BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037477
         (639 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4HOU|A Chain A, Crystal Structure Of N-terminal Human Ifit1
 pdb|4HOU|B Chain B, Crystal Structure Of N-terminal Human Ifit1
          Length = 273

 Score = 34.7 bits (78), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 98/237 (41%), Gaps = 58/237 (24%)

Query: 378 GIHRALTKL----GRFDEAEKMMKAMKNAGFEP-DN-------ITYSQVIFGLCKAGRFE 425
           GIH  L  +    G+ +EA K +K  +N   E  DN       +T+    +     GR  
Sbjct: 47  GIHNLLAYVKHLKGQNEEALKSLKEAENLXQEEHDNQANVRSLVTWGNFAWXYYHXGRLA 106

Query: 426 DACNVLDEMEENGC------------IPDI---KTWTILIQGHCAANEVDRALLCFAKMM 470
           +A   LD++E N C             P+I   + W +L    C     +RA  CF K++
Sbjct: 107 EAQTYLDKVE-NICKKLSNPFRYRXECPEIDCEEGWALL---KCGGKNYERAKACFEKVL 162

Query: 471 E---KNYDADAD--LLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLI---- 521
           E   +N ++ A   +    ++GF    + +  + LL  + + VRL P     K L+    
Sbjct: 163 EVDPENPESSAGYAISAYRLDGFKLATKNHKPFSLL-PLRQAVRLNPDNGYIKVLLALKL 221

Query: 522 ----EKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYISKF----GTVEDASEFLK 570
               ++  G + +EEA   L     Q Y        +Y +KF    G+V+ A E LK
Sbjct: 222 QDEGQEAEGEKYIEEA---LANXSSQTY------VFRYAAKFYRRKGSVDKALELLK 269


>pdb|3SPA|A Chain A, Crystal Structure Of Human Mitochondrial Rna Polymerase
          Length = 1134

 Score = 30.0 bits (66), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 5/71 (7%)

Query: 371 LSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNV 430
           L+  +Y+ +     + G F E   ++  +K+AG  PD ++Y+  +   C   + +DA  +
Sbjct: 163 LTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL--QCMGRQDQDAGTI 220

Query: 431 ---LDEMEENG 438
              L++M + G
Sbjct: 221 ERCLEQMSQEG 231


>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Mn
 pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Ca
          Length = 501

 Score = 30.0 bits (66), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 395 MMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNV 430
           M+K MK  G +P   +Y   +FG C+ G  + A  V
Sbjct: 127 MVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEV 162


>pdb|3JSB|A Chain A, Crystal Structure Of The N-Terminal Domain Of The
           Lymphocytic Choriomeningitis Virus L Protein
 pdb|3JSB|B Chain B, Crystal Structure Of The N-Terminal Domain Of The
           Lymphocytic Choriomeningitis Virus L Protein
          Length = 204

 Score = 29.6 bits (65), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 6/111 (5%)

Query: 526 GARRLEEAMNLLRLMKKQNYPPFPEPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQ 585
           G + ++ ++ LL    +     F + F++  +K   +    E L    V   P       
Sbjct: 97  GYKLIDNSLILLECFVRSTPASFEKKFIEDTNKLACIR---EDLAVAGVTLVPIVDGRCD 153

Query: 586 VFESFFNEGRHYEAKDLLYKCPHHIRQDSKI---SLLFGSAKSNKVTIPSR 633
              SF  E  +++ +DLL+K   +  QD K+   S  F   +S K TI  R
Sbjct: 154 YDNSFMPEWANFKFRDLLFKLLEYSNQDEKVFEESEYFRLCESLKTTIDKR 204


>pdb|1QE0|A Chain A, Crystal Structure Of Apo S. Aureus Histidyl-Trna
           Synthetase
 pdb|1QE0|B Chain B, Crystal Structure Of Apo S. Aureus Histidyl-Trna
           Synthetase
          Length = 420

 Score = 29.6 bits (65), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 6/88 (6%)

Query: 357 VFRVANKYESLGNSLSKSVYDGIHRALTKLG-RFDEAEKMMKAM---KNAGFE--PDNIT 410
             + A +     N  SK+ Y+ +   L  LG  + E   +++ +    +  FE   DN  
Sbjct: 216 AIKTAPRITDFLNEESKAYYEQVKAYLDDLGIPYTEDPNLVRGLDYYTHTAFELMMDNPN 275

Query: 411 YSQVIFGLCKAGRFEDACNVLDEMEENG 438
           Y   I  LC  GR+     +LD   E G
Sbjct: 276 YDGAITTLCGGGRYNGLLELLDGPSETG 303


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,159,462
Number of Sequences: 62578
Number of extensions: 681152
Number of successful extensions: 1827
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1825
Number of HSP's gapped (non-prelim): 10
length of query: 639
length of database: 14,973,337
effective HSP length: 105
effective length of query: 534
effective length of database: 8,402,647
effective search space: 4487013498
effective search space used: 4487013498
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)