Query 037475
Match_columns 98
No_of_seqs 105 out of 317
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 12:40:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037475.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037475hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00158 histone H2B; Provisio 100.0 8.2E-47 1.8E-51 266.3 7.3 89 10-98 15-116 (116)
2 PTZ00463 histone H2B; Provisio 100.0 1.1E-46 2.4E-51 265.8 7.0 90 8-97 14-116 (117)
3 smart00427 H2B Histone H2B. 100.0 9.8E-45 2.1E-49 246.0 6.8 76 22-97 1-89 (89)
4 KOG1744 Histone H2B [Chromatin 100.0 1.6E-39 3.4E-44 232.2 4.9 89 10-98 25-126 (127)
5 PF00125 Histone: Core histone 99.1 1.3E-11 2.9E-16 78.2 1.4 56 19-74 2-74 (75)
6 PF00808 CBFD_NFYB_HMF: Histon 96.7 0.0015 3.3E-08 40.5 2.9 45 27-72 7-65 (65)
7 cd07981 TAF12 TATA Binding Pro 96.4 0.0054 1.2E-07 39.4 4.0 47 28-74 7-66 (72)
8 COG2036 HHT1 Histones H3 and H 96.2 0.004 8.7E-08 42.5 2.6 50 28-78 25-87 (91)
9 smart00428 H3 Histone H3. 94.8 0.052 1.1E-06 37.9 4.0 55 21-75 32-101 (105)
10 cd00074 H2A Histone 2A; H2A is 93.2 0.075 1.6E-06 37.5 2.5 48 26-73 24-84 (115)
11 PF03847 TFIID_20kDa: Transcri 92.2 0.14 3.1E-06 33.0 2.5 46 28-73 5-63 (68)
12 smart00803 TAF TATA box bindin 90.8 0.26 5.6E-06 31.3 2.6 46 27-73 7-65 (65)
13 KOG0870 DNA polymerase epsilon 90.5 0.42 9.1E-06 36.2 3.9 51 25-75 13-78 (172)
14 KOG0869 CCAAT-binding factor, 88.1 0.59 1.3E-05 35.3 3.1 47 28-74 38-98 (168)
15 PLN00121 histone H3; Provision 86.4 1 2.2E-05 32.9 3.5 52 23-74 67-131 (136)
16 PTZ00018 histone H3; Provision 84.7 1.4 3.1E-05 32.1 3.6 52 23-74 67-131 (136)
17 KOG0871 Class 2 transcription 80.2 2.3 5E-05 31.8 3.3 54 26-79 16-83 (156)
18 PLN00156 histone H2AX; Provisi 79.8 1.8 4E-05 31.7 2.7 47 27-73 34-93 (139)
19 PLN00035 histone H4; Provision 79.6 3.3 7.3E-05 28.9 3.8 46 28-74 35-93 (103)
20 PLN00157 histone H2A; Provisio 78.7 1 2.3E-05 32.7 1.1 48 26-73 30-90 (132)
21 smart00414 H2A Histone 2A. 78.0 1.5 3.3E-05 30.4 1.7 48 26-73 13-73 (106)
22 COG5262 HTA1 Histone H2A [Chro 77.2 1.9 4.1E-05 31.3 2.1 47 27-73 31-90 (132)
23 PTZ00017 histone H2A; Provisio 76.7 1.5 3.3E-05 31.9 1.4 47 27-73 32-91 (134)
24 KOG1142 Transcription initiati 76.1 1.3 2.7E-05 35.5 1.0 49 25-73 157-218 (258)
25 cd00076 H4 Histone H4, one of 75.7 3 6.4E-05 28.0 2.6 22 52-73 55-76 (85)
26 PLN00153 histone H2A; Provisio 75.7 1.6 3.5E-05 31.6 1.3 47 27-73 29-88 (129)
27 PLN00161 histone H3; Provision 73.5 5.5 0.00012 29.1 3.7 52 23-74 60-125 (135)
28 PTZ00015 histone H4; Provision 73.3 3.5 7.6E-05 28.7 2.5 47 27-74 35-94 (102)
29 cd07979 TAF9 TATA Binding Prot 73.2 8.4 0.00018 26.8 4.5 51 26-77 5-68 (117)
30 PLN00160 histone H3; Provision 72.8 6.4 0.00014 27.2 3.7 52 23-74 26-91 (97)
31 PF02969 TAF: TATA box binding 70.8 3.9 8.4E-05 26.2 2.1 22 52-73 45-66 (66)
32 PLN00154 histone H2A; Provisio 70.0 3.3 7.1E-05 30.3 1.8 48 26-73 42-103 (136)
33 KOG1756 Histone 2A [Chromatin 64.9 5.7 0.00012 29.0 2.2 47 27-73 32-91 (131)
34 cd08050 TAF6 TATA Binding Prot 61.8 7.7 0.00017 31.3 2.7 24 52-75 41-64 (343)
35 KOG1745 Histones H3 and H4 [Ch 58.7 6.5 0.00014 28.8 1.6 42 34-75 79-133 (137)
36 PTZ00252 histone H2A; Provisio 57.0 9.2 0.0002 28.0 2.2 51 23-73 25-91 (134)
37 PF09193 CholecysA-Rec_N: Chol 56.5 4.2 9.2E-05 24.9 0.3 13 64-76 35-47 (47)
38 TIGR02442 Cob-chelat-sub cobal 52.9 18 0.00038 31.5 3.6 47 34-80 243-309 (633)
39 PF15630 CENP-S: Kinetochore c 49.7 11 0.00024 24.7 1.4 46 28-73 11-71 (76)
40 smart00576 BTP Bromodomain tra 45.4 31 0.00068 21.9 3.1 22 52-73 48-69 (77)
41 TIGR02030 BchI-ChlI magnesium 41.3 37 0.00081 27.5 3.6 29 52-80 286-314 (337)
42 cd06257 DnaJ DnaJ domain or J- 40.7 35 0.00075 19.2 2.5 18 25-42 18-35 (55)
43 smart00271 DnaJ DnaJ molecular 39.3 39 0.00084 19.4 2.6 17 25-41 19-35 (60)
44 smart00417 H4 Histone H4. 38.7 21 0.00046 23.4 1.5 18 52-69 55-72 (74)
45 COG0818 DgkA Diacylglycerol ki 38.2 50 0.0011 23.7 3.5 27 67-93 75-103 (123)
46 PF15510 CENP-W: Centromere ki 37.4 19 0.00042 25.1 1.2 54 24-77 18-98 (102)
47 TIGR02031 BchD-ChlD magnesium 35.2 47 0.001 28.8 3.5 29 52-80 235-263 (589)
48 CHL00081 chlI Mg-protoporyphyr 32.8 59 0.0013 26.7 3.5 29 52-80 299-327 (350)
49 KOG3334 Transcription initiati 32.7 34 0.00074 25.4 1.9 25 52-76 55-79 (148)
50 TIGR02905 spore_yutH spore coa 31.4 1.1E+02 0.0023 23.9 4.7 54 24-85 223-278 (313)
51 PF14687 DUF4460: Domain of un 28.4 68 0.0015 22.3 2.8 29 23-51 10-46 (112)
52 PF14374 Ribos_L4_asso_C: 60S 27.7 8.4 0.00018 25.7 -1.8 11 63-73 19-29 (80)
53 PF05798 Phage_FRD3: Bacteriop 26.4 29 0.00062 23.0 0.6 18 26-43 12-29 (75)
54 cd07353 harmonin_N N-terminal 26.1 1.1E+02 0.0024 20.5 3.3 45 21-77 18-66 (79)
55 PF00226 DnaJ: DnaJ domain; I 25.6 94 0.002 18.1 2.7 16 24-39 17-32 (64)
56 TIGR02391 hypoth_ymh conserved 24.9 63 0.0014 22.8 2.1 28 67-94 4-31 (125)
57 KOG0568 Molecular chaperone (D 23.4 49 0.0011 27.0 1.5 16 26-41 66-81 (342)
58 PF00493 MCM: MCM2/3/5 family 22.8 85 0.0019 24.9 2.7 53 21-75 244-326 (331)
59 TIGR01128 holA DNA polymerase 21.4 2.2E+02 0.0048 21.2 4.6 52 23-76 115-179 (302)
60 PF03477 ATP-cone: ATP cone do 20.9 1.7E+02 0.0037 18.2 3.4 56 21-77 10-70 (90)
61 PRK09522 bifunctional glutamin 20.8 68 0.0015 27.7 1.9 47 34-80 168-230 (531)
62 COG2511 GatE Archaeal Glu-tRNA 20.0 1.1E+02 0.0024 27.4 3.1 35 61-95 518-552 (631)
No 1
>PLN00158 histone H2B; Provisional
Probab=100.00 E-value=8.2e-47 Score=266.31 Aligned_cols=89 Identities=69% Similarity=0.921 Sum_probs=84.2
Q ss_pred CccccccccccchhHHHHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHHhc
Q 037475 10 GDKKKKRAKKSIKTYKIYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRLVL 76 (98)
Q Consensus 10 ~~~~kk~~~~r~esy~~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrLlL 76 (98)
...++++++++.|+|++||||||||||||+|||++||+|||| ++|++||+++|||+||||+||||+|
T Consensus 15 ~~~~kk~~~kr~esy~~YI~kVLKQVhPd~gIS~kaM~ImnSfvnDiferIA~EAs~La~~nkr~TltsrEIqtAvrLvL 94 (116)
T PLN00158 15 KGAKKKGSKSKTETYKIYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKIATEAGKLARYNKKPTVTSREIQTAVRLIL 94 (116)
T ss_pred ccccccccccccccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHhc
Confidence 334567778889999999999999999999999999999999 9999999999999999999999999
Q ss_pred hhHHHHHHHhhhhhhhhcccCC
Q 037475 77 LGELAKHVASEGTKAVTKFASF 98 (98)
Q Consensus 77 PgeLaKhAvseGtkAV~ky~s~ 98 (98)
||||+||||+||++||++|+++
T Consensus 95 pgELaKhAvsEGtkAv~k~~~~ 116 (116)
T PLN00158 95 PGELAKHAVSEGTKAVTKFTSA 116 (116)
T ss_pred cHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999985
No 2
>PTZ00463 histone H2B; Provisional
Probab=100.00 E-value=1.1e-46 Score=265.82 Aligned_cols=90 Identities=62% Similarity=0.876 Sum_probs=84.1
Q ss_pred CCCccccccccccchhHHHHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHH
Q 037475 8 TTGDKKKKRAKKSIKTYKIYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRL 74 (98)
Q Consensus 8 ~~~~~~kk~~~~r~esy~~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrL 74 (98)
+..++++++++++.|+|++||||||||||||+|||++||+|||| ++|++||+++|||+|||||||||
T Consensus 14 ~~~~~~kk~~~kr~esy~~YI~KVLKqVhPd~gIS~kaM~ImnSfvnDifErIA~EAs~La~~nkr~TltsrEIQtAvrL 93 (117)
T PTZ00463 14 TGPDGKKKRKKSRYDSYGLYIFKVLKQVHPDTGISRKSMNIMNSFLVDTFEKIATEASRLCKYTRRDTLSSREIQTAIRL 93 (117)
T ss_pred CCCCccccccccccchHHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHhh
Confidence 34444566778889999999999999999999999999999999 99999999999999999999999
Q ss_pred hchhHHHHHHHhhhhhhhhcccC
Q 037475 75 VLLGELAKHVASEGTKAVTKFAS 97 (98)
Q Consensus 75 lLPgeLaKhAvseGtkAV~ky~s 97 (98)
+|||||+||||+||++||++|++
T Consensus 94 lLpGELaKhAvsEGtkAv~k~~~ 116 (117)
T PTZ00463 94 VLPGELAKHAVSEGTKAVTKFTS 116 (117)
T ss_pred cccHHHHHhhhhHHHHHHHHhhc
Confidence 99999999999999999999986
No 3
>smart00427 H2B Histone H2B.
Probab=100.00 E-value=9.8e-45 Score=245.98 Aligned_cols=76 Identities=71% Similarity=0.989 Sum_probs=74.5
Q ss_pred hhHHHHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHHhchhHHHHHHHhhh
Q 037475 22 KTYKIYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRLVLLGELAKHVASEG 88 (98)
Q Consensus 22 esy~~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrLlLPgeLaKhAvseG 88 (98)
|+|++||||||||||||+|||++||+|||| ++|++||+|+|||+||||+||||+|||||+||||+||
T Consensus 1 esy~~Yi~kvLKqVhpd~giS~kam~imnSfvnDiferIa~EAs~L~~~nkr~TltsreIqtAvrl~LpgeLakhAvsEg 80 (89)
T smart00427 1 ETYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASKLARYNKKSTLSSREIQTAVRLILPGELAKHAVSEG 80 (89)
T ss_pred CcHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHHccHHHHHHHHHHH
Confidence 689999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhhhhcccC
Q 037475 89 TKAVTKFAS 97 (98)
Q Consensus 89 tkAV~ky~s 97 (98)
+|||+||++
T Consensus 81 tkAv~k~~~ 89 (89)
T smart00427 81 TKAVTKYSS 89 (89)
T ss_pred HHHHHhhcC
Confidence 999999985
No 4
>KOG1744 consensus Histone H2B [Chromatin structure and dynamics]
Probab=100.00 E-value=1.6e-39 Score=232.22 Aligned_cols=89 Identities=60% Similarity=0.858 Sum_probs=84.2
Q ss_pred CccccccccccchhHHHHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHHhc
Q 037475 10 GDKKKKRAKKSIKTYKIYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRLVL 76 (98)
Q Consensus 10 ~~~~kk~~~~r~esy~~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrLlL 76 (98)
++.+|++..++.|+|+.||||||||||||+|||++||+|||| ++|++||+|+||++||||+||||+|
T Consensus 25 kk~gk~~~~~~~e~~s~yv~kvlk~Vhpd~gis~~a~~vmnsf~ndife~iA~ea~rla~y~krstisSreiqta~rLll 104 (127)
T KOG1744|consen 25 KKAGKKRSTRRKESYSEYVYKVLKQVHPDLGISSKAMGVMNSFVNDIFERIASEAGRLAHYNKRSTISSREIQTAVRLLL 104 (127)
T ss_pred ccccccCcccccCceeeehhhhhhcccCCCCcCHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCcccHHHHHHHHHHhC
Confidence 334567788999999999999999999999999999999999 9999999999999999999999999
Q ss_pred hhHHHHHHHhhhhhhhhcccCC
Q 037475 77 LGELAKHVASEGTKAVTKFASF 98 (98)
Q Consensus 77 PgeLaKhAvseGtkAV~ky~s~ 98 (98)
||||++||++||++||++|+++
T Consensus 105 Pgel~khA~seGtkav~ky~~s 126 (127)
T KOG1744|consen 105 PGELAKHAVSEGTKAVTKYTSS 126 (127)
T ss_pred chHHhhhhhcccchhheeeccC
Confidence 9999999999999999999875
No 5
>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]. Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....
Probab=99.14 E-value=1.3e-11 Score=78.20 Aligned_cols=56 Identities=34% Similarity=0.371 Sum_probs=51.7
Q ss_pred ccchhHHHHHHHHhhhhcCC----CCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHH
Q 037475 19 KSIKTYKIYIFKVLNQIYLD----IGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRL 74 (98)
Q Consensus 19 ~r~esy~~YI~kVLKqVhpd----~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrL 74 (98)
++...+..||.|++++++++ ..||++||.+|++ ..++.++||.||+++|||.|+|+
T Consensus 2 ~~~~~~~~~~~r~~r~i~~~~~~~~ris~~a~~~L~~~~E~~~~~il~~A~~~a~~~kR~tI~~~DI~~A~r~ 74 (75)
T PF00125_consen 2 TRRLIPKFPFSRLLREIGEEILSKYRISSEALVALQSVLEYLLVEILEEAGNLARHAKRKTITPRDIQLAVRI 74 (75)
T ss_dssp HSHSSSHHHHHHHHHHHHHTTSSSSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBSEEGHHHHHHHHHH
T ss_pred cccccCceEEeeeeehhhcccccccccccccchhhhhhhhhhhhhhhhHHHHHHhhcCCcEecHHHHHHHHhc
Confidence 35677899999999999999 8999999999998 88899999999999999999986
No 6
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....
Probab=96.75 E-value=0.0015 Score=40.46 Aligned_cols=45 Identities=20% Similarity=0.352 Sum_probs=36.2
Q ss_pred HHHHHhhhhcCCC-CchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHH
Q 037475 27 YIFKVLNQIYLDI-GISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIV 72 (98)
Q Consensus 27 YI~kVLKqVhpd~-gISskam~imns-------------~~La~~~kr~TltsreIqtAv 72 (98)
=|.|++|+. ||. .||++|...|.- ...+..++|+||+.+||..||
T Consensus 7 ~vkri~k~~-~~~~~vs~ea~~~i~~a~e~Fi~~l~~~A~~~a~~~~rkti~~~Dv~~Av 65 (65)
T PF00808_consen 7 RVKRIMKSD-PDVMRVSKEAVEAIAKAAEEFIQYLAKEANEIAQRDKRKTITYEDVAKAV 65 (65)
T ss_dssp HHHHHHHHT-STTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEE-HHHHHHHH
T ss_pred HHHHHhccC-CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHC
Confidence 478999999 775 599999988876 556668999999999999986
No 7
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=96.45 E-value=0.0054 Score=39.41 Aligned_cols=47 Identities=17% Similarity=0.268 Sum_probs=40.3
Q ss_pred HHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHH
Q 037475 28 IFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRL 74 (98)
Q Consensus 28 I~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrL 74 (98)
+...++++.|+..++..|...|-. ..||.+.++.||..+|||-+++-
T Consensus 7 l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAkHr~~~tv~~~Di~l~l~r 66 (72)
T cd07981 7 LQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLAKHRKSDTLEVKDVQLHLER 66 (72)
T ss_pred HHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 567899999999999988865533 89999999999999999998763
No 8
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=96.23 E-value=0.004 Score=42.52 Aligned_cols=50 Identities=18% Similarity=0.257 Sum_probs=43.8
Q ss_pred HHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHHhchh
Q 037475 28 IFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRLVLLG 78 (98)
Q Consensus 28 I~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrLlLPg 78 (98)
|-|++|++-++ .+|..|...|+- ..+|.+.+|.|++..||+.|.+.+.+.
T Consensus 25 v~Ri~r~~~~~-Rvs~~A~~~l~~~~e~~~~~i~~~A~~~A~ha~RKTV~~~DI~la~~~~~~~ 87 (91)
T COG2036 25 VRRILRKAGAE-RVSSSAIEELQEALEEYLEEIAEDAVELAEHAKRKTVKAEDIKLALKRLGRR 87 (91)
T ss_pred HHHHHHHHhHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHhccc
Confidence 77889998888 999999887776 788899999999999999999987654
No 9
>smart00428 H3 Histone H3.
Probab=94.76 E-value=0.052 Score=37.90 Aligned_cols=55 Identities=20% Similarity=0.261 Sum_probs=44.8
Q ss_pred chhHHHHHHHHhhhhcC--CCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHHh
Q 037475 21 IKTYKIYIFKVLNQIYL--DIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRLV 75 (98)
Q Consensus 21 ~esy~~YI~kVLKqVhp--d~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrLl 75 (98)
+-.|+.-+..+..+..+ |..+++.|+..|.. ..++.+.||.||.++|||-|.|+-
T Consensus 32 k~pF~RLVREI~~~~~~~~~~R~~~~Al~aLQeasE~ylv~lfeda~~~a~HAkRvTl~~kDi~La~rir 101 (105)
T smart00428 32 KAPFQRLVREIAQKFTTGVDLRFQSSAIMALQEAAEAYLVGLFEDTNLLAIHAKRVTIMPKDIQLARRIR 101 (105)
T ss_pred cccHHHHHHHHHHHcCCCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCcHhhHHHHHHHh
Confidence 44678888888888777 88999999876655 556789999999999999998753
No 10
>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.
Probab=93.25 E-value=0.075 Score=37.48 Aligned_cols=48 Identities=27% Similarity=0.220 Sum_probs=36.3
Q ss_pred HHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHH
Q 037475 26 IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVR 73 (98)
Q Consensus 26 ~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvr 73 (98)
.=|+|.||+-.--..||..|.--|-. .+.++.+++.+||+++|+.|++
T Consensus 24 ~ri~R~Lk~~~~a~RVs~~A~VyLaAvLEYL~aEIlelA~n~ak~~k~krItp~hi~lAi~ 84 (115)
T cd00074 24 GRIHRYLKKGRYAERVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKKRITPRHLQLAVR 84 (115)
T ss_pred HHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHh
Confidence 34899998854446777665533222 7788999999999999999987
No 11
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=92.23 E-value=0.14 Score=32.95 Aligned_cols=46 Identities=17% Similarity=0.306 Sum_probs=32.0
Q ss_pred HHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHH
Q 037475 28 IFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVR 73 (98)
Q Consensus 28 I~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvr 73 (98)
+...++||-|+..+...+.++|-. ++||++.+..||..+|||....
T Consensus 5 l~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lAKhR~s~tle~~Dv~~~Le 63 (68)
T PF03847_consen 5 LQELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLAKHRKSSTLEVKDVQLHLE 63 (68)
T ss_dssp HHHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 566889999999999888765533 9999999999999999997643
No 12
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=90.82 E-value=0.26 Score=31.28 Aligned_cols=46 Identities=22% Similarity=0.375 Sum_probs=31.7
Q ss_pred HHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHH
Q 037475 27 YIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVR 73 (98)
Q Consensus 27 YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvr 73 (98)
-|.++.+...=+ .||..+..-+-. ..++++.+|.|||..||-.|++
T Consensus 7 ~i~ria~~~Gi~-ris~~a~~~l~~~~e~rl~~i~~~A~k~~~hakRktlt~~DI~~Alk 65 (65)
T smart00803 7 TIKDVAESLGIG-NLSDEAAKLLAEDVEYRIKEIVQEALKFMRHSKRTTLTTSDIDSALR 65 (65)
T ss_pred HHHHHHHHCCCc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeecHHHHHHHhC
Confidence 355666655322 466666553333 7788899999999999988853
No 13
>KOG0870 consensus DNA polymerase epsilon, subunit D [Transcription]
Probab=90.49 E-value=0.42 Score=36.22 Aligned_cols=51 Identities=16% Similarity=0.323 Sum_probs=40.9
Q ss_pred HHHHHHHhhhhcCC--CCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHHh
Q 037475 25 KIYIFKVLNQIYLD--IGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRLV 75 (98)
Q Consensus 25 ~~YI~kVLKqVhpd--~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrLl 75 (98)
..-|-|+.|.+-|+ ..||++|...|-- ..+|+-++|+||++.||-.|.+-+
T Consensus 13 ~AiI~rlvke~l~E~~vsisKeA~~Ai~raAtVFv~~Lts~s~e~A~~q~rKt~sadDVl~aL~Ei 78 (172)
T KOG0870|consen 13 NAIITRLVKEVLPESNVSISKEARLAIARAATVFVIFLTSVSNEIAKDQKRKTISADDVLKALDEI 78 (172)
T ss_pred HHHHHHHHHHhCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHh
Confidence 34577888888776 5899988875533 778899999999999999998754
No 14
>KOG0869 consensus CCAAT-binding factor, subunit A (HAP3) [Transcription]
Probab=88.06 E-value=0.59 Score=35.29 Aligned_cols=47 Identities=15% Similarity=0.190 Sum_probs=39.5
Q ss_pred HHHHhhhhcCCC-CchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHH
Q 037475 28 IFKVLNQIYLDI-GISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRL 74 (98)
Q Consensus 28 I~kVLKqVhpd~-gISskam~imns-------------~~La~~~kr~TltsreIqtAvrL 74 (98)
|-|+.|+.-|.. .||+.|-..|-- +..|+..||+||+..||-.|+--
T Consensus 38 V~RIMK~~lP~naKIsKDAKE~vQECVSEfISFvT~EAsekC~~EkRKTIngdDllwAm~t 98 (168)
T KOG0869|consen 38 VSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASEKCQREKRKTINGDDLLWAMST 98 (168)
T ss_pred HHHHHHhcCCcccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 778999998875 599888877744 77888999999999999999754
No 15
>PLN00121 histone H3; Provisional
Probab=86.39 E-value=1 Score=32.88 Aligned_cols=52 Identities=19% Similarity=0.253 Sum_probs=38.9
Q ss_pred hHHHHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHH
Q 037475 23 TYKIYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRL 74 (98)
Q Consensus 23 sy~~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrL 74 (98)
.|...+..+.....++.-+.+.|+.-|-- ...+.+.||-||.++|||-|.||
T Consensus 67 pF~RLVREI~~~~~~~~Rf~~~Al~ALQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~ri 131 (136)
T PLN00121 67 PFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
T ss_pred cHHHHHHHHHHHhCccceeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcceecchhhHHHHHHh
Confidence 45666666666667778888888765543 44556899999999999999875
No 16
>PTZ00018 histone H3; Provisional
Probab=84.73 E-value=1.4 Score=32.11 Aligned_cols=52 Identities=19% Similarity=0.253 Sum_probs=38.3
Q ss_pred hHHHHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHH
Q 037475 23 TYKIYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRL 74 (98)
Q Consensus 23 sy~~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrL 74 (98)
.|...+..+..+..++.-+.+.|+..|-. ...+.+.||-||..+|||-|.||
T Consensus 67 pF~RLVREI~~~~~~~~rf~~~al~aLQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~ri 131 (136)
T PTZ00018 67 PFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
T ss_pred cHHHHHHHHHHHcCCcceeeHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcceecchhhHHHHHHh
Confidence 45556666666666778888888765543 34456899999999999999875
No 17
>KOG0871 consensus Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=80.21 E-value=2.3 Score=31.81 Aligned_cols=54 Identities=15% Similarity=0.289 Sum_probs=44.8
Q ss_pred HHHHHHhhhhcC-CCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHHhchhH
Q 037475 26 IYIFKVLNQIYL-DIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRLVLLGE 79 (98)
Q Consensus 26 ~YI~kVLKqVhp-d~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrLlLPge 79 (98)
--|.|++|.+-| |..+..+|-++++. ..+|.-..++||.+..|+.|..-|==||
T Consensus 16 Atv~KmIke~lP~d~rvakeareliincCvEFI~liSsEAneic~~e~KKTIa~EHV~KALe~LgF~e 83 (156)
T KOG0871|consen 16 ATVNKMIKEMLPKDVRVAKEARELIINCCVEFINLISSEANEICNKEAKKTIAPEHVIKALENLGFGE 83 (156)
T ss_pred HHHHHHHHHhCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcccCCHHHHHHHHHHcchHH
Confidence 358899999999 99999999987755 6777889999999999999987553343
No 18
>PLN00156 histone H2AX; Provisional
Probab=79.80 E-value=1.8 Score=31.72 Aligned_cols=47 Identities=28% Similarity=0.246 Sum_probs=34.6
Q ss_pred HHHHHhhhhcCCCCchHHHHH----h--------hhh-ccccccCCCCCCChHHHHHHHH
Q 037475 27 YIFKVLNQIYLDIGISSKAMG----I--------MNT-SRLARYKKKPTITSREIQTIVR 73 (98)
Q Consensus 27 YI~kVLKqVhpd~gISskam~----i--------mns-~~La~~~kr~TltsreIqtAvr 73 (98)
=|.|.|+.-+.-..|+.-|.- | +.- ..-++.+++.-|++|.||.|++
T Consensus 34 Ri~R~Lk~g~ya~RVga~ApVYLAAVLEYLtaEVLELAgNaa~d~kk~RItPrHi~lAIr 93 (139)
T PLN00156 34 RIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVR 93 (139)
T ss_pred HHHHHHhcCChhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHhhcc
Confidence 488999886555566655442 2 222 6667889999999999999987
No 19
>PLN00035 histone H4; Provisional
Probab=79.63 E-value=3.3 Score=28.87 Aligned_cols=46 Identities=11% Similarity=0.027 Sum_probs=32.6
Q ss_pred HHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHH
Q 037475 28 IFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRL 74 (98)
Q Consensus 28 I~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrL 74 (98)
|.|+++.-- --.||..+.+-+.. ..++.+.+|.|++..||-.|++.
T Consensus 35 IrRLARr~G-vkRIS~~ay~elr~vle~~l~~I~~dav~ya~HA~RKTV~~~DV~~Alkr 93 (103)
T PLN00035 35 IRRLARRGG-VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKR 93 (103)
T ss_pred HHHHHHHcC-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHH
Confidence 666666542 23577666643322 67888999999999999988764
No 20
>PLN00157 histone H2A; Provisional
Probab=78.72 E-value=1 Score=32.71 Aligned_cols=48 Identities=27% Similarity=0.225 Sum_probs=35.6
Q ss_pred HHHHHHhhhhcCCCCchHHHHH------------hhhh-ccccccCCCCCCChHHHHHHHH
Q 037475 26 IYIFKVLNQIYLDIGISSKAMG------------IMNT-SRLARYKKKPTITSREIQTIVR 73 (98)
Q Consensus 26 ~YI~kVLKqVhpd~gISskam~------------imns-~~La~~~kr~TltsreIqtAvr 73 (98)
.=|.|.|++-+.-..|++.|.- |+.- .+-++.+++.-|++|.||.|++
T Consensus 30 gRi~R~Lk~g~~a~RIg~~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~RItPrHi~lAI~ 90 (132)
T PLN00157 30 GRIARYLKAGKYATRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVR 90 (132)
T ss_pred HHHHHHHhcCchhhhcCCCcHhHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHhhccc
Confidence 3489999987655666665542 2222 6677889999999999999987
No 21
>smart00414 H2A Histone 2A.
Probab=78.03 E-value=1.5 Score=30.39 Aligned_cols=48 Identities=25% Similarity=0.275 Sum_probs=33.6
Q ss_pred HHHHHHhhhhcCCCCchHHHH------------Hhhhh-ccccccCCCCCCChHHHHHHHH
Q 037475 26 IYIFKVLNQIYLDIGISSKAM------------GIMNT-SRLARYKKKPTITSREIQTIVR 73 (98)
Q Consensus 26 ~YI~kVLKqVhpd~gISskam------------~imns-~~La~~~kr~TltsreIqtAvr 73 (98)
..|+|.||.-..-..|++-|. .|+.- ..-++-+++.-||+++||.|++
T Consensus 13 gRi~r~Lk~~~~~~Rv~~~A~VyLaAvLEYLtaEILeLagn~a~~~k~~rItp~hi~lAi~ 73 (106)
T smart00414 13 GRIHRLLRKGTYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKRRITPRHLQLAIR 73 (106)
T ss_pred HHHHHHHHcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHhhhcc
Confidence 457888887654456665543 23322 5567788899999999999987
No 22
>COG5262 HTA1 Histone H2A [Chromatin structure and dynamics]
Probab=77.21 E-value=1.9 Score=31.32 Aligned_cols=47 Identities=26% Similarity=0.299 Sum_probs=36.8
Q ss_pred HHHHHhhhhcCCCCchHHHHH------------hhhh-ccccccCCCCCCChHHHHHHHH
Q 037475 27 YIFKVLNQIYLDIGISSKAMG------------IMNT-SRLARYKKKPTITSREIQTIVR 73 (98)
Q Consensus 27 YI~kVLKqVhpd~gISskam~------------imns-~~La~~~kr~TltsreIqtAvr 73 (98)
-|.|+||.-.-.+.|+++|.- |++- .+-|+-+++.-|++|.||-|+|
T Consensus 31 rvkr~lk~~~~~~Rig~~A~Vyl~AvleYL~aEilelAgNaA~d~kkkri~PrHlqlAIr 90 (132)
T COG5262 31 RVKRLLKKGNYRMRIGAGAPVYLAAVLEYLAAEILELAGNAARDNKKKRIIPRHLQLAIR 90 (132)
T ss_pred HHHHHHHcCccceeecCCcHHHHHHHHHHHHHHHHHHhhhhhhhcCcceechHHHHHHhc
Confidence 488999966666778877652 2222 7788999999999999999987
No 23
>PTZ00017 histone H2A; Provisional
Probab=76.74 E-value=1.5 Score=31.92 Aligned_cols=47 Identities=23% Similarity=0.269 Sum_probs=33.9
Q ss_pred HHHHHhhhhcCCCCchHHHHH------------hhhh-ccccccCCCCCCChHHHHHHHH
Q 037475 27 YIFKVLNQIYLDIGISSKAMG------------IMNT-SRLARYKKKPTITSREIQTIVR 73 (98)
Q Consensus 27 YI~kVLKqVhpd~gISskam~------------imns-~~La~~~kr~TltsreIqtAvr 73 (98)
=|.|.|+.-..-..|+.-|.- |+.- .+-++-+++.-||+|+||.|++
T Consensus 32 Ri~R~Lk~g~~a~RV~a~A~VYLAAVLEYLtaEILELAgNaa~d~kk~RItPrHi~lAI~ 91 (134)
T PTZ00017 32 RVHRYLKKGRYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAAKDNKKKRITPRHIQLAIR 91 (134)
T ss_pred HHHHHHhccchhccccccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHhhcc
Confidence 488888876444456554432 2222 6677889999999999999987
No 24
>KOG1142 consensus Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=76.12 E-value=1.3 Score=35.53 Aligned_cols=49 Identities=20% Similarity=0.290 Sum_probs=40.4
Q ss_pred HHHHHHHhhhhcCCCCchHHHHHhh--------hh-----ccccccCCCCCCChHHHHHHHH
Q 037475 25 KIYIFKVLNQIYLDIGISSKAMGIM--------NT-----SRLARYKKKPTITSREIQTIVR 73 (98)
Q Consensus 25 ~~YI~kVLKqVhpd~gISskam~im--------ns-----~~La~~~kr~TltsreIqtAvr 73 (98)
..-+...++||.++..|..++-++| ++ +.||.+.|..||-.|||+..+.
T Consensus 157 k~kl~dLvqqId~~~~LD~dVedlLleiADdFV~sii~~sC~LAKHRKsdtlEvrDIqLhLE 218 (258)
T KOG1142|consen 157 KRKLDDLVQQIDGTTKLDDDVEDLLLEIADDFVSSIIHRSCKLAKHRKSDTVEVRDIQLHLE 218 (258)
T ss_pred ccchhHHHHhhcCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhheeeeee
Confidence 4447888999999999998776544 33 9999999999999999997754
No 25
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=75.72 E-value=3 Score=28.02 Aligned_cols=22 Identities=14% Similarity=0.246 Sum_probs=19.8
Q ss_pred ccccccCCCCCCChHHHHHHHH
Q 037475 52 SRLARYKKKPTITSREIQTIVR 73 (98)
Q Consensus 52 ~~La~~~kr~TltsreIqtAvr 73 (98)
..++.+.+|.|++..||-.|++
T Consensus 55 v~ya~Ha~RKTVt~~DV~~alk 76 (85)
T cd00076 55 VTYTEHAKRKTVTAMDVVYALK 76 (85)
T ss_pred HHHHHhcCCCcCcHHHHHHHHH
Confidence 6788899999999999988876
No 26
>PLN00153 histone H2A; Provisional
Probab=75.66 E-value=1.6 Score=31.64 Aligned_cols=47 Identities=28% Similarity=0.254 Sum_probs=34.9
Q ss_pred HHHHHhhhhcCCCCchHHHHH------------hhhh-ccccccCCCCCCChHHHHHHHH
Q 037475 27 YIFKVLNQIYLDIGISSKAMG------------IMNT-SRLARYKKKPTITSREIQTIVR 73 (98)
Q Consensus 27 YI~kVLKqVhpd~gISskam~------------imns-~~La~~~kr~TltsreIqtAvr 73 (98)
=|.|.|++-+.-..|++-|.- |+.. .+-++.+++.-|++|.||.|++
T Consensus 29 Ri~R~Lr~g~~a~Rvga~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~RItPrHi~lAI~ 88 (129)
T PLN00153 29 RIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIR 88 (129)
T ss_pred HHHHHHhcCchhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHhhcc
Confidence 488899876555566655442 2222 6778899999999999999987
No 27
>PLN00161 histone H3; Provisional
Probab=73.54 E-value=5.5 Score=29.13 Aligned_cols=52 Identities=15% Similarity=0.220 Sum_probs=35.2
Q ss_pred hHHHHHHHHhhhhcC-CCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHH
Q 037475 23 TYKIYIFKVLNQIYL-DIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRL 74 (98)
Q Consensus 23 sy~~YI~kVLKqVhp-d~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrL 74 (98)
.|+.-+..+..+..+ |+-+.+.|+.-|-. .-.+.+.||-||.++|||-|.||
T Consensus 60 PF~RLVREI~~~~~~~~~Rfq~~Al~ALQEAsEayLV~lFeda~lcaiHAkRVTlm~kDm~La~ri 125 (135)
T PLN00161 60 PFARLVREISNEMLREPFRWTAEALLALQEATEDFLVHLFEDCNLCAIHAKRVTIMPKDMQLARRI 125 (135)
T ss_pred cHHHHHHHHHHhcCCCCcEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHh
Confidence 445555555444443 57777777755433 33456899999999999999875
No 28
>PTZ00015 histone H4; Provisional
Probab=73.28 E-value=3.5 Score=28.67 Aligned_cols=47 Identities=13% Similarity=0.154 Sum_probs=31.2
Q ss_pred HHHHHhhhhcCCCCchHHHHHh----hhh---------ccccccCCCCCCChHHHHHHHHH
Q 037475 27 YIFKVLNQIYLDIGISSKAMGI----MNT---------SRLARYKKKPTITSREIQTIVRL 74 (98)
Q Consensus 27 YI~kVLKqVhpd~gISskam~i----mns---------~~La~~~kr~TltsreIqtAvrL 74 (98)
-|.|+++.-- =-.||..+..- ++. ..++.+.+|.|+++.||--|++.
T Consensus 35 ~IrRLarr~G-vkRIS~d~y~e~r~vle~~l~~I~rdav~~aeHA~RKTVt~~DV~~AlKr 94 (102)
T PTZ00015 35 AIRRLARRGG-VKRISGDIYEEVRGVLKAFLENVVRDSTAYTEYARRKTVTAMDVVYALKR 94 (102)
T ss_pred HHHHHHHHcC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHh
Confidence 4666666431 12466665532 222 67888999999999999888763
No 29
>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi
Probab=73.21 E-value=8.4 Score=26.84 Aligned_cols=51 Identities=8% Similarity=0.073 Sum_probs=35.0
Q ss_pred HHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHHhch
Q 037475 26 IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRLVLL 77 (98)
Q Consensus 26 ~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrLlLP 77 (98)
..|.++||.-. ....+..+...|-- ..++.+.+|.||+..||..|+...+.
T Consensus 5 ~~v~~iLk~~G-v~~~~~~v~~~Lle~~~ry~~~il~dA~~~a~hA~r~tV~~eDV~lAi~~r~~ 68 (117)
T cd07979 5 RVIAAILKSMG-ITEYEPRVINQLLEFAYRYTTDVLDDAKVYSEHAGKANIDADDVKLAIQSRVD 68 (117)
T ss_pred HHHHHHHHHCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Confidence 45667777531 12345555443322 77888999999999999999988774
No 30
>PLN00160 histone H3; Provisional
Probab=72.77 E-value=6.4 Score=27.16 Aligned_cols=52 Identities=13% Similarity=0.138 Sum_probs=33.9
Q ss_pred hHHHHHHHHhhhhcC-CCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHH
Q 037475 23 TYKIYIFKVLNQIYL-DIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRL 74 (98)
Q Consensus 23 sy~~YI~kVLKqVhp-d~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrL 74 (98)
.|..-+..+.....+ +..+.+.|+.-+-. ...+.+.||-||.++|||-|.|+
T Consensus 26 pF~RLVREI~~~~~~~~~Rfq~~Al~ALQeAsEayLv~lfed~~lca~HakRVTl~~kD~~L~~ri 91 (97)
T PLN00160 26 PFARLVREIQMEMSREAYRWQGSAILALQEAAEAHLVGLFEDSNLCAIHGKRVTIMPKDMQLARRI 91 (97)
T ss_pred cHHHHHHHHHHHcCCCCcEeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccccchhhHHHHHHh
Confidence 455555444443322 36677777654433 33456899999999999999773
No 31
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=70.78 E-value=3.9 Score=26.24 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=17.7
Q ss_pred ccccccCCCCCCChHHHHHHHH
Q 037475 52 SRLARYKKKPTITSREIQTIVR 73 (98)
Q Consensus 52 ~~La~~~kr~TltsreIqtAvr 73 (98)
.++++..+|.+||..||..|.|
T Consensus 45 ~kfm~hskR~~Lt~~Di~~ALr 66 (66)
T PF02969_consen 45 LKFMRHSKRTKLTTDDINSALR 66 (66)
T ss_dssp HHHHHHTT-SSB-HHHHHHHH-
T ss_pred HHHHHHhCCCCCCHHHHHHHhC
Confidence 7889999999999999999975
No 32
>PLN00154 histone H2A; Provisional
Probab=70.04 E-value=3.3 Score=30.34 Aligned_cols=48 Identities=21% Similarity=0.209 Sum_probs=34.2
Q ss_pred HHHHHHhhhhc-CCCCchHHHH------------Hhhhh-ccccccCCCCCCChHHHHHHHH
Q 037475 26 IYIFKVLNQIY-LDIGISSKAM------------GIMNT-SRLARYKKKPTITSREIQTIVR 73 (98)
Q Consensus 26 ~YI~kVLKqVh-pd~gISskam------------~imns-~~La~~~kr~TltsreIqtAvr 73 (98)
.=|.|.||+-. -...|++.|. .|+.- ++-++.+++.-||+|.||.|++
T Consensus 42 gRi~r~Lk~g~~~~~RVga~ApVYLAAVLEYLtAEVLELAGNaA~d~kk~RItPrHi~lAIr 103 (136)
T PLN00154 42 GRIHRQLKQRVSAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
T ss_pred HHHHHHHHhhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhCCceecHHHhhhhcc
Confidence 34888999864 2345555443 23332 6678899999999999999987
No 33
>KOG1756 consensus Histone 2A [Chromatin structure and dynamics]
Probab=64.91 E-value=5.7 Score=29.00 Aligned_cols=47 Identities=28% Similarity=0.311 Sum_probs=35.6
Q ss_pred HHHHHhhhhcCCCCchHHHHH------------hhhh-ccccccCCCCCCChHHHHHHHH
Q 037475 27 YIFKVLNQIYLDIGISSKAMG------------IMNT-SRLARYKKKPTITSREIQTIVR 73 (98)
Q Consensus 27 YI~kVLKqVhpd~gISskam~------------imns-~~La~~~kr~TltsreIqtAvr 73 (98)
-|.|.||.-..-..||.-|-- |++- ..-++-|++.-|++|.||-|++
T Consensus 32 ri~r~Lr~~~~~~ri~~gapV~laavLeYL~Aeile~agnaardnkk~ri~PrH~~lAI~ 91 (131)
T KOG1756|consen 32 RIHRLLRKGRYAQRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRITPRHLQLAIR 91 (131)
T ss_pred HHHHHHHccchhhhccCCChHHHHHHHHHHHHHHHHHhHHHhhhcCccccChHHHHHHHh
Confidence 588999986656667655432 2222 7778899999999999999987
No 34
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=61.79 E-value=7.7 Score=31.28 Aligned_cols=24 Identities=21% Similarity=0.463 Sum_probs=21.9
Q ss_pred ccccccCCCCCCChHHHHHHHHHh
Q 037475 52 SRLARYKKKPTITSREIQTIVRLV 75 (98)
Q Consensus 52 ~~La~~~kr~TltsreIqtAvrLl 75 (98)
.++++..+|.||+..||..|++..
T Consensus 41 ~k~~~hskR~~l~~~Di~~Al~~~ 64 (343)
T cd08050 41 AKFMRHSKRRKLTTSDVNHALRLR 64 (343)
T ss_pred HHHHHHhCCCcCCHHHHHHHHHHh
Confidence 789999999999999999998863
No 35
>KOG1745 consensus Histones H3 and H4 [Chromatin structure and dynamics]
Probab=58.67 E-value=6.5 Score=28.84 Aligned_cols=42 Identities=24% Similarity=0.279 Sum_probs=31.5
Q ss_pred hhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHHh
Q 037475 34 QIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRLV 75 (98)
Q Consensus 34 qVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrLl 75 (98)
..-||+-+.+-|+.-+-- ...|...||-||-+.|||-|.|+-
T Consensus 79 ~f~~dLrfqs~Ai~ALQeA~EayLv~LfEdtnlcAihAkRVTimpkdiQlArrir 133 (137)
T KOG1745|consen 79 DFKTDLRFQSSAIAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 133 (137)
T ss_pred cccccceehHHHHHHHHHHHHHHHHHhccccchhhhccceeEecccceehhhhcc
Confidence 346778888777754432 455678999999999999999853
No 36
>PTZ00252 histone H2A; Provisional
Probab=57.02 E-value=9.2 Score=27.95 Aligned_cols=51 Identities=18% Similarity=0.182 Sum_probs=34.7
Q ss_pred hHH-HHHHHHhhhhcCCCCchHHHHH----h--------hhh-cccc--ccCCCCCCChHHHHHHHH
Q 037475 23 TYK-IYIFKVLNQIYLDIGISSKAMG----I--------MNT-SRLA--RYKKKPTITSREIQTIVR 73 (98)
Q Consensus 23 sy~-~YI~kVLKqVhpd~gISskam~----i--------mns-~~La--~~~kr~TltsreIqtAvr 73 (98)
.|. .=|.|.|++-+.--.|++-|.= | +.- .+-+ +.+++.-|++|.||.||+
T Consensus 25 ~FPVgRi~R~Lr~g~ya~RIga~ApVYLAAVLEYLtaEVLELAgnaa~d~~~kk~RItPrHi~lAIr 91 (134)
T PTZ00252 25 IFPVGRVGSLLRRGQYARRIGASGAVYMAAVLEYLTAELLELSVKAAAQQAKKPKRLTPRTVTLAVR 91 (134)
T ss_pred cCchHHHHHHHHcCCcccccCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccHHHHHhhcc
Confidence 344 3488889887666677765542 2 222 3333 358889999999999987
No 37
>PF09193 CholecysA-Rec_N: Cholecystokinin A receptor, N-terminal; InterPro: IPR015276 This entry represents the extracellular N-terminal domain of the cholecystokinin A receptor. This domain adopts a tertiary structure consisting of a few helical turns and a disulphide-cross linked loop. It is required for interaction of the cholecystokinin A receptor with its corresponding hormonal ligand []. ; PDB: 1D6G_A.
Probab=56.51 E-value=4.2 Score=24.86 Aligned_cols=13 Identities=38% Similarity=0.572 Sum_probs=9.3
Q ss_pred ChHHHHHHHHHhc
Q 037475 64 TSREIQTIVRLVL 76 (98)
Q Consensus 64 tsreIqtAvrLlL 76 (98)
.++|.|-||+++|
T Consensus 35 pske~qpaVqILL 47 (47)
T PF09193_consen 35 PSKEWQPAVQILL 47 (47)
T ss_dssp S-SSHHHHHHS--
T ss_pred ChhHHhhhHhhhC
Confidence 7889999999886
No 38
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=52.86 E-value=18 Score=31.48 Aligned_cols=47 Identities=17% Similarity=0.289 Sum_probs=35.7
Q ss_pred hhcCCCCchHHHHHhhhh--------------------ccccccCCCCCCChHHHHHHHHHhchhHH
Q 037475 34 QIYLDIGISSKAMGIMNT--------------------SRLARYKKKPTITSREIQTIVRLVLLGEL 80 (98)
Q Consensus 34 qVhpd~gISskam~imns--------------------~~La~~~kr~TltsreIqtAvrLlLPgeL 80 (98)
+..|+..|+...+..+-. .-+|-.+.+.+++..||+.|++|+|+.-+
T Consensus 243 ~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~~lvL~hR~ 309 (633)
T TIGR02442 243 SLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVREAAELVLPHRR 309 (633)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHhhhhc
Confidence 445667777766654433 34566899999999999999999998755
No 39
>PF15630 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 4DRB_H 3V9R_C.
Probab=49.69 E-value=11 Score=24.69 Aligned_cols=46 Identities=13% Similarity=0.283 Sum_probs=29.8
Q ss_pred HHHHhhhh--cCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHH
Q 037475 28 IFKVLNQI--YLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVR 73 (98)
Q Consensus 28 I~kVLKqV--hpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvr 73 (98)
+-++..++ ..+..+|.+.+..|-- .-.|++-+|+||+..|+.-.+|
T Consensus 11 v~ki~ee~~~~~~~~~s~~~i~al~ELv~~q~~~~a~DLe~FAkHA~R~tI~~dDV~Ll~R 71 (76)
T PF15630_consen 11 VGKIVEEEAKEKGVEVSPQFIAALTELVYKQLENLAKDLEAFAKHAGRSTINMDDVKLLAR 71 (76)
T ss_dssp HHHHHHHCCCCTTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHTT
T ss_pred HHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHHHhh
Confidence 44555555 3566788888875544 5677899999999999865443
No 40
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=45.40 E-value=31 Score=21.87 Aligned_cols=22 Identities=5% Similarity=0.045 Sum_probs=18.2
Q ss_pred ccccccCCCCCCChHHHHHHHH
Q 037475 52 SRLARYKKKPTITSREIQTIVR 73 (98)
Q Consensus 52 ~~La~~~kr~TltsreIqtAvr 73 (98)
..++...+|.+.+..||..|+.
T Consensus 48 ~~~a~~agR~~~~~~Dv~~Al~ 69 (77)
T smart00576 48 HSYAELAGRTEPNLGDVVLALE 69 (77)
T ss_pred HHHHHHcCCCCCCHHHHHHHHH
Confidence 5566678899999999998865
No 41
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=41.34 E-value=37 Score=27.48 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=25.1
Q ss_pred ccccccCCCCCCChHHHHHHHHHhchhHH
Q 037475 52 SRLARYKKKPTITSREIQTIVRLVLLGEL 80 (98)
Q Consensus 52 ~~La~~~kr~TltsreIqtAvrLlLPgeL 80 (98)
.-+|-.++|..+++.||+.+++++|+.-+
T Consensus 286 rA~Aal~GR~~V~~dDv~~~a~~vL~HR~ 314 (337)
T TIGR02030 286 KALAAFEGRTEVTVDDIRRVAVLALRHRL 314 (337)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHHHhC
Confidence 44666899999999999999999998655
No 42
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=40.71 E-value=35 Score=19.19 Aligned_cols=18 Identities=17% Similarity=-0.127 Sum_probs=13.9
Q ss_pred HHHHHHHhhhhcCCCCch
Q 037475 25 KIYIFKVLNQIYLDIGIS 42 (98)
Q Consensus 25 ~~YI~kVLKqVhpd~gIS 42 (98)
..-..++.++.|||..-+
T Consensus 18 k~~y~~l~~~~HPD~~~~ 35 (55)
T cd06257 18 KKAYRKLALKYHPDKNPD 35 (55)
T ss_pred HHHHHHHHHHHCcCCCCC
Confidence 344578889999998765
No 43
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=39.32 E-value=39 Score=19.40 Aligned_cols=17 Identities=18% Similarity=-0.144 Sum_probs=13.1
Q ss_pred HHHHHHHhhhhcCCCCc
Q 037475 25 KIYIFKVLNQIYLDIGI 41 (98)
Q Consensus 25 ~~YI~kVLKqVhpd~gI 41 (98)
..-..+..++.|||..-
T Consensus 19 k~ay~~l~~~~HPD~~~ 35 (60)
T smart00271 19 KKAYRKLALKYHPDKNP 35 (60)
T ss_pred HHHHHHHHHHHCcCCCC
Confidence 34457788999999876
No 44
>smart00417 H4 Histone H4.
Probab=38.66 E-value=21 Score=23.35 Aligned_cols=18 Identities=11% Similarity=0.257 Sum_probs=15.6
Q ss_pred ccccccCCCCCCChHHHH
Q 037475 52 SRLARYKKKPTITSREIQ 69 (98)
Q Consensus 52 ~~La~~~kr~TltsreIq 69 (98)
..++.+.+|.|+++.||-
T Consensus 55 v~~a~ha~RKTV~~~DV~ 72 (74)
T smart00417 55 VTYTEHARRKTVTAMDVV 72 (74)
T ss_pred HHHHHhcCCCcccHHHhe
Confidence 668889999999999974
No 45
>COG0818 DgkA Diacylglycerol kinase [Cell envelope biogenesis, outer membrane]
Probab=38.22 E-value=50 Score=23.70 Aligned_cols=27 Identities=37% Similarity=0.477 Sum_probs=23.6
Q ss_pred HHHHHHHHhchh--HHHHHHHhhhhhhhh
Q 037475 67 EIQTIVRLVLLG--ELAKHVASEGTKAVT 93 (98)
Q Consensus 67 eIqtAvrLlLPg--eLaKhAvseGtkAV~ 93 (98)
-|+..|+++-|. ||+|.|-.-|.-||-
T Consensus 75 AIEa~VD~~s~e~helak~AKD~as~AVl 103 (123)
T COG0818 75 AIEAVVDLISPEYHELAKRAKDMGSAAVL 103 (123)
T ss_pred HHHHHHHHcccchhHHHHHHHHHHhHHHH
Confidence 789999999984 999999999988874
No 46
>PF15510 CENP-W: Centromere kinetochore component W
Probab=37.38 E-value=19 Score=25.12 Aligned_cols=54 Identities=17% Similarity=0.225 Sum_probs=38.0
Q ss_pred HHHHHHHHhhhhcCCCCch--HHHH--------------Hhhhh----ccc-------cccCCCCCCChHHHHHHHHHhc
Q 037475 24 YKIYIFKVLNQIYLDIGIS--SKAM--------------GIMNT----SRL-------ARYKKKPTITSREIQTIVRLVL 76 (98)
Q Consensus 24 y~~YI~kVLKqVhpd~gIS--skam--------------~imns----~~L-------a~~~kr~TltsreIqtAvrLlL 76 (98)
-..++.||+|+--|.+.+- ...| --+|. -+| |.-||+.+|-...|+.|...+|
T Consensus 18 PrgfLkrv~Kr~KphlRl~~~~Dllv~~~~f~~~~~~~~vhLncLLFvhrLAEEaRtnA~EnK~~~Ik~~Hv~AaaKviL 97 (102)
T PF15510_consen 18 PRGFLKRVFKRQKPHLRLETSGDLLVRFCPFSGWQWGGEVHLNCLLFVHRLAEEARTNACENKCGTIKKEHVLAAAKVIL 97 (102)
T ss_pred chHHHHHHHHhcCCceeecccccHHHhhcccccccccceeehhHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 3567899999988887764 3333 11233 222 3468899999999999999887
Q ss_pred h
Q 037475 77 L 77 (98)
Q Consensus 77 P 77 (98)
.
T Consensus 98 K 98 (102)
T PF15510_consen 98 K 98 (102)
T ss_pred H
Confidence 5
No 47
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=35.24 E-value=47 Score=28.77 Aligned_cols=29 Identities=24% Similarity=0.340 Sum_probs=24.4
Q ss_pred ccccccCCCCCCChHHHHHHHHHhchhHH
Q 037475 52 SRLARYKKKPTITSREIQTIVRLVLLGEL 80 (98)
Q Consensus 52 ~~La~~~kr~TltsreIqtAvrLlLPgeL 80 (98)
.-+|-.+.|.+++..||+.|++++|+.-+
T Consensus 235 rA~Aal~gr~~V~~~Dv~~a~~lvl~hR~ 263 (589)
T TIGR02031 235 KAHAALHGRTEVTEEDLKLAVELVLLPRA 263 (589)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhhhc
Confidence 33566899999999999999999997544
No 48
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=32.78 E-value=59 Score=26.68 Aligned_cols=29 Identities=24% Similarity=0.471 Sum_probs=25.1
Q ss_pred ccccccCCCCCCChHHHHHHHHHhchhHH
Q 037475 52 SRLARYKKKPTITSREIQTIVRLVLLGEL 80 (98)
Q Consensus 52 ~~La~~~kr~TltsreIqtAvrLlLPgeL 80 (98)
.-+|-.++|..+++.||+.+++++|+.-+
T Consensus 299 rA~Aal~GR~~V~pdDv~~~a~~vL~HR~ 327 (350)
T CHL00081 299 KALAAFEGRTEVTPKDIFKVITLCLRHRL 327 (350)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHHHhC
Confidence 44666899999999999999999998655
No 49
>KOG3334 consensus Transcription initiation factor TFIID, subunit TAF9 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=32.71 E-value=34 Score=25.45 Aligned_cols=25 Identities=16% Similarity=0.315 Sum_probs=21.1
Q ss_pred ccccccCCCCCCChHHHHHHHHHhc
Q 037475 52 SRLARYKKKPTITSREIQTIVRLVL 76 (98)
Q Consensus 52 ~~La~~~kr~TltsreIqtAvrLlL 76 (98)
.-.+.+.++.||+..||+.|+....
T Consensus 55 ~vys~HA~ka~i~~eDVrlA~~~~~ 79 (148)
T KOG3334|consen 55 KVYSSHAKKATIDAEDVRLAIQMRV 79 (148)
T ss_pred HHHHHhccCCCCcHHHHHHHHHHHh
Confidence 5567789999999999999988653
No 50
>TIGR02905 spore_yutH spore coat protein YutH. Members of this family are homologs of the Bacillus subtilis spore coat protein CotS. Members of this family, designated YutH, are found only in the family Bacillaceae from among the endospore-forming members of the Firmicutes branch of the Bacteria.
Probab=31.43 E-value=1.1e+02 Score=23.86 Aligned_cols=54 Identities=11% Similarity=0.159 Sum_probs=40.9
Q ss_pred HHHHHHHHh-hhhcCCCCchHHHHHhhhhccccccCCCCCCChHHHH-HHHHHhchhHHHHHHH
Q 037475 24 YKIYIFKVL-NQIYLDIGISSKAMGIMNTSRLARYKKKPTITSREIQ-TIVRLVLLGELAKHVA 85 (98)
Q Consensus 24 y~~YI~kVL-KqVhpd~gISskam~imns~~La~~~kr~TltsreIq-tAvrLlLPgeLaKhAv 85 (98)
...+|.|++ |....+.. .++.+++. |++-.+|+..|.. -..+|++|...-+.+-
T Consensus 223 L~~firk~~~k~~~~~~~---~~~~~l~~-----Y~~~~pL~~~e~~~l~~~L~FP~~fwk~~~ 278 (313)
T TIGR02905 223 LAEWIRERYMGEIRQNQR---AIASFLQE-----YEQAAPLTPFSWRLMYARLLFPLHYFETIE 278 (313)
T ss_pred HHHHHHHHHHHhccccHH---HHHHHHHH-----hhhcCCCCHHHHHHHHHHHcCcHHHHHHHH
Confidence 466788877 65533332 88899988 9999999999976 4678999998877654
No 51
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=28.42 E-value=68 Score=22.26 Aligned_cols=29 Identities=10% Similarity=0.304 Sum_probs=22.5
Q ss_pred hHHHHHHHHhhhhcCCC-C-------chHHHHHhhhh
Q 037475 23 TYKIYIFKVLNQIYLDI-G-------ISSKAMGIMNT 51 (98)
Q Consensus 23 sy~~YI~kVLKqVhpd~-g-------ISskam~imns 51 (98)
.....+......||||+ + +-.+++.++|+
T Consensus 10 ~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~ 46 (112)
T PF14687_consen 10 DLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNS 46 (112)
T ss_pred HHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHH
Confidence 45678888889999994 2 66778888877
No 52
>PF14374 Ribos_L4_asso_C: 60S ribosomal protein L4 C-terminal domain; PDB: 3O5H_D 3IZS_D 3O58_D 3IZR_D 4A17_C 4A1C_C 4A1E_C 4A1A_C.
Probab=27.66 E-value=8.4 Score=25.69 Aligned_cols=11 Identities=55% Similarity=0.842 Sum_probs=9.4
Q ss_pred CChHHHHHHHH
Q 037475 63 ITSREIQTIVR 73 (98)
Q Consensus 63 ltsreIqtAvr 73 (98)
|.|.|||++||
T Consensus 19 InSdEIQsvlr 29 (80)
T PF14374_consen 19 INSDEIQSVLR 29 (80)
T ss_dssp HHSHHHHCCCH
T ss_pred hccHHHHHHHh
Confidence 66789999987
No 53
>PF05798 Phage_FRD3: Bacteriophage FRD3 protein; InterPro: IPR008765 This is a group of proteins of unknown function from bacteriophage T2 and related phage.
Probab=26.40 E-value=29 Score=23.04 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=16.3
Q ss_pred HHHHHHhhhhcCCCCchH
Q 037475 26 IYIFKVLNQIYLDIGISS 43 (98)
Q Consensus 26 ~YI~kVLKqVhpd~gISs 43 (98)
-|++.|++..||.++|.+
T Consensus 12 EY~eEvIRNRyPelsi~s 29 (75)
T PF05798_consen 12 EYTEEVIRNRYPELSITS 29 (75)
T ss_pred HhHHHHHHccCCceEEEE
Confidence 599999999999999875
No 54
>cd07353 harmonin_N N-terminal protein-binding module of harmonin. Harmonin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein, which organizes the Usher protein network of the inner ear and the retina. Harmonin contains a single copy of this domain, which is found at the N-terminus of all three harmonin isoform classes (a, b and c), and which preceeds the first PDZ protein-binding domain, PDZ1. This harmonin_N domain binds specifically to a short internal peptide fragment of the cadherin 23 cytoplasmic domain; cadherin 23 is a component of the Usher protein network.
Probab=26.14 E-value=1.1e+02 Score=20.45 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=30.0
Q ss_pred chhHHHHHHHHhhhhcCCCCchHH---HHHhhhh-ccccccCCCCCCChHHHHHHHHHhch
Q 037475 21 IKTYKIYIFKVLNQIYLDIGISSK---AMGIMNT-SRLARYKKKPTITSREIQTIVRLVLL 77 (98)
Q Consensus 21 ~esy~~YI~kVLKqVhpd~gISsk---am~imns-~~La~~~kr~TltsreIqtAvrLlLP 77 (98)
.|.=..|+|-||++-|.-.+|..= --.++|+ .++ .+-.|+|-++|
T Consensus 18 ~EaEkd~lY~~Lr~YHqSm~lp~li~Dlk~VIN~P~R~------------pLfd~IR~lip 66 (79)
T cd07353 18 NEAEKDYLYDVLRMYHQSMNLPVLVGDLKLVINEPSRL------------PLFDAIRPLIP 66 (79)
T ss_pred cHHHHHHHHHHHHHHHhccCHHHHHHHHHHHhCCcccc------------chHHHHHhhcc
Confidence 355678999999999977666522 2235565 555 44567777776
No 55
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=25.65 E-value=94 Score=18.12 Aligned_cols=16 Identities=19% Similarity=-0.048 Sum_probs=12.5
Q ss_pred HHHHHHHHhhhhcCCC
Q 037475 24 YKIYIFKVLNQIYLDI 39 (98)
Q Consensus 24 y~~YI~kVLKqVhpd~ 39 (98)
-..-..++.++.|||.
T Consensus 17 ik~~y~~l~~~~HPD~ 32 (64)
T PF00226_consen 17 IKKAYRRLSKQYHPDK 32 (64)
T ss_dssp HHHHHHHHHHHTSTTT
T ss_pred HHHHHHhhhhcccccc
Confidence 3445678899999997
No 56
>TIGR02391 hypoth_ymh conserved hypothetical protein TIGR02391. This family consists of a relatively rare (~ 8 occurrences per 200 genomes) prokaryotic protein family. Genes for members are appear to be associated variously with phage and plasmid regions, restriction system loci, transposons, and housekeeping genes. The function is unknown.
Probab=24.88 E-value=63 Score=22.83 Aligned_cols=28 Identities=25% Similarity=0.137 Sum_probs=23.8
Q ss_pred HHHHHHHHhchhHHHHHHHhhhhhhhhc
Q 037475 67 EIQTIVRLVLLGELAKHVASEGTKAVTK 94 (98)
Q Consensus 67 eIqtAvrLlLPgeLaKhAvseGtkAV~k 94 (98)
+|..+++-++..+=--|||.|++|+|..
T Consensus 4 ~v~~~~~~~~~~g~Y~~AV~eA~K~v~~ 31 (125)
T TIGR02391 4 KVLGFCREELLLGNYFHAVFEAVKIVEE 31 (125)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 6778888888877789999999999864
No 57
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=23.38 E-value=49 Score=27.04 Aligned_cols=16 Identities=19% Similarity=0.146 Sum_probs=12.9
Q ss_pred HHHHHHhhhhcCCCCc
Q 037475 26 IYIFKVLNQIYLDIGI 41 (98)
Q Consensus 26 ~YI~kVLKqVhpd~gI 41 (98)
--+..+.||||||.|-
T Consensus 66 ~af~~lakq~hpdsgs 81 (342)
T KOG0568|consen 66 EAFHDLAKQVHPDSGS 81 (342)
T ss_pred HHHHHHHHHcCCCCCC
Confidence 3467889999999884
No 58
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=22.81 E-value=85 Score=24.94 Aligned_cols=53 Identities=17% Similarity=0.251 Sum_probs=32.7
Q ss_pred chhHHHHHHHHhhhhcCCCCchHHHHHhhhh------------------------------ccccccCCCCCCChHHHHH
Q 037475 21 IKTYKIYIFKVLNQIYLDIGISSKAMGIMNT------------------------------SRLARYKKKPTITSREIQT 70 (98)
Q Consensus 21 ~esy~~YI~kVLKqVhpd~gISskam~imns------------------------------~~La~~~kr~TltsreIqt 70 (98)
.+.+..||.-+=.+++| .+|.+|..++-. .-.|+..-+.+++..|++.
T Consensus 244 ~~~lr~yI~yar~~~~P--~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~ 321 (331)
T PF00493_consen 244 EDLLRKYIAYARQNIHP--VLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEE 321 (331)
T ss_dssp HCCCHHHHHHHHHHC----EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHH
T ss_pred HHHHHHHHHHHHhhccc--ccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHH
Confidence 45567787776558888 577777765533 2234456667777777777
Q ss_pred HHHHh
Q 037475 71 IVRLV 75 (98)
Q Consensus 71 AvrLl 75 (98)
|++|+
T Consensus 322 Ai~L~ 326 (331)
T PF00493_consen 322 AIRLF 326 (331)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77765
No 59
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=21.38 E-value=2.2e+02 Score=21.18 Aligned_cols=52 Identities=19% Similarity=0.296 Sum_probs=36.1
Q ss_pred hHHHHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHHhc
Q 037475 23 TYKIYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRLVL 76 (98)
Q Consensus 23 sy~~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrLlL 76 (98)
....||...++.. +..|+.+|...+-. .+|+.|.+..+||..+|+..+.-..
T Consensus 115 ~~~~~i~~~~~~~--g~~i~~~a~~~l~~~~~~d~~~l~~el~KL~~~~~~~~It~e~I~~~~~~~~ 179 (302)
T TIGR01128 115 ELPRWIQARLKKL--GLRIDPDAVQLLAELVEGNLLAIAQELEKLALYAPDGKITLEDVEEAVSDSA 179 (302)
T ss_pred HHHHHHHHHHHHc--CCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHhhhh
Confidence 3455666666664 57789988876533 6777786656899999987765433
No 60
>PF03477 ATP-cone: ATP cone domain; InterPro: IPR005144 The ATP-cone is an evolutionarily mobile, ATP-binding regulatory domain which is found in a variety of proteins including ribonucleotide reductases, phosphoglycerate kinases and transcriptional regulators []. In ribonucleotide reductase protein R1 (P28903 from SWISSPROT) from Escherichia coli this domain is located at the N terminus, and is composed mostly of helices []. It forms part of the allosteric effector region and contains the general allosteric activity site in a cleft located at the tip of the N-terminal region []. This site binds either ATP (activating) or dATP (inhibitory), with the base bound in a hydrophobic pocket and the phosphates bound to basic residues. Substrate binding to this site is thought to affect enzyme activity by altering the relative positions of the two subunits of ribonucleotide reductase.; PDB: 2XO4_A 1RLR_A 7R1R_B 5R1R_A 2XO5_B 2XAW_A 2R1R_C 2XAY_B 2X0X_C 2XAZ_A ....
Probab=20.90 E-value=1.7e+02 Score=18.24 Aligned_cols=56 Identities=23% Similarity=0.335 Sum_probs=29.2
Q ss_pred chhHHHH-HHHHhhhhc-CCCCchHH-HHHhhhh--ccccccCCCCCCChHHHHHHHHHhch
Q 037475 21 IKTYKIY-IFKVLNQIY-LDIGISSK-AMGIMNT--SRLARYKKKPTITSREIQTIVRLVLL 77 (98)
Q Consensus 21 ~esy~~Y-I~kVLKqVh-pd~gISsk-am~imns--~~La~~~kr~TltsreIqtAvrLlLP 77 (98)
.+.|..+ |.+.|.... ...+++.. +..|... ..|-..+ +..+|..|||.+|...|=
T Consensus 10 ~e~F~~~KI~~~i~~a~~~~~~~~~~~~~~i~~~V~~~l~~~~-~~~is~~eI~~~v~~~L~ 70 (90)
T PF03477_consen 10 VEPFDREKIVRAIEKACEASRELSEEDAEEIASEVENKLYDSG-KEEISTEEIQDIVENALM 70 (90)
T ss_dssp EEES-HHHHHHHHHTTCTTTSTTTST-HHHHHHHHHTC-ST-----TEEHHHHHHHHHHHHH
T ss_pred EeeecHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcc-CCCeeHHHHHHHHHHHHH
Confidence 4556555 777777776 33333322 2222222 2232222 238999999999986664
No 61
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=20.83 E-value=68 Score=27.66 Aligned_cols=47 Identities=17% Similarity=0.299 Sum_probs=29.6
Q ss_pred hhcCCCCchHHHHHhhhh----------------ccccccCCCCCCChHHHHHHHHHhchhHH
Q 037475 34 QIYLDIGISSKAMGIMNT----------------SRLARYKKKPTITSREIQTIVRLVLLGEL 80 (98)
Q Consensus 34 qVhpd~gISskam~imns----------------~~La~~~kr~TltsreIqtAvrLlLPgeL 80 (98)
|-||+.-.|...+.++.. .-|-+......||..|...|+..+|-|+.
T Consensus 168 QFHPEs~~T~~G~~il~NFl~~~~~~~~~~~~~~~~l~~~~~~~~Lt~eea~~~~~~il~g~~ 230 (531)
T PRK09522 168 QFHPESILTTQGARLLEQTLAWAQQKLEPTNTLQPILEKLYQAQTLSQQESHQLFSAVVRGEL 230 (531)
T ss_pred EecCccccCcchHHHHHHHHHHHhhcCCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHcCCC
Confidence 557776666666666555 11112224457888888888888887764
No 62
>COG2511 GatE Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain) [Translation, ribosomal structure and biogenesis]
Probab=20.03 E-value=1.1e+02 Score=27.44 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=32.0
Q ss_pred CCCChHHHHHHHHHhchhHHHHHHHhhhhhhhhcc
Q 037475 61 PTITSREIQTIVRLVLLGELAKHVASEGTKAVTKF 95 (98)
Q Consensus 61 ~TltsreIqtAvrLlLPgeLaKhAvseGtkAV~ky 95 (98)
..|+-+.|...++++.-|+++|.|+.|..+++...
T Consensus 518 ~~l~~~~i~~~~~~~~~g~iake~iee~l~~l~~~ 552 (631)
T COG2511 518 DNLDDEHIEELLRLVSEGKIAKEAIEEILKALAEN 552 (631)
T ss_pred ccCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhC
Confidence 45899999999999999999999999999998764
Done!