Query 037475
Match_columns 98
No_of_seqs 105 out of 317
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 21:55:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037475.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037475hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nqb_D Histone H2B; nucleosome 100.0 9.1E-47 3.1E-51 267.3 4.7 88 11-98 22-122 (123)
2 1tzy_B Histone H2B; histone-fo 100.0 8.7E-47 3E-51 268.3 4.5 87 12-98 26-125 (126)
3 2jss_A Chimera of histone H2B. 100.0 2E-33 7E-38 208.6 5.5 78 20-97 1-91 (192)
4 3b0c_W CENP-W, centromere prot 99.2 8.5E-12 2.9E-16 80.2 2.8 53 25-77 7-72 (76)
5 1b67_A Protein (histone HMFA); 98.2 6E-07 2.1E-11 55.7 2.1 48 27-75 7-67 (68)
6 1f1e_A Histone fold protein; a 97.4 9.4E-05 3.2E-09 53.4 3.2 51 27-78 87-150 (154)
7 3ksy_A SOS-1, SON of sevenless 97.0 0.0009 3.1E-08 58.9 6.1 70 21-93 20-95 (1049)
8 1n1j_A NF-YB; histone-like PAI 96.2 0.0043 1.5E-07 40.3 3.5 48 26-73 12-73 (93)
9 1ku5_A HPHA, archaeal histon; 96.0 0.0041 1.4E-07 38.5 2.5 47 26-73 10-69 (70)
10 1jfi_B DR1 protein, transcript 95.8 0.01 3.5E-07 43.8 4.4 50 25-74 18-80 (179)
11 2yfw_B Histone H4, H4; cell cy 95.7 0.0053 1.8E-07 41.0 2.5 50 25-75 32-94 (103)
12 1tzy_D Histone H4-VI; histone- 95.7 0.0057 1.9E-07 40.8 2.4 50 25-75 32-94 (103)
13 1n1j_B NF-YC; histone-like PAI 95.2 0.011 3.7E-07 39.0 2.4 47 26-73 23-83 (97)
14 2byk_B Chrac-14; nucleosome sl 95.1 0.02 7E-07 39.7 3.7 49 27-75 14-76 (128)
15 2hue_B Histone H3; mini beta s 94.8 0.029 9.9E-07 36.2 3.6 52 23-74 8-72 (77)
16 4g92_C HAPE; transcription fac 94.5 0.016 5.6E-07 39.5 2.0 47 26-73 45-105 (119)
17 2f8n_G Core histone macro-H2A. 94.5 0.022 7.4E-07 39.3 2.7 48 26-73 26-86 (120)
18 2nqb_C Histone H2A; nucleosome 94.3 0.025 8.4E-07 39.2 2.6 48 26-73 27-87 (123)
19 3nqj_A Histone H3-like centrom 94.2 0.045 1.5E-06 35.8 3.5 52 23-74 8-74 (82)
20 1tzy_A Histone H2A-IV; histone 93.9 0.035 1.2E-06 38.7 2.8 48 26-73 29-89 (129)
21 1id3_C Histone H2A.1; nucleoso 93.9 0.025 8.7E-07 39.5 2.0 49 25-73 28-89 (131)
22 1f1e_A Histone fold protein; a 93.8 0.047 1.6E-06 39.2 3.4 48 27-74 9-69 (154)
23 2f8n_K Histone H2A type 1; nuc 93.4 0.038 1.3E-06 39.6 2.3 48 26-73 48-108 (149)
24 1f66_C Histone H2A.Z; nucleoso 93.1 0.052 1.8E-06 37.8 2.5 48 26-73 31-92 (128)
25 3b0c_T CENP-T, centromere prot 92.9 0.067 2.3E-06 36.2 2.8 49 25-74 10-71 (111)
26 2yfv_A Histone H3-like centrom 92.7 0.077 2.6E-06 35.7 2.8 52 23-74 32-99 (100)
27 1tzy_C Histone H3; histone-fol 92.7 0.11 3.6E-06 36.8 3.6 51 24-74 68-131 (136)
28 1id3_B Histone H4; nucleosome 92.3 0.073 2.5E-06 35.5 2.4 50 25-75 31-93 (102)
29 1jfi_A Transcription regulator 91.7 0.043 1.5E-06 36.2 0.6 48 25-73 14-75 (98)
30 2jss_A Chimera of histone H2B. 91.2 0.13 4.6E-06 37.5 2.8 48 26-73 109-170 (192)
31 3nqu_A Histone H3-like centrom 91.1 0.14 4.8E-06 36.4 2.8 38 38-75 83-133 (140)
32 2hue_C Histone H4; mini beta s 91.0 0.073 2.5E-06 34.1 1.2 50 25-75 13-75 (84)
33 3r45_A Histone H3-like centrom 90.5 0.14 4.7E-06 37.2 2.3 47 28-74 83-148 (156)
34 1taf_B TFIID TBP associated fa 90.4 0.24 8.3E-06 31.3 3.2 47 27-74 11-70 (70)
35 1h3o_B Transcription initiatio 89.9 0.31 1.1E-05 31.3 3.5 46 28-73 11-69 (76)
36 2byk_A Chrac-16; nucleosome sl 86.3 0.41 1.4E-05 33.6 2.5 47 26-73 23-84 (140)
37 4dra_A Centromere protein S; D 79.8 0.75 2.6E-05 31.6 1.6 48 27-74 32-94 (113)
38 3v9r_A MHF1, uncharacterized p 78.6 1.3 4.5E-05 29.0 2.5 46 28-73 18-78 (90)
39 1taf_A TFIID TBP associated fa 77.5 3.2 0.00011 25.8 3.9 25 52-76 43-67 (68)
40 2l5a_A Histone H3-like centrom 74.1 2.5 8.6E-05 32.3 3.3 55 20-74 13-83 (235)
41 3b0b_B CENP-S, centromere prot 72.1 1.2 4.2E-05 30.0 1.0 48 27-74 24-86 (107)
42 3vh5_A CENP-S; histone fold, c 64.3 2.3 8E-05 30.2 1.2 47 28-74 25-86 (140)
43 2ly8_A Budding yeast chaperone 57.3 20 0.00067 24.6 4.9 23 52-74 89-111 (121)
44 2v4x_A JSRV capsid, capsid pro 35.7 20 0.00068 25.2 2.1 43 30-78 20-63 (140)
45 3mn5_S Protein spire, actin, a 35.5 7.1 0.00024 22.0 -0.2 10 29-38 27-36 (38)
46 2l5a_A Histone H3-like centrom 35.4 24 0.00082 26.8 2.7 24 52-75 203-226 (235)
47 3ksy_A SOS-1, SON of sevenless 32.5 35 0.0012 30.0 3.6 47 26-73 108-167 (1049)
48 2guz_A Mitochondrial import in 31.4 25 0.00085 20.9 1.8 22 26-47 34-55 (71)
49 1bh9_B TAFII28; histone fold, 26.6 1E+02 0.0035 19.6 4.3 48 28-76 22-83 (89)
50 4afj_X Proto-oncogene FRAT1; t 25.6 28 0.00094 18.7 1.1 15 73-87 9-23 (30)
51 1d6g_A CCK-A-receptor, cholecy 24.3 15 0.0005 21.7 -0.2 13 64-76 35-47 (47)
52 2ctr_A DNAJ homolog subfamily 23.4 1.3E+02 0.0044 18.1 5.2 49 27-91 27-75 (88)
53 3lti_A DNA-directed RNA polyme 22.3 1.6E+02 0.0056 22.8 5.4 50 24-76 215-286 (296)
54 1faf_A Large T antigen; J doma 22.0 45 0.0015 20.2 1.8 21 27-47 33-53 (79)
55 2kgf_A Capsid protein P27; ret 20.4 50 0.0017 23.1 1.9 44 29-78 24-68 (140)
No 1
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=100.00 E-value=9.1e-47 Score=267.33 Aligned_cols=88 Identities=64% Similarity=0.871 Sum_probs=79.4
Q ss_pred ccccccccccchhHHHHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHHhch
Q 037475 11 DKKKKRAKKSIKTYKIYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRLVLL 77 (98)
Q Consensus 11 ~~~kk~~~~r~esy~~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrLlLP 77 (98)
+.++++++++.|+|++||||||||||||+|||++||+|||| ++|++||+|+|||+||||+|||||||
T Consensus 22 ~~~~k~~~~~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLp 101 (123)
T 2nqb_D 22 KTDKKKKRKRKESYAIYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLP 101 (123)
T ss_dssp -------CCCCCCSHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHSC
T ss_pred CCCCCCCccccchHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHhCc
Confidence 34566778899999999999999999999999999999999 99999999999999999999999999
Q ss_pred hHHHHHHHhhhhhhhhcccCC
Q 037475 78 GELAKHVASEGTKAVTKFASF 98 (98)
Q Consensus 78 geLaKhAvseGtkAV~ky~s~ 98 (98)
||||||||+||++||++|+++
T Consensus 102 GELaKhAvseGtkAV~ky~ss 122 (123)
T 2nqb_D 102 GELAKHAVSEGTKAVTKYTSS 122 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcccCC
Confidence 999999999999999999875
No 2
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=100.00 E-value=8.7e-47 Score=268.32 Aligned_cols=87 Identities=67% Similarity=0.906 Sum_probs=77.7
Q ss_pred cccccccccchhHHHHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHHhchh
Q 037475 12 KKKKRAKKSIKTYKIYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRLVLLG 78 (98)
Q Consensus 12 ~~kk~~~~r~esy~~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrLlLPg 78 (98)
+++++++++.++|++||||||||||||+|||++||+|||| ++|++||+|+|||+||||+||||||||
T Consensus 26 ~~~k~~~~~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpG 105 (126)
T 1tzy_B 26 GDKKRKKSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPG 105 (126)
T ss_dssp --------CCCCCHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSCH
T ss_pred CCCCccccccccHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCcH
Confidence 3466778899999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhcccCC
Q 037475 79 ELAKHVASEGTKAVTKFASF 98 (98)
Q Consensus 79 eLaKhAvseGtkAV~ky~s~ 98 (98)
|||||||+||++||++|+++
T Consensus 106 ELaKhAvseGtkAV~ky~ss 125 (126)
T 1tzy_B 106 ELAKHAVSEGTKAVTKYTSS 125 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcccCC
Confidence 99999999999999999875
No 3
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=99.98 E-value=2e-33 Score=208.63 Aligned_cols=78 Identities=62% Similarity=0.871 Sum_probs=75.1
Q ss_pred cchhHHHHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHHhchhHHHHHHHh
Q 037475 20 SIKTYKIYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRLVLLGELAKHVAS 86 (98)
Q Consensus 20 r~esy~~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrLlLPgeLaKhAvs 86 (98)
++|+|+.||||||||||||++||++||++||+ ++|+++++++|||+||||+||||+|||||+|||++
T Consensus 1 ~~~~~~~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~lpgeLak~Av~ 80 (192)
T 2jss_A 1 RKETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVS 80 (192)
T ss_dssp CCSTTHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHSCSHHHHHHHH
T ss_pred CcchHHHHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHHHHHHHHH
Confidence 46899999999999999999999999999999 88999999999999999999999999999999999
Q ss_pred hhhhhhhcccC
Q 037475 87 EGTKAVTKFAS 97 (98)
Q Consensus 87 eGtkAV~ky~s 97 (98)
||++||++|++
T Consensus 81 eG~kAv~k~~~ 91 (192)
T 2jss_A 81 EGTRAVTKYSS 91 (192)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhcc
Confidence 99999999953
No 4
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.18 E-value=8.5e-12 Score=80.20 Aligned_cols=53 Identities=9% Similarity=0.093 Sum_probs=49.1
Q ss_pred HHHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHHhch
Q 037475 25 KIYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRLVLL 77 (98)
Q Consensus 25 ~~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrLlLP 77 (98)
..+|+|++||+|||.+||++|+.+|+. ..+|+.++|.||+++||+.|++.+|-
T Consensus 7 ~A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ll~ 72 (76)
T 3b0c_W 7 RGTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVILK 72 (76)
T ss_dssp HHHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999999988 68888999999999999999999874
No 5
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=98.18 E-value=6e-07 Score=55.70 Aligned_cols=48 Identities=17% Similarity=0.197 Sum_probs=42.3
Q ss_pred HHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHHh
Q 037475 27 YIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRLV 75 (98)
Q Consensus 27 YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrLl 75 (98)
=|.|++|++ ++..||+.|+..|.. ...+.+.+|.||+++|||.|++.|
T Consensus 7 ~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 7 PIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp HHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred HHHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 378999999 889999999988876 567789999999999999998865
No 6
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=97.40 E-value=9.4e-05 Score=53.44 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=46.1
Q ss_pred HHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHHhchh
Q 037475 27 YIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRLVLLG 78 (98)
Q Consensus 27 YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrLlLPg 78 (98)
=|.|++|+. ....||+.|...|.. ..++++.+|+||+++||+.|++..||.
T Consensus 87 ~V~Ri~k~~-g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~~~~ 150 (154)
T 1f1e_A 87 TVRRILKRA-GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYSMPK 150 (154)
T ss_dssp HHHHHHHHT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSGG
T ss_pred HHHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhcCCc
Confidence 388999998 678999999987766 889999999999999999999999993
No 7
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=97.03 E-value=0.0009 Score=58.92 Aligned_cols=70 Identities=11% Similarity=0.127 Sum_probs=62.4
Q ss_pred chhHHHHHHHHhhhhcCCCCchHHHHHhhhh------ccccccCCCCCCChHHHHHHHHHhchhHHHHHHHhhhhhhhh
Q 037475 21 IKTYKIYIFKVLNQIYLDIGISSKAMGIMNT------SRLARYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAVT 93 (98)
Q Consensus 21 ~esy~~YI~kVLKqVhpd~gISskam~imns------~~La~~~kr~TltsreIqtAvrLlLPgeLaKhAvseGtkAV~ 93 (98)
..-|-.-|+|||.||||++.|.-.|..-+++ +.||. ....|..|++.+|.-.+|..|.+.|+.++..|+.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (1049)
T 3ksy_A 20 RGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNMLCQ---AQPRSASDVEERVQKSFPHPIDKWAIADAQSAIE 95 (1049)
T ss_dssp SSSSHHHHHHHHHHHCTTSBCCHHHHHHHHHHHHHHHHHHHH---TCCCSHHHHHHHHHHHSCTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCCccHhHHHHHHHHHHHHHHHHhc---CCCccHHHHHHHHHHhCCCchHHHHHHHHHHhhh
Confidence 4568888999999999999999999999988 66765 7888999999999999999999999999877643
No 8
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=96.18 E-value=0.0043 Score=40.35 Aligned_cols=48 Identities=15% Similarity=0.174 Sum_probs=40.1
Q ss_pred HHHHHHhhhhcCC-CCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHH
Q 037475 26 IYIFKVLNQIYLD-IGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVR 73 (98)
Q Consensus 26 ~YI~kVLKqVhpd-~gISskam~imns-------------~~La~~~kr~TltsreIqtAvr 73 (98)
.=|.|+.|..-|| ..||+.|...|.- ...+...+|.||+..||+.|++
T Consensus 12 a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~ 73 (93)
T 1n1j_A 12 ANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS 73 (93)
T ss_dssp HHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred hHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 3488999999775 6799998877655 4566789999999999999997
No 9
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=95.98 E-value=0.0041 Score=38.53 Aligned_cols=47 Identities=13% Similarity=0.226 Sum_probs=37.6
Q ss_pred HHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHH
Q 037475 26 IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVR 73 (98)
Q Consensus 26 ~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvr 73 (98)
.-|.|++|.. ....||+.|...+-- ...+.+.+|.||+.+||+.|++
T Consensus 10 a~v~Rl~r~~-g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 10 APVDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp HHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred HHHHHHHHHc-CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 3578889986 467889888765433 6778899999999999999975
No 10
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=95.78 E-value=0.01 Score=43.76 Aligned_cols=50 Identities=12% Similarity=0.246 Sum_probs=42.7
Q ss_pred HHHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHH
Q 037475 25 KIYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRL 74 (98)
Q Consensus 25 ~~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrL 74 (98)
..=|.|++|.+-|+..||.+|...|.- ..+|...+|+||+..||..|+.-
T Consensus 18 ~A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~ 80 (179)
T 1jfi_B 18 RAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALES 80 (179)
T ss_dssp HHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHh
Confidence 345899999999989999999987755 56677899999999999999874
No 11
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=95.74 E-value=0.0053 Score=41.00 Aligned_cols=50 Identities=16% Similarity=0.068 Sum_probs=40.7
Q ss_pred HHHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHHh
Q 037475 25 KIYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRLV 75 (98)
Q Consensus 25 ~~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrLl 75 (98)
.--|.|+++..-. ..||..|..-+.. ..++++.+|.||+++||+.|++-+
T Consensus 32 ~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~ 94 (103)
T 2yfw_B 32 KPAIRRLARRGGV-KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 3458899998866 5788887765444 778889999999999999999855
No 12
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=95.65 E-value=0.0057 Score=40.78 Aligned_cols=50 Identities=14% Similarity=0.039 Sum_probs=40.7
Q ss_pred HHHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHHh
Q 037475 25 KIYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRLV 75 (98)
Q Consensus 25 ~~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrLl 75 (98)
.--|.|+++..-. ..||..|..-+.. ..++++.+|.||+++||+.|++-+
T Consensus 32 ~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 32 KPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHc
Confidence 4568999999876 5788887765443 778889999999999999999854
No 13
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=95.17 E-value=0.011 Score=38.97 Aligned_cols=47 Identities=19% Similarity=0.167 Sum_probs=36.9
Q ss_pred HHHHHHhhhhcCCC-CchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHH
Q 037475 26 IYIFKVLNQIYLDI-GISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVR 73 (98)
Q Consensus 26 ~YI~kVLKqVhpd~-gISskam~imns-------------~~La~~~kr~TltsreIqtAvr 73 (98)
.=|.|++|.- |+. .||..|--.|.- ...+..++|.||+.+||+.||+
T Consensus 23 arIkrImK~~-~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~ 83 (97)
T 1n1j_B 23 ARIKKIMKLD-EDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAIT 83 (97)
T ss_dssp HHHHHHHTTS-TTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred HHHHHHHccC-ccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHh
Confidence 3488999986 775 588877765544 5566789999999999999986
No 14
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=95.07 E-value=0.02 Score=39.68 Aligned_cols=49 Identities=18% Similarity=0.285 Sum_probs=40.8
Q ss_pred HHHHHhhhhcCC-CCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHHh
Q 037475 27 YIFKVLNQIYLD-IGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRLV 75 (98)
Q Consensus 27 YI~kVLKqVhpd-~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrLl 75 (98)
-|.|++|++-|| ..||..|...|.- ..++...+|+||+..||..|+.-+
T Consensus 14 ~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l 76 (128)
T 2byk_B 14 VIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTEL 76 (128)
T ss_dssp HHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHT
T ss_pred HHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHc
Confidence 388999998886 6799999887765 556778999999999999998754
No 15
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=94.78 E-value=0.029 Score=36.23 Aligned_cols=52 Identities=19% Similarity=0.259 Sum_probs=39.6
Q ss_pred hHHHHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHH
Q 037475 23 TYKIYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRL 74 (98)
Q Consensus 23 sy~~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrL 74 (98)
.|..-+..+.....+|..+++.|+..+-- ..++.+.||.||.++|||-|.|+
T Consensus 8 PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~ri 72 (77)
T 2hue_B 8 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRI 72 (77)
T ss_dssp HHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHH
Confidence 45555555555556788899998865533 55678999999999999999885
No 16
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=94.51 E-value=0.016 Score=39.53 Aligned_cols=47 Identities=21% Similarity=0.169 Sum_probs=36.7
Q ss_pred HHHHHHhhhhcCCC-CchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHH
Q 037475 26 IYIFKVLNQIYLDI-GISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVR 73 (98)
Q Consensus 26 ~YI~kVLKqVhpd~-gISskam~imns-------------~~La~~~kr~TltsreIqtAvr 73 (98)
.=|.|++|.. ||. .||+.|.-.+.- ...|+-++|+||+.+||+.||+
T Consensus 45 aRIkrImK~d-~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~ 105 (119)
T 4g92_C 45 ARIKKVMKAD-PEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALS 105 (119)
T ss_dssp HHHHHHHHTS-TTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred HHHHHHHhhC-CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHh
Confidence 3488999876 664 588777655543 5567789999999999999986
No 17
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=94.50 E-value=0.022 Score=39.29 Aligned_cols=48 Identities=23% Similarity=0.138 Sum_probs=37.9
Q ss_pred HHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHH
Q 037475 26 IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVR 73 (98)
Q Consensus 26 ~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvr 73 (98)
..|+|+||...---.||..|--.|-. ...++.+++.+|++++||.|++
T Consensus 26 ~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~ 86 (120)
T 2f8n_G 26 GRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA 86 (120)
T ss_dssp HHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 46999999986555788776543332 6778889999999999999998
No 18
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=94.34 E-value=0.025 Score=39.17 Aligned_cols=48 Identities=23% Similarity=0.221 Sum_probs=38.0
Q ss_pred HHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHH
Q 037475 26 IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVR 73 (98)
Q Consensus 26 ~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvr 73 (98)
..|+|+||+..---.||..|.-.|.. ...++.+++.+|++++||.|++
T Consensus 27 ~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 87 (123)
T 2nqb_C 27 GRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 87 (123)
T ss_dssp HHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHh
Confidence 57999999974444788776643333 6677889999999999999998
No 19
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=94.16 E-value=0.045 Score=35.75 Aligned_cols=52 Identities=12% Similarity=0.169 Sum_probs=37.4
Q ss_pred hHHHHHHHHhhhhc--CCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHH
Q 037475 23 TYKIYIFKVLNQIY--LDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRL 74 (98)
Q Consensus 23 sy~~YI~kVLKqVh--pd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrL 74 (98)
.|..-+..+-.+.. .|..+++.|+..+-- ...|.+.||.||.++|||-|.|+
T Consensus 8 PF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~ri 74 (82)
T 3nqj_A 8 PFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI 74 (82)
T ss_dssp HHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHH
Confidence 45555555554444 367888888875533 45567889999999999999986
No 20
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=93.91 E-value=0.035 Score=38.69 Aligned_cols=48 Identities=21% Similarity=0.215 Sum_probs=37.7
Q ss_pred HHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHH
Q 037475 26 IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVR 73 (98)
Q Consensus 26 ~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvr 73 (98)
..|+|+||...---.||..|.-.|.. ...++.+++.+|++++||.|++
T Consensus 29 ~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 89 (129)
T 1tzy_A 29 GRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (129)
T ss_dssp HHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 46999999964444788776643333 6778889999999999999998
No 21
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=93.89 E-value=0.025 Score=39.53 Aligned_cols=49 Identities=24% Similarity=0.224 Sum_probs=37.2
Q ss_pred HHHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHH
Q 037475 25 KIYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVR 73 (98)
Q Consensus 25 ~~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvr 73 (98)
-..|+|+||...---.||..|.-.|-. ...++.+++.+|++++||.|++
T Consensus 28 V~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~ 89 (131)
T 1id3_C 28 VGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (131)
T ss_dssp HHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 357999999864334677665543322 6778889999999999999998
No 22
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=93.84 E-value=0.047 Score=39.22 Aligned_cols=48 Identities=13% Similarity=0.143 Sum_probs=40.7
Q ss_pred HHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHH
Q 037475 27 YIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRL 74 (98)
Q Consensus 27 YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrL 74 (98)
=|-|++|+.-|+..||..|-.-+.. ..++...+|+||+..||..|+.-
T Consensus 9 ~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~ 69 (154)
T 1f1e_A 9 AIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADV 69 (154)
T ss_dssp HHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHh
Confidence 3789999998899999988765544 77889999999999999999844
No 23
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=93.43 E-value=0.038 Score=39.60 Aligned_cols=48 Identities=21% Similarity=0.220 Sum_probs=37.2
Q ss_pred HHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHH
Q 037475 26 IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVR 73 (98)
Q Consensus 26 ~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvr 73 (98)
..|+|+||...---.|+..|.-.|-. ...++.+++.+|++++||.|++
T Consensus 48 grI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~ 108 (149)
T 2f8n_K 48 GRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 108 (149)
T ss_dssp HHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHh
Confidence 46999999974444777766543332 6778889999999999999998
No 24
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=93.12 E-value=0.052 Score=37.80 Aligned_cols=48 Identities=19% Similarity=0.115 Sum_probs=36.1
Q ss_pred HHHHHHhhhhcC-CCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHH
Q 037475 26 IYIFKVLNQIYL-DIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVR 73 (98)
Q Consensus 26 ~YI~kVLKqVhp-d~gISskam~imns-------------~~La~~~kr~TltsreIqtAvr 73 (98)
..|+|+||.... ...||+.|.-.|-. ...++.+++.+|++++||.||+
T Consensus 31 ~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~ 92 (128)
T 1f66_C 31 GRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 92 (128)
T ss_dssp HHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 469999998753 23577665533322 6778899999999999999998
No 25
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=92.89 E-value=0.067 Score=36.19 Aligned_cols=49 Identities=10% Similarity=0.253 Sum_probs=39.7
Q ss_pred HHHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHH
Q 037475 25 KIYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRL 74 (98)
Q Consensus 25 ~~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrL 74 (98)
...|.|+.|.. ....||..+...+.. ..++++.+|+||+..||..|++-
T Consensus 10 ~a~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr 71 (111)
T 3b0c_T 10 SSLIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRR 71 (111)
T ss_dssp CHHHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 34678887776 678899988875544 66788999999999999999874
No 26
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=92.69 E-value=0.077 Score=35.70 Aligned_cols=52 Identities=21% Similarity=0.231 Sum_probs=36.2
Q ss_pred hHHHHHHHHhhhhcC---CCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHH
Q 037475 23 TYKIYIFKVLNQIYL---DIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRL 74 (98)
Q Consensus 23 sy~~YI~kVLKqVhp---d~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrL 74 (98)
-|..-+..+.....+ |..+++.|+..+-- ..+|.+.||.||.++|||-|.|+
T Consensus 32 PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ri 99 (100)
T 2yfv_A 32 PFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARRI 99 (100)
T ss_dssp HHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHC
T ss_pred cHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHh
Confidence 445445555444444 67888888865533 55678999999999999999875
No 27
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=92.67 E-value=0.11 Score=36.83 Aligned_cols=51 Identities=20% Similarity=0.263 Sum_probs=37.9
Q ss_pred HHHHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHH
Q 037475 24 YKIYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRL 74 (98)
Q Consensus 24 y~~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrL 74 (98)
|..-|..+.....+|..+++.|+..|-- ..++.+.+|.||.++|||-|.|+
T Consensus 68 F~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ri 131 (136)
T 1tzy_C 68 FQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
T ss_dssp HHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHH
Confidence 4444444444446788999998865533 55678999999999999999885
No 28
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=92.35 E-value=0.073 Score=35.52 Aligned_cols=50 Identities=16% Similarity=0.069 Sum_probs=39.7
Q ss_pred HHHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHHh
Q 037475 25 KIYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRLV 75 (98)
Q Consensus 25 ~~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrLl 75 (98)
.-.|.|+.+..-. ..||..+...+.. ..++++.+|.|||..||..|++-+
T Consensus 31 ~~~I~Rlar~~Gv-~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 31 KPAIRRLARRGGV-KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp HHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCc-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 4568899998743 5688887765544 778889999999999999998854
No 29
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=91.70 E-value=0.043 Score=36.20 Aligned_cols=48 Identities=10% Similarity=0.191 Sum_probs=33.7
Q ss_pred HHHHHHHhhhhcCC-CCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHH
Q 037475 25 KIYIFKVLNQIYLD-IGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVR 73 (98)
Q Consensus 25 ~~YI~kVLKqVhpd-~gISskam~imns-------------~~La~~~kr~TltsreIqtAvr 73 (98)
-.=|.|++|. .|| ..||..|--.+.- ...++.+++.||+.+||+.||+
T Consensus 14 vaRIkrimK~-~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~ 75 (98)
T 1jfi_A 14 PARIKKIMQT-DEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIE 75 (98)
T ss_dssp HHHHHHHHTT-STTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC
T ss_pred hHHHHHHHHc-CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHh
Confidence 3458899997 566 4588776654443 5667789999999999999986
No 30
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=91.16 E-value=0.13 Score=37.46 Aligned_cols=48 Identities=25% Similarity=0.194 Sum_probs=36.1
Q ss_pred HHHHHHhhhhcC-CCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHH
Q 037475 26 IYIFKVLNQIYL-DIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVR 73 (98)
Q Consensus 26 ~YI~kVLKqVhp-d~gISskam~imns-------------~~La~~~kr~TltsreIqtAvr 73 (98)
..|+|.||...- ...|+..|.-.|-. ...++.+++.+|++++||.|++
T Consensus 109 ~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~ 170 (192)
T 2jss_A 109 GRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIR 170 (192)
T ss_dssp HHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred HHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHh
Confidence 469999998733 34577665533322 6778889999999999999998
No 31
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=91.10 E-value=0.14 Score=36.45 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=29.9
Q ss_pred CCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHHh
Q 037475 38 DIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRLV 75 (98)
Q Consensus 38 d~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrLl 75 (98)
|..+++.|+..|-- ..+|.+.+|.||..+|||-|.|+-
T Consensus 83 ~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrir 133 (140)
T 3nqu_A 83 DFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIR 133 (140)
T ss_dssp CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred cceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhc
Confidence 67788888865533 445678899999999999999863
No 32
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=91.01 E-value=0.073 Score=34.11 Aligned_cols=50 Identities=14% Similarity=0.039 Sum_probs=38.0
Q ss_pred HHHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHHh
Q 037475 25 KIYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRLV 75 (98)
Q Consensus 25 ~~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrLl 75 (98)
.-.|.|+.+..-. ..||..+...+.. ..++++.+|+||+..||..|++-+
T Consensus 13 ~~~I~Riar~~Gv-~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 13 KPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp HHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred HHHHHHHHHHcCc-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 3457888887743 5688777654433 778889999999999999997743
No 33
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=90.46 E-value=0.14 Score=37.19 Aligned_cols=47 Identities=15% Similarity=0.235 Sum_probs=34.0
Q ss_pred HHHHhhhhc------CCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHH
Q 037475 28 IFKVLNQIY------LDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRL 74 (98)
Q Consensus 28 I~kVLKqVh------pd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrL 74 (98)
|-|+++++- .|..+++.|+..|-- ..+|.+.+|.||..+|||-|.|+
T Consensus 83 F~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrI 148 (156)
T 3r45_A 83 FSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI 148 (156)
T ss_dssp HHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHH
Confidence 445555554 256688888765533 44556789999999999999986
No 34
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=90.41 E-value=0.24 Score=31.26 Aligned_cols=47 Identities=13% Similarity=0.219 Sum_probs=33.6
Q ss_pred HHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHH
Q 037475 27 YIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRL 74 (98)
Q Consensus 27 YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrL 74 (98)
.|.++.+++-= ..+|.++...+-. .+++++.+|.|||..||..|+++
T Consensus 11 ~v~~iaes~Gi-~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk~ 70 (70)
T 1taf_B 11 SMKVIAESIGV-GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV 70 (70)
T ss_dssp HHHHHHHHTTC-CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC-
T ss_pred HHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHcC
Confidence 35566666532 2566666655433 88999999999999999999764
No 35
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=89.92 E-value=0.31 Score=31.26 Aligned_cols=46 Identities=13% Similarity=0.321 Sum_probs=38.0
Q ss_pred HHHHhhhhcCCCCchHHHHHhh----h----h-----ccccccCCCCCCChHHHHHHHH
Q 037475 28 IFKVLNQIYLDIGISSKAMGIM----N----T-----SRLARYKKKPTITSREIQTIVR 73 (98)
Q Consensus 28 I~kVLKqVhpd~gISskam~im----n----s-----~~La~~~kr~TltsreIqtAvr 73 (98)
+...++||-|...|...+.+.+ | + ++||.+.+..||..+|||....
T Consensus 11 L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Le 69 (76)
T 1h3o_B 11 LQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLE 69 (76)
T ss_dssp HHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 5678999999999998877533 2 2 9999999999999999997643
No 36
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=86.28 E-value=0.41 Score=33.60 Aligned_cols=47 Identities=11% Similarity=0.236 Sum_probs=32.2
Q ss_pred HHHHHHhhhhcCCCC-chHHHHHhhhh-------------cccc-ccCCCCCCChHHHHHHHH
Q 037475 26 IYIFKVLNQIYLDIG-ISSKAMGIMNT-------------SRLA-RYKKKPTITSREIQTIVR 73 (98)
Q Consensus 26 ~YI~kVLKqVhpd~g-ISskam~imns-------------~~La-~~~kr~TltsreIqtAvr 73 (98)
.=|.|++|.- |+.+ ||..|.-+|.- ...+ .-++|.||+.++|..||.
T Consensus 23 aRIKrIMK~d-pdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~ 84 (140)
T 2byk_A 23 SRVRTIMKSS-MDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVN 84 (140)
T ss_dssp ------CCSS-SSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHH
T ss_pred HHHHHHHhcC-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHh
Confidence 3488888886 8854 78777665544 4556 789999999999999997
No 37
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=79.82 E-value=0.75 Score=31.60 Aligned_cols=48 Identities=17% Similarity=0.331 Sum_probs=37.9
Q ss_pred HHHHHhhhhcC--CCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHH
Q 037475 27 YIFKVLNQIYL--DIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRL 74 (98)
Q Consensus 27 YI~kVLKqVhp--d~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrL 74 (98)
-|-|+++++-. +..+|.+++..|-- ..+|+..+|+||+..||..|+|-
T Consensus 32 ~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr 94 (113)
T 4dra_A 32 TVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARR 94 (113)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHh
Confidence 36788877743 56799998875544 67888999999999999999873
No 38
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=78.60 E-value=1.3 Score=29.04 Aligned_cols=46 Identities=15% Similarity=0.258 Sum_probs=35.0
Q ss_pred HHHHhhhhcC--CCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHH
Q 037475 28 IFKVLNQIYL--DIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVR 73 (98)
Q Consensus 28 I~kVLKqVhp--d~gISskam~imns-------------~~La~~~kr~TltsreIqtAvr 73 (98)
+-++..++-+ +..+|..++..|-- ..+|++.+|+||+..||..|+|
T Consensus 18 V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~R 78 (90)
T 3v9r_A 18 VEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLR 78 (90)
T ss_dssp HHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred HHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 4555666644 35688888875544 6788899999999999998877
No 39
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=77.48 E-value=3.2 Score=25.78 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=21.7
Q ss_pred ccccccCCCCCCChHHHHHHHHHhc
Q 037475 52 SRLARYKKKPTITSREIQTIVRLVL 76 (98)
Q Consensus 52 ~~La~~~kr~TltsreIqtAvrLlL 76 (98)
..++.+.+|.||+..||+.|+...+
T Consensus 43 ~~~a~HAgrktv~~eDVkLAi~~~~ 67 (68)
T 1taf_A 43 KVYANHARKKTIDLDDVRLATEVTL 67 (68)
T ss_dssp HHHHHHTTCSSBCHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCCHHHHHHHHHhcc
Confidence 6788899999999999999987543
No 40
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=74.07 E-value=2.5 Score=32.27 Aligned_cols=55 Identities=22% Similarity=0.235 Sum_probs=42.2
Q ss_pred cchhHHHHHHHHhhhhcC---CCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHH
Q 037475 20 SIKTYKIYIFKVLNQIYL---DIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRL 74 (98)
Q Consensus 20 r~esy~~YI~kVLKqVhp---d~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrL 74 (98)
++-.|+..+..+.....+ |+.+.+.|+.-+-- .-.|.+.||-||.++|||-|.|+
T Consensus 13 ~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarri 83 (235)
T 2l5a_A 13 SKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRI 83 (235)
T ss_dssp SCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTS
T ss_pred cCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHH
Confidence 456788888777777655 78888888865533 33456899999999999999885
No 41
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=72.09 E-value=1.2 Score=30.03 Aligned_cols=48 Identities=19% Similarity=0.228 Sum_probs=37.3
Q ss_pred HHHHHhhhhcC--CCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHH
Q 037475 27 YIFKVLNQIYL--DIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRL 74 (98)
Q Consensus 27 YI~kVLKqVhp--d~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrL 74 (98)
.|-|+++.+-. +..+|.+++..|.- ..++++.+|+||+..||..|+|-
T Consensus 24 ~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rr 86 (107)
T 3b0b_B 24 TTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARR 86 (107)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHh
Confidence 36677776643 46788888876544 67888999999999999999874
No 42
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=64.34 E-value=2.3 Score=30.15 Aligned_cols=47 Identities=19% Similarity=0.270 Sum_probs=35.5
Q ss_pred HHHHhhhhc--CCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHH
Q 037475 28 IFKVLNQIY--LDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRL 74 (98)
Q Consensus 28 I~kVLKqVh--pd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrL 74 (98)
|-|+.+++- .++.+|..++..|-- ..+|++.+|.||+..||..++|-
T Consensus 25 VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rr 86 (140)
T 3vh5_A 25 TGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARR 86 (140)
T ss_dssp HHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 445555552 356788888865544 67888999999999999999873
No 43
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=57.30 E-value=20 Score=24.60 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=19.1
Q ss_pred ccccccCCCCCCChHHHHHHHHH
Q 037475 52 SRLARYKKKPTITSREIQTIVRL 74 (98)
Q Consensus 52 ~~La~~~kr~TltsreIqtAvrL 74 (98)
-.++.+.+|+|+|..||--|++.
T Consensus 89 v~yaehA~RKTVta~DV~~Alkr 111 (121)
T 2ly8_A 89 VTYTEHAKRKTVTSLDVVYALKR 111 (121)
T ss_dssp HHHHHHTTCCCBCHHHHHHHHHH
T ss_pred HHHHHhcCCCcCcHHHHHHHHHh
Confidence 55677899999999999888763
No 44
>2v4x_A JSRV capsid, capsid protein P27; virion, zinc-finger, metal-binding, CAPS protein, structural protein, viral nucleoprotein; HET: MSE; 1.5A {Jaagsiekte sheep retrovirus}
Probab=35.71 E-value=20 Score=25.24 Aligned_cols=43 Identities=16% Similarity=0.286 Sum_probs=32.4
Q ss_pred HHhhhhcCCCCchHH-HHHhhhhccccccCCCCCCChHHHHHHHHHhchh
Q 037475 30 KVLNQIYLDIGISSK-AMGIMNTSRLARYKKKPTITSREIQTIVRLVLLG 78 (98)
Q Consensus 30 kVLKqVhpd~gISsk-am~imns~~La~~~kr~TltsreIqtAvrLlLPg 78 (98)
+=||+-....|..+- +|.++++ |+... ||+.|.++-+|.+|+|
T Consensus 20 keLk~Av~~YGp~APyT~a~le~--La~~~----LtP~DW~~lara~Ls~ 63 (140)
T 2v4x_A 20 KELKIACSQYGPTAPFTIAMIEN--LGTQA----LPPNDWKQTARACLSG 63 (140)
T ss_dssp HHHHHHHHHTCTTSHHHHHHHHH--HHTSC----CCHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHhCCCCchHHHHHHH--HHhCC----CChHHHHHHHHHHcCc
Confidence 445555666666544 8888888 66543 9999999999999986
No 45
>3mn5_S Protein spire, actin, alpha skeletal muscle; WH2 domain, actin complex, contractIle protein-protei complex; HET: ATP LAB; 1.50A {Drosophila melanogaster}
Probab=35.48 E-value=7.1 Score=21.98 Aligned_cols=10 Identities=40% Similarity=0.092 Sum_probs=8.2
Q ss_pred HHHhhhhcCC
Q 037475 29 FKVLNQIYLD 38 (98)
Q Consensus 29 ~kVLKqVhpd 38 (98)
-++||||||.
T Consensus 27 g~elkqitpp 36 (38)
T 3mn5_S 27 GKELKQITPP 36 (38)
T ss_pred cccccccCCC
Confidence 3689999985
No 46
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=35.42 E-value=24 Score=26.84 Aligned_cols=24 Identities=17% Similarity=0.182 Sum_probs=21.0
Q ss_pred ccccccCCCCCCChHHHHHHHHHh
Q 037475 52 SRLARYKKKPTITSREIQTIVRLV 75 (98)
Q Consensus 52 ~~La~~~kr~TltsreIqtAvrLl 75 (98)
..++.+.+|+|+|+.||--|++..
T Consensus 203 v~yaeHA~RKTVta~DV~~ALKr~ 226 (235)
T 2l5a_A 203 VTYTEHAKRKTVTSLDVVYALKRQ 226 (235)
T ss_dssp HHHHHHTTCCSCCHHHHHHHHHHH
T ss_pred HHHHHhcCCCcCcHHHHHHHHHhc
Confidence 667889999999999999998754
No 47
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=32.51 E-value=35 Score=30.02 Aligned_cols=47 Identities=17% Similarity=0.202 Sum_probs=33.4
Q ss_pred HHHHHHhhhhcCCCCchHHHHH------------hhhh-ccccccCCCCCCChHHHHHHHH
Q 037475 26 IYIFKVLNQIYLDIGISSKAMG------------IMNT-SRLARYKKKPTITSREIQTIVR 73 (98)
Q Consensus 26 ~YI~kVLKqVhpd~gISskam~------------imns-~~La~~~kr~TltsreIqtAvr 73 (98)
.-|.|.||..+- -.|++.|.- |+.- +.-++.+++..|++|+||.|++
T Consensus 108 ~~~~~~l~~~~~-~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~ 167 (1049)
T 3ksy_A 108 EKIHPLLKEVLG-YKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMC 167 (1049)
T ss_dssp HHHHHHHHHHHC-SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHH
T ss_pred HHHHHHhhcccc-cccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCcccccccc
Confidence 357888865543 366665542 2222 6778889999999999999986
No 48
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=31.40 E-value=25 Score=20.87 Aligned_cols=22 Identities=18% Similarity=-0.143 Sum_probs=14.9
Q ss_pred HHHHHHhhhhcCCCCchHHHHH
Q 037475 26 IYIFKVLNQIYLDIGISSKAMG 47 (98)
Q Consensus 26 ~YI~kVLKqVhpd~gISskam~ 47 (98)
.-..+..++.|||.+=+...+.
T Consensus 34 ~ayr~l~~~~HPDk~g~~~~f~ 55 (71)
T 2guz_A 34 EVHRKIMLANHPDKGGSPFLAT 55 (71)
T ss_dssp HHHHHHHHHHCGGGTCCHHHHH
T ss_pred HHHHHHHHHHCCCCCCCHHHHH
Confidence 3346678899999875555444
No 49
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=26.61 E-value=1e+02 Score=19.63 Aligned_cols=48 Identities=15% Similarity=0.338 Sum_probs=31.9
Q ss_pred HHHHhhhhcCCCCchHHHHHhhhh------ccc--------cccCCCCCCChHHHHHHHHHhc
Q 037475 28 IFKVLNQIYLDIGISSKAMGIMNT------SRL--------ARYKKKPTITSREIQTIVRLVL 76 (98)
Q Consensus 28 I~kVLKqVhpd~gISskam~imns------~~L--------a~~~kr~TltsreIqtAvrLlL 76 (98)
|.|+..++. +.++|.....+|.. +.| .+.+....|.++.|..|+|.+-
T Consensus 22 vKrl~~~~~-~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl~ 83 (89)
T 1bh9_B 22 IKRLIQSIT-GTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLK 83 (89)
T ss_dssp HHHHHHHHH-SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence 666777764 66777666555554 111 1245678999999999998764
No 50
>4afj_X Proto-oncogene FRAT1; transferase-peptide complex, kinase; HET: PTR SJJ; 1.98A {Homo sapiens} PDB: 3zrk_X* 3zrl_X* 3zrm_X*
Probab=25.63 E-value=28 Score=18.71 Aligned_cols=15 Identities=40% Similarity=0.567 Sum_probs=11.6
Q ss_pred HHhchhHHHHHHHhh
Q 037475 73 RLVLLGELAKHVASE 87 (98)
Q Consensus 73 rLlLPgeLaKhAvse 87 (98)
.|+++|-|.|.||..
T Consensus 9 qLl~~G~likeAvrr 23 (30)
T 4afj_X 9 QLVLSGNLIKEAVRR 23 (30)
T ss_dssp HHHHHTCHHHHHHHH
T ss_pred HHHHccchHHHHHHH
Confidence 378899999888753
No 51
>1d6g_A CCK-A-receptor, cholecystokinin type A receptor; alpha-helix, beta-sheet, complex GPCR-ligand, hormone/growth factor complex; NMR {Synthetic} SCOP: g.33.1.1
Probab=24.33 E-value=15 Score=21.66 Aligned_cols=13 Identities=31% Similarity=0.358 Sum_probs=11.5
Q ss_pred ChHHHHHHHHHhc
Q 037475 64 TSREIQTIVRLVL 76 (98)
Q Consensus 64 tsreIqtAvrLlL 76 (98)
.++|.|-|||++|
T Consensus 35 ~~kE~~~aVrIlL 47 (47)
T 1d6g_A 35 PSKEWQPAQVILL 47 (47)
T ss_dssp SCSSHHHHHHSCC
T ss_pred CchhhChhheeeC
Confidence 6799999999886
No 52
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.45 E-value=1.3e+02 Score=18.12 Aligned_cols=49 Identities=20% Similarity=0.099 Sum_probs=27.7
Q ss_pred HHHHHhhhhcCCCCchHHHHHhhhhccccccCCCCCCChHHHHHHHHHhchhHHHHHHHhhhhhh
Q 037475 27 YIFKVLNQIYLDIGISSKAMGIMNTSRLARYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKA 91 (98)
Q Consensus 27 YI~kVLKqVhpd~gISskam~imns~~La~~~kr~TltsreIqtAvrLlLPgeLaKhAvseGtkA 91 (98)
-..+..++.|||..-...+...+ .+|+.|...|.-.+.-..=-..|..+
T Consensus 27 ayr~l~~~~HPDk~~~~~a~~~f----------------~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 75 (88)
T 2ctr_A 27 AFHKLAMKYHPDKNKSPDAEAKF----------------REIAEAYETLSDANRRKEYDTLGHSA 75 (88)
T ss_dssp HHHHHHHHTCTTTCCSHHHHHHH----------------HHHHHHHHHHHSSHHHHHHHHTCHHH
T ss_pred HHHHHHHHHCcCCCCChHHHHHH----------------HHHHHHHHHHCCHHHHHHHHHhCccc
Confidence 34677889999986654444332 25666666665544444333344333
No 53
>3lti_A DNA-directed RNA polymerase subunit beta; BBM2, nucleotidyltransferase, transcription, transferase; HET: MLY MSE; 1.60A {Escherichia coli} PDB: 3e7h_A
Probab=22.30 E-value=1.6e+02 Score=22.77 Aligned_cols=50 Identities=10% Similarity=0.235 Sum_probs=31.6
Q ss_pred HHHHHHHHhhhhcCCCCchHH-HHHhhhh-------------------ccccc--cCCCCCCChHHHHHHHHHhc
Q 037475 24 YKIYIFKVLNQIYLDIGISSK-AMGIMNT-------------------SRLAR--YKKKPTITSREIQTIVRLVL 76 (98)
Q Consensus 24 y~~YI~kVLKqVhpd~gISsk-am~imns-------------------~~La~--~~kr~TltsreIqtAvrLlL 76 (98)
=-..|||+|+ |+-..+.+ |-+.+++ .+|.. -....|||..||-.+++-|+
T Consensus 215 Al~eIYr~lR---pgep~t~e~a~~l~~~lFF~~~RYDLg~VGR~KlNkKL~l~~~~~~~~Lt~eDIl~~ikyLI 286 (296)
T 3lti_A 215 ALVEIYRMMR---PGEPPTREAAESLFENLFFSEDRYDLSAVGRMXFNRSLLREEIEGSGILSXDDIIDVMXXLI 286 (296)
T ss_dssp HHHHHHHHHS---TTSCCCHHHHHHHHHHHHSCTTTCBCHHHHHHHHHHHTTCSCSCCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCC---CCCCCCHHHHHHHHHHhhcCcCeechhhhchhHhhhhhCcCCCCCccEecHHHHHHHHHHHH
Confidence 3456888887 44445544 4445554 12211 12458999999999999876
No 54
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=21.97 E-value=45 Score=20.21 Aligned_cols=21 Identities=19% Similarity=-0.096 Sum_probs=14.0
Q ss_pred HHHHHhhhhcCCCCchHHHHH
Q 037475 27 YIFKVLNQIYLDIGISSKAMG 47 (98)
Q Consensus 27 YI~kVLKqVhpd~gISskam~ 47 (98)
-..+..++.|||.+=+.+.+.
T Consensus 33 aYr~la~~~HPDk~~~~~~f~ 53 (79)
T 1faf_A 33 AYKQQSLLLHPDKGGSHALMQ 53 (79)
T ss_dssp HHHHHHHHSSGGGSCCHHHHH
T ss_pred HHHHHHHHHCcCCCCCHHHHH
Confidence 346678899999865544443
No 55
>2kgf_A Capsid protein P27; retrovirus capsid protein, N-terminal core domain (SCOP), viral protein; NMR {Mason-pfizer monkey virus}
Probab=20.39 E-value=50 Score=23.14 Aligned_cols=44 Identities=27% Similarity=0.400 Sum_probs=32.8
Q ss_pred HHHhhhhcCCCCchHH-HHHhhhhccccccCCCCCCChHHHHHHHHHhchh
Q 037475 29 FKVLNQIYLDIGISSK-AMGIMNTSRLARYKKKPTITSREIQTIVRLVLLG 78 (98)
Q Consensus 29 ~kVLKqVhpd~gISsk-am~imns~~La~~~kr~TltsreIqtAvrLlLPg 78 (98)
-|=||+.....|-++- +|.++++ |+. .-||+.|.++-+|.+|+|
T Consensus 24 iKeLk~Av~~YGp~APyT~~lle~--la~----~~LtP~DW~~lara~Ls~ 68 (140)
T 2kgf_A 24 IKELKTAASQYGATAPYTLAIVES--VAD----NWLTPTDWNTLVRAVLSG 68 (140)
T ss_dssp HHHHHHHHHHTCTTSHHHHHHHHH--HHT----SBCCHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHhCCCCchHHHHHHH--HHh----CCCChHHHHHHHHHHcCc
Confidence 3445566666676544 8888888 653 459999999999999986
Done!