeeccchHHHHHHHHHHHhcCCCCCC-----------
Confidence 999999999999999999999999999999999999999999999999999999999999887743311
Q ss_pred CCcceeccCCCCCchhHHhHhHHHHHHHHhhcceecCCCcCCccc---cCCCCCceeECCCCceEeeCcccccccccccC
Q 037470 243 GEFQIVDLDFPNTTESYKLYCQRVIASDIKECVCRAPDTPYDESA---YSNIPMTPYELPDGQVIEIGADRFKTPDVLFN 319 (445)
Q Consensus 243 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~iKe~~~~v~~~~~~~~~---~~~~~~~~~~lpdg~~i~l~~er~~~~E~lF~ 319 (445)
....+++++|||++|+++.+..++.. ..+.....|+||||+.|.++.|||.+||+||+
T Consensus 203 -------------------~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~LPDg~~i~l~~er~~~~E~LF~ 263 (375)
T PTZ00452 203 -------------------PHQRIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKLPDGNILTIKSQKFRCSEILFQ 263 (375)
T ss_pred -------------------HHHHHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEECCCCCEEEeehHHhcCcccccC
Confidence 23567899999999999976543321 11234568999999999999999999999999
Q ss_pred CCCCCCCCCCCCccCCCCCCCHHHHHHHHHHhCCHHhHHHHhcCccccCCCCchhhHHHHHHHHHhhhCCCCceEEEEec
Q 037470 320 PSLVQTIPGMENFAENIPFRGLPQMVIDSINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVVSS 399 (445)
Q Consensus 320 p~~~~~~~~~~~~~~~~~~~~L~~~I~~~i~~~~~d~r~~L~~nIvLtGG~s~i~Gl~~RL~~eL~~~~p~~~~v~v~~~ 399 (445)
|++++. + ..||+++|.++|++||+|+|+.|++||||+||+|++|||.+||++||++++|...+++|++
T Consensus 264 P~~~g~----~-------~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v~~- 331 (375)
T PTZ00452 264 PKLIGL----E-------VAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAA- 331 (375)
T ss_pred hhhcCC----C-------CCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCceeEEec-
Confidence 998753 3 6799999999999999999999999999999999999999999999999999888999988
Q ss_pred CCCCCccceeEeeeEEeecccccccccccHHHHHHcCchhhhhcCC
Q 037470 400 GNATERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKCP 445 (445)
Q Consensus 400 ~~~~~~~~~~W~Gasilasl~~f~~~~itr~eY~E~G~~~~~~k~~ 445 (445)
+.+|++++|+||||+|++++|+++||||+||+|+|+++++|||.
T Consensus 332 --~~~r~~~aW~GgSilasl~~f~~~~vtk~eYeE~G~~i~~~k~~ 375 (375)
T PTZ00452 332 --PPDRRFSAWIGGSIQCTLSTQQPQWIKRQEYDEQGPSIVHRKCF 375 (375)
T ss_pred --CCCcceeEEECchhhcCccchhhhEeEHHHHhccCcceeeeecC
Confidence 57899999999999999999999999999999999999999994
No 3
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=1.1e-85 Score=628.91 Aligned_cols=365 Identities=43% Similarity=0.766 Sum_probs=328.7
Q ss_pred CCCCCCCCcEEEeCCCceeEeeecCCCCCCcccCcceeeecCCCcccccccccCCCccccCCCccCCcCCCCCcceEecc
Q 037470 1 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDDSANAERNSGSAIDSKNNVDSNKGKGKRKLYVGT 80 (445)
Q Consensus 1 ~y~~~~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 80 (445)
+|..++..+||||+||..+|+||||++.|+.++||++++++..... .+...++.++|+
T Consensus 1 ~~~~~~~~~vViDnGsg~~KaGfag~~~P~~v~ps~vg~~~~~~~~----------------------~~~~~~~~~vg~ 58 (372)
T KOG0676|consen 1 SYEADDIQAVVIDNGSGFVKAGFAGDDAPRAVFPSIVGRPRHQGVM----------------------AGMTQKDTYVGD 58 (372)
T ss_pred CCCcCCcceEEEECCCceeecccCCCCCCceecceecccccccccc----------------------ccccccccccch
Confidence 5788899999999999999999999999999999999987754200 011346788999
Q ss_pred ccccCcCCCeEEeccCCCCeecCHHHHHHHHHHHhccccCCCCCCCcEEEecCCCCCHHHHHHHhc---cccCccCCeee
Q 037470 81 QSLGFRRDHMEVLSPLKDGVVVDWDIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNTQQQRESSAF---SFWVCVCGILV 157 (445)
Q Consensus 81 ~~~~~~~~~~~~~~P~~~g~i~d~d~~e~i~~~~~~~~L~~~~~~~~vll~ep~~~~~~~r~~~~e---E~~~~~~~~~~ 157 (445)
++...+ .+.+|+++|+|.|||+|+.||+|+|++.|.++|+++||+||||+++|+..||+++| |+|+
T Consensus 59 ~a~~~~----~l~~Pie~Giv~~wd~me~iw~~if~~~L~~~Pee~pvllte~pl~p~~nREk~tqi~FE~fn------- 127 (372)
T KOG0676|consen 59 EAESKR----TLKYPIERGIVTDWDDMEKIWHHLFYSELLVAPEEHPVLLTEPPLNPKANREKLTQIMFETFN------- 127 (372)
T ss_pred hhhccc----cccCccccccccchHHHHHHHHHHHHHhhccCcccCceEeecCCCCchHhHHHHHHHhhhhcC-------
Confidence 876533 68999999999999999999999999999999999999999999999999999999 9999
Q ss_pred ccceE-EechhhhhhhccCCceEEEEEcCCCceEEEEeecceecCccceEecccHHHHHHHHHHHHHhcCCcccCccccc
Q 037470 158 FCPVI-EFDALVLTSFALGRATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRYSFK 236 (445)
Q Consensus 158 ~~p~v-~~~~~~la~~~~g~~tglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~p~~~~~ 236 (445)
+|++ ++.++++ |++|++||+|||+|++.|+++||++|+++++++.++++||++||+||+..|.+++..+
T Consensus 128 -vpa~yva~qavl--ya~g~ttG~VvD~G~gvt~~vPI~eG~~lp~ai~~ldl~G~dlt~~l~~~L~~~g~s~------- 197 (372)
T KOG0676|consen 128 -VPALYVAIQAVL--YASGRTTGLVVDSGDGVTHVVPIYEGYALPHAILRLDLAGRDLTDYLLKQLRKRGYSF------- 197 (372)
T ss_pred -ccHhHHHHHHHH--HHcCCeeEEEEEcCCCceeeeecccccccchhhheecccchhhHHHHHHHHHhccccc-------
Confidence 9999 8777766 9999999999999999999999999999999999999999999999999998866332
Q ss_pred cccCCCCCcceeccCCCCCchhHHhHhHHHHHHHHhhcceecCCCcCCcccc---CCCCCceeECCCCceEeeCcccccc
Q 037470 237 RKENRPGEFQIVDLDFPNTTESYKLYCQRVIASDIKECVCRAPDTPYDESAY---SNIPMTPYELPDGQVIEIGADRFKT 313 (445)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~---~~~~~~~~~lpdg~~i~l~~er~~~ 313 (445)
......++++++||++||++.+..++... .......|+||||+.+.+++|||.+
T Consensus 198 -----------------------~~~~~~eIv~diKeklCyvald~~~e~~~~~~~~~l~~~y~lPDg~~i~i~~erf~~ 254 (372)
T KOG0676|consen 198 -----------------------TTSAEFEIVRDIKEKLCYVALDFEEEEETANTSSSLESSYELPDGQKITIGNERFRC 254 (372)
T ss_pred -----------------------ccccHHHHHHHhHhhhcccccccchhhhcccccccccccccCCCCCEEecCCccccc
Confidence 11356788999999999999865554432 2334566999999999999999999
Q ss_pred cccccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHhCCHHhHHHHhcCccccCCCCchhhHHHHHHHHHhhhCCCCce
Q 037470 314 PDVLFNPSLVQTIPGMENFAENIPFRGLPQMVIDSINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAAR 393 (445)
Q Consensus 314 ~E~lF~p~~~~~~~~~~~~~~~~~~~~L~~~I~~~i~~~~~d~r~~L~~nIvLtGG~s~i~Gl~~RL~~eL~~~~p~~~~ 393 (445)
||+||+|+..+. + ..+|++++.++|.+||+|+|++||.||||+||++++|||.+||++||..+.|+.++
T Consensus 255 pE~lFqP~~~g~----e-------~~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~kEl~~l~P~~~~ 323 (372)
T KOG0676|consen 255 PEVLFQPSLLGM----E-------SPGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFPGLADRLQKELQALAPSTIK 323 (372)
T ss_pred chhcCChhhcCC----C-------CCchhHHHHHHHHhCChhHhHHHHhheEEeCCcccchhHHHHHHHHHhhcCCCCcc
Confidence 999999999864 3 78999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCccceeEeeeEEeecccccccccccHHHHHHcCchhhhhcCC
Q 037470 394 VKVVSSGNATERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKCP 445 (445)
Q Consensus 394 v~v~~~~~~~~~~~~~W~Gasilasl~~f~~~~itr~eY~E~G~~~~~~k~~ 445 (445)
++|++ +++|.+++|+||||+|++++|+++||||+||+|+|+.+++|||-
T Consensus 324 ikv~~---pp~r~~s~WlGgSIlaslstfq~~witk~eY~e~g~~~~~rk~f 372 (372)
T KOG0676|consen 324 IKVIA---PPERKYSAWLGGSILASLSTFQQMWITKEEYEEHGPSIIHRKCF 372 (372)
T ss_pred eEEec---CcccccceecCceeEeecchHhhccccHHHHhhhCCceeeeccC
Confidence 99999 68888999999999999999999999999999999999999993
No 4
>PTZ00281 actin; Provisional
Probab=100.00 E-value=5.4e-84 Score=640.41 Aligned_cols=368 Identities=40% Similarity=0.747 Sum_probs=329.6
Q ss_pred CCCCCCcEEEeCCCceeEeeecCCCCCCcccCcceeeecCCCcccccccccCCCccccCCCccCCcCCCCCcceEecccc
Q 037470 3 GGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDDSANAERNSGSAIDSKNNVDSNKGKGKRKLYVGTQS 82 (445)
Q Consensus 3 ~~~~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 82 (445)
+||+..+||||+||+++|+||||++.|++++||++|+++.... .. +.+.+++++|+++
T Consensus 2 ~~~~~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~--~~--------------------~~~~~~~~~g~~~ 59 (376)
T PTZ00281 2 DGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGV--MV--------------------GMGQKDSYVGDEA 59 (376)
T ss_pred CCCcCCeEEEECCCCeEEEeeCCCCCCCeeccccceeecCccc--cc--------------------CcccCCeEECchh
Confidence 6889999999999999999999999999999999998764310 00 1123467999986
Q ss_pred ccCcCCCeEEeccCCCCeecCHHHHHHHHHHHhccccCCCCCCCcEEEecCCCCCHHHHHHHhc---cccCccCCeeecc
Q 037470 83 LGFRRDHMEVLSPLKDGVVVDWDIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNTQQQRESSAF---SFWVCVCGILVFC 159 (445)
Q Consensus 83 ~~~~~~~~~~~~P~~~g~i~d~d~~e~i~~~~~~~~L~~~~~~~~vll~ep~~~~~~~r~~~~e---E~~~~~~~~~~~~ 159 (445)
.. .+..+++++|+++|.|.|||+++.+|+|+|++.|.++|+++||+|+||+++++..|++++| |.|+ +
T Consensus 60 ~~-~~~~~~l~~Pi~~G~i~dwd~~e~l~~~~f~~~l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~--------v 130 (376)
T PTZ00281 60 QS-KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN--------T 130 (376)
T ss_pred hc-cccCcEEeccCcCCEEcCHHHHHHHHHHHHHhhccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccC--------C
Confidence 54 4667899999999999999999999999998999999999999999999999999999999 9999 9
Q ss_pred ceE-EechhhhhhhccCCceEEEEEcCCCceEEEEeecceecCccceEecccHHHHHHHHHHHHHhcCCcccCccccccc
Q 037470 160 PVI-EFDALVLTSFALGRATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRYSFKRK 238 (445)
Q Consensus 160 p~v-~~~~~~la~~~~g~~tglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~p~~~~~~~ 238 (445)
|++ +.++++|++|++|++||||||+|++.|+|+||+||+++.++++++++||++||++|+++|.+++..+.
T Consensus 131 p~~~~~~~~~ls~ya~g~~tglVVDiG~~~t~v~PV~dG~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~-------- 202 (376)
T PTZ00281 131 PAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFT-------- 202 (376)
T ss_pred ceeEeeccHHHHHHhcCCceEEEEECCCceEEEEEEEecccchhheeeccCcHHHHHHHHHHHHHhcCCCCC--------
Confidence 999 99999999999999999999999999999999999999999999999999999999999988774321
Q ss_pred cCCCCCcceeccCCCCCchhHHhHhHHHHHHHHhhcceecCCCcCCcccc---CCCCCceeECCCCceEeeCcccccccc
Q 037470 239 ENRPGEFQIVDLDFPNTTESYKLYCQRVIASDIKECVCRAPDTPYDESAY---SNIPMTPYELPDGQVIEIGADRFKTPD 315 (445)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~---~~~~~~~~~lpdg~~i~l~~er~~~~E 315 (445)
.....+++++|||++|+|+.+...+... .......|.||||+.|.++.|||.+||
T Consensus 203 ----------------------~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~y~LPdg~~i~i~~er~~~~E 260 (376)
T PTZ00281 203 ----------------------TTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELPDGQVITIGNERFRCPE 260 (376)
T ss_pred ----------------------cHHHHHHHHHHHHhcEEecCCchHHHHhhhcCcccceeEECCCCCEEEeeHHHeeCcc
Confidence 1245678999999999998754332211 123356899999999999999999999
Q ss_pred cccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHhCCHHhHHHHhcCccccCCCCchhhHHHHHHHHHhhhCCCCceEE
Q 037470 316 VLFNPSLVQTIPGMENFAENIPFRGLPQMVIDSINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVK 395 (445)
Q Consensus 316 ~lF~p~~~~~~~~~~~~~~~~~~~~L~~~I~~~i~~~~~d~r~~L~~nIvLtGG~s~i~Gl~~RL~~eL~~~~p~~~~v~ 395 (445)
+||+|++.+. + ..+|+++|.++|.+||+|+|+.|++||||+||+|+||||.+||++||++++|...+++
T Consensus 261 ~LF~P~~~~~----~-------~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~ 329 (376)
T PTZ00281 261 ALFQPSFLGM----E-------SAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIK 329 (376)
T ss_pred cccChhhcCC----C-------CCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHhCCCCcceE
Confidence 9999998753 2 6799999999999999999999999999999999999999999999999999888999
Q ss_pred EEecCCCCCccceeEeeeEEeecccccccccccHHHHHHcCchhhhhcCC
Q 037470 396 VVSSGNATERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKCP 445 (445)
Q Consensus 396 v~~~~~~~~~~~~~W~Gasilasl~~f~~~~itr~eY~E~G~~~~~~k~~ 445 (445)
|+. +.+|++++|+||||+|++++|+++||||+||+|+|+++++|||.
T Consensus 330 v~~---~~~r~~~aW~Ggsilasl~~f~~~~vtk~eY~E~G~~~~~~k~~ 376 (376)
T PTZ00281 330 IIA---PPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF 376 (376)
T ss_pred Eec---CCCCceeEEECcccccCcccHhhceeeHHHHhhhCchheeeecC
Confidence 998 56899999999999999999999999999999999999999994
No 5
>PTZ00466 actin-like protein; Provisional
Probab=100.00 E-value=7e-84 Score=638.24 Aligned_cols=362 Identities=33% Similarity=0.642 Sum_probs=324.3
Q ss_pred CCcEEEeCCCceeEeeecCCCCCCcccCcceeeecCCCcccccccccCCCccccCCCccCCcCCCCCcceEeccccccCc
Q 037470 7 VSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDDSANAERNSGSAIDSKNNVDSNKGKGKRKLYVGTQSLGFR 86 (445)
Q Consensus 7 ~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 86 (445)
..+||||+||+++|+||||++.|++++||++|+++.... .. +...++.++|+++.. .
T Consensus 12 ~~~iViD~GS~~~K~G~ag~~~P~~~~ps~vg~~k~~~~--~~--------------------~~~~~~~~vG~~~~~-~ 68 (380)
T PTZ00466 12 NQPIIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRV--MA--------------------GAVEGNIFVGNKAEE-Y 68 (380)
T ss_pred CCeEEEECCCCcEEEeeCCCCCCCEeccceeeeecCccc--cc--------------------cCCCCCeEECchhhh-h
Confidence 458999999999999999999999999999999864310 00 012346899998754 4
Q ss_pred CCCeEEeccCCCCeecCHHHHHHHHHHHhccccCCCCCCCcEEEecCCCCCHHHHHHHhc---cccCccCCeeeccceE-
Q 037470 87 RDHMEVLSPLKDGVVVDWDIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNTQQQRESSAF---SFWVCVCGILVFCPVI- 162 (445)
Q Consensus 87 ~~~~~~~~P~~~g~i~d~d~~e~i~~~~~~~~L~~~~~~~~vll~ep~~~~~~~r~~~~e---E~~~~~~~~~~~~p~v- 162 (445)
++.+++++|+++|+|.|||.+|.+|+|+| +.|+++|+++||+|+|++++++..|++++| |+|+ +|++
T Consensus 69 ~~~~~l~~Pi~~G~v~dwd~~e~iw~~~f-~~l~v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~--------~p~~~ 139 (380)
T PTZ00466 69 RGLLKVTYPINHGIIENWNDMENIWIHVY-NSMKINSEEHPVLLTEAPLNPQKNKEKIAEVFFETFN--------VPALF 139 (380)
T ss_pred CcCceeCccccCCeECCHHHHHHHHHHHH-hhcccCCccCeEEEecCccccHHHHHHHHHHHhccCC--------CCeEE
Confidence 56788999999999999999999999999 789999999999999999999999999999 9999 9999
Q ss_pred EechhhhhhhccCCceEEEEEcCCCceEEEEeecceecCccceEecccHHHHHHHHHHHHHhcCCcccCccccccccCCC
Q 037470 163 EFDALVLTSFALGRATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRYSFKRKENRP 242 (445)
Q Consensus 163 ~~~~~~la~~~~g~~tglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~p~~~~~~~~~~~ 242 (445)
+.++++|++|++|++||+|||+|++.|+|+||+||+++.+++.++++||+++|++|+++|.+++..+.
T Consensus 140 ~~~~~~lsl~a~g~~tglVVD~G~~~t~v~PV~~G~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~------------ 207 (380)
T PTZ00466 140 ISIQAILSLYSCGKTNGTVLDCGDGVCHCVSIYEGYSITNTITRTDVAGRDITTYLGYLLRKNGHLFN------------ 207 (380)
T ss_pred EecchHHHHHhcCCceEEEEeCCCCceEEEEEECCEEeecceeEecCchhHHHHHHHHHHHhcCCCCC------------
Confidence 99999999999999999999999999999999999999999999999999999999999988764221
Q ss_pred CCcceeccCCCCCchhHHhHhHHHHHHHHhhcceecCCCcCCccc--cCCCCCceeECCCCceEeeCcccccccccccCC
Q 037470 243 GEFQIVDLDFPNTTESYKLYCQRVIASDIKECVCRAPDTPYDESA--YSNIPMTPYELPDGQVIEIGADRFKTPDVLFNP 320 (445)
Q Consensus 243 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~iKe~~~~v~~~~~~~~~--~~~~~~~~~~lpdg~~i~l~~er~~~~E~lF~p 320 (445)
.....++++++||++|+|+.+...+.. ........|+||||+.|.++.|||.+||+||+|
T Consensus 208 ------------------~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~~~y~LPdg~~i~l~~er~~~~E~LF~P 269 (380)
T PTZ00466 208 ------------------TSAEMEVVKNMKENCCYVSFNMNKEKNSSEKALTTLPYILPDGSQILIGSERYRAPEVLFNP 269 (380)
T ss_pred ------------------cHHHHHHHHHHHHhCeEecCChHHHHhhccccccceeEECCCCcEEEEchHHhcCcccccCc
Confidence 124567899999999999876543322 112234789999999999999999999999999
Q ss_pred CCCCCCCCCCCccCCCCCCCHHHHHHHHHHhCCHHhHHHHhcCccccCCCCchhhHHHHHHHHHhhhCCCCceEEEEecC
Q 037470 321 SLVQTIPGMENFAENIPFRGLPQMVIDSINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVVSSG 400 (445)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~L~~~I~~~i~~~~~d~r~~L~~nIvLtGG~s~i~Gl~~RL~~eL~~~~p~~~~v~v~~~~ 400 (445)
++++. + ..||+++|.++|.+||+|.|+.|++||||+||+|++|||.+||++||+++.|...+++|+.
T Consensus 270 ~~~g~----~-------~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~-- 336 (380)
T PTZ00466 270 SILGL----E-------YLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISA-- 336 (380)
T ss_pred cccCC----C-------CCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEec--
Confidence 98853 3 6799999999999999999999999999999999999999999999999999988999987
Q ss_pred CCCCccceeEeeeEEeecccccccccccHHHHHHcCchhhhhcC
Q 037470 401 NATERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKC 444 (445)
Q Consensus 401 ~~~~~~~~~W~Gasilasl~~f~~~~itr~eY~E~G~~~~~~k~ 444 (445)
+.+|++++|+||||+|++++|+++||||+||+|+|+++++|||
T Consensus 337 -~~~r~~~aW~GgSilasl~~f~~~~itk~eYeE~G~~iv~rk~ 379 (380)
T PTZ00466 337 -PPERKFSTFIGGSILASLATFKKIWISKQEFDEYGSVILHRKT 379 (380)
T ss_pred -CCCCceeEEECchhhcCccchhhhEeEHHHHhhhCcHhheeec
Confidence 5789999999999999999999999999999999999999998
No 6
>PTZ00004 actin-2; Provisional
Probab=100.00 E-value=3.6e-81 Score=621.10 Aligned_cols=368 Identities=40% Similarity=0.721 Sum_probs=326.6
Q ss_pred CCCCCcEEEeCCCceeEeeecCCCCCCcccCcceeeecCCCcccccccccCCCccccCCCccCCcCCCCCcceEeccccc
Q 037470 4 GDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDDSANAERNSGSAIDSKNNVDSNKGKGKRKLYVGTQSL 83 (445)
Q Consensus 4 ~~~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 83 (445)
-++.++||||+||+++|+||||++.|++++||++++++..... . +...+.+++|+++.
T Consensus 3 ~~~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~--~--------------------~~~~~~~~~g~~~~ 60 (378)
T PTZ00004 3 VEETNAAVVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPGIM--V--------------------GMEEKDCYVGDEAQ 60 (378)
T ss_pred CCCCCeEEEECCCCeEEEeeCCCCCCCEEccceeEEecccccc--c--------------------CcCCCceEECchhh
Confidence 4677899999999999999999999999999999998643100 0 01224678999865
Q ss_pred cCcCCCeEEeccCCCCeecCHHHHHHHHHHHhccccCCCCCCCcEEEecCCCCCHHHHHHHhc---cccCccCCeeeccc
Q 037470 84 GFRRDHMEVLSPLKDGVVVDWDIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNTQQQRESSAF---SFWVCVCGILVFCP 160 (445)
Q Consensus 84 ~~~~~~~~~~~P~~~g~i~d~d~~e~i~~~~~~~~L~~~~~~~~vll~ep~~~~~~~r~~~~e---E~~~~~~~~~~~~p 160 (445)
. .++.+++++|+++|.|.|||+++.+|+|+|++.|++++.++||+++||+++++..|++++| |.|+ +|
T Consensus 61 ~-~~~~~~l~~Pi~~G~i~d~d~~e~i~~~~~~~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~--------~~ 131 (378)
T PTZ00004 61 D-KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHN--------VP 131 (378)
T ss_pred c-ccccceEcccCcCCEEcCHHHHHHHHHHHHHhhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcC--------Cc
Confidence 4 4566889999999999999999999999998899999999999999999999999999999 9999 99
Q ss_pred eE-EechhhhhhhccCCceEEEEEcCCCceEEEEeecceecCccceEecccHHHHHHHHHHHHHhcCCcccCcccccccc
Q 037470 161 VI-EFDALVLTSFALGRATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRYSFKRKE 239 (445)
Q Consensus 161 ~v-~~~~~~la~~~~g~~tglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~p~~~~~~~~ 239 (445)
++ +.++++|++|++|++||||||+|++.|+|+||+||+++.++++++++||+++|++|+++|.+++..+.+
T Consensus 132 ~~~~~~~~~ls~ya~g~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~-------- 203 (378)
T PTZ00004 132 AMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYSLPHAIHRLDVAGRDLTEYMMKILHERGTTFTT-------- 203 (378)
T ss_pred eEEeeccHHHHHHhcCCceEEEEECCCCcEEEEEEECCEEeecceeeecccHHHHHHHHHHHHHhcCCCCCc--------
Confidence 99 999999999999999999999999999999999999999999999999999999999999888754321
Q ss_pred CCCCCcceeccCCCCCchhHHhHhHHHHHHHHhhcceecCCCcCCcccc----CCCCCceeECCCCceEeeCcccccccc
Q 037470 240 NRPGEFQIVDLDFPNTTESYKLYCQRVIASDIKECVCRAPDTPYDESAY----SNIPMTPYELPDGQVIEIGADRFKTPD 315 (445)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~----~~~~~~~~~lpdg~~i~l~~er~~~~E 315 (445)
....++++++||++|+|+.+..++... .+.....|+||||+.+.++.|||.+||
T Consensus 204 ----------------------~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~~y~lPdg~~i~l~~er~~~~E 261 (378)
T PTZ00004 204 ----------------------TAEKEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEESYELPDGTIITVGSERFRCPE 261 (378)
T ss_pred ----------------------HHHHHHHHHHhhcceeecCCHHHHHhhhhcCccccceEEECCCCCEEEEcHHHeeCcc
Confidence 235678999999999998764433221 111256899999999999999999999
Q ss_pred cccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHhCCHHhHHHHhcCccccCCCCchhhHHHHHHHHHhhhCCCCceEE
Q 037470 316 VLFNPSLVQTIPGMENFAENIPFRGLPQMVIDSINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVK 395 (445)
Q Consensus 316 ~lF~p~~~~~~~~~~~~~~~~~~~~L~~~I~~~i~~~~~d~r~~L~~nIvLtGG~s~i~Gl~~RL~~eL~~~~p~~~~v~ 395 (445)
+||+|++++.. ...||+++|.++|.+||+|+|+.|++||||+||+|++|||.+||++||++++|...+++
T Consensus 262 ~LF~P~~~~~~----------~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~~ 331 (378)
T PTZ00004 262 ALFQPSLIGKE----------EPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKIK 331 (378)
T ss_pred cccChhhcCcc----------ccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCccEE
Confidence 99999987531 15699999999999999999999999999999999999999999999999999888999
Q ss_pred EEecCCCCCccceeEeeeEEeecccccccccccHHHHHHcCchhhhhcCC
Q 037470 396 VVSSGNATERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKCP 445 (445)
Q Consensus 396 v~~~~~~~~~~~~~W~Gasilasl~~f~~~~itr~eY~E~G~~~~~~k~~ 445 (445)
|.. +.+|++++|+||||+|++++|+++||||+||+|+|+++++|||-
T Consensus 332 v~~---~~~~~~~aW~Ggsilas~~~f~~~~vtk~eYeE~G~~~~~rk~~ 378 (378)
T PTZ00004 332 VVA---PPERKYSVWIGGSILSSLPTFQQMWVTKEEYDESGPSIVHRKCF 378 (378)
T ss_pred Eec---CCCCceeEEECcccccCccchhhhEeEHHHHhhhCcceEEeecC
Confidence 988 57899999999999999999999999999999999999999983
No 7
>PTZ00280 Actin-related protein 3; Provisional
Probab=100.00 E-value=2.2e-77 Score=601.35 Aligned_cols=366 Identities=30% Similarity=0.551 Sum_probs=315.2
Q ss_pred CCcEEEeCCCceeEeeecCCCCCCcccCcceeeecCCCcccccccccCCCccccCCCccCCcCCCCCcceEeccccccCc
Q 037470 7 VSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDDSANAERNSGSAIDSKNNVDSNKGKGKRKLYVGTQSLGFR 86 (445)
Q Consensus 7 ~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 86 (445)
..+||||+||+++||||||++.|++++||++|+++..... .+ .......++++|+++.. .
T Consensus 4 ~~~iViD~GS~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~--~~-----------------~~~~~~~~~~vG~ea~~-~ 63 (414)
T PTZ00280 4 LPVVVIDNGTGYTKMGYAGNTEPTYIIPTLIADNSKQSRR--RS-----------------KKGFEDLDFYIGDEALA-A 63 (414)
T ss_pred CCeEEEECCCCceEeeeCCCCCCCEEecceeEEecccccc--cc-----------------ccccccCCEEEcchhhh-C
Confidence 5689999999999999999999999999999987642100 00 00001236889998765 3
Q ss_pred CCCeEEeccCCCCeecCHHHHHHHHHHHhccccCCCCCCCcEEEecCCCCCHHHHHHHhc---cccCccCCeeeccceE-
Q 037470 87 RDHMEVLSPLKDGVVVDWDIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNTQQQRESSAF---SFWVCVCGILVFCPVI- 162 (445)
Q Consensus 87 ~~~~~~~~P~~~g~i~d~d~~e~i~~~~~~~~L~~~~~~~~vll~ep~~~~~~~r~~~~e---E~~~~~~~~~~~~p~v- 162 (445)
+..+++++|+++|+|.|||.+|.+|+|+|++.|+++|.++|++|+||+++++..|++++| |.|+ +|++
T Consensus 64 ~~~~~l~~Pi~~G~I~dwd~~e~l~~~~~~~~L~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~--------~p~i~ 135 (414)
T PTZ00280 64 SKSYTLTYPMKHGIVEDWDLMEKFWEQCIFKYLRCEPEEHYFILTEPPMNPPENREYTAEIMFETFN--------VKGLY 135 (414)
T ss_pred cCCcEEecCccCCEeCCHHHHHHHHHHHHHHhhccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccC--------CCeEE
Confidence 456899999999999999999999999998999999999999999999999999999999 9999 9999
Q ss_pred Eechhhhhhhcc----------CCceEEEEEcCCCceEEEEeecceecCccceEecccHHHHHHHHHHHHHhcCCcccCc
Q 037470 163 EFDALVLTSFAL----------GRATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKSLESKGITIKPR 232 (445)
Q Consensus 163 ~~~~~~la~~~~----------g~~tglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~p~ 232 (445)
+..+++|++|++ |+++|||||+|++.|+|+||++|+++.++++++++||++||++|.++|++++..+.+
T Consensus 136 ~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~~G~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~- 214 (414)
T PTZ00280 136 IAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVDGYVIGSSIKHIPLAGRDITNFIQQMLRERGEPIPA- 214 (414)
T ss_pred EecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEECCEEcccceEEecCcHHHHHHHHHHHHHHcCCCCCc-
Confidence 999999999999 999999999999999999999999999999999999999999999999887754321
Q ss_pred cccccccCCCCCcceeccCCCCCchhHHhHhHHHHHHHHhhcceecCCCcCCcccc----CCCCCceeECCC---C--ce
Q 037470 233 YSFKRKENRPGEFQIVDLDFPNTTESYKLYCQRVIASDIKECVCRAPDTPYDESAY----SNIPMTPYELPD---G--QV 303 (445)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~----~~~~~~~~~lpd---g--~~ 303 (445)
....+++++|||++|+++.+..++... .......|.+|| | ..
T Consensus 215 -----------------------------~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~d~~~g~~~~ 265 (414)
T PTZ00280 215 -----------------------------EDILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNHFKKYTAVNSVTKKPYT 265 (414)
T ss_pred -----------------------------HHHHHHHHHHHHhcCcccCcHHHHHHHhhcCcccccceEECCCCCCCCccE
Confidence 134578999999999998753322111 111335688887 3 38
Q ss_pred EeeCcccccccccccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHhCCHHhHHHHhcCccccCCCCchhhHHHHHHHH
Q 037470 304 IEIGADRFKTPDVLFNPSLVQTIPGMENFAENIPFRGLPQMVIDSINKCDVDIRRELFSSILLAGGTASMQQLKERLEKD 383 (445)
Q Consensus 304 i~l~~er~~~~E~lF~p~~~~~~~~~~~~~~~~~~~~L~~~I~~~i~~~~~d~r~~L~~nIvLtGG~s~i~Gl~~RL~~e 383 (445)
+.++.|||.+||+||+|++++. + ...+|+++|.++|++||+|+|++|++||||+||+|+||||.+||++|
T Consensus 266 i~l~~erf~~~E~LF~P~~~~~----~------~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~E 335 (414)
T PTZ00280 266 VDVGYERFLGPEMFFHPEIFSS----E------WTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRD 335 (414)
T ss_pred EEechHHhcCcccccChhhcCC----c------cCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHHHHHHHH
Confidence 9999999999999999988742 1 14599999999999999999999999999999999999999999999
Q ss_pred HhhhC----------------CCCceEEEEecCCCCCccceeEeeeEEeecccccccccccHHHHHHcCchhhhhc
Q 037470 384 LLEES----------------PQAARVKVVSSGNATERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRK 443 (445)
Q Consensus 384 L~~~~----------------p~~~~v~v~~~~~~~~~~~~~W~Gasilasl~~f~~~~itr~eY~E~G~~~~~~k 443 (445)
|++++ |..++++|++ ++++++++|+||||+|++++|+++||||+||+|+|+++++||
T Consensus 336 l~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~---~~~~~~~~W~GgSilas~~~f~~~~itk~eY~E~G~~i~~~~ 408 (414)
T PTZ00280 336 VRKRVDRRLKKAEELSGGKLKPIPIDVNVVS---HPRQRYAVWYGGSMLASSPEFEKVCHTKAEYDEYGPSICRYN 408 (414)
T ss_pred HHHhccccccccccccccccCCCCceEEEec---CCccceeEEEChhhcccCcchhhheEEHHHHhccChHheeec
Confidence 99987 3466888887 457899999999999999999999999999999999999987
No 8
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=100.00 E-value=2.3e-78 Score=607.70 Aligned_cols=387 Identities=45% Similarity=0.789 Sum_probs=326.2
Q ss_pred CCCCCcEEEeCCCceeEeeecCCCCCCcccCcceeeecCCCcccccccccCCCccccCCCccCCcCCCCCcceEeccccc
Q 037470 4 GDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDDSANAERNSGSAIDSKNNVDSNKGKGKRKLYVGTQSL 83 (445)
Q Consensus 4 ~~~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 83 (445)
||+.++||||+||++||+||||++.|++++||+++++.... ...++++|+++.
T Consensus 1 ~d~~~~vViD~Gs~~~k~G~age~~P~~v~ps~~~~~~~~~---------------------------~~~~~~~g~~~~ 53 (393)
T PF00022_consen 1 GDENKPVVIDNGSSTIKAGFAGEDLPRVVIPSVVGRPRDKN---------------------------SSNDYYVGDEAL 53 (393)
T ss_dssp -TSSSEEEEEECSSEEEEEETTSSS-SEEEESEEEEESSSS---------------------------SSSSCEETHHHH
T ss_pred CCCCCEEEEECCCceEEEEECCCCCCCCcCCCccccccccc---------------------------cceeEEeecccc
Confidence 68999999999999999999999999999999999886431 112678998755
Q ss_pred cCcCCCeEEeccCCCCeecCHHHHHHHHHHHhccccCCCCCCCcEEEecCCCCCHHHHHHHhc---cccCccCCeeeccc
Q 037470 84 GFRRDHMEVLSPLKDGVVVDWDIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNTQQQRESSAF---SFWVCVCGILVFCP 160 (445)
Q Consensus 84 ~~~~~~~~~~~P~~~g~i~d~d~~e~i~~~~~~~~L~~~~~~~~vll~ep~~~~~~~r~~~~e---E~~~~~~~~~~~~p 160 (445)
. ....+.+.+|+++|.|.|||.++.+|+|+|.+.|.++++++||+|++|+++++..|+++++ |+|+ +|
T Consensus 54 ~-~~~~~~~~~p~~~g~i~~~~~~e~i~~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~e~lfE~~~--------~~ 124 (393)
T PF00022_consen 54 S-PRSNLELRSPIENGVIVDWDALEEIWDYIFSNLLKVDPSDHPVLLTEPPFNPRSQREKLAEILFEKFG--------VP 124 (393)
T ss_dssp H-TGTGEEEEESEETTEESSHHHHHHHHHHHHHTTT-SSGGGSEEEEEESTT--HHHHHHHHHHHHHTS----------S
T ss_pred c-chhheeeeeeccccccccccccccccccccccccccccccceeeeeccccCCchhhhhhhhhhhcccc--------cc
Confidence 5 5677899999999999999999999999998889999999999999999999999999999 9999 99
Q ss_pred eE-EechhhhhhhccCCceEEEEEcCCCceEEEEeecceecCccceEecccHHHHHHHHHHHHHhcCCcccCcccccccc
Q 037470 161 VI-EFDALVLTSFALGRATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRYSFKRKE 239 (445)
Q Consensus 161 ~v-~~~~~~la~~~~g~~tglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~p~~~~~~~~ 239 (445)
++ ++++++|++|++|++||||||+|++.|+|+||+||+++.++++++++||++++++|+++|+++++.+.|.+.++.+.
T Consensus 125 ~v~~~~~~~~a~~~~g~~tglVVD~G~~~t~v~pV~dG~~~~~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~ 204 (393)
T PF00022_consen 125 SVYFIPSPLLALYASGRTTGLVVDIGYSSTSVVPVVDGYVLPHSIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKS 204 (393)
T ss_dssp EEEEEEHHHHHHHHTTBSSEEEEEESSS-EEEEEEETTEE-GGGBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHC
T ss_pred eeeeeecccccccccccccccccccceeeeeeeeeeeccccccccccccccHHHHHHHHHHHHHhhcccccccccccccc
Confidence 99 99999999999999999999999999999999999999999999999999999999999999988877766654421
Q ss_pred CCCCCcceeccCCCCCchhHHhHhHHHHHHHHhhcceecCCCcCC--ccccCCCCCceeECCCCceEeeCcccccccccc
Q 037470 240 NRPGEFQIVDLDFPNTTESYKLYCQRVIASDIKECVCRAPDTPYD--ESAYSNIPMTPYELPDGQVIEIGADRFKTPDVL 317 (445)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~iKe~~~~v~~~~~~--~~~~~~~~~~~~~lpdg~~i~l~~er~~~~E~l 317 (445)
.. ...++..+....+++++|+++|+++.+... ...........|.||||+.+.++.|||.+||+|
T Consensus 205 ~~-------------~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~lPdg~~i~~~~er~~~~E~L 271 (393)
T PF00022_consen 205 PV-------------EGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYELPDGQTIILGKERFRIPEIL 271 (393)
T ss_dssp CC--------------TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE-TTSSEEEESTHHHHHHHTT
T ss_pred cc-------------ccccccchhhhccchhccchhhhcccccccccccccccccceecccccccccccccccccccccc
Confidence 11 023455567788999999999999987653 122245667889999999999999999999999
Q ss_pred cCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHhCCHHhHHHHhcCccccCCCCchhhHHHHHHHHHhhhCCCCceEEEE
Q 037470 318 FNPSLVQTIPGMENFAENIPFRGLPQMVIDSINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVV 397 (445)
Q Consensus 318 F~p~~~~~~~~~~~~~~~~~~~~L~~~I~~~i~~~~~d~r~~L~~nIvLtGG~s~i~Gl~~RL~~eL~~~~p~~~~v~v~ 397 (445)
|+|+..+... ........+|+++|.++|++||+|.|+.|++|||||||+|++|||.+||++||..+.|...+++|+
T Consensus 272 F~p~~~~~~~----~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~ 347 (393)
T PF00022_consen 272 FNPSLIGIDS----ASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSLLPSSTKVKVI 347 (393)
T ss_dssp TSGGGGTSSS----TS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHSGTTSTEEEE
T ss_pred cccccccccc----cccccccchhhhhhhhhhhccccccccccccceEEecccccccchHHHHHHHhhhhhhccccceec
Confidence 9999875410 000012359999999999999999999999999999999999999999999999999988899999
Q ss_pred ecCCCCCccceeEeeeEEeecccccccccccHHHHHHcCchhhhhcCC
Q 037470 398 SSGNATERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKCP 445 (445)
Q Consensus 398 ~~~~~~~~~~~~W~Gasilasl~~f~~~~itr~eY~E~G~~~~~~k~~ 445 (445)
.++. +|.+++|+||||+|++++|+++||||+||+|+|+++|+|||.
T Consensus 348 ~~~~--~~~~~aW~Ggsilasl~~f~~~~itr~eYeE~G~~~i~rkc~ 393 (393)
T PF00022_consen 348 APPS--DRQFAAWIGGSILASLSSFQSFWITREEYEEYGPSIIHRKCF 393 (393)
T ss_dssp --T---TTTSHHHHHHHHHHTSGGGGGTSEEHHHHHHHGGGGHHHHT-
T ss_pred cCch--hhhhcccccceeeeccccccceeeeHHHHhCcCcceeeecCC
Confidence 8422 899999999999999999999999999999999999999995
No 9
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=100.00 E-value=7e-77 Score=523.81 Aligned_cols=367 Identities=32% Similarity=0.563 Sum_probs=322.0
Q ss_pred CCCCcEEEeCCCceeEeeecCCCCCCcccCcceeeecCCCcccccccccCCCccccCCCccCCcCCCCCcceEecccccc
Q 037470 5 DEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDDSANAERNSGSAIDSKNNVDSNKGKGKRKLYVGTQSLG 84 (445)
Q Consensus 5 ~~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 84 (445)
|..++||+|+|+.++|+||||+..|.++||+.||+|--.. ..+.+ ...-+++.+|+++..
T Consensus 2 d~~~viV~DnGTGfVKcGyAg~NFP~~~FPs~VGRPilR~-~e~~g-------------------~~~iKD~mvGdease 61 (389)
T KOG0677|consen 2 DSRNVIVCDNGTGFVKCGYAGENFPTHIFPSIVGRPILRA-EEKVG-------------------NIEIKDLMVGDEASE 61 (389)
T ss_pred CCCCeEEEeCCCceEEeccccCCCcccccchhcCchhhhh-hhhcc-------------------CeehhhheccchHHH
Confidence 5678999999999999999999999999999999985321 01111 113368899998744
Q ss_pred CcCCCeEEeccCCCCeecCHHHHHHHHHHHhccccCCCCCCCcEEEecCCCCCHHHHHHHhc---cccCccCCeeeccce
Q 037470 85 FRRDHMEVLSPLKDGVVVDWDIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNTQQQRESSAF---SFWVCVCGILVFCPV 161 (445)
Q Consensus 85 ~~~~~~~~~~P~~~g~i~d~d~~e~i~~~~~~~~L~~~~~~~~vll~ep~~~~~~~r~~~~e---E~~~~~~~~~~~~p~ 161 (445)
-+.-+++.+|+++|+|.|||+|+.+|+|.|.++|+++|.+..++||||+++|.+.||+++| |+|+ +.+
T Consensus 62 -lRs~L~i~YPmeNGivrnwddM~h~WDytF~ekl~idp~~~KiLLTePPmNP~kNREKm~evMFEkY~--------F~g 132 (389)
T KOG0677|consen 62 -LRSLLDINYPMENGIVRNWDDMEHVWDYTFGEKLKIDPTNCKILLTEPPMNPTKNREKMIEVMFEKYG--------FGG 132 (389)
T ss_pred -HHHHHhcCCccccccccChHHHHHHHHhhhhhhccCCCccCeEEeeCCCCCccccHHHHHHHHHHHcC--------CCe
Confidence 2455779999999999999999999999999999999999999999999999999999999 9999 999
Q ss_pred E-EechhhhhhhccCCceEEEEEcCCCceEEEEeecceecCccceEecccHHHHHHHHHHHHHhcCCcccCccccccccC
Q 037470 162 I-EFDALVLTSFALGRATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRYSFKRKEN 240 (445)
Q Consensus 162 v-~~~~~~la~~~~g~~tglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~p~~~~~~~~~ 240 (445)
+ ++-|+++++||.|..||+|||.|.+.|+|+||++|+++++-.++++++|+++|+||.++|..+|+.+.
T Consensus 133 vyvaiQAVLtLYAQGL~tGvVvDSGDGVTHi~PVye~~~l~HLtrRldvAGRdiTryLi~LLl~rGYafN---------- 202 (389)
T KOG0677|consen 133 VYVAIQAVLTLYAQGLLTGVVVDSGDGVTHIVPVYEGFVLPHLTRRLDVAGRDITRYLIKLLLRRGYAFN---------- 202 (389)
T ss_pred EEehHHHHHHHHHhcccceEEEecCCCeeEEeeeecceehhhhhhhccccchhHHHHHHHHHHhhccccc----------
Confidence 9 99999999999999999999999999999999999999999999999999999999999999996542
Q ss_pred CCCCcceeccCCCCCchhHHhHhHHHHHHHHhhcceecCCCcCCccc---cCCCCCceeECCCCceEeeCcccccccccc
Q 037470 241 RPGEFQIVDLDFPNTTESYKLYCQRVIASDIKECVCRAPDTPYDESA---YSNIPMTPYELPDGQVIEIGADRFKTPDVL 317 (445)
Q Consensus 241 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~iKe~~~~v~~~~~~~~~---~~~~~~~~~~lpdg~~i~l~~er~~~~E~l 317 (445)
+..+.+.+++|||++||++-+...+.. .......+|.||||..|.++.|||.+||+|
T Consensus 203 --------------------~tADFETVR~iKEKLCYisYd~e~e~kLalETTvLv~~YtLPDGRvIkvG~ERFeAPE~L 262 (389)
T KOG0677|consen 203 --------------------HTADFETVREIKEKLCYISYDLELEQKLALETTVLVESYTLPDGRVIKVGGERFEAPEAL 262 (389)
T ss_pred --------------------cccchHHHHHHHhhheeEeechhhhhHhhhhheeeeeeeecCCCcEEEecceeccCchhh
Confidence 235668899999999999975433322 123345789999999999999999999999
Q ss_pred cCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHhCCHHhHHHHhcCccccCCCCchhhHHHHHHHHHhhhCC--------
Q 037470 318 FNPSLVQTIPGMENFAENIPFRGLPQMVIDSINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESP-------- 389 (445)
Q Consensus 318 F~p~~~~~~~~~~~~~~~~~~~~L~~~I~~~i~~~~~d~r~~L~~nIvLtGG~s~i~Gl~~RL~~eL~~~~p-------- 389 (445)
|+|.+++. + ..|+.+++.++|+..++|.|.+||++|||+||+++.|||..||++||+++.-
T Consensus 263 FqP~Li~V----E-------~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkElkqlyl~rVL~~d~ 331 (389)
T KOG0677|consen 263 FQPHLINV----E-------GPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKELKQLYLDRVLKGDT 331 (389)
T ss_pred cCcceecc----C-------CCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHHHHHHHHHHHHcCCh
Confidence 99999965 2 7899999999999999999999999999999999999999999999998752
Q ss_pred ---CCceEEEEecCCCCCccceeEeeeEEeecc-cccccccccHHHHHHcCchhhhhcC
Q 037470 390 ---QAARVKVVSSGNATERRFSVWIGGSILASL-GSFQQMWFSKSEYEEHGASYIQRKC 444 (445)
Q Consensus 390 ---~~~~v~v~~~~~~~~~~~~~W~Gasilasl-~~f~~~~itr~eY~E~G~~~~~~k~ 444 (445)
+.+++++-. ++.|.+.+++||++||++ ..-.++|+||+||+|.|..++.+..
T Consensus 332 ~~l~KfkiRIEd---PPrRKhMVflGGAVLA~imkD~d~fW~skqeyqE~G~~~l~k~~ 387 (389)
T KOG0677|consen 332 DKLKKFKIRIED---PPRRKHMVFLGGAVLAGIMKDKDEFWMSKQEYQEEGINVLNKLG 387 (389)
T ss_pred hhhhheEEeccC---CCccceeEEEchHHHHHHhcCCccceecHHHHHhhhHHHHHhhc
Confidence 135666666 678899999999999995 6667999999999999999988754
No 10
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=100.00 E-value=1.8e-73 Score=567.77 Aligned_cols=361 Identities=41% Similarity=0.747 Sum_probs=320.1
Q ss_pred CcEEEeCCCceeEeeecCCCCCCcccCcceeeecCCCcccccccccCCCccccCCCccCCcCCCCCcceEeccccccCcC
Q 037470 8 SAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDDSANAERNSGSAIDSKNNVDSNKGKGKRKLYVGTQSLGFRR 87 (445)
Q Consensus 8 ~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 87 (445)
++||||+||++||+||+|++.|++++||++++++... .. ....+.+++|+++.. .+
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~~ps~v~~~~~~~----~~-------------------~~~~~~~~~G~~a~~-~~ 57 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVVFPSIVGRPKDGK----GM-------------------VGDAKDTFVGDEAQE-KR 57 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEEccceeeEecccc----cc-------------------cCCCcceEecchhhh-cC
Confidence 5899999999999999999999999999999876431 00 001246899998743 34
Q ss_pred CCeEEeccCCCCeecCHHHHHHHHHHHhccccCCCCCCCcEEEecCCCCCHHHHHHHhc---cccCccCCeeeccceE-E
Q 037470 88 DHMEVLSPLKDGVVVDWDIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNTQQQRESSAF---SFWVCVCGILVFCPVI-E 163 (445)
Q Consensus 88 ~~~~~~~P~~~g~i~d~d~~e~i~~~~~~~~L~~~~~~~~vll~ep~~~~~~~r~~~~e---E~~~~~~~~~~~~p~v-~ 163 (445)
+..++++|+++|.|.|||.++.+|+|+|++.|++++.++||+|++|.+++...|+++++ |.|+ +|++ +
T Consensus 58 ~~~~~~~P~~~G~i~d~~~~e~i~~~~~~~~l~~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~--------~~~v~~ 129 (373)
T smart00268 58 GGLELKYPIEHGIVENWDDMEKIWDYTFFNELRVEPEEHPVLLTEPPMNPKSNREKILEIMFETFN--------FPALYI 129 (373)
T ss_pred CCceecCCCcCCEEeCHHHHHHHHHHHHhhhcCCCCccCeeEEecCCCCCHHHHHHHHHHhhccCC--------CCeEEE
Confidence 55689999999999999999999999998899999999999999999999999999999 9999 9999 9
Q ss_pred echhhhhhhccCCceEEEEEcCCCceEEEEeecceecCccceEecccHHHHHHHHHHHHHhcCCcccCccccccccCCCC
Q 037470 164 FDALVLTSFALGRATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRYSFKRKENRPG 243 (445)
Q Consensus 164 ~~~~~la~~~~g~~tglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~p~~~~~~~~~~~~ 243 (445)
.+++++++|++|.++|+|||||++.|+|+||+||+++.++++++++||++++++|.++|++++..+
T Consensus 130 ~~~~~~a~~~~g~~~~lVVDiG~~~t~v~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~-------------- 195 (373)
T smart00268 130 AIQAVLSLYASGRTTGLVIDSGDGVTHVVPVVDGYVLPHAIKRIDIAGRDLTDYLKELLSERGYQF-------------- 195 (373)
T ss_pred eccHHHHHHhCCCCEEEEEecCCCcceEEEEECCEEchhhheeccCcHHHHHHHHHHHHHhcCCCC--------------
Confidence 999999999999999999999999999999999999999999999999999999999998754221
Q ss_pred CcceeccCCCCCchhHHhHhHHHHHHHHhhcceecCCCcCCcccc------CCCCCceeECCCCceEeeCcccccccccc
Q 037470 244 EFQIVDLDFPNTTESYKLYCQRVIASDIKECVCRAPDTPYDESAY------SNIPMTPYELPDGQVIEIGADRFKTPDVL 317 (445)
Q Consensus 244 ~~~~~~~~~~~~~~s~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~------~~~~~~~~~lpdg~~i~l~~er~~~~E~l 317 (445)
......++++++|+++|+++.+...+... .......|.||||+.+.++.||+.+||+|
T Consensus 196 ----------------~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lpdg~~~~~~~er~~~~E~l 259 (373)
T smart00268 196 ----------------NSSAEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYELPDGNTIKVGNERFRIPEIL 259 (373)
T ss_pred ----------------CcHHHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEECCCCCEEEEChHHeeCchhc
Confidence 11245678999999999998754332211 23345689999999999999999999999
Q ss_pred cCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHhCCHHhHHHHhcCccccCCCCchhhHHHHHHHHHhhhCCCCceEEEE
Q 037470 318 FNPSLVQTIPGMENFAENIPFRGLPQMVIDSINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVV 397 (445)
Q Consensus 318 F~p~~~~~~~~~~~~~~~~~~~~L~~~I~~~i~~~~~d~r~~L~~nIvLtGG~s~i~Gl~~RL~~eL~~~~p~~~~v~v~ 397 (445)
|+|+..+. + ..+|+++|.++|++||+|+|++|++|||||||+|++|||.+||++||+.++|...++++.
T Consensus 260 f~p~~~~~----~-------~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~ 328 (373)
T smart00268 260 FKPELIGL----E-------QKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVI 328 (373)
T ss_pred CCchhcCC----C-------cCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEe
Confidence 99988753 2 679999999999999999999999999999999999999999999999999988889988
Q ss_pred ecCCCCCccceeEeeeEEeecccccccccccHHHHHHcCchhhhhcC
Q 037470 398 SSGNATERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKC 444 (445)
Q Consensus 398 ~~~~~~~~~~~~W~Gasilasl~~f~~~~itr~eY~E~G~~~~~~k~ 444 (445)
. +.++.+++|+|||++|++++|+++||||+||+|+|+++++|||
T Consensus 329 ~---~~~~~~~~W~G~silas~~~f~~~~vtk~eY~E~G~~i~~~k~ 372 (373)
T smart00268 329 A---PPERKYSVWLGGSILASLSTFEDMWITKKEYEEHGSQIVERKC 372 (373)
T ss_pred c---CCCCccceEeCcccccCccchhhhEEEHHHHhhhCcceEEeec
Confidence 7 5678999999999999999999999999999999999999998
No 11
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=100.00 E-value=1.3e-71 Score=553.86 Aligned_cols=361 Identities=44% Similarity=0.793 Sum_probs=319.5
Q ss_pred cEEEeCCCceeEeeecCCCCCCcccCcceeeecCCCcccccccccCCCccccCCCccCCcCCCCCcceEeccccccCcCC
Q 037470 9 AIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDDSANAERNSGSAIDSKNNVDSNKGKGKRKLYVGTQSLGFRRD 88 (445)
Q Consensus 9 ~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 88 (445)
+||||+||+++|+||+|++.|++++||++++++.... .. +.+.+.+++|+++......
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~~ps~v~~~~~~~~--~~--------------------~~~~~~~~~G~~a~~~~~~ 58 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVVFPSCVGRPKHQSV--MV--------------------GAGDKDYFVGEEALEKRGL 58 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceEeeccceeecCccc--cc--------------------ccCCCceEEchhhhhCCCC
Confidence 6999999999999999999999999999998764310 00 1123578999987654433
Q ss_pred CeEEeccCCCCeecCHHHHHHHHHHHhccccCCCCCCCcEEEecCCCCCHHHHHHHhc---cccCccCCeeeccceE-Ee
Q 037470 89 HMEVLSPLKDGVVVDWDIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNTQQQRESSAF---SFWVCVCGILVFCPVI-EF 164 (445)
Q Consensus 89 ~~~~~~P~~~g~i~d~d~~e~i~~~~~~~~L~~~~~~~~vll~ep~~~~~~~r~~~~e---E~~~~~~~~~~~~p~v-~~ 164 (445)
++++++|+++|.|.|||.++.+|+|+|++.|..++.++||+|++|+++++..|+++++ |.|+ +|++ +.
T Consensus 59 ~~~~~~P~~~G~i~d~~~~e~~~~~~~~~~l~~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~--------~~~v~~~ 130 (371)
T cd00012 59 GLELIYPIEHGIVVDWDDMEKIWDHLFFNELKVNPEEHPVLLTEPPLNPKSNREKTTEIMFETFN--------VPALYVA 130 (371)
T ss_pred ceEEcccccCCEEeCHHHHHHHHHHHHHHhcCCCCCCCceEEecCCCCCHHHHHHHHHHhhccCC--------CCEEEEe
Confidence 6899999999999999999999999998888899999999999999999999999999 9999 9999 99
Q ss_pred chhhhhhhccCCceEEEEEcCCCceEEEEeecceecCccceEecccHHHHHHHHHHHHHhcCCcccCccccccccCCCCC
Q 037470 165 DALVLTSFALGRATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRYSFKRKENRPGE 244 (445)
Q Consensus 165 ~~~~la~~~~g~~tglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~p~~~~~~~~~~~~~ 244 (445)
++++|++|++|.++|||||||++.|+|+||+||+++.++++++++||++++++|.++|++++..+.
T Consensus 131 ~~~~~a~~~~g~~~~lVVDiG~~~t~i~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~-------------- 196 (371)
T cd00012 131 IQAVLSLYASGRTTGLVVDSGDGVTHVVPVYDGYVLPHAIKRLDLAGRDLTRYLKELLRERGYELN-------------- 196 (371)
T ss_pred chHHHHHHhcCCCeEEEEECCCCeeEEEEEECCEEchhhheeccccHHHHHHHHHHHHHhcCCCcc--------------
Confidence 999999999999999999999999999999999999999999999999999999999988764221
Q ss_pred cceeccCCCCCchhHHhHhHHHHHHHHhhcceecCCCcCCcc----ccCCCCCceeECCCCceEeeCcccccccccccCC
Q 037470 245 FQIVDLDFPNTTESYKLYCQRVIASDIKECVCRAPDTPYDES----AYSNIPMTPYELPDGQVIEIGADRFKTPDVLFNP 320 (445)
Q Consensus 245 ~~~~~~~~~~~~~s~~~~~~~~~~~~iKe~~~~v~~~~~~~~----~~~~~~~~~~~lpdg~~i~l~~er~~~~E~lF~p 320 (445)
.....+.++++|+++|+++.+...+. .........|.|||++.+.++.|||.+||+||+|
T Consensus 197 ----------------~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~~~~er~~~~E~lF~p 260 (371)
T cd00012 197 ----------------SSDEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPDGRTIKVGNERFRAPEILFNP 260 (371)
T ss_pred ----------------chhHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECCCCeEEEEChHHhhChHhcCCh
Confidence 13456789999999999987654332 1233445789999999999999999999999999
Q ss_pred CCCCCCCCCCCccCCCCCCCHHHHHHHHHHhCCHHhHHHHhcCccccCCCCchhhHHHHHHHHHhhhCCC--CceEEEEe
Q 037470 321 SLVQTIPGMENFAENIPFRGLPQMVIDSINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQ--AARVKVVS 398 (445)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~L~~~I~~~i~~~~~d~r~~L~~nIvLtGG~s~i~Gl~~RL~~eL~~~~p~--~~~v~v~~ 398 (445)
+..+. . ..+|+++|.++|+.||++.|+.+++||+||||+|++|||.+||++||..++|. ..++++..
T Consensus 261 ~~~~~----~-------~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~ 329 (371)
T cd00012 261 SLIGS----E-------QVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIA 329 (371)
T ss_pred hhcCC----C-------cCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEcc
Confidence 88753 1 67999999999999999999999999999999999999999999999999987 55566665
Q ss_pred cCCCCCccceeEeeeEEeecccccccccccHHHHHHcCchhhhhc
Q 037470 399 SGNATERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRK 443 (445)
Q Consensus 399 ~~~~~~~~~~~W~Gasilasl~~f~~~~itr~eY~E~G~~~~~~k 443 (445)
..+|.+++|+|||++|++++|+++||||+||+|+|+++++||
T Consensus 330 ---~~~~~~~aw~G~si~as~~~~~~~~itk~eY~E~G~~~~~~k 371 (371)
T cd00012 330 ---PPERKYSVWLGGSILASLSTFQQLWITKEEYEEHGPSIVHRK 371 (371)
T ss_pred ---CCCccccEEeCchhhcCchhhhheEeeHHHHhhhCchhEecC
Confidence 578999999999999999999999999999999999999987
No 12
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=2.8e-69 Score=535.11 Aligned_cols=389 Identities=39% Similarity=0.641 Sum_probs=322.0
Q ss_pred CCCCCCcEEEeCCCceeEeeecCCCCCCcccCcceeeecCCCcccccccccCCCccccCCCccCCcCCCCCcceEecccc
Q 037470 3 GGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDDSANAERNSGSAIDSKNNVDSNKGKGKRKLYVGTQS 82 (445)
Q Consensus 3 ~~~~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 82 (445)
.++..++||||+||+++|+||+|++.|++++|+++++.+.. +..+. +...++.++|+++
T Consensus 2 ~~~~~~~iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~---~~~~~------------------~~~~~~~~v~ne~ 60 (444)
T COG5277 2 TGDNVPTIVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDE---DSVME------------------DTEEKDTYVGNEA 60 (444)
T ss_pred CCCCCCeEEEeCCCceEEeeecCCCCceeeccccccccccc---ccccc------------------cccccccccCchh
Confidence 45556669999999999999999999999999999987511 01000 1123567888887
Q ss_pred ccCcC-CCeEEeccCCCCeecCHHHHHHHHHHHhcc--ccCCCCCCCcEEEecCCCCCHHHHHHHhc---cccCccCCee
Q 037470 83 LGFRR-DHMEVLSPLKDGVVVDWDIVDSIWDHAFRE--CLLIDPKEHPMLLAEPSSNTQQQRESSAF---SFWVCVCGIL 156 (445)
Q Consensus 83 ~~~~~-~~~~~~~P~~~g~i~d~d~~e~i~~~~~~~--~L~~~~~~~~vll~ep~~~~~~~r~~~~e---E~~~~~~~~~ 156 (445)
..... ...++++|+++|.|.||++++.+|+|+|++ .+...+.++|++|+||++++.+.|+++++ |+|+
T Consensus 61 ~~~~~~~~~~~~~p~~~g~i~~W~~~e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~~~e~~fE~~~------ 134 (444)
T COG5277 61 QNDRDNSLLELRYPIENGIILNWDAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITELLFETLN------ 134 (444)
T ss_pred hhccCCccceeecccccCccCCcHHHHHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHHHHHHHHHhcC------
Confidence 54332 378899999999999999999999999988 68889999999999999999999999999 9999
Q ss_pred eccceE-EechhhhhhhccCCc--eEEEEEcCCCceEEEEeecceecCccceEecccHHHHHHHHHHHHHhcCCcccCcc
Q 037470 157 VFCPVI-EFDALVLTSFALGRA--TSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRY 233 (445)
Q Consensus 157 ~~~p~v-~~~~~~la~~~~g~~--tglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~p~~ 233 (445)
+|++ ++.+++|++|+.|.. +|+|||+|++.|+|+||+||.++.++++++++||+++|.+|.++|...+. ..+.+
T Consensus 135 --vp~~~~~~~~~l~~ya~g~~~~~g~ViD~G~~~t~v~PV~DG~~l~~a~~ri~~gG~~it~~l~~lL~~~~~-~~~~~ 211 (444)
T COG5277 135 --VPALYLAIQAVLSLYASGSSDETGLVIDSGDSVTHVIPVVDGIVLPKAVKRIDIGGRDITDYLKKLLREKYP-PSRGY 211 (444)
T ss_pred --CcceEeeHHHHHHHHhcCCCCCceEEEEcCCCceeeEeeeccccccccceeeecCcHHHHHHHHHHHhhccc-ccCCc
Confidence 9999 999999999999999 99999999999999999999999999999999999999999999998654 22222
Q ss_pred ccccccCCCCCcceeccCCCCCchhHHhHhHHHHHHHHhhcce-------ecCCCcCCc---c----------------c
Q 037470 234 SFKRKENRPGEFQIVDLDFPNTTESYKLYCQRVIASDIKECVC-------RAPDTPYDE---S----------------A 287 (445)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~iKe~~~-------~v~~~~~~~---~----------------~ 287 (445)
.++.. .. ....++++.+|+++| |+..+.... . .
T Consensus 212 ~l~~e-------------------~~--~~~~ei~~~ik~e~~~~~~~~~y~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 270 (444)
T COG5277 212 NLKSE-------------------LV--EYSSEIVNEIKEEVCETDDESAYVSLDAEEEFEEEEEKPAEKSTESTFQLSK 270 (444)
T ss_pred ccccc-------------------cc--cccHHHHHHHHHhhccccccccchhhcchHHHHHHhhhhhhhcccccccccc
Confidence 22110 00 134678889999988 554322110 0 0
Q ss_pred cCCCCCceeECCCCceEeeCcc-cccccccccCCC--CCCC-CCCCC---------------CccCCCCCCCHHHHHHHH
Q 037470 288 YSNIPMTPYELPDGQVIEIGAD-RFKTPDVLFNPS--LVQT-IPGME---------------NFAENIPFRGLPQMVIDS 348 (445)
Q Consensus 288 ~~~~~~~~~~lpdg~~i~l~~e-r~~~~E~lF~p~--~~~~-~~~~~---------------~~~~~~~~~~L~~~I~~~ 348 (445)
........+.+||++.+.++.| ||.+||.||+|. ..+. ..|.. .........||++++.++
T Consensus 271 ~~~~~~~~~~~p~~~~i~~~~e~rf~~pE~lF~pe~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~e~v~~s 350 (444)
T COG5277 271 ETSIAKESKELPDGEEIEFGNEERFKAPEILFKPELPISGLEEAGKIDESKQELVAENYEISPTNLGNDIAGLPELVYQS 350 (444)
T ss_pred hhccccccccCCCCceEeechhhhhhcchhhcCCccccccccccccchhhhhhhhhhccccccccccccccchHHHHHHH
Confidence 1223456789999999999999 999999999999 4432 00100 000112356799999999
Q ss_pred HHhCCHHhHHHHhcCccccCCCCchhhHHHHHHHHHhhhCCCCceEEEEecCCCCCccceeEeeeEEeeccccccccccc
Q 037470 349 INKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVVSSGNATERRFSVWIGGSILASLGSFQQMWFS 428 (445)
Q Consensus 349 i~~~~~d~r~~L~~nIvLtGG~s~i~Gl~~RL~~eL~~~~p~~~~v~v~~~~~~~~~~~~~W~Gasilasl~~f~~~~it 428 (445)
|+.||.+.|+.|++|||||||+|++|||.+||++||+.+.|..+++.|.. +.+|.+.+|+|||++|++++|+.+|||
T Consensus 351 i~~~~~~~r~~l~~nivitGGts~~pg~~~Rl~~el~~~~p~~~~v~v~~---~~~~~~~~W~GaSila~~~~~~~~~it 427 (444)
T COG5277 351 IQICDEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIP---PPDPSLDAWLGASILASLETFQQLWIT 427 (444)
T ss_pred HHhccHHHHHHHhhCEEEecCccCCCCHHHHHHHHHHhhcCCCCceeeec---CCchhhccccchhhhccccchhheEee
Confidence 99999999999999999999999999999999999999999989999998 569999999999999999999999999
Q ss_pred HHHHHHcCchhhhhcCC
Q 037470 429 KSEYEEHGASYIQRKCP 445 (445)
Q Consensus 429 r~eY~E~G~~~~~~k~~ 445 (445)
|+||+|+|++++++||.
T Consensus 428 k~eY~e~G~~~~~~~~~ 444 (444)
T COG5277 428 KEEYEEHGPDILQEKRF 444 (444)
T ss_pred HHHhhhhhhHHHhhccC
Confidence 99999999999999874
No 13
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=100.00 E-value=7.9e-66 Score=466.37 Aligned_cols=355 Identities=26% Similarity=0.464 Sum_probs=307.8
Q ss_pred CCCcEEEeCCCceeEeeecCCCCCCcccCcceeeecCCCcccccccccCCCccccCCCccCCcCCCCCcceEeccccccC
Q 037470 6 EVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDDSANAERNSGSAIDSKNNVDSNKGKGKRKLYVGTQSLGF 85 (445)
Q Consensus 6 ~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 85 (445)
+..+||||+|++++|+|+++++.|.. +|+|+.+.+. +.++.|+|++....
T Consensus 2 ~~~tiVlDNGay~~KiG~s~~~~p~~-vpNcl~kaK~-----------------------------~~rr~f~~nei~ec 51 (400)
T KOG0680|consen 2 ETTTIVLDNGAYNIKIGPSTNKKPFV-VPNCLAKAKF-----------------------------GRRRSFLANEIDEC 51 (400)
T ss_pred CCceEEEcCCceeEEeccCCCCCcee-ccchhhhccc-----------------------------ccchhhhhhhhhhc
Confidence 46789999999999999999999995 8999887543 34668888875432
Q ss_pred -cCCCeEEeccCCCCeecCHHHHHHHHHHHhcc-ccCCCCCCCcEEEecCCCCCHHHHHHHhc---cccCccCCeeeccc
Q 037470 86 -RRDHMEVLSPLKDGVVVDWDIVDSIWDHAFRE-CLLIDPKEHPMLLAEPSSNTQQQRESSAF---SFWVCVCGILVFCP 160 (445)
Q Consensus 86 -~~~~~~~~~P~~~g~i~d~d~~e~i~~~~~~~-~L~~~~~~~~vll~ep~~~~~~~r~~~~e---E~~~~~~~~~~~~p 160 (445)
....+.+++|+++|.++|||....+|+|+|.+ .++++..++.+++|||.++-++..+...| |+|+ +-
T Consensus 52 ~D~ssL~y~rp~erGyLvnW~tq~~vWDy~f~~~~~~~~~~~~~ivlTep~~~~psi~~~t~eilFEey~--------fd 123 (400)
T KOG0680|consen 52 KDISSLFYRRPHERGYLVNWDTQSQVWDYCFGNPGFDVEGKDHNIVLTEPCMTFPSIQEHTDEILFEEYQ--------FD 123 (400)
T ss_pred cCccceEEeehhhcceeEeehhHHHHHHHHhcCCCcCcccCcceEEEecccccccchhhhHHHHHHHHhc--------cc
Confidence 24457789999999999999999999999953 23466789999999999999999888888 9999 99
Q ss_pred eE-Eechhhhhhhcc---C--------CceEEEEEcCCCceEEEEeecceecCccceEecccHHHHHHHHHHHHHhcCCc
Q 037470 161 VI-EFDALVLTSFAL---G--------RATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKSLESKGIT 228 (445)
Q Consensus 161 ~v-~~~~~~la~~~~---g--------~~tglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~ 228 (445)
++ =...+.++++-. + ...+||||.|++.|+|+||.+|.+..++++++++||+.||++|++.+..++.+
T Consensus 124 ~v~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v~g~~~~qaV~RiDvGGK~LTn~LKE~iSyR~lN 203 (400)
T KOG0680|consen 124 AVLKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVVKGIPYYQAVKRIDVGGKALTNLLKETISYRHLN 203 (400)
T ss_pred eEeecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehhhcCcchhhceEEeecchHHHHHHHHHHhhhhhhc
Confidence 99 888888887761 1 13799999999999999999999999999999999999999999999888765
Q ss_pred ccCccccccccCCCCCcceeccCCCCCchhHHhHhHHHHHHHHhhcceecCCCcCCcc------ccCCCCCceeECCC--
Q 037470 229 IKPRYSFKRKENRPGEFQIVDLDFPNTTESYKLYCQRVIASDIKECVCRAPDTPYDES------AYSNIPMTPYELPD-- 300 (445)
Q Consensus 229 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~iKe~~~~v~~~~~~~~------~~~~~~~~~~~lpd-- 300 (445)
+. ....++.+|||.+|||+++....- ...+.....|.|||
T Consensus 204 vm--------------------------------dET~vVNeiKEdvcfVSqnF~~~m~~~~~k~~~~~~~i~YvLPDF~ 251 (400)
T KOG0680|consen 204 VM--------------------------------DETYVVNEIKEDVCFVSQNFKEDMDIAKTKFQENKVMIDYVLPDFS 251 (400)
T ss_pred cc--------------------------------chhhhhhhhhhheEEechhhHHHHHHHhhccccceeEEEEecCCcc
Confidence 42 344589999999999998643321 11223456677776
Q ss_pred -----------------CceEeeCcccccccccccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHhCCHHhHHHHhcC
Q 037470 301 -----------------GQVIEIGADRFKTPDVLFNPSLVQTIPGMENFAENIPFRGLPQMVIDSINKCDVDIRRELFSS 363 (445)
Q Consensus 301 -----------------g~~i~l~~er~~~~E~lF~p~~~~~~~~~~~~~~~~~~~~L~~~I~~~i~~~~~d~r~~L~~n 363 (445)
.+.|.+++|||.+||+||+|+.++. + ++||+|+|.+||..||.++|+.|+.|
T Consensus 252 T~k~Gyvr~~~vk~~~d~qii~L~nErF~IPEilF~Psdi~I----~-------q~GIpEAV~esl~~~Pe~~~p~l~~N 320 (400)
T KOG0680|consen 252 TSKRGYVRNEDVKLPEDEQIITLTNERFTIPEILFSPSDIGI----Q-------QPGIPEAVLESLSMLPEEVRPLLLEN 320 (400)
T ss_pred cccceeEecCCCCCCCCcceeeecccccccchhhcChhhcCc----c-------cCCchHHHHHHHHhCHHHHHHHHHhc
Confidence 3568889999999999999999964 3 88999999999999999999999999
Q ss_pred ccccCCCCchhhHHHHHHHHHhhhCCCCceEEEEecCCCCCccceeEeeeEEeecccccccccccHHHHHHcCchhhhhc
Q 037470 364 ILLAGGTASMQQLKERLEKDLLEESPQAARVKVVSSGNATERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRK 443 (445)
Q Consensus 364 IvLtGG~s~i~Gl~~RL~~eL~~~~p~~~~v~v~~~~~~~~~~~~~W~Gasilasl~~f~~~~itr~eY~E~G~~~~~~k 443 (445)
||++||++++|||.+||..||+.++|.++.++|.. +.+|..-+|-||+-++.+.+|..+||||+||+|+|++++.+|
T Consensus 321 Iv~iGGn~~fPgF~~RL~~Elr~l~P~d~~v~V~~---p~dp~~~~W~~g~~~~~~~~~~~~~itR~dy~E~G~~~~~~~ 397 (400)
T KOG0680|consen 321 IVCIGGNSNFPGFRQRLARELRSLLPADWEVSVSV---PEDPITFAWEGGSEFAKTDSFEKAVITREDYEEHGPSWCTKK 397 (400)
T ss_pred EEEecCccCCcchHHHHHHHHHhhCCccceEEEec---CCCcceeeehhccccccCcchhcceecHhhHhhcCchhhhhh
Confidence 99999999999999999999999999999999998 688899999999999999999999999999999999999987
Q ss_pred C
Q 037470 444 C 444 (445)
Q Consensus 444 ~ 444 (445)
+
T Consensus 398 ~ 398 (400)
T KOG0680|consen 398 R 398 (400)
T ss_pred c
Confidence 5
No 14
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=100.00 E-value=9e-57 Score=408.02 Aligned_cols=368 Identities=29% Similarity=0.498 Sum_probs=303.5
Q ss_pred CcEEEeCCCceeEeeecCCCCCCcccCcceeeecCCCcccccccccCCCccccCCCccCCcCCCCCcceEeccccccCcC
Q 037470 8 SAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDDSANAERNSGSAIDSKNNVDSNKGKGKRKLYVGTQSLGFRR 87 (445)
Q Consensus 8 ~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 87 (445)
.++|+|+|+.++|.||+|...|.+++|++++...... .++..+.....+..+-++++|++|+. .
T Consensus 5 ~p~V~d~Gtgytklg~agn~~p~~i~p~~ia~~~~~~--------------~s~~~~~~~~~~~~dldf~ig~eal~--~ 68 (415)
T KOG0678|consen 5 LPCVIDNGTGYTKLGYAGNTEPQFIIPTAIAVKESAA--------------VSSKATRRVKRGTEDLDFFIGDEALD--A 68 (415)
T ss_pred CceeeccCcceeeeeccccCCcccccceeEEeccccc--------------cccchhhhhhccccccceecccHHHh--h
Confidence 3599999999999999999999999999998753210 11111112222344568999999886 4
Q ss_pred CCeEEeccCCCCeecCHHHHHHHHHHHhccccCCCCCCCcEEEecCCCCCHHHHHHHhc---cccCccCCeeeccceE-E
Q 037470 88 DHMEVLSPLKDGVVVDWDIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNTQQQRESSAF---SFWVCVCGILVFCPVI-E 163 (445)
Q Consensus 88 ~~~~~~~P~~~g~i~d~d~~e~i~~~~~~~~L~~~~~~~~vll~ep~~~~~~~r~~~~e---E~~~~~~~~~~~~p~v-~ 163 (445)
..+.+.+|+++|.+.|||.||.+|...+.++|..+|++|-.||+||++++++.|+.+.| |.|+ +|.+ +
T Consensus 69 ~~ysl~ypiRhg~ve~wd~mer~~~q~ifkylr~ePedh~fLlteppln~penreytaeImfEsfn--------vpglyi 140 (415)
T KOG0678|consen 69 TTYSLKYPIRHGQVEDWDLMERFWEQCIFKYLRAEPEDHYFLLTEPPLNQPENREYTAEIMFESFN--------VPGLYI 140 (415)
T ss_pred cccccccceeccccccHHHHHHHHhhhhhhhhcCCcccceEEecCCCCCCchhhHHHHHhhhhhcc--------CchHHH
Confidence 57889999999999999999999999999999999999999999999999999999999 9999 9999 9
Q ss_pred echhhhhhhccC--------CceEEEEEcCCCceEEEEeecceecCccceEecccHHHHHHHHHHHHHhcCCcccCcccc
Q 037470 164 FDALVLTSFALG--------RATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRYSF 235 (445)
Q Consensus 164 ~~~~~la~~~~g--------~~tglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~p~~~~ 235 (445)
+.++++|+-++- .-||+|||.|.+.|+|+||.|||++-++++.+|+.|+++|-+++++|++++..+.|.
T Consensus 141 AVqavLALaaswts~~v~er~ltG~VidsGdgvThvipvaEgyVigScik~iPiagrdiT~fiQ~llRer~~~iP~e--- 217 (415)
T KOG0678|consen 141 AVQAVLALAASWTSRQVGERFLTGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGIPPE--- 217 (415)
T ss_pred HHHHHHHHHHHHHHhhhhhheeeeEEEecCCCeeEEEEeecceEEeeeeccccccCCchhHHHHHHhhCCCCCCChH---
Confidence 999999986642 359999999999999999999999999999999999999999999999888655432
Q ss_pred ccccCCCCCcceeccCCCCCchhHHhHhHHHHHHHHhhcceecCCCcCCccccCCCCC----cee---ECC--CCceEee
Q 037470 236 KRKENRPGEFQIVDLDFPNTTESYKLYCQRVIASDIKECVCRAPDTPYDESAYSNIPM----TPY---ELP--DGQVIEI 306 (445)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~----~~~---~lp--dg~~i~l 306 (445)
.+.+.++.+||++||+.++...+-....... +.| ..- ....+++
T Consensus 218 ---------------------------~sl~tak~iKe~ycy~cPdivkef~k~d~ep~K~ikq~~~~~~i~~~~~~vDv 270 (415)
T KOG0678|consen 218 ---------------------------QSLETAKAIKEKYCYTCPDIVKEFAKYDREPAKWIKQYTGINVITGKKFVVDV 270 (415)
T ss_pred ---------------------------HhhhhhHHHHhhhcccCcHHHHHHHHhccCHHHHHHHHhccchhcCCceeecc
Confidence 3456789999999999876443321100000 000 000 1235778
Q ss_pred CcccccccccccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHhCCHHhHHHHhcCccccCCCCchhhHHHHHHHHHhh
Q 037470 307 GADRFKTPDVLFNPSLVQTIPGMENFAENIPFRGLPQMVIDSINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLE 386 (445)
Q Consensus 307 ~~er~~~~E~lF~p~~~~~~~~~~~~~~~~~~~~L~~~I~~~i~~~~~d~r~~L~~nIvLtGG~s~i~Gl~~RL~~eL~~ 386 (445)
+.|||..||++|+|...... ....|++.+...|+.||+|.|+.||+||++.||.+++++|..|++++++.
T Consensus 271 gyerFlgpEiff~Pe~a~~d----------~~~~~~~~vd~~Iq~~pIdvrr~ly~nivlsggst~fk~fgr~lqrD~kr 340 (415)
T KOG0678|consen 271 GYERFLGPEIFFHPEFANPD----------FLTPLSEVVDWVIQHCPIDVRRPLYKNIVLSGGSTMFKDFGRRLQRDLKR 340 (415)
T ss_pred cHHhhcChhhhcCccccCCc----------cCcchHHHhhhhhhhCCcccchhhhhHHhhccchHHHHHhhhhccHHHHH
Confidence 99999999999999887531 14579999999999999999999999999999999999999999999987
Q ss_pred hCC--------------CCceEEEEecCCCCCccceeEeeeEEeecccccccccccHHHHHHcCchhhhh
Q 037470 387 ESP--------------QAARVKVVSSGNATERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQR 442 (445)
Q Consensus 387 ~~p--------------~~~~v~v~~~~~~~~~~~~~W~Gasilasl~~f~~~~itr~eY~E~G~~~~~~ 442 (445)
+.. ....++++. ..-.++++|.|||+|+|.+.|-..+-||++|||+|++|++.
T Consensus 341 ~vd~rl~~s~~lsg~k~~~vdvqvis---h~~qr~avwfggs~lastpef~~~~~tk~~yee~g~si~r~ 407 (415)
T KOG0678|consen 341 LVDTRLAESEGLSGIKSKPVDVQVLS---HLLQRTAVWFGGSKLASTPEFVPACHTKEDYEEYGPSICRT 407 (415)
T ss_pred HHHHHHHHhcccccCCCCCceeehhh---hhhhhcceeccCccccCCcccccccCcchhhhhhChhhhhc
Confidence 641 223566666 45678999999999999999999999999999999999864
No 15
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=100.00 E-value=1.2e-54 Score=417.43 Aligned_cols=388 Identities=26% Similarity=0.449 Sum_probs=289.3
Q ss_pred CCcEEEeCCCceeEeeecCCCCCCcccCcceeeecCCCcccccccccCCCccccCCCccCCcCCCCCcceEeccccccCc
Q 037470 7 VSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDDSANAERNSGSAIDSKNNVDSNKGKGKRKLYVGTQSLGFR 86 (445)
Q Consensus 7 ~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 86 (445)
..|||||+||+.+||||+|+..|+++|++++.++++.. .+..-.++|++.....
T Consensus 23 ~~piVIDNGS~~~RaGw~ge~eP~lvFrNvl~r~Rdrk--------------------------~~~s~t~vgnd~~~~~ 76 (645)
T KOG0681|consen 23 TIPIVIDNGSYECRAGWAGEKEPRLVFRNVLTRPRDRK--------------------------LGASVTLVGNDILNFQ 76 (645)
T ss_pred CCcEEEeCCceeEeecccCCCCccchhhhhhccccccc--------------------------cccccccccchhhhhh
Confidence 45899999999999999999999999999999988542 1112235666532211
Q ss_pred CCCeEEeccCCCCeecCHHHHHHHHHHHhccccCCCC--CCCcEEEecCCCCCHHHHHHHhc---cccCccCCeeeccce
Q 037470 87 RDHMEVLSPLKDGVVVDWDIVDSIWDHAFRECLLIDP--KEHPMLLAEPSSNTQQQRESSAF---SFWVCVCGILVFCPV 161 (445)
Q Consensus 87 ~~~~~~~~P~~~g~i~d~d~~e~i~~~~~~~~L~~~~--~~~~vll~ep~~~~~~~r~~~~e---E~~~~~~~~~~~~p~ 161 (445)
.-....++||++.+|+||+.+|.|++|+| .+|+++. -+||++|||+.++|...|+.|.| |.|| +|+
T Consensus 77 ~~Rs~~rSPFd~nVvtNwel~E~ilDY~F-~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~Yg--------vP~ 147 (645)
T KOG0681|consen 77 GVRSSPRSPFDRNVVTNWELMEQILDYIF-GKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYG--------VPK 147 (645)
T ss_pred hhhccCCCCCcCCccccHHHHHHHHHHHH-HhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcC--------Ccc
Confidence 11234789999999999999999999999 8999998 48999999999999999999999 9999 999
Q ss_pred E-Eechhhhhhh-ccCC---ceEEEEEcCCCceEEEEeecceecCccceEecccHHHHHHHHHHHHHhcCCcccCccccc
Q 037470 162 I-EFDALVLTSF-ALGR---ATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRYSFK 236 (445)
Q Consensus 162 v-~~~~~~la~~-~~g~---~tglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~p~~~~~ 236 (445)
| +.-.++-|.| .++. .+|+||++|++.|+|+||.||..+...++++++||.+...||.+||+.++.-.......+
T Consensus 148 V~yGIDslfS~~hN~~~~~~~~~liis~g~~~T~vipvldG~~il~~~kRiN~GG~qa~dYL~~Lmq~Kyp~~~~~~t~s 227 (645)
T KOG0681|consen 148 VAYGIDSLFSFYHNYGKSSNKSGLIISMGHSATHVIPVLDGRLILKDVKRINWGGYQAGDYLSRLMQLKYPFHLNAFTGS 227 (645)
T ss_pred eeechhhHHHHhhccCcccCcceEEEecCCCcceeEEEecCchhhhcceeeccCcchHHHHHHHHHhccCccchhhcCHH
Confidence 9 9999999999 3333 369999999999999999999999999999999999999999999998764322222222
Q ss_pred cccCCCCCcceeccCC----------------------CCC---ch-hH------H-h--HhHHH---HHHHHhhc----
Q 037470 237 RKENRPGEFQIVDLDF----------------------PNT---TE-SY------K-L--YCQRV---IASDIKEC---- 274 (445)
Q Consensus 237 ~~~~~~~~~~~~~~~~----------------------~~~---~~-s~------~-~--~~~~~---~~~~iKe~---- 274 (445)
+.+....+++++.-++ |-+ .. .. + . ..... -++++.++
T Consensus 228 k~E~l~~eHcyis~DY~eei~~~l~~d~~d~~~~~~qlP~~evl~~~e~~l~Ae~kqekRlq~~a~lkrv~k~~~re~~r 307 (645)
T KOG0681|consen 228 KAERLLHEHCYISPDYREEIIKILEMDYYDENRNYFQLPYTEVLAEVELALTAEKKQEKRLQEQAALKRVEKINARENRR 307 (645)
T ss_pred HHHHHhhhhceeCcchHHHHHHHhhhhhhhccceEEecccccccchhhhhccHHHHHHHHHHHHHHHhhHHHHHHHHhhh
Confidence 2222222222221111 000 00 00 0 0 00000 00000000
Q ss_pred ---------------------------ceecCCCcCCcc---------------------------cc---------CC-
Q 037470 275 ---------------------------VCRAPDTPYDES---------------------------AY---------SN- 290 (445)
Q Consensus 275 ---------------------------~~~v~~~~~~~~---------------------------~~---------~~- 290 (445)
+..|. ..++++ +. .+
T Consensus 308 edeqql~~~~kaq~e~e~~~D~~q~~~ll~v~-~eL~~d~lk~k~~qr~lkas~dar~rar~eke~Er~~k~~~~r~~~~ 386 (645)
T KOG0681|consen 308 EDEQQLESYNKAQGEQESNLDLEQKFPLLNVP-AELDEDQLKEKKKQRILKASTDARLRARVEKELERLNKLEEEREENL 386 (645)
T ss_pred hhHHHHHHHHHhhhchhcCccHhhhchhhcch-hhhCHHHHHHHHHHHHHHhhhhhhccccccchHHHhhcccccccccH
Confidence 00000 000000 00 00
Q ss_pred ----------------------------------------------------------CCCceeE---------------
Q 037470 291 ----------------------------------------------------------IPMTPYE--------------- 297 (445)
Q Consensus 291 ----------------------------------------------------------~~~~~~~--------------- 297 (445)
...-.|.
T Consensus 387 ~swl~e~r~k~~~ller~~~kk~lk~e~~~r~s~~Sq~rmr~~~~La~~~~~rrk~~~~t~D~fg~~Dedw~vYe~lee~ 466 (645)
T KOG0681|consen 387 ISWLEELREKLEKLLERISQKKRLKQELKDRKSHASQLRMRALARLAYEQVVRRKRKEATPDNFGARDEDWDVYEDLEEE 466 (645)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhhHHHHhhhHHHHHHHhcccCCccccccchhhHHHHHHhhhh
Confidence 0000000
Q ss_pred ------------------------------------CC----CCceEeeCcccccccccccCCCCCCCCCCCCCccCCCC
Q 037470 298 ------------------------------------LP----DGQVIEIGADRFKTPDVLFNPSLVQTIPGMENFAENIP 337 (445)
Q Consensus 298 ------------------------------------lp----dg~~i~l~~er~~~~E~lF~p~~~~~~~~~~~~~~~~~ 337 (445)
+| ....+.++.||+++||++|+|+++|. +
T Consensus 467 ~~~~~~dl~~l~~~L~e~Dp~F~~~~~~~~d~~~~~~p~~~~e~~qlh~nVEriRvPEIiFqPsiiG~----d------- 535 (645)
T KOG0681|consen 467 NKSILEDLKSLNHELLEFDPHFTQYVEGTTDPRNGVLPGFTAEDYQLHLNVERIRVPEIIFQPSIIGI----D------- 535 (645)
T ss_pred hhhHHHHHHHHHHHHHhhCcccccccccccCcccCcchhHHHhhhhhhhcceeeccceeeeccccccc----h-------
Confidence 00 01235688999999999999999964 4
Q ss_pred CCCHHHHHHHHHHhCCHHhHHHHhcCccccCCCCchhhHHHHHHHHHhhhCCCCceEEEEecCCCCCccceeEeeeEEee
Q 037470 338 FRGLPQMVIDSINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVVSSGNATERRFSVWIGGSILA 417 (445)
Q Consensus 338 ~~~L~~~I~~~i~~~~~d~r~~L~~nIvLtGG~s~i~Gl~~RL~~eL~~~~p~~~~v~v~~~~~~~~~~~~~W~Gasila 417 (445)
+.||.+++..++.+.|.+.+..|.+||+||||+|++||+++||.+||..+.|-..++.|+. ..+|...||.||+.+|
T Consensus 536 QaGl~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~r---asdP~LDAW~GA~~~a 612 (645)
T KOG0681|consen 536 QAGLAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVR---ASDPVLDAWRGASAWA 612 (645)
T ss_pred hhhHHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEe---cCCcchhhhhhhHHhh
Confidence 8999999999999999999999999999999999999999999999999999888999998 6889999999999999
Q ss_pred cccccccccccHHHHHHcCchhhhhcC
Q 037470 418 SLGSFQQMWFSKSEYEEHGASYIQRKC 444 (445)
Q Consensus 418 sl~~f~~~~itr~eY~E~G~~~~~~k~ 444 (445)
...+|...|+||+||+|+|+..++..|
T Consensus 613 ~n~~f~~~~~Tr~dy~E~G~e~~kEh~ 639 (645)
T KOG0681|consen 613 ANPTFTLTQITRKDYEEKGEEYLKEHV 639 (645)
T ss_pred cCcccchhhhhHHhhhhhhHHHHHHHh
Confidence 999999999999999999999988654
No 16
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=100.00 E-value=1e-40 Score=319.14 Aligned_cols=321 Identities=26% Similarity=0.396 Sum_probs=256.7
Q ss_pred CCeEEeccCCCCeecC----------HHHHHHHHHHHhccccCCCCC---CCcEEEecCCCCCHHHHHHHhc---cccCc
Q 037470 88 DHMEVLSPLKDGVVVD----------WDIVDSIWDHAFRECLLIDPK---EHPMLLAEPSSNTQQQRESSAF---SFWVC 151 (445)
Q Consensus 88 ~~~~~~~P~~~g~i~d----------~d~~e~i~~~~~~~~L~~~~~---~~~vll~ep~~~~~~~r~~~~e---E~~~~ 151 (445)
..+.+.+|+++|...- ..++.+||+|++.+.|++.++ ++.++++.|...-+.+.++++. -+++
T Consensus 177 ~~y~l~~Pir~G~fNv~~~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~- 255 (618)
T KOG0797|consen 177 SPYCLYHPIRRGHFNVSPPYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELG- 255 (618)
T ss_pred CcceeecccccceeccCCcchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhc-
Confidence 3678999999997642 367889999999999999874 6889999998888888777777 8889
Q ss_pred cCCeeeccceE-EechhhhhhhccCCceEEEEEcCCCceEEEEeecceecCccceEecccHHHHHHHHHHHHHhcCCccc
Q 037470 152 VCGILVFCPVI-EFDALVLTSFALGRATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKSLESKGITIK 230 (445)
Q Consensus 152 ~~~~~~~~p~v-~~~~~~la~~~~g~~tglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~ 230 (445)
+.++ +++++++++||+|.+++||||||+..|+|+||-||..++++..++++||.+|++.|..+|++.+++..
T Consensus 256 -------F~~~~v~QESlaatfGaGlss~CVVdiGAQkTsIaCVEdGvs~~ntri~L~YGGdDitr~f~~ll~rs~FPy~ 328 (618)
T KOG0797|consen 256 -------FNSAVVHQESLAATFGAGLSSACVVDIGAQKTSIACVEDGVSLPNTRIILPYGGDDITRCFLWLLRRSGFPYQ 328 (618)
T ss_pred -------cceEEEEhhhhHHHhcCCccceeEEEccCcceeEEEeecCccccCceEEeccCCchHHHHHHHHHHhcCCCcc
Confidence 9999 99999999999999999999999999999999999999999999999999999999999999886532
Q ss_pred CccccccccCCCCCcceeccCCCCCchhHHhHhHHHHHHHHhhcceecCCCcCCccccCCCCCceeECCCC----ceEee
Q 037470 231 PRYSFKRKENRPGEFQIVDLDFPNTTESYKLYCQRVIASDIKECVCRAPDTPYDESAYSNIPMTPYELPDG----QVIEI 306 (445)
Q Consensus 231 p~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~lpdg----~~i~l 306 (445)
. .++ ....++.+++++||+.|.......... .....+.-|++ .++.+
T Consensus 329 d------------------~~v-------~~~~d~lLl~~LKe~Fc~l~~a~~~vQ----~~~F~~R~pn~~~~kytfk~ 379 (618)
T KOG0797|consen 329 D------------------CDV-------LAPIDWLLLNQLKEKFCHLRAAELGVQ----LTVFSYREPNPPTLKYTFKL 379 (618)
T ss_pred c------------------ccc-------cccccHHHHHHHHHHhccccHhhhhhh----hhhhhccCCCCcceeeeeec
Confidence 1 111 113577899999999998765433221 11222333443 35667
Q ss_pred CcccccccccccCCCCCCCCC------------CCC-----------------------------C--c-----------
Q 037470 307 GADRFKTPDVLFNPSLVQTIP------------GME-----------------------------N--F----------- 332 (445)
Q Consensus 307 ~~er~~~~E~lF~p~~~~~~~------------~~~-----------------------------~--~----------- 332 (445)
++|...+|-.||.|.+++... ..+ + +
T Consensus 380 ~DE~mlAPlaLF~P~lf~~~~tk~~~~q~~~q~d~~d~fd~e~~~~~~~~~~~~~~g~~~l~ls~~i~~~~~~~~~l~~~ 459 (618)
T KOG0797|consen 380 GDEVMLAPLALFYPNLFVIEGTKSHKNQSFPQPDREDLFDYEYLLEDTWKQDFGGGGNDGLQLSDSIGFSNRIRDQLPEK 459 (618)
T ss_pred cchhhccchhhhhhhhhhccccccccccccCCCCcccccchhhhhhhccccccccccccccccccccccccccccccccc
Confidence 889999999999998764310 000 0 0
Q ss_pred c---C-------------------------------CCCCC----CHHHHHHHHHHhC-CHHhHHHHhcCccccCCCCch
Q 037470 333 A---E-------------------------------NIPFR----GLPQMVIDSINKC-DVDIRRELFSSILLAGGTASM 373 (445)
Q Consensus 333 ~---~-------------------------------~~~~~----~L~~~I~~~i~~~-~~d~r~~L~~nIvLtGG~s~i 373 (445)
. + ..+.. .|.+.|..+|..+ ..|.++.|++.|.++||..++
T Consensus 460 ~d~~Elg~t~~d~f~p~~~s~~gslaa~~i~n~~~~~~~f~gl~l~ldqsii~sid~~~sdd~~rKl~sSil~Vgga~~~ 539 (618)
T KOG0797|consen 460 PDKEELGVTLKDNFAPLEKSIVGSLAAASIMNKKGLYESFYGLLLALDQSIISSIDSALSDDTKRKLFSSILLVGGAGLF 539 (618)
T ss_pred ccchhhccccccccCCchhhhhhhhhhhhhhcccceeccccchhhccchhHHHhhhhhccchhhHhhhhHHHhhcccccc
Confidence 0 0 01122 3445577777776 678899999999999999999
Q ss_pred hhHHHHHHHHHhhhCCC----CceEEEEecCCCCCccceeEeeeEEeecccccccccccHHHHHHcCchhhhhcCC
Q 037470 374 QQLKERLEKDLLEESPQ----AARVKVVSSGNATERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKCP 445 (445)
Q Consensus 374 ~Gl~~RL~~eL~~~~p~----~~~v~v~~~~~~~~~~~~~W~Gasilasl~~f~~~~itr~eY~E~G~~~~~~k~~ 445 (445)
|||.+-|++.+....|+ ...|.|+.+++..+|++-+|.||+|||.+..-.++||++.||.-+|.++++.||+
T Consensus 540 ~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~~~~ELwI~~~dW~~~G~RvL~~k~~ 615 (618)
T KOG0797|consen 540 PGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILDFVRELWIENSDWQVHGVRVLQYKKY 615 (618)
T ss_pred hhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHHHHHHHheechhHhhhhhhhhhhccc
Confidence 99999999999987775 2368899887778999999999999999999999999999999999999999985
No 17
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=2.3e-38 Score=311.01 Aligned_cols=304 Identities=21% Similarity=0.273 Sum_probs=239.5
Q ss_pred EEEeCCCceeEeeecCCCCCCcccCcceeeecCCCcccccccccCCCccccCCCccCCcCCCCCcceEeccccccC---c
Q 037470 10 IVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDDSANAERNSGSAIDSKNNVDSNKGKGKRKLYVGTQSLGF---R 86 (445)
Q Consensus 10 vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~---~ 86 (445)
|+||+||+++|+|++++. +.+.+||+|+..... .+.+++|++|... .
T Consensus 11 vgiDlGt~~t~i~~~~~~-~~~~~ps~v~~~~~~-----------------------------~~~~~vG~~A~~~~~~~ 60 (335)
T PRK13930 11 IGIDLGTANTLVYVKGKG-IVLNEPSVVAIDTKT-----------------------------GKVLAVGEEAKEMLGRT 60 (335)
T ss_pred eEEEcCCCcEEEEECCCC-EEEecCCEEEEECCC-----------------------------CeEEEEcHHHHHhhhcC
Confidence 999999999999999776 566789999876421 1367999988643 2
Q ss_pred CCCeEEeccCCCCeecCHHHHHHHHHHHhccccCCCC-CCCcEEEecCCCCCHHHHHHHhc--cccCccCCeeeccceE-
Q 037470 87 RDHMEVLSPLKDGVVVDWDIVDSIWDHAFRECLLIDP-KEHPMLLAEPSSNTQQQRESSAF--SFWVCVCGILVFCPVI- 162 (445)
Q Consensus 87 ~~~~~~~~P~~~g~i~d~d~~e~i~~~~~~~~L~~~~-~~~~vll~ep~~~~~~~r~~~~e--E~~~~~~~~~~~~p~v- 162 (445)
+.++++.+|+++|.|.||+.++.+|+|++++.+...+ ...+++++.|..++...|+.+.+ |.+| ++.+
T Consensus 61 ~~~~~~~~pi~~G~i~d~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~~e~~g--------~~~~~ 132 (335)
T PRK13930 61 PGNIEAIRPLKDGVIADFEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAAEHAG--------AREVY 132 (335)
T ss_pred CCCeEEeecCCCCeEcCHHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHHHHHcC--------CCeEE
Confidence 4678899999999999999999999999955444333 36789999999999999998888 9999 9999
Q ss_pred EechhhhhhhccCC-----ceEEEEEcCCCceEEEEeecceecCccceEecccHHHHHHHHHHHHHhcCCcccCcccccc
Q 037470 163 EFDALVLTSFALGR-----ATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRYSFKR 237 (445)
Q Consensus 163 ~~~~~~la~~~~g~-----~tglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~p~~~~~~ 237 (445)
++++|++|+|++|. ++++|||+|+++|+|+||.+|.++.. ...++||+++|+.|.+++.++. .+
T Consensus 133 lv~ep~AAa~a~g~~~~~~~~~lVvDiG~gttdvs~v~~g~~~~~--~~~~lGG~~id~~l~~~l~~~~-~~-------- 201 (335)
T PRK13930 133 LIEEPMAAAIGAGLPVTEPVGNMVVDIGGGTTEVAVISLGGIVYS--ESIRVAGDEMDEAIVQYVRRKY-NL-------- 201 (335)
T ss_pred ecccHHHHHHhcCCCcCCCCceEEEEeCCCeEEEEEEEeCCEEee--cCcCchhHHHHHHHHHHHHHHh-CC--------
Confidence 99999999999987 57899999999999999999998864 6789999999999999987642 10
Q ss_pred ccCCCCCcceeccCCCCCchhHHhHhHHHHHHHHhhcceecCCCcCCccccCCCCCceeECCCCceEeeCcccccccccc
Q 037470 238 KENRPGEFQIVDLDFPNTTESYKLYCQRVIASDIKECVCRAPDTPYDESAYSNIPMTPYELPDGQVIEIGADRFKTPDVL 317 (445)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~lpdg~~i~l~~er~~~~E~l 317 (445)
....+.++++|+++|++..+...+..........+.+|+ .+.++.+++. |++
T Consensus 202 ------------------------~~~~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~--e~i 253 (335)
T PRK13930 202 ------------------------LIGERTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLPK--TIEISSEEVR--EAL 253 (335)
T ss_pred ------------------------CCCHHHHHHHHHHhhcCcCCCCCceEEEECccCCCCCCe--eEEECHHHHH--HHH
Confidence 012357899999999887642211111111112234444 5667777663 888
Q ss_pred cCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHhCCHHhHHHHhcC-ccccCCCCchhhHHHHHHHHHhhhCCCCceEEE
Q 037470 318 FNPSLVQTIPGMENFAENIPFRGLPQMVIDSINKCDVDIRRELFSS-ILLAGGTASMQQLKERLEKDLLEESPQAARVKV 396 (445)
Q Consensus 318 F~p~~~~~~~~~~~~~~~~~~~~L~~~I~~~i~~~~~d~r~~L~~n-IvLtGG~s~i~Gl~~RL~~eL~~~~p~~~~v~v 396 (445)
|.| ..++.+.|.++|++++.+.+.+++.| |+|+||+|++|||.+||++++.. ++.
T Consensus 254 ~~~-----------------~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~------~v~- 309 (335)
T PRK13930 254 AEP-----------------LQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGL------PVH- 309 (335)
T ss_pred HHH-----------------HHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCC------Cce-
Confidence 875 34799999999999999999999987 99999999999999999999851 223
Q ss_pred EecCCCCCccceeEeeeEEeec
Q 037470 397 VSSGNATERRFSVWIGGSILAS 418 (445)
Q Consensus 397 ~~~~~~~~~~~~~W~Gasilas 418 (445)
. ..+|..+.=+||++++.
T Consensus 310 -~---~~~p~~ava~Ga~~~~~ 327 (335)
T PRK13930 310 -I---AEDPLTCVARGTGKALE 327 (335)
T ss_pred -e---cCCHHHHHHHHHHHHHh
Confidence 2 24566777788887764
No 18
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=2.6e-37 Score=303.20 Aligned_cols=303 Identities=20% Similarity=0.263 Sum_probs=233.9
Q ss_pred cEEEeCCCceeEeeecCCCCCCcccCcceeeecCCCcccccccccCCCccccCCCccCCcCCCCCcceEeccccccC---
Q 037470 9 AIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDDSANAERNSGSAIDSKNNVDSNKGKGKRKLYVGTQSLGF--- 85 (445)
Q Consensus 9 ~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~--- 85 (445)
.|+||+||+++|+|++|++. .+.+||+++.++.. .+.+++|++|...
T Consensus 7 ~igIDlGt~~~~i~~~~~~~-~~~~ps~v~~~~~~-----------------------------~~~~~vG~~a~~~~~~ 56 (334)
T PRK13927 7 DLGIDLGTANTLVYVKGKGI-VLNEPSVVAIRTDT-----------------------------KKVLAVGEEAKQMLGR 56 (334)
T ss_pred eeEEEcCcceEEEEECCCcE-EEecCCEEEEECCC-----------------------------CeEEEecHHHHHHhhc
Confidence 59999999999999999887 56799999987531 1357999998643
Q ss_pred cCCCeEEeccCCCCeecCHHHHHHHHHHHhccccCCCCCCC-cEEEecCCCCCHHHHHHHhc--cccCccCCeeeccceE
Q 037470 86 RRDHMEVLSPLKDGVVVDWDIVDSIWDHAFRECLLIDPKEH-PMLLAEPSSNTQQQRESSAF--SFWVCVCGILVFCPVI 162 (445)
Q Consensus 86 ~~~~~~~~~P~~~g~i~d~d~~e~i~~~~~~~~L~~~~~~~-~vll~ep~~~~~~~r~~~~e--E~~~~~~~~~~~~p~v 162 (445)
.+.++++.+|+++|.|.|||.++.+|+|++++.+.. +.++ .++++.|...+...|+.+.+ +.++ ++.+
T Consensus 57 ~~~~~~~~~pi~~G~i~d~~~~~~ll~~~~~~~~~~-~~~~~~~vi~vP~~~~~~~r~~~~~a~~~ag--------~~~~ 127 (334)
T PRK13927 57 TPGNIVAIRPMKDGVIADFDVTEKMLKYFIKKVHKN-FRPSPRVVICVPSGITEVERRAVRESALGAG--------AREV 127 (334)
T ss_pred CCCCEEEEecCCCCeecCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEeCCCCCHHHHHHHHHHHHHcC--------CCee
Confidence 256788999999999999999999999999777766 5556 58888887776666655555 9999 9999
Q ss_pred -EechhhhhhhccCC-----ceEEEEEcCCCceEEEEe-ecceecCccceEecccHHHHHHHHHHHHHhcCCcccCcccc
Q 037470 163 -EFDALVLTSFALGR-----ATSLVVDCGGGSTTVAPV-HDGYVLQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRYSF 235 (445)
Q Consensus 163 -~~~~~~la~~~~g~-----~tglVVDiG~~~t~v~pV-~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~p~~~~ 235 (445)
++++|++|+|++|. ++++|||+|+++|+++|+ ++|.+..+. .++||+++|+.|.++|.++. .+
T Consensus 128 ~li~ep~aaa~~~g~~~~~~~~~lvvDiGggttdvs~v~~~~~~~~~~---~~lGG~~id~~l~~~l~~~~-~~------ 197 (334)
T PRK13927 128 YLIEEPMAAAIGAGLPVTEPTGSMVVDIGGGTTEVAVISLGGIVYSKS---VRVGGDKFDEAIINYVRRNY-NL------ 197 (334)
T ss_pred ccCCChHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEecCCeEeeCC---cCChHHHHHHHHHHHHHHHh-Cc------
Confidence 99999999999987 467999999999999999 677776643 57999999999999986532 00
Q ss_pred ccccCCCCCcceeccCCCCCchhHHhHhHHHHHHHHhhcceecCCCcCCccccCCCCCceeECCCCceEeeCcccccccc
Q 037470 236 KRKENRPGEFQIVDLDFPNTTESYKLYCQRVIASDIKECVCRAPDTPYDESAYSNIPMTPYELPDGQVIEIGADRFKTPD 315 (445)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~lpdg~~i~l~~er~~~~E 315 (445)
....+.++++|+++|++..+..............+.+|+ .+.++.++|. |
T Consensus 198 --------------------------~~~~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~--e 247 (334)
T PRK13927 198 --------------------------LIGERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPK--TITISSNEIR--E 247 (334)
T ss_pred --------------------------CcCHHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCCe--EEEECHHHHH--H
Confidence 013356899999999876422111110111111233443 5677777774 7
Q ss_pred cccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHhCCHHhHHHHhc-CccccCCCCchhhHHHHHHHHHhhhCCCCceE
Q 037470 316 VLFNPSLVQTIPGMENFAENIPFRGLPQMVIDSINKCDVDIRRELFS-SILLAGGTASMQQLKERLEKDLLEESPQAARV 394 (445)
Q Consensus 316 ~lF~p~~~~~~~~~~~~~~~~~~~~L~~~I~~~i~~~~~d~r~~L~~-nIvLtGG~s~i~Gl~~RL~~eL~~~~p~~~~v 394 (445)
++|.| ..++.+.|.++|++++.+.+.++++ +|+||||+|++|||.+||++++. .++
T Consensus 248 ~i~~~-----------------~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~------~~v 304 (334)
T PRK13927 248 ALQEP-----------------LSAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETG------LPV 304 (334)
T ss_pred HHHHH-----------------HHHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHC------CCc
Confidence 88876 3479999999999999999999997 59999999999999999999984 223
Q ss_pred EEEecCCCCCccceeEeeeEEeec
Q 037470 395 KVVSSGNATERRFSVWIGGSILAS 418 (445)
Q Consensus 395 ~v~~~~~~~~~~~~~W~Gasilas 418 (445)
. . ..+|..++=.||++++.
T Consensus 305 ~--~---~~~P~~ava~Ga~~~~~ 323 (334)
T PRK13927 305 H--V---AEDPLTCVARGTGKALE 323 (334)
T ss_pred E--e---cCCHHHHHHHHHHHHHh
Confidence 3 2 34567788888887764
No 19
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=2.8e-35 Score=288.35 Aligned_cols=307 Identities=21% Similarity=0.253 Sum_probs=234.8
Q ss_pred EEEeCCCceeEeeecCCCCCCcccCcceeeecCCCcccccccccCCCccccCCCccCCcCCCCCcceEeccccccC---c
Q 037470 10 IVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDDSANAERNSGSAIDSKNNVDSNKGKGKRKLYVGTQSLGF---R 86 (445)
Q Consensus 10 vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~---~ 86 (445)
|-||+||.++++-. ....-.+..||+++...... | ...+.+++|++|... .
T Consensus 5 ~giDlGt~~s~i~~-~~~~~~~~~psvv~~~~~~~-----~--------------------~~~~~~~vG~~A~~~~~~~ 58 (333)
T TIGR00904 5 IGIDLGTANTLVYV-KGRGIVLNEPSVVAIRTDRD-----A--------------------KTKSILAVGHEAKEMLGKT 58 (333)
T ss_pred eEEecCcceEEEEE-CCCCEEEecCCEEEEecCCC-----C--------------------CCCeEEEEhHHHHHhhhcC
Confidence 88999999999944 33333456799998764210 0 012458899998653 2
Q ss_pred CCCeEEeccCCCCeecCHHHHHHHHHHHhccccCCCCCCC-cEEEecCCCCCHHHHHHHhc--cccCccCCeeeccceE-
Q 037470 87 RDHMEVLSPLKDGVVVDWDIVDSIWDHAFRECLLIDPKEH-PMLLAEPSSNTQQQRESSAF--SFWVCVCGILVFCPVI- 162 (445)
Q Consensus 87 ~~~~~~~~P~~~g~i~d~d~~e~i~~~~~~~~L~~~~~~~-~vll~ep~~~~~~~r~~~~e--E~~~~~~~~~~~~p~v- 162 (445)
++++++.+|+++|.|.||+.++.+|+|++++.+......+ ++++++|..++..+|+.+.+ |.++ ++.+
T Consensus 59 ~~~~~~~~pi~~G~i~d~~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~~~~~~ag--------~~~~~ 130 (333)
T TIGR00904 59 PGNIVAIRPMKDGVIADFEVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAVKESALSAG--------AREVY 130 (333)
T ss_pred CCCEEEEecCCCCEEEcHHHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHHHHHHHHHcC--------CCeEE
Confidence 5788999999999999999999999999977665432223 69999999999999999777 9999 9999
Q ss_pred EechhhhhhhccCC-----ceEEEEEcCCCceEEEEe-ecceecCccceEecccHHHHHHHHHHHHHhcCCcccCccccc
Q 037470 163 EFDALVLTSFALGR-----ATSLVVDCGGGSTTVAPV-HDGYVLQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRYSFK 236 (445)
Q Consensus 163 ~~~~~~la~~~~g~-----~tglVVDiG~~~t~v~pV-~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~p~~~~~ 236 (445)
++++|++|+|++|. .+++|||+|+++|+|++| ++|.+... ..++||+++|+.|.+++.++. ..
T Consensus 131 li~ep~aaa~~~g~~~~~~~~~lVvDiG~gttdvs~v~~~~~~~~~---~~~lGG~did~~l~~~l~~~~-~~------- 199 (333)
T TIGR00904 131 LIEEPMAAAIGAGLPVEEPTGSMVVDIGGGTTEVAVISLGGIVVSR---SIRVGGDEFDEAIINYIRRTY-NL------- 199 (333)
T ss_pred EecCHHHHHHhcCCcccCCceEEEEEcCCCeEEEEEEEeCCEEecC---CccchHHHHHHHHHHHHHHHh-cc-------
Confidence 99999999999997 689999999999999999 77777664 358999999999999886532 10
Q ss_pred cccCCCCCcceeccCCCCCchhHHhHhHHHHHHHHhhcceecCCCcCCcc-ccCCCCCceeECCCCceEeeCcccccccc
Q 037470 237 RKENRPGEFQIVDLDFPNTTESYKLYCQRVIASDIKECVCRAPDTPYDES-AYSNIPMTPYELPDGQVIEIGADRFKTPD 315 (445)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~iKe~~~~v~~~~~~~~-~~~~~~~~~~~lpdg~~i~l~~er~~~~E 315 (445)
....+.++++|+++|++..+...+. .........+.+|++. .++.+ .+.|
T Consensus 200 -------------------------~~~~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~--~~~e 250 (333)
T TIGR00904 200 -------------------------LIGEQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPRTI--EITSV--EVRE 250 (333)
T ss_pred -------------------------cCCHHHHHHHHHHHhccccccccccceeecCccccCCCCeEE--EECHH--HHHH
Confidence 1234579999999998765421111 1111112345677654 44444 5778
Q ss_pred cccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHhCCHHhHHHHhc-CccccCCCCchhhHHHHHHHHHhhhCCCCceE
Q 037470 316 VLFNPSLVQTIPGMENFAENIPFRGLPQMVIDSINKCDVDIRRELFS-SILLAGGTASMQQLKERLEKDLLEESPQAARV 394 (445)
Q Consensus 316 ~lF~p~~~~~~~~~~~~~~~~~~~~L~~~I~~~i~~~~~d~r~~L~~-nIvLtGG~s~i~Gl~~RL~~eL~~~~p~~~~v 394 (445)
++|.| ..++.+.|.+++++++.+.+.++++ +|+||||+|++|||.+||++++..
T Consensus 251 ~i~~~-----------------~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~-------- 305 (333)
T TIGR00904 251 ALQEP-----------------VNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGL-------- 305 (333)
T ss_pred HHHHH-----------------HHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHCC--------
Confidence 89887 3479999999999999999999996 899999999999999999999942
Q ss_pred EEEecCCCCCccceeEeeeEEeec
Q 037470 395 KVVSSGNATERRFSVWIGGSILAS 418 (445)
Q Consensus 395 ~v~~~~~~~~~~~~~W~Gasilas 418 (445)
.+.. ..+|..++=.||++++.
T Consensus 306 ~v~~---~~~P~~~va~Ga~~~~~ 326 (333)
T TIGR00904 306 PVIV---ADDPLLCVAKGTGKALE 326 (333)
T ss_pred Ccee---cCChHHHHHHHHHHHHh
Confidence 2233 35677888889888754
No 20
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=9.7e-34 Score=276.95 Aligned_cols=300 Identities=21% Similarity=0.308 Sum_probs=230.0
Q ss_pred cEEEeCCCceeEeeecCCCCCCcccCcceeeecCCCcccccccccCCCccccCCCccCCcCCCCCcceEeccccccC---
Q 037470 9 AIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDDSANAERNSGSAIDSKNNVDSNKGKGKRKLYVGTQSLGF--- 85 (445)
Q Consensus 9 ~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~--- 85 (445)
.|-||+||.++++ |.....=....||+++...+. .+.+++|++|...
T Consensus 6 ~~giDlGt~~~~i-~~~~~~~~~~~ps~va~~~~~-----------------------------~~~~~vG~~A~~~~~~ 55 (335)
T PRK13929 6 EIGIDLGTANILV-YSKNKGIILNEPSVVAVDTET-----------------------------KAVLAIGTEAKNMIGK 55 (335)
T ss_pred eEEEEcccccEEE-EECCCcEEecCCcEEEEECCC-----------------------------CeEEEeCHHHHHhhhc
Confidence 4899999999998 543332123479998875321 1357899998642
Q ss_pred cCCCeEEeccCCCCeecCHHHHHHHHHHHhc---cccCCCCCCCcEEEecCCCCCHHHHHHHhc--cccCccCCeeeccc
Q 037470 86 RRDHMEVLSPLKDGVVVDWDIVDSIWDHAFR---ECLLIDPKEHPMLLAEPSSNTQQQRESSAF--SFWVCVCGILVFCP 160 (445)
Q Consensus 86 ~~~~~~~~~P~~~g~i~d~d~~e~i~~~~~~---~~L~~~~~~~~vll~ep~~~~~~~r~~~~e--E~~~~~~~~~~~~p 160 (445)
.++++.+.+|+++|.|.|||.++.+|+|+++ +.++..+..+++++++|+..+..+|+.+.+ +.+| ++
T Consensus 56 ~p~~~~~~~pi~~G~I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~a~~~ag--------~~ 127 (335)
T PRK13929 56 TPGKIVAVRPMKDGVIADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVKNCG--------AK 127 (335)
T ss_pred CCCcEEEEecCCCCccCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHHHHHHcC--------CC
Confidence 3567889999999999999999999999996 356776766899999999999999999999 9999 99
Q ss_pred eE-EechhhhhhhccC-----CceEEEEEcCCCceEEEEe-ecceecCccceEecccHHHHHHHHHHHHHhcCCcccCcc
Q 037470 161 VI-EFDALVLTSFALG-----RATSLVVDCGGGSTTVAPV-HDGYVLQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRY 233 (445)
Q Consensus 161 ~v-~~~~~~la~~~~g-----~~tglVVDiG~~~t~v~pV-~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~p~~ 233 (445)
.+ +++++++|++++| ..+++|||+|+++|+++++ ++|.+.. ...++||+++|++|.++|.+.. .+
T Consensus 128 ~~~li~ep~Aaa~~~g~~~~~~~~~lvvDiG~gtt~v~vi~~~~~~~~---~~~~~GG~~id~~l~~~l~~~~-~~---- 199 (335)
T PRK13929 128 NVHLIEEPVAAAIGADLPVDEPVANVVVDIGGGTTEVAIISFGGVVSC---HSIRIGGDQLDEDIVSFVRKKY-NL---- 199 (335)
T ss_pred eeEeecCHHHHHHhcCCCcCCCceEEEEEeCCCeEEEEEEEeCCEEEe---cCcCCHHHHHHHHHHHHHHHHh-Cc----
Confidence 99 9999999999997 4689999999999999999 5555543 3468999999999999987532 11
Q ss_pred ccccccCCCCCcceeccCCCCCchhHHhHhHHHHHHHHhhcceecCCCcCCccccCCCCCceeECCCCceEeeCccccc-
Q 037470 234 SFKRKENRPGEFQIVDLDFPNTTESYKLYCQRVIASDIKECVCRAPDTPYDESAYSNIPMTPYELPDGQVIEIGADRFK- 312 (445)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~lpdg~~i~l~~er~~- 312 (445)
......++++|+++|++..+..++..........+.+| ..+.++.++|.
T Consensus 200 ----------------------------~~~~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p--~~i~i~~~~~~~ 249 (335)
T PRK13929 200 ----------------------------LIGERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLP--KTITLESKEIQG 249 (335)
T ss_pred ----------------------------CcCHHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCC--eEEEEcHHHHHH
Confidence 01235799999999988643221111111111223444 46778877776
Q ss_pred -ccccccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHhCCHHhHHHHhc-CccccCCCCchhhHHHHHHHHHhhhCCC
Q 037470 313 -TPDVLFNPSLVQTIPGMENFAENIPFRGLPQMVIDSINKCDVDIRRELFS-SILLAGGTASMQQLKERLEKDLLEESPQ 390 (445)
Q Consensus 313 -~~E~lF~p~~~~~~~~~~~~~~~~~~~~L~~~I~~~i~~~~~d~r~~L~~-nIvLtGG~s~i~Gl~~RL~~eL~~~~p~ 390 (445)
++|.+| .|.++|.++|++++++.+.++++ +||||||+|++|||.+||++++..
T Consensus 250 ~i~~~l~---------------------~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~---- 304 (335)
T PRK13929 250 AMRESLL---------------------HILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVV---- 304 (335)
T ss_pred HHHHHHH---------------------HHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCC----
Confidence 466665 38899999999999999999997 799999999999999999999952
Q ss_pred CceEEEEecCCCCCccceeEeeeEEe
Q 037470 391 AARVKVVSSGNATERRFSVWIGGSIL 416 (445)
Q Consensus 391 ~~~v~v~~~~~~~~~~~~~W~Gasil 416 (445)
++. . ..+|..++=+|+..+
T Consensus 305 --~v~--~---~~~P~~~Va~Ga~~~ 323 (335)
T PRK13929 305 --PVH--V---AANPLESVAIGTGRS 323 (335)
T ss_pred --Cce--e---CCCHHHHHHHHHHHH
Confidence 222 2 346667777776655
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.97 E-value=1.5e-31 Score=262.26 Aligned_cols=303 Identities=18% Similarity=0.267 Sum_probs=228.0
Q ss_pred EEEeCCCceeEeeecCCCCCCcccCcceeeecCCCcccccccccCCCccccCCCccCCcCCCCCcceEeccccccC---c
Q 037470 10 IVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDDSANAERNSGSAIDSKNNVDSNKGKGKRKLYVGTQSLGF---R 86 (445)
Q Consensus 10 vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~---~ 86 (445)
+-||+||.++++-.. +..-.+..||+++..... .+.+++|++|... .
T Consensus 6 ~gIDlGt~~~~i~~~-~~~~v~~~psvv~~~~~~-----------------------------~~i~~vG~~A~~~~~~~ 55 (336)
T PRK13928 6 IGIDLGTANVLVYVK-GKGIVLNEPSVVAIDKNT-----------------------------NKVLAVGEEARRMVGRT 55 (336)
T ss_pred eEEEcccccEEEEEC-CCCEEEccCCEEEEECCC-----------------------------CeEEEecHHHHHhhhcC
Confidence 899999999999544 433444679998876321 1356899987643 3
Q ss_pred CCCeEEeccCCCCeecCHHHHHHHHHHHhccccCCC-CCCCc-EEEecCCCCCHHHHHHHhc--cccCccCCeeeccceE
Q 037470 87 RDHMEVLSPLKDGVVVDWDIVDSIWDHAFRECLLID-PKEHP-MLLAEPSSNTQQQRESSAF--SFWVCVCGILVFCPVI 162 (445)
Q Consensus 87 ~~~~~~~~P~~~g~i~d~d~~e~i~~~~~~~~L~~~-~~~~~-vll~ep~~~~~~~r~~~~e--E~~~~~~~~~~~~p~v 162 (445)
..++.+.+|+.+|.|.|||.++.+|+|+++ ++... +.++| ++++.|...+...|+.+.+ +.+| ++.+
T Consensus 56 p~~~~~~~pi~~G~i~d~~~~~~~l~~~~~-~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~~~ag--------~~~~ 126 (336)
T PRK13928 56 PGNIVAIRPLRDGVIADYDVTEKMLKYFIN-KACGKRFFSKPRIMICIPTGITSVEKRAVREAAEQAG--------AKKV 126 (336)
T ss_pred CCCEEEEccCCCCeEecHHHHHHHHHHHHH-HHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcC--------CCce
Confidence 467888999999999999999999999994 44333 45677 9999998888877777777 9999 9999
Q ss_pred -EechhhhhhhccCC-----ceEEEEEcCCCceEEEEeecceecCccceEecccHHHHHHHHHHHHHhcCCcccCccccc
Q 037470 163 -EFDALVLTSFALGR-----ATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRYSFK 236 (445)
Q Consensus 163 -~~~~~~la~~~~g~-----~tglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~p~~~~~ 236 (445)
++++|++|++++|. .+++|||+|+++|+|++|..|.++.. ...++||+++|+.|.+.+.++. .+
T Consensus 127 ~li~ep~Aaa~~~g~~~~~~~~~lVvDiGggttdvsvv~~g~~~~~--~~~~lGG~did~~i~~~l~~~~-~~------- 196 (336)
T PRK13928 127 YLIEEPLAAAIGAGLDISQPSGNMVVDIGGGTTDIAVLSLGGIVTS--SSIKVAGDKFDEAIIRYIRKKY-KL------- 196 (336)
T ss_pred EecccHHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEEeCCEEEe--CCcCCHHHHHHHHHHHHHHHHh-ch-------
Confidence 99999999999987 67999999999999999999987765 4689999999999999987432 10
Q ss_pred cccCCCCCcceeccCCCCCchhHHhHhHHHHHHHHhhcceecCCCcCCccccCCCCCceeECCCCceEeeCccccccccc
Q 037470 237 RKENRPGEFQIVDLDFPNTTESYKLYCQRVIASDIKECVCRAPDTPYDESAYSNIPMTPYELPDGQVIEIGADRFKTPDV 316 (445)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~lpdg~~i~l~~er~~~~E~ 316 (445)
......++++|+.++.+.................+.+|+ .+.++.++|. |+
T Consensus 197 -------------------------~~~~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~--~~~i~~~~~~--ei 247 (336)
T PRK13928 197 -------------------------LIGERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPK--TITVTSEEIR--EA 247 (336)
T ss_pred -------------------------hcCHHHHHHHHHHhcccccccCCcEEEEecccccCCCce--EEEECHHHHH--HH
Confidence 122356899999998775431111110001111122333 3566666554 66
Q ss_pred ccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHhCCHHhHHHHhc-CccccCCCCchhhHHHHHHHHHhhhCCCCceEE
Q 037470 317 LFNPSLVQTIPGMENFAENIPFRGLPQMVIDSINKCDVDIRRELFS-SILLAGGTASMQQLKERLEKDLLEESPQAARVK 395 (445)
Q Consensus 317 lF~p~~~~~~~~~~~~~~~~~~~~L~~~I~~~i~~~~~d~r~~L~~-nIvLtGG~s~i~Gl~~RL~~eL~~~~p~~~~v~ 395 (445)
++.+ ...+.+.|.+++.+++.+++.+++. +|+||||+|++||+.++|++++.. +++
T Consensus 248 i~~~-----------------~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~------~v~ 304 (336)
T PRK13928 248 LKEP-----------------VSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKV------PVY 304 (336)
T ss_pred HHHH-----------------HHHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCC------Cce
Confidence 6543 3468999999999999999989997 899999999999999999999952 223
Q ss_pred EEecCCCCCccceeEeeeEEeec
Q 037470 396 VVSSGNATERRFSVWIGGSILAS 418 (445)
Q Consensus 396 v~~~~~~~~~~~~~W~Gasilas 418 (445)
. ..+|..++-+||++++.
T Consensus 305 --~---~~~P~~ava~Gaa~~~~ 322 (336)
T PRK13928 305 --I---AEDPISCVALGTGKMLE 322 (336)
T ss_pred --e---cCCHHHHHHHHHHHHHh
Confidence 2 34677899999888864
No 22
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.97 E-value=2.5e-31 Score=254.50 Aligned_cols=301 Identities=22% Similarity=0.294 Sum_probs=216.7
Q ss_pred cEEEeCCCceeEeeecCCCCCCcccCcceeeecCCCcccccccccCCCccccCCCccCCcCCCCCcceEecccccc---C
Q 037470 9 AIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDDSANAERNSGSAIDSKNNVDSNKGKGKRKLYVGTQSLG---F 85 (445)
Q Consensus 9 ~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~---~ 85 (445)
-|-||+||.+|++ |..+..=.+..||+++..... .+.+.+|++|.. .
T Consensus 3 ~igIDLGT~~t~i-~~~~~Giv~~epSvVA~~~~~-----------------------------~~i~avG~~A~~m~gk 52 (326)
T PF06723_consen 3 DIGIDLGTSNTRI-YVKGKGIVLNEPSVVAYDKDT-----------------------------GKILAVGDEAKAMLGK 52 (326)
T ss_dssp EEEEEE-SSEEEE-EETTTEEEEEEES-EEEETTT-------------------------------EEEESHHHHTTTTS
T ss_pred ceEEecCcccEEE-EECCCCEEEecCcEEEEECCC-----------------------------CeEEEEhHHHHHHhhc
Confidence 4789999999999 655554456689999987532 246789998853 3
Q ss_pred cCCCeEEeccCCCCeecCHHHHHHHHHHHhccccCCC-CCCCcEEEecCCCCCHHHHHHHhc--cccCccCCeeeccceE
Q 037470 86 RRDHMEVLSPLKDGVVVDWDIVDSIWDHAFRECLLID-PKEHPMLLAEPSSNTQQQRESSAF--SFWVCVCGILVFCPVI 162 (445)
Q Consensus 86 ~~~~~~~~~P~~~g~i~d~d~~e~i~~~~~~~~L~~~-~~~~~vll~ep~~~~~~~r~~~~e--E~~~~~~~~~~~~p~v 162 (445)
.+.++++.+|+++|+|.|++..+.+++|++++.++-. .....++++.|...+..+|+.+.+ ...| +..+
T Consensus 53 tp~~i~~~~Pl~~GvI~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~~aG--------a~~V 124 (326)
T PF06723_consen 53 TPDNIEVVRPLKDGVIADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAARQAG--------ARKV 124 (326)
T ss_dssp -GTTEEEE-SEETTEESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHTT---------SEE
T ss_pred CCCccEEEccccCCcccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcC--------CCEE
Confidence 4678999999999999999999999999997766642 345569999999999999999999 8899 9999
Q ss_pred -EechhhhhhhccCC-----ceEEEEEcCCCceEEEEeecceecCccceEecccHHHHHHHHHHHHHhcCCcccCccccc
Q 037470 163 -EFDALVLTSFALGR-----ATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRYSFK 236 (445)
Q Consensus 163 -~~~~~~la~~~~g~-----~tglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~p~~~~~ 236 (445)
++++|+++++|+|. ...+|||||+++|.|+.+..|.++.+ +.+++||+++++.+.+++++++- +
T Consensus 125 ~li~ep~AaAiGaGl~i~~~~g~miVDIG~GtTdiavislggiv~s--~si~~gG~~~DeaI~~~ir~~y~-l------- 194 (326)
T PF06723_consen 125 YLIEEPIAAAIGAGLDIFEPRGSMIVDIGGGTTDIAVISLGGIVAS--RSIRIGGDDIDEAIIRYIREKYN-L------- 194 (326)
T ss_dssp EEEEHHHHHHHHTT--TTSSS-EEEEEE-SS-EEEEEEETTEEEEE--EEES-SHHHHHHHHHHHHHHHHS-E-------
T ss_pred EEecchHHHHhcCCCCCCCCCceEEEEECCCeEEEEEEECCCEEEE--EEEEecCcchhHHHHHHHHHhhC-c-------
Confidence 99999999999985 46799999999999999999999886 78999999999999999987651 1
Q ss_pred cccCCCCCcceeccCCCCCchhHHhHhHHHHHHHHhhcceecCCCcCCccccCCCCCceeECCCCc--eEeeC-cccccc
Q 037470 237 RKENRPGEFQIVDLDFPNTTESYKLYCQRVIASDIKECVCRAPDTPYDESAYSNIPMTPYELPDGQ--VIEIG-ADRFKT 313 (445)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~lpdg~--~i~l~-~er~~~ 313 (445)
......++++|++++++.....+.... -.-..+-+|. .+.+. .+-..+
T Consensus 195 -------------------------~Ig~~tAE~iK~~~g~~~~~~~~~~~~----v~Grd~~tGlP~~~~i~~~ev~~a 245 (326)
T PF06723_consen 195 -------------------------LIGERTAEKIKIEIGSASPPEEEESME----VRGRDLITGLPKSIEITSSEVREA 245 (326)
T ss_dssp -------------------------E--HHHHHHHHHHH-BSS--HHHHEEE----EEEEETTTTCEEEEEEEHHHHHHH
T ss_pred -------------------------ccCHHHHHHHHHhcceeeccCCCceEE----EECccccCCCcEEEEEcHHHHHHH
Confidence 356788999999999876532211100 0111122332 34443 343444
Q ss_pred cccccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHhCCHHhHHHHh-cCccccCCCCchhhHHHHHHHHHhhhCCCCc
Q 037470 314 PDVLFNPSLVQTIPGMENFAENIPFRGLPQMVIDSINKCDVDIRRELF-SSILLAGGTASMQQLKERLEKDLLEESPQAA 392 (445)
Q Consensus 314 ~E~lF~p~~~~~~~~~~~~~~~~~~~~L~~~I~~~i~~~~~d~r~~L~-~nIvLtGG~s~i~Gl~~RL~~eL~~~~p~~~ 392 (445)
.+..+ ..|.+.|.+++.++|+++..+++ ++|+||||+|+++||.++|++++. +
T Consensus 246 i~~~~--------------------~~I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~~------~ 299 (326)
T PF06723_consen 246 IEPPV--------------------DQIVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEETG------V 299 (326)
T ss_dssp HHHHH--------------------HHHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHS------S
T ss_pred HHHHH--------------------HHHHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHHC------C
Confidence 44333 36999999999999999999988 569999999999999999999993 3
Q ss_pred eEEEEecCCCCCccceeEeeeEEee
Q 037470 393 RVKVVSSGNATERRFSVWIGGSILA 417 (445)
Q Consensus 393 ~v~v~~~~~~~~~~~~~W~Gasila 417 (445)
++. . ..+|.+++-.|+..+.
T Consensus 300 pV~--v---a~~P~~~va~G~~~~l 319 (326)
T PF06723_consen 300 PVR--V---ADDPLTAVARGAGKLL 319 (326)
T ss_dssp -EE--E----SSTTTHHHHHHHHTT
T ss_pred CEE--E---cCCHHHHHHHHHHHHH
Confidence 344 4 3567788877765543
No 23
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.92 E-value=1.7e-24 Score=199.70 Aligned_cols=308 Identities=22% Similarity=0.270 Sum_probs=232.7
Q ss_pred CcEEEeCCCceeEeeecCCCCCCcccCcceeeecCCCcccccccccCCCccccCCCccCCcCCCCCcceEeccccc---c
Q 037470 8 SAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDDSANAERNSGSAIDSKNNVDSNKGKGKRKLYVGTQSL---G 84 (445)
Q Consensus 8 ~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~---~ 84 (445)
+.|-||+|+.+|++ |.-...-....||+|+..... .....+.+|++|. .
T Consensus 7 ~diGIDLGTanTlV-~~k~kgIVl~ePSVVAi~~~~---------------------------~~~~v~aVG~eAK~MlG 58 (342)
T COG1077 7 NDIGIDLGTANTLV-YVKGKGIVLNEPSVVAIESEG---------------------------KTKVVLAVGEEAKQMLG 58 (342)
T ss_pred ccceeeecccceEE-EEcCceEEecCceEEEEeecC---------------------------CCceEEEehHHHHHHhc
Confidence 36899999999999 555555556689999876521 0224678999984 3
Q ss_pred CcCCCeEEeccCCCCeecCHHHHHHHHHHHhccccCCC--CCCCcEEEecCCCCCHHHHHHHhc--cccCccCCeeeccc
Q 037470 85 FRRDHMEVLSPLKDGVVVDWDIVDSIWDHAFRECLLID--PKEHPMLLAEPSSNTQQQRESSAF--SFWVCVCGILVFCP 160 (445)
Q Consensus 85 ~~~~~~~~~~P~~~g~i~d~d~~e~i~~~~~~~~L~~~--~~~~~vll~ep~~~~~~~r~~~~e--E~~~~~~~~~~~~p 160 (445)
....++...+|+++|+|.|++..+.+++|+.++..+-. +..-.++++.|.-.+...|+.+.| +.-+ ..
T Consensus 59 rTP~ni~aiRPmkdGVIAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~~~aG--------a~ 130 (342)
T COG1077 59 RTPGNIVAIRPMKDGVIADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAAESAG--------AR 130 (342)
T ss_pred cCCCCceEEeecCCcEeecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHHHhcc--------Cc
Confidence 55778999999999999999999999999986544322 234459999999999999999999 8889 88
Q ss_pred eE-EechhhhhhhccCC-----ceEEEEEcCCCceEEEEeecceecCccceEecccHHHHHHHHHHHHHhcCCcccCccc
Q 037470 161 VI-EFDALVLTSFALGR-----ATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRYS 234 (445)
Q Consensus 161 ~v-~~~~~~la~~~~g~-----~tglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~p~~~ 234 (445)
.+ +.++|++|++++|. +.++|||||.++|.|..+..|-++.. ....+||+.+++.+.+++++++--
T Consensus 131 ~V~lieEp~aAAIGaglpi~ep~G~mvvDIGgGTTevaVISlggiv~~--~Sirv~GD~~De~Ii~yvr~~~nl------ 202 (342)
T COG1077 131 EVYLIEEPMAAAIGAGLPIMEPTGSMVVDIGGGTTEVAVISLGGIVSS--SSVRVGGDKMDEAIIVYVRKKYNL------ 202 (342)
T ss_pred eEEEeccHHHHHhcCCCcccCCCCCEEEEeCCCceeEEEEEecCEEEE--eeEEEecchhhHHHHHHHHHHhCe------
Confidence 99 99999999999986 45899999999999999997777775 668899999999999999875421
Q ss_pred cccccCCCCCcceeccCCCCCchhHHhHhHHHHHHHHhhcceecCCCcCCcccc--CCCCCceeECCCCceEeeCccccc
Q 037470 235 FKRKENRPGEFQIVDLDFPNTTESYKLYCQRVIASDIKECVCRAPDTPYDESAY--SNIPMTPYELPDGQVIEIGADRFK 312 (445)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~--~~~~~~~~~lpdg~~i~l~~er~~ 312 (445)
......+++||.+.+++......+... ....+....+|. ++.+..+.
T Consensus 203 ---------------------------~IGe~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk--~i~i~s~e-- 251 (342)
T COG1077 203 ---------------------------LIGERTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPK--TITINSEE-- 251 (342)
T ss_pred ---------------------------eecHHHHHHHHHHhcccccccCCccceeeEEeeecccCCCe--eEEEcHHH--
Confidence 345567999999999987643332211 111122223443 44444332
Q ss_pred ccccccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHhCCHHhHHHHhcC-ccccCCCCchhhHHHHHHHHHhhhCCCC
Q 037470 313 TPDVLFNPSLVQTIPGMENFAENIPFRGLPQMVIDSINKCDVDIRRELFSS-ILLAGGTASMQQLKERLEKDLLEESPQA 391 (445)
Q Consensus 313 ~~E~lF~p~~~~~~~~~~~~~~~~~~~~L~~~I~~~i~~~~~d~r~~L~~n-IvLtGG~s~i~Gl~~RL~~eL~~~~p~~ 391 (445)
+.|.|=.| ...|.+.|...+.++|+++-.+.+.+ |+||||+|++.||++.|.+|..
T Consensus 252 v~eal~~~-----------------v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et~------ 308 (342)
T COG1077 252 IAEALEEP-----------------LNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEETG------ 308 (342)
T ss_pred HHHHHHHH-----------------HHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhccC------
Confidence 22222211 34799999999999999999999977 9999999999999999999873
Q ss_pred ceEEEEecCCCCCccceeEeeeEEeec
Q 037470 392 ARVKVVSSGNATERRFSVWIGGSILAS 418 (445)
Q Consensus 392 ~~v~v~~~~~~~~~~~~~W~Gasilas 418 (445)
+.|+- ..+|-.++-+|+.....
T Consensus 309 --~pv~i---a~~pL~~Va~G~G~~le 330 (342)
T COG1077 309 --VPVII---ADDPLTCVAKGTGKALE 330 (342)
T ss_pred --CeEEE---CCChHHHHHhccchhhh
Confidence 34444 35666777777665544
No 24
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.76 E-value=4.1e-18 Score=158.31 Aligned_cols=205 Identities=20% Similarity=0.249 Sum_probs=154.7
Q ss_pred eccCCCCeecCHHHHHHHHHHHhc---cccCCCCCCCcEEEecCCCCCHHHHHHHhc--cccCccCCeeeccceE-Eech
Q 037470 93 LSPLKDGVVVDWDIVDSIWDHAFR---ECLLIDPKEHPMLLAEPSSNTQQQRESSAF--SFWVCVCGILVFCPVI-EFDA 166 (445)
Q Consensus 93 ~~P~~~g~i~d~d~~e~i~~~~~~---~~L~~~~~~~~vll~ep~~~~~~~r~~~~e--E~~~~~~~~~~~~p~v-~~~~ 166 (445)
..|+.+|.|.|++..+.+++++.+ ..++ ..-..++++.|...+..+|+.+.+ +..| +..+ +..+
T Consensus 28 ~~~~~~g~I~d~~~~~~~l~~l~~~a~~~~g--~~~~~vvisVP~~~~~~~r~a~~~a~~~aG--------l~~~~li~e 97 (239)
T TIGR02529 28 ADVVRDGIVVDFLGAVEIVRRLKDTLEQKLG--IELTHAATAIPPGTIEGDPKVIVNVIESAG--------IEVLHVLDE 97 (239)
T ss_pred cccccCCeEEEhHHHHHHHHHHHHHHHHHhC--CCcCcEEEEECCCCCcccHHHHHHHHHHcC--------CceEEEeeh
Confidence 358999999999999999999984 2332 233579999999999999988888 8889 8899 9999
Q ss_pred hhhhhhccCCceEEEEEcCCCceEEEEeecceecCccceEecccHHHHHHHHHHHHHhcCCcccCccccccccCCCCCcc
Q 037470 167 LVLTSFALGRATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRYSFKRKENRPGEFQ 246 (445)
Q Consensus 167 ~~la~~~~g~~tglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~p~~~~~~~~~~~~~~~ 246 (445)
+++++.+++....+|||+|++.|+++-+.+|.++.. +..++||+++|+.+.+.+.
T Consensus 98 p~Aaa~~~~~~~~~vvDiGggtt~i~i~~~G~i~~~--~~~~~GG~~it~~Ia~~~~----------------------- 152 (239)
T TIGR02529 98 PTAAAAVLQIKNGAVVDVGGGTTGISILKKGKVIYS--ADEPTGGTHMSLVLAGAYG----------------------- 152 (239)
T ss_pred HHHHHHHhcCCCcEEEEeCCCcEEEEEEECCeEEEE--EeeecchHHHHHHHHHHhC-----------------------
Confidence 999999888777899999999999999999988874 6789999999998876652
Q ss_pred eeccCCCCCchhHHhHhHHHHHHHHhhcceecCCCcCCccccCCCCCceeECCCCceEeeCcccccccccccCCCCCCCC
Q 037470 247 IVDLDFPNTTESYKLYCQRVIASDIKECVCRAPDTPYDESAYSNIPMTPYELPDGQVIEIGADRFKTPDVLFNPSLVQTI 326 (445)
Q Consensus 247 ~~~~~~~~~~~s~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~lpdg~~i~l~~er~~~~E~lF~p~~~~~~ 326 (445)
...+.++++|..... . .+.+.. ..|.
T Consensus 153 ----------------i~~~~AE~~K~~~~~-------~----------------------~~~~~~----i~~~----- 178 (239)
T TIGR02529 153 ----------------ISFEEAEEYKRGHKD-------E----------------------EEIFPV----VKPV----- 178 (239)
T ss_pred ----------------CCHHHHHHHHHhcCC-------H----------------------HHHHHH----HHHH-----
Confidence 123567888875321 0 000000 0110
Q ss_pred CCCCCccCCCCCCCHHHHHHHHHHhCCHHhHHHHhcCccccCCCCchhhHHHHHHHHHhhhCCCCceEEEEecCCCCCcc
Q 037470 327 PGMENFAENIPFRGLPQMVIDSINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVVSSGNATERR 406 (445)
Q Consensus 327 ~~~~~~~~~~~~~~L~~~I~~~i~~~~~d~r~~L~~nIvLtGG~s~i~Gl~~RL~~eL~~~~p~~~~v~v~~~~~~~~~~ 406 (445)
...+.+.|.+++.+.++ ..|+||||+|++||+.++|++.+.. ++ .. +.+|.
T Consensus 179 -----------~~~i~~~i~~~l~~~~~-------~~v~LtGG~a~ipgl~e~l~~~lg~------~v--~~---~~~P~ 229 (239)
T TIGR02529 179 -----------YQKMASIVKRHIEGQGV-------KDLYLVGGACSFSGFADVFEKQLGL------NV--IK---PQHPL 229 (239)
T ss_pred -----------HHHHHHHHHHHHHhCCC-------CEEEEECchhcchhHHHHHHHHhCC------Cc--cc---CCCCC
Confidence 12466666677765554 4799999999999999999998842 22 23 46788
Q ss_pred ceeEeeeEE
Q 037470 407 FSVWIGGSI 415 (445)
Q Consensus 407 ~~~W~Gasi 415 (445)
+++-+|+.+
T Consensus 230 ~~va~Gaa~ 238 (239)
T TIGR02529 230 YVTPLGIAM 238 (239)
T ss_pred eehhheeec
Confidence 898888865
No 25
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.68 E-value=5.8e-16 Score=146.48 Aligned_cols=207 Identities=22% Similarity=0.228 Sum_probs=149.0
Q ss_pred EeccCCCCeecCHHHHHHHHHHHhc---cccCCCCCCCcEEEecCCCCCHHHHHHHhc--cccCccCCeeeccceE-Eec
Q 037470 92 VLSPLKDGVVVDWDIVDSIWDHAFR---ECLLIDPKEHPMLLAEPSSNTQQQRESSAF--SFWVCVCGILVFCPVI-EFD 165 (445)
Q Consensus 92 ~~~P~~~g~i~d~d~~e~i~~~~~~---~~L~~~~~~~~vll~ep~~~~~~~r~~~~e--E~~~~~~~~~~~~p~v-~~~ 165 (445)
.+.++++|.|.|++.....++++.+ +.++.. -..++++.|...+..+|..+.+ +..| +.-. +..
T Consensus 54 ~~~~vr~G~i~di~~a~~~i~~~~~~ae~~~g~~--i~~v~~~vp~~~~~~~~~~~~~~~~~aG--------l~~~~ii~ 123 (267)
T PRK15080 54 WADVVRDGIVVDFIGAVTIVRRLKATLEEKLGRE--LTHAATAIPPGTSEGDPRAIINVVESAG--------LEVTHVLD 123 (267)
T ss_pred cccccCCCEEeeHHHHHHHHHHHHHHHHHHhCCC--cCeEEEEeCCCCCchhHHHHHHHHHHcC--------CceEEEec
Confidence 3467899999999999999998874 234443 2457778999887777777777 8888 8888 999
Q ss_pred hhhhhhhccCCceEEEEEcCCCceEEEEeecceecCccceEecccHHHHHHHHHHHHHhcCCcccCccccccccCCCCCc
Q 037470 166 ALVLTSFALGRATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRYSFKRKENRPGEF 245 (445)
Q Consensus 166 ~~~la~~~~g~~tglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~p~~~~~~~~~~~~~~ 245 (445)
++.+++.+++...++|||||+++|+++-+.+|.+... ...++||+++|+.|.+.+.
T Consensus 124 e~~A~a~~~~~~~~~vvDIGggtt~i~v~~~g~~~~~--~~~~~GG~~it~~Ia~~l~---------------------- 179 (267)
T PRK15080 124 EPTAAAAVLGIDNGAVVDIGGGTTGISILKDGKVVYS--ADEPTGGTHMSLVLAGAYG---------------------- 179 (267)
T ss_pred hHHHHHHHhCCCCcEEEEeCCCcEEEEEEECCeEEEE--ecccCchHHHHHHHHHHhC----------------------
Confidence 9999988887777899999999999999999988775 5689999999999987762
Q ss_pred ceeccCCCCCchhHHhHhHHHHHHHHhhcceecCCCcCCccccCCCCCceeECCCCceEeeCcccccccccccCCCCCCC
Q 037470 246 QIVDLDFPNTTESYKLYCQRVIASDIKECVCRAPDTPYDESAYSNIPMTPYELPDGQVIEIGADRFKTPDVLFNPSLVQT 325 (445)
Q Consensus 246 ~~~~~~~~~~~~s~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~lpdg~~i~l~~er~~~~E~lF~p~~~~~ 325 (445)
.+.+.++++|..... . .+...+-+.+
T Consensus 180 -----------------i~~~eAE~lK~~~~~-------~----------------------~~~~~ii~~~-------- 205 (267)
T PRK15080 180 -----------------ISFEEAEQYKRDPKH-------H----------------------KEIFPVVKPV-------- 205 (267)
T ss_pred -----------------CCHHHHHHHHhccCC-------H----------------------HHHHHHHHHH--------
Confidence 123456777765310 0 0000000000
Q ss_pred CCCCCCccCCCCCCCHHHHHHHHHHhCCHHhHHHHhcCccccCCCCchhhHHHHHHHHHhhhCCCCceEEEEecCCCCCc
Q 037470 326 IPGMENFAENIPFRGLPQMVIDSINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVVSSGNATER 405 (445)
Q Consensus 326 ~~~~~~~~~~~~~~~L~~~I~~~i~~~~~d~r~~L~~nIvLtGG~s~i~Gl~~RL~~eL~~~~p~~~~v~v~~~~~~~~~ 405 (445)
...+.+.|.+.+...+ ...|+||||+|++||+.+.+++.+.. +++ . +.+|
T Consensus 206 ------------~~~i~~~i~~~l~~~~-------~~~IvLtGG~s~lpgl~e~l~~~lg~------~v~--~---~~~P 255 (267)
T PRK15080 206 ------------VEKMASIVARHIEGQD-------VEDIYLVGGTCCLPGFEEVFEKQTGL------PVH--K---PQHP 255 (267)
T ss_pred ------------HHHHHHHHHHHHhcCC-------CCEEEEECCcccchhHHHHHHHHhCC------Ccc--c---CCCc
Confidence 1134555555555433 36899999999999999999999842 222 2 3567
Q ss_pred cceeEeeeEEe
Q 037470 406 RFSVWIGGSIL 416 (445)
Q Consensus 406 ~~~~W~Gasil 416 (445)
.+++=+|+.++
T Consensus 256 ~~~~a~Gaa~~ 266 (267)
T PRK15080 256 LFVTPLGIALS 266 (267)
T ss_pred hHHHHHHHHhh
Confidence 78888887665
No 26
>CHL00094 dnaK heat shock protein 70
Probab=99.57 E-value=2.9e-14 Score=150.55 Aligned_cols=246 Identities=17% Similarity=0.183 Sum_probs=149.0
Q ss_pred CCeecCHHHHHHHHHHHhc---cccCCCCCCCcEEEecCCCCCHHHHHHHhc--cccCccCCeeeccceE-Eechhhhhh
Q 037470 98 DGVVVDWDIVDSIWDHAFR---ECLLIDPKEHPMLLAEPSSNTQQQRESSAF--SFWVCVCGILVFCPVI-EFDALVLTS 171 (445)
Q Consensus 98 ~g~i~d~d~~e~i~~~~~~---~~L~~~~~~~~vll~ep~~~~~~~r~~~~e--E~~~~~~~~~~~~p~v-~~~~~~la~ 171 (445)
...+..-+....+++++.. ..++. .-..++|+.|..++..+|+.+.+ +..| +..+ ++++|.+|+
T Consensus 107 ~~~~s~eei~a~iL~~l~~~ae~~lg~--~v~~~VItVPa~f~~~qR~a~~~Aa~~AG--------l~v~~li~EptAAA 176 (621)
T CHL00094 107 NKDFSPEEISAQVLRKLVEDASKYLGE--TVTQAVITVPAYFNDSQRQATKDAGKIAG--------LEVLRIINEPTAAS 176 (621)
T ss_pred CeEEcHHHHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHHHHHHHHHHHcC--------CceEEEeccHHHHH
Confidence 3334444555556666552 23332 22458899999999999999988 8888 8899 999999999
Q ss_pred hccCC-----ceEEEEEcCCCceEEEEeeccee---cCccceEecccHHHHHHHHHHHHHhcCCcccCccccccccCCCC
Q 037470 172 FALGR-----ATSLVVDCGGGSTTVAPVHDGYV---LQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRYSFKRKENRPG 243 (445)
Q Consensus 172 ~~~g~-----~tglVVDiG~~~t~v~pV~~G~~---~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~p~~~~~~~~~~~~ 243 (445)
+++|. ...+|+|+|+++++|+.+.-+.. +..+....++||.++|+.|.+++.++-..- +.+
T Consensus 177 lay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~~---~~~-------- 245 (621)
T CHL00094 177 LAYGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKEFKKK---EGI-------- 245 (621)
T ss_pred HHhccccCCCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHHHHHHHHHHH---hCC--------
Confidence 98875 46899999999999988764321 112223468999999999998876531000 000
Q ss_pred CcceeccCCCCCchhHHhHhHHHHHHHHhhcceecCCCcCCccccCCCCCceeECC------CC---ceEeeCccccc-c
Q 037470 244 EFQIVDLDFPNTTESYKLYCQRVIASDIKECVCRAPDTPYDESAYSNIPMTPYELP------DG---QVIEIGADRFK-T 313 (445)
Q Consensus 244 ~~~~~~~~~~~~~~s~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~lp------dg---~~i~l~~er~~-~ 313 (445)
+.......+ ..-...++++|+.+...... ...+| +| ....+..++|. .
T Consensus 246 -------~~~~~~~~~--~~L~~~aE~aK~~LS~~~~~-------------~i~i~~~~~~~~g~~~~~~~itR~~fe~l 303 (621)
T CHL00094 246 -------DLSKDRQAL--QRLTEAAEKAKIELSNLTQT-------------EINLPFITATQTGPKHIEKTLTRAKFEEL 303 (621)
T ss_pred -------CcccCHHHH--HHHHHHHHHHHHhcCCCCce-------------EEEEeecccCCCCCeeEEEEEcHHHHHHH
Confidence 000000011 12235678888886532211 11111 01 12234333331 1
Q ss_pred cccccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHhCCHHhHHHHhcCccccCCCCchhhHHHHHHHHHhhhCCCCce
Q 037470 314 PDVLFNPSLVQTIPGMENFAENIPFRGLPQMVIDSINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAAR 393 (445)
Q Consensus 314 ~E~lF~p~~~~~~~~~~~~~~~~~~~~L~~~I~~~i~~~~~d~r~~L~~nIvLtGG~s~i~Gl~~RL~~eL~~~~p~~~~ 393 (445)
.+.++ ..+.+.|.+++.+.. +...-...|+|+||+|.+|++.+.|++.+...
T Consensus 304 ~~~l~--------------------~~~~~~i~~~L~~a~--~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~------ 355 (621)
T CHL00094 304 CSDLI--------------------NRCRIPVENALKDAK--LDKSDIDEVVLVGGSTRIPAIQELVKKLLGKK------ 355 (621)
T ss_pred HHHHH--------------------HHHHHHHHHHHHHcC--CChhhCcEEEEECCccCChHHHHHHHHHhCCC------
Confidence 11111 134444555555442 22333588999999999999999999877421
Q ss_pred EEEEecCCCCCccceeEeeeEEeecc
Q 037470 394 VKVVSSGNATERRFSVWIGGSILASL 419 (445)
Q Consensus 394 v~v~~~~~~~~~~~~~W~Gasilasl 419 (445)
+.. ..+|..++.+||+++|..
T Consensus 356 --~~~---~~~pdeava~GAA~~aa~ 376 (621)
T CHL00094 356 --PNQ---SVNPDEVVAIGAAVQAGV 376 (621)
T ss_pred --cCc---CCCchhHHHhhhHHHHHH
Confidence 112 355677899999998864
No 27
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=99.52 E-value=1.8e-13 Score=145.15 Aligned_cols=225 Identities=18% Similarity=0.245 Sum_probs=142.6
Q ss_pred CcEEEecCCCCCHHHHHHHhc--cccCccCCeeeccceE-EechhhhhhhccCC-----ceEEEEEcCCCceEEEEee--
Q 037470 126 HPMLLAEPSSNTQQQRESSAF--SFWVCVCGILVFCPVI-EFDALVLTSFALGR-----ATSLVVDCGGGSTTVAPVH-- 195 (445)
Q Consensus 126 ~~vll~ep~~~~~~~r~~~~e--E~~~~~~~~~~~~p~v-~~~~~~la~~~~g~-----~tglVVDiG~~~t~v~pV~-- 195 (445)
..++||.|.+++..+|+.+.+ +..| ++.+ ++++|.+|++++|. ..-+|+|+|+++++|+.+.
T Consensus 175 ~~~VITVPa~f~~~qR~a~~~Aa~~AG--------l~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~ 246 (663)
T PTZ00400 175 KQAVITVPAYFNDSQRQATKDAGKIAG--------LDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEIL 246 (663)
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHcC--------CceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEec
Confidence 569999999999999999999 8889 9999 99999999999875 4789999999999998765
Q ss_pred cceec-CccceEecccHHHHHHHHHHHHHhcCCcccCccccccccCCCCCcceeccCCCCCchhHHhHhHHHHHHHHhhc
Q 037470 196 DGYVL-QKGVTTSPIGGEFLTNCLMKSLESKGITIKPRYSFKRKENRPGEFQIVDLDFPNTTESYKLYCQRVIASDIKEC 274 (445)
Q Consensus 196 ~G~~~-~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~iKe~ 274 (445)
+|... ..+.....+||.++|..|.+++.++.... +.. +.......+ ..-...++++|+.
T Consensus 247 ~g~~~v~a~~gd~~LGG~d~D~~l~~~l~~~f~~~---~~~---------------~~~~~~~a~--~~L~~~aE~aK~~ 306 (663)
T PTZ00400 247 GGVFEVKATNGNTSLGGEDFDQRILNYLIAEFKKQ---QGI---------------DLKKDKLAL--QRLREAAETAKIE 306 (663)
T ss_pred CCeeEEEecccCCCcCHHHHHHHHHHHHHHHhhhh---cCC---------------CcccCHHHH--HHHHHHHHHHHHH
Confidence 55442 22233468999999999998886532100 000 000000011 1123457888888
Q ss_pred ceecCCCcCCccccCCCCCceeECCC--C---ceEeeCcccccccccccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHH
Q 037470 275 VCRAPDTPYDESAYSNIPMTPYELPD--G---QVIEIGADRFKTPDVLFNPSLVQTIPGMENFAENIPFRGLPQMVIDSI 349 (445)
Q Consensus 275 ~~~v~~~~~~~~~~~~~~~~~~~lpd--g---~~i~l~~er~~~~E~lF~p~~~~~~~~~~~~~~~~~~~~L~~~I~~~i 349 (445)
++.-..... ...+...| | ..+.+..+.| |-++.|- ...+.+.|.+++
T Consensus 307 LS~~~~~~i---------~i~~~~~d~~g~~~~~~~itR~ef---e~l~~~l----------------~~~~~~~i~~~L 358 (663)
T PTZ00400 307 LSSKTQTEI---------NLPFITADQSGPKHLQIKLSRAKL---EELTHDL----------------LKKTIEPCEKCI 358 (663)
T ss_pred cCCCCceEE---------EEEeeccCCCCceEEEEEECHHHH---HHHHHHH----------------HHHHHHHHHHHH
Confidence 753221100 00010111 1 2344544433 1222221 124556666677
Q ss_pred HhCCHHhHHHHhcCccccCCCCchhhHHHHHHHHHhhhCCCCceEEEEecCCCCCccceeEeeeEEeecc
Q 037470 350 NKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVVSSGNATERRFSVWIGGSILASL 419 (445)
Q Consensus 350 ~~~~~d~r~~L~~nIvLtGG~s~i~Gl~~RL~~eL~~~~p~~~~v~v~~~~~~~~~~~~~W~Gasilasl 419 (445)
..... ...-...|+|+||+|.+|++.++|++.+... +.. ..+|..++-.||++.|..
T Consensus 359 ~~a~~--~~~~i~~ViLvGGssriP~v~~~l~~~f~~~--------~~~---~~npdeaVA~GAAi~aa~ 415 (663)
T PTZ00400 359 KDAGV--KKDELNDVILVGGMTRMPKVSETVKKIFGKE--------PSK---GVNPDEAVAMGAAIQAGV 415 (663)
T ss_pred HHcCC--CHHHCcEEEEECCccCChHHHHHHHHHhCCC--------ccc---CCCCccceeeccHHHHHh
Confidence 66532 2233588999999999999999998876421 112 356678888899988763
No 28
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=99.50 E-value=1.6e-13 Score=144.16 Aligned_cols=242 Identities=20% Similarity=0.251 Sum_probs=148.8
Q ss_pred CeecCHHHHHHHHHHHhc---cccCCCCCCCcEEEecCCCCCHHHHHHHhc--cccCccCCeeeccceE-Eechhhhhhh
Q 037470 99 GVVVDWDIVDSIWDHAFR---ECLLIDPKEHPMLLAEPSSNTQQQRESSAF--SFWVCVCGILVFCPVI-EFDALVLTSF 172 (445)
Q Consensus 99 g~i~d~d~~e~i~~~~~~---~~L~~~~~~~~vll~ep~~~~~~~r~~~~e--E~~~~~~~~~~~~p~v-~~~~~~la~~ 172 (445)
|.+.-.+....+++++.. ..++.. -..++||.|..++..+|+.+.+ +..| +..+ ++++|.+|++
T Consensus 102 ~~~~p~ei~a~iL~~lk~~a~~~lg~~--v~~~VItVPa~f~~~qR~a~~~Aa~~AG--------l~v~~li~EPtAAAl 171 (599)
T TIGR01991 102 GTVTPVEVSAEILKKLKQRAEESLGGD--LVGAVITVPAYFDDAQRQATKDAARLAG--------LNVLRLLNEPTAAAV 171 (599)
T ss_pred CEEcHHHHHHHHHHHHHHHHHHHhCCC--cceEEEEECCCCCHHHHHHHHHHHHHcC--------CCceEEecCHHHHHH
Confidence 333333444455555542 344332 3569999999999999999998 9999 9999 9999999998
Q ss_pred ccCC-----ceEEEEEcCCCceEEEEee--ccee-cCccceEecccHHHHHHHHHHHHHhcC-CcccCccccccccCCCC
Q 037470 173 ALGR-----ATSLVVDCGGGSTTVAPVH--DGYV-LQKGVTTSPIGGEFLTNCLMKSLESKG-ITIKPRYSFKRKENRPG 243 (445)
Q Consensus 173 ~~g~-----~tglVVDiG~~~t~v~pV~--~G~~-~~~~~~~~~~GG~~lt~~l~~~l~~~~-~~~~p~~~~~~~~~~~~ 243 (445)
++|. .+-+|+|+|+++++|+.+. +|.. +..+.....+||.++|+.|.+++.++. .... .
T Consensus 172 ay~~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~~~~~~~~----~-------- 239 (599)
T TIGR01991 172 AYGLDKASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQLGISAD----L-------- 239 (599)
T ss_pred HHhhccCCCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHHhhCCCCC----C--------
Confidence 8763 4679999999999998775 4432 111223358999999999999986542 1100 0
Q ss_pred CcceeccCCCCCchhHHhHhHHHHHHHHhhcceecCCCcCCccccCCCCCceeECCCC--ceEeeCcccccccccccCCC
Q 037470 244 EFQIVDLDFPNTTESYKLYCQRVIASDIKECVCRAPDTPYDESAYSNIPMTPYELPDG--QVIEIGADRFKTPDVLFNPS 321 (445)
Q Consensus 244 ~~~~~~~~~~~~~~s~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~lpdg--~~i~l~~er~~~~E~lF~p~ 321 (445)
..... ..-...++++|+.++.-... ...+.. +| ..+.+..+.| |-++.|.
T Consensus 240 -----------~~~~~--~~L~~~ae~aK~~LS~~~~~-----------~i~i~~-~g~~~~~~itr~ef---e~l~~~l 291 (599)
T TIGR01991 240 -----------NPEDQ--RLLLQAARAAKEALTDAESV-----------EVDFTL-DGKDFKGKLTRDEF---EALIQPL 291 (599)
T ss_pred -----------CHHHH--HHHHHHHHHHHHhCCCCceE-----------EEEEEE-CCcEEEEEEeHHHH---HHHHHHH
Confidence 00000 11234567788766421110 111112 22 2334444433 2222221
Q ss_pred CCCCCCCCCCccCCCCCCCHHHHHHHHHHhCCHHhHHHHhcCccccCCCCchhhHHHHHHHHHhhhCCCCceEEEEecCC
Q 037470 322 LVQTIPGMENFAENIPFRGLPQMVIDSINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVVSSGN 401 (445)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~L~~~I~~~i~~~~~d~r~~L~~nIvLtGG~s~i~Gl~~RL~~eL~~~~p~~~~v~v~~~~~ 401 (445)
...+.+.|.+++..... ...-...|+|+||+|.+|++.++|++.+... +..
T Consensus 292 ----------------l~~i~~~i~~~L~~a~~--~~~~id~ViLvGGssriP~V~~~l~~~f~~~--------~~~--- 342 (599)
T TIGR01991 292 ----------------VQKTLSICRRALRDAGL--SVEEIKGVVLVGGSTRMPLVRRAVAELFGQE--------PLT--- 342 (599)
T ss_pred ----------------HHHHHHHHHHHHHHcCC--ChhhCCEEEEECCcCCChHHHHHHHHHhCCC--------CCC---
Confidence 12455666666665432 2233588999999999999999999876421 111
Q ss_pred CCCccceeEeeeEEeecc
Q 037470 402 ATERRFSVWIGGSILASL 419 (445)
Q Consensus 402 ~~~~~~~~W~Gasilasl 419 (445)
..+|..++-.||++.|..
T Consensus 343 ~~npdeaVA~GAai~a~~ 360 (599)
T TIGR01991 343 DIDPDQVVALGAAIQADL 360 (599)
T ss_pred CCCCcHHHHHHHHHHHHH
Confidence 345667777888877753
No 29
>PLN03184 chloroplast Hsp70; Provisional
Probab=99.50 E-value=3.1e-13 Score=143.40 Aligned_cols=249 Identities=17% Similarity=0.192 Sum_probs=149.7
Q ss_pred CCeecCHHHHHHHHHHHhc---cccCCCCCCCcEEEecCCCCCHHHHHHHhc--cccCccCCeeeccceE-Eechhhhhh
Q 037470 98 DGVVVDWDIVDSIWDHAFR---ECLLIDPKEHPMLLAEPSSNTQQQRESSAF--SFWVCVCGILVFCPVI-EFDALVLTS 171 (445)
Q Consensus 98 ~g~i~d~d~~e~i~~~~~~---~~L~~~~~~~~vll~ep~~~~~~~r~~~~e--E~~~~~~~~~~~~p~v-~~~~~~la~ 171 (445)
...+.-.+....+++++.. ..++. .-..++||.|.+++..+|+.+.+ +..| +..+ ++++|.+|+
T Consensus 144 ~~~~speei~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qR~a~~~Aa~~AG--------l~v~~li~EPtAAA 213 (673)
T PLN03184 144 GKQFAAEEISAQVLRKLVDDASKFLND--KVTKAVITVPAYFNDSQRTATKDAGRIAG--------LEVLRIINEPTAAS 213 (673)
T ss_pred CeEEcHHHHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHHHHHHHHHHHCC--------CCeEEEeCcHHHHH
Confidence 3334444555666766653 23332 23579999999999999999988 8889 9999 999999999
Q ss_pred hccCC-----ceEEEEEcCCCceEEEEee--ccee-cCccceEecccHHHHHHHHHHHHHhcCCcccCccccccccCCCC
Q 037470 172 FALGR-----ATSLVVDCGGGSTTVAPVH--DGYV-LQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRYSFKRKENRPG 243 (445)
Q Consensus 172 ~~~g~-----~tglVVDiG~~~t~v~pV~--~G~~-~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~p~~~~~~~~~~~~ 243 (445)
+++|. ..-+|+|+|+++++|+.+. +|.. +..+.....+||.++|+.|.+++.++.... +..
T Consensus 214 layg~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~~~~~~f~~~---~~~-------- 282 (673)
T PLN03184 214 LAYGFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKKD---EGI-------- 282 (673)
T ss_pred HHhhcccCCCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHHHHHHHHHhh---cCC--------
Confidence 88764 4689999999999998775 3322 112223468999999999998886532100 000
Q ss_pred CcceeccCCCCCchhHHhHhHHHHHHHHhhcceecCCCcCCccccCCCCCceeE--CCCC---ceEeeCccccc-ccccc
Q 037470 244 EFQIVDLDFPNTTESYKLYCQRVIASDIKECVCRAPDTPYDESAYSNIPMTPYE--LPDG---QVIEIGADRFK-TPDVL 317 (445)
Q Consensus 244 ~~~~~~~~~~~~~~s~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~--lpdg---~~i~l~~er~~-~~E~l 317 (445)
+.......+ ..-...++++|+.+......... ..+. ..+| ..+.+..+.|. ..+.+
T Consensus 283 -------d~~~~~~~~--~rL~~~aEkaK~~LS~~~~~~i~---------i~~~~~~~~g~~~~~~~itR~~fe~l~~~l 344 (673)
T PLN03184 283 -------DLLKDKQAL--QRLTEAAEKAKIELSSLTQTSIS---------LPFITATADGPKHIDTTLTRAKFEELCSDL 344 (673)
T ss_pred -------CcccCHHHH--HHHHHHHHHHHHhcCCCCcceEE---------EEeeeccCCCCceEEEEECHHHHHHHHHHH
Confidence 000000111 11234678888876532211100 0000 0111 12334444331 11112
Q ss_pred cCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHhCCHHhHHHHhcCccccCCCCchhhHHHHHHHHHhhhCCCCceEEEE
Q 037470 318 FNPSLVQTIPGMENFAENIPFRGLPQMVIDSINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVV 397 (445)
Q Consensus 318 F~p~~~~~~~~~~~~~~~~~~~~L~~~I~~~i~~~~~d~r~~L~~nIvLtGG~s~i~Gl~~RL~~eL~~~~p~~~~v~v~ 397 (445)
+ ..+.+.|.+++.....+. .=...|+|+||+|.+|.+.++|++.+... + .
T Consensus 345 ~--------------------~r~~~~i~~~L~~a~~~~--~dId~ViLvGGssriP~V~~~i~~~fg~~------~--~ 394 (673)
T PLN03184 345 L--------------------DRCKTPVENALRDAKLSF--KDIDEVILVGGSTRIPAVQELVKKLTGKD------P--N 394 (673)
T ss_pred H--------------------HHHHHHHHHHHHHcCCCh--hHccEEEEECCccccHHHHHHHHHHhCCC------c--c
Confidence 1 135556666666554322 23489999999999999999998877421 1 1
Q ss_pred ecCCCCCccceeEeeeEEeec
Q 037470 398 SSGNATERRFSVWIGGSILAS 418 (445)
Q Consensus 398 ~~~~~~~~~~~~W~Gasilas 418 (445)
. ..+|..++-+||++.|.
T Consensus 395 ~---~~npdeaVA~GAAi~aa 412 (673)
T PLN03184 395 V---TVNPDEVVALGAAVQAG 412 (673)
T ss_pred c---ccCcchHHHHHHHHHHH
Confidence 1 24556777788888775
No 30
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=99.48 E-value=2.4e-13 Score=144.05 Aligned_cols=225 Identities=17% Similarity=0.217 Sum_probs=140.2
Q ss_pred CcEEEecCCCCCHHHHHHHhc--cccCccCCeeeccceE-EechhhhhhhccCC-----ceEEEEEcCCCceEEEEeecc
Q 037470 126 HPMLLAEPSSNTQQQRESSAF--SFWVCVCGILVFCPVI-EFDALVLTSFALGR-----ATSLVVDCGGGSTTVAPVHDG 197 (445)
Q Consensus 126 ~~vll~ep~~~~~~~r~~~~e--E~~~~~~~~~~~~p~v-~~~~~~la~~~~g~-----~tglVVDiG~~~t~v~pV~~G 197 (445)
..++||.|..++..+|+.+.+ +..| +..+ ++++|.+|++++|. .+.+|+|+|+++++|+.+.-+
T Consensus 134 ~~~VItVPa~f~~~qR~a~~~Aa~~AG--------l~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~ 205 (627)
T PRK00290 134 TEAVITVPAYFNDAQRQATKDAGKIAG--------LEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIG 205 (627)
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHcC--------CceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEe
Confidence 469999999999999999998 8889 9999 99999999988763 568999999999999876532
Q ss_pred --ee-cCccceEecccHHHHHHHHHHHHHhcCCcccCccccccccCCCCCcceeccCCCCCchhHHhHhHHHHHHHHhhc
Q 037470 198 --YV-LQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRYSFKRKENRPGEFQIVDLDFPNTTESYKLYCQRVIASDIKEC 274 (445)
Q Consensus 198 --~~-~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~iKe~ 274 (445)
.. +..+....++||.++|..|.+++.++-..- +.. ++......+ ..-...++++|+.
T Consensus 206 ~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~~---~~~---------------~~~~~~~~~--~rL~~~ae~aK~~ 265 (627)
T PRK00290 206 DGVFEVLSTNGDTHLGGDDFDQRIIDYLADEFKKE---NGI---------------DLRKDKMAL--QRLKEAAEKAKIE 265 (627)
T ss_pred CCeEEEEEecCCCCcChHHHHHHHHHHHHHHHHHh---hCC---------------CcccCHHHH--HHHHHHHHHHHHH
Confidence 22 112223468999999999998876532100 000 000000011 1123467888887
Q ss_pred ceecCCCcCCccccCCCCCceeECCC--C---ceEeeCcccccccccccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHH
Q 037470 275 VCRAPDTPYDESAYSNIPMTPYELPD--G---QVIEIGADRFKTPDVLFNPSLVQTIPGMENFAENIPFRGLPQMVIDSI 349 (445)
Q Consensus 275 ~~~v~~~~~~~~~~~~~~~~~~~lpd--g---~~i~l~~er~~~~E~lF~p~~~~~~~~~~~~~~~~~~~~L~~~I~~~i 349 (445)
++........ ..+...| | ..+.+..+.| |-++.|- ...+.+.|.+++
T Consensus 266 LS~~~~~~i~---------i~~~~~d~~g~~~~~~~itR~~f---e~l~~~l----------------~~~~~~~i~~~l 317 (627)
T PRK00290 266 LSSAQQTEIN---------LPFITADASGPKHLEIKLTRAKF---EELTEDL----------------VERTIEPCKQAL 317 (627)
T ss_pred cCCCCeEEEE---------EeecccCCCCCeEEEEEECHHHH---HHHHHHH----------------HHHHHHHHHHHH
Confidence 7532211000 0010111 1 2344544433 2222221 114556666666
Q ss_pred HhCCHHhHHHHhcCccccCCCCchhhHHHHHHHHHhhhCCCCceEEEEecCCCCCccceeEeeeEEeecc
Q 037470 350 NKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVVSSGNATERRFSVWIGGSILASL 419 (445)
Q Consensus 350 ~~~~~d~r~~L~~nIvLtGG~s~i~Gl~~RL~~eL~~~~p~~~~v~v~~~~~~~~~~~~~W~Gasilasl 419 (445)
...... ..-...|+|+||+|.+|.+.++|++.+... +.. ..+|..++..||+++|..
T Consensus 318 ~~a~~~--~~~id~ViLvGGssriP~v~~~l~~~fg~~--------~~~---~~npdeava~GAa~~aa~ 374 (627)
T PRK00290 318 KDAGLS--VSDIDEVILVGGSTRMPAVQELVKEFFGKE--------PNK---GVNPDEVVAIGAAIQGGV 374 (627)
T ss_pred HHcCCC--hhhCcEEEEECCcCCChHHHHHHHHHhCCC--------CCc---CcCChHHHHHhHHHHHHH
Confidence 665432 223488999999999999999998876321 112 356678889999988763
No 31
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=99.48 E-value=2.7e-13 Score=143.08 Aligned_cols=225 Identities=16% Similarity=0.223 Sum_probs=139.6
Q ss_pred CcEEEecCCCCCHHHHHHHhc--cccCccCCeeeccceE-EechhhhhhhccCC------ceEEEEEcCCCceEEEEee-
Q 037470 126 HPMLLAEPSSNTQQQRESSAF--SFWVCVCGILVFCPVI-EFDALVLTSFALGR------ATSLVVDCGGGSTTVAPVH- 195 (445)
Q Consensus 126 ~~vll~ep~~~~~~~r~~~~e--E~~~~~~~~~~~~p~v-~~~~~~la~~~~g~------~tglVVDiG~~~t~v~pV~- 195 (445)
..++|+.|..++..+|+.+.+ +..| +..+ ++++|.+|++++|. .+-+|+|+|+++++|+.+.
T Consensus 131 ~~~VItVPa~f~~~qR~a~~~Aa~~AG--------l~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~ 202 (595)
T TIGR02350 131 TEAVITVPAYFNDAQRQATKDAGKIAG--------LEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEI 202 (595)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHcC--------CceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEe
Confidence 469999999999999999998 8889 9999 99999999887753 4679999999999998765
Q ss_pred -ccee-cCccceEecccHHHHHHHHHHHHHhcCCcccCccccccccCCCCCcceeccCCCCCchhHHhHhHHHHHHHHhh
Q 037470 196 -DGYV-LQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRYSFKRKENRPGEFQIVDLDFPNTTESYKLYCQRVIASDIKE 273 (445)
Q Consensus 196 -~G~~-~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~iKe 273 (445)
+|.. +..+.....+||.++|+.|.+++.++.... +.+ ++......+ ..-...++++|+
T Consensus 203 ~~~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~~~~~---~~~---------------~~~~~~~~~--~~L~~~ae~aK~ 262 (595)
T TIGR02350 203 GDGVFEVLSTAGDTHLGGDDFDQRIIDWLADEFKKE---EGI---------------DLSKDKMAL--QRLKEAAEKAKI 262 (595)
T ss_pred cCCeEEEEEecCCcccCchhHHHHHHHHHHHHHHHh---hCC---------------CcccCHHHH--HHHHHHHHHHHH
Confidence 3322 112223357999999999998876432100 000 000000011 112346788888
Q ss_pred cceecCCCcCCccccCCCCCceeECCC--C---ceEeeCcccccccccccCCCCCCCCCCCCCccCCCCCCCHHHHHHHH
Q 037470 274 CVCRAPDTPYDESAYSNIPMTPYELPD--G---QVIEIGADRFKTPDVLFNPSLVQTIPGMENFAENIPFRGLPQMVIDS 348 (445)
Q Consensus 274 ~~~~v~~~~~~~~~~~~~~~~~~~lpd--g---~~i~l~~er~~~~E~lF~p~~~~~~~~~~~~~~~~~~~~L~~~I~~~ 348 (445)
.++........ ..+...| | ..+.+..+.| |-++.|- ...+.++|.++
T Consensus 263 ~LS~~~~~~i~---------i~~~~~~~~g~~~~~~~itr~~f---e~l~~~l----------------~~~~~~~i~~~ 314 (595)
T TIGR02350 263 ELSSVLSTEIN---------LPFITADASGPKHLEMTLTRAKF---EELTADL----------------VERTKEPVRQA 314 (595)
T ss_pred HcCCCCceEEE---------eeecccCCCCCeeEEEEEeHHHH---HHHHHHH----------------HHHHHHHHHHH
Confidence 87532211100 0010111 1 2344444443 2222221 12455666666
Q ss_pred HHhCCHHhHHHHhcCccccCCCCchhhHHHHHHHHHhhhCCCCceEEEEecCCCCCccceeEeeeEEeecc
Q 037470 349 INKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVVSSGNATERRFSVWIGGSILASL 419 (445)
Q Consensus 349 i~~~~~d~r~~L~~nIvLtGG~s~i~Gl~~RL~~eL~~~~p~~~~v~v~~~~~~~~~~~~~W~Gasilasl 419 (445)
+...... ..-...|+|+||+|.+|++.+.|++.+.. ++.. ..+|..++..||++.|..
T Consensus 315 l~~a~~~--~~~i~~V~LvGGssriP~v~~~i~~~f~~--------~~~~---~~~pdeava~GAa~~aa~ 372 (595)
T TIGR02350 315 LKDAGLS--ASDIDEVILVGGSTRIPAVQELVKDFFGK--------EPNK---SVNPDEVVAIGAAIQGGV 372 (595)
T ss_pred HHHcCCC--HhHCcEEEEECCcccChHHHHHHHHHhCC--------cccC---CcCcHHHHHHHHHHHHHH
Confidence 6655322 23358899999999999999999886642 1222 356677888999988763
No 32
>PRK13411 molecular chaperone DnaK; Provisional
Probab=99.47 E-value=2.8e-13 Score=143.55 Aligned_cols=225 Identities=18% Similarity=0.266 Sum_probs=138.5
Q ss_pred CcEEEecCCCCCHHHHHHHhc--cccCccCCeeeccceE-EechhhhhhhccCC------ceEEEEEcCCCceEEEEee-
Q 037470 126 HPMLLAEPSSNTQQQRESSAF--SFWVCVCGILVFCPVI-EFDALVLTSFALGR------ATSLVVDCGGGSTTVAPVH- 195 (445)
Q Consensus 126 ~~vll~ep~~~~~~~r~~~~e--E~~~~~~~~~~~~p~v-~~~~~~la~~~~g~------~tglVVDiG~~~t~v~pV~- 195 (445)
..++||.|.+++..+|+.+.+ +..| +..+ ++++|.+|++++|. ..-+|+|+|+++++|+.+.
T Consensus 134 ~~~VITVPa~f~~~qR~a~~~Aa~~AG--------l~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~ 205 (653)
T PRK13411 134 TQAVITVPAYFTDAQRQATKDAGTIAG--------LEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQL 205 (653)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHHHcC--------CCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEE
Confidence 569999999999999999998 8889 9999 99999999988864 3579999999999998664
Q ss_pred -ccee-cCccceEecccHHHHHHHHHHHHHhcCCcccCccccccccCCCCCcceeccCCCCCchhHHhHhHHHHHHHHhh
Q 037470 196 -DGYV-LQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRYSFKRKENRPGEFQIVDLDFPNTTESYKLYCQRVIASDIKE 273 (445)
Q Consensus 196 -~G~~-~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~iKe 273 (445)
+|.. +..+.....+||.++++.|.+++.++.... +. .++......+ ..-...+++.|+
T Consensus 206 ~~~~~~V~at~gd~~LGG~dfD~~l~~~l~~~f~~~---~~---------------~d~~~~~~~~--~rL~~~aE~aK~ 265 (653)
T PRK13411 206 GDGVFEVKATAGNNHLGGDDFDNCIVDWLVENFQQQ---EG---------------IDLSQDKMAL--QRLREAAEKAKI 265 (653)
T ss_pred eCCEEEEEEEecCCCcCHHHHHHHHHHHHHHHHHHh---hC---------------CCcccCHHHH--HHHHHHHHHHHH
Confidence 3322 122223357999999999998886532100 00 0000000011 112356788888
Q ss_pred cceecCCCcCCccccCCCCCceeECCC-----CceEeeCcccccccccccCCCCCCCCCCCCCccCCCCCCCHHHHHHHH
Q 037470 274 CVCRAPDTPYDESAYSNIPMTPYELPD-----GQVIEIGADRFKTPDVLFNPSLVQTIPGMENFAENIPFRGLPQMVIDS 348 (445)
Q Consensus 274 ~~~~v~~~~~~~~~~~~~~~~~~~lpd-----g~~i~l~~er~~~~E~lF~p~~~~~~~~~~~~~~~~~~~~L~~~I~~~ 348 (445)
.++........ ..+...| ...+.+..+.| |-++.|- ...+.+.|.++
T Consensus 266 ~LS~~~~~~i~---------i~~~~~d~~~~~~~~~~itR~~f---e~l~~~l----------------~~~~~~~i~~~ 317 (653)
T PRK13411 266 ELSSMLTTSIN---------LPFITADETGPKHLEMELTRAKF---EELTKDL----------------VEATIEPMQQA 317 (653)
T ss_pred hcCCCCceEEE---------EeeeccCCCCCeeEEEEEcHHHH---HHHHHHH----------------HHHHHHHHHHH
Confidence 76532211000 0111111 12344554443 2222221 12455666666
Q ss_pred HHhCCHHhHHHHhcCccccCCCCchhhHHHHHHHHHhhhCCCCceEEEEecCCCCCccceeEeeeEEeec
Q 037470 349 INKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVVSSGNATERRFSVWIGGSILAS 418 (445)
Q Consensus 349 i~~~~~d~r~~L~~nIvLtGG~s~i~Gl~~RL~~eL~~~~p~~~~v~v~~~~~~~~~~~~~W~Gasilas 418 (445)
+.... +...-...|+|+||+|.+|.+.++|++.+... ++.. ..+|..++-.||++.|.
T Consensus 318 L~~a~--~~~~~id~ViLvGGssriP~v~~~l~~~f~~~-------~~~~---~~npdeaVA~GAAi~aa 375 (653)
T PRK13411 318 LKDAG--LKPEDIDRVILVGGSTRIPAVQEAIQKFFGGK-------QPDR---SVNPDEAVALGAAIQAG 375 (653)
T ss_pred HHHcC--CCHHHCcEEEEECCCCCcchHHHHHHHHcCCc-------CcCC---CCCchHHHHHHHHHHHH
Confidence 66553 23344589999999999999999998776421 1111 34556777788888875
No 33
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=99.46 E-value=1e-12 Score=137.37 Aligned_cols=203 Identities=17% Similarity=0.241 Sum_probs=136.9
Q ss_pred CcEEEecCCCCCHHHHHHHhc--cccCccCCeeeccceE-EechhhhhhhccCC-----ceEEEEEcCCCceEEEEee--
Q 037470 126 HPMLLAEPSSNTQQQRESSAF--SFWVCVCGILVFCPVI-EFDALVLTSFALGR-----ATSLVVDCGGGSTTVAPVH-- 195 (445)
Q Consensus 126 ~~vll~ep~~~~~~~r~~~~e--E~~~~~~~~~~~~p~v-~~~~~~la~~~~g~-----~tglVVDiG~~~t~v~pV~-- 195 (445)
..++||.|.+++..+|+.+.+ +..| +..+ ++++|.+|++++|. ..-+|+|+|+++++|+.+.
T Consensus 142 ~~aVITVPa~f~~~qR~a~~~Aa~~AG--------l~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~~~ 213 (595)
T PRK01433 142 TKAVITVPAHFNDAARGEVMLAAKIAG--------FEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQ 213 (595)
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHcC--------CCEEEEecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEEEEe
Confidence 469999999999999999999 8889 9999 99999999999874 3569999999999988775
Q ss_pred ccee-cCccceEecccHHHHHHHHHHHHHhcCCcccCccccccccCCCCCcceeccCCCCCchhHHhHhHHHHHHHHhhc
Q 037470 196 DGYV-LQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRYSFKRKENRPGEFQIVDLDFPNTTESYKLYCQRVIASDIKEC 274 (445)
Q Consensus 196 ~G~~-~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~iKe~ 274 (445)
+|.. +..+.....+||.+++..|.+++.++. ... .. ......+++.|+.
T Consensus 214 ~~~~~V~at~gd~~lGG~d~D~~l~~~~~~~~-~~~--------------------------~~---~~~~~~~ekaK~~ 263 (595)
T PRK01433 214 EGIFQVIATNGDNMLGGNDIDVVITQYLCNKF-DLP--------------------------NS---IDTLQLAKKAKET 263 (595)
T ss_pred CCeEEEEEEcCCcccChHHHHHHHHHHHHHhc-CCC--------------------------CC---HHHHHHHHHHHHh
Confidence 5532 111222357999999999999887542 100 00 1122357788876
Q ss_pred ceecCCCcCCccccCCCCCceeECCCCceEeeCcccc-cccccccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHhCC
Q 037470 275 VCRAPDTPYDESAYSNIPMTPYELPDGQVIEIGADRF-KTPDVLFNPSLVQTIPGMENFAENIPFRGLPQMVIDSINKCD 353 (445)
Q Consensus 275 ~~~v~~~~~~~~~~~~~~~~~~~lpdg~~i~l~~er~-~~~E~lF~p~~~~~~~~~~~~~~~~~~~~L~~~I~~~i~~~~ 353 (445)
+..-. .+. ...+.+..+.| ...+.+| ..+.+.|.+++....
T Consensus 264 LS~~~---------------~~~---~~~~~itr~efe~l~~~l~--------------------~~~~~~i~~~L~~a~ 305 (595)
T PRK01433 264 LTYKD---------------SFN---NDNISINKQTLEQLILPLV--------------------ERTINIAQECLEQAG 305 (595)
T ss_pred cCCCc---------------ccc---cceEEEcHHHHHHHHHHHH--------------------HHHHHHHHHHHhhcC
Confidence 53211 011 11455655544 1222222 145566666666554
Q ss_pred HHhHHHHhcCccccCCCCchhhHHHHHHHHHhhhCCCCceEEEEecCCCCCccceeEeeeEEeecc
Q 037470 354 VDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVVSSGNATERRFSVWIGGSILASL 419 (445)
Q Consensus 354 ~d~r~~L~~nIvLtGG~s~i~Gl~~RL~~eL~~~~p~~~~v~v~~~~~~~~~~~~~W~Gasilasl 419 (445)
..+ ...|+|+||+|.+|.+.++|.+.+.. ++.. ..+|..++-.||++.|..
T Consensus 306 ---~~~-Id~ViLvGGssriP~v~~~l~~~f~~--------~~~~---~~npdeaVA~GAAi~a~~ 356 (595)
T PRK01433 306 ---NPN-IDGVILVGGATRIPLIKDELYKAFKV--------DILS---DIDPDKAVVWGAALQAEN 356 (595)
T ss_pred ---ccc-CcEEEEECCcccChhHHHHHHHHhCC--------Ccee---cCCchHHHHHHHHHHHHH
Confidence 112 48899999999999999999877632 2222 355667888888888763
No 34
>PRK13410 molecular chaperone DnaK; Provisional
Probab=99.45 E-value=9.2e-13 Score=139.45 Aligned_cols=224 Identities=17% Similarity=0.226 Sum_probs=135.1
Q ss_pred CcEEEecCCCCCHHHHHHHhc--cccCccCCeeeccceE-EechhhhhhhccCC-----ceEEEEEcCCCceEEEEee--
Q 037470 126 HPMLLAEPSSNTQQQRESSAF--SFWVCVCGILVFCPVI-EFDALVLTSFALGR-----ATSLVVDCGGGSTTVAPVH-- 195 (445)
Q Consensus 126 ~~vll~ep~~~~~~~r~~~~e--E~~~~~~~~~~~~p~v-~~~~~~la~~~~g~-----~tglVVDiG~~~t~v~pV~-- 195 (445)
..++||.|.+++..+|+.+.+ +..| +..+ ++++|.+|++++|. .+-+|+|+|+++++|+.+.
T Consensus 136 ~~~VITVPa~f~~~qR~a~~~Aa~~AG--------l~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~~ 207 (668)
T PRK13410 136 TGAVITVPAYFNDSQRQATRDAGRIAG--------LEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEVG 207 (668)
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHcC--------CCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEEEc
Confidence 469999999999999999888 8889 9999 99999999998874 4689999999999998766
Q ss_pred ccee-cCccceEecccHHHHHHHHHHHHHhcCCcccCccccccccCCCCCcceeccCCCCCchhHHhHhHHHHHHHHhhc
Q 037470 196 DGYV-LQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRYSFKRKENRPGEFQIVDLDFPNTTESYKLYCQRVIASDIKEC 274 (445)
Q Consensus 196 ~G~~-~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~iKe~ 274 (445)
+|.. +..+.....+||.++++.|.+++.++...- +.. ++......+ ..-...++++|+.
T Consensus 208 ~g~~~V~at~gd~~lGG~dfD~~l~~~l~~~f~~~---~~~---------------d~~~~~~a~--~rL~~~aEkaK~~ 267 (668)
T PRK13410 208 NGVFEVKATSGDTQLGGNDFDKRIVDWLAEQFLEK---EGI---------------DLRRDRQAL--QRLTEAAEKAKIE 267 (668)
T ss_pred CCeEEEEEeecCCCCChhHHHHHHHHHHHHHHHhh---hCC---------------CcccCHHHH--HHHHHHHHHHHHh
Confidence 4432 222223457999999999998876532100 000 000000111 1123467888887
Q ss_pred ceecCCCcCCccccCCCCCceeECC--CC---ceEeeCccccc-ccccccCCCCCCCCCCCCCccCCCCCCCHHHHHHHH
Q 037470 275 VCRAPDTPYDESAYSNIPMTPYELP--DG---QVIEIGADRFK-TPDVLFNPSLVQTIPGMENFAENIPFRGLPQMVIDS 348 (445)
Q Consensus 275 ~~~v~~~~~~~~~~~~~~~~~~~lp--dg---~~i~l~~er~~-~~E~lF~p~~~~~~~~~~~~~~~~~~~~L~~~I~~~ 348 (445)
+......... ..+... +| ..+.+..+.|. ..+.++ ..+.+.|.++
T Consensus 268 LS~~~~~~i~---------i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~--------------------~r~~~~i~~~ 318 (668)
T PRK13410 268 LSGVSVTDIS---------LPFITATEDGPKHIETRLDRKQFESLCGDLL--------------------DRLLRPVKRA 318 (668)
T ss_pred cCCCCceEEE---------EeeeecCCCCCeeEEEEECHHHHHHHHHHHH--------------------HHHHHHHHHH
Confidence 6432211000 011111 11 12334433331 112221 1355555566
Q ss_pred HHhCCHHhHHHHhcCccccCCCCchhhHHHHHHHHHhhhCCCCceEEEEecCCCCCccceeEeeeEEeecc
Q 037470 349 INKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVVSSGNATERRFSVWIGGSILASL 419 (445)
Q Consensus 349 i~~~~~d~r~~L~~nIvLtGG~s~i~Gl~~RL~~eL~~~~p~~~~v~v~~~~~~~~~~~~~W~Gasilasl 419 (445)
+.... +...-...|+|+||+|.+|.+.+.|.+.+... +.. ..+|..++-+||++.|.+
T Consensus 319 L~~ag--~~~~dId~VvLVGGssRiP~V~~~l~~~fg~~--------~~~---~~npdeaVA~GAAi~aa~ 376 (668)
T PRK13410 319 LKDAG--LSPEDIDEVVLVGGSTRMPMVQQLVRTLIPRE--------PNQ---NVNPDEVVAVGAAIQAGI 376 (668)
T ss_pred HHHcC--CChhhCcEEEEECCccccHHHHHHHHHHcCCC--------ccc---CCCCchHHHHhHHHHHHh
Confidence 65432 22234478999999999999999998765321 111 244556777787777654
No 35
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=99.44 E-value=1e-12 Score=138.47 Aligned_cols=234 Identities=17% Similarity=0.187 Sum_probs=142.2
Q ss_pred HHHHHHHHHHhc---cccCCCCCCCcEEEecCCCCCHHHHHHHhc--cccCccCCeeeccceE-EechhhhhhhccCC--
Q 037470 105 DIVDSIWDHAFR---ECLLIDPKEHPMLLAEPSSNTQQQRESSAF--SFWVCVCGILVFCPVI-EFDALVLTSFALGR-- 176 (445)
Q Consensus 105 d~~e~i~~~~~~---~~L~~~~~~~~vll~ep~~~~~~~r~~~~e--E~~~~~~~~~~~~p~v-~~~~~~la~~~~g~-- 176 (445)
+....+++++.. ..++. .-..++||.|.+++..+|+.+.+ +..| +..+ ++++|.+|++++|.
T Consensus 128 ei~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qR~a~~~Aa~~AG--------l~v~~li~EPtAAAlay~~~~ 197 (616)
T PRK05183 128 EVSAEILKALRQRAEETLGG--ELDGAVITVPAYFDDAQRQATKDAARLAG--------LNVLRLLNEPTAAAIAYGLDS 197 (616)
T ss_pred HHHHHHHHHHHHHHHHHhCC--CcceEEEEECCCCCHHHHHHHHHHHHHcC--------CCeEEEecchHHHHHHhhccc
Confidence 344445555542 33432 23469999999999999999988 9999 9999 99999999987764
Q ss_pred ---ceEEEEEcCCCceEEEEee--ccee-cCccceEecccHHHHHHHHHHHHHhcCCcccCccccccccCCCCCcceecc
Q 037470 177 ---ATSLVVDCGGGSTTVAPVH--DGYV-LQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRYSFKRKENRPGEFQIVDL 250 (445)
Q Consensus 177 ---~tglVVDiG~~~t~v~pV~--~G~~-~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 250 (445)
..-+|+|+|+++++|+.+. +|.. +..+.....+||.++|+.|.+++.++.- ..+.
T Consensus 198 ~~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~~~~~~~~-~~~~------------------ 258 (616)
T PRK05183 198 GQEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWILEQAG-LSPR------------------ 258 (616)
T ss_pred CCCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHHHHHHHcC-CCcC------------------
Confidence 3578999999999998775 4432 1222233679999999999998866421 1000
Q ss_pred CCCCCchhHHhHhHHHHHHHHhhcceecCCCcCCccccCCCCCceeECCCCceEeeCcccc-cccccccCCCCCCCCCCC
Q 037470 251 DFPNTTESYKLYCQRVIASDIKECVCRAPDTPYDESAYSNIPMTPYELPDGQVIEIGADRF-KTPDVLFNPSLVQTIPGM 329 (445)
Q Consensus 251 ~~~~~~~s~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~lpdg~~i~l~~er~-~~~E~lF~p~~~~~~~~~ 329 (445)
...... ..-...+++.|+.+.... .....+++.. -.+..+.| ...+.++
T Consensus 259 ---~~~~~~--~~L~~~ae~aK~~LS~~~-------------~~~i~i~~~~-~~itr~efe~l~~~l~----------- 308 (616)
T PRK05183 259 ---LDPEDQ--RLLLDAARAAKEALSDAD-------------SVEVSVALWQ-GEITREQFNALIAPLV----------- 308 (616)
T ss_pred ---CCHHHH--HHHHHHHHHHHHhcCCCc-------------eEEEEEecCC-CeEcHHHHHHHHHHHH-----------
Confidence 000001 112345678887764211 1112222100 01322222 1111111
Q ss_pred CCccCCCCCCCHHHHHHHHHHhCCHHhHHHHhcCccccCCCCchhhHHHHHHHHHhhhCCCCceEEEEecCCCCCcccee
Q 037470 330 ENFAENIPFRGLPQMVIDSINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVVSSGNATERRFSV 409 (445)
Q Consensus 330 ~~~~~~~~~~~L~~~I~~~i~~~~~d~r~~L~~nIvLtGG~s~i~Gl~~RL~~eL~~~~p~~~~v~v~~~~~~~~~~~~~ 409 (445)
..+.+.|.+++..... ...-...|+|+||+|.+|.+.++|.+.+... +.. ..+|..++
T Consensus 309 ---------~~~~~~i~~~L~~a~~--~~~~i~~ViLvGGssriP~v~~~l~~~fg~~--------~~~---~~npdeaV 366 (616)
T PRK05183 309 ---------KRTLLACRRALRDAGV--EADEVKEVVMVGGSTRVPLVREAVGEFFGRT--------PLT---SIDPDKVV 366 (616)
T ss_pred ---------HHHHHHHHHHHHHcCC--CcccCCEEEEECCcccChHHHHHHHHHhccC--------cCc---CCCchHHH
Confidence 1345555555555422 1122478999999999999999998776421 112 35566788
Q ss_pred EeeeEEeecc
Q 037470 410 WIGGSILASL 419 (445)
Q Consensus 410 W~Gasilasl 419 (445)
-.||++.|..
T Consensus 367 A~GAAi~a~~ 376 (616)
T PRK05183 367 AIGAAIQADI 376 (616)
T ss_pred HHHHHHHHHH
Confidence 8898888763
No 36
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=99.44 E-value=7e-13 Score=139.77 Aligned_cols=223 Identities=17% Similarity=0.230 Sum_probs=139.4
Q ss_pred CcEEEecCCCCCHHHHHHHhc--cccCccCCeeeccceE-EechhhhhhhccCC-----ceEEEEEcCCCceEEEEee--
Q 037470 126 HPMLLAEPSSNTQQQRESSAF--SFWVCVCGILVFCPVI-EFDALVLTSFALGR-----ATSLVVDCGGGSTTVAPVH-- 195 (445)
Q Consensus 126 ~~vll~ep~~~~~~~r~~~~e--E~~~~~~~~~~~~p~v-~~~~~~la~~~~g~-----~tglVVDiG~~~t~v~pV~-- 195 (445)
..++||.|.+++..+|+.+.+ +..| +..+ ++++|.+|++++|. ..-+|+|+|+++++|+.+.
T Consensus 161 ~~aVITVPayF~~~qR~at~~Aa~~AG--------l~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~ 232 (657)
T PTZ00186 161 SNAVVTCPAYFNDAQRQATKDAGTIAG--------LNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIA 232 (657)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHHcC--------CCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEe
Confidence 469999999999999999988 8889 9999 99999999988874 4689999999999998876
Q ss_pred cceec-CccceEecccHHHHHHHHHHHHHhcCCcccCccccccccCCCCCcceeccCCCCCchhHHhHhHHHHHHHHhhc
Q 037470 196 DGYVL-QKGVTTSPIGGEFLTNCLMKSLESKGITIKPRYSFKRKENRPGEFQIVDLDFPNTTESYKLYCQRVIASDIKEC 274 (445)
Q Consensus 196 ~G~~~-~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~iKe~ 274 (445)
+|..- ..+.....+||.++|+.|.+++.++-..- +.. +........ ..-...++++|+.
T Consensus 233 ~g~~~V~at~Gd~~LGG~DfD~~l~~~~~~~f~~~---~~~---------------d~~~~~~~~--~rL~~~aEkaK~~ 292 (657)
T PTZ00186 233 GGVFEVKATNGDTHLGGEDFDLALSDYILEEFRKT---SGI---------------DLSKERMAL--QRVREAAEKAKCE 292 (657)
T ss_pred CCEEEEEEecCCCCCCchhHHHHHHHHHHHHHhhh---cCC---------------CcccCHHHH--HHHHHHHHHHHHH
Confidence 66442 22223468999999999988876532100 000 000000011 1223567888888
Q ss_pred ceecCCCcCCccccCCCCCceeECC--CC---ceEeeCccccc-ccccccCCCCCCCCCCCCCccCCCCCCCHHHHHHHH
Q 037470 275 VCRAPDTPYDESAYSNIPMTPYELP--DG---QVIEIGADRFK-TPDVLFNPSLVQTIPGMENFAENIPFRGLPQMVIDS 348 (445)
Q Consensus 275 ~~~v~~~~~~~~~~~~~~~~~~~lp--dg---~~i~l~~er~~-~~E~lF~p~~~~~~~~~~~~~~~~~~~~L~~~I~~~ 348 (445)
+......... ..+... || ..+.+..+.|. ..+.||. .+.+.+.++
T Consensus 293 LS~~~~~~i~---------i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~--------------------r~~~~v~~~ 343 (657)
T PTZ00186 293 LSSAMETEVN---------LPFITANADGAQHIQMHISRSKFEGITQRLIE--------------------RSIAPCKQC 343 (657)
T ss_pred hCCCCceEEE---------EeeeccCCCCCcceEEEecHHHHHHHHHHHHH--------------------HHHHHHHHH
Confidence 7543221100 011111 11 23445544431 2222221 344455555
Q ss_pred HHhCCHHhHHHHhcCccccCCCCchhhHHHHHHHHHhhhCCCCceEEEEecCCCCCccceeEeeeEEeec
Q 037470 349 INKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVVSSGNATERRFSVWIGGSILAS 418 (445)
Q Consensus 349 i~~~~~d~r~~L~~nIvLtGG~s~i~Gl~~RL~~eL~~~~p~~~~v~v~~~~~~~~~~~~~W~Gasilas 418 (445)
+.....+ ..-...|+|+||+|.+|.+.+.|.+.+.... .. ..+|..++-+||+++|.
T Consensus 344 L~~a~~~--~~dId~VvLVGGssriP~V~~~l~~~fg~~~--------~~---~~nPdeaVA~GAAi~a~ 400 (657)
T PTZ00186 344 MKDAGVE--LKEINDVVLVGGMTRMPKVVEEVKKFFQKDP--------FR---GVNPDEAVALGAATLGG 400 (657)
T ss_pred HHHcCCC--hhhCCEEEEECCcccChHHHHHHHHHhCCCc--------cc---cCCCchHHHHhHHHHHH
Confidence 5544322 2334789999999999999999998774311 11 35566788888888876
No 37
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=99.42 E-value=1.8e-12 Score=137.51 Aligned_cols=222 Identities=17% Similarity=0.228 Sum_probs=140.4
Q ss_pred CcEEEecCCCCCHHHHHHHhc--cccCccCCeeeccceE-EechhhhhhhccCC-------ceEEEEEcCCCceEEEEee
Q 037470 126 HPMLLAEPSSNTQQQRESSAF--SFWVCVCGILVFCPVI-EFDALVLTSFALGR-------ATSLVVDCGGGSTTVAPVH 195 (445)
Q Consensus 126 ~~vll~ep~~~~~~~r~~~~e--E~~~~~~~~~~~~p~v-~~~~~~la~~~~g~-------~tglVVDiG~~~t~v~pV~ 195 (445)
..++||.|.+++..+|+.+.+ +..| +..+ ++++|.+|++++|. .+-+|+|+|+++++|+.+.
T Consensus 141 ~~~VItVPa~f~~~qR~a~~~Aa~~AG--------l~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~ 212 (653)
T PTZ00009 141 KDAVVTVPAYFNDSQRQATKDAGTIAG--------LNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLT 212 (653)
T ss_pred ceeEEEeCCCCCHHHHHHHHHHHHHcC--------CceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEE
Confidence 569999999999999999998 8889 9999 99999999988753 4689999999999998765
Q ss_pred --cceecC-ccceEecccHHHHHHHHHHHHHhcCCcccCccccccccCCCCCcceeccCCCCCchhHHhHhHHHHHHHHh
Q 037470 196 --DGYVLQ-KGVTTSPIGGEFLTNCLMKSLESKGITIKPRYSFKRKENRPGEFQIVDLDFPNTTESYKLYCQRVIASDIK 272 (445)
Q Consensus 196 --~G~~~~-~~~~~~~~GG~~lt~~l~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~iK 272 (445)
+|..-- .+.....+||.++|..|.+++.++...... ..++......+ ..-...++++|
T Consensus 213 ~~~~~~~v~a~~gd~~lGG~d~D~~l~~~~~~~~~~~~~-----------------~~~~~~~~~~~--~~L~~~aEkaK 273 (653)
T PTZ00009 213 IEDGIFEVKATAGDTHLGGEDFDNRLVEFCVQDFKRKNR-----------------GKDLSSNQRAL--RRLRTQCERAK 273 (653)
T ss_pred EeCCeEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhcc-----------------CCCCccCHHHH--HHHHHHHHHHH
Confidence 454321 222235899999999999887653210000 00000000111 12234678888
Q ss_pred hcceecCCCcCCccccCCCCCceeEC---CCC--ceEeeCccccc-ccccccCCCCCCCCCCCCCccCCCCCCCHHHHHH
Q 037470 273 ECVCRAPDTPYDESAYSNIPMTPYEL---PDG--QVIEIGADRFK-TPDVLFNPSLVQTIPGMENFAENIPFRGLPQMVI 346 (445)
Q Consensus 273 e~~~~v~~~~~~~~~~~~~~~~~~~l---pdg--~~i~l~~er~~-~~E~lF~p~~~~~~~~~~~~~~~~~~~~L~~~I~ 346 (445)
+.++.... ..+.+ -++ ..+.+..+.|. ..+.+|. .+.+.|.
T Consensus 274 ~~LS~~~~-------------~~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~--------------------~~~~~i~ 320 (653)
T PTZ00009 274 RTLSSSTQ-------------ATIEIDSLFEGIDYNVTISRARFEELCGDYFR--------------------NTLQPVE 320 (653)
T ss_pred HhCCCCce-------------EEEEEEeccCCceEEEEECHHHHHHHHHHHHH--------------------HHHHHHH
Confidence 87653211 11111 122 23445554442 2222221 3555666
Q ss_pred HHHHhCCHHhHHHHhcCccccCCCCchhhHHHHHHHHHhhhCCCCceEEEEecCCCCCccceeEeeeEEeecc
Q 037470 347 DSINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVVSSGNATERRFSVWIGGSILASL 419 (445)
Q Consensus 347 ~~i~~~~~d~r~~L~~nIvLtGG~s~i~Gl~~RL~~eL~~~~p~~~~v~v~~~~~~~~~~~~~W~Gasilasl 419 (445)
+++.....+. .-...|+|+||+|.+|.+.++|.+.+... ++.. ..+|..++-.||++.|..
T Consensus 321 ~~L~~a~~~~--~~i~~ViLvGGssriP~v~~~i~~~f~~~-------~~~~---~~npdeaVA~GAa~~aa~ 381 (653)
T PTZ00009 321 KVLKDAGMDK--RSVHEVVLVGGSTRIPKVQSLIKDFFNGK-------EPCK---SINPDEAVAYGAAVQAAI 381 (653)
T ss_pred HHHHHcCCCH--HHCcEEEEECCCCCChhHHHHHHHHhCCC-------CCCC---CCCcchHHhhhhhhhHHH
Confidence 7776654332 33588999999999999999998766421 1111 345667888898888753
No 38
>PRK11678 putative chaperone; Provisional
Probab=99.22 E-value=2.4e-10 Score=115.62 Aligned_cols=84 Identities=21% Similarity=0.206 Sum_probs=64.8
Q ss_pred CcEEEecCCCCC-----HHHHHH---Hhc--cccCccCCeeeccceE-EechhhhhhhccCC-----ceEEEEEcCCCce
Q 037470 126 HPMLLAEPSSNT-----QQQRES---SAF--SFWVCVCGILVFCPVI-EFDALVLTSFALGR-----ATSLVVDCGGGST 189 (445)
Q Consensus 126 ~~vll~ep~~~~-----~~~r~~---~~e--E~~~~~~~~~~~~p~v-~~~~~~la~~~~g~-----~tglVVDiG~~~t 189 (445)
..++|+.|.... ..+|+. +.+ +..| ++.+ ++++|.+|++++|. ..-+|+|+|++++
T Consensus 150 ~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG--------~~~v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~ 221 (450)
T PRK11678 150 TQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAG--------FKDVEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTT 221 (450)
T ss_pred CcEEEEECCccccCCcchhHHHHHHHHHHHHHHcC--------CCEEEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeE
Confidence 569999999876 555543 455 8889 9999 99999999999873 5789999999999
Q ss_pred EEEEeecc-----------eecCccceEecccHHHHHHHHH
Q 037470 190 TVAPVHDG-----------YVLQKGVTTSPIGGEFLTNCLM 219 (445)
Q Consensus 190 ~v~pV~~G-----------~~~~~~~~~~~~GG~~lt~~l~ 219 (445)
+++-|-=+ .++.++- ..+||.++|..|.
T Consensus 222 D~Svv~~~~~~~~~~~r~~~vla~~G--~~lGG~DfD~~L~ 260 (450)
T PRK11678 222 DCSMLLMGPSWRGRADRSASLLGHSG--QRIGGNDLDIALA 260 (450)
T ss_pred EEEEEEecCcccccCCcceeEEecCC--CCCChHHHHHHHH
Confidence 99877521 1222221 3699999999986
No 39
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.17 E-value=5.6e-11 Score=118.38 Aligned_cols=171 Identities=20% Similarity=0.181 Sum_probs=110.5
Q ss_pred CHHHHHHHhc--cccCccCCeeeccceE-EechhhhhhhccCC-----ceEEEEEcCCCceEEEEeecceecCccceEec
Q 037470 137 TQQQRESSAF--SFWVCVCGILVFCPVI-EFDALVLTSFALGR-----ATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSP 208 (445)
Q Consensus 137 ~~~~r~~~~e--E~~~~~~~~~~~~p~v-~~~~~~la~~~~g~-----~tglVVDiG~~~t~v~pV~~G~~~~~~~~~~~ 208 (445)
++...+.+.+ +..| +.-+ +..+|+++++++.. ...+|||+|+++|+++.+.+|.+.. .+.++
T Consensus 156 ~~~~v~~~~~~~~~aG--------l~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~~--~~~i~ 225 (371)
T TIGR01174 156 SSTILRNLVKCVERCG--------LEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRY--TKVIP 225 (371)
T ss_pred EHHHHHHHHHHHHHcC--------CCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEEE--Eeeec
Confidence 4444555555 7778 7788 88899999887643 3579999999999999999998776 36799
Q ss_pred ccHHHHHHHHHHHHHhcCCcccCccccccccCCCCCcceeccCCCCCchhHHhHhHHHHHHHHhhcceecCCCcCCcccc
Q 037470 209 IGGEFLTNCLMKSLESKGITIKPRYSFKRKENRPGEFQIVDLDFPNTTESYKLYCQRVIASDIKECVCRAPDTPYDESAY 288 (445)
Q Consensus 209 ~GG~~lt~~l~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~ 288 (445)
+||+++|+.+.+.|. ...+.++++|..++.........
T Consensus 226 ~GG~~it~~i~~~l~---------------------------------------~~~~~AE~lK~~~~~~~~~~~~~--- 263 (371)
T TIGR01174 226 IGGNHITKDIAKALR---------------------------------------TPLEEAERIKIKYGCASIPLEGP--- 263 (371)
T ss_pred chHHHHHHHHHHHhC---------------------------------------CCHHHHHHHHHHeeEecccCCCC---
Confidence 999999999887652 23457899999988764321110
Q ss_pred CCCCCceeECC---CCceEeeCccccc-ccccccCCCCCCCCCCCCCccCCCCCCCHHHHHH-HHHHhCCHHhHHHHhcC
Q 037470 289 SNIPMTPYELP---DGQVIEIGADRFK-TPDVLFNPSLVQTIPGMENFAENIPFRGLPQMVI-DSINKCDVDIRRELFSS 363 (445)
Q Consensus 289 ~~~~~~~~~lp---dg~~i~l~~er~~-~~E~lF~p~~~~~~~~~~~~~~~~~~~~L~~~I~-~~i~~~~~d~r~~L~~n 363 (445)
...+.++ ++....+..+.+. +.+.+ ...+.+.|. +.+++...+ ..+-+.
T Consensus 264 ----~~~i~~~~~~~~~~~~is~~~l~~ii~~~--------------------~~ei~~~i~~~~L~~~~~~--~~i~~g 317 (371)
T TIGR01174 264 ----DENIEIPSVGERPPRSLSRKELAEIIEAR--------------------AEEILEIVKQKELRKSGFK--EELNGG 317 (371)
T ss_pred ----CCEEEeccCCCCCCeEEcHHHHHHHHHHH--------------------HHHHHHHHHHHHHHhcCCc--ccCCCE
Confidence 1112222 1122222221110 00111 113555554 566554433 233334
Q ss_pred ccccCCCCchhhHHHHHHHHHh
Q 037470 364 ILLAGGTASMQQLKERLEKDLL 385 (445)
Q Consensus 364 IvLtGG~s~i~Gl~~RL~~eL~ 385 (445)
|+||||+|++||+.+++.+.+.
T Consensus 318 IvLtGG~S~ipgi~~~l~~~~~ 339 (371)
T TIGR01174 318 IVLTGGGAQLEGIVELAEKVFD 339 (371)
T ss_pred EEEeChHHcccCHHHHHHHHhC
Confidence 9999999999999999999884
No 40
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.14 E-value=6e-11 Score=119.71 Aligned_cols=191 Identities=21% Similarity=0.231 Sum_probs=123.6
Q ss_pred cccCccCCeeeccceE-EechhhhhhhccCC-----ceEEEEEcCCCceEEEEeecceecCccceEecccHHHHHHHHHH
Q 037470 147 SFWVCVCGILVFCPVI-EFDALVLTSFALGR-----ATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMK 220 (445)
Q Consensus 147 E~~~~~~~~~~~~p~v-~~~~~~la~~~~g~-----~tglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~lt~~l~~ 220 (445)
+..| +.-. +..+|++++++... ...+|||||+++|+++.+.+|.++.. ..+++||+++|+.|..
T Consensus 176 ~~aG--------l~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~~~--~~i~~GG~~it~dIa~ 245 (420)
T PRK09472 176 ERCG--------LKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALRHT--KVIPYAGNVVTSDIAY 245 (420)
T ss_pred HHcC--------CeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEEEE--eeeechHHHHHHHHHH
Confidence 6677 7778 88899999998753 35899999999999999999998865 7799999999999987
Q ss_pred HHHhcCCcccCccccccccCCCCCcceeccCCCCCchhHHhHhHHHHHHHHhhcceecCCCcCCccccCCCCCceeECCC
Q 037470 221 SLESKGITIKPRYSFKRKENRPGEFQIVDLDFPNTTESYKLYCQRVIASDIKECVCRAPDTPYDESAYSNIPMTPYELPD 300 (445)
Q Consensus 221 ~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~lpd 300 (445)
.|. ...+.++++|.+++.......+.. ..+.+|+
T Consensus 246 ~l~---------------------------------------i~~~~AE~lK~~~g~~~~~~~~~~-------~~i~v~~ 279 (420)
T PRK09472 246 AFG---------------------------------------TPPSDAEAIKVRHGCALGSIVGKD-------ESVEVPS 279 (420)
T ss_pred HhC---------------------------------------cCHHHHHHHHHhcceeccccCCCC-------ceeEecC
Confidence 662 233578999988765433221111 1122221
Q ss_pred --C-ceEeeCcccccccccccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHhCCHHhHHH-----HhcCccccCCCCc
Q 037470 301 --G-QVIEIGADRFKTPDVLFNPSLVQTIPGMENFAENIPFRGLPQMVIDSINKCDVDIRRE-----LFSSILLAGGTAS 372 (445)
Q Consensus 301 --g-~~i~l~~er~~~~E~lF~p~~~~~~~~~~~~~~~~~~~~L~~~I~~~i~~~~~d~r~~-----L~~nIvLtGG~s~ 372 (445)
+ ....+... ...|++.. . ...|.++|.+++..++.+++.. +.+.||||||+|+
T Consensus 280 ~~~~~~~~i~~~--~l~~ii~~-r----------------~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~ 340 (420)
T PRK09472 280 VGGRPPRSLQRQ--TLAEVIEP-R----------------YTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQ 340 (420)
T ss_pred CCCCCCeEEcHH--HHHHHHHH-H----------------HHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhc
Confidence 1 11111111 11111110 0 1235556777777776665543 4467999999999
Q ss_pred hhhHHHHHHHHHhhhCCCCceEEEEecCC-------CCCccceeEeeeEEeec
Q 037470 373 MQQLKERLEKDLLEESPQAARVKVVSSGN-------ATERRFSVWIGGSILAS 418 (445)
Q Consensus 373 i~Gl~~RL~~eL~~~~p~~~~v~v~~~~~-------~~~~~~~~W~Gasilas 418 (445)
+||+.+.+++-+.. ++++..|.. ..+|.|++=+|..+++.
T Consensus 341 lpgi~e~~~~~f~~------~vri~~P~~~~g~~~~~~~P~~ata~Gl~~~~~ 387 (420)
T PRK09472 341 IEGLAACAQRVFHT------QVRIGAPLNITGLTDYAQEPYYSTAVGLLHYGK 387 (420)
T ss_pred cccHHHHHHHHhCC------CeEEeCCcccCCChhhcCCcHHHHHHHHHHHhh
Confidence 99999999988742 345443211 13567777777766654
No 41
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2.1e-08 Score=104.65 Aligned_cols=93 Identities=23% Similarity=0.297 Sum_probs=78.4
Q ss_pred CCcEEEecCCCCCHHHHHHHhc--cccCccCCeeeccceE-EechhhhhhhccCC-----ceEEEEEcCCCceEEEEee-
Q 037470 125 EHPMLLAEPSSNTQQQRESSAF--SFWVCVCGILVFCPVI-EFDALVLTSFALGR-----ATSLVVDCGGGSTTVAPVH- 195 (445)
Q Consensus 125 ~~~vll~ep~~~~~~~r~~~~e--E~~~~~~~~~~~~p~v-~~~~~~la~~~~g~-----~tglVVDiG~~~t~v~pV~- 195 (445)
-..++|+.|.+....+|+.+.+ +..| ++-+ ++++|.+|+|++|. ..-+|+|+|+++++|+-|-
T Consensus 120 v~~~VItVPayF~d~qR~at~~A~~iaG--------l~vlrlinEPtAAAlayg~~~~~~~~vlV~DlGGGTfDvSll~~ 191 (579)
T COG0443 120 VTDAVITVPAYFNDAQRQATKDAARIAG--------LNVLRLINEPTAAALAYGLDKGKEKTVLVYDLGGGTFDVSLLEI 191 (579)
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHHHcC--------CCeEEEecchHHHHHHhHhccCCCcEEEEEEcCCCCEEEEEEEE
Confidence 4679999999999999999988 8999 9999 99999999999985 5789999999999999887
Q ss_pred -ccee-cCccceEecccHHHHHHHHHHHHHhc
Q 037470 196 -DGYV-LQKGVTTSPIGGEFLTNCLMKSLESK 225 (445)
Q Consensus 196 -~G~~-~~~~~~~~~~GG~~lt~~l~~~l~~~ 225 (445)
+|.. +..+.....+||++++..|...+..+
T Consensus 192 ~~g~~ev~at~gd~~LGGddfD~~l~~~~~~~ 223 (579)
T COG0443 192 GDGVFEVLATGGDNHLGGDDFDNALIDYLVME 223 (579)
T ss_pred cCCEEEEeecCCCcccCchhHHHHHHHHHHHH
Confidence 3422 23344567899999999998887653
No 42
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=98.88 E-value=3.3e-09 Score=104.91 Aligned_cols=186 Identities=20% Similarity=0.253 Sum_probs=116.7
Q ss_pred cceE-EechhhhhhhccC-----CceEEEEEcCCCceEEEEeecceecCccceEecccHHHHHHHHHHHHHhcCCcccCc
Q 037470 159 CPVI-EFDALVLTSFALG-----RATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKSLESKGITIKPR 232 (445)
Q Consensus 159 ~p~v-~~~~~~la~~~~g-----~~tglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~p~ 232 (445)
+.-. +.-+|++++.+.= .-.+++||+|+++|+|+.+.+|.+... ..+|+||+++|+.|...|.
T Consensus 179 l~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~~~--~~ipvgG~~vT~DIa~~l~--------- 247 (418)
T COG0849 179 LKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALRYT--GVIPVGGDHVTKDIAKGLK--------- 247 (418)
T ss_pred CCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEEEE--eeEeeCccHHHHHHHHHhC---------
Confidence 6666 7778888887753 268999999999999999999999987 5699999999999999873
Q ss_pred cccccccCCCCCcceeccCCCCCchhHHhHhHHHHHHHHhhcceecCCCcCCccccCCCCCceeECCC--Cce-EeeCcc
Q 037470 233 YSFKRKENRPGEFQIVDLDFPNTTESYKLYCQRVIASDIKECVCRAPDTPYDESAYSNIPMTPYELPD--GQV-IEIGAD 309 (445)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~lpd--g~~-i~l~~e 309 (445)
.+.+.+|+||.+++.......+.+ ..++.|. +.. ..+.
T Consensus 248 ------------------------------t~~~~AE~iK~~~g~a~~~~~~~~-------~~i~v~~vg~~~~~~~t-- 288 (418)
T COG0849 248 ------------------------------TPFEEAERIKIKYGSALISLADDE-------ETIEVPSVGSDIPRQVT-- 288 (418)
T ss_pred ------------------------------CCHHHHHHHHHHcCccccCcCCCc-------ceEecccCCCcccchhh--
Confidence 345679999999876554332111 1111111 000 0110
Q ss_pred cccccccccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHhCCHHhHHHHhcCccccCCCCchhhHHHHHHHHHhhhCC
Q 037470 310 RFKTPDVLFNPSLVQTIPGMENFAENIPFRGLPQMVIDSINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESP 389 (445)
Q Consensus 310 r~~~~E~lF~p~~~~~~~~~~~~~~~~~~~~L~~~I~~~i~~~~~d~r~~L~~nIvLtGG~s~i~Gl~~RL~~eL~~~~p 389 (445)
+....+++-. ...-+-+++...|++.-.. ..+.+.|+||||++++||+.+-.++-+..
T Consensus 289 ~~~ls~II~a-----------------R~~Ei~~lV~~~l~~~g~~--~~~~~gvVlTGG~a~l~Gi~elA~~if~~--- 346 (418)
T COG0849 289 RSELSEIIEA-----------------RVEEILELVKAELRKSGLP--NHLPGGVVLTGGGAQLPGIVELAERIFGR--- 346 (418)
T ss_pred HHHHHHHHHh-----------------hHHHHHHHHHHHHHHcCcc--ccCCCeEEEECchhcCccHHHHHHHhcCC---
Confidence 0011111100 0123444555555554332 56679999999999999998766655532
Q ss_pred CCceEEEEecC-------CCCCccceeEeeeEEeecc
Q 037470 390 QAARVKVVSSG-------NATERRFSVWIGGSILASL 419 (445)
Q Consensus 390 ~~~~v~v~~~~-------~~~~~~~~~W~Gasilasl 419 (445)
++++-.|. ...+|.|++-+|.-.++..
T Consensus 347 ---~vRig~P~~~~Gl~d~~~~p~fs~avGl~~~~~~ 380 (418)
T COG0849 347 ---PVRLGVPLNIVGLTDIARNPAFSTAVGLLLYGAL 380 (418)
T ss_pred ---ceEeCCCccccCchhhccCchhhhhHHHHHHHhh
Confidence 23333320 0124678888887666653
No 43
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=98.87 E-value=1.5e-09 Score=115.29 Aligned_cols=225 Identities=21% Similarity=0.279 Sum_probs=135.7
Q ss_pred CcEEEecCCCCCHHHHHHHhc--cccCccCCeeeccceE-EechhhhhhhccCC------ceEEEEEcCCCceEEEEee-
Q 037470 126 HPMLLAEPSSNTQQQRESSAF--SFWVCVCGILVFCPVI-EFDALVLTSFALGR------ATSLVVDCGGGSTTVAPVH- 195 (445)
Q Consensus 126 ~~vll~ep~~~~~~~r~~~~e--E~~~~~~~~~~~~p~v-~~~~~~la~~~~g~------~tglVVDiG~~~t~v~pV~- 195 (445)
..++|+.|..++..+|+.+.+ +..| +..+ ++++|.||+++++. .+-+|+|+|+++++|+.+.
T Consensus 136 ~~~vitVPa~~~~~qr~~~~~Aa~~ag--------l~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~ 207 (602)
T PF00012_consen 136 TDVVITVPAYFTDEQRQALRDAAELAG--------LNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEF 207 (602)
T ss_dssp EEEEEEE-TT--HHHHHHHHHHHHHTT---------EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEE
T ss_pred ccceeeechhhhhhhhhcccccccccc--------cccceeecccccccccccccccccccceeccccccceEeeeehhc
Confidence 359999999999999999999 8889 8889 99999999877653 4789999999999988775
Q ss_pred -cceecC-ccceEecccHHHHHHHHHHHHHhcCCcccCccccccccCCCCCcceeccCCCCCchhHHhHhHHHHHHHHhh
Q 037470 196 -DGYVLQ-KGVTTSPIGGEFLTNCLMKSLESKGITIKPRYSFKRKENRPGEFQIVDLDFPNTTESYKLYCQRVIASDIKE 273 (445)
Q Consensus 196 -~G~~~~-~~~~~~~~GG~~lt~~l~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~iKe 273 (445)
+|.+-- .......+||.+++..|.+++.++.... +.. +.......+ ..-...++++|+
T Consensus 208 ~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~~~~~~~---~~~---------------d~~~~~~~~--~~L~~~~e~~K~ 267 (602)
T PF00012_consen 208 SNGQFEVLATAGDNNLGGRDFDEALAEYLLEKFKKK---YKI---------------DLRENPRAM--ARLLEAAEKAKE 267 (602)
T ss_dssp ETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHH---HSS----------------GTCSHHHH--HHHHHHHHHHHH
T ss_pred ccccccccccccccccccceecceeecccccccccc---ccc---------------ccccccccc--cccccccccccc
Confidence 554322 2234468999999999999886532100 000 000000111 122346788888
Q ss_pred cceecCCCcCCccccCCCCCceeECCCCc--eEeeCccccc-ccccccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHH
Q 037470 274 CVCRAPDTPYDESAYSNIPMTPYELPDGQ--VIEIGADRFK-TPDVLFNPSLVQTIPGMENFAENIPFRGLPQMVIDSIN 350 (445)
Q Consensus 274 ~~~~v~~~~~~~~~~~~~~~~~~~lpdg~--~i~l~~er~~-~~E~lF~p~~~~~~~~~~~~~~~~~~~~L~~~I~~~i~ 350 (445)
.+......... . ......++|. .+.+..+.|. ..+.+|+ .+.++|.+++.
T Consensus 268 ~Ls~~~~~~~~------~-~~~~~~~~~~~~~~~itr~~fe~l~~~~~~--------------------~~~~~i~~~l~ 320 (602)
T PF00012_consen 268 QLSSNDNTEIT------I-SIESLYDDGEDFSITITREEFEELCEPLLE--------------------RIIEPIEKALK 320 (602)
T ss_dssp HTTTSSSSEEE------E-EEEEEETTTEEEEEEEEHHHHHHHTHHHHH--------------------HTHHHHHHHHH
T ss_pred ccccccccccc------c-ccccccccccccccccccceeccccccccc--------------------ccccccccccc
Confidence 76432110000 0 0000111132 3444444432 2222221 46667777777
Q ss_pred hCCHHhHHHHhcCccccCCCCchhhHHHHHHHHHhhhCCCCceEEEEecCCCCCccceeEeeeEEeec
Q 037470 351 KCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVVSSGNATERRFSVWIGGSILAS 418 (445)
Q Consensus 351 ~~~~d~r~~L~~nIvLtGG~s~i~Gl~~RL~~eL~~~~p~~~~v~v~~~~~~~~~~~~~W~Gasilas 418 (445)
.+... ..=...|+|+||+|.+|-+.++|++.+.. .+.. ..+|..++-.||+++|.
T Consensus 321 ~~~~~--~~~i~~V~lvGG~sr~p~v~~~l~~~f~~--------~~~~---~~~p~~aVA~GAa~~a~ 375 (602)
T PF00012_consen 321 DAGLK--KEDIDSVLLVGGSSRIPYVQEALKELFGK--------KISK---SVNPDEAVARGAALYAA 375 (602)
T ss_dssp HTT----GGGESEEEEESGGGGSHHHHHHHHHHTTS--------EEB----SS-TTTHHHHHHHHHHH
T ss_pred ccccc--ccccceeEEecCcccchhhhhhhhhcccc--------cccc---ccccccccccccccchh
Confidence 65432 12237799999999999999888776641 2223 35667888899999886
No 44
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=98.77 E-value=3.4e-07 Score=89.95 Aligned_cols=67 Identities=15% Similarity=0.133 Sum_probs=57.0
Q ss_pred cceE-EechhhhhhhccCC-------------ceEEEEEcCCCceEEEEeecceecCccceEecccHHHHHHHHHHHHHh
Q 037470 159 CPVI-EFDALVLTSFALGR-------------ATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKSLES 224 (445)
Q Consensus 159 ~p~v-~~~~~~la~~~~g~-------------~tglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~ 224 (445)
+..+ +.+|++.++|.... ...+|||||+.+|.++.+.++.+.......++.|..++-+.+.+.+++
T Consensus 153 i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~ 232 (344)
T PRK13917 153 VKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTIDVYKRIASHISK 232 (344)
T ss_pred EEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCCCcEEEEEEeCcEEcccccccccchHHHHHHHHHHHHHh
Confidence 6778 99999999875422 246999999999999999999999987778999999999999999954
Q ss_pred c
Q 037470 225 K 225 (445)
Q Consensus 225 ~ 225 (445)
+
T Consensus 233 ~ 233 (344)
T PRK13917 233 K 233 (344)
T ss_pred h
Confidence 3
No 45
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=98.74 E-value=3.4e-08 Score=97.16 Aligned_cols=192 Identities=21% Similarity=0.194 Sum_probs=108.4
Q ss_pred CHHHHHHHHHHHhccccCCCCCC-----------------CcEEEecCCCCCHHHHHHHhc--cccCccCCeeeccceE-
Q 037470 103 DWDIVDSIWDHAFRECLLIDPKE-----------------HPMLLAEPSSNTQQQRESSAF--SFWVCVCGILVFCPVI- 162 (445)
Q Consensus 103 d~d~~e~i~~~~~~~~L~~~~~~-----------------~~vll~ep~~~~~~~r~~~~e--E~~~~~~~~~~~~p~v- 162 (445)
+.+.++..+++-..+++..+.++ ..|+++-- ++..-+..++ +..|.. ..++
T Consensus 86 ~~~el~~~I~~Ea~~~iP~~~~e~~~D~~vl~~~~~~~~~~~Vll~Aa---~k~~v~~~~~~~~~aGL~------~~~vD 156 (340)
T PF11104_consen 86 PEKELEEAIRWEAEQYIPFPLEEVVFDYQVLGESEDGEEKMEVLLVAA---PKEIVESYVELFEEAGLK------PVAVD 156 (340)
T ss_dssp -HHHHHHHHHHHHGGG-SS----EEEEEEESS-GS-TTSEEEEEEEEE---EHHHHHHHHHHHHHTT-E------EEEEE
T ss_pred CHHHHHHHHHHHHHhhCCCChhHeEEEEEEeccCCCCCCceEEEEEEE---cHHHHHHHHHHHHHcCCc------eEEEe
Confidence 44667777777666666554332 23444332 4455555555 555510 3334
Q ss_pred EechhhhhhhccC---------CceEEEEEcCCCceEEEEeecceecCccceEecccHHHHHHHHHHHHHhcCCcccCcc
Q 037470 163 EFDALVLTSFALG---------RATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRY 233 (445)
Q Consensus 163 ~~~~~~la~~~~g---------~~tglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~p~~ 233 (445)
+..-+++-+|... ..+-++||||++.|+++-+.+|.++.. +.+++||+++++.+.+.+.
T Consensus 157 v~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~~~f~--R~i~~G~~~l~~~i~~~~~---------- 224 (340)
T PF11104_consen 157 VEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQNGKPIFS--RSIPIGGNDLTEAIARELG---------- 224 (340)
T ss_dssp EHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEETTEEEEE--EEES-SHHHHHHHHHHHTT----------
T ss_pred ehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEECCEEEEE--EEEeeCHHHHHHHHHHhcC----------
Confidence 5555555555441 235689999999999999999999885 8899999999999987752
Q ss_pred ccccccCCCCCcceeccCCCCCchhHHhHhHHHHHHHHhhcceecCCCcCCccccCCCCCceeECCCCceEeeCcccccc
Q 037470 234 SFKRKENRPGEFQIVDLDFPNTTESYKLYCQRVIASDIKECVCRAPDTPYDESAYSNIPMTPYELPDGQVIEIGADRFKT 313 (445)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~lpdg~~i~l~~er~~~ 313 (445)
.+.+.++++|.... +|+. ....+
T Consensus 225 -----------------------------i~~~~Ae~~k~~~~---------------------l~~~-------~~~~~ 247 (340)
T PF11104_consen 225 -----------------------------IDFEEAEELKRSGG---------------------LPEE-------YDQDA 247 (340)
T ss_dssp -------------------------------HHHHHHHHHHT----------------------------------HHHH
T ss_pred -----------------------------CCHHHHHHHHhcCC---------------------CCcc-------hHHHH
Confidence 23345566665421 1110 00000
Q ss_pred cccccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHhCCHHhHHHHhcCccccCCCCchhhHHHHHHHHHhhhCCCCce
Q 037470 314 PDVLFNPSLVQTIPGMENFAENIPFRGLPQMVIDSINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAAR 393 (445)
Q Consensus 314 ~E~lF~p~~~~~~~~~~~~~~~~~~~~L~~~I~~~i~~~~~d~r~~L~~nIvLtGG~s~i~Gl~~RL~~eL~~~~p~~~~ 393 (445)
-+.+ ...|..-|.+++.-.-......-.+.|+||||+|.++||.+.|.++|. ..
T Consensus 248 l~~~--------------------~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~------~~ 301 (340)
T PF11104_consen 248 LRPF--------------------LEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELG------IP 301 (340)
T ss_dssp HHHH--------------------HHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHT------SE
T ss_pred HHHH--------------------HHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHC------Cc
Confidence 0000 124666677777655444444456889999999999999999999994 45
Q ss_pred EEEEe
Q 037470 394 VKVVS 398 (445)
Q Consensus 394 v~v~~ 398 (445)
+.+..
T Consensus 302 v~~~~ 306 (340)
T PF11104_consen 302 VEVIN 306 (340)
T ss_dssp EEE--
T ss_pred eEEcC
Confidence 66554
No 46
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=98.64 E-value=3e-07 Score=89.68 Aligned_cols=197 Identities=14% Similarity=0.025 Sum_probs=116.8
Q ss_pred EeCCCceeEeeecC-CCCC-CcccCcceeeecCCCcccccccccCCCccccCCCccCCcCCCCCcceEeccccccCcCCC
Q 037470 12 IDLGSHTCKAGYAG-EDAP-KAVFPSVVGAIDQMDIDDSANAERNSGSAIDSKNNVDSNKGKGKRKLYVGTQSLGFRRDH 89 (445)
Q Consensus 12 iD~Gs~~~k~G~ag-~~~P-~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~ 89 (445)
||+|-+++|+=+.+ +..+ +.+|||.++.-..... ...+ .+.....+........+++|+.+.... +
T Consensus 2 iDvGyg~~K~~~~~~~~~~~~~~fPS~~~~~~~~~~-~~~~---------~~~~~~~~~v~~~g~~y~VG~~a~~~~-~- 69 (320)
T TIGR03739 2 VDVGYGNTKFVSQVRGTDIRCASFPSVAPPSSRESP-AWPG---------GSEARKTVCVPVGGLFYEVGPDVSLAA-D- 69 (320)
T ss_pred ccccCCceEEEecCCCCceeeEEccccccccccccc-cccc---------ccCCCceEEEEECCEEEEeccchhhcc-c-
Confidence 79999999986643 2333 3468998764322100 0000 000000011112346889998653211 0
Q ss_pred eEEeccCCCCeecCHHHHHHHHHHHhccccCCCCCCCcEEEecCCCCCHHHHHHHhc--c-c--cCccCCeeeccceE-E
Q 037470 90 MEVLSPLKDGVVVDWDIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNTQQQRESSAF--S-F--WVCVCGILVFCPVI-E 163 (445)
Q Consensus 90 ~~~~~P~~~g~i~d~d~~e~i~~~~~~~~L~~~~~~~~vll~ep~~~~~~~r~~~~e--E-~--~~~~~~~~~~~p~v-~ 163 (445)
..-.+-+.+.... -+....++.+++.. .+.+ ....|++-.|...-...|+.+.+ . . ++ ......+..+ +
T Consensus 70 ~~~~~~~~~~~~~-~~~~~~L~~~Al~~-~~~~-~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~--~~~~i~I~~V~V 144 (320)
T TIGR03739 70 TNRARQLHDEYTE-TPEYMALLRGALAL-SKVR-EIDQLVVGLPVATLTTYKSALEKAVTGEHDIG--AGKAVTVRKVLA 144 (320)
T ss_pred CccceeccccccC-CHHHHHHHHHHHHH-hcCC-CCCEEEECCCHHHHHHHHHHHHHHhccceecC--CceEEEEEEEEE
Confidence 0011112222221 14667788777732 2322 22246777777765666666655 1 1 11 1122348889 9
Q ss_pred echhhhhhhcc---------CCceEEEEEcCCCceEEEEeecceecCccceEecccHHHHHHHHHHHHHhc
Q 037470 164 FDALVLTSFAL---------GRATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKSLESK 225 (445)
Q Consensus 164 ~~~~~la~~~~---------g~~tglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~ 225 (445)
.+|++.|.+.. .....+|||||+.+|+++.+.++.+........+.|-..+.+.+.+.+.++
T Consensus 145 ~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD~~~~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~ 215 (320)
T TIGR03739 145 VPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFDWLVARGMRLVQKRSGSVNGGMSDIYRLLAAEISKD 215 (320)
T ss_pred eCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeeeeehccCCEEcccccCCchhHHHHHHHHHHHHHHhh
Confidence 99999887653 235579999999999999888888888777788999999999999999754
No 47
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=98.48 E-value=1.5e-06 Score=85.96 Aligned_cols=119 Identities=22% Similarity=0.250 Sum_probs=81.1
Q ss_pred eEEEEEcCCCceEEEEeecceecCccceEecccHHHHHHHHHHHHHhcCCcccCccccccccCCCCCcceeccCCCCCch
Q 037470 178 TSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRYSFKRKENRPGEFQIVDLDFPNTTE 257 (445)
Q Consensus 178 tglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (445)
+.++||||++.|+++.+.+|.++.. +.+++||.++++.+.+.+.
T Consensus 189 ~~~lvdiG~~~t~l~i~~~g~~~~~--r~i~~G~~~i~~~i~~~~~---------------------------------- 232 (348)
T TIGR01175 189 DAALVDIGATSSTLNLLHPGRMLFT--REVPFGTRQLTSELSRAYG---------------------------------- 232 (348)
T ss_pred eEEEEEECCCcEEEEEEECCeEEEE--EEeechHHHHHHHHHHHcC----------------------------------
Confidence 4899999999999999999999885 7899999999998886652
Q ss_pred hHHhHhHHHHHHHHhhcceecCCCcCCccccCCCCCceeECCCCceEeeCcccccccccccCCCCCCCCCCCCCccCCCC
Q 037470 258 SYKLYCQRVIASDIKECVCRAPDTPYDESAYSNIPMTPYELPDGQVIEIGADRFKTPDVLFNPSLVQTIPGMENFAENIP 337 (445)
Q Consensus 258 s~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~lpdg~~i~l~~er~~~~E~lF~p~~~~~~~~~~~~~~~~~ 337 (445)
...+.++++|........ + + .+ + ..+.
T Consensus 233 -----~~~~~Ae~~k~~~~~~~~---------------~---~-------~~---~----~~~~---------------- 259 (348)
T TIGR01175 233 -----LNPEEAGEAKQQGGLPLL---------------Y---D-------PE---V----LRRF---------------- 259 (348)
T ss_pred -----CCHHHHHHHHhcCCCCCc---------------h---h-------HH---H----HHHH----------------
Confidence 123457778875321100 0 0 00 0 0000
Q ss_pred CCCHHHHHHHHHHhCCHHhHHHHhcCccccCCCCchhhHHHHHHHHHh
Q 037470 338 FRGLPQMVIDSINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLL 385 (445)
Q Consensus 338 ~~~L~~~I~~~i~~~~~d~r~~L~~nIvLtGG~s~i~Gl~~RL~~eL~ 385 (445)
...|..-|.++|.-.-........+.|+||||++.++||.+.|+++|.
T Consensus 260 ~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~ 307 (348)
T TIGR01175 260 KGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLG 307 (348)
T ss_pred HHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHC
Confidence 113555566666544222222345889999999999999999999995
No 48
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=98.43 E-value=5.7e-08 Score=84.28 Aligned_cols=113 Identities=27% Similarity=0.282 Sum_probs=80.2
Q ss_pred ccCCCCeecCHHHHHHHHHHH---hccccCCCCCCCcEEEecCCCCCHHHHHHHhc--cccCccCCeeeccceE-Eechh
Q 037470 94 SPLKDGVVVDWDIVDSIWDHA---FRECLLIDPKEHPMLLAEPSSNTQQQRESSAF--SFWVCVCGILVFCPVI-EFDAL 167 (445)
Q Consensus 94 ~P~~~g~i~d~d~~e~i~~~~---~~~~L~~~~~~~~vll~ep~~~~~~~r~~~~e--E~~~~~~~~~~~~p~v-~~~~~ 167 (445)
.-+++|++.|+-..-.+.+.. ++++|++...... -+.|+-+.....+.... |.-| ...+ ...+|
T Consensus 61 dvVRDGiVvdf~eaveiVrrlkd~lEk~lGi~~tha~--taiPPGt~~~~~ri~iNViESAG--------levl~vlDEP 130 (277)
T COG4820 61 DVVRDGIVVDFFEAVEIVRRLKDTLEKQLGIRFTHAA--TAIPPGTEQGDPRISINVIESAG--------LEVLHVLDEP 130 (277)
T ss_pred hhhccceEEehhhHHHHHHHHHHHHHHhhCeEeeecc--ccCCCCccCCCceEEEEeecccC--------ceeeeecCCc
Confidence 456899998874433343333 3577776543211 11233332222233333 8888 8899 99999
Q ss_pred hhhhhccCCceEEEEEcCCCceEEEEeecceecCccceEecccHHHHHHHH
Q 037470 168 VLTSFALGRATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCL 218 (445)
Q Consensus 168 ~la~~~~g~~tglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~lt~~l 218 (445)
.++++-.+...|.|||+|.++|-|.-+-+|.++.. -.-+.||.+++-.|
T Consensus 131 TAaa~vL~l~dg~VVDiGGGTTGIsi~kkGkViy~--ADEpTGGtHmtLvl 179 (277)
T COG4820 131 TAAADVLQLDDGGVVDIGGGTTGISIVKKGKVIYS--ADEPTGGTHMTLVL 179 (277)
T ss_pred hhHHHHhccCCCcEEEeCCCcceeEEEEcCcEEEe--ccCCCCceeEEEEE
Confidence 99999999999999999999999999999999986 44789998877544
No 49
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.36 E-value=6.4e-06 Score=77.39 Aligned_cols=42 Identities=26% Similarity=0.454 Sum_probs=38.7
Q ss_pred EEEEEcCCCceEEEEeecceecCccceEecccHHHHHHHHHHHH
Q 037470 179 SLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKSL 222 (445)
Q Consensus 179 glVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~lt~~l~~~l 222 (445)
.+|+|||+..|.+.-+++|+++.. +..++||++++..+.+..
T Consensus 195 vav~~Igat~s~l~vi~~gk~ly~--r~~~~g~~Qlt~~i~r~~ 236 (354)
T COG4972 195 VAVFDIGATSSELLVIQDGKILYT--REVPVGTDQLTQEIQRAY 236 (354)
T ss_pred heeeeecccceEEEEEECCeeeeE--eeccCcHHHHHHHHHHHh
Confidence 469999999999999999999997 889999999999988775
No 50
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=97.94 E-value=3.7e-05 Score=76.47 Aligned_cols=121 Identities=14% Similarity=0.235 Sum_probs=78.1
Q ss_pred EeccCCCCeecCHHHHHHHHHHHhccccCCCCCC--CcEEEecCCCCCHHHHHHHhccccCccCCeeeccceE-Eechhh
Q 037470 92 VLSPLKDGVVVDWDIVDSIWDHAFRECLLIDPKE--HPMLLAEPSSNTQQQRESSAFSFWVCVCGILVFCPVI-EFDALV 168 (445)
Q Consensus 92 ~~~P~~~g~i~d~d~~e~i~~~~~~~~L~~~~~~--~~vll~ep~~~~~~~r~~~~eE~~~~~~~~~~~~p~v-~~~~~~ 168 (445)
...|+......|-++++.+.+.-| +.-++.+++ ..+.++.-..+..++-+++++ .++.... ...|... +--+++
T Consensus 53 ~fTPl~~~~~ID~~~i~~~V~~ey-~~Agi~~~die~~ahIITg~~~~~~Nl~~~v~-~~~~~~g-dfVVA~AG~~le~i 129 (475)
T PRK10719 53 YFTPLLKQGEIDEAAIKELIEEEY-QKAGIAPESIDSGAVIITGETARKENAREVVM-ALSGSAG-DFVVATAGPDLESI 129 (475)
T ss_pred eecCCCCCccccHHHHHHHHHHHH-HHcCCCHHHccccEEEEEechhHHHHHHHHHH-Hhccccc-ceeeeccCccHHHh
Confidence 456887667779999999999888 677887753 333333333344455455554 2110000 0002222 333444
Q ss_pred hhhhccC--------CceEEEEEcCCCceEEEEeecceecCccceEecccHHHHHHH
Q 037470 169 LTSFALG--------RATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNC 217 (445)
Q Consensus 169 la~~~~g--------~~tglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~lt~~ 217 (445)
++.+|+| ....++||||+++|+++.+.+|.++.. ..+++||+++|..
T Consensus 130 va~~ASg~avLseEke~gVa~IDIGgGTT~iaVf~~G~l~~T--~~l~vGG~~IT~D 184 (475)
T PRK10719 130 IAGKGAGAQTLSEERNTRVLNIDIGGGTANYALFDAGKVIDT--ACLNVGGRLIETD 184 (475)
T ss_pred hhHHHhhHHHhhhhccCceEEEEeCCCceEEEEEECCEEEEE--EEEecccceEEEC
Confidence 4444444 267899999999999999999999986 6699999988864
No 51
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.0008 Score=69.20 Aligned_cols=93 Identities=19% Similarity=0.195 Sum_probs=73.4
Q ss_pred CCcEEEecCCCCCHHHHHHHhc--cccCccCCeeeccceE-EechhhhhhhccCC------------ceEEEEEcCCCce
Q 037470 125 EHPMLLAEPSSNTQQQRESSAF--SFWVCVCGILVFCPVI-EFDALVLTSFALGR------------ATSLVVDCGGGST 189 (445)
Q Consensus 125 ~~~vll~ep~~~~~~~r~~~~e--E~~~~~~~~~~~~p~v-~~~~~~la~~~~g~------------~tglVVDiG~~~t 189 (445)
-.+++|..|.+.+..+|..++. ...| +.-+ ++++-.+.+.++|. .+-+.||+||+.+
T Consensus 137 v~DcvIavP~~FTd~qRravldAA~iag--------Ln~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~ 208 (727)
T KOG0103|consen 137 VSDCVIAVPSYFTDSQRRAVLDAARIAG--------LNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSY 208 (727)
T ss_pred CCCeeEeccccccHHHHHHHHhHHhhcC--------ccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccc
Confidence 4579999999999999999999 7777 7788 88888888877773 3578899999999
Q ss_pred EEEEee--cceecC-ccceEecccHHHHHHHHHHHHHhc
Q 037470 190 TVAPVH--DGYVLQ-KGVTTSPIGGEFLTNCLMKSLESK 225 (445)
Q Consensus 190 ~v~pV~--~G~~~~-~~~~~~~~GG~~lt~~l~~~l~~~ 225 (445)
++..+. .|..-. .+...-.+||++.++.|.+.+...
T Consensus 209 q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L~~hfa~e 247 (727)
T KOG0103|consen 209 QVSIAAFTKGKLKVLATAFDRKLGGRDFDEALIDHFAKE 247 (727)
T ss_pred eeeeeeeccCcceeeeeecccccccchHHHHHHHHHHHH
Confidence 987665 454322 223334799999999999998764
No 52
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.00034 Score=72.27 Aligned_cols=92 Identities=21% Similarity=0.221 Sum_probs=72.3
Q ss_pred CcEEEecCCCCCHHHHHHHhc--cccCccCCeeeccceE-EechhhhhhhccCC----------ceEEEEEcCCCceEEE
Q 037470 126 HPMLLAEPSSNTQQQRESSAF--SFWVCVCGILVFCPVI-EFDALVLTSFALGR----------ATSLVVDCGGGSTTVA 192 (445)
Q Consensus 126 ~~vll~ep~~~~~~~r~~~~e--E~~~~~~~~~~~~p~v-~~~~~~la~~~~g~----------~tglVVDiG~~~t~v~ 192 (445)
..++||.|++..+.+|..+++ .-.| +.-+ ++++..+++..+|. +.-++-|+|+++|+++
T Consensus 159 kd~ViTVP~~F~qaeR~all~Aa~iag--------l~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~At 230 (902)
T KOG0104|consen 159 KDMVITVPPFFNQAERRALLQAAQIAG--------LNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSAT 230 (902)
T ss_pred hheEEeCCcccCHHHHHHHHHHHHhcC--------chhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEE
Confidence 469999999999999999999 7778 8888 99999998887764 4668889999999999
Q ss_pred EeecceecCc-------cce------EecccHHHHHHHHHHHHHhc
Q 037470 193 PVHDGYVLQK-------GVT------TSPIGGEFLTNCLMKSLESK 225 (445)
Q Consensus 193 pV~~G~~~~~-------~~~------~~~~GG~~lt~~l~~~l~~~ 225 (445)
-|.--.+-.. .++ ....||..++..|..+|...
T Consensus 231 ivsy~~v~~k~~g~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~~ 276 (902)
T KOG0104|consen 231 IVSYQLVKTKEQGGKQPQIQVLGVGFDRTLGGLEMTMRLRDHLANE 276 (902)
T ss_pred EEEEEeeccccccCccceEEEEeeccCCccchHHHHHHHHHHHHHH
Confidence 8863222111 111 23678999999999998653
No 53
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=97.69 E-value=0.00011 Score=71.58 Aligned_cols=107 Identities=25% Similarity=0.263 Sum_probs=66.4
Q ss_pred HHHHHhccccCCCCCCCcEEEecCCC---CCH--HHHHHHhc--------------cccCccCCeeeccceE-Eechhhh
Q 037470 110 IWDHAFRECLLIDPKEHPMLLAEPSS---NTQ--QQRESSAF--------------SFWVCVCGILVFCPVI-EFDALVL 169 (445)
Q Consensus 110 i~~~~~~~~L~~~~~~~~vll~ep~~---~~~--~~r~~~~e--------------E~~~~~~~~~~~~p~v-~~~~~~l 169 (445)
...|++ ..-++.+.+-.++++.|.- ... ..++.+.. ..+. +..+ +.||++.
T Consensus 81 av~haL-~~~G~~~~~V~lvvGLPl~~y~~~~~~~~~~~i~rk~~n~~~~v~~~g~~~i~--------I~~V~V~PQ~~~ 151 (318)
T PF06406_consen 81 AVHHAL-LKAGLEPQDVDLVVGLPLSEYYDQDKQKNEENIERKKENLMRPVELNGGYTIT--------IKDVEVFPQSVG 151 (318)
T ss_dssp HHHHHH-HHHS--SSEEEEEEEE-HHHHB-TTSSB-HHHHHHHHHHTTS-EEETTB---E--------EEEEEEEESSHH
T ss_pred HHHHHH-HHcCCCCCCeEEEecCCHHHHHhhhhhhHHHHHHhhhcccccceeecCceeEE--------EeeEEEEcccHH
Confidence 456777 4457777777788888843 111 11122211 3455 7789 9999999
Q ss_pred hhhcc-----CCceEEEEEcCCCceEEEEeecceecC-ccceEecccHHHHHHHHHHHHHhc
Q 037470 170 TSFAL-----GRATSLVVDCGGGSTTVAPVHDGYVLQ-KGVTTSPIGGEFLTNCLMKSLESK 225 (445)
Q Consensus 170 a~~~~-----g~~tglVVDiG~~~t~v~pV~~G~~~~-~~~~~~~~GG~~lt~~l~~~l~~~ 225 (445)
|.|.. ...+.+|||||+.+|+++.|.++.... .+....++|-..+.+.+.+.|...
T Consensus 152 A~~~~~~~~~~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~~ 213 (318)
T PF06406_consen 152 AVFDALMDLDEDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIAQALRSA 213 (318)
T ss_dssp HHHHHHHTS-TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHHHHTT--
T ss_pred HHHHHHHhhcccCcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHHHHHHHh
Confidence 98874 236789999999999999998765443 333345789999999999998763
No 54
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=9.8e-05 Score=70.99 Aligned_cols=90 Identities=20% Similarity=0.291 Sum_probs=68.0
Q ss_pred CcEEEecCCCCCHHHHHHHhc--cccCccCCeeeccceE-EechhhhhhhccCC------ceEEEEEcCCCceEEE--Ee
Q 037470 126 HPMLLAEPSSNTQQQRESSAF--SFWVCVCGILVFCPVI-EFDALVLTSFALGR------ATSLVVDCGGGSTTVA--PV 194 (445)
Q Consensus 126 ~~vll~ep~~~~~~~r~~~~e--E~~~~~~~~~~~~p~v-~~~~~~la~~~~g~------~tglVVDiG~~~t~v~--pV 194 (445)
..-++|.|.+....+|+..-. ---| ...+ ++++|.+|+.++|. .+-||.|.|.++-+|. -|
T Consensus 173 ~~AVvTvPAYFNDAQrQATKDAGtIAg--------LnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtI 244 (663)
T KOG0100|consen 173 THAVVTVPAYFNDAQRQATKDAGTIAG--------LNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTI 244 (663)
T ss_pred cceEEecchhcchHHHhhhcccceecc--------ceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEE
Confidence 356788999999999988877 4445 6678 99999999988875 5789999999988776 44
Q ss_pred eccee-cCccceEecccHHHHHHHHHHHHH
Q 037470 195 HDGYV-LQKGVTTSPIGGEFLTNCLMKSLE 223 (445)
Q Consensus 195 ~~G~~-~~~~~~~~~~GG~~lt~~l~~~l~ 223 (445)
.+|.. +..+.-....||.+.++...+.+-
T Consensus 245 dnGVFeVlaTnGDThLGGEDFD~rvm~~fi 274 (663)
T KOG0100|consen 245 DNGVFEVLATNGDTHLGGEDFDQRVMEYFI 274 (663)
T ss_pred cCceEEEEecCCCcccCccchHHHHHHHHH
Confidence 56653 222334568999999987776653
No 55
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00061 Score=70.31 Aligned_cols=91 Identities=20% Similarity=0.297 Sum_probs=73.8
Q ss_pred CcEEEecCCCCCHHHHHHHhc--cccCccCCeeeccceE-EechhhhhhhccCC-------ceEEEEEcCCCceEEEEee
Q 037470 126 HPMLLAEPSSNTQQQRESSAF--SFWVCVCGILVFCPVI-EFDALVLTSFALGR-------ATSLVVDCGGGSTTVAPVH 195 (445)
Q Consensus 126 ~~vll~ep~~~~~~~r~~~~e--E~~~~~~~~~~~~p~v-~~~~~~la~~~~g~-------~tglVVDiG~~~t~v~pV~ 195 (445)
..+++|.|......+|+.+-+ ...| ++.+ +.++|.+++.++|. .+-+|.|.|++..+|.++.
T Consensus 144 ~~aviTVPa~F~~~Qr~at~~A~~iaG--------l~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~ 215 (620)
T KOG0101|consen 144 KKAVVTVPAYFNDSQRAATKDAALIAG--------LNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLS 215 (620)
T ss_pred eeEEEEecCCcCHHHHHHHHHHHHhcC--------CceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEE
Confidence 468999999999999988887 8888 8899 99999999988873 4669999999999999887
Q ss_pred --cce-ecCccceEecccHHHHHHHHHHHHHh
Q 037470 196 --DGY-VLQKGVTTSPIGGEFLTNCLMKSLES 224 (445)
Q Consensus 196 --~G~-~~~~~~~~~~~GG~~lt~~l~~~l~~ 224 (445)
+|. .+....-..++||.++++.|.+.+..
T Consensus 216 i~gG~~~vkat~gd~~lGGedf~~~l~~h~~~ 247 (620)
T KOG0101|consen 216 LEGGIFEVKATAGDTHLGGEDFDNKLVNHFAA 247 (620)
T ss_pred eccchhhhhhhcccccccchhhhHHHHHHHHH
Confidence 453 22333445789999999988877643
No 56
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=97.01 E-value=0.0024 Score=63.78 Aligned_cols=128 Identities=17% Similarity=0.309 Sum_probs=87.1
Q ss_pred EeccCCCCeecCHHHHHHHHHHHhccccCCCCCC---CcEEEecCCCCCHHHHHHHhc---cccCccCCeeeccceE-Ee
Q 037470 92 VLSPLKDGVVVDWDIVDSIWDHAFRECLLIDPKE---HPMLLAEPSSNTQQQRESSAF---SFWVCVCGILVFCPVI-EF 164 (445)
Q Consensus 92 ~~~P~~~g~i~d~d~~e~i~~~~~~~~L~~~~~~---~~vll~ep~~~~~~~r~~~~e---E~~~~~~~~~~~~p~v-~~ 164 (445)
...|+.+....|-++++.|.+.-| +.-++.|++ -.|+||--..- +++-+.+++ +..| ...|..- =-
T Consensus 50 ~fTPl~~~~~ID~~al~~iv~~eY-~~Agi~p~~I~TGAVIITGETAr-KeNA~~v~~~Ls~~aG-----DFVVATAGPd 122 (473)
T PF06277_consen 50 YFTPLLSQTEIDAEALKEIVEEEY-RKAGITPEDIDTGAVIITGETAR-KENAREVLHALSGFAG-----DFVVATAGPD 122 (473)
T ss_pred cccCCCCCCccCHHHHHHHHHHHH-HHcCCCHHHCccccEEEecchhh-hhhHHHHHHHHHHhcC-----CEEEEccCCC
Confidence 456888777779999999999988 778888864 45888766543 333333333 3333 0013333 44
Q ss_pred chhhhhhhccCC--------ceEEEEEcCCCceEEEEeecceecCccceEecccHHHH-----------HHHHHHHHHhc
Q 037470 165 DALVLTSFALGR--------ATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFL-----------TNCLMKSLESK 225 (445)
Q Consensus 165 ~~~~la~~~~g~--------~tglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~l-----------t~~l~~~l~~~ 225 (445)
-++++|..|+|. .+-+=+|||.++|.++-+.+|.++..++ +++||+.+ ..-++.++++.
T Consensus 123 LEsiiAgkGsGA~~~S~~~~~~V~NiDIGGGTtN~avf~~G~v~~T~c--l~IGGRLi~~d~~g~i~yis~~~~~l~~~~ 200 (473)
T PF06277_consen 123 LESIIAGKGSGAAALSKEHHTVVANIDIGGGTTNIAVFDNGEVIDTAC--LDIGGRLIEFDPDGRITYISPPIQRLLEEL 200 (473)
T ss_pred HHHHHhccCccHHHHhhhhCCeEEEEEeCCCceeEEEEECCEEEEEEE--EeeccEEEEEcCCCcEEEECHHHHHHHHHh
Confidence 577888888873 4555579999999999999999999755 89999743 34455555555
Q ss_pred CCc
Q 037470 226 GIT 228 (445)
Q Consensus 226 ~~~ 228 (445)
+..
T Consensus 201 ~~~ 203 (473)
T PF06277_consen 201 GLE 203 (473)
T ss_pred CCC
Confidence 543
No 57
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=96.46 E-value=0.0034 Score=61.84 Aligned_cols=67 Identities=21% Similarity=0.280 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHhCCHHhHHHHhcCccccCCCCchhhHHHHHHHHHhhhCCCCceEEEEecCCCCCccceeEeeeEEeec
Q 037470 340 GLPQMVIDSINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVVSSGNATERRFSVWIGGSILAS 418 (445)
Q Consensus 340 ~L~~~I~~~i~~~~~d~r~~L~~nIvLtGG~s~i~Gl~~RL~~eL~~~~p~~~~v~v~~~~~~~~~~~~~W~Gasilas 418 (445)
+|..+|.+-+.. -.-.+..+-+.|+++||.++.+|+.+.|++.|. .+++. +.++++..-+||+++|+
T Consensus 336 Gl~~SIa~rv~~-~l~~~~~i~~~VvftGGva~N~gvv~ale~~Lg--------~~iiv---Pe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 336 AACHSVAEQVYE-QQLQEIDVREPVILVGGTSLIEGLVKALGDLLG--------IEVVV---PEYSQYIGAVGAALLAS 402 (404)
T ss_pred HHHHHHHHHHHH-HHhhcCCCCCcEEEECChhhhHHHHHHHHHHhC--------CcEEE---CCcccHHHHHHHHHHhc
Confidence 555555554432 001112334569999999999999999999884 24555 56788999999998874
No 58
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.03 Score=56.39 Aligned_cols=90 Identities=21% Similarity=0.305 Sum_probs=68.9
Q ss_pred cEEEecCCCCCHHHHHHHhc--cccCccCCeeeccceE-EechhhhhhhccCCc-----eEEEEEcCCCceEEE--Eeec
Q 037470 127 PMLLAEPSSNTQQQRESSAF--SFWVCVCGILVFCPVI-EFDALVLTSFALGRA-----TSLVVDCGGGSTTVA--PVHD 196 (445)
Q Consensus 127 ~vll~ep~~~~~~~r~~~~e--E~~~~~~~~~~~~p~v-~~~~~~la~~~~g~~-----tglVVDiG~~~t~v~--pV~~ 196 (445)
..+++.|.++...+|+..-. .-.+ ...+ ..++|.+++.++|.. .-.|-|+|.++..|. =|.+
T Consensus 162 ~avvtvpAyfndsqRqaTkdag~iag--------l~vlrvineptaaalaygld~k~~g~iaV~dLgggtfdisilei~~ 233 (640)
T KOG0102|consen 162 NAVITVPAYFNDSQRQATKDAGQIAG--------LNVLRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDISILEIED 233 (640)
T ss_pred heeeccHHHHhHHHHHHhHhhhhhcc--------ceeeccCCccchhHHhhcccccCCCceEEEEcCCceeeeeeehhcc
Confidence 57899999999999988877 5566 6678 899999999888753 557889999976655 3457
Q ss_pred ceecC-ccceEecccHHHHHHHHHHHHHh
Q 037470 197 GYVLQ-KGVTTSPIGGEFLTNCLMKSLES 224 (445)
Q Consensus 197 G~~~~-~~~~~~~~GG~~lt~~l~~~l~~ 224 (445)
|...- .+-...-.||.+++.++..++-.
T Consensus 234 gvfevksTngdtflggedfd~~~~~~~v~ 262 (640)
T KOG0102|consen 234 GVFEVKSTNGDTHLGGEDFDNALVRFIVS 262 (640)
T ss_pred ceeEEEeccCccccChhHHHHHHHHHHHH
Confidence 76433 33345678999999999988754
No 59
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=95.87 E-value=0.024 Score=53.15 Aligned_cols=44 Identities=23% Similarity=0.271 Sum_probs=33.2
Q ss_pred EEEEEcCCCceEEEEeecceecCcc-ceEecccHHHHHHHHHHHH
Q 037470 179 SLVVDCGGGSTTVAPVHDGYVLQKG-VTTSPIGGEFLTNCLMKSL 222 (445)
Q Consensus 179 glVVDiG~~~t~v~pV~~G~~~~~~-~~~~~~GG~~lt~~l~~~l 222 (445)
..|||||.+.|.++-+.+|.+..-. ...+..|+-.+++.+.+.|
T Consensus 93 ~~vidiGgqd~k~i~~~~g~~~~~~~n~~ca~Gtg~f~e~~a~~l 137 (248)
T TIGR00241 93 RGVIDIGGQDSKVIKIDDGKVDDFTMNDKCAAGTGRFLEVTARRL 137 (248)
T ss_pred CEEEEecCCeeEEEEECCCcEeeeeecCcccccccHHHHHHHHHc
Confidence 4599999999999999999877311 1446777777777777665
No 60
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=94.71 E-value=0.13 Score=48.80 Aligned_cols=112 Identities=18% Similarity=0.278 Sum_probs=70.0
Q ss_pred EeccCCCCeecCHHHHHHHHHHHhccccCCCCCC---CcEEEecCCCCCHHHHHHHhc-----cccCccCCeeeccceE-
Q 037470 92 VLSPLKDGVVVDWDIVDSIWDHAFRECLLIDPKE---HPMLLAEPSSNTQQQRESSAF-----SFWVCVCGILVFCPVI- 162 (445)
Q Consensus 92 ~~~P~~~g~i~d~d~~e~i~~~~~~~~L~~~~~~---~~vll~ep~~~~~~~r~~~~e-----E~~~~~~~~~~~~p~v- 162 (445)
+..|+..---.|-++++++...-| ..-++.|+. ..|++|-...-.+..|..+.- -.|- +..-
T Consensus 52 ~FTPv~~q~~id~~alk~~v~eeY-~~AGi~pesi~sGAvIITGEtArk~NA~~vl~alSg~aGDFV--------VAtAG 122 (473)
T COG4819 52 FFTPVDKQGGIDEAALKKLVLEEY-QAAGIAPESIDSGAVIITGETARKRNARPVLMALSGSAGDFV--------VATAG 122 (473)
T ss_pred eeeeecccCCccHHHHHHHHHHHH-HHcCCChhccccccEEEeccccccccchHHHHHhhhcccceE--------EEecC
Confidence 344663333347788888877666 566777754 468888766655544544432 2222 3322
Q ss_pred EechhhhhhhccC-------Cce-EEEEEcCCCceEEEEeecceecCccceEecccHHHH
Q 037470 163 EFDALVLTSFALG-------RAT-SLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFL 214 (445)
Q Consensus 163 ~~~~~~la~~~~g-------~~t-glVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~l 214 (445)
=.-+++.|--++| +.+ -+=+|||.++|...-+..|.+...++ +++||+.+
T Consensus 123 PdLESiIAGkGaGA~t~Seqr~t~v~NlDIGGGTtN~slFD~Gkv~dTaC--LdiGGRLi 180 (473)
T COG4819 123 PDLESIIAGKGAGAQTLSEQRLTRVLNLDIGGGTTNYSLFDAGKVSDTAC--LDIGGRLI 180 (473)
T ss_pred CCHHHHhccCCccccchhhhhceEEEEEeccCCccceeeeccccccccee--eecCcEEE
Confidence 2334444444444 223 34479999999999999999998755 89999854
No 61
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=94.27 E-value=0.4 Score=46.68 Aligned_cols=44 Identities=30% Similarity=0.343 Sum_probs=37.6
Q ss_pred ccccCCCCchhhHHHHHHHHHhhhCCCCceEEEEecCCCCCccceeEeeeEEeec
Q 037470 364 ILLAGGTASMQQLKERLEKDLLEESPQAARVKVVSSGNATERRFSVWIGGSILAS 418 (445)
Q Consensus 364 IvLtGG~s~i~Gl~~RL~~eL~~~~p~~~~v~v~~~~~~~~~~~~~W~Gasilas 418 (445)
||++||++...++.+-|.+.|. .+|+. |+.+++..-+||+++++
T Consensus 346 iv~~GGva~n~av~~ale~~lg--------~~V~v---P~~~ql~GAiGAAL~a~ 389 (396)
T COG1924 346 IVLQGGVALNKAVVRALEDLLG--------RKVIV---PPYAQLMGAIGAALIAK 389 (396)
T ss_pred EEEECcchhhHHHHHHHHHHhC--------Ceeec---CCccchhhHHHHHHHHh
Confidence 9999999999999999999885 46666 57788888889888876
No 62
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=93.89 E-value=0.11 Score=53.84 Aligned_cols=39 Identities=23% Similarity=0.204 Sum_probs=32.8
Q ss_pred ceEEEEEcCCCceEEEEeecceecCccceEecccHHHHHHH
Q 037470 177 ATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNC 217 (445)
Q Consensus 177 ~tglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~lt~~ 217 (445)
.+++|||||+++|.++-+.+|.+... ..+|+|.-.+++.
T Consensus 132 ~~~lviDIGGGStEl~~~~~~~~~~~--~Sl~lG~vrl~e~ 170 (496)
T PRK11031 132 DQRLVVDIGGASTELVTGTGAQATSL--FSLSMGCVTWLER 170 (496)
T ss_pred CCEEEEEecCCeeeEEEecCCceeee--eEEeccchHHHHH
Confidence 35899999999999999999987765 6799998776654
No 63
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=93.15 E-value=0.29 Score=47.20 Aligned_cols=40 Identities=38% Similarity=0.377 Sum_probs=33.8
Q ss_pred ceEEEEEcCCCceEEEEeecceecCccceEecccHHHHHHHH
Q 037470 177 ATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCL 218 (445)
Q Consensus 177 ~tglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~lt~~l 218 (445)
..++|||+|.++|.++-+.+|.+... ..+|+|.-.+++.+
T Consensus 125 ~~~~v~DiGGGSte~~~~~~~~~~~~--~Sl~lG~vrl~e~f 164 (300)
T TIGR03706 125 ADGLVVDIGGGSTELILGKDFEPGEG--VSLPLGCVRLTEQF 164 (300)
T ss_pred CCcEEEEecCCeEEEEEecCCCEeEE--EEEccceEEhHHhh
Confidence 45799999999999999998887764 67999988877654
No 64
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.58 E-value=0.094 Score=53.77 Aligned_cols=41 Identities=29% Similarity=0.359 Sum_probs=31.6
Q ss_pred CceEEEEEcCCCceEEEEeecceecCccceEecccHHHHHHHH
Q 037470 176 RATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCL 218 (445)
Q Consensus 176 ~~tglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~lt~~l 218 (445)
...++|+|||+++|.++-+-+..+..- ..+|+|.-.+++.+
T Consensus 128 ~~~~lv~DIGGGStEl~~g~~~~~~~~--~Sl~~G~v~lt~~~ 168 (492)
T COG0248 128 KGDGLVIDIGGGSTELVLGDNFEIGLL--ISLPLGCVRLTERF 168 (492)
T ss_pred CCCEEEEEecCCeEEEEEecCCcccee--EEeecceEEeehhh
Confidence 678999999999999999987766654 56788865555443
No 65
>PRK10854 exopolyphosphatase; Provisional
Probab=91.21 E-value=0.41 Score=49.91 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=30.6
Q ss_pred ceEEEEEcCCCceEEEEeecceecCccceEecccHHHHHH
Q 037470 177 ATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTN 216 (445)
Q Consensus 177 ~tglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~lt~ 216 (445)
..++|||||+++|.++-+-+|.+... ...++|.-.+++
T Consensus 137 ~~~lvvDIGGGStEl~~~~~~~~~~~--~S~~lG~vrl~e 174 (513)
T PRK10854 137 GRKLVIDIGGGSTELVIGENFEPILV--ESRRMGCVSFAQ 174 (513)
T ss_pred CCeEEEEeCCCeEEEEEecCCCeeEe--EEEecceeeHHh
Confidence 35899999999999999999876654 456888766665
No 66
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=88.81 E-value=1.6 Score=35.73 Aligned_cols=42 Identities=29% Similarity=0.425 Sum_probs=33.3
Q ss_pred EEEEcCCCceEEEEeecceecCccceEeccc--------HHHHH--HHHHHHHH
Q 037470 180 LVVDCGGGSTTVAPVHDGYVLQKGVTTSPIG--------GEFLT--NCLMKSLE 223 (445)
Q Consensus 180 lVVDiG~~~t~v~pV~~G~~~~~~~~~~~~G--------G~~lt--~~l~~~l~ 223 (445)
++||||++.|.++-...|.... ...+++| |.+++ +.+.+-|+
T Consensus 2 ~~iDiGs~~~~~~i~~~~~~~~--~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~ 53 (120)
T PF14450_consen 2 VVIDIGSSKTKVAIAEDGSDGY--IRVLGVGEVPSKGIKGGHITDIEDISKAIK 53 (120)
T ss_dssp EEEEE-SSSEEEEEEETTEEEE--EEEES----------HHHHH--HHHHHHHT
T ss_pred EEEEcCCCcEEEEEEEeCCCCc--EEEEEEecccccccCCCEEEEHHHHHHHHH
Confidence 6899999999999999887776 4779999 99999 88887774
No 67
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=88.19 E-value=0.93 Score=43.32 Aligned_cols=42 Identities=33% Similarity=0.514 Sum_probs=35.4
Q ss_pred CCceEEEEEcCCCceEEEEeecceecCccceEecccHHHHHHHH
Q 037470 175 GRATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCL 218 (445)
Q Consensus 175 g~~tglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~lt~~l 218 (445)
....++|+|||+++|.++.+.+|.+... ..+|+|.-.+++.+
T Consensus 110 ~~~~~lviDIGGGStEl~~~~~~~~~~~--~Sl~lG~vrl~e~~ 151 (285)
T PF02541_consen 110 PDKNGLVIDIGGGSTELILFENGKVVFS--QSLPLGAVRLTERF 151 (285)
T ss_dssp TTSSEEEEEEESSEEEEEEEETTEEEEE--EEES--HHHHHHHH
T ss_pred ccCCEEEEEECCCceEEEEEECCeeeEe--eeeehHHHHHHHHH
Confidence 5678999999999999999999999886 77999998887765
No 68
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=88.05 E-value=0.54 Score=45.11 Aligned_cols=33 Identities=30% Similarity=0.429 Sum_probs=23.4
Q ss_pred hhh-ccCCceEEEEEcCCCceEEEEeecceecCc
Q 037470 170 TSF-ALGRATSLVVDCGGGSTTVAPVHDGYVLQK 202 (445)
Q Consensus 170 a~~-~~g~~tglVVDiG~~~t~v~pV~~G~~~~~ 202 (445)
+++ ..|..++++||||..+|+|.+|.+|.+...
T Consensus 69 a~~~~~g~~~~i~vDmGGTTtDi~~i~~G~p~~~ 102 (290)
T PF01968_consen 69 AAARLTGLENAIVVDMGGTTTDIALIKDGRPEIS 102 (290)
T ss_dssp HHH--HT-SSEEEEEE-SS-EEEEEEETTEE---
T ss_pred hhhhcCCCCCEEEEeCCCCEEEEEEEECCeeecc
Confidence 345 568889999999999999999999998643
No 69
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=83.35 E-value=0.37 Score=45.17 Aligned_cols=50 Identities=22% Similarity=0.300 Sum_probs=37.4
Q ss_pred cCccccCCCCchhhHHHHHHHHHhhhCCCCceEEEEecCCCCCccceeEeeeEEee
Q 037470 362 SSILLAGGTASMQQLKERLEKDLLEESPQAARVKVVSSGNATERRFSVWIGGSILA 417 (445)
Q Consensus 362 ~nIvLtGG~s~i~Gl~~RL~~eL~~~~p~~~~v~v~~~~~~~~~~~~~W~Gasila 417 (445)
.+|+++||.+.-+|+.+.|+++|... ...+.+.. ++++++..-+||++++
T Consensus 213 ~~v~~~GGva~n~~~~~~le~~l~~~---~~~~~v~~---~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 213 GTVLCTGGLALDAGLLEALKDAIQEA---KMAVAAEN---HPDAIYAGAIGAALWG 262 (262)
T ss_pred CcEEEECcccccHHHHHHHHHHhccC---CcceEecC---CCcchHHHHHHHHHcC
Confidence 46999999999999999999999532 12334433 4677888888887764
No 70
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=82.34 E-value=3.5 Score=38.67 Aligned_cols=65 Identities=22% Similarity=0.201 Sum_probs=46.4
Q ss_pred cccCccCCeeeccceE-EechhhhhhhccCCc-----eEEEEEcCCCceEEEEee-cceecCccceEecccHHHHHHHHH
Q 037470 147 SFWVCVCGILVFCPVI-EFDALVLTSFALGRA-----TSLVVDCGGGSTTVAPVH-DGYVLQKGVTTSPIGGEFLTNCLM 219 (445)
Q Consensus 147 E~~~~~~~~~~~~p~v-~~~~~~la~~~~g~~-----tglVVDiG~~~t~v~pV~-~G~~~~~~~~~~~~GG~~lt~~l~ 219 (445)
+.++ +|.- -..++-+|..+.-.| --.|+|+|+++|+..-+- +|.+.. ..+-=+|+.+|-.+.
T Consensus 106 ~~lg--------v~V~igGvEAemAi~GALTTPGt~~PlaIlDmG~GSTDAsii~~~g~v~~---iHlAGAG~mVTmlI~ 174 (332)
T PF08841_consen 106 EELG--------VPVEIGGVEAEMAILGALTTPGTDKPLAILDMGGGSTDASIINRDGEVTA---IHLAGAGNMVTMLIN 174 (332)
T ss_dssp HHHT--------SEEEEECEHHHHHHHHHTTSTT--SSEEEEEE-SSEEEEEEE-TTS-EEE---EEEE-SHHHHHHHHH
T ss_pred HHHC--------CceEEccccHHHHHhcccCCCCCCCCeEEEecCCCcccHHHhCCCCcEEE---EEecCCchhhHHHHH
Confidence 8899 9888 888888888876443 346789999999988887 554443 445567899998887
Q ss_pred HHH
Q 037470 220 KSL 222 (445)
Q Consensus 220 ~~l 222 (445)
.-|
T Consensus 175 sEL 177 (332)
T PF08841_consen 175 SEL 177 (332)
T ss_dssp HHC
T ss_pred Hhh
Confidence 765
No 71
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=79.93 E-value=0.31 Score=46.40 Aligned_cols=67 Identities=16% Similarity=0.216 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHhCCHHhHHHHhcCccccCCCCchhhHHHHHHHHHhhhCCCCceEEEEecCCCCCccceeEeeeEEeec
Q 037470 340 GLPQMVIDSINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVVSSGNATERRFSVWIGGSILAS 418 (445)
Q Consensus 340 ~L~~~I~~~i~~~~~d~r~~L~~nIvLtGG~s~i~Gl~~RL~~eL~~~~p~~~~v~v~~~~~~~~~~~~~W~Gasilas 418 (445)
||.+.|.+-+... -.|..+-..|+++||.+.-+|+.+.|+++|.. ++... +.++++..-+||+++|.
T Consensus 221 Gl~~sia~rv~~~--~~~~~i~~~v~~~GGva~N~~l~~al~~~Lg~--------~v~~~--p~~p~~~GAlGAAL~A~ 287 (293)
T TIGR03192 221 AYCQAMAERVVSL--LERIGVEEGFFITGGIAKNPGVVKRIERILGI--------KAVDT--KIDSQIAGALGAALFGY 287 (293)
T ss_pred HHHHHHHHHHHHH--hcccCCCCCEEEECcccccHHHHHHHHHHhCC--------CceeC--CCCccHHHHHHHHHHHH
Confidence 4555544443222 11223457899999999999999999999842 22211 35678888899998874
No 72
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=79.12 E-value=2 Score=41.63 Aligned_cols=29 Identities=34% Similarity=0.468 Sum_probs=25.8
Q ss_pred cCCceEEEEEcCCCceEEEEeecceecCc
Q 037470 174 LGRATSLVVDCGGGSTTVAPVHDGYVLQK 202 (445)
Q Consensus 174 ~g~~tglVVDiG~~~t~v~pV~~G~~~~~ 202 (445)
....++|++|||..+|+|+||.+|.+...
T Consensus 125 ~~~~~~I~~DmGGTTtDi~~i~~G~p~~~ 153 (318)
T TIGR03123 125 KRIPECLFVDMGSTTTDIIPIIDGEVAAK 153 (318)
T ss_pred hcCCCEEEEEcCccceeeEEecCCEeeee
Confidence 34688999999999999999999998764
No 73
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=78.77 E-value=0.73 Score=45.52 Aligned_cols=52 Identities=19% Similarity=0.261 Sum_probs=40.4
Q ss_pred HhcCccccCCCCchhhHHHHHHHHHhhhCCCCceEEEEecCCCCCccceeEeeeEEee
Q 037470 360 LFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVVSSGNATERRFSVWIGGSILA 417 (445)
Q Consensus 360 L~~nIvLtGG~s~i~Gl~~RL~~eL~~~~p~~~~v~v~~~~~~~~~~~~~W~Gasila 417 (445)
+-..|+++||.+.-+|+.+.|++.|....+ ..+|+. +.++++..-+||+++|
T Consensus 381 i~~~VvftGGvA~N~gvv~aLe~~L~~~~~---~~~V~V---p~~pq~~GALGAAL~a 432 (432)
T TIGR02259 381 ITDQFTFTGGVAKNEAAVKELRKLIKENYG---EVQINI---DPDSIYTGALGASEFA 432 (432)
T ss_pred CCCCEEEECCccccHHHHHHHHHHHccccC---CCeEec---CCCccHHHHHHHHHhC
Confidence 346899999999999999999999965432 234555 4678888888888764
No 74
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=75.23 E-value=2 Score=39.63 Aligned_cols=24 Identities=29% Similarity=0.667 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCceEEEEeeccee
Q 037470 176 RATSLVVDCGGGSTTVAPVHDGYV 199 (445)
Q Consensus 176 ~~tglVVDiG~~~t~v~pV~~G~~ 199 (445)
..+++.||+|+.+|+|+||.+|..
T Consensus 129 ~dsci~VD~GSTTtDIIPi~~ge~ 152 (330)
T COG1548 129 KDSCILVDMGSTTTDIIPIKDGEA 152 (330)
T ss_pred CCceEEEecCCcccceEeecchhh
Confidence 357999999999999999999973
No 75
>PRK13317 pantothenate kinase; Provisional
Probab=73.70 E-value=1.3 Score=42.07 Aligned_cols=72 Identities=19% Similarity=0.218 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHhCCHH-hHHHHhcCccccC-CCCchhhHHHHHHHHHhhhCCCCceEEEEecCCCCCccceeEeeeEEe
Q 037470 339 RGLPQMVIDSINKCDVD-IRRELFSSILLAG-GTASMQQLKERLEKDLLEESPQAARVKVVSSGNATERRFSVWIGGSIL 416 (445)
Q Consensus 339 ~~L~~~I~~~i~~~~~d-~r~~L~~nIvLtG-G~s~i~Gl~~RL~~eL~~~~p~~~~v~v~~~~~~~~~~~~~W~Gasil 416 (445)
.+|..+|.+.|..+-.- .|..-.++|+++| |.+..|++.++|.+.++. ...+++. +.+++|..-+||+++
T Consensus 200 asl~~~v~~~I~~lA~~~ar~~~~~~Ivf~G~gla~n~~l~~~l~~~l~~-----~~~~~~~---p~~~~~~gAlGAaL~ 271 (277)
T PRK13317 200 AGVIGLVGEVITTLSIQAAREKNIENIVYIGSTLTNNPLLQEIIESYTKL-----RNCTPIF---LENGGYSGAIGALLL 271 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEEECcccccCHHHHHHHHHHHhc-----CCceEEe---cCCCchhHHHHHHHH
Confidence 35555555555443211 1323348999999 799999999999987752 1245555 467788888998877
Q ss_pred ec
Q 037470 417 AS 418 (445)
Q Consensus 417 as 418 (445)
+.
T Consensus 272 a~ 273 (277)
T PRK13317 272 AT 273 (277)
T ss_pred hh
Confidence 54
No 76
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=59.68 E-value=0.52 Score=44.66 Aligned_cols=67 Identities=19% Similarity=0.359 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHhCCHHhHHHHhcCccccCCCCchhhHHHHHHHHHhhhCCCCceEEEEecCCCCCccceeEeeeEEee
Q 037470 340 GLPQMVIDSINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVVSSGNATERRFSVWIGGSILA 417 (445)
Q Consensus 340 ~L~~~I~~~i~~~~~d~r~~L~~nIvLtGG~s~i~Gl~~RL~~eL~~~~p~~~~v~v~~~~~~~~~~~~~W~Gasila 417 (445)
.|.+.|...+.+..... ..|+|+||...-..+.+.|++.|.+.++.. ++. . +..+.+.+..||.++|
T Consensus 205 ~la~~i~~~~~~~~~~~-----~~v~l~GGv~~~~~~~~~l~~~l~~~~~~~-~~~--~---~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 205 ELAELIKAVLKRLGPEK-----EPVVLSGGVFKNSPLVKALRDALKEKLPKV-PII--I---PVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHTCTCCC-----CSEEEESGGGGCHHHHHHHGGGS-HHHHCC-TCE--C---ECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCC-----CeEEEECCccCchHHHHHHHHHHHHhcCCC-ceE--E---CCCCCccHHHHHHHhC
Confidence 35555555555554321 129999999988888887877776665432 222 2 3457788888887764
No 77
>PRK13318 pantothenate kinase; Reviewed
Probab=58.25 E-value=78 Score=29.60 Aligned_cols=120 Identities=13% Similarity=0.087 Sum_probs=0.0
Q ss_pred EEEeCCCceeEeee--cCCCCCCcccCcceeeecCCCcccccccccCCCccccCCCccCCcCCCCCcceEeccccccCcC
Q 037470 10 IVIDLGSHTCKAGY--AGEDAPKAVFPSVVGAIDQMDIDDSANAERNSGSAIDSKNNVDSNKGKGKRKLYVGTQSLGFRR 87 (445)
Q Consensus 10 vViD~Gs~~~k~G~--ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 87 (445)
+.||+|..++|+|+ .+.-..+..+|+.
T Consensus 3 L~IDIGnT~iK~al~d~g~i~~~~~~~t~--------------------------------------------------- 31 (258)
T PRK13318 3 LAIDVGNTNTVFGLYEGGKLVAHWRISTD--------------------------------------------------- 31 (258)
T ss_pred EEEEECCCcEEEEEEECCEEEEEEEEeCC---------------------------------------------------
Q ss_pred CCeEEeccCCCCeecCHHHHHHHHHHHhccccCCCCCCCcEEEecC--CCCCHHHHHHHhc-------------cccCcc
Q 037470 88 DHMEVLSPLKDGVVVDWDIVDSIWDHAFRECLLIDPKEHPMLLAEP--SSNTQQQRESSAF-------------SFWVCV 152 (445)
Q Consensus 88 ~~~~~~~P~~~g~i~d~d~~e~i~~~~~~~~L~~~~~~~~vll~ep--~~~~~~~r~~~~e-------------E~~~~~ 152 (445)
.....+.+...++.++ +..+.+..+-.-+..-. +-.....++.+.. ..++
T Consensus 32 ------------~~~~~~~~~~~l~~l~-~~~~~~~~~i~~I~issVvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-- 96 (258)
T PRK13318 32 ------------SRRTADEYGVWLKQLL-GLSGLDPEDITGIIISSVVPSVMHSLERMCRKYFNIEPLVVVGPGVKTG-- 96 (258)
T ss_pred ------------CCCCHHHHHHHHHHHH-HHcCCCcccCceEEEEEecCchHHHHHHHHHHHhCCCCeEEECCCcCCC--
Q ss_pred CCeeeccceE-Eec--------hhhhhhhccCCceEEEEEcCCCceEEEE-----eecceecC
Q 037470 153 CGILVFCPVI-EFD--------ALVLTSFALGRATSLVVDCGGGSTTVAP-----VHDGYVLQ 201 (445)
Q Consensus 153 ~~~~~~~p~v-~~~--------~~~la~~~~g~~tglVVDiG~~~t~v~p-----V~~G~~~~ 201 (445)
+|.- --+ .++++++..-....+|||+|...|-=+- ...|.+++
T Consensus 97 ------l~~~y~np~~lG~DR~a~~~aa~~~~~~~~ivid~GTA~t~d~v~~~g~~~GG~I~P 153 (258)
T PRK13318 97 ------INIKVDNPKEVGADRIVNAVAAYELYGGPLIVVDFGTATTFDVVSAKGEYLGGVIAP 153 (258)
T ss_pred ------CceecCChhhcchHHHHHHHHHHHHcCCCEEEEEcCCceEEEEEcCCCcEEEEEECc
No 78
>PRK13321 pantothenate kinase; Reviewed
Probab=55.44 E-value=64 Score=30.17 Aligned_cols=108 Identities=16% Similarity=0.133 Sum_probs=0.0
Q ss_pred EEEeCCCceeEeeecCCCCCCcccCcceeeecCCCcccccccccCCCccccCCCccCCcCCCCCcceEeccccccCcCCC
Q 037470 10 IVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDDSANAERNSGSAIDSKNNVDSNKGKGKRKLYVGTQSLGFRRDH 89 (445)
Q Consensus 10 vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~ 89 (445)
+.||+|..++|+|+..++ +......+.-....
T Consensus 3 L~IDIGnT~ik~gl~~~~--~i~~~~~~~T~~~~---------------------------------------------- 34 (256)
T PRK13321 3 LLIDVGNTNIKLGVFDGD--RLLRSFRLPTDKSR---------------------------------------------- 34 (256)
T ss_pred EEEEECCCeEEEEEEECC--EEEEEEEEecCCCC----------------------------------------------
Q ss_pred eEEeccCCCCeecCHHHHHHHHHHHhccccCCCCCCCcEEEecCCCCCHHHHHHHhc---cccCccCCeeeccceE-Eec
Q 037470 90 MEVLSPLKDGVVVDWDIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNTQQQRESSAF---SFWVCVCGILVFCPVI-EFD 165 (445)
Q Consensus 90 ~~~~~P~~~g~i~d~d~~e~i~~~~~~~~L~~~~~~~~vll~ep~~~~~~~r~~~~e---E~~~~~~~~~~~~p~v-~~~ 165 (445)
+-+.+...+..++ +.++.++++-.-+..-... +.....+.+ ..++ ++-. +..
T Consensus 35 -------------~~~~~~~~l~~l~-~~~~~~~~~i~~i~vssVv--p~~~~~i~~~~~~~~~--------~~~~~~~~ 90 (256)
T PRK13321 35 -------------TSDELGILLLSLF-RHAGLDPEDIRAVVISSVV--PPLNYSLESACKRYFG--------IKPLFVGP 90 (256)
T ss_pred -------------CHHHHHHHHHHHH-HHcCCChhhCCeEEEEeec--ccHHHHHHHHHHHHhC--------CCeEEECC
Q ss_pred ---------------------hhhhhhhccCCc-eEEEEEcCCCce
Q 037470 166 ---------------------ALVLTSFALGRA-TSLVVDCGGGST 189 (445)
Q Consensus 166 ---------------------~~~la~~~~g~~-tglVVDiG~~~t 189 (445)
.++++++..-.. ..+|||+|...|
T Consensus 91 ~~~~~l~~~y~~P~~lG~DR~a~~~aa~~~~~~~~~lvid~GTA~T 136 (256)
T PRK13321 91 GIKTGLKIRYDNPREVGADRIVNAVAARRLYPDRNLIVVDFGTATT 136 (256)
T ss_pred CCCCCcccccCChhhccHHHHHHHHHHHHHcCCCCEEEEECCCceE
No 79
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=54.32 E-value=6.4 Score=36.86 Aligned_cols=46 Identities=22% Similarity=0.270 Sum_probs=35.5
Q ss_pred eEEEEEcCCCceEEEEeecceecCccceEe----cccHHHHHHHHHHHHH
Q 037470 178 TSLVVDCGGGSTTVAPVHDGYVLQKGVTTS----PIGGEFLTNCLMKSLE 223 (445)
Q Consensus 178 tglVVDiG~~~t~v~pV~~G~~~~~~~~~~----~~GG~~lt~~l~~~l~ 223 (445)
+-+.|.+|...|.++.|.+|+++..-.-+. ..||-.++.-+.-.|.
T Consensus 164 nfIavE~G~aytaavaV~nGkIVDGmgGttgf~gylg~g~MD~ElAYaLa 213 (374)
T COG2441 164 NFIAVEIGFAYTAAVAVKNGKIVDGMGGTTGFTGYLGGGAMDGELAYALA 213 (374)
T ss_pred hhHHHhhhccceeEEEEECCEEEeccCCccCcccccccccccHHHHHHHH
Confidence 457899999999999999999988643333 5677777777776664
No 80
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=48.92 E-value=10 Score=37.61 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=20.7
Q ss_pred cCccccCCCCchhhHHHHHHHHHhh
Q 037470 362 SSILLAGGTASMQQLKERLEKDLLE 386 (445)
Q Consensus 362 ~nIvLtGG~s~i~Gl~~RL~~eL~~ 386 (445)
..|+||||++.=+-|.+||++.|..
T Consensus 286 ~~v~v~GGGa~N~~L~~~L~~~l~~ 310 (364)
T PF03702_consen 286 DEVYVCGGGARNPFLMERLQERLPG 310 (364)
T ss_dssp EEEEEESGGGG-HHHHHHHHHH-TT
T ss_pred ceEEEECCCcCCHHHHHHHHhhCCC
Confidence 5799999999999999999998854
No 81
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=47.85 E-value=65 Score=29.49 Aligned_cols=51 Identities=18% Similarity=0.177 Sum_probs=35.8
Q ss_pred cCCceEEEEEcCCCceEEEEeeccee-cCccceEecccHHHHHHHHHHHHHhcC
Q 037470 174 LGRATSLVVDCGGGSTTVAPVHDGYV-LQKGVTTSPIGGEFLTNCLMKSLESKG 226 (445)
Q Consensus 174 ~g~~tglVVDiG~~~t~v~pV~~G~~-~~~~~~~~~~GG~~lt~~l~~~l~~~~ 226 (445)
+|..+.+|+-+..+.|+|+...+.+- +.. .+++++--.+-..+.+.|+-.+
T Consensus 121 TgA~nPvvLYvSGGNTQvIAYse~rYrIFG--ETlDIAvGNClDRFAR~lklsN 172 (336)
T KOG2708|consen 121 TGAQNPVVLYVSGGNTQVIAYSEKRYRIFG--ETLDIAVGNCLDRFARVLKLSN 172 (336)
T ss_pred ccCCCCEEEEEeCCceEEEEEccceeeeec--ceehhhhhhhHHHHHHHhcCCC
Confidence 46678899999999999999998753 332 4566664455556677775544
No 82
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=45.73 E-value=18 Score=38.94 Aligned_cols=33 Identities=33% Similarity=0.440 Sum_probs=27.1
Q ss_pred hhhccCCce--EEEEEcCCCceEEEEeecceecCc
Q 037470 170 TSFALGRAT--SLVVDCGGGSTTVAPVHDGYVLQK 202 (445)
Q Consensus 170 a~~~~g~~t--glVVDiG~~~t~v~pV~~G~~~~~ 202 (445)
++|-+|..+ ++++|+|..+|++.-+.+|.+...
T Consensus 269 Aa~ltg~~~g~~i~~DmGGTStDva~i~~G~pe~~ 303 (674)
T COG0145 269 AAYLTGLKAGNAIVFDMGGTSTDVALIIDGEPEIS 303 (674)
T ss_pred HHHhcccccCCEEEEEcCCcceeeeeeecCcEEee
Confidence 344457777 999999999999999999887654
No 83
>PRK13324 pantothenate kinase; Reviewed
Probab=43.82 E-value=2.5e+02 Score=26.33 Aligned_cols=18 Identities=22% Similarity=0.431 Sum_probs=15.4
Q ss_pred cEEEeCCCceeEeeecCC
Q 037470 9 AIVIDLGSHTCKAGYAGE 26 (445)
Q Consensus 9 ~vViD~Gs~~~k~G~ag~ 26 (445)
-+.||+|-.++|.|+..+
T Consensus 2 iL~iDiGNT~ik~gl~~~ 19 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDG 19 (258)
T ss_pred EEEEEeCCCceEEEEEEC
Confidence 378999999999998754
No 84
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=41.72 E-value=19 Score=34.31 Aligned_cols=67 Identities=18% Similarity=0.306 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHhCCHHhHHHHhcCccccCCCCchhhHHHHHHHHHhhhCCCCceEEEEecCCCCCccceeEeeeEEee
Q 037470 340 GLPQMVIDSINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVVSSGNATERRFSVWIGGSILA 417 (445)
Q Consensus 340 ~L~~~I~~~i~~~~~d~r~~L~~nIvLtGG~s~i~Gl~~RL~~eL~~~~p~~~~v~v~~~~~~~~~~~~~W~Gasila 417 (445)
.|...|.+.+..++++ -|||.|+.+..+-|-+++++.+.+. +...++++..+ .-...++-+||+.++
T Consensus 220 ~la~~l~~l~~~~dpe-------~IvlgG~~~~~~~~~~~i~~~l~~~-~~~~~~~i~~s---~~~~~~~~~GAa~~~ 286 (291)
T PRK05082 220 AIARLIADLKATLDCQ-------CVVLGGSVGLAEGYLELVQAYLAQE-PAIYHVPLLAA---HYRHDAGLLGAALWA 286 (291)
T ss_pred HHHHHHHHHHHHhCCC-------EEEEcCccccHHHHHHHHHHHHHhc-ccccCCeEEEC---ccCCchhhhhHHHHh
Confidence 4666666666666664 3888888877777888888888764 22224444442 222344555665543
No 85
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=40.82 E-value=81 Score=27.78 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=18.6
Q ss_pred cCCCCeecCHHHHHHHHHHHh
Q 037470 95 PLKDGVVVDWDIVDSIWDHAF 115 (445)
Q Consensus 95 P~~~g~i~d~d~~e~i~~~~~ 115 (445)
-+++|.|.|.+.+...++.++
T Consensus 36 gi~~G~I~d~~~~~~~I~~ai 56 (187)
T smart00842 36 GIRKGVIVDIEAAARAIREAV 56 (187)
T ss_pred CccCcEEECHHHHHHHHHHHH
Confidence 478999999999998888888
No 86
>PRK09557 fructokinase; Reviewed
Probab=39.24 E-value=28 Score=33.31 Aligned_cols=49 Identities=16% Similarity=0.025 Sum_probs=35.3
Q ss_pred hccccCccCCeeeccceEEechhhhhhhcc-------CCceEEEEEcCCCceEEEEeecceecCc
Q 037470 145 AFSFWVCVCGILVFCPVIEFDALVLTSFAL-------GRATSLVVDCGGGSTTVAPVHDGYVLQK 202 (445)
Q Consensus 145 ~eE~~~~~~~~~~~~p~v~~~~~~la~~~~-------g~~tglVVDiG~~~t~v~pV~~G~~~~~ 202 (445)
+++.|+ +|.++.+.+-+++++- +..+.+.|.+|.+ +-..-|.+|.++..
T Consensus 92 l~~~~~--------~pv~~~NDa~aaA~aE~~~g~~~~~~~~~~l~igtG-iG~giv~~G~l~~G 147 (301)
T PRK09557 92 LSARLN--------REVRLANDANCLAVSEAVDGAAAGKQTVFAVIIGTG-CGAGVAINGRVHIG 147 (301)
T ss_pred HHHHHC--------CCEEEccchhHHHHHHHHhcccCCCCcEEEEEEccc-eEEEEEECCEEEec
Confidence 347889 9855888777776552 2366778899865 67777889988774
No 87
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=39.01 E-value=87 Score=29.37 Aligned_cols=58 Identities=22% Similarity=0.299 Sum_probs=36.2
Q ss_pred EechhhhhhhccC----CceEEEEEcCCCceEEEEeecceec---CccceEecccHHHHHHHHHHHH
Q 037470 163 EFDALVLTSFALG----RATSLVVDCGGGSTTVAPVHDGYVL---QKGVTTSPIGGEFLTNCLMKSL 222 (445)
Q Consensus 163 ~~~~~~la~~~~g----~~tglVVDiG~~~t~v~pV~~G~~~---~~~~~~~~~GG~~lt~~l~~~l 222 (445)
++.+-.++.+++- ..-+||||+|-+.|...-|.++++. .++..++ .-..+..+|.++.
T Consensus 209 ~mDskfaav~gal~dpaa~palvVd~GngHttaalvdedRI~gv~EHHT~~L--spekled~I~rf~ 273 (342)
T COG4012 209 AMDSKFAAVMGALVDPAADPALVVDYGNGHTTAALVDEDRIVGVYEHHTIRL--SPEKLEDQIIRFV 273 (342)
T ss_pred EEcchhHhhhhcccCcccCceEEEEccCCceEEEEecCCeEEEEeecccccC--CHHHHHHHHHHHH
Confidence 4444444444432 2478999999999999999988763 2333222 2355666665554
No 88
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=35.37 E-value=23 Score=33.99 Aligned_cols=49 Identities=10% Similarity=-0.105 Sum_probs=35.9
Q ss_pred hccccCccCCeeeccceEEechhhhhhhc-----c--CCceEEEEEcCCCceEEEEeecceecCc
Q 037470 145 AFSFWVCVCGILVFCPVIEFDALVLTSFA-----L--GRATSLVVDCGGGSTTVAPVHDGYVLQK 202 (445)
Q Consensus 145 ~eE~~~~~~~~~~~~p~v~~~~~~la~~~-----~--g~~tglVVDiG~~~t~v~pV~~G~~~~~ 202 (445)
+++.|+ +|.++.+..-+++++ . +..+.+.|.+|.+ .-..-|.+|.++..
T Consensus 92 l~~~~~--------~pV~ieNDa~aaalaE~~~g~~~~~~~~~~l~~gtG-iG~giv~~G~l~~G 147 (303)
T PRK13310 92 LSARLG--------RDVRLDNDANCFALSEAWDDEFTQYPLVMGLILGTG-VGGGLVFNGKPISG 147 (303)
T ss_pred HHHHHC--------CCeEEeccHhHHHHHHhhhccccCCCcEEEEEecCc-eEEEEEECCEEeeC
Confidence 337789 985488877776644 2 3468888999986 67788889998774
No 89
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=34.52 E-value=53 Score=30.12 Aligned_cols=40 Identities=25% Similarity=0.373 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhccccCCCCCCCcEEEecCCCCCHHHHHHHhc---cccC
Q 037470 105 DIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNTQQQRESSAF---SFWV 150 (445)
Q Consensus 105 d~~e~i~~~~~~~~L~~~~~~~~vll~ep~~~~~~~r~~~~e---E~~~ 150 (445)
|.++.|=+|+| ..+++||+|+.-...+.++++++++ |.||
T Consensus 74 dv~~~I~~~AF------~~S~yPvIlslE~Hcs~~qQ~~ma~~l~~~lG 116 (229)
T cd08627 74 DVLHTIKEHAF------VTSEYPIILSIEDHCSIVQQRNMAQHFKKVFG 116 (229)
T ss_pred HHHHHHHHhhc------cCCCCCEEEEEcccCCHHHHHHHHHHHHHHHh
Confidence 55666777777 3678999999999999999999998 8888
No 90
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=33.86 E-value=53 Score=30.75 Aligned_cols=40 Identities=23% Similarity=0.338 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhccccCCCCCCCcEEEecCCCCCHHHHHHHhc---cccC
Q 037470 105 DIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNTQQQRESSAF---SFWV 150 (445)
Q Consensus 105 d~~e~i~~~~~~~~L~~~~~~~~vll~ep~~~~~~~r~~~~e---E~~~ 150 (445)
|.++.|=+|+|. .+++||||+.-...+..+++++++ |.||
T Consensus 76 dv~~aI~~~AF~------~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lG 118 (257)
T cd08626 76 DVIQAIKDTAFV------TSDYPVILSFENHCSKPQQYKLAKYCEEIFG 118 (257)
T ss_pred HHHHHHHHHhcc------cCCCCEEEEEeccCCHHHHHHHHHHHHHHHh
Confidence 567777778873 578999999999999999999998 8888
No 91
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=33.37 E-value=55 Score=30.66 Aligned_cols=40 Identities=20% Similarity=0.349 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhccccCCCCCCCcEEEecCCCCCHHHHHHHhc---cccC
Q 037470 105 DIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNTQQQRESSAF---SFWV 150 (445)
Q Consensus 105 d~~e~i~~~~~~~~L~~~~~~~~vll~ep~~~~~~~r~~~~e---E~~~ 150 (445)
|.++.|=+|+| ..+++||+|+.....+.++++++++ |.||
T Consensus 74 ~v~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~~a~~l~~~~G 116 (258)
T cd08630 74 DVIQAVRQHAF------TASPYPVILSLENHCGLEQQAAMARHLQTILG 116 (258)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHh
Confidence 55667777777 3688999999999999999999998 8888
No 92
>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=33.06 E-value=57 Score=30.41 Aligned_cols=40 Identities=25% Similarity=0.369 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhccccCCCCCCCcEEEecCCCCCHHHHHHHhc---cccC
Q 037470 105 DIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNTQQQRESSAF---SFWV 150 (445)
Q Consensus 105 d~~e~i~~~~~~~~L~~~~~~~~vll~ep~~~~~~~r~~~~e---E~~~ 150 (445)
|.++.|=+|+| ..+++||+|+.-...+.++++++++ |.||
T Consensus 74 dv~~aI~~~AF------~~S~yPvIlSlE~Hcs~~qQ~~ma~~l~~~lG 116 (253)
T cd08632 74 DVIETINKYAF------VKNEFPVILSIENHCSIQQQKKIAQYLKEIFG 116 (253)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHh
Confidence 55677777777 3688999999999999999999998 8888
No 93
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=32.98 E-value=55 Score=30.64 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhccccCCCCCCCcEEEecCCCCCHHHHHHHhc---cccC
Q 037470 105 DIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNTQQQRESSAF---SFWV 150 (445)
Q Consensus 105 d~~e~i~~~~~~~~L~~~~~~~~vll~ep~~~~~~~r~~~~e---E~~~ 150 (445)
|.++.|=+|+| ..+++||||+.....+.++++++++ |.||
T Consensus 74 ~v~~~I~~~AF------~~S~yPvIlsLE~Hcs~~qQ~~ma~~l~~~lG 116 (258)
T cd08629 74 DVLRAIRDYAF------KASPYPVILSLENHCSLEQQRVMARHLRAILG 116 (258)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHH
Confidence 55667777777 3678999999999999999999999 8888
No 94
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=32.95 E-value=34 Score=33.91 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=21.4
Q ss_pred cCccccCCCCchhhHHHHHHHHHh
Q 037470 362 SSILLAGGTASMQQLKERLEKDLL 385 (445)
Q Consensus 362 ~nIvLtGG~s~i~Gl~~RL~~eL~ 385 (445)
..|++|||++.=|-|.+||+++|.
T Consensus 288 ~~vlv~GGGa~N~~Lm~~L~~~l~ 311 (365)
T PRK09585 288 DELLVCGGGARNPTLMERLAALLP 311 (365)
T ss_pred CEEEEECCCcchHHHHHHHHHhcC
Confidence 358999999999999999999883
No 95
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=32.94 E-value=57 Score=29.90 Aligned_cols=40 Identities=25% Similarity=0.315 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhccccCCCCCCCcEEEecCCCCCHHHHHHHhc---cccC
Q 037470 105 DIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNTQQQRESSAF---SFWV 150 (445)
Q Consensus 105 d~~e~i~~~~~~~~L~~~~~~~~vll~ep~~~~~~~r~~~~e---E~~~ 150 (445)
|.++.|=+|+| ..+++||+|+.....+.++++++++ |.||
T Consensus 74 dv~~aI~~~AF------~~s~yPvIlSlE~Hcs~~qQ~~ma~~l~~~lG 116 (227)
T cd08594 74 DVIETINKYAF------IKNEYPVILSIENHCSVQQQKKMAQYLKEILG 116 (227)
T ss_pred HHHHHHHHhhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHh
Confidence 55666777777 3588999999999999999999998 8888
No 96
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=32.67 E-value=55 Score=30.64 Aligned_cols=40 Identities=20% Similarity=0.286 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhccccCCCCCCCcEEEecCCCCCHHHHHHHhc---cccC
Q 037470 105 DIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNTQQQRESSAF---SFWV 150 (445)
Q Consensus 105 d~~e~i~~~~~~~~L~~~~~~~~vll~ep~~~~~~~r~~~~e---E~~~ 150 (445)
|.++.|=+|+| ..+++||+|+.....+..+++++++ |.||
T Consensus 74 ~v~~~Ik~~AF------~~s~yPvIlslE~Hc~~~qQ~~ma~~l~~~lG 116 (258)
T cd08631 74 DVVAAVAQYAF------QVSDYPVILSLENHCGVEQQQTMAQHLTEILG 116 (258)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHH
Confidence 45666777777 3688999999999999999999998 8888
No 97
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=32.55 E-value=55 Score=30.67 Aligned_cols=40 Identities=23% Similarity=0.316 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhccccCCCCCCCcEEEecCCCCCHHHHHHHhc---cccC
Q 037470 105 DIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNTQQQRESSAF---SFWV 150 (445)
Q Consensus 105 d~~e~i~~~~~~~~L~~~~~~~~vll~ep~~~~~~~r~~~~e---E~~~ 150 (445)
|.++.|=+|+| ..+++||||+.....+.++++++++ |.||
T Consensus 74 ~v~~~I~~~aF------~~s~yPvIlslE~Hcs~~qQ~~~a~~~~~~~g 116 (257)
T cd08593 74 DVIQAIREYAF------KVSPYPVILSLENHCSVEQQKVMAQHLKSILG 116 (257)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHH
Confidence 55677777777 3678999999999999999999999 8888
No 98
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=32.20 E-value=58 Score=30.50 Aligned_cols=40 Identities=20% Similarity=0.340 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhccccCCCCCCCcEEEecCCCCCHHHHHHHhc---cccC
Q 037470 105 DIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNTQQQRESSAF---SFWV 150 (445)
Q Consensus 105 d~~e~i~~~~~~~~L~~~~~~~~vll~ep~~~~~~~r~~~~e---E~~~ 150 (445)
|.++.|=+|+| ..+++||||+.....+..++.++++ |.||
T Consensus 74 ~v~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~~a~~l~~~lg 116 (257)
T cd08595 74 EVITTVEKYAF------EKSDYPVVLSLENHCSTEQQEIMAHYLVSILG 116 (257)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHH
Confidence 55667777777 3788999999999999999999998 8888
No 99
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=31.94 E-value=74 Score=29.71 Aligned_cols=60 Identities=23% Similarity=0.253 Sum_probs=41.1
Q ss_pred eEEechhhhhhhcc-------CCceEEEEEcCCCceEEEEeecceecC---ccceEecccHHHHHHHHHHHH
Q 037470 161 VIEFDALVLTSFAL-------GRATSLVVDCGGGSTTVAPVHDGYVLQ---KGVTTSPIGGEFLTNCLMKSL 222 (445)
Q Consensus 161 ~v~~~~~~la~~~~-------g~~tglVVDiG~~~t~v~pV~~G~~~~---~~~~~~~~GG~~lt~~l~~~l 222 (445)
.+++....+|.+|. .....+|||||-+.|-.+-|.+|.+.- ++. .-+-...|..+|.++-
T Consensus 144 ~~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v~~~rI~GvfEHHT--~~l~~~kL~~~l~~l~ 213 (254)
T PF08735_consen 144 EVVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALVKDGRIYGVFEHHT--GMLTPEKLEEYLERLR 213 (254)
T ss_pred ceEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEEeCCEEEEEEeccc--CCCCHHHHHHHHHHHH
Confidence 35666666666654 357899999999999999999998753 322 2334556666665553
No 100
>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core
Probab=31.55 E-value=61 Score=30.30 Aligned_cols=40 Identities=25% Similarity=0.337 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhccccCCCCCCCcEEEecCCCCCHHHHHHHhc---cccC
Q 037470 105 DIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNTQQQRESSAF---SFWV 150 (445)
Q Consensus 105 d~~e~i~~~~~~~~L~~~~~~~~vll~ep~~~~~~~r~~~~e---E~~~ 150 (445)
|.++.|=+|+| ..+++||||+.-...+.++++++++ +.||
T Consensus 74 dv~~~I~~~AF------~~S~yPvIlslE~Hcs~~qQ~~ma~~l~~~~G 116 (254)
T cd08596 74 DVVEAINRSAF------ITSDYPVILSIENHCSLQQQRKMAEIFKTVFG 116 (254)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHh
Confidence 55667777777 3578999999999999999999998 8888
No 101
>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=31.31 E-value=63 Score=30.18 Aligned_cols=40 Identities=23% Similarity=0.291 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhccccCCCCCCCcEEEecCCCCCHHHHHHHhc---cccC
Q 037470 105 DIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNTQQQRESSAF---SFWV 150 (445)
Q Consensus 105 d~~e~i~~~~~~~~L~~~~~~~~vll~ep~~~~~~~r~~~~e---E~~~ 150 (445)
|.++.|=+|+| ..+++||+|+.....+.++++++++ |.||
T Consensus 74 ~v~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lG 116 (254)
T cd08633 74 DVIETINKYAF------IKNEYPVILSIENHCSVPQQKKMAQYLTEILG 116 (254)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHh
Confidence 55677777777 3578999999999999999999998 8888
No 102
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=29.42 E-value=69 Score=30.01 Aligned_cols=40 Identities=23% Similarity=0.390 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhccccCCCCCCCcEEEecCCCCCHHHHHHHhc---cccC
Q 037470 105 DIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNTQQQRESSAF---SFWV 150 (445)
Q Consensus 105 d~~e~i~~~~~~~~L~~~~~~~~vll~ep~~~~~~~r~~~~e---E~~~ 150 (445)
|.++.|=+|+| ..+++||||+.-...+..+++++++ |.||
T Consensus 76 ~v~~aIk~~AF------~~s~yPvIlslE~Hcs~~qQ~~ma~il~~~lG 118 (257)
T cd08591 76 DVIEAIAETAF------KTSEYPVILSFENHCSSKQQAKMAEYCREIFG 118 (257)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHH
Confidence 55666667777 3688999999999999999999998 8888
No 103
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=29.24 E-value=1.2e+02 Score=29.99 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=25.1
Q ss_pred cCCCCeecCHHHHHHHHHHHhcc---ccCCCCCCCcEEEecC
Q 037470 95 PLKDGVVVDWDIVDSIWDHAFRE---CLLIDPKEHPMLLAEP 133 (445)
Q Consensus 95 P~~~g~i~d~d~~e~i~~~~~~~---~L~~~~~~~~vll~ep 133 (445)
-+.+|.|.|.+.+...++.++.+ .++++.+ .|+++.|
T Consensus 37 gi~~G~I~d~~~~~~~i~~al~~~e~~~~~~i~--~v~~~v~ 76 (371)
T TIGR01174 37 GIKKGVINDIEAAVGSIQRAIEAAELMAGCEIR--SVIVSIS 76 (371)
T ss_pred CccCcEEEcHHHHHHHHHHHHHHHHHHhCCccc--EEEEEEc
Confidence 47899999999988888888842 2454432 3444443
No 104
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=28.76 E-value=72 Score=29.33 Aligned_cols=40 Identities=25% Similarity=0.384 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhccccCCCCCCCcEEEecCCCCCHHHHHHHhc---cccC
Q 037470 105 DIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNTQQQRESSAF---SFWV 150 (445)
Q Consensus 105 d~~e~i~~~~~~~~L~~~~~~~~vll~ep~~~~~~~r~~~~e---E~~~ 150 (445)
|.++.|=+|+| ..+++||||+.....+.++++++++ |.||
T Consensus 74 dv~~~I~~~aF------~~s~yPvIlslE~Hcs~~qQ~~ma~il~~~lG 116 (229)
T cd08592 74 DVLKTIKEHAF------VTSEYPVILSIENHCSLPQQRNMAQAFKEVFG 116 (229)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHh
Confidence 55666777777 3688999999999999999999998 8888
No 105
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=28.29 E-value=73 Score=29.33 Aligned_cols=40 Identities=20% Similarity=0.215 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhccccCCCCCCCcEEEecCCCCCHHHHHHHhc---cccC
Q 037470 105 DIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNTQQQRESSAF---SFWV 150 (445)
Q Consensus 105 d~~e~i~~~~~~~~L~~~~~~~~vll~ep~~~~~~~r~~~~e---E~~~ 150 (445)
|.++.|=+|+| ..+++||||+.....+.++++++++ +.||
T Consensus 74 dv~~~Ik~~aF------~~s~yPvILslE~Hcs~~qQ~~ma~~l~~~lG 116 (231)
T cd08598 74 DVCRAIKKYAF------VTSPYPLILSLEVHCDAEQQERMVEIMKETFG 116 (231)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHH
Confidence 55666777777 3578999999999999999999988 8888
No 106
>PF03612 EIIBC-GUT_N: Sorbitol phosphotransferase enzyme II N-terminus; InterPro: IPR011618 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The Gut family consists only of glucitol-specific permeases, but these occur both in Gram-negative and Gram-positive bacteria. Escherichia coli consists of IIA protein, a IIC protein and a IIBC protein. This entry represents the N-terminal conserved region of the IIBC component.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=28.28 E-value=33 Score=30.11 Aligned_cols=27 Identities=37% Similarity=0.755 Sum_probs=21.5
Q ss_pred CCCCcEEEeCCCceeEeeecCCCCCCcccCcc
Q 037470 5 DEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSV 36 (445)
Q Consensus 5 ~~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~ 36 (445)
++...+|||+|. +.|+|. +|+.-+||+
T Consensus 61 eEi~~vVIDCGG-TlRCGi----YPkK~IpTI 87 (183)
T PF03612_consen 61 EEIACVVIDCGG-TLRCGI----YPKKRIPTI 87 (183)
T ss_pred HHeEEEEEecCC-ceeecc----ccccCCcee
Confidence 345679999995 789987 788888886
No 107
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=27.30 E-value=84 Score=30.76 Aligned_cols=51 Identities=25% Similarity=0.393 Sum_probs=35.9
Q ss_pred ccccCCCCchhhHHHHHHHHHhhhCCCCceEEEEecCCCCCccceeEeeeEEeec
Q 037470 364 ILLAGGTASMQQLKERLEKDLLEESPQAARVKVVSSGNATERRFSVWIGGSILAS 418 (445)
Q Consensus 364 IvLtGG~s~i~Gl~~RL~~eL~~~~p~~~~v~v~~~~~~~~~~~~~W~Gasilas 418 (445)
|+|+|-.+.+|.|.+-|...|...++ +++.......-..-.+-.|++++|+
T Consensus 264 IilSGr~~~~~~~~~~l~~~l~~~~~----~~v~~l~~~~~~aKeaA~GaAiIA~ 314 (343)
T PF07318_consen 264 IILSGRFSRIPEFRKKLEDRLEDYFP----VKVRKLEGLARKAKEAAQGAAIIAN 314 (343)
T ss_pred EEEeccccccHHHHHHHHHHHHhhcc----cceeecccccccchhhhhhHHHHhh
Confidence 99999999999999999999998875 3333210001112346678888887
No 108
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=26.77 E-value=1.5e+02 Score=22.62 Aligned_cols=47 Identities=21% Similarity=0.087 Sum_probs=31.8
Q ss_pred EEEEEcCCCceEEEEee-cceecCccceEecccHHHHHHHHHHHHHhc
Q 037470 179 SLVVDCGGGSTTVAPVH-DGYVLQKGVTTSPIGGEFLTNCLMKSLESK 225 (445)
Q Consensus 179 glVVDiG~~~t~v~pV~-~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~ 225 (445)
-|.||+|...+.++-+- +|.++........-+...+-+.+.+++.+.
T Consensus 3 ilgiD~Ggt~i~~a~~d~~g~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 50 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDETGKLADPLEVIPRTNKEADAARLKKLIKKY 50 (99)
T ss_pred EEEEccCCCeEEEEEECCCCCEecCEEEEEecCcchHHHHHHHHHHHh
Confidence 47899999888888774 777776433222224566677777777663
No 109
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=26.40 E-value=80 Score=29.67 Aligned_cols=40 Identities=20% Similarity=0.319 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhccccCCCCCCCcEEEecCCCCCHHHHHHHhc---cccC
Q 037470 105 DIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNTQQQRESSAF---SFWV 150 (445)
Q Consensus 105 d~~e~i~~~~~~~~L~~~~~~~~vll~ep~~~~~~~r~~~~e---E~~~ 150 (445)
|.++.|=+|+| ..+++||||+.....+.++++++++ +.||
T Consensus 74 dv~~~I~~~aF------~~s~yPvIlslE~Hc~~~qQ~~~a~~l~~~lG 116 (260)
T cd08597 74 SVIEAINEYAF------VASEYPLILCIENHCSEKQQLVMAQYLKEIFG 116 (260)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHH
Confidence 55666777777 3578999999999999999999998 8888
No 110
>PRK09698 D-allose kinase; Provisional
Probab=25.74 E-value=44 Score=31.96 Aligned_cols=68 Identities=28% Similarity=0.359 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHhCCHHhHHHHhcCccccCCCCchhh-HHHHHHHHHhhhCCC---CceEEEEecCCCCCccceeEeeeEE
Q 037470 340 GLPQMVIDSINKCDVDIRRELFSSILLAGGTASMQQ-LKERLEKDLLEESPQ---AARVKVVSSGNATERRFSVWIGGSI 415 (445)
Q Consensus 340 ~L~~~I~~~i~~~~~d~r~~L~~nIvLtGG~s~i~G-l~~RL~~eL~~~~p~---~~~v~v~~~~~~~~~~~~~W~Gasi 415 (445)
.|...|.+.+.-++++. |||.||.+..+. +.++|++++++.+.. ..++++..+ .-...+.-+||..
T Consensus 223 ~la~~l~~li~~ldP~~-------IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~---~~~~~a~~~GAa~ 292 (302)
T PRK09698 223 NLARAIATSINLFDPDA-------IILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYA---SSSDFNGAQGAAI 292 (302)
T ss_pred HHHHHHHHHHHHhCCCE-------EEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEEC---CcCCcccHHhHHH
Confidence 46666777666666643 788888776544 578888888876531 223444442 2223445567765
Q ss_pred ee
Q 037470 416 LA 417 (445)
Q Consensus 416 la 417 (445)
++
T Consensus 293 ~~ 294 (302)
T PRK09698 293 LA 294 (302)
T ss_pred HH
Confidence 53
No 111
>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins. This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki
Probab=24.92 E-value=93 Score=28.57 Aligned_cols=40 Identities=20% Similarity=0.337 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhccccCCCCCCCcEEEecCCCCCHHHHHHHhc---cccC
Q 037470 105 DIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNTQQQRESSAF---SFWV 150 (445)
Q Consensus 105 d~~e~i~~~~~~~~L~~~~~~~~vll~ep~~~~~~~r~~~~e---E~~~ 150 (445)
|.++.|=+++|. .+++||+|+.....+.++++++++ +.||
T Consensus 74 dv~~~Ik~~aF~------~s~yPvILslE~Hcs~~qQ~~ma~~l~~~lG 116 (226)
T cd08558 74 DVIEAIKEYAFV------TSPYPVILSLENHCSLEQQKKMAQILKEIFG 116 (226)
T ss_pred HHHHHHHHHhcc------cCCCCeEEEEecCCCHHHHHHHHHHHHHHHh
Confidence 556777777773 578999999999999999999988 8888
No 112
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=24.46 E-value=62 Score=19.41 Aligned_cols=21 Identities=14% Similarity=0.308 Sum_probs=15.2
Q ss_pred cccCCCCchhhHHHHHHHHHhhh
Q 037470 365 LLAGGTASMQQLKERLEKDLLEE 387 (445)
Q Consensus 365 vLtGG~s~i~Gl~~RL~~eL~~~ 387 (445)
|=|||.| |-|..+|++||...
T Consensus 9 ISTnG~s--P~la~~iR~~ie~~ 29 (30)
T PF14824_consen 9 ISTNGKS--PRLARLIRKEIERL 29 (30)
T ss_dssp EEESSS---HHHHHHHHHHHHHH
T ss_pred EECCCCC--hHHHHHHHHHHHHh
Confidence 4467766 88889999888754
No 113
>cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 2. PI-PLC is a signaling enzyme that hydrolyze the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=23.38 E-value=1e+02 Score=28.81 Aligned_cols=40 Identities=30% Similarity=0.410 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhccccCCCCCCCcEEEecCCCCCHHHHHHHhc---cccC
Q 037470 105 DIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNTQQQRESSAF---SFWV 150 (445)
Q Consensus 105 d~~e~i~~~~~~~~L~~~~~~~~vll~ep~~~~~~~r~~~~e---E~~~ 150 (445)
|.++.|=+|+| ..+++||+|+.-...+.++++++++ +.||
T Consensus 74 dv~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lG 116 (254)
T cd08628 74 DVVQAIKDHAF------VTSEYPVILSIEEHCSVEQQRHMAKVFKEVFG 116 (254)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEeccCCHHHHHHHHHHHHHHHh
Confidence 55667777777 3578999999999999999999998 8888
No 114
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=23.17 E-value=1.2e+02 Score=28.99 Aligned_cols=47 Identities=21% Similarity=0.280 Sum_probs=34.5
Q ss_pred EEEEEcCCCceEEEEeecceecCccceEecccHH---HHHHHHHHHHHhcCC
Q 037470 179 SLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGE---FLTNCLMKSLESKGI 227 (445)
Q Consensus 179 glVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~---~lt~~l~~~l~~~~~ 227 (445)
-+=||+|+.+|-++.+.+|.++.. ...+-|++ ...+.|.+++.+.+.
T Consensus 34 ~~GIDiGStt~K~Vlld~~~i~~~--~~~~tg~~~~~~a~~~l~~~l~~~g~ 83 (293)
T TIGR03192 34 TCGIDVGSVSSQAVLVCDGELYGY--NSMRTGNNSPDSAKNALQGIMDKIGM 83 (293)
T ss_pred EEEEEeCchhEEEEEEeCCEEEEE--EeecCCCCHHHHHHHHHHHHHHHcCC
Confidence 456899999999999988866554 34566653 566778888877663
No 115
>PF09693 Phage_XkdX: Phage uncharacterised protein (Phage_XkdX); InterPro: IPR010022 This entry is represented by Bacteriophage 69, Orf86. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry identifies a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=22.87 E-value=45 Score=21.38 Aligned_cols=17 Identities=35% Similarity=0.773 Sum_probs=11.5
Q ss_pred cccccc-ccccHHHHHHc
Q 037470 419 LGSFQQ-MWFSKSEYEEH 435 (445)
Q Consensus 419 l~~f~~-~~itr~eY~E~ 435 (445)
+..|-. -|||++||+|-
T Consensus 18 v~~~V~~g~IT~eey~eI 35 (40)
T PF09693_consen 18 VKNFVEAGWITKEEYKEI 35 (40)
T ss_pred HHHHhhcCeECHHHHHHh
Confidence 344433 39999999873
No 116
>cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=22.16 E-value=1.1e+02 Score=28.64 Aligned_cols=40 Identities=20% Similarity=0.341 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhccccCCCCCCCcEEEecCCCC-CHHHHHHHhc---cccC
Q 037470 105 DIVDSIWDHAFRECLLIDPKEHPMLLAEPSSN-TQQQRESSAF---SFWV 150 (445)
Q Consensus 105 d~~e~i~~~~~~~~L~~~~~~~~vll~ep~~~-~~~~r~~~~e---E~~~ 150 (445)
|.++.|=+|+| ..+++||||+.-... +..+++++++ |.||
T Consensus 76 dv~~~I~~~AF------~~S~yPvIlSlE~Hc~s~~qQ~~ma~~l~~~lG 119 (258)
T cd08623 76 EVIEAIAECAF------KTSPFPILLSFENHVDSPKQQAKMAEYCRLIFG 119 (258)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEehhcCCCHHHHHHHHHHHHHHHh
Confidence 55667777777 368899999999888 5788888888 8888
No 117
>cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=21.85 E-value=1.1e+02 Score=28.68 Aligned_cols=40 Identities=20% Similarity=0.347 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhccccCCCCCCCcEEEecCCCC-CHHHHHHHhc---cccC
Q 037470 105 DIVDSIWDHAFRECLLIDPKEHPMLLAEPSSN-TQQQRESSAF---SFWV 150 (445)
Q Consensus 105 d~~e~i~~~~~~~~L~~~~~~~~vll~ep~~~-~~~~r~~~~e---E~~~ 150 (445)
|.++.|=+|+|. .+++||||+.-... +..+++++++ |.||
T Consensus 76 dv~~~I~~~AF~------~s~yPvIlslE~Hc~s~~qQ~~ma~~l~~~lG 119 (261)
T cd08624 76 DAIEAIAESAFK------TSPYPVILSFENHVDSPKQQAKMAEYCRTIFG 119 (261)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEehhcCCCHHHHHHHHHHHHHHHh
Confidence 556677777773 58999999998887 6788888888 8888
No 118
>PRK13333 pantothenate kinase; Reviewed
Probab=21.20 E-value=1.1e+02 Score=27.59 Aligned_cols=30 Identities=27% Similarity=0.442 Sum_probs=20.0
Q ss_pred chhhhhhhccCCceEEEEEcCCCceEEEEeecc
Q 037470 165 DALVLTSFALGRATSLVVDCGGGSTTVAPVHDG 197 (445)
Q Consensus 165 ~~~~la~~~~g~~tglVVDiG~~~t~v~pV~~G 197 (445)
..-++++++. ..++|||+|...| +..|.+|
T Consensus 74 vDR~~a~~aa--~~~lVIDaGTAiT-iDvv~~g 103 (206)
T PRK13333 74 IDRIAACYAI--EDGVVVDAGSAIT-VDIMSNG 103 (206)
T ss_pred HHHHHHhccC--CCeEEEEcCCceE-EEEEcCC
Confidence 3445666665 4799999999854 5555554
No 119
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=21.17 E-value=54 Score=33.43 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCceEEEEeecceec
Q 037470 177 ATSLVVDCGGGSTTVAPVHDGYVL 200 (445)
Q Consensus 177 ~tglVVDiG~~~t~v~pV~~G~~~ 200 (445)
..-++||||..+|+|-.+.+|.+-
T Consensus 249 g~ll~VDIGGATTDvhSv~~g~~~ 272 (463)
T TIGR01319 249 GDFILIDIGGATTDVHSAAAGELS 272 (463)
T ss_pred CCEEEEEcCccccchhhccCCCcc
Confidence 457999999999999999999665
No 120
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=21.06 E-value=1.4e+02 Score=30.07 Aligned_cols=50 Identities=22% Similarity=0.297 Sum_probs=35.4
Q ss_pred eEEEEEcCCCceEEEEeecceecCccceEecccHHHHHHHHHHHHHhcCC
Q 037470 178 TSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKSLESKGI 227 (445)
Q Consensus 178 tglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~ 227 (445)
--+=||+|+.+|-++-+.++.++.....+...--..+.+.+.++|.+.+.
T Consensus 145 ~~lGIDiGSTttK~Vl~dd~~Ii~~~~~~t~~~~~~a~~~l~~~l~~~Gl 194 (404)
T TIGR03286 145 LTLGIDSGSTTTKAVVMEDNEVIGTGWVPTTKVIESAEEAVERALEEAGV 194 (404)
T ss_pred EEEEEEcChhheeeEEEcCCeEEEEEEeecccHHHHHHHHHHHHHHHcCC
Confidence 34567999999999999888777665544322245666777777877664
No 121
>TIGR01669 phage_XkdX phage uncharacterized protein, XkdX family. This model represents a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=20.82 E-value=53 Score=21.73 Aligned_cols=17 Identities=12% Similarity=0.382 Sum_probs=11.8
Q ss_pred cccccc-ccccHHHHHHc
Q 037470 419 LGSFQQ-MWFSKSEYEEH 435 (445)
Q Consensus 419 l~~f~~-~~itr~eY~E~ 435 (445)
+..|-. .|||++||+|-
T Consensus 23 v~~~V~~~~IT~eey~eI 40 (45)
T TIGR01669 23 VNKFVEKKLITREQYKVI 40 (45)
T ss_pred HHHHhhcCccCHHHHHHH
Confidence 344533 49999999873
No 122
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=20.33 E-value=5.3e+02 Score=23.64 Aligned_cols=85 Identities=15% Similarity=0.176 Sum_probs=51.5
Q ss_pred CCCeecCHHHHHHHHHHHhccccCCCCCCCcEEEecCCCCCHHHHHHHhccccCccCCeeeccceE-EechhhhhhhccC
Q 037470 97 KDGVVVDWDIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNTQQQRESSAFSFWVCVCGILVFCPVI-EFDALVLTSFALG 175 (445)
Q Consensus 97 ~~g~i~d~d~~e~i~~~~~~~~L~~~~~~~~vll~ep~~~~~~~r~~~~eE~~~~~~~~~~~~p~v-~~~~~~la~~~~g 175 (445)
+--.+.||+.++...+.+ +.++++.....|+-+.-..++......+. .++| +-+| +--.+ +|+..
T Consensus 125 df~~~ad~~Ll~~a~~~A--~e~gi~~hvgnv~ssD~FY~~~~~~~~~~-~~~g--------vlaVeMEaaa---lY~~A 190 (236)
T COG0813 125 DFAPIADFELLEKAYETA--KELGIDTHVGNVFSSDLFYNPDTEMFDLM-AKYG--------VLAVEMEAAA---LYAVA 190 (236)
T ss_pred cccccCCHHHHHHHHHHH--HHhCCceeeeeeeeeecccCCCHHHHHHH-HHhC--------CcEEEeeHHH---HHHHH
Confidence 334567999999988877 67777766555666555555654333333 7888 8888 76544 44332
Q ss_pred CceEEEEEcCCCceEEEEeecceecC
Q 037470 176 RATSLVVDCGGGSTTVAPVHDGYVLQ 201 (445)
Q Consensus 176 ~~tglVVDiG~~~t~v~pV~~G~~~~ 201 (445)
. ..|.....++-|.|..+..
T Consensus 191 ~------~~~~~Al~ilTVSD~l~t~ 210 (236)
T COG0813 191 A------EYGKKALTILTVSDHLVTG 210 (236)
T ss_pred H------HhCcceEEEEEeeccccCc
Confidence 1 1334455666666664444
Done!