BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037475
(98 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A6N|D Chain D, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
pdb|3A6N|H Chain H, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
pdb|3AFA|D Chain D, The Human Nucleosome Structure
pdb|3AFA|H Chain H, The Human Nucleosome Structure
pdb|3AV1|D Chain D, The Human Nucleosome Structure Containing The Histone
Variant H3.2
pdb|3AV1|H Chain H, The Human Nucleosome Structure Containing The Histone
Variant H3.2
pdb|3AV2|D Chain D, The Human Nucleosome Structure Containing The Histone
Variant H3.3
pdb|3AV2|H Chain H, The Human Nucleosome Structure Containing The Histone
Variant H3.3
pdb|3AYW|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
pdb|3AYW|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
pdb|3AZE|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
pdb|3AZE|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
pdb|3AZF|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
pdb|3AZF|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
pdb|3AZG|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
pdb|3AZG|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
pdb|3AZH|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
pdb|3AZH|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
pdb|3AZI|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
pdb|3AZI|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
pdb|3AZJ|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
pdb|3AZJ|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
pdb|3AZK|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
pdb|3AZK|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
pdb|3AZL|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
pdb|3AZL|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
pdb|3AZM|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
pdb|3AZM|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
pdb|3AZN|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
pdb|3AZN|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
Length = 129
Score = 102 bits (254), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 61/85 (71%), Gaps = 13/85 (15%)
Query: 26 IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIV 72
IY++KVL Q++ D GISSKAMGIMN+ SRLA Y K+ TITSREIQT V
Sbjct: 43 IYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAV 102
Query: 73 RLVLLGELAKHVASEGTKAVTKFAS 97
RL+L GELAKH SEGTKAVTK+ S
Sbjct: 103 RLLLPGELAKHAVSEGTKAVTKYTS 127
>pdb|2HIO|B Chain B, Histone Octamer (Chicken), Chromosomal Protein
Length = 125
Score = 102 bits (254), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 61/85 (71%), Gaps = 13/85 (15%)
Query: 26 IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIV 72
IY++KVL Q++ D GISSKAMGIMN+ SRLA Y K+ TITSREIQT V
Sbjct: 39 IYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAV 98
Query: 73 RLVLLGELAKHVASEGTKAVTKFAS 97
RL+L GELAKH SEGTKAVTK+ S
Sbjct: 99 RLLLPGELAKHAVSEGTKAVTKYTS 123
>pdb|1EQZ|B Chain B, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1EQZ|F Chain F, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1HQ3|B Chain B, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1HQ3|F Chain F, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1TZY|B Chain B, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|1TZY|F Chain F, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|2ARO|B Chain B, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
pdb|2ARO|F Chain F, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
Length = 126
Score = 102 bits (254), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 61/85 (71%), Gaps = 13/85 (15%)
Query: 26 IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIV 72
IY++KVL Q++ D GISSKAMGIMN+ SRLA Y K+ TITSREIQT V
Sbjct: 40 IYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAV 99
Query: 73 RLVLLGELAKHVASEGTKAVTKFAS 97
RL+L GELAKH SEGTKAVTK+ S
Sbjct: 100 RLLLPGELAKHAVSEGTKAVTKYTS 124
>pdb|1U35|D Chain D, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
pdb|1U35|H Chain H, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
pdb|2F8N|D Chain D, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
Length = 126
Score = 102 bits (253), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 61/85 (71%), Gaps = 13/85 (15%)
Query: 26 IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIV 72
IY++KVL Q++ D GISSKAMGIMN+ SRLA Y K+ TITSRE+QT V
Sbjct: 40 IYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAV 99
Query: 73 RLVLLGELAKHVASEGTKAVTKFAS 97
RL+L GELAKH SEGTKAVTK+ S
Sbjct: 100 RLLLPGELAKHAVSEGTKAVTKYTS 124
>pdb|2CV5|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
pdb|2CV5|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Length = 126
Score = 102 bits (253), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 61/85 (71%), Gaps = 13/85 (15%)
Query: 26 IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIV 72
+Y++KVL Q++ D GISSKAMGIMN+ SRLA Y K+ TITSREIQT V
Sbjct: 40 VYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAV 99
Query: 73 RLVLLGELAKHVASEGTKAVTKFAS 97
RL+L GELAKH SEGTKAVTK+ S
Sbjct: 100 RLLLPGELAKHAVSEGTKAVTKYTS 124
>pdb|2XQL|B Chain B, Fitting Of The H2a-H2b Histones In The Electron
Microscopy Map Of The Complex Nucleoplasmin:h2a-H2b
Histones (1:5).
pdb|2XQL|D Chain D, Fitting Of The H2a-H2b Histones In The Electron
Microscopy Map Of The Complex Nucleoplasmin:h2a-H2b
Histones (1:5).
pdb|2XQL|F Chain F, Fitting Of The H2a-H2b Histones In The Electron
Microscopy Map Of The Complex Nucleoplasmin:h2a-H2b
Histones (1:5).
pdb|2XQL|H Chain H, Fitting Of The H2a-H2b Histones In The Electron
Microscopy Map Of The Complex Nucleoplasmin:h2a-H2b
Histones (1:5).
pdb|2XQL|J Chain J, Fitting Of The H2a-H2b Histones In The Electron
Microscopy Map Of The Complex Nucleoplasmin:h2a-H2b
Histones (1:5)
Length = 90
Score = 101 bits (251), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 61/85 (71%), Gaps = 13/85 (15%)
Query: 26 IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIV 72
IY++KVL Q++ D GISSKAMGIMN+ SRLA Y K+ TITSREIQT V
Sbjct: 4 IYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAV 63
Query: 73 RLVLLGELAKHVASEGTKAVTKFAS 97
RL+L GELAKH SEGTKAVTK+ S
Sbjct: 64 RLLLPGELAKHAVSEGTKAVTKYTS 88
>pdb|1P34|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P34|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3A|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3A|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3B|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3B|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3K|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3K|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3L|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3L|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3M|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3M|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 125
Score = 100 bits (248), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 60/85 (70%), Gaps = 13/85 (15%)
Query: 26 IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIV 72
IY++KVL Q++ D GISSKAM IMN+ SRLA Y K+ TITSREIQT V
Sbjct: 39 IYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAV 98
Query: 73 RLVLLGELAKHVASEGTKAVTKFAS 97
RL+L GELAKH SEGTKAVTK+ S
Sbjct: 99 RLLLPGELAKHAVSEGTKAVTKYTS 123
>pdb|1KX3|D Chain D, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX3|H Chain H, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX4|D Chain D, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX4|H Chain H, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX5|D Chain D, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1KX5|H Chain H, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1M18|D Chain D, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M18|H Chain H, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|D Chain D, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|H Chain H, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|D Chain D, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|H Chain H, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1ZBB|D Chain D, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|H Chain H, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|DD Chain d, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|HH Chain h, Structure Of The 4_601_167 Tetranucleosome
pdb|2FJ7|D Chain D, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|2FJ7|H Chain H, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|2NZD|D Chain D, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|2NZD|H Chain H, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|3B6F|D Chain D, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6F|H Chain H, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6G|D Chain D, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3B6G|H Chain H, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3KUY|D Chain D, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3KUY|H Chain H, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3LEL|D Chain D, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|H Chain H, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|N Chain N, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|R Chain R, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3MGP|D Chain D, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGP|H Chain H, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGQ|D Chain D, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGQ|H Chain H, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGR|D Chain D, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGR|H Chain H, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGS|D Chain D, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3MGS|H Chain H, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3LZ0|D Chain D, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ0|H Chain H, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ1|D Chain D, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3LZ1|H Chain H, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3MNN|D Chain D, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3MNN|H Chain H, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3UT9|D Chain D, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UT9|H Chain H, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UTA|D Chain D, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTA|H Chain H, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTB|D Chain D, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
pdb|3UTB|H Chain H, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
Length = 125
Score = 100 bits (248), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 60/85 (70%), Gaps = 13/85 (15%)
Query: 26 IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIV 72
IY++KVL Q++ D GISSKAM IMN+ SRLA Y K+ TITSREIQT V
Sbjct: 39 IYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAV 98
Query: 73 RLVLLGELAKHVASEGTKAVTKFAS 97
RL+L GELAKH SEGTKAVTK+ S
Sbjct: 99 RLLLPGELAKHAVSEGTKAVTKYTS 123
>pdb|3C9K|B Chain B, Model Of Histone Octamer Tubular Crystals
pdb|3C9K|F Chain F, Model Of Histone Octamer Tubular Crystals
Length = 125
Score = 100 bits (248), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 60/85 (70%), Gaps = 13/85 (15%)
Query: 26 IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIV 72
IY++KVL Q++ D GISSKAM IMN+ SRLA Y K+ TITSREIQT V
Sbjct: 39 IYVYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAV 98
Query: 73 RLVLLGELAKHVASEGTKAVTKFAS 97
RL+L GELAKH SEGTKAVTK+ S
Sbjct: 99 RLLLPGELAKHAVSEGTKAVTKYTS 123
>pdb|1ZLA|D Chain D, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
pdb|1ZLA|H Chain H, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
Length = 125
Score = 100 bits (248), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 60/85 (70%), Gaps = 13/85 (15%)
Query: 26 IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIV 72
IY++KVL Q++ D GISSKAM IMN+ SRLA Y K+ TITSREIQT V
Sbjct: 39 IYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAV 98
Query: 73 RLVLLGELAKHVASEGTKAVTKFAS 97
RL+L GELAKH SEGTKAVTK+ S
Sbjct: 99 RLLLPGELAKHAVSEGTKAVTKYTS 123
>pdb|1F66|D Chain D, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
pdb|1F66|H Chain H, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
Length = 126
Score = 100 bits (248), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 60/85 (70%), Gaps = 13/85 (15%)
Query: 26 IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIV 72
IY++KVL Q++ D GISSKAM IMN+ SRLA Y K+ TITSREIQT V
Sbjct: 40 IYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAV 99
Query: 73 RLVLLGELAKHVASEGTKAVTKFAS 97
RL+L GELAKH SEGTKAVTK+ S
Sbjct: 100 RLLLPGELAKHAVSEGTKAVTKYTS 124
>pdb|3C1B|D Chain D, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1B|H Chain H, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1C|D Chain D, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1C|H Chain H, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
Length = 125
Score = 100 bits (248), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 60/85 (70%), Gaps = 13/85 (15%)
Query: 26 IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIV 72
IY++KVL Q++ D GISSKAM IMN+ SRLA Y K+ TITSREIQT V
Sbjct: 39 IYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAV 98
Query: 73 RLVLLGELAKHVASEGTKAVTKFAS 97
RL+L GELAKH SEGTKAVTK+ S
Sbjct: 99 RLLLPGELAKHAVSEGTKAVTKYTS 123
>pdb|2PYO|D Chain D, Drosophila Nucleosome Core
pdb|2PYO|H Chain H, Drosophila Nucleosome Core
Length = 122
Score = 100 bits (248), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 60/85 (70%), Gaps = 13/85 (15%)
Query: 26 IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIV 72
IYI+KVL Q++ D GISSKAM IMN+ SRLA Y K+ TITSREIQT V
Sbjct: 36 IYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAV 95
Query: 73 RLVLLGELAKHVASEGTKAVTKFAS 97
RL+L GELAKH SEGTKAVTK+ S
Sbjct: 96 RLLLPGELAKHAVSEGTKAVTKYTS 120
>pdb|1S32|D Chain D, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|1S32|H Chain H, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|3LJA|D Chain D, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3LJA|H Chain H, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3KXB|D Chain D, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
pdb|3KXB|H Chain H, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
pdb|3MVD|D Chain D, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|H Chain H, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3O62|D Chain D, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3O62|H Chain H, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3TU4|D Chain D, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3TU4|H Chain H, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3REH|D Chain D, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REH|H Chain H, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REI|D Chain D, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REI|H Chain H, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REJ|D Chain D, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REJ|H Chain H, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REK|D Chain D, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REK|H Chain H, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REL|D Chain D, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REL|H Chain H, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
Length = 122
Score = 99.8 bits (247), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 60/85 (70%), Gaps = 13/85 (15%)
Query: 26 IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIV 72
IY++KVL Q++ D GISSKAM IMN+ SRLA Y K+ TITSREIQT V
Sbjct: 36 IYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAV 95
Query: 73 RLVLLGELAKHVASEGTKAVTKFAS 97
RL+L GELAKH SEGTKAVTK+ S
Sbjct: 96 RLLLPGELAKHAVSEGTKAVTKYTS 120
>pdb|2F8N|H Chain H, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
Length = 123
Score = 99.8 bits (247), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 60/85 (70%), Gaps = 13/85 (15%)
Query: 26 IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIV 72
IY++KVL Q++ D GISSKAM IMN+ SRLA Y K+ TITSREIQT V
Sbjct: 37 IYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAV 96
Query: 73 RLVLLGELAKHVASEGTKAVTKFAS 97
RL+L GELAKH SEGTKAVTK+ S
Sbjct: 97 RLLLPGELAKHAVSEGTKAVTKYTS 121
>pdb|1AOI|D Chain D, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
pdb|1AOI|H Chain H, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
Length = 99
Score = 99.0 bits (245), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 60/85 (70%), Gaps = 13/85 (15%)
Query: 26 IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIV 72
IY++KVL Q++ D GISSKAM IMN+ SRLA Y K+ TITSREIQT V
Sbjct: 13 IYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAV 72
Query: 73 RLVLLGELAKHVASEGTKAVTKFAS 97
RL+L GELAKH SEGTKAVTK+ S
Sbjct: 73 RLLLPGELAKHAVSEGTKAVTKYTS 97
>pdb|3KWQ|D Chain D, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
pdb|3KWQ|H Chain H, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
Length = 93
Score = 99.0 bits (245), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 60/85 (70%), Gaps = 13/85 (15%)
Query: 26 IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIV 72
IY++KVL Q++ D GISSKAM IMN+ SRLA Y K+ TITSREIQT V
Sbjct: 7 IYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAV 66
Query: 73 RLVLLGELAKHVASEGTKAVTKFAS 97
RL+L GELAKH SEGTKAVTK+ S
Sbjct: 67 RLLLPGELAKHAVSEGTKAVTKYTS 91
>pdb|2NQB|D Chain D, Drosophila Nucleosome Structure
pdb|2NQB|H Chain H, Drosophila Nucleosome Structure
Length = 123
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 59/85 (69%), Gaps = 13/85 (15%)
Query: 26 IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIV 72
IYI+ VL Q++ D GISSKAM IMN+ SRLA Y K+ TITSREIQT V
Sbjct: 37 IYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAV 96
Query: 73 RLVLLGELAKHVASEGTKAVTKFAS 97
RL+L GELAKH SEGTKAVTK+ S
Sbjct: 97 RLLLPGELAKHAVSEGTKAVTKYTS 121
>pdb|3AN2|D Chain D, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
pdb|3AN2|H Chain H, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
Length = 129
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/85 (60%), Positives = 59/85 (69%), Gaps = 13/85 (15%)
Query: 26 IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIV 72
IY++KVL Q++ D GISSKA GI N+ SRLA Y K+ TITSREIQT V
Sbjct: 43 IYVYKVLKQVHPDTGISSKAXGIXNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAV 102
Query: 73 RLVLLGELAKHVASEGTKAVTKFAS 97
RL+L GELAKH SEGTKAVTK+ S
Sbjct: 103 RLLLPGELAKHAVSEGTKAVTKYTS 127
>pdb|1HIO|B Chain B, Histone Octamer (Chicken), Chromosomal Protein, Alpha
Carbons Only
Length = 90
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 59/85 (69%), Gaps = 13/85 (15%)
Query: 26 IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIV 72
IY++KVL Q++ D GISSKAMG MN+ SRLA Y K+ TITSREIQT V
Sbjct: 4 IYVYKVLKQVHPDTGISSKAMGSMNSFVNDIFERIAGLASRLAHYNKRSTITSREIQTAV 63
Query: 73 RLVLLGELAKHVASEGTKAVTKFAS 97
RL+L GELAKH SEGTKAVTK S
Sbjct: 64 RLLLPGELAKHAVSEGTKAVTKHTS 88
>pdb|1ID3|D Chain D, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
pdb|1ID3|H Chain H, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
Length = 130
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 58/84 (69%), Gaps = 13/84 (15%)
Query: 27 YIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVR 73
YI+KVL Q + D GIS K+M I+N+ S+LA Y KK TI++REIQT VR
Sbjct: 43 YIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVR 102
Query: 74 LVLLGELAKHVASEGTKAVTKFAS 97
L+L GELAKH SEGT+AVTK++S
Sbjct: 103 LILPGELAKHAVSEGTRAVTKYSS 126
>pdb|2JSS|A Chain A, Nmr Structure Of Chaperone Chz1 Complexed With Histone
H2a.Z-H2b
Length = 192
Score = 85.9 bits (211), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 56/82 (68%), Gaps = 13/82 (15%)
Query: 27 YIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVR 73
YI+KVL Q + D GIS K+M I+N+ S+LA Y KK TI++REIQT VR
Sbjct: 8 YIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVR 67
Query: 74 LVLLGELAKHVASEGTKAVTKF 95
L+L GELAKH SEGT+AVTK+
Sbjct: 68 LILPGELAKHAVSEGTRAVTKY 89
>pdb|1TUZ|A Chain A, Nmr Structure Of The Diacylglycerol Kinase Alpha, Nesgc
Target Hr532
Length = 118
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 43 SKAMGIMNTSRLARYKKKPTITSREIQTIVRLVLLGELAKHVASE--GTKAVTKF 95
+K G+++ S A+ +K +++++ +++L GE+AK+V + G + +F
Sbjct: 2 AKERGLISPSDFAQLQKYMEYSTKKVSDVLKLFEDGEMAKYVQGDAIGYEGFQQF 56
>pdb|1MNZ|A Chain A, Atomic Structure Of Glucose Isomerase
pdb|2GLK|A Chain A, High-Resolution Study Of D-Xylose Isomerase, 0.94a
Resolution.
pdb|2GUB|A Chain A, Crystal Structure Of Metal Free D-Xylose Isomerase.
pdb|2GVE|A Chain A, Time-Of-Flight Neutron Diffraction Structure Of D-Xylose
Isomerase
pdb|3CWH|A Chain A, D-Xylose Isomerase In Complex With Linear Product,
Per-Deuterated Xylulose
pdb|3KBM|A Chain A, Room Temperature X-Ray Structure Of D-Xylose Isomerase
Complexed With 2cd(2+) Co-Factors And
D12-D-Alpha-Glucose In The Cyclic Form
pdb|3KBN|A Chain A, Room Temperature Structure Of D-Xylose Isomerase In
Complex With 2ni(2+) Co-Factors And D12-D-Glucose In The
Linear Form
pdb|3KBS|A Chain A, Room Temperature X-Ray Structure Of D-Xylose Isomerase In
Complex With 2cd(2+) Co-Factors
pdb|3KBV|A Chain A, Room Temperature Structure Of D-Xylose Isomerase In
Complex With 2ni(2+) Co-Factors
pdb|3KBW|A Chain A, Room Temperature X-Ray Mixed-Metal Structure Of D-Xylose
Isomerase In Complex With Ni(2+) And Mg(2+) Co-Factors
pdb|3KBJ|A Chain A, Room Temperature X-Ray Structure Of Apo-D-Xylose Isomerase
pdb|3QYS|A Chain A, Room Temperature X-Ray Structure Of D-Xylose Isomerase In
Complex With 0.6ni2+ Cation Bound In M2 Metal Binding
Site At Ph5.8
pdb|3QZA|A Chain A, Joint Neutron And X-Ray Structure Of Apo-D-Xylose
Isomerase At Ph5.9
pdb|3U3H|A Chain A, X-Ray Crystallographic Analysis Of D-Xylose
Isomerase-Catalyzed Isomerization Of (R)-Glyceraldehyde
pdb|4A8I|A Chain A, Protein Crystallization And Microgravity: Glucose
Isomerase Crystals Grown During The Pcdf-Protein Mission
pdb|4A8L|A Chain A, Protein Crystallization And Microgravity: Glucose
Isomerase Crystals Grown During The Pcdf-Protein Mission
pdb|4A8R|A Chain A, Protein Crystallization And Microgravity: Glucose
Isomerase Crystals Grown During The Pcdf-Protein Mission
pdb|4A8N|A Chain A, Protein Crystallization And Microgravity: Glucose
Isomerase Crystals Grown During The Pcdf-Protein Mission
pdb|3KCL|A Chain A, Room Temperature Neutron Structure Of D-Xylose Isomerase
In Complex With Two Cd2+ Cations And D12-D-Alpha-Glucose
In The Ring Form (Refined Jointly With X-Ray Structure
3kbm)
pdb|4E3V|A Chain A, Crystal Structure Of Xylose Isomerase From Streptomyces
Rubiginosus Cryoprotected In Proline
pdb|4DUO|A Chain A, Room-Temperature X-Ray Structure Of D-Xylose Isomerase In
Complex With 2mg2+ Ions And Xylitol At Ph 7.7
pdb|4DVO|A Chain A, Room-Temperature Joint X-RayNEUTRON STRUCTURE OF D-Xylose
Isomerase In Complex With 2ni2+ And Per-Deuterated
D-Sorbitol At Ph 5.9
Length = 388
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 40 GISSKAMGIMNTSRLARYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAV 92
G+ + A G M + + + E+Q +R L ELA+ A++G +A+
Sbjct: 298 GVWASAAGCMRNYLILKERAAAFRADPEVQEALRASRLDELARPTAADGLQAL 350
>pdb|6XIA|A Chain A, Refinement Of Glucose Isomerase From Streptomyces Albus At
1.65 Angstroms With Data From An Imaging Plate
Length = 387
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 40 GISSKAMGIMNTSRLARYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAV 92
G+ + A G M + + + E+Q +R L ELA+ A++G +A+
Sbjct: 297 GVWASAAGCMRNYLILKERAAAFRADPEVQEALRASRLDELARPTAADGLQAL 349
>pdb|3KCO|A Chain A, Room Temperature Neutron Structure Of D-Xylose Isomerase
In Complex With Two Ni2+ Cations And D12-D-Glucose In
The Linear Form (Refined Jointly With X-Ray Structure
3kbn)
pdb|3KCJ|A Chain A, Room Temperature Neutron Structure Of Apo-D-Xylose
Isomerase (Refined Jointly With X-Ray Structure 3kbj)
Length = 388
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 40 GISSKAMGIMNTSRLARYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAV 92
G+ + A G M + + + E+Q +R L ELA+ A++G +A+
Sbjct: 298 GVWASAAGCMRNYLILKERAAAFRADPEVQEALRASRLDELARPTAADGLQAL 350
>pdb|3GNX|A Chain A, Structure Of Dehydrated D-Xylose Isomerase From
Streptomyces Rubiginosus
pdb|3GNX|E Chain E, Structure Of Dehydrated D-Xylose Isomerase From
Streptomyces Rubiginosus
Length = 387
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 40 GISSKAMGIMNTSRLARYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAV 92
G+ + A G M + + + E+Q +R L ELA+ A++G +A+
Sbjct: 297 GVWASAAGCMRNYLILKERAAAFRADPEVQEALRASRLDELARPTAADGLQAL 349
>pdb|1O1H|A Chain A, Structure Of Glucose Isomerase Derivatized With Kr.
pdb|1O1H|B Chain B, Structure Of Glucose Isomerase Derivatized With Kr.
pdb|2G4J|A Chain A, Anomalous Substructure Of Glucose Isomerase
pdb|1XIS|A Chain A, A Metal-Mediated Hydride Shift Mechanism For Xylose
Isomerase Based On The 1.6 Angstroms Streptomyces
Rubiginosus Structures With Xylitol And D-Xylose
pdb|2XIS|A Chain A, A Metal-Mediated Hydride Shift Mechanism For Xylose
Isomerase Based On The 1.6 Angstroms Streptomyces
Rubiginosus Structures With Xylitol And D-Xylose
pdb|3XIS|A Chain A, A Metal-Mediated Hydride Shift Mechanism For Xylose
Isomerase Based On The 1.6 Angstroms Streptomyces
Rubiginosus Structures With Xylitol And D-Xylose
pdb|4XIS|A Chain A, A Metal-Mediated Hydride Shift Mechanism For Xylose
Isomerase Based On The 1.6 Angstroms Streptomyces
Rubiginosus Structures With Xylitol And D-Xylose
pdb|3N4A|A Chain A, Crystal Structure Of D-Xylose Isomerase In Complex With
S-1,2- Propandiol
Length = 387
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 40 GISSKAMGIMNTSRLARYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAV 92
G+ + A G M + + + E+Q +R L ELA+ A++G +A+
Sbjct: 297 GVWASAAGCMRNYLILKERAAAFRADPEVQEALRASRLDELARPTAADGLQAL 349
>pdb|1OAD|A Chain A, Glucose Isomerase From Streptomyces Rubiginosus In P21212
Crystal Form
pdb|1OAD|B Chain B, Glucose Isomerase From Streptomyces Rubiginosus In P21212
Crystal Form
Length = 388
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 40 GISSKAMGIMNTSRLARYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAV 92
G+ + A G M + + + E+Q +R L ELA+ A++G +A+
Sbjct: 298 GVWASAAGCMRNYLILKERAAAFRADPEVQEALRASRLDELARPTAADGLQAL 350
>pdb|1GW9|A Chain A, Tri-Iodide Derivative Of Xylose Isomerase From
Streptomyces Rubiginosus
pdb|1XIB|A Chain A, Modes Of Binding Substrates And Their Analogues To The
Enzyme D-Xylose Isomerase
pdb|1XIC|A Chain A, Modes Of Binding Substrates And Their Analogues To The
Enzyme D-Xylose Isomerase
pdb|1XID|A Chain A, Modes Of Binding Substrates And Their Analogues To The
Enzyme D-Xylose Isomerase
pdb|1XIE|A Chain A, Modes Of Binding Substrates And Their Analogues To The
Enzyme D-Xylose Isomerase
pdb|1XIF|A Chain A, Modes Of Binding Substrates And Their Analogues To The
Enzyme D-Xylose Isomerase
pdb|1XIG|A Chain A, Modes Of Binding Substrates And Their Analogues To The
Enzyme D-xylose Isomerase
pdb|1XIH|A Chain A, Modes Of Binding Substrates And Their Analogues To The
Enzyme D-xylose Isomerase
pdb|1XII|A Chain A, Modes Of Binding Substrates And Their Analogues To The
Enzyme D-Xylose Isomerase
pdb|1XIJ|A Chain A, Modes Of Binding Substrates And Their Analogues To The
Enzyme D-Xylose Isomerase
pdb|8XIA|A Chain A, X-Ray Analysis Of D-Xylose Isomerase At 1.9 Angstroms:
Native Enzyme In Complex With Substrate And With A
Mechanism-Designed Inactivator
pdb|9XIA|A Chain A, X-Ray Analysis Of D-Xylose Isomerase At 1.9 Angstroms:
Native Enzyme In Complex With Substrate And With A
Mechanism-Designed Inactivator
Length = 388
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 40 GISSKAMGIMNTSRLARYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAV 92
G+ + A G M + + + E+Q +R L ELA+ A++G +A+
Sbjct: 298 GVWASAAGCMRNYLILKERAAAFRADPEVQEALRASRLDELARPTAADGLQAL 350
>pdb|1CLK|A Chain A, Crystal Structure Of Streptomyces Diastaticus No.7 Strain
M1033 Xylose Isomerase At 1.9 A Resolution With
Pseudo-I222 Space Group
Length = 387
Score = 25.4 bits (54), Expect = 7.6, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 40 GISSKAMGIMNTSRLARYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAV 92
G+ + A G M + + + E+Q +R L ELA+ A +G +A+
Sbjct: 297 GVWASAAGCMRNYLILKERAAAFRADPEVQEALRAARLDELAQPTAGDGLQAL 349
>pdb|1QT1|A Chain A, Crystal Structure Of Xylose Isomerase From Streptomyces
Diastaticus No.7 M1033 At 1.85 A Resolution
pdb|1QT1|B Chain B, Crystal Structure Of Xylose Isomerase From Streptomyces
Diastaticus No.7 M1033 At 1.85 A Resolution
Length = 387
Score = 25.4 bits (54), Expect = 7.6, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 40 GISSKAMGIMNTSRLARYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAV 92
G+ + A G M + + + E+Q +R L ELA+ A +G +A+
Sbjct: 297 GVWASAAGCMRNYLILKERAAAFRADPEVQEALRAARLDELAQPTAGDGLQAL 349
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.349
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,965,739
Number of Sequences: 62578
Number of extensions: 48519
Number of successful extensions: 119
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65
Number of HSP's gapped (non-prelim): 32
length of query: 98
length of database: 14,973,337
effective HSP length: 64
effective length of query: 34
effective length of database: 10,968,345
effective search space: 372923730
effective search space used: 372923730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)