BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037473
(150 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 63/100 (63%), Gaps = 13/100 (13%)
Query: 1 MDEGMQVMAVNCYPPCPQPDIAFGLPPHSDYSCLTIVLQSS-EGLEFL--GKEDESW--- 54
++E + M +N YP CPQP++A G+ H+D S LT +L + GL+ GK W
Sbjct: 205 LEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGK----WVTA 260
Query: 55 RKVPN---VHVGDHLEVLSNGIYKSVVHRATLNHERTRIS 91
+ VP+ +H+GD LE+LSNG YKS++HR +N E+ RIS
Sbjct: 261 KCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRIS 300
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 63/100 (63%), Gaps = 13/100 (13%)
Query: 1 MDEGMQVMAVNCYPPCPQPDIAFGLPPHSDYSCLTIVLQSS-EGLEFL--GKEDESW--- 54
++E + M +N YP CPQP++A G+ H+D S LT +L + GL+ GK W
Sbjct: 204 LEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGK----WVTA 259
Query: 55 RKVPN---VHVGDHLEVLSNGIYKSVVHRATLNHERTRIS 91
+ VP+ +H+GD LE+LSNG YKS++HR +N E+ RIS
Sbjct: 260 KCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRIS 299
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 76.3 bits (186), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 61/100 (61%), Gaps = 13/100 (13%)
Query: 1 MDEGMQVMAVNCYPPCPQPDIAFGLPPHSDYSCLTIVLQSS-EGLEFL--GKEDESW--- 54
++E + +N YP CPQP++A G+ H+D S LT +L + GL+ GK W
Sbjct: 205 LEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFILHNXVPGLQLFYEGK----WVTA 260
Query: 55 RKVPN---VHVGDHLEVLSNGIYKSVVHRATLNHERTRIS 91
+ VP+ H+GD LE+LSNG YKS++HR +N E+ RIS
Sbjct: 261 KCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRIS 300
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 10/92 (10%)
Query: 10 VNCYPPCPQPDIAFGLPPHSDYSCLTIVLQSSE--GLEFLGKEDESWRKVPN------VH 61
V+ YPPCP+PD+ GL H+D + ++ Q + GL+ L +D W VP V+
Sbjct: 159 VSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLL--KDGQWIDVPPXRHSIVVN 216
Query: 62 VGDHLEVLSNGIYKSVVHRATLNHERTRISIT 93
+GD LEV++NG YKSV HR + R S+
Sbjct: 217 LGDQLEVITNGKYKSVXHRVIAQKDGARXSLA 248
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 1 MDEGMQVMAVNCYPPCPQPDIAFGLPPHSDYSCLTIVLQSSE-GLEFLGKEDESWRKV-- 57
+ +G V+ + YPP P+ H D + +T++L + E GLE L + D W +
Sbjct: 164 VQDGNSVLRLLHYPPIPKDATGVRAGAHGDINTITLLLGAEEGGLEVLDR-DGQWLPINP 222
Query: 58 -PN---VHVGDHLEVLSNGIYKSVVHR 80
P +++GD LE L+N + S VHR
Sbjct: 223 PPGCLVINIGDXLERLTNNVLPSTVHR 249
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 33.5 bits (75), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 14/99 (14%)
Query: 7 VMAVNCYPPCP--QPDIAFGLPPHSDYSCLTIVLQSSE-GLEFLGKEDESWRKVPN---- 59
++ + YPP + A H D + +T++ ++E GL+ K D SW VP+
Sbjct: 151 LLRILHYPPXTGDEEXGAIRAAAHEDINLITVLPTANEPGLQVKAK-DGSWLDVPSDFGN 209
Query: 60 --VHVGDHLEVLSNGIYKSVVHRAT----LNHERTRISI 92
+++GD L+ S+G + S HR + ++RIS+
Sbjct: 210 IIINIGDXLQEASDGYFPSTSHRVINPEGTDKTKSRISL 248
>pdb|1UKS|A Chain A, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
pdb|1UKS|B Chain B, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
Length = 686
Score = 28.1 bits (61), Expect = 2.0, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 63 GDHLEVLSNGIYKSVVHRATLNHERTRISI 92
G L + NGIYK++ A LNH + + +
Sbjct: 180 GTDLSTIENGIYKNLYDLADLNHNNSSVDV 209
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 14/73 (19%)
Query: 28 HSDYSCLTIVLQS---------SEGLEFLGKEDESWRKVPNVHVGDHLEVLSNGIYKSVV 78
H D S +T++ QS + G + + +D + ++ G ++ L+N YK+ +
Sbjct: 214 HEDVSLITVLYQSNVQNLQVETAAGYQDIEADDTGYL----INCGSYMAHLTNNYYKAPI 269
Query: 79 HRAT-LNHERTRI 90
HR +N ER +
Sbjct: 270 HRVKWVNAERQSL 282
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 14/73 (19%)
Query: 28 HSDYSCLTIVLQS---------SEGLEFLGKEDESWRKVPNVHVGDHLEVLSNGIYKSVV 78
H D S +T++ QS + G + + +D + ++ G ++ L+N YK+ +
Sbjct: 214 HEDVSLITVLYQSNVQNLQVETAAGYQDIEADDTGYL----INCGSYMAHLTNNYYKAPI 269
Query: 79 HRAT-LNHERTRI 90
HR +N ER +
Sbjct: 270 HRVKWVNAERQSL 282
>pdb|1V3J|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3J|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3L|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
pdb|1V3L|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
Length = 686
Score = 26.6 bits (57), Expect = 5.5, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 63 GDHLEVLSNGIYKSVVHRATLNHERTRISI 92
G + NGIYK++ A LNH + + +
Sbjct: 180 GTDFSTIENGIYKNLYDLADLNHNNSSVDV 209
>pdb|1V3K|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3K|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3M|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
pdb|1V3M|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
Length = 686
Score = 26.6 bits (57), Expect = 5.5, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 63 GDHLEVLSNGIYKSVVHRATLNHERTRISI 92
G + NGIYK++ A LNH + + +
Sbjct: 180 GTDFSTIENGIYKNLYDLADLNHNNSSVDV 209
>pdb|1UKT|A Chain A, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
pdb|1UKT|B Chain B, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
Length = 686
Score = 26.6 bits (57), Expect = 5.5, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 63 GDHLEVLSNGIYKSVVHRATLNHERTRISI 92
G + NGIYK++ A LNH + + +
Sbjct: 180 GTDFSTIENGIYKNLYDLADLNHNNSSVDV 209
>pdb|1D7F|A Chain A, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1D7F|B Chain B, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1DED|A Chain A, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
pdb|1DED|B Chain B, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
Length = 686
Score = 26.6 bits (57), Expect = 5.5, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 63 GDHLEVLSNGIYKSVVHRATLNHERTRISI 92
G + NGIYK++ A LNH + + +
Sbjct: 180 GTDFSTIENGIYKNLYDLADLNHNNSSVDV 209
>pdb|1PAM|A Chain A, Cyclodextrin Glucanotransferase
pdb|1PAM|B Chain B, Cyclodextrin Glucanotransferase
pdb|1I75|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1I75|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1UKQ|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
pdb|1UKQ|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
Length = 686
Score = 26.6 bits (57), Expect = 5.5, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 63 GDHLEVLSNGIYKSVVHRATLNHERTRISI 92
G + NGIYK++ A LNH + + +
Sbjct: 180 GTDFSTIENGIYKNLYDLADLNHNNSSVDV 209
>pdb|2FUG|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|C Chain C, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|L Chain L, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|U Chain U, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|3I9V|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3I9V|C Chain C, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3IAM|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAM|C Chain C, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAS|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|C Chain C, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|L Chain L, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|U Chain U, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3M9S|3 Chain 3, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|3M9S|C Chain C, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|2YBB|3 Chain 3, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|4HEA|3 Chain 3, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
pdb|4HEA|D Chain D, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
Length = 783
Score = 26.6 bits (57), Expect = 6.2, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
Query: 27 PHSDYSCLTIVLQSSEGLEFLGKEDESWRKVPNVHVGDHLEVLSNGIYKSVV--HRATLN 84
P + L +L EG E + K E+W K N + +L G+ + V RA L
Sbjct: 470 PGEEREILLALLGDKEGSEMVAKAKEAWEKAKN-----PVLILGAGVLQDTVAAERARLL 524
Query: 85 HER 87
ER
Sbjct: 525 AER 527
>pdb|1CGX|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 26.2 bits (56), Expect = 7.4, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 63 GDHLEVLSNGIYKSVVHRATLNHERTRISI 92
G NGIYK+++ A LNH + + +
Sbjct: 180 GTDFSTTENGIYKNLLDLADLNHNNSTVDV 209
>pdb|1KCL|A Chain A, Bacillus Ciruclans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant G179l
Length = 686
Score = 25.8 bits (55), Expect = 8.9, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 61 HVGDHLEVLSNGIYKSVVHRATLNHERTRISI 92
++G NGIYK++ A LNH + + +
Sbjct: 178 NLGTDFSTTENGIYKNLYDLADLNHNNSTVDV 209
>pdb|1KQN|A Chain A, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Nad
pdb|1KQN|B Chain B, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Nad
pdb|1KQN|C Chain C, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Nad
pdb|1KQN|D Chain D, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Nad
pdb|1KQN|E Chain E, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Nad
pdb|1KQN|F Chain F, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Nad
pdb|1KQO|A Chain A, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Deamido-Nad
pdb|1KQO|B Chain B, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Deamido-Nad
pdb|1KQO|C Chain C, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Deamido-Nad
pdb|1KQO|D Chain D, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Deamido-Nad
pdb|1KQO|E Chain E, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Deamido-Nad
pdb|1KQO|F Chain F, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Deamido-Nad
pdb|1KR2|A Chain A, Crystal Structure Of Human NmnNAMN ADENYLYL TRANSFERASE
Complexed With Tiazofurin Adenine Dinucleotide (Tad)
pdb|1KR2|B Chain B, Crystal Structure Of Human NmnNAMN ADENYLYL TRANSFERASE
Complexed With Tiazofurin Adenine Dinucleotide (Tad)
pdb|1KR2|C Chain C, Crystal Structure Of Human NmnNAMN ADENYLYL TRANSFERASE
Complexed With Tiazofurin Adenine Dinucleotide (Tad)
pdb|1KR2|D Chain D, Crystal Structure Of Human NmnNAMN ADENYLYL TRANSFERASE
Complexed With Tiazofurin Adenine Dinucleotide (Tad)
pdb|1KR2|E Chain E, Crystal Structure Of Human NmnNAMN ADENYLYL TRANSFERASE
Complexed With Tiazofurin Adenine Dinucleotide (Tad)
pdb|1KR2|F Chain F, Crystal Structure Of Human NmnNAMN ADENYLYL TRANSFERASE
Complexed With Tiazofurin Adenine Dinucleotide (Tad)
Length = 279
Score = 25.8 bits (55), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 29 SDYSCLTIVLQSSEGLEFLGKEDESWRKVPNVHVGDHLEVLSNGIYKSVVHRA 81
++Y + + ++ +F+ + D W+ N+HV + E ++N I + + RA
Sbjct: 179 ANYGLICVTRAGNDAQKFIYESDVLWKHRSNIHVVN--EWIANDISSTKIRRA 229
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,319,478
Number of Sequences: 62578
Number of extensions: 148899
Number of successful extensions: 336
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 302
Number of HSP's gapped (non-prelim): 34
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)