Query 037477
Match_columns 639
No_of_seqs 659 out of 3191
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 12:41:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037477.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037477hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1E-65 2.2E-70 572.3 56.0 500 106-631 134-676 (857)
2 PLN03218 maturation of RBCL 1; 100.0 2.5E-63 5.4E-68 541.7 62.0 492 106-612 383-912 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 8.6E-63 1.9E-67 548.9 55.3 498 97-620 227-732 (857)
4 PLN03081 pentatricopeptide (PP 100.0 2E-62 4.3E-67 533.1 50.0 475 94-618 89-567 (697)
5 PLN03218 maturation of RBCL 1; 100.0 2.7E-60 5.8E-65 517.9 61.8 486 112-610 356-877 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 1.6E-57 3.4E-62 494.8 42.6 430 126-606 84-520 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 9.1E-24 2E-28 241.1 61.5 480 106-606 376-863 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.9E-23 6.3E-28 237.0 64.9 485 106-609 308-799 (899)
9 PRK11447 cellulose synthase su 99.9 7.3E-16 1.6E-20 177.0 61.0 486 105-606 74-697 (1157)
10 PRK11447 cellulose synthase su 99.9 9.4E-16 2E-20 176.1 61.2 489 105-607 159-738 (1157)
11 PRK11788 tetratricopeptide rep 99.9 3.8E-18 8.2E-23 174.4 36.6 309 229-548 34-352 (389)
12 PRK11788 tetratricopeptide rep 99.8 1.7E-17 3.7E-22 169.6 36.8 320 83-515 25-354 (389)
13 TIGR00990 3a0801s09 mitochondr 99.8 1.6E-15 3.6E-20 163.3 42.9 355 243-606 140-568 (615)
14 PRK09782 bacteriophage N4 rece 99.8 2.1E-13 4.5E-18 150.0 58.6 471 106-606 91-703 (987)
15 KOG4422 Uncharacterized conser 99.8 1.5E-14 3.3E-19 135.2 41.8 251 110-439 194-464 (625)
16 KOG4422 Uncharacterized conser 99.8 6.5E-14 1.4E-18 131.1 42.3 431 130-579 117-594 (625)
17 TIGR00990 3a0801s09 mitochondr 99.8 9E-14 1.9E-18 149.9 48.0 415 106-575 140-571 (615)
18 PRK10049 pgaA outer membrane p 99.8 8.1E-14 1.8E-18 153.0 46.9 418 91-619 11-466 (765)
19 PRK15174 Vi polysaccharide exp 99.8 1.5E-14 3.2E-19 155.4 39.9 319 243-577 55-383 (656)
20 PRK15174 Vi polysaccharide exp 99.7 1.2E-13 2.6E-18 148.4 45.3 253 244-543 124-381 (656)
21 PRK09782 bacteriophage N4 rece 99.7 5.1E-12 1.1E-16 139.2 58.3 493 95-615 46-678 (987)
22 KOG4626 O-linked N-acetylgluco 99.7 3.5E-14 7.6E-19 138.7 32.1 407 106-598 95-508 (966)
23 PRK14574 hmsH outer membrane p 99.7 4.6E-12 1E-16 136.6 51.4 440 96-606 37-510 (822)
24 KOG4626 O-linked N-acetylgluco 99.7 5.7E-14 1.2E-18 137.3 32.5 356 243-617 129-494 (966)
25 KOG2002 TPR-containing nuclear 99.7 4E-12 8.7E-17 131.2 43.5 528 82-622 153-724 (1018)
26 PRK10049 pgaA outer membrane p 99.6 3.1E-12 6.8E-17 140.6 41.4 369 128-609 14-422 (765)
27 PRK14574 hmsH outer membrane p 99.6 9.8E-11 2.1E-15 126.5 46.7 327 275-608 111-478 (822)
28 KOG2002 TPR-containing nuclear 99.5 1.9E-09 4.1E-14 111.9 46.7 426 106-543 283-745 (1018)
29 KOG4318 Bicoid mRNA stability 99.5 5.4E-11 1.2E-15 121.5 33.0 459 123-606 19-591 (1088)
30 KOG2076 RNA polymerase III tra 99.5 5.4E-09 1.2E-13 107.9 45.0 352 106-499 152-547 (895)
31 TIGR00540 hemY_coli hemY prote 99.4 4.9E-10 1.1E-14 114.2 33.5 283 277-605 95-395 (409)
32 PRK10747 putative protoheme IX 99.4 7.1E-10 1.5E-14 112.4 34.4 278 279-605 97-386 (398)
33 KOG0547 Translocase of outer m 99.4 3.3E-09 7.2E-14 101.8 34.2 219 383-606 336-563 (606)
34 COG2956 Predicted N-acetylgluc 99.4 5.9E-09 1.3E-13 95.0 33.0 237 229-506 34-277 (389)
35 PF13429 TPR_15: Tetratricopep 99.4 4.6E-12 9.9E-17 122.6 14.4 258 306-606 13-274 (280)
36 COG2956 Predicted N-acetylgluc 99.4 1.9E-09 4.1E-14 98.2 29.8 289 279-606 48-344 (389)
37 KOG1126 DNA-binding cell divis 99.4 1.5E-10 3.2E-15 115.5 24.1 276 281-606 334-617 (638)
38 PF13041 PPR_2: PPR repeat fam 99.4 1.3E-12 2.9E-17 88.4 6.0 50 127-176 1-50 (50)
39 KOG0495 HAT repeat protein [RN 99.4 8.2E-07 1.8E-11 88.7 47.7 467 107-606 390-877 (913)
40 KOG2003 TPR repeat-containing 99.4 8.5E-09 1.8E-13 97.9 32.5 272 311-595 429-709 (840)
41 PRK10747 putative protoheme IX 99.4 1.5E-09 3.3E-14 110.0 30.1 223 379-609 124-357 (398)
42 PF13041 PPR_2: PPR repeat fam 99.3 2.2E-12 4.7E-17 87.3 6.3 50 264-313 1-50 (50)
43 PF13429 TPR_15: Tetratricopep 99.3 8.6E-12 1.9E-16 120.7 12.7 257 271-573 13-275 (280)
44 KOG2076 RNA polymerase III tra 99.3 9.8E-09 2.1E-13 106.0 34.9 323 242-607 151-510 (895)
45 COG3071 HemY Uncharacterized e 99.3 9.4E-09 2E-13 96.7 31.4 281 279-605 97-386 (400)
46 KOG0495 HAT repeat protein [RN 99.3 1.3E-06 2.8E-11 87.4 46.9 449 106-608 359-815 (913)
47 KOG1155 Anaphase-promoting com 99.3 7.3E-09 1.6E-13 98.9 30.0 260 272-542 233-494 (559)
48 KOG1155 Anaphase-promoting com 99.3 1.1E-07 2.5E-12 91.0 37.6 196 409-609 331-536 (559)
49 COG3071 HemY Uncharacterized e 99.3 1.7E-07 3.8E-12 88.4 38.2 259 244-543 132-390 (400)
50 KOG1126 DNA-binding cell divis 99.3 2.2E-09 4.7E-14 107.3 25.8 201 265-507 420-620 (638)
51 TIGR00540 hemY_coli hemY prote 99.3 3.4E-08 7.4E-13 100.8 35.3 290 241-572 95-396 (409)
52 KOG1915 Cell cycle control pro 99.2 4.3E-06 9.4E-11 80.6 41.6 360 244-618 155-546 (677)
53 KOG2003 TPR repeat-containing 99.2 4.2E-07 9.1E-12 86.6 34.3 428 106-571 250-718 (840)
54 KOG4318 Bicoid mRNA stability 99.2 1.8E-09 3.9E-14 110.7 19.8 250 258-529 17-286 (1088)
55 TIGR02521 type_IV_pilW type IV 99.2 1.2E-08 2.6E-13 96.0 24.5 192 411-606 34-229 (234)
56 KOG1915 Cell cycle control pro 99.2 6.4E-06 1.4E-10 79.5 44.9 463 106-613 120-629 (677)
57 PRK12370 invasion protein regu 99.1 3.8E-08 8.3E-13 104.4 28.9 215 246-507 277-502 (553)
58 TIGR02521 type_IV_pilW type IV 99.1 4.6E-08 1E-12 92.0 26.4 198 266-504 31-229 (234)
59 KOG2047 mRNA splicing factor [ 99.1 1.6E-05 3.5E-10 79.7 42.1 432 106-575 115-615 (835)
60 KOG1840 Kinesin light chain [C 99.1 6.1E-08 1.3E-12 98.1 25.9 234 373-606 199-476 (508)
61 KOG1173 Anaphase-promoting com 99.1 2.1E-06 4.6E-11 84.6 34.2 242 376-626 281-535 (611)
62 PF12569 NARP1: NMDA receptor- 99.0 2.2E-06 4.7E-11 88.1 34.7 286 243-542 17-333 (517)
63 KOG3785 Uncharacterized conser 99.0 1.7E-05 3.8E-10 73.6 37.7 443 107-583 36-497 (557)
64 PRK12370 invasion protein regu 99.0 4.1E-07 8.8E-12 96.6 30.7 216 385-608 316-534 (553)
65 KOG1129 TPR repeat-containing 99.0 3.2E-08 6.8E-13 90.4 18.6 226 375-607 225-456 (478)
66 KOG1840 Kinesin light chain [C 99.0 3.3E-07 7.2E-12 92.8 27.1 247 265-541 198-477 (508)
67 PRK11189 lipoprotein NlpI; Pro 99.0 2.5E-07 5.3E-12 89.8 25.2 216 386-608 39-264 (296)
68 PF12569 NARP1: NMDA receptor- 99.0 1.4E-06 2.9E-11 89.6 31.2 289 274-574 12-333 (517)
69 KOG2376 Signal recognition par 99.0 4.4E-05 9.6E-10 76.0 39.2 160 444-607 340-518 (652)
70 KOG1129 TPR repeat-containing 99.0 1.4E-07 3.1E-12 86.2 19.6 234 265-542 222-457 (478)
71 KOG1156 N-terminal acetyltrans 98.9 9.8E-05 2.1E-09 74.5 41.2 418 80-545 28-470 (700)
72 COG3063 PilF Tfp pilus assembl 98.9 2E-06 4.3E-11 75.4 23.1 189 412-602 39-229 (250)
73 KOG1174 Anaphase-promoting com 98.9 0.0001 2.3E-09 70.2 40.3 290 245-582 211-507 (564)
74 KOG4162 Predicted calmodulin-b 98.8 0.00023 5E-09 73.3 39.2 447 141-606 239-780 (799)
75 KOG2047 mRNA splicing factor [ 98.8 0.00024 5.3E-09 71.5 48.6 505 81-604 124-718 (835)
76 COG3063 PilF Tfp pilus assembl 98.8 6.2E-06 1.3E-10 72.4 23.2 201 376-581 38-242 (250)
77 KOG1156 N-terminal acetyltrans 98.8 0.00031 6.8E-09 71.0 37.7 361 235-610 80-469 (700)
78 PF12854 PPR_1: PPR repeat 98.7 1.1E-08 2.4E-13 61.8 3.7 32 261-292 2-33 (34)
79 PRK11189 lipoprotein NlpI; Pro 98.7 1.2E-05 2.5E-10 78.2 26.8 216 245-506 41-264 (296)
80 KOG0547 Translocase of outer m 98.7 6.7E-06 1.5E-10 79.7 24.0 335 243-606 128-488 (606)
81 cd05804 StaR_like StaR_like; a 98.7 4.4E-05 9.5E-10 77.0 31.5 302 266-606 6-333 (355)
82 PF12854 PPR_1: PPR repeat 98.7 2.6E-08 5.6E-13 60.2 4.5 34 295-328 1-34 (34)
83 KOG4340 Uncharacterized conser 98.7 1.4E-05 3.1E-10 72.4 23.3 314 269-608 13-338 (459)
84 KOG3617 WD40 and TPR repeat-co 98.7 0.00051 1.1E-08 71.1 36.1 391 106-605 741-1170(1416)
85 KOG3616 Selective LIM binding 98.7 2.5E-05 5.4E-10 79.3 26.6 67 108-185 511-578 (1636)
86 cd05804 StaR_like StaR_like; a 98.7 0.00023 5.1E-09 71.7 34.7 296 238-575 14-336 (355)
87 KOG1174 Anaphase-promoting com 98.7 0.00016 3.4E-09 69.0 30.0 298 263-606 191-497 (564)
88 KOG3785 Uncharacterized conser 98.6 0.0002 4.4E-09 66.8 28.3 441 136-606 29-487 (557)
89 KOG1173 Anaphase-promoting com 98.6 0.00015 3.3E-09 72.0 28.3 281 298-587 241-530 (611)
90 KOG0985 Vesicle coat protein c 98.5 0.0022 4.8E-08 68.2 41.3 312 244-604 998-1339(1666)
91 PF04733 Coatomer_E: Coatomer 98.5 1.1E-06 2.3E-11 84.1 12.9 148 417-576 111-266 (290)
92 KOG3617 WD40 and TPR repeat-co 98.5 0.00029 6.4E-09 72.8 29.2 158 127-327 724-884 (1416)
93 KOG1070 rRNA processing protei 98.5 2.1E-05 4.5E-10 85.6 22.1 211 391-607 1443-1661(1710)
94 PF04733 Coatomer_E: Coatomer 98.5 2.3E-05 5E-10 75.0 20.4 226 266-507 35-265 (290)
95 PRK04841 transcriptional regul 98.5 0.00028 6E-09 80.9 33.2 331 276-606 384-757 (903)
96 KOG1914 mRNA cleavage and poly 98.5 0.0019 4E-08 64.2 38.9 171 424-598 347-528 (656)
97 KOG4162 Predicted calmodulin-b 98.5 0.0031 6.6E-08 65.4 35.2 198 106-329 336-541 (799)
98 KOG1128 Uncharacterized conser 98.4 8.5E-05 1.8E-09 76.0 23.6 202 376-591 427-634 (777)
99 KOG3616 Selective LIM binding 98.4 0.00073 1.6E-08 69.1 29.6 287 271-605 620-933 (1636)
100 KOG1070 rRNA processing protei 98.4 0.00032 7E-09 76.8 27.0 226 284-549 1443-1669(1710)
101 KOG1914 mRNA cleavage and poly 98.4 0.0034 7.4E-08 62.4 31.5 145 459-606 347-498 (656)
102 KOG4340 Uncharacterized conser 98.3 0.00032 7E-09 63.9 22.2 263 265-539 43-335 (459)
103 TIGR03302 OM_YfiO outer membra 98.3 0.0001 2.2E-09 69.4 20.3 167 372-541 32-230 (235)
104 PRK04841 transcriptional regul 98.3 0.0036 7.9E-08 71.8 36.4 270 241-543 463-760 (903)
105 TIGR03302 OM_YfiO outer membra 98.3 0.00011 2.4E-09 69.0 20.1 186 405-608 30-231 (235)
106 KOG1128 Uncharacterized conser 98.2 0.0012 2.6E-08 67.9 26.4 74 243-328 411-484 (777)
107 KOG1125 TPR repeat-containing 98.2 9.6E-05 2.1E-09 73.6 17.6 218 382-605 294-523 (579)
108 TIGR00756 PPR pentatricopeptid 98.2 2.3E-06 4.9E-11 52.7 3.9 35 130-164 1-35 (35)
109 PRK14720 transcript cleavage f 98.2 0.0014 3.1E-08 71.2 26.7 172 261-472 25-198 (906)
110 KOG2376 Signal recognition par 98.2 0.011 2.5E-07 59.5 36.5 129 479-608 340-486 (652)
111 KOG3081 Vesicle coat complex C 98.1 0.0054 1.2E-07 55.5 25.4 129 416-556 116-248 (299)
112 PF13812 PPR_3: Pentatricopept 98.1 3.4E-06 7.3E-11 51.5 4.0 34 129-162 1-34 (34)
113 COG4783 Putative Zn-dependent 98.1 0.011 2.4E-07 58.4 29.3 154 417-590 315-472 (484)
114 PLN02789 farnesyltranstransfer 98.1 0.0046 9.9E-08 60.2 26.8 214 269-526 40-267 (320)
115 TIGR00756 PPR pentatricopeptid 98.1 4.1E-06 8.8E-11 51.6 3.8 33 268-300 2-34 (35)
116 KOG0985 Vesicle coat protein c 98.1 0.026 5.7E-07 60.5 41.6 482 71-608 928-1443(1666)
117 KOG2053 Mitochondrial inherita 98.1 0.026 5.5E-07 59.9 44.3 84 248-331 172-256 (932)
118 PF13812 PPR_3: Pentatricopept 98.1 5.8E-06 1.3E-10 50.4 3.9 33 267-299 2-34 (34)
119 PRK10370 formate-dependent nit 98.1 0.00027 5.8E-09 63.8 16.3 117 422-542 53-172 (198)
120 PLN02789 farnesyltranstransfer 98.1 0.0074 1.6E-07 58.8 27.2 224 376-606 40-299 (320)
121 KOG3081 Vesicle coat complex C 98.0 0.0052 1.1E-07 55.6 23.0 258 264-542 8-270 (299)
122 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00029 6.3E-09 69.8 17.0 136 479-621 170-309 (395)
123 COG4783 Putative Zn-dependent 98.0 0.019 4.1E-07 56.8 29.3 140 381-543 314-454 (484)
124 PRK10370 formate-dependent nit 98.0 0.00075 1.6E-08 60.9 18.2 112 491-606 52-170 (198)
125 KOG0548 Molecular co-chaperone 98.0 0.016 3.5E-07 57.9 28.1 84 243-330 15-99 (539)
126 KOG0624 dsRNA-activated protei 98.0 0.016 3.4E-07 54.5 33.6 313 243-609 51-370 (504)
127 KOG0548 Molecular co-chaperone 98.0 0.026 5.6E-07 56.4 32.6 240 270-559 228-469 (539)
128 PRK14720 transcript cleavage f 97.9 0.0061 1.3E-07 66.5 26.4 148 127-329 29-177 (906)
129 PRK15179 Vi polysaccharide bio 97.9 0.0043 9.4E-08 66.8 25.1 132 372-507 85-217 (694)
130 PRK15359 type III secretion sy 97.9 0.0011 2.4E-08 56.4 16.8 95 411-507 27-121 (144)
131 COG5010 TadD Flp pilus assembl 97.9 0.0034 7.4E-08 56.8 19.7 156 379-539 72-227 (257)
132 PRK15179 Vi polysaccharide bio 97.9 0.0021 4.6E-08 69.1 21.9 212 372-606 27-242 (694)
133 PRK15359 type III secretion sy 97.9 0.00073 1.6E-08 57.6 15.1 96 376-473 27-122 (144)
134 COG5010 TadD Flp pilus assembl 97.9 0.0042 9.2E-08 56.2 20.0 157 412-572 70-228 (257)
135 KOG1127 TPR repeat-containing 97.9 0.063 1.4E-06 57.8 31.8 474 106-607 575-1102(1238)
136 PF01535 PPR: PPR repeat; Int 97.9 1.7E-05 3.7E-10 47.1 3.3 31 130-160 1-31 (31)
137 TIGR02552 LcrH_SycD type III s 97.8 0.0011 2.4E-08 55.9 15.4 95 411-507 20-114 (135)
138 PF10037 MRP-S27: Mitochondria 97.8 0.00033 7.1E-09 69.7 13.6 120 372-491 65-186 (429)
139 KOG2053 Mitochondrial inherita 97.8 0.066 1.4E-06 57.0 40.1 172 265-439 76-257 (932)
140 KOG1125 TPR repeat-containing 97.8 0.013 2.8E-07 59.1 24.3 257 243-535 298-563 (579)
141 PF10037 MRP-S27: Mitochondria 97.8 0.00028 6.1E-09 70.2 12.9 124 403-527 61-186 (429)
142 PF01535 PPR: PPR repeat; Int 97.8 2.1E-05 4.5E-10 46.7 3.1 29 268-296 2-30 (31)
143 KOG3060 Uncharacterized conser 97.8 0.0025 5.4E-08 57.2 16.8 183 420-607 24-218 (289)
144 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00083 1.8E-08 66.6 15.6 126 374-505 170-295 (395)
145 PF09976 TPR_21: Tetratricopep 97.8 0.0016 3.6E-08 55.6 15.1 124 480-605 14-143 (145)
146 PF08579 RPM2: Mitochondrial r 97.7 0.00077 1.7E-08 52.4 11.3 77 413-489 30-115 (120)
147 TIGR02552 LcrH_SycD type III s 97.7 0.0018 3.9E-08 54.7 14.5 118 430-553 5-122 (135)
148 KOG3060 Uncharacterized conser 97.7 0.023 5.1E-07 51.2 21.3 184 387-577 26-222 (289)
149 PF08579 RPM2: Mitochondrial r 97.6 0.0012 2.6E-08 51.3 11.0 81 445-526 27-116 (120)
150 PF09976 TPR_21: Tetratricopep 97.6 0.0038 8.2E-08 53.3 15.5 123 376-502 15-142 (145)
151 PF06239 ECSIT: Evolutionarily 97.6 0.0018 3.8E-08 57.1 13.2 72 422-493 66-153 (228)
152 KOG1538 Uncharacterized conser 97.6 0.0092 2E-07 60.6 19.4 258 262-569 552-827 (1081)
153 PF05843 Suf: Suppressor of fo 97.5 0.0023 5E-08 61.4 13.4 132 409-542 2-135 (280)
154 KOG1127 TPR repeat-containing 97.5 0.25 5.4E-06 53.5 34.6 347 244-605 576-992 (1238)
155 PF06239 ECSIT: Evolutionarily 97.4 0.003 6.4E-08 55.7 12.0 88 441-529 45-153 (228)
156 PF14559 TPR_19: Tetratricopep 97.4 0.00043 9.3E-09 50.2 6.0 64 558-621 3-66 (68)
157 cd00189 TPR Tetratricopeptide 97.4 0.0037 8E-08 48.4 11.5 90 379-470 6-95 (100)
158 PF14938 SNAP: Soluble NSF att 97.3 0.061 1.3E-06 51.9 20.8 213 376-622 38-276 (282)
159 TIGR02795 tol_pal_ybgF tol-pal 97.3 0.013 2.9E-07 47.8 14.1 93 378-472 7-105 (119)
160 cd00189 TPR Tetratricopeptide 97.2 0.0057 1.2E-07 47.3 11.1 92 412-505 4-95 (100)
161 PF05843 Suf: Suppressor of fo 97.2 0.0039 8.5E-08 59.8 11.4 131 444-578 2-139 (280)
162 TIGR02795 tol_pal_ybgF tol-pal 97.1 0.02 4.2E-07 46.8 13.7 22 414-435 8-29 (119)
163 PRK10866 outer membrane biogen 97.1 0.2 4.2E-06 46.9 21.6 58 272-330 38-98 (243)
164 KOG0624 dsRNA-activated protei 97.1 0.27 6E-06 46.5 26.9 308 106-473 51-371 (504)
165 PRK15363 pathogenicity island 97.0 0.05 1.1E-06 45.9 15.0 88 382-471 44-131 (157)
166 PF12895 Apc3: Anaphase-promot 97.0 0.0016 3.4E-08 49.6 5.6 20 484-503 31-50 (84)
167 PF04840 Vps16_C: Vps16, C-ter 97.0 0.37 8.1E-06 46.9 22.7 108 481-605 180-287 (319)
168 COG4700 Uncharacterized protei 97.0 0.15 3.2E-06 43.9 16.9 141 440-584 86-231 (251)
169 PLN03088 SGT1, suppressor of 97.0 0.022 4.7E-07 56.9 14.6 91 380-472 9-99 (356)
170 PRK02603 photosystem I assembl 96.9 0.058 1.3E-06 47.6 15.8 82 411-493 38-121 (172)
171 PF14938 SNAP: Soluble NSF att 96.9 0.1 2.2E-06 50.3 18.7 21 273-293 42-62 (282)
172 PRK10866 outer membrane biogen 96.9 0.13 2.9E-06 48.0 18.7 176 414-606 38-238 (243)
173 PF12895 Apc3: Anaphase-promot 96.9 0.0032 6.9E-08 47.9 6.6 81 421-503 2-83 (84)
174 PRK02603 photosystem I assembl 96.9 0.058 1.3E-06 47.6 15.6 91 373-464 35-127 (172)
175 PF12921 ATP13: Mitochondrial 96.9 0.015 3.3E-07 47.6 10.7 53 473-525 47-99 (126)
176 PRK15363 pathogenicity island 96.9 0.092 2E-06 44.4 15.1 98 413-512 40-137 (157)
177 PF13432 TPR_16: Tetratricopep 96.9 0.0029 6.3E-08 45.3 5.5 54 554-607 5-58 (65)
178 PLN03088 SGT1, suppressor of 96.8 0.036 7.8E-07 55.3 15.0 84 420-505 14-97 (356)
179 PRK10153 DNA-binding transcrip 96.8 0.1 2.2E-06 54.6 18.7 141 404-551 333-488 (517)
180 KOG0553 TPR repeat-containing 96.8 0.0098 2.1E-07 55.1 9.3 88 488-580 91-183 (304)
181 CHL00033 ycf3 photosystem I as 96.7 0.057 1.2E-06 47.4 13.5 94 408-502 35-137 (168)
182 PF14559 TPR_19: Tetratricopep 96.7 0.0083 1.8E-07 43.3 6.8 63 277-342 2-64 (68)
183 KOG2796 Uncharacterized conser 96.7 0.22 4.7E-06 45.4 16.6 147 266-447 177-323 (366)
184 CHL00033 ycf3 photosystem I as 96.7 0.057 1.2E-06 47.5 13.4 96 373-469 35-139 (168)
185 COG4235 Cytochrome c biogenesi 96.6 0.029 6.4E-07 52.3 11.4 108 513-620 155-268 (287)
186 PF12688 TPR_5: Tetratrico pep 96.6 0.041 9E-07 44.6 11.0 101 485-591 8-117 (120)
187 PF12688 TPR_5: Tetratrico pep 96.5 0.23 4.9E-06 40.4 14.7 87 416-504 9-101 (120)
188 PRK10153 DNA-binding transcrip 96.5 0.23 4.9E-06 52.1 18.6 144 367-517 331-489 (517)
189 PF07079 DUF1347: Protein of u 96.5 1.1 2.3E-05 44.5 42.9 337 265-609 127-524 (549)
190 PF12921 ATP13: Mitochondrial 96.4 0.073 1.6E-06 43.7 11.4 85 265-349 1-101 (126)
191 KOG0553 TPR repeat-containing 96.3 0.056 1.2E-06 50.2 11.1 98 417-519 90-187 (304)
192 PF04840 Vps16_C: Vps16, C-ter 96.3 1.2 2.7E-05 43.3 26.3 83 370-468 205-287 (319)
193 PF13432 TPR_16: Tetratricopep 96.2 0.029 6.4E-07 39.9 7.3 25 445-469 33-57 (65)
194 KOG1538 Uncharacterized conser 96.2 0.12 2.6E-06 52.9 13.5 265 298-609 553-846 (1081)
195 PF03704 BTAD: Bacterial trans 96.1 0.15 3.2E-06 43.5 12.7 69 446-515 65-137 (146)
196 COG4105 ComL DNA uptake lipopr 96.1 0.79 1.7E-05 42.1 17.3 66 552-617 173-241 (254)
197 PRK10803 tol-pal system protei 96.0 0.19 4.2E-06 47.4 13.7 98 410-507 145-246 (263)
198 PF13371 TPR_9: Tetratricopept 96.0 0.022 4.7E-07 41.8 6.0 64 555-618 4-67 (73)
199 COG5107 RNA14 Pre-mRNA 3'-end 96.0 1.9 4E-05 42.8 33.2 127 478-607 397-529 (660)
200 PF13414 TPR_11: TPR repeat; P 95.9 0.045 9.7E-07 39.5 7.3 58 445-503 5-63 (69)
201 PF13414 TPR_11: TPR repeat; P 95.9 0.052 1.1E-06 39.2 7.5 63 408-471 3-66 (69)
202 PF13525 YfiO: Outer membrane 95.8 1.4 3E-05 40.0 19.2 86 445-534 112-198 (203)
203 PF13525 YfiO: Outer membrane 95.8 0.53 1.2E-05 42.7 15.5 48 553-600 148-198 (203)
204 PRK10803 tol-pal system protei 95.8 0.26 5.7E-06 46.5 13.7 95 376-472 146-246 (263)
205 PF13281 DUF4071: Domain of un 95.7 2.5 5.4E-05 41.8 20.3 80 375-454 143-228 (374)
206 KOG3941 Intermediate in Toll s 95.6 0.23 4.9E-06 45.7 11.7 51 127-177 65-120 (406)
207 KOG3941 Intermediate in Toll s 95.4 0.38 8.2E-06 44.3 12.4 102 405-506 64-187 (406)
208 smart00299 CLH Clathrin heavy 95.4 1 2.2E-05 38.1 14.8 127 447-592 11-137 (140)
209 PF03704 BTAD: Bacterial trans 95.4 0.13 2.8E-06 43.9 9.4 69 411-480 65-138 (146)
210 KOG2280 Vacuolar assembly/sort 95.4 4.6 0.0001 42.9 25.7 112 407-538 683-794 (829)
211 PF13424 TPR_12: Tetratricopep 95.2 0.097 2.1E-06 38.9 7.1 62 480-541 7-73 (78)
212 PF09205 DUF1955: Domain of un 95.2 1.4 2.9E-05 35.8 13.7 62 412-474 90-151 (161)
213 COG4235 Cytochrome c biogenesi 95.2 1.2 2.7E-05 41.8 15.3 99 406-506 154-255 (287)
214 COG4700 Uncharacterized protei 95.1 2 4.3E-05 37.2 19.3 126 405-535 86-214 (251)
215 PF13371 TPR_9: Tetratricopept 95.1 0.14 2.9E-06 37.4 7.4 15 421-435 8-22 (73)
216 KOG2041 WD40 repeat protein [G 95.0 5.7 0.00012 41.8 23.4 46 559-604 1034-1081(1189)
217 PF10300 DUF3808: Protein of u 94.9 1.8 4E-05 45.0 17.6 169 304-506 191-375 (468)
218 PF13281 DUF4071: Domain of un 94.9 4.5 9.7E-05 40.1 20.4 167 412-581 145-340 (374)
219 PF07035 Mic1: Colon cancer-as 94.8 2 4.4E-05 37.0 14.5 31 289-319 17-47 (167)
220 PF13424 TPR_12: Tetratricopep 94.8 0.1 2.3E-06 38.7 6.2 60 445-504 7-72 (78)
221 PF10300 DUF3808: Protein of u 94.8 1.5 3.3E-05 45.5 16.6 159 446-609 191-376 (468)
222 KOG2796 Uncharacterized conser 94.8 3.3 7.2E-05 38.1 23.3 130 412-543 181-315 (366)
223 KOG2280 Vacuolar assembly/sort 94.7 7.2 0.00016 41.5 31.4 293 294-605 425-795 (829)
224 PF13431 TPR_17: Tetratricopep 94.4 0.045 9.8E-07 32.9 2.6 33 569-601 2-34 (34)
225 COG3118 Thioredoxin domain-con 94.3 4.8 0.0001 37.9 17.1 144 382-528 143-286 (304)
226 PRK15331 chaperone protein Sic 94.3 0.41 8.8E-06 40.8 9.0 87 383-471 47-133 (165)
227 PF08631 SPO22: Meiosis protei 94.1 5.7 0.00012 38.2 24.4 172 277-479 4-193 (278)
228 PF13170 DUF4003: Protein of u 94.1 6 0.00013 38.2 19.1 49 282-330 78-132 (297)
229 KOG2114 Vacuolar assembly/sort 94.0 11 0.00023 40.9 22.8 44 577-621 879-922 (933)
230 COG3898 Uncharacterized membra 93.9 6.9 0.00015 38.3 27.7 58 559-617 342-400 (531)
231 KOG1920 IkappaB kinase complex 93.9 14 0.0003 41.8 23.7 78 485-571 972-1051(1265)
232 KOG2114 Vacuolar assembly/sort 93.8 3.3 7.1E-05 44.5 16.1 177 376-573 337-517 (933)
233 PF04053 Coatomer_WDAD: Coatom 93.7 2.1 4.5E-05 43.9 14.6 155 276-503 271-427 (443)
234 PF08631 SPO22: Meiosis protei 93.7 7 0.00015 37.6 25.1 218 384-605 4-271 (278)
235 KOG0550 Molecular chaperone (D 93.4 8.7 0.00019 37.9 18.5 155 381-543 177-350 (486)
236 COG1729 Uncharacterized protei 93.3 1.3 2.9E-05 41.0 11.2 96 411-507 145-244 (262)
237 PF09205 DUF1955: Domain of un 93.2 4 8.6E-05 33.3 14.4 67 265-332 85-151 (161)
238 PRK15331 chaperone protein Sic 93.1 1.3 2.9E-05 37.8 10.1 86 487-575 46-134 (165)
239 PRK09687 putative lyase; Provi 93.1 8.5 0.00019 36.9 28.9 239 263-524 34-277 (280)
240 PF13929 mRNA_stabil: mRNA sta 93.1 7.9 0.00017 36.5 16.3 116 313-428 140-258 (292)
241 PF07035 Mic1: Colon cancer-as 93.0 4 8.6E-05 35.3 12.9 105 463-575 14-118 (167)
242 COG1729 Uncharacterized protei 93.0 1.5 3.3E-05 40.7 11.0 102 480-582 144-251 (262)
243 KOG1941 Acetylcholine receptor 92.9 4.9 0.00011 38.8 14.3 179 445-623 85-293 (518)
244 smart00299 CLH Clathrin heavy 92.9 5.1 0.00011 33.7 14.3 44 270-314 11-54 (140)
245 KOG0543 FKBP-type peptidyl-pro 92.8 2.4 5.1E-05 41.7 12.6 91 516-606 259-352 (397)
246 PF13170 DUF4003: Protein of u 92.8 9.6 0.00021 36.8 17.2 153 129-310 60-226 (297)
247 PLN03098 LPA1 LOW PSII ACCUMUL 92.8 9.4 0.0002 38.6 17.0 64 372-437 74-141 (453)
248 COG5107 RNA14 Pre-mRNA 3'-end 92.7 12 0.00026 37.5 28.8 128 410-542 399-530 (660)
249 PLN03098 LPA1 LOW PSII ACCUMUL 92.5 1.9 4.1E-05 43.3 11.7 66 405-472 72-141 (453)
250 PF13512 TPR_18: Tetratricopep 92.2 6.1 0.00013 33.0 12.9 59 454-512 21-81 (142)
251 KOG2041 WD40 repeat protein [G 92.1 18 0.0004 38.3 31.0 29 127-155 690-718 (1189)
252 PF13428 TPR_14: Tetratricopep 92.0 0.26 5.5E-06 31.7 3.6 35 582-616 3-37 (44)
253 KOG0550 Molecular chaperone (D 91.8 8.7 0.00019 37.9 14.7 80 525-606 260-347 (486)
254 COG3629 DnrI DNA-binding trans 91.7 1.9 4.1E-05 40.7 10.3 77 375-452 155-236 (280)
255 COG1747 Uncharacterized N-term 91.7 17 0.00037 37.1 17.9 179 127-313 64-251 (711)
256 KOG0543 FKBP-type peptidyl-pro 91.7 10 0.00022 37.5 15.3 137 309-471 216-354 (397)
257 KOG1130 Predicted G-alpha GTPa 91.5 3.4 7.3E-05 40.5 11.7 133 410-542 197-343 (639)
258 COG0457 NrfG FOG: TPR repeat [ 91.4 11 0.00024 34.3 28.5 218 387-606 37-262 (291)
259 KOG4555 TPR repeat-containing 91.4 6.8 0.00015 31.9 12.1 87 418-506 53-143 (175)
260 PF04184 ST7: ST7 protein; In 91.4 12 0.00025 38.2 15.6 57 484-540 265-321 (539)
261 PF04053 Coatomer_WDAD: Coatom 91.2 3.2 6.9E-05 42.6 12.3 22 268-289 297-318 (443)
262 KOG1130 Predicted G-alpha GTPa 90.7 14 0.00031 36.4 15.0 132 375-506 197-343 (639)
263 COG3629 DnrI DNA-binding trans 90.7 3.4 7.5E-05 39.0 10.9 78 409-487 154-236 (280)
264 PF04097 Nic96: Nup93/Nic96; 90.5 15 0.00034 39.7 17.3 224 266-506 112-355 (613)
265 KOG4570 Uncharacterized conser 90.3 3.6 7.8E-05 38.9 10.3 47 459-505 116-162 (418)
266 PF04184 ST7: ST7 protein; In 90.1 8.1 0.00018 39.3 13.3 78 443-522 259-339 (539)
267 KOG4570 Uncharacterized conser 90.0 2.3 4.9E-05 40.1 8.9 103 367-473 58-165 (418)
268 PF09613 HrpB1_HrpK: Bacterial 90.0 2.1 4.6E-05 36.4 8.0 91 514-606 7-107 (160)
269 PF13176 TPR_7: Tetratricopept 89.8 0.57 1.2E-05 28.5 3.5 24 582-605 1-24 (36)
270 COG4649 Uncharacterized protei 89.8 12 0.00027 32.2 13.4 63 444-507 60-123 (221)
271 PF13428 TPR_14: Tetratricopep 89.7 1.4 3E-05 28.2 5.4 23 414-436 7-29 (44)
272 PF13512 TPR_18: Tetratricopep 89.2 12 0.00026 31.3 12.1 55 384-438 21-77 (142)
273 KOG1585 Protein required for f 89.1 18 0.00039 33.1 14.8 118 202-330 93-219 (308)
274 COG4105 ComL DNA uptake lipopr 89.0 19 0.00041 33.4 21.4 167 374-541 36-231 (254)
275 PF04097 Nic96: Nup93/Nic96; 88.8 39 0.00085 36.7 22.9 86 128-215 111-201 (613)
276 PF09613 HrpB1_HrpK: Bacterial 88.8 12 0.00025 32.0 11.6 16 489-504 55-70 (160)
277 KOG2610 Uncharacterized conser 88.6 24 0.00052 34.0 17.4 153 385-541 115-274 (491)
278 COG3898 Uncharacterized membra 88.0 29 0.00063 34.2 31.1 308 243-575 66-392 (531)
279 KOG1920 IkappaB kinase complex 87.9 55 0.0012 37.4 25.0 24 579-602 1183-1206(1265)
280 KOG1464 COP9 signalosome, subu 87.9 23 0.00049 32.9 18.6 32 582-614 306-337 (440)
281 PF07079 DUF1347: Protein of u 87.8 33 0.00071 34.6 30.6 381 93-485 79-532 (549)
282 KOG4555 TPR repeat-containing 87.7 14 0.0003 30.2 10.6 91 381-473 51-145 (175)
283 COG3947 Response regulator con 87.6 25 0.00055 33.1 14.2 51 557-607 290-340 (361)
284 PRK11906 transcriptional regul 87.6 35 0.00076 34.7 16.5 113 387-503 318-432 (458)
285 PF10602 RPN7: 26S proteasome 87.3 13 0.00028 32.8 11.7 95 410-506 38-141 (177)
286 PF10602 RPN7: 26S proteasome 87.3 8.5 0.00018 33.9 10.5 63 267-329 37-101 (177)
287 PRK11906 transcriptional regul 86.9 38 0.00083 34.5 17.1 147 389-538 274-431 (458)
288 PF02284 COX5A: Cytochrome c o 86.8 6.1 0.00013 30.5 7.8 60 461-522 28-87 (108)
289 PF13176 TPR_7: Tetratricopept 86.4 1.9 4.1E-05 26.1 4.2 23 446-468 2-24 (36)
290 TIGR02561 HrpB1_HrpK type III 86.3 1.6 3.5E-05 36.4 4.9 80 526-605 22-106 (153)
291 COG1747 Uncharacterized N-term 86.2 43 0.00094 34.3 21.8 164 372-542 65-233 (711)
292 cd00923 Cyt_c_Oxidase_Va Cytoc 85.9 7.2 0.00016 29.8 7.7 61 459-521 23-83 (103)
293 KOG1258 mRNA processing protei 85.1 53 0.0011 34.4 29.3 332 265-606 44-429 (577)
294 COG4649 Uncharacterized protei 85.0 25 0.00053 30.4 14.9 71 265-336 58-129 (221)
295 KOG2610 Uncharacterized conser 84.9 16 0.00034 35.1 11.2 149 454-605 114-272 (491)
296 PF00637 Clathrin: Region in C 84.9 0.19 4.2E-06 42.7 -1.0 54 272-325 13-66 (143)
297 PF02259 FAT: FAT domain; Int 84.6 45 0.00097 33.2 16.6 61 514-574 146-212 (352)
298 COG3118 Thioredoxin domain-con 84.2 39 0.00084 32.1 17.8 122 416-542 142-264 (304)
299 cd00923 Cyt_c_Oxidase_Va Cytoc 84.1 15 0.00033 28.1 8.7 48 353-400 22-69 (103)
300 KOG0991 Replication factor C, 83.8 35 0.00075 31.2 13.5 142 414-565 136-288 (333)
301 COG4785 NlpI Lipoprotein NlpI, 83.5 34 0.00073 30.9 14.7 154 443-605 99-262 (297)
302 PF02284 COX5A: Cytochrome c o 83.2 16 0.00036 28.3 8.7 50 353-402 25-74 (108)
303 PF11207 DUF2989: Protein of u 83.2 13 0.00028 33.1 9.4 73 425-498 123-198 (203)
304 KOG2066 Vacuolar assembly/sort 82.5 79 0.0017 34.4 27.9 95 244-348 370-467 (846)
305 PF02259 FAT: FAT domain; Int 81.8 58 0.0013 32.4 23.6 65 442-506 145-212 (352)
306 PF07719 TPR_2: Tetratricopept 80.8 3.5 7.6E-05 24.2 3.8 27 580-606 1-27 (34)
307 PF07721 TPR_4: Tetratricopept 80.6 2.9 6.3E-05 23.1 3.1 24 582-605 3-26 (26)
308 KOG0276 Vesicle coat complex C 79.5 41 0.00088 35.3 12.6 98 419-538 648-745 (794)
309 KOG1550 Extracellular protein 79.5 90 0.0019 33.5 16.3 183 355-545 229-428 (552)
310 KOG2063 Vacuolar assembly/sort 78.0 64 0.0014 36.2 14.5 115 376-490 507-638 (877)
311 PF13374 TPR_10: Tetratricopep 78.0 4.7 0.0001 25.0 4.0 29 301-329 2-30 (42)
312 PF00515 TPR_1: Tetratricopept 77.8 5.1 0.00011 23.6 3.8 27 580-606 1-27 (34)
313 KOG1550 Extracellular protein 77.0 1.1E+02 0.0024 32.8 24.4 186 246-474 228-428 (552)
314 COG3947 Response regulator con 76.9 69 0.0015 30.4 16.4 56 413-469 284-339 (361)
315 PF00637 Clathrin: Region in C 76.8 0.88 1.9E-05 38.6 0.3 128 379-529 13-140 (143)
316 PF13431 TPR_17: Tetratricopep 76.4 3.8 8.3E-05 24.4 2.9 22 300-321 12-33 (34)
317 PF13374 TPR_10: Tetratricopep 76.1 7.6 0.00017 24.0 4.6 26 445-470 4-29 (42)
318 COG4455 ImpE Protein of avirul 76.0 16 0.00034 32.9 7.6 77 268-345 3-81 (273)
319 PF10345 Cohesin_load: Cohesin 75.4 1.3E+02 0.0028 32.8 33.0 188 248-469 39-251 (608)
320 KOG0276 Vesicle coat complex C 73.2 40 0.00086 35.3 10.6 101 383-504 647-747 (794)
321 PF00515 TPR_1: Tetratricopept 73.0 12 0.00025 22.0 4.6 27 445-471 3-29 (34)
322 KOG4234 TPR repeat-containing 72.5 26 0.00056 31.1 7.9 102 486-589 103-211 (271)
323 PF13762 MNE1: Mitochondrial s 72.5 40 0.00087 28.4 8.9 91 260-350 31-129 (145)
324 PF13181 TPR_8: Tetratricopept 72.1 8.3 0.00018 22.6 3.8 26 581-606 2-27 (34)
325 KOG1941 Acetylcholine receptor 71.6 1.1E+02 0.0023 30.2 17.5 20 303-322 45-64 (518)
326 PF10366 Vps39_1: Vacuolar sor 70.7 41 0.0009 26.7 8.4 27 410-436 41-67 (108)
327 PHA02875 ankyrin repeat protei 70.2 1.3E+02 0.0029 30.7 14.6 184 271-478 37-230 (413)
328 TIGR02561 HrpB1_HrpK type III 69.6 68 0.0015 27.1 12.2 53 277-331 21-74 (153)
329 KOG2063 Vacuolar assembly/sort 69.4 2E+02 0.0044 32.4 18.7 27 303-329 506-532 (877)
330 COG4455 ImpE Protein of avirul 68.8 40 0.00086 30.5 8.4 77 375-452 3-81 (273)
331 PF11848 DUF3368: Domain of un 68.0 17 0.00037 23.8 4.7 36 137-172 10-45 (48)
332 PF11207 DUF2989: Protein of u 66.6 98 0.0021 27.8 11.8 99 81-183 96-197 (203)
333 KOG0989 Replication factor C, 66.6 30 0.00066 33.0 7.7 55 82-137 197-251 (346)
334 COG0457 NrfG FOG: TPR repeat [ 65.1 1E+02 0.0022 27.5 30.8 198 376-578 62-268 (291)
335 PF07719 TPR_2: Tetratricopept 64.5 22 0.00048 20.5 4.6 25 447-471 5-29 (34)
336 PF07163 Pex26: Pex26 protein; 64.4 88 0.0019 29.6 10.1 88 414-501 89-181 (309)
337 KOG4234 TPR repeat-containing 64.2 1.1E+02 0.0023 27.4 10.0 96 451-551 103-203 (271)
338 PRK15180 Vi polysaccharide bio 64.1 91 0.002 31.8 10.8 118 420-542 301-419 (831)
339 PF07163 Pex26: Pex26 protein; 64.0 1E+02 0.0022 29.1 10.4 90 273-396 90-181 (309)
340 TIGR03504 FimV_Cterm FimV C-te 63.7 16 0.00034 23.4 3.8 25 272-296 5-29 (44)
341 PF13929 mRNA_stabil: mRNA sta 63.6 1.4E+02 0.003 28.5 17.5 115 389-503 144-263 (292)
342 cd00280 TRFH Telomeric Repeat 63.5 1E+02 0.0023 27.0 9.7 49 246-294 85-139 (200)
343 PF13181 TPR_8: Tetratricopept 62.5 25 0.00053 20.4 4.5 26 446-471 4-29 (34)
344 PF13174 TPR_6: Tetratricopept 62.2 6.7 0.00015 22.7 1.9 24 583-606 3-26 (33)
345 COG5159 RPN6 26S proteasome re 62.1 1.5E+02 0.0032 28.2 16.4 48 136-183 10-64 (421)
346 KOG2297 Predicted translation 61.9 1.5E+02 0.0033 28.4 22.0 108 68-177 34-159 (412)
347 TIGR03504 FimV_Cterm FimV C-te 61.5 18 0.00039 23.2 3.7 23 520-542 5-27 (44)
348 KOG1586 Protein required for f 61.2 1.4E+02 0.0029 27.6 14.5 19 557-575 165-183 (288)
349 PF06552 TOM20_plant: Plant sp 60.5 1.2E+02 0.0026 26.7 10.7 63 475-546 65-139 (186)
350 KOG1585 Protein required for f 60.1 1.5E+02 0.0032 27.6 15.6 202 375-605 33-252 (308)
351 PF13934 ELYS: Nuclear pore co 60.0 1.4E+02 0.0031 27.5 15.1 132 481-620 79-212 (226)
352 PF10579 Rapsyn_N: Rapsyn N-te 59.9 28 0.00061 25.6 4.9 45 491-535 19-64 (80)
353 PF10579 Rapsyn_N: Rapsyn N-te 59.7 28 0.00061 25.6 4.9 51 450-501 14-66 (80)
354 PRK10564 maltose regulon perip 59.5 25 0.00055 33.5 6.0 47 510-556 252-299 (303)
355 PF11848 DUF3368: Domain of un 58.9 38 0.00083 22.1 5.1 33 526-558 14-46 (48)
356 PF11846 DUF3366: Domain of un 58.8 24 0.00052 31.6 5.7 53 106-158 121-173 (193)
357 KOG4648 Uncharacterized conser 55.6 72 0.0016 30.9 8.2 53 451-504 105-157 (536)
358 KOG4077 Cytochrome c oxidase, 55.5 92 0.002 25.4 7.4 46 462-507 68-113 (149)
359 PF08311 Mad3_BUB1_I: Mad3/BUB 55.4 42 0.00092 27.5 6.1 41 564-604 81-123 (126)
360 PF11846 DUF3366: Domain of un 55.1 66 0.0014 28.8 7.9 32 511-542 141-172 (193)
361 PF14689 SPOB_a: Sensor_kinase 55.0 35 0.00075 23.8 4.7 25 411-435 26-50 (62)
362 smart00777 Mad3_BUB1_I Mad3/BU 54.8 61 0.0013 26.6 6.7 40 565-604 82-123 (125)
363 KOG0991 Replication factor C, 54.5 1.5E+02 0.0033 27.3 9.5 72 227-299 189-271 (333)
364 KOG2396 HAT (Half-A-TPR) repea 53.9 2.8E+02 0.006 28.8 30.6 55 552-606 466-522 (568)
365 PRK07003 DNA polymerase III su 53.5 87 0.0019 34.6 9.4 78 82-160 187-276 (830)
366 PF11663 Toxin_YhaV: Toxin wit 53.4 15 0.00033 30.1 3.0 31 142-174 108-138 (140)
367 PF07575 Nucleopor_Nup85: Nup8 53.3 3.2E+02 0.007 29.5 21.4 92 376-471 375-466 (566)
368 PF08424 NRDE-2: NRDE-2, neces 53.2 2.3E+02 0.0051 27.8 18.2 120 424-545 47-185 (321)
369 PRK11619 lytic murein transgly 53.1 3.5E+02 0.0075 29.8 29.8 271 263-574 96-374 (644)
370 PF10366 Vps39_1: Vacuolar sor 52.8 1.2E+02 0.0025 24.2 8.1 27 303-329 41-67 (108)
371 COG5187 RPN7 26S proteasome re 52.7 2.1E+02 0.0046 27.2 10.8 73 260-332 109-186 (412)
372 PF04190 DUF410: Protein of un 52.5 2.1E+02 0.0046 27.1 18.2 82 372-472 89-170 (260)
373 TIGR02508 type_III_yscG type I 52.3 1.1E+02 0.0024 23.8 8.8 59 416-481 47-105 (115)
374 PRK11619 lytic murein transgly 52.1 3.6E+02 0.0078 29.6 36.1 237 79-329 82-340 (644)
375 smart00386 HAT HAT (Half-A-TPR 50.8 32 0.0007 19.4 3.6 29 560-588 1-29 (33)
376 PF13762 MNE1: Mitochondrial s 50.0 1.6E+02 0.0034 24.9 12.1 81 411-491 42-128 (145)
377 cd00280 TRFH Telomeric Repeat 48.6 1.9E+02 0.0042 25.5 12.7 48 389-436 85-139 (200)
378 PF03474 DMA: DMRTA motif; In 47.1 62 0.0014 20.1 4.2 32 85-116 7-38 (39)
379 KOG0687 26S proteasome regulat 47.1 2.8E+02 0.0061 27.0 14.6 41 267-307 105-149 (393)
380 PHA02875 ankyrin repeat protei 46.7 1.5E+02 0.0032 30.3 10.1 190 359-570 16-223 (413)
381 COG5108 RPO41 Mitochondrial DN 46.5 1.9E+02 0.004 31.1 10.0 91 378-471 33-131 (1117)
382 smart00546 CUE Domain that may 46.4 74 0.0016 20.1 5.0 35 83-117 6-40 (43)
383 KOG1586 Protein required for f 46.3 2.4E+02 0.0053 26.0 17.1 53 525-577 165-226 (288)
384 smart00638 LPD_N Lipoprotein N 46.0 4.2E+02 0.0091 28.7 25.3 102 265-372 309-410 (574)
385 PF14669 Asp_Glu_race_2: Putat 46.0 2.2E+02 0.0047 25.4 15.7 70 305-397 136-205 (233)
386 PF09868 DUF2095: Uncharacteri 45.9 75 0.0016 25.2 5.5 43 260-309 61-103 (128)
387 TIGR01503 MthylAspMut_E methyl 45.5 47 0.001 33.7 5.6 220 316-574 29-268 (480)
388 PF11663 Toxin_YhaV: Toxin wit 45.4 24 0.00052 29.0 2.9 29 492-523 109-137 (140)
389 PF14689 SPOB_a: Sensor_kinase 45.3 61 0.0013 22.6 4.7 22 484-505 29-50 (62)
390 smart00028 TPR Tetratricopepti 45.2 26 0.00056 19.1 2.6 26 581-606 2-27 (34)
391 PLN03025 replication factor C 44.8 2.7E+02 0.0058 27.3 11.0 89 80-169 165-264 (319)
392 KOG0686 COP9 signalosome, subu 44.4 3.5E+02 0.0076 27.3 13.6 63 409-471 151-215 (466)
393 TIGR02508 type_III_yscG type I 44.1 1.5E+02 0.0033 23.1 7.7 50 487-543 48-97 (115)
394 PRK14956 DNA polymerase III su 43.7 2.8E+02 0.006 29.0 11.0 39 83-121 190-228 (484)
395 KOG2168 Cullins [Cell cycle co 43.7 5.1E+02 0.011 29.0 21.3 44 271-316 330-374 (835)
396 KOG4077 Cytochrome c oxidase, 43.7 1.8E+02 0.0039 23.8 9.0 49 354-402 65-113 (149)
397 COG2909 MalT ATP-dependent tra 43.5 5.2E+02 0.011 29.1 31.6 187 384-571 469-684 (894)
398 PRK08691 DNA polymerase III su 43.2 4.1E+02 0.0088 29.4 12.4 78 82-161 187-277 (709)
399 PF04910 Tcf25: Transcriptiona 43.0 3.4E+02 0.0073 27.3 11.3 149 447-605 14-164 (360)
400 KOG4648 Uncharacterized conser 42.4 1.8E+02 0.0039 28.4 8.5 81 416-506 105-186 (536)
401 COG0735 Fur Fe2+/Zn2+ uptake r 42.2 1.6E+02 0.0034 24.9 7.7 49 396-445 9-57 (145)
402 KOG0686 COP9 signalosome, subu 41.9 3.8E+02 0.0083 27.0 14.2 64 374-437 151-216 (466)
403 PRK13342 recombination factor 41.9 4E+02 0.0087 27.3 16.9 43 304-346 230-275 (413)
404 PF11838 ERAP1_C: ERAP1-like C 41.6 3.4E+02 0.0075 26.4 18.9 109 389-502 146-261 (324)
405 PRK14956 DNA polymerase III su 41.5 4.4E+02 0.0095 27.6 12.0 92 224-338 194-285 (484)
406 KOG4507 Uncharacterized conser 41.5 2.8E+02 0.006 29.4 10.2 150 333-485 568-717 (886)
407 PF02845 CUE: CUE domain; Int 41.3 90 0.0019 19.6 5.5 34 84-117 6-39 (42)
408 PRK14970 DNA polymerase III su 40.9 3.5E+02 0.0075 27.2 11.4 79 83-162 177-267 (367)
409 PHA02940 hypothetical protein; 40.6 3E+02 0.0064 25.4 12.4 71 268-346 144-214 (315)
410 PF04762 IKI3: IKI3 family; I 40.4 5.4E+02 0.012 29.8 13.7 28 375-402 814-843 (928)
411 PF10475 DUF2450: Protein of u 40.1 3.4E+02 0.0073 26.2 10.7 110 483-602 103-219 (291)
412 COG5108 RPO41 Mitochondrial DN 40.1 2.3E+02 0.0051 30.4 9.6 91 413-506 33-131 (1117)
413 PRK14951 DNA polymerase III su 39.9 4.6E+02 0.01 28.6 12.3 78 83-162 193-283 (618)
414 COG5159 RPN6 26S proteasome re 39.8 3.4E+02 0.0074 25.9 18.3 136 379-514 9-164 (421)
415 PF10475 DUF2450: Protein of u 39.3 2.6E+02 0.0056 27.1 9.7 109 379-498 104-217 (291)
416 KOG2297 Predicted translation 39.2 3.6E+02 0.0079 26.0 17.8 74 380-463 262-341 (412)
417 COG4003 Uncharacterized protei 39.1 1.1E+02 0.0024 22.5 5.1 39 260-305 31-69 (98)
418 KOG2396 HAT (Half-A-TPR) repea 39.1 4.7E+02 0.01 27.3 35.3 84 112-201 90-174 (568)
419 smart00638 LPD_N Lipoprotein N 39.0 5.3E+02 0.012 27.9 23.5 63 372-439 309-371 (574)
420 PF01347 Vitellogenin_N: Lipop 38.8 5.5E+02 0.012 28.0 15.4 227 391-619 322-579 (618)
421 PF09670 Cas_Cas02710: CRISPR- 38.2 4.4E+02 0.0095 26.7 11.7 55 452-507 140-198 (379)
422 KOG2066 Vacuolar assembly/sort 38.1 6E+02 0.013 28.2 26.9 152 273-436 363-533 (846)
423 PRK14958 DNA polymerase III su 37.5 3.8E+02 0.0083 28.4 11.3 77 84-162 189-278 (509)
424 PRK10564 maltose regulon perip 37.5 58 0.0013 31.2 4.6 47 125-171 252-299 (303)
425 PRK06645 DNA polymerase III su 36.7 3E+02 0.0065 29.1 10.2 39 83-121 197-235 (507)
426 TIGR02397 dnaX_nterm DNA polym 36.6 4.4E+02 0.0095 26.2 12.1 78 84-162 187-276 (355)
427 PRK10941 hypothetical protein; 36.4 1.5E+02 0.0032 28.2 7.3 56 518-575 185-244 (269)
428 PF09454 Vps23_core: Vps23 cor 35.7 84 0.0018 22.2 4.2 49 406-455 6-54 (65)
429 PRK13342 recombination factor 35.6 5.1E+02 0.011 26.6 19.5 29 298-328 173-201 (413)
430 PF11838 ERAP1_C: ERAP1-like C 35.4 4.3E+02 0.0093 25.7 19.5 145 459-607 146-306 (324)
431 PF12862 Apc5: Anaphase-promot 34.8 1.6E+02 0.0035 22.5 6.2 18 524-541 51-68 (94)
432 PF09454 Vps23_core: Vps23 cor 34.4 73 0.0016 22.5 3.7 52 263-315 5-56 (65)
433 PF11817 Foie-gras_1: Foie gra 34.1 1.8E+02 0.0039 27.2 7.6 54 484-537 184-241 (247)
434 PF11768 DUF3312: Protein of u 34.0 4.4E+02 0.0096 27.8 10.5 61 412-472 412-473 (545)
435 KOG3036 Protein involved in ce 34.0 2.8E+02 0.0061 25.8 8.0 62 559-620 209-272 (293)
436 KOG0890 Protein kinase of the 33.6 1.1E+03 0.025 30.1 33.4 96 243-346 1396-1493(2382)
437 PRK14961 DNA polymerase III su 33.4 3.9E+02 0.0084 26.8 10.3 36 86-121 191-226 (363)
438 COG2909 MalT ATP-dependent tra 32.4 7.8E+02 0.017 27.8 26.5 202 231-433 459-684 (894)
439 KOG3807 Predicted membrane pro 32.1 4.9E+02 0.011 25.4 13.7 51 489-539 286-336 (556)
440 COG2976 Uncharacterized protei 31.4 3.9E+02 0.0084 24.0 15.9 88 451-544 97-189 (207)
441 PF09868 DUF2095: Uncharacteri 31.2 2.1E+02 0.0046 22.8 5.9 31 379-410 67-97 (128)
442 PRK08691 DNA polymerase III su 30.9 5.4E+02 0.012 28.4 11.1 31 304-335 249-279 (709)
443 smart00777 Mad3_BUB1_I Mad3/BU 30.8 3E+02 0.0066 22.6 7.3 71 249-325 52-123 (125)
444 KOG4567 GTPase-activating prot 30.7 3.2E+02 0.0068 26.4 8.1 43 429-471 264-306 (370)
445 PRK14960 DNA polymerase III su 30.6 6.6E+02 0.014 27.7 11.5 77 83-161 187-276 (702)
446 KOG1464 COP9 signalosome, subu 30.5 4.7E+02 0.01 24.7 19.4 129 372-501 104-254 (440)
447 KOG2659 LisH motif-containing 30.1 4.4E+02 0.0095 24.2 9.6 55 449-503 70-128 (228)
448 PRK11639 zinc uptake transcrip 29.9 2.8E+02 0.006 24.2 7.5 59 258-317 18-76 (169)
449 COG0735 Fur Fe2+/Zn2+ uptake r 29.7 2.2E+02 0.0049 24.0 6.7 61 432-493 10-70 (145)
450 PF07720 TPR_3: Tetratricopept 29.4 1.3E+02 0.0029 18.2 3.8 23 582-604 3-25 (36)
451 KOG4567 GTPase-activating prot 29.3 3.3E+02 0.0072 26.3 8.0 58 463-526 263-320 (370)
452 PF14853 Fis1_TPR_C: Fis1 C-te 29.2 1.3E+02 0.0029 20.2 4.1 20 523-542 10-29 (53)
453 cd08819 CARD_MDA5_2 Caspase ac 29.0 2.6E+02 0.0056 21.2 6.6 13 423-435 51-63 (88)
454 PRK11639 zinc uptake transcrip 28.9 3.1E+02 0.0067 23.9 7.6 43 415-457 32-74 (169)
455 cd08819 CARD_MDA5_2 Caspase ac 28.8 2.6E+02 0.0057 21.2 7.4 64 463-533 22-85 (88)
456 PRK13800 putative oxidoreducta 28.6 9.7E+02 0.021 27.7 27.0 246 298-575 632-881 (897)
457 KOG2908 26S proteasome regulat 28.5 4.6E+02 0.01 25.8 8.9 87 413-499 80-178 (380)
458 PRK14963 DNA polymerase III su 28.4 5.1E+02 0.011 27.5 10.4 77 84-162 186-274 (504)
459 smart00804 TAP_C C-terminal do 28.3 1.4E+02 0.003 21.0 4.2 39 91-129 23-61 (63)
460 COG5187 RPN7 26S proteasome re 28.3 5.4E+02 0.012 24.7 11.2 98 372-471 114-220 (412)
461 PRK09687 putative lyase; Provi 28.2 5.4E+02 0.012 24.7 29.7 17 127-143 35-51 (280)
462 PRK14965 DNA polymerase III su 28.2 7.9E+02 0.017 26.6 12.5 78 83-161 188-277 (576)
463 COG5210 GTPase-activating prot 28.1 5.6E+02 0.012 27.1 10.8 55 428-482 362-416 (496)
464 PRK06305 DNA polymerase III su 27.8 6.2E+02 0.013 26.4 10.8 74 87-162 194-280 (451)
465 PF04090 RNA_pol_I_TF: RNA pol 27.7 4.6E+02 0.0099 23.6 10.7 28 410-437 43-70 (199)
466 KOG1258 mRNA processing protei 26.9 8E+02 0.017 26.2 35.4 182 407-594 296-489 (577)
467 smart00804 TAP_C C-terminal do 26.8 1.3E+02 0.0028 21.1 3.9 32 235-266 30-61 (63)
468 PRK07003 DNA polymerase III su 26.8 9.6E+02 0.021 27.1 14.4 35 300-335 245-279 (830)
469 KOG2659 LisH motif-containing 26.6 5.1E+02 0.011 23.8 10.3 63 441-505 24-91 (228)
470 COG4003 Uncharacterized protei 26.5 2.7E+02 0.0058 20.6 5.4 30 379-409 37-66 (98)
471 PF11817 Foie-gras_1: Foie gra 26.5 3.1E+02 0.0066 25.7 7.7 21 414-434 184-204 (247)
472 PF09477 Type_III_YscG: Bacter 26.5 3.3E+02 0.0072 21.6 8.8 81 386-473 19-99 (116)
473 PRK14962 DNA polymerase III su 26.4 7.7E+02 0.017 25.9 13.5 114 80-193 183-313 (472)
474 KOG0011 Nucleotide excision re 26.3 2.8E+02 0.0062 26.9 7.1 29 93-121 147-176 (340)
475 PF09670 Cas_Cas02710: CRISPR- 26.2 7E+02 0.015 25.3 12.2 18 385-402 143-160 (379)
476 PRK14963 DNA polymerase III su 26.1 6.1E+02 0.013 26.9 10.5 74 259-335 190-275 (504)
477 PF12862 Apc5: Anaphase-promot 25.6 3.1E+02 0.0066 20.9 8.4 18 488-505 51-68 (94)
478 PRK12323 DNA polymerase III su 25.2 9.5E+02 0.021 26.5 12.3 95 80-176 190-296 (700)
479 cd07153 Fur_like Ferric uptake 25.1 2E+02 0.0043 22.9 5.5 46 272-317 6-51 (116)
480 PRK09111 DNA polymerase III su 24.9 6.3E+02 0.014 27.5 10.4 78 82-162 200-291 (598)
481 COG2812 DnaX DNA polymerase II 24.4 3.4E+02 0.0074 28.7 8.0 78 82-162 187-278 (515)
482 KOG0687 26S proteasome regulat 24.4 6.8E+02 0.015 24.5 15.1 93 481-573 107-208 (393)
483 KOG1114 Tripeptidyl peptidase 24.1 1.1E+03 0.024 27.0 15.5 71 459-529 1212-1282(1304)
484 PF02847 MA3: MA3 domain; Int 24.1 3.6E+02 0.0078 21.2 7.7 20 308-327 9-28 (113)
485 KOG4521 Nuclear pore complex, 24.0 1.1E+03 0.024 27.7 11.9 57 481-537 986-1044(1480)
486 cd07153 Fur_like Ferric uptake 23.8 1.8E+02 0.0038 23.2 4.9 47 135-181 6-52 (116)
487 PRK09462 fur ferric uptake reg 23.8 4.3E+02 0.0094 22.3 7.5 34 424-457 33-66 (148)
488 PRK06645 DNA polymerase III su 23.6 6.7E+02 0.014 26.6 10.1 36 300-336 257-292 (507)
489 PRK10941 hypothetical protein; 23.6 6.5E+02 0.014 24.0 11.5 56 414-470 187-242 (269)
490 PF02847 MA3: MA3 domain; Int 23.6 3E+02 0.0066 21.7 6.3 23 378-400 7-29 (113)
491 COG4785 NlpI Lipoprotein NlpI, 23.3 5.9E+02 0.013 23.4 15.0 160 373-544 99-267 (297)
492 PRK14971 DNA polymerase III su 23.2 9.3E+02 0.02 26.3 11.4 79 83-162 190-280 (614)
493 PF01475 FUR: Ferric uptake re 21.9 1.8E+02 0.004 23.4 4.6 47 270-316 11-57 (120)
494 PRK09462 fur ferric uptake reg 21.8 4.9E+02 0.011 21.9 7.4 57 259-316 10-67 (148)
495 COG2178 Predicted RNA-binding 21.8 5.9E+02 0.013 22.8 11.4 78 243-330 16-98 (204)
496 PRK14958 DNA polymerase III su 21.7 9.8E+02 0.021 25.4 12.4 39 362-402 189-227 (509)
497 PF10345 Cohesin_load: Cohesin 21.5 1.1E+03 0.023 25.8 38.7 188 419-606 372-603 (608)
498 PF09477 Type_III_YscG: Bacter 21.5 4.2E+02 0.0092 21.1 8.5 30 510-541 67-96 (116)
499 PF10255 Paf67: RNA polymerase 21.4 8.9E+02 0.019 24.7 14.8 60 376-435 125-191 (404)
500 KOG3807 Predicted membrane pro 21.3 7.8E+02 0.017 24.1 9.5 18 454-471 286-303 (556)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1e-65 Score=572.33 Aligned_cols=500 Identities=15% Similarity=0.143 Sum_probs=417.2
Q ss_pred CCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHH
Q 037477 106 DNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAA 185 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~ 185 (639)
.|+++.|+++|+.|.+ ||+.+||+||.+|++.|++++|+.+|++|...|+.||..||+++|++|+..+++ ..
T Consensus 134 ~g~~~~A~~~f~~m~~-----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~---~~ 205 (857)
T PLN03077 134 FGELVHAWYVFGKMPE-----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL---AR 205 (857)
T ss_pred CCChHHHHHHHhcCCC-----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch---hh
Confidence 6899999999999987 899999999999999999999999999999999999999999999999988754 45
Q ss_pred HHHHHHHHhhhccchh--HHHHHHHHHhcCCchHHHHHHHhhcc--CcCCHHHHHHHHHHhccChHHHHHHHHHHhccCC
Q 037477 186 LNQFHDGMVKEIAMDN--VAKTLVDVVLGSDWDDKIGKKLEDMK--IELSDNFVLTVLKELRIYPVKALGFFRWVGEHSG 261 (639)
Q Consensus 186 ~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~ 261 (639)
+.+++..+.+.+..++ +++.++.+|+++|..+.+.+.|++|. ...+|+.++..+.+ .+..++|+++|++|. ..|
T Consensus 206 ~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~-~g~~~eAl~lf~~M~-~~g 283 (857)
T PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFE-NGECLEGLELFFTMR-ELS 283 (857)
T ss_pred HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHh-CCCHHHHHHHHHHHH-HcC
Confidence 6788999998886665 78999999999999999999999997 45799999999988 588999999999996 678
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHH
Q 037477 262 YKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSL 341 (639)
Q Consensus 262 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ 341 (639)
+.||..||+.+|.+|++.|+++.|.+++..|.+.|+.||..+|+++|.+|++.|++++|.++|++|. .||..+|+.
T Consensus 284 ~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~ 359 (857)
T PLN03077 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTA 359 (857)
T ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHH
Confidence 9999999999999999999999999999999988988888888888888888888888888888875 367777888
Q ss_pred HHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 037477 342 LLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKA 421 (639)
Q Consensus 342 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 421 (639)
++.+|++.+. .+.+..++.+|.+.|..||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|++||++|++.
T Consensus 360 li~~~~~~g~--~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~ 437 (857)
T PLN03077 360 MISGYEKNGL--PDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC 437 (857)
T ss_pred HHHHHHhCCC--HHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHc
Confidence 8877777663 55777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH--------------------------------
Q 037477 422 GRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKM-------------------------------- 469 (639)
Q Consensus 422 g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m-------------------------------- 469 (639)
|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|.++|++|
T Consensus 438 g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~ 513 (857)
T PLN03077 438 KCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHA 513 (857)
T ss_pred CCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHH
Confidence 777777777766654 34445555555555555555555555555
Q ss_pred --HHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 037477 470 --MEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPP 547 (639)
Q Consensus 470 --~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 547 (639)
.+.|+.+|..++++||++|+++|++++|+++|+.+ .||..+|++||.+|++.|+.++|+++|++|.+.|+.|
T Consensus 514 ~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P 587 (857)
T PLN03077 514 HVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP 587 (857)
T ss_pred HHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 44455555555556666777777777777777665 5789999999999999999999999999999999999
Q ss_pred ChHhHHHHH---hhcCCHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCccccCChhHHHhhhc
Q 037477 548 FPEPFVQYI---SKFGTVEDASEFLKALSVK--EYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHHIRQDSKISLLFGS 622 (639)
Q Consensus 548 ~~~~~~~ll---~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~~~ 622 (639)
|..||..++ ++.|++++|.++|+.|.+. ..|+..+|++++++|++.|++++|.+++++|+..+....|.+++.+|
T Consensus 588 d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac 667 (857)
T PLN03077 588 DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNAC 667 (857)
T ss_pred CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
Confidence 999999887 4679999999999999843 78999999999999999999999999999999888888899999999
Q ss_pred cCCCcccCC
Q 037477 623 AKSNKVTIP 631 (639)
Q Consensus 623 ~~~~~~~~~ 631 (639)
..+++.++.
T Consensus 668 ~~~~~~e~~ 676 (857)
T PLN03077 668 RIHRHVELG 676 (857)
T ss_pred HHcCChHHH
Confidence 888877643
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.5e-63 Score=541.66 Aligned_cols=492 Identities=12% Similarity=0.154 Sum_probs=446.0
Q ss_pred CCChHHHHHHHHHHhhcCC-CCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHH
Q 037477 106 DNDPEKASAFFNWVCDKKQ-FRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLA 184 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~ 184 (639)
.|++++|+++|++|.+ .| +.++...++.++..|.+.|.+++|+.+|+.|.. ||..||+.+|.+|++.|+++++
T Consensus 383 ~G~l~eAl~Lfd~M~~-~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A- 456 (1060)
T PLN03218 383 DGRIKDCIDLLEDMEK-RGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGA- 456 (1060)
T ss_pred CcCHHHHHHHHHHHHh-CCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHH-
Confidence 5899999999999998 55 457888899999999999999999999999985 9999999999999999877665
Q ss_pred HHHHHHHHHhhhccchh--HHHHHHHHHhcCCchHHHHHHHhhcc------CcCCHHHHHHHHHHhccChHHHHHHHHHH
Q 037477 185 ALNQFHDGMVKEIAMDN--VAKTLVDVVLGSDWDDKIGKKLEDMK------IELSDNFVLTVLKELRIYPVKALGFFRWV 256 (639)
Q Consensus 185 ~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~A~~~f~~~ 256 (639)
.++|..|.+.+..++ +++.++.+|++.|..+.+.+.+++|. ...+++.++..+... ++.++|+++|+.|
T Consensus 457 --~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~-G~~eeAl~lf~~M 533 (1060)
T PLN03218 457 --LRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA-GQVAKAFGAYGIM 533 (1060)
T ss_pred --HHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC-cCHHHHHHHHHHH
Confidence 677888988887665 78999999999999999999998884 346788888888874 8899999999999
Q ss_pred hccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC
Q 037477 257 GEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKK--EGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKP 334 (639)
Q Consensus 257 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p 334 (639)
. ..|+.||..+||.||.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.|
T Consensus 534 ~-~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p 612 (1060)
T PLN03218 534 R-SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612 (1060)
T ss_pred H-HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 5 689999999999999999999999999999999986 6789999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHH
Q 037477 335 SVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQV 414 (639)
Q Consensus 335 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 414 (639)
+..+|+.+|.+|++.+ +.+.+..++..|.+.|..||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++|
T Consensus 613 ~~~tynsLI~ay~k~G--~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsL 690 (1060)
T PLN03218 613 TPEVYTIAVNSCSQKG--DWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL 690 (1060)
T ss_pred ChHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 9999999999999987 57799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh
Q 037477 415 IFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRV 494 (639)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 494 (639)
|.+|++.|++++|.++|++|.+.|+.||..+||.||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++
T Consensus 691 I~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~l 770 (1060)
T PLN03218 691 MGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA 770 (1060)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHHHhCCCCCChHh
Q 037477 495 NGAYKLLVEMIEKVRLRPWQATFKTLIEKLLG----A-------------------RRLEEAMNLLRLMKKQNYPPFPEP 551 (639)
Q Consensus 495 ~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~-------------------g~~~~A~~~~~~m~~~~~~p~~~~ 551 (639)
++|.++|++|.+. |+.||..+|++++..|.+ + +..++|..+|++|.+.|+.||..|
T Consensus 771 e~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T 849 (1060)
T PLN03218 771 DVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEV 849 (1060)
T ss_pred HHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHH
Confidence 9999999999987 999999999999876432 1 224679999999999999999999
Q ss_pred HHHHH---hhcCCHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCccccC
Q 037477 552 FVQYI---SKFGTVEDASEFLKALSVK-EYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHHIRQ 612 (639)
Q Consensus 552 ~~~ll---~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 612 (639)
|..++ ++.+..+.+..+++.|... ..++..+|++|++++.+. .++|..++++|...+..
T Consensus 850 ~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~ 912 (1060)
T PLN03218 850 LSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVV 912 (1060)
T ss_pred HHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCC
Confidence 99888 3446778888888877755 788999999999998432 36899999998554433
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.6e-63 Score=548.91 Aligned_cols=498 Identities=15% Similarity=0.141 Sum_probs=462.4
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 037477 97 SVVYVLRKLDNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKK 176 (639)
Q Consensus 97 ~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~ 176 (639)
.++..+.+ +|+++.|.++|+.|.+ ||+.+||+||.+|++.|++++|+.+|++|.+.|+.||..||+++|.+|++
T Consensus 227 ~Li~~y~k-~g~~~~A~~lf~~m~~-----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~ 300 (857)
T PLN03077 227 ALITMYVK-CGDVVSARLVFDRMPR-----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACEL 300 (857)
T ss_pred HHHHHHhc-CCCHHHHHHHHhcCCC-----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Confidence 33444444 6899999999999987 89999999999999999999999999999999999999999999999999
Q ss_pred cCchhhHHHHHHHHHHHhhhccchh--HHHHHHHHHhcCCchHHHHHHHhhcc--CcCCHHHHHHHHHHhccChHHHHHH
Q 037477 177 AKKASDLAALNQFHDGMVKEIAMDN--VAKTLVDVVLGSDWDDKIGKKLEDMK--IELSDNFVLTVLKELRIYPVKALGF 252 (639)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~A~~~ 252 (639)
.|+.+. +.+++..+.+.+..++ +++.++.+|+++|..+++.+.+++|. ...+|+.++..+.. .+++++|+++
T Consensus 301 ~g~~~~---a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~-~g~~~~A~~l 376 (857)
T PLN03077 301 LGDERL---GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEK-NGLPDKALET 376 (857)
T ss_pred cCChHH---HHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHh-CCCHHHHHHH
Confidence 986655 4678889998886666 78999999999999999999999996 45799999999988 4789999999
Q ss_pred HHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC
Q 037477 253 FRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPY 332 (639)
Q Consensus 253 f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~ 332 (639)
|++|. ..|+.||..||+.+|.+|++.|++++|.++++.|.+.|+.|+..+|++||.+|++.|++++|.++|++|.+
T Consensus 377 f~~M~-~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--- 452 (857)
T PLN03077 377 YALME-QDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE--- 452 (857)
T ss_pred HHHHH-HhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---
Confidence 99995 68999999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred CCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHH
Q 037477 333 KPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYS 412 (639)
Q Consensus 333 ~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 412 (639)
+|..+|+.++.+|++.+ ...++..++.+|.. +..||..+|+.++.+|++.|+++.+.+++..|.+.|+.+|..++|
T Consensus 453 -~d~vs~~~mi~~~~~~g--~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~n 528 (857)
T PLN03077 453 -KDVISWTSIIAGLRLNN--RCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN 528 (857)
T ss_pred -CCeeeHHHHHHHHHHCC--CHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceech
Confidence 68899999999999877 46789999999976 699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 037477 413 QVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQK 492 (639)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 492 (639)
+||++|+++|++++|.++|++| .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.+|.+|++.|
T Consensus 529 aLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g 603 (857)
T PLN03077 529 ALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG 603 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC
Confidence 9999999999999999999998 48999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHh---hcCCHHHHHHHH
Q 037477 493 RVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYIS---KFGTVEDASEFL 569 (639)
Q Consensus 493 ~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~---~~g~~~~a~~~~ 569 (639)
++++|.++|+.|.+.+|+.|+..+|++|+++|++.|++++|.+++++|. +.||..+|..++. ..|+.+.|+...
T Consensus 604 ~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a 680 (857)
T PLN03077 604 MVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAA 680 (857)
T ss_pred hHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 9999999999999777999999999999999999999999999999984 8899999988874 568999999999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CccccCChhHHHhh
Q 037477 570 KALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKC-PHHIRQDSKISLLF 620 (639)
Q Consensus 570 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m-~~~~~~~~~~~~l~ 620 (639)
+++.+..|.+...|..|.+.|++.|+|++|.++.+.| ..+..+.|..+++-
T Consensus 681 ~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie 732 (857)
T PLN03077 681 QHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVE 732 (857)
T ss_pred HHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEE
Confidence 9999999999999999999999999999999999999 44566677766653
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2e-62 Score=533.14 Aligned_cols=475 Identities=16% Similarity=0.174 Sum_probs=428.6
Q ss_pred CHHHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 037477 94 THESVVYVLRKLDNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGV 173 (639)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~ 173 (639)
+...++..+.. .|++++|+++|++|....++.||..+|+.+|.+|++.++++.+.+++..|.+.|+.||..+|+.++.+
T Consensus 89 ~~~~~i~~l~~-~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~ 167 (697)
T PLN03081 89 SLCSQIEKLVA-CGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLM 167 (697)
T ss_pred eHHHHHHHHHc-CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 44555555555 68899999999999875567889999999999999999999999999999999999999999999999
Q ss_pred HHhcCchhhHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCchHHHHHHHhhccCcCCHHHHHHHHHHhccChHHHHHHH
Q 037477 174 LKKAKKASDLAALNQFHDGMVKEIAMDNVAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVKALGFF 253 (639)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f 253 (639)
|++.|+++++. ++|+.|.+ +...+|+.++..+... +++++|+++|
T Consensus 168 y~k~g~~~~A~---~lf~~m~~-------------------------------~~~~t~n~li~~~~~~-g~~~~A~~lf 212 (697)
T PLN03081 168 HVKCGMLIDAR---RLFDEMPE-------------------------------RNLASWGTIIGGLVDA-GNYREAFALF 212 (697)
T ss_pred HhcCCCHHHHH---HHHhcCCC-------------------------------CCeeeHHHHHHHHHHC-cCHHHHHHHH
Confidence 99888776653 33444432 1345677777777664 7889999999
Q ss_pred HHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC
Q 037477 254 RWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYK 333 (639)
Q Consensus 254 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~ 333 (639)
++|. +.|+.||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..+|++||.+|++.|++++|.++|++|. .
T Consensus 213 ~~M~-~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~ 287 (697)
T PLN03081 213 REMW-EDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----E 287 (697)
T ss_pred HHHH-HhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----C
Confidence 9996 6799999999999999999999999999999999999999999999999999999999999999999996 4
Q ss_pred CCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHH
Q 037477 334 PSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQ 413 (639)
Q Consensus 334 p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 413 (639)
+|..+||.++.+|++.+ +.+++..++.+|...|..||..+|+.++.+|++.|++++|.+++..|.+.|+.||..+|++
T Consensus 288 ~~~vt~n~li~~y~~~g--~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~ 365 (697)
T PLN03081 288 KTTVAWNSMLAGYALHG--YSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTA 365 (697)
T ss_pred CChhHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHH
Confidence 69999999999999987 5678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 037477 414 VIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKR 493 (639)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 493 (639)
||++|+++|++++|.++|++|.+ ||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|+
T Consensus 366 Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~ 441 (697)
T PLN03081 366 LVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGL 441 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCc
Confidence 99999999999999999999975 79999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHH---hhcCCHHHHHHHHH
Q 037477 494 VNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYI---SKFGTVEDASEFLK 570 (639)
Q Consensus 494 ~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll---~~~g~~~~a~~~~~ 570 (639)
+++|.++|+.|.+.+|+.|+..+|++|+++|++.|++++|.+++++| ++.|+..+|..++ +..|+++.|..+++
T Consensus 442 ~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~ 518 (697)
T PLN03081 442 SEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAE 518 (697)
T ss_pred HHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 99999999999987899999999999999999999999999998876 5889999998887 47799999999999
Q ss_pred HhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCcc-ccCChhHHH
Q 037477 571 ALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHH-IRQDSKISL 618 (639)
Q Consensus 571 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~ 618 (639)
++.+..|.+..+|..|+++|++.|+|++|.+++++|... ..+.|..++
T Consensus 519 ~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~ 567 (697)
T PLN03081 519 KLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTW 567 (697)
T ss_pred HHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeE
Confidence 998888888999999999999999999999999999655 344555443
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.7e-60 Score=517.95 Aligned_cols=486 Identities=14% Similarity=0.126 Sum_probs=444.2
Q ss_pred HHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCchhhHHHHHHHH
Q 037477 112 ASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHC-YIEEETYLSILGVLKKAKKASDLAALNQFH 190 (639)
Q Consensus 112 A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~-~~~~~t~~~ll~~~~~~~~~~~~~~~~~~~ 190 (639)
++...++... ..++...|..++..|++.|++++|+++|++|.+.|+ .++..+++.++.+|.+.|..+++. .++
T Consensus 356 ~~~~~~~~~~---~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl---~lf 429 (1060)
T PLN03218 356 SLAAYNGGVS---GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAF---RFA 429 (1060)
T ss_pred hHHHhccccC---CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHH---HHH
Confidence 4444444433 447888999999999999999999999999999995 578888999999999999877764 456
Q ss_pred HHHhhhccchhHHHHHHHHHhcCCchHHHHHHHhhcc------CcCCHHHHHHHHHHhccChHHHHHHHHHHhccCCCCC
Q 037477 191 DGMVKEIAMDNVAKTLVDVVLGSDWDDKIGKKLEDMK------IELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKH 264 (639)
Q Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p 264 (639)
..|.. .....++.++..|++.++.+.+.+.++.|. ...+++.++..+.. .++.++|.++|+.|. +.|+.|
T Consensus 430 ~~M~~--pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k-~G~vd~A~~vf~eM~-~~Gv~P 505 (1060)
T PLN03218 430 KLIRN--PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAK-SGKVDAMFEVFHEMV-NAGVEA 505 (1060)
T ss_pred HHcCC--CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-CcCHHHHHHHHHHHH-HcCCCC
Confidence 66655 445589999999999999999998888873 23577888888887 488999999999996 689999
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc--CCCCCCHHHHHHH
Q 037477 265 NTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMD--GPYKPSVQDCSLL 342 (639)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~--~g~~p~~~~~~~l 342 (639)
|..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.. .|+.||..+|+++
T Consensus 506 dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaL 585 (1060)
T PLN03218 506 NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGAL 585 (1060)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999976 6899999999999
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 037477 343 LRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAG 422 (639)
Q Consensus 343 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 422 (639)
|.+|++.+ +.+.+.++++.|.+.+..|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|
T Consensus 586 I~ay~k~G--~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G 663 (1060)
T PLN03218 586 MKACANAG--QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG 663 (1060)
T ss_pred HHHHHHCC--CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 99999988 5778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHH
Q 037477 423 RFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLV 502 (639)
Q Consensus 423 ~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 502 (639)
++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|+
T Consensus 664 ~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~ 743 (1060)
T PLN03218 664 DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLS 743 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHhh-------c----------------
Q 037477 503 EMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYISK-------F---------------- 559 (639)
Q Consensus 503 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-------~---------------- 559 (639)
+|.+. |+.||..||+.++.+|++.|++++|.+++++|.+.|+.||..+|..++.. +
T Consensus 744 eM~~~-Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~ 822 (1060)
T PLN03218 744 EMKRL-GLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQ 822 (1060)
T ss_pred HHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccc
Confidence 99987 99999999999999999999999999999999999999999998877631 1
Q ss_pred ---CCHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCccc
Q 037477 560 ---GTVEDASEFLKALSVK-EYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHHI 610 (639)
Q Consensus 560 ---g~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 610 (639)
+..++|..+|++|.+. ..|+..+|+.++.++++.+..+.+..+++.|...+
T Consensus 823 ~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~ 877 (1060)
T PLN03218 823 IENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISA 877 (1060)
T ss_pred cccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCC
Confidence 1236799999999987 89999999999999999999999999999885443
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.6e-57 Score=494.83 Aligned_cols=430 Identities=14% Similarity=0.134 Sum_probs=372.9
Q ss_pred CCChHHHHHHHHHHhccCChHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhhccchh--H
Q 037477 126 RPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDH-CYIEEETYLSILGVLKKAKKASDLAALNQFHDGMVKEIAMDN--V 202 (639)
Q Consensus 126 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g-~~~~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 202 (639)
.++..+|+.+|.+|++.|++++|+.+|+.|...+ +.||..||+.++.+|++.++.+. +.+++..+.+.+..++ +
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~---a~~l~~~m~~~g~~~~~~~ 160 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRC---VKAVYWHVESSGFEPDQYM 160 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHH---HHHHHHHHHHhCCCcchHH
Confidence 3677899999999999999999999999999865 78999999999999999986654 4667788887765554 6
Q ss_pred HHHHHHHHhcCCchHHHHHHHhhccCcCCHHHHHHHHHHhccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCCh
Q 037477 203 AKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESV 282 (639)
Q Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 282 (639)
++.++.+|.+ .++.++|.++|+.|. .||.++||++|.+|++.|++
T Consensus 161 ~n~Li~~y~k------------------------------~g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~~~g~~ 205 (697)
T PLN03081 161 MNRVLLMHVK------------------------------CGMLIDARRLFDEMP-----ERNLASWGTIIGGLVDAGNY 205 (697)
T ss_pred HHHHHHHHhc------------------------------CCCHHHHHHHHhcCC-----CCCeeeHHHHHHHHHHCcCH
Confidence 6777777776 356778999998885 47889999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHH
Q 037477 283 RDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVAN 362 (639)
Q Consensus 283 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 362 (639)
++|.++|++|.+.|+.||..||+.++.+|++.|..+.+.+++..+.+.|+.||..+|+.|+.+|++.+ +.+.+.++++
T Consensus 206 ~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g--~~~~A~~vf~ 283 (697)
T PLN03081 206 REAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG--DIEDARCVFD 283 (697)
T ss_pred HHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC--CHHHHHHHHH
Confidence 99999999999889999999999999999999999999999999999999999999999999999887 4667888888
Q ss_pred HHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 037477 363 KYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPD 442 (639)
Q Consensus 363 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 442 (639)
.|.. +|..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||
T Consensus 284 ~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d 359 (697)
T PLN03081 284 GMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD 359 (697)
T ss_pred hCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCC
Confidence 7753 578889999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037477 443 IKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIE 522 (639)
Q Consensus 443 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 522 (639)
..+|++||.+|++.|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+. |+.||..||+.++.
T Consensus 360 ~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~-g~~Pd~~T~~~ll~ 434 (697)
T PLN03081 360 IVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAE-GVAPNHVTFLAVLS 434 (697)
T ss_pred eeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCCHHHHHHHHH
Confidence 9999999999999999999999998885 468888999999999999999999999999886 89999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHh-CCCCCChHhHHHHH---hhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 037477 523 KLLGARRLEEAMNLLRLMKK-QNYPPFPEPFVQYI---SKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYE 598 (639)
Q Consensus 523 ~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~ll---~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 598 (639)
+|++.|.+++|.++|+.|.+ .|+.|+..+|..++ ++.|++++|.+++++|. ..|+..+|+.|+.+|...|+++.
T Consensus 435 a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~--~~p~~~~~~~Ll~a~~~~g~~~~ 512 (697)
T PLN03081 435 ACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP--FKPTVNMWAALLTACRIHKNLEL 512 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCcHH
Confidence 99999999999999999975 68889887776554 78899999998888764 56788889999999999999999
Q ss_pred HHHHHhhC
Q 037477 599 AKDLLYKC 606 (639)
Q Consensus 599 A~~~~~~m 606 (639)
|..+++++
T Consensus 513 a~~~~~~l 520 (697)
T PLN03081 513 GRLAAEKL 520 (697)
T ss_pred HHHHHHHH
Confidence 88888876
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=9.1e-24 Score=241.14 Aligned_cols=480 Identities=13% Similarity=0.046 Sum_probs=226.4
Q ss_pred CCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHH
Q 037477 106 DNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAA 185 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~ 185 (639)
.|++++|.++|+.+.+.. +.+...|..+...+...|++++|...|+++.+... .+......++..+.+.|+++++..
T Consensus 376 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~ 452 (899)
T TIGR02917 376 LGDFEKAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALA 452 (899)
T ss_pred CCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHH
Confidence 577777777777766521 12455566666666667777777777766665431 122334444555555555554432
Q ss_pred HHHHHHHHhhhc-cchhHHHHHHHHHhcCCchHHHHHHHhhcc-C-cCCH--HHHHHHHHHhccChHHHHHHHHHHhccC
Q 037477 186 LNQFHDGMVKEI-AMDNVAKTLVDVVLGSDWDDKIGKKLEDMK-I-ELSD--NFVLTVLKELRIYPVKALGFFRWVGEHS 260 (639)
Q Consensus 186 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~-~~~~--~~~~~~l~~~~~~~~~A~~~f~~~~~~~ 260 (639)
++..+.... ..+.++..+..++...|..+.+...+.+.- . +... ......+....+++++|.+.|+.+.+..
T Consensus 453 ---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 529 (899)
T TIGR02917 453 ---AAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID 529 (899)
T ss_pred ---HHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 233333321 122344555555555555555555554431 1 1111 1111111122355555555555553211
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHH
Q 037477 261 GYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCS 340 (639)
Q Consensus 261 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~ 340 (639)
+.+..++..+...+.+.|+.++|...++++.+.+ +.+...+..++..|...|++++|..+++.+.+.. +.+...|.
T Consensus 530 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 605 (899)
T TIGR02917 530 --PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWL 605 (899)
T ss_pred --cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHH
Confidence 2344555555555555555555555555554443 2344445555555555555555555555554321 23344444
Q ss_pred HHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 037477 341 LLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCK 420 (639)
Q Consensus 341 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 420 (639)
.+..++...+ +.+.+...+..+.+.. +.+...+..+..++.+.|++++|..+++++.+.. +.+..++..+...+..
T Consensus 606 ~l~~~~~~~~--~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 681 (899)
T TIGR02917 606 MLGRAQLAAG--DLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLA 681 (899)
T ss_pred HHHHHHHHcC--CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 4444444433 2334444444443322 1223344445555555555555555555554432 2234445555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHH
Q 037477 421 AGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKL 500 (639)
Q Consensus 421 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 500 (639)
.|++++|..+++.+.+.+. .+...+..+...+...|++++|.+.++.+.+.+ |+..++..+..++.+.|++++|.+.
T Consensus 682 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~ 758 (899)
T TIGR02917 682 AKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKT 758 (899)
T ss_pred cCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHH
Confidence 5555555555555544432 234444445555555555555555555554432 2223444444455555555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhH---HHHHhhcCCHHHHHHHHHHhhcCCC
Q 037477 501 LVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPF---VQYISKFGTVEDASEFLKALSVKEY 577 (639)
Q Consensus 501 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~---~~ll~~~g~~~~a~~~~~~~~~~~~ 577 (639)
++.+.+. ...+...+..+...|...|++++|.+.|+++.+.. +++...+ ..++...|+ ++|..+++++....|
T Consensus 759 ~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~ 834 (899)
T TIGR02917 759 LEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP 834 (899)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC
Confidence 5554443 12234444444455555555555555555554422 1111111 111233344 444444444444444
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 578 PSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 578 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
.++..+..+..+|...|++++|.++++++
T Consensus 835 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 863 (899)
T TIGR02917 835 NIPAILDTLGWLLVEKGEADRALPLLRKA 863 (899)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444444444444444444444444444
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=2.9e-23 Score=237.03 Aligned_cols=485 Identities=11% Similarity=0.005 Sum_probs=329.2
Q ss_pred CCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHH
Q 037477 106 DNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAA 185 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~ 185 (639)
.|+++.|...|+.+.+.. +.+...+..+...+.+.|++++|+..++.+.+.. +.+...+..+...+.+.|+++++.
T Consensus 308 ~g~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~- 383 (899)
T TIGR02917 308 LGNLEQAYQYLNQILKYA--PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAA- 383 (899)
T ss_pred cCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHH-
Confidence 577777777777776532 2345666777777888888888888888877654 345667777777888887776654
Q ss_pred HHHHHHHHhhhcc-chhHHHHHHHHHhcCCchHHHHHHHhhccC-cC----CHHHHHHHHHHhccChHHHHHHHHHHhcc
Q 037477 186 LNQFHDGMVKEIA-MDNVAKTLVDVVLGSDWDDKIGKKLEDMKI-EL----SDNFVLTVLKELRIYPVKALGFFRWVGEH 259 (639)
Q Consensus 186 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~l~~~~~~~~~A~~~f~~~~~~ 259 (639)
..+..+.+... ...+...+..++...|..+.+...+..... .+ ....+...+ ...++.++|+++++.+..
T Consensus 384 --~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~- 459 (899)
T TIGR02917 384 --EYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSY-LRSGQFDKALAAAKKLEK- 459 (899)
T ss_pred --HHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHH-HhcCCHHHHHHHHHHHHH-
Confidence 34555544332 223555666667777777766666655421 11 111111222 224777888888887753
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHH
Q 037477 260 SGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDC 339 (639)
Q Consensus 260 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~ 339 (639)
..+++..+|+.+...|...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+.+.+.+ +.+..++
T Consensus 460 -~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 536 (899)
T TIGR02917 460 -KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAI 536 (899)
T ss_pred -hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHH
Confidence 334567788888888888888888888888887653 4456667777888888888888888888887643 2345666
Q ss_pred HHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 037477 340 SLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLC 419 (639)
Q Consensus 340 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 419 (639)
..+...+...+ +...+...+..+.... +.+...+..++..|...|++++|.++++.+.+.. +.+...|..+..+|.
T Consensus 537 ~~l~~~~~~~~--~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 612 (899)
T TIGR02917 537 LALAGLYLRTG--NEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQL 612 (899)
T ss_pred HHHHHHHHHcC--CHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 66666666644 4556666666655443 2344566677778888888888888888877654 456677888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 037477 420 KAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYK 499 (639)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 499 (639)
..|++++|...|+++.+... .+...+..+...+...|++++|..+++++.+.. +.+..++..+...+...|++++|..
T Consensus 613 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 690 (899)
T TIGR02917 613 AAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKK 690 (899)
T ss_pred HcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888888776542 256677777788888888888888888877654 3456777777777888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-HhHHHHHhhcCCHHHHHHHHHHhhcCCCC
Q 037477 500 LLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFP-EPFVQYISKFGTVEDASEFLKALSVKEYP 578 (639)
Q Consensus 500 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~g~~~~a~~~~~~~~~~~~~ 578 (639)
+++.+.+.. ..+...+..+...+.+.|++++|.+.++.+...+..+.. ..+..++...|+.++|.+.++++.+..|.
T Consensus 691 ~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 768 (899)
T TIGR02917 691 IAKSLQKQH--PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN 768 (899)
T ss_pred HHHHHHhhC--cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 888777652 334556677777777788888888888877764322211 12233345667777777777777777777
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHhhCCcc
Q 037477 579 SSAAYLQVFESFFNEGRHYEAKDLLYKCPHH 609 (639)
Q Consensus 579 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 609 (639)
+...+..+...|...|++++|.++|+++...
T Consensus 769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 7777777777777777777777777776433
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.86 E-value=7.3e-16 Score=177.01 Aligned_cols=486 Identities=11% Similarity=0.024 Sum_probs=265.3
Q ss_pred cCCChHHHHHHHHHHhhcCCCCCCh-HHH----------------HHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHH
Q 037477 105 LDNDPEKASAFFNWVCDKKQFRPSS-TVY----------------SLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETY 167 (639)
Q Consensus 105 ~~~~~~~A~~~f~~~~~~~~~~~~~-~~~----------------~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~ 167 (639)
..|+.++|.+.++.+.+.. |+. ..+ -.+...+.+.|++++|+..|+...+.+ +|+...-
T Consensus 74 ~~g~~~~A~~~l~~l~~~~---P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la 149 (1157)
T PRK11447 74 RQGDSDGAQKLLDRLSQLA---PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLA 149 (1157)
T ss_pred hCCCHHHHHHHHHHHHhhC---CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHH
Confidence 3799999999999998843 332 222 223346788999999999999988754 3333211
Q ss_pred HHHHHHH-HhcCchhhHHHHHHHHHHHhhhccc-hhHHHHHHHHHhcCCchHHHHHHHhhccCcCC--HHHHHHHH----
Q 037477 168 LSILGVL-KKAKKASDLAALNQFHDGMVKEIAM-DNVAKTLVDVVLGSDWDDKIGKKLEDMKIELS--DNFVLTVL---- 239 (639)
Q Consensus 168 ~~ll~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l---- 239 (639)
....... ...|+.+++ ...++.+.+..+. +.+...+-.++...+..+++...++++..... .......+
T Consensus 150 ~~y~~~~~~~~g~~~~A---~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~ 226 (1157)
T PRK11447 150 VEYWRLVAKLPAQRPEA---INQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIK 226 (1157)
T ss_pred HHHHHHHhhCCccHHHH---HHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHh
Confidence 1112222 233555555 4556666665433 34667788888888888888888777632111 00010011
Q ss_pred ----------------HHhcc--ChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCH
Q 037477 240 ----------------KELRI--YPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDI 301 (639)
Q Consensus 240 ----------------~~~~~--~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 301 (639)
..... ....|...+...... .-.|+... ......+...|++++|...|++..+.. +.+.
T Consensus 227 ~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~-~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~ 303 (1157)
T PRK11447 227 DMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQ-LADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDS 303 (1157)
T ss_pred ccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHh-ccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 11111 112333333333211 11222211 223455667788888888888887763 3367
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC-CHHHHHHHH----------HHHhhcCCCchhHHHHHHHHHHhcCCC
Q 037477 302 DTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKP-SVQDCSLLL----------RSISSINNPDLGLVFRVANKYESLGNS 370 (639)
Q Consensus 302 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~~~~~ll----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (639)
..+..+...|.+.|++++|+..|++..+..-.. ....+..++ .+.......+.+.+...+++......
T Consensus 304 ~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P- 382 (1157)
T PRK11447 304 EALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN- 382 (1157)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-
Confidence 778888888888888888888888877643211 111121111 11122233456667777766666532
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHH------------------------------------
Q 037477 371 LSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQV------------------------------------ 414 (639)
Q Consensus 371 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l------------------------------------ 414 (639)
.+...+..+..++...|++++|++.|++..+.. +.+...+..+
T Consensus 383 ~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~ 461 (1157)
T PRK11447 383 TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQN 461 (1157)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence 344556667778888888888888888877653 2223333222
Q ss_pred ------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037477 415 ------IFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGF 488 (639)
Q Consensus 415 ------i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (639)
...+...|++++|++.|++..+.... +...+..+...|.+.|++++|...++++.+.. +.+...+..+...+
T Consensus 462 ~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l 539 (1157)
T PRK11447 462 DRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYL 539 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 23344567777777777777765432 45566667777777777777777777776643 22333333333334
Q ss_pred HcCCChhHHHHHHHHHHHhC--------------------------------------CCCCCHHHHHHHHHHHHhcCCH
Q 037477 489 LSQKRVNGAYKLLVEMIEKV--------------------------------------RLRPWQATFKTLIEKLLGARRL 530 (639)
Q Consensus 489 ~~~g~~~~A~~~~~~m~~~~--------------------------------------~~~p~~~~~~~li~~~~~~g~~ 530 (639)
...|+.++|...++.+.... ....+...+..+...+.+.|++
T Consensus 540 ~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~ 619 (1157)
T PRK11447 540 SGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDY 619 (1157)
T ss_pred HhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 44455555555444332110 0011222334444455555555
Q ss_pred HHHHHHHHHHHhCCCCCCh-HhH---HHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 531 EEAMNLLRLMKKQNYPPFP-EPF---VQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 531 ~~A~~~~~~m~~~~~~p~~-~~~---~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
++|++.+++..+. .|+. ..+ ..++...|+.++|.+.++.+.+..|.+...+..+..++...|++++|.+++++.
T Consensus 620 ~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 697 (1157)
T PRK11447 620 AAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRL 697 (1157)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 5555555555542 2221 111 122234455555555555555544455555555555555555555555555554
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.86 E-value=9.4e-16 Score=176.08 Aligned_cols=489 Identities=10% Similarity=0.012 Sum_probs=305.0
Q ss_pred cCCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCC--HHHHHHH------------
Q 037477 105 LDNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIE--EETYLSI------------ 170 (639)
Q Consensus 105 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~--~~t~~~l------------ 170 (639)
..++.++|++.++.+.+..+ -++..+..+...+...|+.++|+..++++.+..-... ...|...
T Consensus 159 ~~g~~~~A~~~L~~ll~~~P--~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~ 236 (1157)
T PRK11447 159 LPAQRPEAINQLQRLNADYP--GNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVA 236 (1157)
T ss_pred CCccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHH
Confidence 35788889999998887432 3566777888888888999999999988865421000 0011000
Q ss_pred -HHH-HHhcCchhhHHHHHHHHHHHhhhccchhHH-HHHHHHHhcCCchHHHHHHHhhcc-CcCC-H--HHHHHHHHHhc
Q 037477 171 -LGV-LKKAKKASDLAALNQFHDGMVKEIAMDNVA-KTLVDVVLGSDWDDKIGKKLEDMK-IELS-D--NFVLTVLKELR 243 (639)
Q Consensus 171 -l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~-~~~~-~--~~~~~~l~~~~ 243 (639)
+.. .........+......+.........+... ...-..+...|..+++...+++.- ..+. . ...+..+....
T Consensus 237 ~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~ 316 (1157)
T PRK11447 237 ALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQ 316 (1157)
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 000 111111111111112222221111112211 122344556777777777776652 2221 1 22222223336
Q ss_pred cChHHHHHHHHHHhccCCCCCCHHHHH------------HHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037477 244 IYPVKALGFFRWVGEHSGYKHNTITYN------------GILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQF 311 (639)
Q Consensus 244 ~~~~~A~~~f~~~~~~~~~~p~~~~~~------------~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 311 (639)
++.++|+..|++..+...-.++...|. .....+.+.|++++|.+.|++..+.. +.+...+..+...+
T Consensus 317 g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~ 395 (1157)
T PRK11447 317 GDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVA 395 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 889999999998864332222222222 22345678899999999999998874 44677788888999
Q ss_pred HhcCCHHHHHHHHHHhhcCCCCCC-HHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcC--------CCCChhhHHHHHHH
Q 037477 312 QKFRMMEDAVKLFEFMMDGPYKPS-VQDCSLLLRSISSINNPDLGLVFRVANKYESLG--------NSLSKSVYDGIHRA 382 (639)
Q Consensus 312 ~~~g~~~~a~~l~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~li~~ 382 (639)
...|++++|++.|++..+. .|+ ...+..+...+.. . +.+.+...+..+.... .......+..+...
T Consensus 396 ~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~~-~--~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~ 470 (1157)
T PRK11447 396 MARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYRQ-Q--SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEA 470 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHh-c--CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 9999999999999998865 333 3344444444432 2 2344444443322111 00112234556677
Q ss_pred HHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 037477 383 LTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRA 462 (639)
Q Consensus 383 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a 462 (639)
+...|++++|.+.|++..+.. +-+...+..+...|.+.|++++|...++++.+.... +...+..+...+...|+.++|
T Consensus 471 ~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~A 548 (1157)
T PRK11447 471 LENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAA 548 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHH
Confidence 778888888888888887764 334566677788888888888888888887764322 333333333333444444444
Q ss_pred HHHHHHHHHc---------------------------------------CCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 037477 463 LLCFAKMMEK---------------------------------------NYDADADLLDVLINGFLSQKRVNGAYKLLVE 503 (639)
Q Consensus 463 ~~~~~~m~~~---------------------------------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 503 (639)
...++.+... ..+.+...+..+...+.+.|++++|+..|+.
T Consensus 549 l~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~ 628 (1157)
T PRK11447 549 LAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQR 628 (1157)
T ss_pred HHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444332110 1234556677788899999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHh----HHHHHhhcCCHHHHHHHHHHhhcCCC--
Q 037477 504 MIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEP----FVQYISKFGTVEDASEFLKALSVKEY-- 577 (639)
Q Consensus 504 m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~----~~~ll~~~g~~~~a~~~~~~~~~~~~-- 577 (639)
..+.. ..+...+..+...|...|++++|++.++...+. .|+... +..++...|+.++|.++++++....+
T Consensus 629 al~~~--P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 704 (1157)
T PRK11447 629 VLTRE--PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQ 704 (1157)
T ss_pred HHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccC
Confidence 98752 224678899999999999999999999988763 344332 23344688999999999999987633
Q ss_pred -C---CHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037477 578 -P---SSAAYLQVFESFFNEGRHYEAKDLLYKCP 607 (639)
Q Consensus 578 -~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 607 (639)
+ +...+..+...+...|++++|++.+++..
T Consensus 705 ~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 705 PPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2 33567778999999999999999999874
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=3.8e-18 Score=174.44 Aligned_cols=309 Identities=18% Similarity=0.159 Sum_probs=169.3
Q ss_pred cCCHHHHHHHHHHhccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC---HHHHH
Q 037477 229 ELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMD---IDTYI 305 (639)
Q Consensus 229 ~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~ 305 (639)
.........+.....+++++|+..|+.+.+.. +.+..++..+...+.+.|++++|..+++.+...+..++ ..++.
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 111 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQ 111 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 34444444444555688899999999996432 33567889999999999999999999999887642222 35678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCCh----hhHHHHHH
Q 037477 306 KISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSK----SVYDGIHR 381 (639)
Q Consensus 306 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~li~ 381 (639)
.+...|.+.|++++|+.+|+++.+.. .++..++..+...+...+ +.+.+...+..+.+.+..+.. ..+..+..
T Consensus 112 ~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~ 188 (389)
T PRK11788 112 ELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEK--DWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ 188 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhc--hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 88999999999999999999987641 223444444444444433 233444444444433222111 12333444
Q ss_pred HHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 037477 382 ALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDR 461 (639)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~ 461 (639)
.+.+.|++++|.+.|+++.+.. +.+...+..+...|.+.|++++|.+.|+++.+.+......+++.++.+|...|++++
T Consensus 189 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 267 (389)
T PRK11788 189 QALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAE 267 (389)
T ss_pred HHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHH
Confidence 4445555555555555554432 222334444445555555555555555555443211112344445555555555555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHH
Q 037477 462 ALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLG---ARRLEEAMNLLR 538 (639)
Q Consensus 462 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~ 538 (639)
|...++++.+. .|+...+..+...+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.+++..+++
T Consensus 268 A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~ 342 (389)
T PRK11788 268 GLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRGFHRLLDYHLAEAEEGRAKESLLLLR 342 (389)
T ss_pred HHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHHHHHHHHHhhhccCCccchhHHHHHH
Confidence 55555555443 233333444455555555555555555544432 3444445444444432 234455555555
Q ss_pred HHHhCCCCCC
Q 037477 539 LMKKQNYPPF 548 (639)
Q Consensus 539 ~m~~~~~~p~ 548 (639)
+|.+.++.|+
T Consensus 343 ~~~~~~~~~~ 352 (389)
T PRK11788 343 DLVGEQLKRK 352 (389)
T ss_pred HHHHHHHhCC
Confidence 5554444433
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=1.7e-17 Score=169.64 Aligned_cols=320 Identities=12% Similarity=0.076 Sum_probs=243.8
Q ss_pred HHHHhhhCCCCCHHHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCC
Q 037477 83 ENKLEELSPKLTHESVVYVLRKLDNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYI 162 (639)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~ 162 (639)
+...++....+.......+.....|+++.|+..|..+.+.. +.+..+|..+...+...|++++|..+++.+...+..+
T Consensus 25 ~~~~~~~~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 102 (389)
T PRK11788 25 RQDQQKESNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLT 102 (389)
T ss_pred hhhhhhhhhhccHHHHHHHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCC
Confidence 33455566667777666666556799999999999998732 2356688999999999999999999999998764222
Q ss_pred CH---HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCchHHHHHHHhhccCcCCHHHHHHHH
Q 037477 163 EE---ETYLSILGVLKKAKKASDLAALNQFHDGMVKEIAMDNVAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVL 239 (639)
Q Consensus 163 ~~---~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 239 (639)
+. .++..+...|...
T Consensus 103 ~~~~~~~~~~La~~~~~~-------------------------------------------------------------- 120 (389)
T PRK11788 103 REQRLLALQELGQDYLKA-------------------------------------------------------------- 120 (389)
T ss_pred HHHHHHHHHHHHHHHHHC--------------------------------------------------------------
Confidence 21 2334444444443
Q ss_pred HHhccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcC
Q 037477 240 KELRIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMD----IDTYIKISRQFQKFR 315 (639)
Q Consensus 240 ~~~~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g 315 (639)
++.++|+.+|+.+.+. -+++..+++.++..+.+.|++++|.+.++.+.+.+..+. ...|..+...+.+.|
T Consensus 121 ----g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 194 (389)
T PRK11788 121 ----GLLDRAEELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG 194 (389)
T ss_pred ----CCHHHHHHHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC
Confidence 4455677777777532 245678899999999999999999999999988653332 224566777888999
Q ss_pred CHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHH
Q 037477 316 MMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKM 395 (639)
Q Consensus 316 ~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 395 (639)
++++|...|+++.+. .|+ +...+..+...|.+.|++++|.++
T Consensus 195 ~~~~A~~~~~~al~~--~p~------------------------------------~~~~~~~la~~~~~~g~~~~A~~~ 236 (389)
T PRK11788 195 DLDAARALLKKALAA--DPQ------------------------------------CVRASILLGDLALAQGDYAAAIEA 236 (389)
T ss_pred CHHHHHHHHHHHHhH--CcC------------------------------------CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999998753 122 122355577889999999999999
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 037477 396 MKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYD 475 (639)
Q Consensus 396 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 475 (639)
|+++.+.+......+++.++.+|.+.|++++|...++++.+.. |+...+..++..+.+.|++++|..+++++.+. .
T Consensus 237 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~ 312 (389)
T PRK11788 237 LERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--H 312 (389)
T ss_pred HHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--C
Confidence 9999876422224678889999999999999999999998864 66677788999999999999999999999876 6
Q ss_pred CCHHHHHHHHHHHHc---CCChhHHHHHHHHHHHhCCCCCCHH
Q 037477 476 ADADLLDVLINGFLS---QKRVNGAYKLLVEMIEKVRLRPWQA 515 (639)
Q Consensus 476 ~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~p~~~ 515 (639)
|+..+++.++..+.. .|+.+++..+|+.|.++ ++.|+..
T Consensus 313 P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~-~~~~~p~ 354 (389)
T PRK11788 313 PSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE-QLKRKPR 354 (389)
T ss_pred cCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH-HHhCCCC
Confidence 888899988887764 56899999999999886 6666544
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.80 E-value=1.6e-15 Score=163.33 Aligned_cols=355 Identities=12% Similarity=0.001 Sum_probs=267.7
Q ss_pred ccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037477 243 RIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVK 322 (639)
Q Consensus 243 ~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 322 (639)
.+++++|+..|+...+ +.|+...|..+..+|.+.|++++|++.++...+.. +.+...|..+..+|...|++++|+.
T Consensus 140 ~~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~ 215 (615)
T TIGR00990 140 NKDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALL 215 (615)
T ss_pred cCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4888999999998753 46788889999999999999999999999988774 4467788889999999999999987
Q ss_pred HHHHhhcCC-CC---------------------------C----CHHHHHHHHHHHh---------h-------------
Q 037477 323 LFEFMMDGP-YK---------------------------P----SVQDCSLLLRSIS---------S------------- 348 (639)
Q Consensus 323 l~~~m~~~g-~~---------------------------p----~~~~~~~ll~~~~---------~------------- 348 (639)
-|......+ .. | ........+..+. .
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (615)
T TIGR00990 216 DLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQL 295 (615)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchH
Confidence 665443221 00 0 0000000000000 0
Q ss_pred ---------cCCCchhHHHHHHHHHHhcC-CCC-ChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 037477 349 ---------INNPDLGLVFRVANKYESLG-NSL-SKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFG 417 (639)
Q Consensus 349 ---------~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 417 (639)
......+.+...++.....+ ..| ....+..+...+...|++++|...|++..+.. +.+...|..+...
T Consensus 296 ~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~ 374 (615)
T TIGR00990 296 QLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASM 374 (615)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHH
Confidence 00012233444455444443 222 34567888888899999999999999998763 2346688888899
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHH
Q 037477 418 LCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGA 497 (639)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 497 (639)
+...|++++|...|++..+.... +...|..+...+...|++++|...|++.++.. +.+...+..+...+.+.|++++|
T Consensus 375 ~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA 452 (615)
T TIGR00990 375 NLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASS 452 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999876532 57889999999999999999999999999875 34577788888899999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh--Hh----HH---HHHhhcCCHHHHHHH
Q 037477 498 YKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFP--EP----FV---QYISKFGTVEDASEF 568 (639)
Q Consensus 498 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~----~~---~ll~~~g~~~~a~~~ 568 (639)
+..|++..+... -+...|+.+...+...|++++|++.|++..+.....+. .. +. .++...|++++|..+
T Consensus 453 ~~~~~~al~~~P--~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~ 530 (615)
T TIGR00990 453 MATFRRCKKNFP--EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENL 530 (615)
T ss_pred HHHHHHHHHhCC--CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 999999887532 23568888899999999999999999998874321111 11 11 112346999999999
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 569 LKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 569 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
+++.....|.+...+..+..+|.+.|++++|++.|++.
T Consensus 531 ~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 531 CEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99998888888889999999999999999999999885
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.80 E-value=2.1e-13 Score=149.96 Aligned_cols=471 Identities=10% Similarity=-0.016 Sum_probs=312.5
Q ss_pred CCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCC-HHHHHHHHHH--------HHh
Q 037477 106 DNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIE-EETYLSILGV--------LKK 176 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~-~~t~~~ll~~--------~~~ 176 (639)
.|++++|+..++...+. .|+-..|..++..+ ++.++|..+++++.+.. |+ ..++..+... |.+
T Consensus 91 ~g~~~~A~~~~~kAv~l---dP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q 162 (987)
T PRK09782 91 FGHDDRARLLLEDQLKR---HPGDARLERSLAAI---PVEVKSVTTVEELLAQQ--KACDAVPTLRCRSEVGQNALRLAQ 162 (987)
T ss_pred CCCHHHHHHHHHHHHhc---CcccHHHHHHHHHh---ccChhHHHHHHHHHHhC--CCChhHHHHHHHHhhccchhhhhh
Confidence 68889999998888872 24444444434333 78888889999988764 33 3444333333 444
Q ss_pred cCchhhHHHHHHHHHHHhhhccchhHHHHH-HHHHhcCCchHHHHHHHhhcc--CcCCHHHH---HHHHHHhccChHHHH
Q 037477 177 AKKASDLAALNQFHDGMVKEIAMDNVAKTL-VDVVLGSDWDDKIGKKLEDMK--IELSDNFV---LTVLKELRIYPVKAL 250 (639)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~l~~~~~~~~~A~ 250 (639)
. +++..... .........+.+.... ..+|.+.++...+...+.++. .+.+.... -.++....+. +.+.
T Consensus 163 ~---eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~ 236 (987)
T PRK09782 163 L---PVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLL 236 (987)
T ss_pred H---HHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHH
Confidence 4 45544444 3333322233444444 888888888887777777764 22333222 2233331122 6677
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCC-CCHHHHHHH----------------------
Q 037477 251 GFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYE-MDIDTYIKI---------------------- 307 (639)
Q Consensus 251 ~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~l---------------------- 307 (639)
.+++. .++-|...+..+...|.+.|+.++|.++++++...-.. |...+|--+
T Consensus 237 al~~~-----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~ 311 (987)
T PRK09782 237 ALQSQ-----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADN 311 (987)
T ss_pred HHhch-----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHH
Confidence 77543 23468888999999999999999999998887654211 222222110
Q ss_pred --------HHH---------------------------------------------------------------HHhcCC
Q 037477 308 --------SRQ---------------------------------------------------------------FQKFRM 316 (639)
Q Consensus 308 --------i~~---------------------------------------------------------------~~~~g~ 316 (639)
+.- ..+.|+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~ 391 (987)
T PRK09782 312 RQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQ 391 (987)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccc
Confidence 111 233455
Q ss_pred HHHHHHHHHHhhcC--CCCCCHHHHHHHHHHHhhcCCCch-hHHHHH----------------------HHHHHh-cCC-
Q 037477 317 MEDAVKLFEFMMDG--PYKPSVQDCSLLLRSISSINNPDL-GLVFRV----------------------ANKYES-LGN- 369 (639)
Q Consensus 317 ~~~a~~l~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~-~~~~~~----------------------~~~~~~-~~~- 369 (639)
.++|.++|+..... +-.++.....-++..+.+.+..+. ..+..+ ...... .+.
T Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~ 471 (987)
T PRK09782 392 SREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDM 471 (987)
T ss_pred HHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccC
Confidence 66666666665541 122233344455566655443111 111111 111111 122
Q ss_pred CC--ChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 037477 370 SL--SKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWT 447 (639)
Q Consensus 370 ~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 447 (639)
+. +...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|...|+++... .|+...+.
T Consensus 472 p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~ 546 (987)
T PRK09782 472 SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLL 546 (987)
T ss_pred CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHH
Confidence 22 45667777777776 8898999988887766 466554444455556899999999999998654 34555677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 037477 448 ILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGA 527 (639)
Q Consensus 448 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 527 (639)
.+...+.+.|+.++|...+++.++.+ +.+...+..+.......|++++|...+++..+. .|+...|..+...+.+.
T Consensus 547 ~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~l 622 (987)
T PRK09782 547 AAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQR 622 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHC
Confidence 77888899999999999999999875 333344444444555679999999999999865 56788899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCChHhH----HHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037477 528 RRLEEAMNLLRLMKKQNYPPFPEPF----VQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLL 603 (639)
Q Consensus 528 g~~~~A~~~~~~m~~~~~~p~~~~~----~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 603 (639)
|+.++|+..+++..+ ..|+.... ...+...|+.++|+..+++..+..|.++..+..+..+|...|++++|...+
T Consensus 623 G~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l 700 (987)
T PRK09782 623 HNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYA 700 (987)
T ss_pred CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999988 44665433 334568899999999999999999999999999999999999999999999
Q ss_pred hhC
Q 037477 604 YKC 606 (639)
Q Consensus 604 ~~m 606 (639)
++.
T Consensus 701 ~~A 703 (987)
T PRK09782 701 RLV 703 (987)
T ss_pred HHH
Confidence 985
No 15
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=1.5e-14 Score=135.22 Aligned_cols=251 Identities=18% Similarity=0.234 Sum_probs=157.1
Q ss_pred HHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHHHHHH
Q 037477 110 EKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAALNQF 189 (639)
Q Consensus 110 ~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~~~ 189 (639)
+.|.-+|+..++ +..+|..||.++++.-..+.|.++|++-.+...+.+..+||.+|.+-.-..
T Consensus 194 ~vAdL~~E~~PK------T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----------- 256 (625)
T KOG4422|consen 194 AVADLLFETLPK------TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----------- 256 (625)
T ss_pred cHHHHHHhhcCC------CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc-----------
Confidence 334555555543 677888888888888888888888888887777788888888876644331
Q ss_pred HHHHhhhccchhHHHHHHHHHhcCCchHHHHHHHhhccCcCCHHHHHHHHHHhccChHHHHHHHHHHhccCCCCCCHHHH
Q 037477 190 HDGMVKEIAMDNVAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKHNTITY 269 (639)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p~~~~~ 269 (639)
..++..+|. ...+.||..|+
T Consensus 257 -----------------------------------------------------------~K~Lv~EMi-sqkm~Pnl~Tf 276 (625)
T KOG4422|consen 257 -----------------------------------------------------------GKKLVAEMI-SQKMTPNLFTF 276 (625)
T ss_pred -----------------------------------------------------------cHHHHHHHH-HhhcCCchHhH
Confidence 012222232 23458999999
Q ss_pred HHHHHHHHcCCChhH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHhhc----CCCCC----CH
Q 037477 270 NGILRVLARHESVRD----FWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMED-AVKLFEFMMD----GPYKP----SV 336 (639)
Q Consensus 270 ~~li~~~~~~g~~~~----a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-a~~l~~~m~~----~g~~p----~~ 336 (639)
|+++.+..+.|+++. |.+++.+|++.|++|...+|..+|..+++.++..+ +..++.+++. ..++| |.
T Consensus 277 NalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~ 356 (625)
T KOG4422|consen 277 NALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDN 356 (625)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchh
Confidence 999999999998765 56788889999999999999999998888887644 4444444432 23333 23
Q ss_pred HHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCC----CCC---hhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHH
Q 037477 337 QDCSLLLRSISSINNPDLGLVFRVANKYESLGN----SLS---KSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNI 409 (639)
Q Consensus 337 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 409 (639)
..+...|+.|.... |...+.++...+..... .++ ..-|..+....|.....+.-...|+.|.-.-+-|+..
T Consensus 357 ~FF~~AM~Ic~~l~--d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~ 434 (625)
T KOG4422|consen 357 KFFQSAMSICSSLR--DLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQ 434 (625)
T ss_pred HHHHHHHHHHHHhh--hHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCch
Confidence 34445555555433 44445454444433211 111 1234445555566666666666666666555555666
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 037477 410 TYSQVIFGLCKAGRFEDACNVLDEMEENGC 439 (639)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 439 (639)
+...++++.--.|+++-..+++..+...|.
T Consensus 435 ~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 435 TMIHLLRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred hHHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence 666666666666666666666666665543
No 16
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=6.5e-14 Score=131.06 Aligned_cols=431 Identities=14% Similarity=0.155 Sum_probs=289.1
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhhccchhHHHHHHHH
Q 037477 130 TVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAALNQFHDGMVKEIAMDNVAKTLVDV 209 (639)
Q Consensus 130 ~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 209 (639)
.+=|.|+. +...|.++.+.-+|+.|...|+..++..-..|++.-+-.+.-+-.-.-.+.|-.+.+.+.... -
T Consensus 117 ~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~-------~ 188 (625)
T KOG4422|consen 117 ETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDST-------S 188 (625)
T ss_pred cchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccc-------c
Confidence 34455554 445688899999999999999998888877777764443321111111122333332221100 0
Q ss_pred HhcCCchHHHHHHHhhcc-CcCCHHHHHHHHHHhccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHH
Q 037477 210 VLGSDWDDKIGKKLEDMK-IELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNV 288 (639)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 288 (639)
-.+.|.. +.-.++..+ .+-++..++..+++. ...+.|.+++++-.. ...+.+..+||.+|.+-.-..+ .++
T Consensus 189 sWK~G~v--AdL~~E~~PKT~et~s~mI~Gl~K~-~~~ERA~~L~kE~~~-~k~kv~~~aFN~lI~~~S~~~~----K~L 260 (625)
T KOG4422|consen 189 SWKSGAV--ADLLFETLPKTDETVSIMIAGLCKF-SSLERARELYKEHRA-AKGKVYREAFNGLIGASSYSVG----KKL 260 (625)
T ss_pred ccccccH--HHHHHhhcCCCchhHHHHHHHHHHH-HhHHHHHHHHHHHHH-hhheeeHHhhhhhhhHHHhhcc----HHH
Confidence 0111222 223334443 345778888888876 567789999998854 4447899999999976543322 889
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCch---hHHHHHH
Q 037477 289 VEEMKKEGYEMDIDTYIKISRQFQKFRMMED----AVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDL---GLVFRVA 361 (639)
Q Consensus 289 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~----a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~---~~~~~~~ 361 (639)
+.+|....+.||..|+|+++.+.++.|+++. |++++.+|++.|+.|...+|..+|...++-+.+.. ....++.
T Consensus 261 v~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~ 340 (625)
T KOG4422|consen 261 VAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQ 340 (625)
T ss_pred HHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHH
Confidence 9999999999999999999999999998765 56788999999999999999999998888776532 2233344
Q ss_pred HHHHhcCCCC----ChhhHHHHHHHHHccCChhHHHHHHHHHHHCC----CCCC---HHhHHHHHHHHHhcCCHHHHHHH
Q 037477 362 NKYESLGNSL----SKSVYDGIHRALTKLGRFDEAEKMMKAMKNAG----FEPD---NITYSQVIFGLCKAGRFEDACNV 430 (639)
Q Consensus 362 ~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~~~---~~~~~~li~~~~~~g~~~~A~~~ 430 (639)
..+......| |...|...++.|.+..+.+.|.++..-+.... +.|+ ..-|..+....|+....+.-...
T Consensus 341 N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~ 420 (625)
T KOG4422|consen 341 NSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKW 420 (625)
T ss_pred HhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333332 44567788888999999999999877665321 2233 23466788888999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-Ch--h-----------H
Q 037477 431 LDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQK-RV--N-----------G 496 (639)
Q Consensus 431 ~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~--~-----------~ 496 (639)
|+.|.-+-.-|+..+...++++..-.|.++-.-++|..++..|...+...-.-++..+++.. +. . -
T Consensus 421 Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~ 500 (625)
T KOG4422|consen 421 YEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKC 500 (625)
T ss_pred HHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHH
Confidence 99999887789999999999999999999999999999999886666665555555555544 11 0 0
Q ss_pred HHHHHH-------HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CChHhHH---HHH---hhcCCH
Q 037477 497 AYKLLV-------EMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYP-PFPEPFV---QYI---SKFGTV 562 (639)
Q Consensus 497 A~~~~~-------~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~---~ll---~~~g~~ 562 (639)
|..+++ +|.+ ..-.....+++.-.+.+.|..++|.+++..+.+.+.+ |.....+ .++ ....+.
T Consensus 501 aad~~e~~e~~~~R~r~---~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~sp 577 (625)
T KOG4422|consen 501 AADIKEAYESQPIRQRA---QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSP 577 (625)
T ss_pred HHHHHHHHHhhHHHHHh---ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCH
Confidence 111111 1221 2223346677777788888888888888888654433 3222333 333 244566
Q ss_pred HHHHHHHHHhhcCCCCC
Q 037477 563 EDASEFLKALSVKEYPS 579 (639)
Q Consensus 563 ~~a~~~~~~~~~~~~~~ 579 (639)
..|...++-+.....+.
T Consensus 578 sqA~~~lQ~a~~~n~~~ 594 (625)
T KOG4422|consen 578 SQAIEVLQLASAFNLPI 594 (625)
T ss_pred HHHHHHHHHHHHcCchh
Confidence 66777777665543333
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.76 E-value=9e-14 Score=149.91 Aligned_cols=415 Identities=14% Similarity=0.009 Sum_probs=220.0
Q ss_pred CCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHH
Q 037477 106 DNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAA 185 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~ 185 (639)
.|+++.|+..|+.+.+ ..|+...|..+..+|.+.|++++|+..++...+.. +-+...|..+-.++...|+++++..
T Consensus 140 ~~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~ 215 (615)
T TIGR00990 140 NKDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALL 215 (615)
T ss_pred cCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 5899999999999887 44788899999999999999999999999988764 2355678888889999999888754
Q ss_pred HHHHHHHHhhh-ccchhHHHHHHHHHhcCCchHHHHHHHhhccC-cCCHHHHHHHHHHhccChHHHHHHHHHHhccCCCC
Q 037477 186 LNQFHDGMVKE-IAMDNVAKTLVDVVLGSDWDDKIGKKLEDMKI-ELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYK 263 (639)
Q Consensus 186 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~ 263 (639)
-. ...... +..+.....++.-+........+...+...+. ...+..+...+...+.. .+..-+... ....
T Consensus 216 ~~---~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~ 287 (615)
T TIGR00990 216 DL---TASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPK--PRPAGLEDS---NELD 287 (615)
T ss_pred HH---HHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCC--cchhhhhcc---cccc
Confidence 32 222211 11111111111111000011122222222221 12222222222211100 011111100 0011
Q ss_pred CCH-HHHHHHHHH---HHcCCChhHHHHHHHHHHHCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHH
Q 037477 264 HNT-ITYNGILRV---LARHESVRDFWNVVEEMKKEG-Y-EMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQ 337 (639)
Q Consensus 264 p~~-~~~~~li~~---~~~~g~~~~a~~~~~~m~~~g-~-~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ 337 (639)
++. ..+..+... ....+++++|.+.|+...+.+ . +.....|+.+...+...|++++|+..|+...+. .|+.
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~- 364 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRV- 364 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCc-
Confidence 110 001111100 122356777777777777654 2 223456677777777777788887777776543 2221
Q ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 037477 338 DCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFG 417 (639)
Q Consensus 338 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 417 (639)
...|..+...+...|++++|...|+...+.. +.+...|..+...
T Consensus 365 -----------------------------------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~ 408 (615)
T TIGR00990 365 -----------------------------------TQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQL 408 (615)
T ss_pred -----------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 1123334455556666666666666665543 2345556666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHH
Q 037477 418 LCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGA 497 (639)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 497 (639)
+...|++++|...|++..+.... +...+..+...+.+.|++++|...+++.++.. +-+...++.+...+...|++++|
T Consensus 409 ~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A 486 (615)
T TIGR00990 409 HFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEA 486 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHH
Confidence 66666666666666666654321 34455556666666666666666666665542 23455566666666666666666
Q ss_pred HHHHHHHHHhCCC-C---CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH----hHHHHHhhcCCHHHHHHH
Q 037477 498 YKLLVEMIEKVRL-R---PWQ-ATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPE----PFVQYISKFGTVEDASEF 568 (639)
Q Consensus 498 ~~~~~~m~~~~~~-~---p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~g~~~~a~~~ 568 (639)
...|+...+...- . .+. ..++.....+...|++++|.+++++..+.. |+.. .+..++...|++++|..+
T Consensus 487 ~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~--p~~~~a~~~la~~~~~~g~~~eAi~~ 564 (615)
T TIGR00990 487 IEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID--PECDIAVATMAQLLLQQGDVDEALKL 564 (615)
T ss_pred HHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 6666665543110 0 010 111222222333466666666666655432 3322 223333456666666666
Q ss_pred HHHhhcC
Q 037477 569 LKALSVK 575 (639)
Q Consensus 569 ~~~~~~~ 575 (639)
|++..+.
T Consensus 565 ~e~A~~l 571 (615)
T TIGR00990 565 FERAAEL 571 (615)
T ss_pred HHHHHHH
Confidence 6666554
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.76 E-value=8.1e-14 Score=153.03 Aligned_cols=418 Identities=13% Similarity=0.072 Sum_probs=251.9
Q ss_pred CCCCHHHHHHHHHh--cCCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHH
Q 037477 91 PKLTHESVVYVLRK--LDNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYL 168 (639)
Q Consensus 91 ~~~~~~~~~~~l~~--~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~ 168 (639)
..+++..|..-+.- ..|+.++|++++....... ..+...+..+...+.+.|++++|..+|++..+.. +.+...+.
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~ 87 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQR 87 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 45556655554332 3789999999999887511 2455568889999999999999999999977653 23344555
Q ss_pred HHHHHHHhcCchhhHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCchHHHHHHHhhccCcCCHHHHHHHHHHhccChHH
Q 037477 169 SILGVLKKAKKASDLAALNQFHDGMVKEIAMDNVAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVK 248 (639)
Q Consensus 169 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 248 (639)
.+...+...|+. ++
T Consensus 88 ~la~~l~~~g~~------------------------------------------------------------------~e 101 (765)
T PRK10049 88 GLILTLADAGQY------------------------------------------------------------------DE 101 (765)
T ss_pred HHHHHHHHCCCH------------------------------------------------------------------HH
Confidence 555555555444 44
Q ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 037477 249 ALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMM 328 (639)
Q Consensus 249 A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 328 (639)
|+..++...+.. +.+.. +..+...+...|+.++|+..++++.+.. +.+...+..+..++...+..++|++.++...
T Consensus 102 A~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~ 177 (765)
T PRK10049 102 ALVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDAN 177 (765)
T ss_pred HHHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCC
Confidence 555555553321 33555 8888889999999999999999999874 3466667778888889999999999998776
Q ss_pred cCCCCCCHHH------HHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCh---hHHHHHHHHH
Q 037477 329 DGPYKPSVQD------CSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRF---DEAEKMMKAM 399 (639)
Q Consensus 329 ~~g~~p~~~~------~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m 399 (639)
. .|+... ...+++.. +.......+++ ++|++.++.+
T Consensus 178 ~---~p~~~~~l~~~~~~~~~r~~--------------------------------~~~~~~~~~r~~~ad~Al~~~~~l 222 (765)
T PRK10049 178 L---TPAEKRDLEADAAAELVRLS--------------------------------FMPTRSEKERYAIADRALAQYDAL 222 (765)
T ss_pred C---CHHHHHHHHHHHHHHHHHhh--------------------------------cccccChhHHHHHHHHHHHHHHHH
Confidence 4 333100 00000000 00011111223 5566666666
Q ss_pred HHC-CCCCCHH-hHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 037477 400 KNA-GFEPDNI-TYS----QVIFGLCKAGRFEDACNVLDEMEENGCI-PDIKTWTILIQGHCAANEVDRALLCFAKMMEK 472 (639)
Q Consensus 400 ~~~-g~~~~~~-~~~----~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 472 (639)
.+. ...|+.. .+. ..+..+...|++++|+..|+++.+.+.. |+. .-..+...|...|++++|...|+++.+.
T Consensus 223 l~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~ 301 (765)
T PRK10049 223 EALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYH 301 (765)
T ss_pred HhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 543 1122221 111 1123344567777777777777665422 221 1122455677777777777777776654
Q ss_pred CCCC---CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCC----------CCCC---HHHHHHHHHHHHhcCCHHHHHHH
Q 037477 473 NYDA---DADLLDVLINGFLSQKRVNGAYKLLVEMIEKVR----------LRPW---QATFKTLIEKLLGARRLEEAMNL 536 (639)
Q Consensus 473 g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~ 536 (639)
.... .......+..++...|++++|..+++.+.+... -.|+ ...+..+...+...|++++|+++
T Consensus 302 ~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~ 381 (765)
T PRK10049 302 PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR 381 (765)
T ss_pred CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2111 123444555566777777777777777765411 1122 12344555666677777777777
Q ss_pred HHHHHhCCCCCChHhH----HHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCccccC
Q 037477 537 LRLMKKQNYPPFPEPF----VQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHHIRQ 612 (639)
Q Consensus 537 ~~~m~~~~~~p~~~~~----~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 612 (639)
++++... .|+...+ ..++...|+.++|++.+++.....|.+...+...+..+.+.|++++|..+++++....+.
T Consensus 382 l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 382 ARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 7777653 3443222 223346677777777777777777777777777777777777777777777776444444
Q ss_pred ChhHHHh
Q 037477 613 DSKISLL 619 (639)
Q Consensus 613 ~~~~~~l 619 (639)
++.+..+
T Consensus 460 ~~~~~~~ 466 (765)
T PRK10049 460 DPGVQRL 466 (765)
T ss_pred CHHHHHH
Confidence 4443333
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.75 E-value=1.5e-14 Score=155.41 Aligned_cols=319 Identities=10% Similarity=0.047 Sum_probs=216.1
Q ss_pred ccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037477 243 RIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVK 322 (639)
Q Consensus 243 ~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 322 (639)
.++.++|+.+++.+.... +-+...+..++..+...|++++|...++++.+.. +.+...+..+...+...|++++|+.
T Consensus 55 ~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~ 131 (656)
T PRK15174 55 KDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVAD 131 (656)
T ss_pred cCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHH
Confidence 477778888887775332 2244455556666777888888888888888764 4456677888888888888888888
Q ss_pred HHHHhhcCCCCCC-HHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 037477 323 LFEFMMDGPYKPS-VQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKN 401 (639)
Q Consensus 323 l~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 401 (639)
.+++..+. .|+ ...+..+...+...+ +.+.+...+..+......+. ..+..+ ..+...|++++|...++.+.+
T Consensus 132 ~l~~Al~l--~P~~~~a~~~la~~l~~~g--~~~eA~~~~~~~~~~~P~~~-~a~~~~-~~l~~~g~~~eA~~~~~~~l~ 205 (656)
T PRK15174 132 LAEQAWLA--FSGNSQIFALHLRTLVLMD--KELQAISLARTQAQEVPPRG-DMIATC-LSFLNKSRLPEDHDLARALLP 205 (656)
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCC--ChHHHHHHHHHHHHhCCCCH-HHHHHH-HHHHHcCCHHHHHHHHHHHHh
Confidence 88888764 343 344455555555544 34455555554443332222 223223 346777888888888888766
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHcCCCCC
Q 037477 402 AGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDR----ALLCFAKMMEKNYDAD 477 (639)
Q Consensus 402 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~----a~~~~~~m~~~g~~~~ 477 (639)
....++...+..+...+...|++++|...+++..+.... +...+..+...+...|++++ |...+++..+.. +.+
T Consensus 206 ~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~ 283 (656)
T PRK15174 206 FFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDN 283 (656)
T ss_pred cCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCC
Confidence 543334444555567778888888888888888776533 56677778888888888875 788888887764 335
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhH----
Q 037477 478 ADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW-QATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPF---- 552 (639)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~---- 552 (639)
...+..+...+...|++++|...+++..+. .|+ ...+..+..++.+.|++++|++.++.+.+.. |+...+
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~ 358 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYA 358 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHH
Confidence 667778888888888888888888887765 333 4456667777888888888888888877642 433221
Q ss_pred HHHHhhcCCHHHHHHHHHHhhcCCC
Q 037477 553 VQYISKFGTVEDASEFLKALSVKEY 577 (639)
Q Consensus 553 ~~ll~~~g~~~~a~~~~~~~~~~~~ 577 (639)
..++...|+.++|...|++..+..|
T Consensus 359 a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 359 AAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 2335677888888888888777643
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.75 E-value=1.2e-13 Score=148.35 Aligned_cols=253 Identities=10% Similarity=0.026 Sum_probs=180.0
Q ss_pred cChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037477 244 IYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKL 323 (639)
Q Consensus 244 ~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l 323 (639)
++.++|+..|+...+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|...
T Consensus 124 g~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 124 KQYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred CCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHH
Confidence 55667777777775321 2345667777777777788888877777766553 2233333333 336677777777777
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCC
Q 037477 324 FEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAG 403 (639)
Q Consensus 324 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 403 (639)
++.+.+..-. .+...+..+..++...|++++|...++...+..
T Consensus 200 ~~~~l~~~~~-------------------------------------~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~ 242 (656)
T PRK15174 200 ARALLPFFAL-------------------------------------ERQESAGLAVDTLCAVGKYQEAIQTGESALARG 242 (656)
T ss_pred HHHHHhcCCC-------------------------------------cchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 7776543111 111223334567778899999999999988765
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 037477 404 FEPDNITYSQVIFGLCKAGRFED----ACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADAD 479 (639)
Q Consensus 404 ~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 479 (639)
+.+...+..+...|...|++++ |...|++..+.... +...+..+...+...|++++|...+++..+.. +.+..
T Consensus 243 -p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~ 319 (656)
T PRK15174 243 -LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPY 319 (656)
T ss_pred -CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 4456777888888999999885 78889888876432 56788888899999999999999999988864 33556
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 037477 480 LLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQA-TFKTLIEKLLGARRLEEAMNLLRLMKKQ 543 (639)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 543 (639)
.+..+..+|.+.|++++|...|+.+.+. .|+.. .+..+..++...|+.++|.+.|+...+.
T Consensus 320 a~~~La~~l~~~G~~~eA~~~l~~al~~---~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 320 VRAMYARALRQVGQYTAASDEFVQLARE---KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 6777888899999999999999988765 34432 3334456788899999999999988764
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.74 E-value=5.1e-12 Score=139.17 Aligned_cols=493 Identities=11% Similarity=0.008 Sum_probs=310.4
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 037477 95 HESVVYVLRKLDNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVL 174 (639)
Q Consensus 95 ~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~ 174 (639)
+......+....|++++|+..|+.+.+..+ -+..++..|...|...|+.++|+..+++..+.. |+...|..++..+
T Consensus 46 ~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP--~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i 121 (987)
T PRK09782 46 PRLDKALKAQKNNDEATAIREFEYIHQQVP--DNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI 121 (987)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh
Confidence 334444444446999999999999988432 346788999999999999999999999998874 6656665555444
Q ss_pred HhcCchhhHHHHHHHHHHHhhhccchh-HHHHHHHH--------HhcCCchHHHHHHHhhccCcCCH---HHHHHHHHHh
Q 037477 175 KKAKKASDLAALNQFHDGMVKEIAMDN-VAKTLVDV--------VLGSDWDDKIGKKLEDMKIELSD---NFVLTVLKEL 242 (639)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~--------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~ 242 (639)
++.+.+ ..+++.+....+... +...+... |.+.+....+.. .......... .....-+...
T Consensus 122 ---~~~~kA---~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~ 194 (987)
T PRK09782 122 ---PVEVKS---VTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIY 194 (987)
T ss_pred ---ccChhH---HHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHH
Confidence 544544 366778877755533 55555554 665544444444 2222222121 2221122233
Q ss_pred ccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHc-CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037477 243 RIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLAR-HESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAV 321 (639)
Q Consensus 243 ~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 321 (639)
.+++++|++.+..+.+.. +.+..-...|-..|.. .++ +++..+++. .++-+...+..+...|.+.|+.++|.
T Consensus 195 l~dw~~Ai~lL~~L~k~~--pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~ 267 (987)
T PRK09782 195 LKQWSQADTLYNEARQQN--TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQ 267 (987)
T ss_pred HhCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHH
Confidence 588899999999997543 3345556667777877 466 888888553 33358999999999999999999999
Q ss_pred HHHHHhhcCCCC-CCHHHHHHHHHHHhhc------------------------------CC-------------------
Q 037477 322 KLFEFMMDGPYK-PSVQDCSLLLRSISSI------------------------------NN------------------- 351 (639)
Q Consensus 322 ~l~~~m~~~g~~-p~~~~~~~ll~~~~~~------------------------------~~------------------- 351 (639)
++++++...-.. |+..++--++.-+... +.
T Consensus 268 ~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (987)
T PRK09782 268 HYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEE 347 (987)
T ss_pred HHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHH
Confidence 999998654222 4433333332221111 00
Q ss_pred --------CchhHHHHHHHHHHhc-C-----------------------------------CCCChhhHHHHHHHHHccC
Q 037477 352 --------PDLGLVFRVANKYESL-G-----------------------------------NSLSKSVYDGIHRALTKLG 387 (639)
Q Consensus 352 --------~~~~~~~~~~~~~~~~-~-----------------------------------~~~~~~~~~~li~~~~~~g 387 (639)
+...++...+..+-+. . ...+......++..|.+.+
T Consensus 348 r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 427 (987)
T PRK09782 348 RYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHP 427 (987)
T ss_pred HHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCC
Confidence 0000111111111111 0 0111222334445555444
Q ss_pred C---hhHHHHH----------------------HHHHHHC-CC-CC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037477 388 R---FDEAEKM----------------------MKAMKNA-GF-EP--DNITYSQVIFGLCKAGRFEDACNVLDEMEENG 438 (639)
Q Consensus 388 ~---~~~A~~~----------------------~~~m~~~-g~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 438 (639)
. ..++..+ .+..... +. ++ +...|..+..++.. ++.++|...+.+.....
T Consensus 428 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~ 506 (987)
T PRK09782 428 YLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ 506 (987)
T ss_pred cccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC
Confidence 4 1122111 1111000 11 22 45556666666665 77888888777776543
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC-HHHH
Q 037477 439 CIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW-QATF 517 (639)
Q Consensus 439 ~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~ 517 (639)
|+......+...+...|++++|...|+++... .|+...+..+...+.+.|+.++|...++...+. .|+ ...+
T Consensus 507 --Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l---~P~~~~l~ 579 (987)
T PRK09782 507 --PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR---GLGDNALY 579 (987)
T ss_pred --CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCccHHHH
Confidence 66544444455556899999999999987654 444455666677888899999999999988765 243 3333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHH---HHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 037477 518 KTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFV---QYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEG 594 (639)
Q Consensus 518 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~---~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 594 (639)
..+...+.+.|++++|...+++..+. .|+...+. .++.+.|+.++|+..+++.....|.+...+..+..++...|
T Consensus 580 ~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G 657 (987)
T PRK09782 580 WWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSG 657 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 34444455669999999999998873 45544433 33468899999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhCCccccCChh
Q 037477 595 RHYEAKDLLYKCPHHIRQDSK 615 (639)
Q Consensus 595 ~~~~A~~~~~~m~~~~~~~~~ 615 (639)
++++|++.+++.....+..+.
T Consensus 658 ~~eeAi~~l~~AL~l~P~~~~ 678 (987)
T PRK09782 658 DIAQSREMLERAHKGLPDDPA 678 (987)
T ss_pred CHHHHHHHHHHHHHhCCCCHH
Confidence 999999999885333333333
No 22
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.72 E-value=3.5e-14 Score=138.71 Aligned_cols=407 Identities=13% Similarity=0.066 Sum_probs=300.4
Q ss_pred CCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHH
Q 037477 106 DNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAA 185 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~ 185 (639)
..+.+.....-....++ .+.-..+|..+...+-..|++++|+.+|+.|.+.. +-....|..+-.++...|+.+.+.
T Consensus 95 ~~r~d~s~a~~~~a~r~--~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~- 170 (966)
T KOG4626|consen 95 GSRLDKSSAGSLLAIRK--NPQGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAV- 170 (966)
T ss_pred ccchhhhhhhhhhhhhc--cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccH-
Confidence 44555544443333331 22346789999999999999999999999999874 124567888888888888766553
Q ss_pred HHHHHHHHhhhccchhHHHHHHHHHhcCCchHHHHHHHhhccCcCCHHHHHHHHHHhccChHHHHHHHHHHhccCCCCC-
Q 037477 186 LNQFHDGMVKEIAMDNVAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKH- 264 (639)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p- 264 (639)
+.+...++.++... ....-...+.+..|+.++|...|.+..+. +|
T Consensus 171 --~~~~~alqlnP~l~-----------------------------ca~s~lgnLlka~Grl~ea~~cYlkAi~~---qp~ 216 (966)
T KOG4626|consen 171 --QCFFEALQLNPDLY-----------------------------CARSDLGNLLKAEGRLEEAKACYLKAIET---QPC 216 (966)
T ss_pred --HHHHHHHhcCcchh-----------------------------hhhcchhHHHHhhcccchhHHHHHHHHhh---CCc
Confidence 33444444322111 00011112222346666777777665422 34
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 037477 265 NTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMD-IDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLL 343 (639)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll 343 (639)
=.+.|+.|...+-..|+...|++-|++..+. .|+ ...|-.|...|...+.+++|+..|...... .|+
T Consensus 217 fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn-------- 284 (966)
T KOG4626|consen 217 FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPN-------- 284 (966)
T ss_pred eeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCc--------
Confidence 3568888988999999999999999998876 344 567888888898899999998888776542 232
Q ss_pred HHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 037477 344 RSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGR 423 (639)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 423 (639)
...++..+...|-..|+++.|...+++..+.. +.-...|+.|..++-..|+
T Consensus 285 ----------------------------~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~ 335 (966)
T KOG4626|consen 285 ----------------------------HAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGS 335 (966)
T ss_pred ----------------------------chhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccc
Confidence 12345567777889999999999999998773 2236789999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 037477 424 FEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVE 503 (639)
Q Consensus 424 ~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 503 (639)
+.+|...|.+....... -....+.|...|...|.++.|..+|....+-. +--...++.|...|-++|++++|+..+++
T Consensus 336 V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Yke 413 (966)
T KOG4626|consen 336 VTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKE 413 (966)
T ss_pred hHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHH
Confidence 99999999998875432 45678889999999999999999999888753 22346688899999999999999999998
Q ss_pred HHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH----hHHHHHhhcCCHHHHHHHHHHhhcCCCC
Q 037477 504 MIEKVRLRPW-QATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPE----PFVQYISKFGTVEDASEFLKALSVKEYP 578 (639)
Q Consensus 504 m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~g~~~~a~~~~~~~~~~~~~ 578 (639)
.. .+.|+ ...|+.|-..|-..|+.+.|++.+.+... +.|... .+..++...|++.+|+.-++...+..|.
T Consensus 414 al---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 414 AL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 86 46777 56788898999999999999999998886 556533 2344456789999999999999999888
Q ss_pred CHHHHHHHHHHHHhcCCHHH
Q 037477 579 SSAAYLQVFESFFNEGRHYE 598 (639)
Q Consensus 579 ~~~~~~~l~~~~~~~g~~~~ 598 (639)
.+..|-.++.++--..+|.+
T Consensus 489 fpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 489 FPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred CchhhhHHHHHHHHHhcccc
Confidence 88888888777754444443
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.71 E-value=4.6e-12 Score=136.59 Aligned_cols=440 Identities=12% Similarity=0.031 Sum_probs=248.0
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCCh--HHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 037477 96 ESVVYVLRKLDNDPEKASAFFNWVCDKKQFRPSS--TVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGV 173 (639)
Q Consensus 96 ~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~ 173 (639)
.....++....|+++.|+..|+.+.+.. |+. ..+ .++..+...|+.++|+..+++.... -.........+...
T Consensus 37 ~y~~aii~~r~Gd~~~Al~~L~qaL~~~---P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~l 111 (822)
T PRK14574 37 QYDSLIIRARAGDTAPVLDYLQEESKAG---PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARA 111 (822)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhC---ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHH
Confidence 3334444444799999999999998732 443 234 8888888899999999999988721 11222222333445
Q ss_pred HHhcCchhhHHHHHHHHHHHhhhccch-hHHHHHHHHHhcCCchHHHHHHHhhccCcCCHHHHHHHHHHhccChHHHHHH
Q 037477 174 LKKAKKASDLAALNQFHDGMVKEIAMD-NVAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVKALGF 252 (639)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~ 252 (639)
+...|+++.+ ..+++.+++..+.+ .+...+...+.. .+..++|++.
T Consensus 112 y~~~gdyd~A---iely~kaL~~dP~n~~~l~gLa~~y~~------------------------------~~q~~eAl~~ 158 (822)
T PRK14574 112 YRNEKRWDQA---LALWQSSLKKDPTNPDLISGMIMTQAD------------------------------AGRGGVVLKQ 158 (822)
T ss_pred HHHcCCHHHH---HHHHHHHHhhCCCCHHHHHHHHHHHhh------------------------------cCCHHHHHHH
Confidence 5666655544 33344444432221 122111111111 2445555555
Q ss_pred HHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC
Q 037477 253 FRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPY 332 (639)
Q Consensus 253 f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~ 332 (639)
++.+.+. .|+...+-.++..+...++..+|++.++++.+.. +-+...+..+..++.+.|-...|+++..+-.+. +
T Consensus 159 l~~l~~~---dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f 233 (822)
T PRK14574 159 ATELAER---DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-V 233 (822)
T ss_pred HHHhccc---CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-c
Confidence 5555322 3344444333333333444444666666665553 334455555555555666555555544432210 0
Q ss_pred CCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCC---hhHHHHHHHHHHHC-CCCCCH
Q 037477 333 KPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGR---FDEAEKMMKAMKNA-GFEPDN 408 (639)
Q Consensus 333 ~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~-g~~~~~ 408 (639)
.+. .+.-|- ...+.+ ..+....++ -....+ .+.|+.-++.+... +-.|..
T Consensus 234 ~~~--~~~~l~----------~~~~a~----~vr~a~~~~----------~~~~~r~~~~d~ala~~~~l~~~~~~~p~~ 287 (822)
T PRK14574 234 SAE--HYRQLE----------RDAAAE----QVRMAVLPT----------RSETERFDIADKALADYQNLLTRWGKDPEA 287 (822)
T ss_pred CHH--HHHHHH----------HHHHHH----HHhhccccc----------ccchhhHHHHHHHHHHHHHHHhhccCCCcc
Confidence 000 000000 000000 000000000 001112 23344444444431 112321
Q ss_pred -HhH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCCH
Q 037477 409 -ITY----SQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKN-----YDADA 478 (639)
Q Consensus 409 -~~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g-----~~~~~ 478 (639)
..| --.+-++...|++.++++.|+.|...|......+-..+.++|...+++++|..++..+.... ..++.
T Consensus 288 ~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~ 367 (822)
T PRK14574 288 QADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDL 367 (822)
T ss_pred chHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcch
Confidence 111 23455667788888888888888887765455677788888888888888888888886642 12334
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHhCC------------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 037477 479 DLLDVLINGFLSQKRVNGAYKLLVEMIEKVR------------LRPW-QATFKTLIEKLLGARRLEEAMNLLRLMKKQNY 545 (639)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------------~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 545 (639)
.....|.-+|...+++++|..+++.+.+... ..|| ...+..++..+.-.|++.+|++.++++...
T Consensus 368 ~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-- 445 (822)
T PRK14574 368 LDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-- 445 (822)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 4456778888888888888888888876311 1222 233444566677888888888888888763
Q ss_pred CCChHh----HHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 546 PPFPEP----FVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 546 ~p~~~~----~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
.|...- ...+....|...+|++.++......|.+..+....+.++...|+|.+|..+.++.
T Consensus 446 aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 446 APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 344332 2344467788888888887777777888888888888888888888887777553
No 24
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.71 E-value=5.7e-14 Score=137.29 Aligned_cols=356 Identities=14% Similarity=0.094 Sum_probs=250.1
Q ss_pred ccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHH
Q 037477 243 RIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYI-KISRQFQKFRMMEDAV 321 (639)
Q Consensus 243 ~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~a~ 321 (639)
+++.++|+..|+.+.+.. +-.+..|..+..++...|+.+.|.+.|.+..+. .|+..... .+....-..|++++|.
T Consensus 129 rg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred hchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhH
Confidence 455556666666664321 224566777777777777777777777666654 34443332 2333334456667766
Q ss_pred HHHHHhhcCCCCCCH-HHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHccCChhHHHHHHHHH
Q 037477 322 KLFEFMMDGPYKPSV-QDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLS-KSVYDGIHRALTKLGRFDEAEKMMKAM 399 (639)
Q Consensus 322 ~l~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (639)
.-|.+..+. +|.- ..|+.|=..+-.. ++...+.+-+++. ..+.|+ ...|-.+-..|...+.++.|...+.+.
T Consensus 205 ~cYlkAi~~--qp~fAiawsnLg~~f~~~--Gei~~aiq~y~eA--vkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rA 278 (966)
T KOG4626|consen 205 ACYLKAIET--QPCFAIAWSNLGCVFNAQ--GEIWLAIQHYEEA--VKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRA 278 (966)
T ss_pred HHHHHHHhh--CCceeeeehhcchHHhhc--chHHHHHHHHHHh--hcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHH
Confidence 666665543 2211 1122111111111 1222222222222 233333 245777888889999999999998887
Q ss_pred HHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 037477 400 KNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPD-IKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADA 478 (639)
Q Consensus 400 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 478 (639)
.... +-..+.+..+...|-..|.++-|+..|++..+.. |+ ...|+.|..++-..|++.+|.+.+++.+... .-..
T Consensus 279 l~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~ha 354 (966)
T KOG4626|consen 279 LNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHA 354 (966)
T ss_pred HhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC--CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccH
Confidence 7653 2345667777777889999999999999998864 44 5789999999999999999999999999874 3356
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH-hH---H
Q 037477 479 DLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW-QATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPE-PF---V 553 (639)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~---~ 553 (639)
...+.|...|...|.+++|..+|....+ +.|. ...++.|...|-+.|++++|+..+++..+ +.|+.. .+ .
T Consensus 355 dam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmG 429 (966)
T KOG4626|consen 355 DAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMG 429 (966)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcc
Confidence 7788999999999999999999998875 3555 45788899999999999999999999987 667643 22 2
Q ss_pred HHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CccccCChhHH
Q 037477 554 QYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKC-PHHIRQDSKIS 617 (639)
Q Consensus 554 ~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m-~~~~~~~~~~~ 617 (639)
..+...|+++.|.+.+.+.....|.-.+.++.|...|-..|+..+|++-++.. +-+++.+.-..
T Consensus 430 nt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~c 494 (966)
T KOG4626|consen 430 NTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYC 494 (966)
T ss_pred hHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhh
Confidence 33567899999999999999998889999999999999999999999999986 33344433333
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.68 E-value=4e-12 Score=131.19 Aligned_cols=528 Identities=11% Similarity=0.065 Sum_probs=327.9
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHhcCCChHHHHHHHHHHhhc-CCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCC
Q 037477 82 LENKLEELSPKLTHESVVYVLRKLDNDPEKASAFFNWVCDK-KQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHC 160 (639)
Q Consensus 82 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~ 160 (639)
+..+++..+...-+-+--..+.--.+++..|+.+|..+... ....||+.. .+-..+.+.|+.+.|...|....+..
T Consensus 153 F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLd- 229 (1018)
T KOG2002|consen 153 FHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLD- 229 (1018)
T ss_pred HHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcC-
Confidence 44555555544444444444444468999999999986653 334455532 12245568899999999998888753
Q ss_pred CCCHHHHHHHHHHH-HhcCchhhHHHHHHHHHHHhhh-ccchhHHHHHHHHHhcCCchHHHHHHHhhccCcCCHHHH---
Q 037477 161 YIEEETYLSILGVL-KKAKKASDLAALNQFHDGMVKE-IAMDNVAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFV--- 235 (639)
Q Consensus 161 ~~~~~t~~~ll~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 235 (639)
|+.+.-...|..+ ....+.+....+.+.+...... +..|.+.+.|-+.|--.++...+......+-.......+
T Consensus 230 -p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~ae 308 (1018)
T KOG2002|consen 230 -PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAE 308 (1018)
T ss_pred -hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHH
Confidence 3222221222222 1223334445556666665554 566778888888888888888877777665322111111
Q ss_pred ----HHHHHHhccChHHHHHHHHHHhccCCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037477 236 ----LTVLKELRIYPVKALGFFRWVGEHSGYKHN--TITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISR 309 (639)
Q Consensus 236 ----~~~l~~~~~~~~~A~~~f~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 309 (639)
+.--....|+.++|..+|....+ ..+| +..+--|...|.+.|+++.+...|+.+.+.. +-+..|...+..
T Consensus 309 s~Y~~gRs~Ha~Gd~ekA~~yY~~s~k---~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~ 384 (1018)
T KOG2002|consen 309 SFYQLGRSYHAQGDFEKAFKYYMESLK---ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGC 384 (1018)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHc---cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHh
Confidence 11112336999999999988743 2343 4455667899999999999999999998873 446677777877
Q ss_pred HHHhcC----CHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCC-CchhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 037477 310 QFQKFR----MMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINN-PDLGLVFRVANKYESLGNSLSKSVYDGIHRALT 384 (639)
Q Consensus 310 ~~~~~g----~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 384 (639)
.|+..+ ..+.|..++....+.- .-|...|-.+-..+-.... ..++......+.+...+..+...+.|.+.....
T Consensus 385 Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf 463 (1018)
T KOG2002|consen 385 LYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHF 463 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHH
Confidence 787775 4566666666655432 3344555555544443321 113334455556667777788899999999999
Q ss_pred ccCChhHHHHHHHHHHHC---CCCCCHH-------hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHH
Q 037477 385 KLGRFDEAEKMMKAMKNA---GFEPDNI-------TYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIK-TWTILIQGH 453 (639)
Q Consensus 385 ~~g~~~~A~~~~~~m~~~---g~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~li~~~ 453 (639)
..|++.+|...|+..... ...+|.. -|| +...+-..++.+.|.+.|..+.+.. |+-+ .|-.+...-
T Consensus 464 ~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN-larl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma 540 (1018)
T KOG2002|consen 464 RLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN-LARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMA 540 (1018)
T ss_pred HhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH-HHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHH
Confidence 999999999999988765 2233331 233 4455666778888888888888753 4433 333333222
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------
Q 037477 454 CAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLG------- 526 (639)
Q Consensus 454 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~------- 526 (639)
...+...+|...++.....+ ..+...+..+-..+.+...+..|.+-|..+.++....+|..+.-+|-..|.+
T Consensus 541 ~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~r 619 (1018)
T KOG2002|consen 541 RDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSR 619 (1018)
T ss_pred HhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccccc
Confidence 33466777888887777643 3344455555556777777777777666666554444564444444443332
Q ss_pred -----cCCHHHHHHHHHHHHhCCCCCCh--HhHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037477 527 -----ARRLEEAMNLLRLMKKQNYPPFP--EPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEA 599 (639)
Q Consensus 527 -----~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 599 (639)
.+..++|+++|++..+.....-. .-...+++.+|++++|..+|.++.+.......+|..+.++|...|+|..|
T Consensus 620 n~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~A 699 (1018)
T KOG2002|consen 620 NPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLA 699 (1018)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHH
Confidence 24566777777777663311111 12345567778888888888887776555667777788888888888888
Q ss_pred HHHHhhCCc--cccCChhHHHhhhc
Q 037477 600 KDLLYKCPH--HIRQDSKISLLFGS 622 (639)
Q Consensus 600 ~~~~~~m~~--~~~~~~~~~~l~~~ 622 (639)
+++|+.+.. .....+.+...++-
T Consensus 700 IqmYe~~lkkf~~~~~~~vl~~Lar 724 (1018)
T KOG2002|consen 700 IQMYENCLKKFYKKNRSEVLHYLAR 724 (1018)
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHH
Confidence 888877622 23344444444443
No 26
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.65 E-value=3.1e-12 Score=140.61 Aligned_cols=369 Identities=11% Similarity=0.071 Sum_probs=256.0
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhhccchhHHHHHH
Q 037477 128 SSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAALNQFHDGMVKEIAMDNVAKTLV 207 (639)
Q Consensus 128 ~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 207 (639)
+..--.-.+.+....|+.++|+.+|.+..... +.+...+..+-..+...|+++
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~-------------------------- 66 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQ-------------------------- 66 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHH--------------------------
Confidence 44444556667778899999999998887622 344555666666666665444
Q ss_pred HHHhcCCchHHHHHHHhhccCcCCHHHHHHHHHHhccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 037477 208 DVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWN 287 (639)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 287 (639)
+|..+|+...+.. +.+...+..+...+.+.|++++|..
T Consensus 67 ----------------------------------------~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~~~eA~~ 104 (765)
T PRK10049 67 ----------------------------------------NSLTLWQKALSLE--PQNDDYQRGLILTLADAGQYDEALV 104 (765)
T ss_pred ----------------------------------------HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4555555543221 3356677788889999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhc
Q 037477 288 VVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESL 367 (639)
Q Consensus 288 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 367 (639)
.+++..+.. +.+.. +..+..++...|+.++|+..++++.+. .|+..
T Consensus 105 ~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~------------------------------ 150 (765)
T PRK10049 105 KAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQ------------------------------ 150 (765)
T ss_pred HHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCH------------------------------
Confidence 999998873 44566 888999999999999999999999764 33321
Q ss_pred CCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH------HhHHHHHHHHH-----hcCCH---HHHHHHHHH
Q 037477 368 GNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDN------ITYSQVIFGLC-----KAGRF---EDACNVLDE 433 (639)
Q Consensus 368 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~ 433 (639)
..+..+..++...|..++|++.++.... .|+. .....++..+. ..+++ ++|++.++.
T Consensus 151 ------~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ 221 (765)
T PRK10049 151 ------QYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDA 221 (765)
T ss_pred ------HHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHH
Confidence 2233345556667778888877765543 2221 01122222222 22334 778889998
Q ss_pred HHHC-CCCCCHH-HHH----HHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 037477 434 MEEN-GCIPDIK-TWT----ILIQGHCAANEVDRALLCFAKMMEKNYD-ADADLLDVLINGFLSQKRVNGAYKLLVEMIE 506 (639)
Q Consensus 434 m~~~-~~~p~~~-t~~----~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (639)
+.+. ...|+.. .+. ..+..+...|+.++|...|+.+.+.+.. |+. .-..+...|...|++++|...|+.+.+
T Consensus 222 ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 222 LEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFY 300 (765)
T ss_pred HHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 8854 2223321 111 1134456779999999999999987632 332 222256789999999999999999876
Q ss_pred hCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCChH------hHHHHHhhcCCHHHHHH
Q 037477 507 KVRLRP--WQATFKTLIEKLLGARRLEEAMNLLRLMKKQNY-----------PPFPE------PFVQYISKFGTVEDASE 567 (639)
Q Consensus 507 ~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----------~p~~~------~~~~ll~~~g~~~~a~~ 567 (639)
.....+ ....+..+..++...|++++|.++++.+.+... .|+.. ....++...|+.++|++
T Consensus 301 ~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~ 380 (765)
T PRK10049 301 HPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEM 380 (765)
T ss_pred cCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHH
Confidence 422221 134566777788999999999999999987421 12321 22344568899999999
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCcc
Q 037477 568 FLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHH 609 (639)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 609 (639)
.++++....|.+...+..+...+...|++++|++.+++....
T Consensus 381 ~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 381 RARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVL 422 (765)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999996443
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.61 E-value=9.8e-11 Score=126.48 Aligned_cols=327 Identities=10% Similarity=0.018 Sum_probs=196.7
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCch
Q 037477 275 VLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDL 354 (639)
Q Consensus 275 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 354 (639)
.|...|++++|.++|+++.+.. +-+...+..++..+...++.++|++.++.+... .|+...+ +..++...+..+.
T Consensus 111 ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~--l~layL~~~~~~~ 185 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNY--MTLSYLNRATDRN 185 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHH--HHHHHHHHhcchH
Confidence 4444455555555555554442 222333444444444455555555555444433 3333333 1112222111122
Q ss_pred hHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhH------HHHHHHH-----HhcCC
Q 037477 355 GLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITY------SQVIFGL-----CKAGR 423 (639)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~------~~li~~~-----~~~g~ 423 (639)
..+...++++.+.. +.+...+..++.++.+.|-...|.++..+-...- .+...-+ ..+++.- ....+
T Consensus 186 ~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r 263 (822)
T PRK14574 186 YDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTRSETER 263 (822)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 22333333333332 2233444555566666666666665554422110 0000000 0011000 01122
Q ss_pred ---HHHHHHHHHHHHHC-CCCCCHH-H----HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh
Q 037477 424 ---FEDACNVLDEMEEN-GCIPDIK-T----WTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRV 494 (639)
Q Consensus 424 ---~~~A~~~~~~m~~~-~~~p~~~-t----~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 494 (639)
.+.|+.-++.+... +-.|... . .--.+-++...|+..++.+.++.+...|.+....+-.++.++|...+.+
T Consensus 264 ~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P 343 (822)
T PRK14574 264 FDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLP 343 (822)
T ss_pred HHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCc
Confidence 34455555555542 2224321 1 2234557788999999999999999998776677888999999999999
Q ss_pred hHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------------CCCChHhHHHH--
Q 037477 495 NGAYKLLVEMIEKVR----LRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQN-------------YPPFPEPFVQY-- 555 (639)
Q Consensus 495 ~~A~~~~~~m~~~~~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------------~~p~~~~~~~l-- 555 (639)
++|..+|..+....+ ..++......|.-+|...+++++|..+++.+.+.. ..||......+
T Consensus 344 ~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a 423 (822)
T PRK14574 344 EKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLV 423 (822)
T ss_pred HHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHH
Confidence 999999999876432 23344456789999999999999999999998731 12344444332
Q ss_pred --HhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCc
Q 037477 556 --ISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPH 608 (639)
Q Consensus 556 --l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 608 (639)
+.-.|++.+|++.++++....|-|......+.+.+...|++.+|.+.++....
T Consensus 424 ~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~ 478 (822)
T PRK14574 424 QSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVES 478 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 35679999999999999999999999999999999999999999999977543
No 28
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.55 E-value=1.9e-09 Score=111.89 Aligned_cols=426 Identities=11% Similarity=0.058 Sum_probs=268.0
Q ss_pred CCChHHHHHHHHHHhhcCCCCC-ChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHH--HHHHHHHhcCchhh
Q 037477 106 DNDPEKASAFFNWVCDKKQFRP-SSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYL--SILGVLKKAKKASD 182 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~--~ll~~~~~~~~~~~ 182 (639)
.+++..++.+...+....-..+ -..+|=.+-++|-..|++++|...|.+-.+ ..+|.++++ -|-..+.+.|+.+.
T Consensus 283 K~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k--~~~d~~~l~~~GlgQm~i~~~dle~ 360 (1018)
T KOG2002|consen 283 KKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK--ADNDNFVLPLVGLGQMYIKRGDLEE 360 (1018)
T ss_pred cccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc--cCCCCccccccchhHHHHHhchHHH
Confidence 5777777777777766210000 123466677788888888888888855444 345554443 35566777775555
Q ss_pred HHHHHHHHHHHhhhccchh-HHHHHHHHHhcCC----chHHHHHHHhhcc--CcCCH-HHHHHHHHHhccChHHHHHHHH
Q 037477 183 LAALNQFHDGMVKEIAMDN-VAKTLVDVVLGSD----WDDKIGKKLEDMK--IELSD-NFVLTVLKELRIYPVKALGFFR 254 (639)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~----~~~~~~~~~~~~~--~~~~~-~~~~~~l~~~~~~~~~A~~~f~ 254 (639)
+ ...|+.+.+..+... ....+-.+|...+ ..+.+...+.+.- .+.+. .++.....-..+++..++.+|.
T Consensus 361 s---~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~ 437 (1018)
T KOG2002|consen 361 S---KFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYG 437 (1018)
T ss_pred H---HHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHH
Confidence 4 344556555543333 3333444444432 2233333333331 11111 1111111111345555566665
Q ss_pred HHh---ccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHhcCCHHHHHH
Q 037477 255 WVG---EHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKE---GYEMDI------DTYIKISRQFQKFRMMEDAVK 322 (639)
Q Consensus 255 ~~~---~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~------~~~~~li~~~~~~g~~~~a~~ 322 (639)
... ...+-++-....|.+.......|+++.|...|...... ...+|. .+--.+...+-..++.+.|.+
T Consensus 438 ~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e 517 (1018)
T KOG2002|consen 438 NALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEE 517 (1018)
T ss_pred HHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHH
Confidence 442 22333467788888888888899999998888887655 122222 233345555666778888889
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHH-HHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 037477 323 LFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANK-YESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKN 401 (639)
Q Consensus 323 l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 401 (639)
+|..+.+. -|+-.+...-+.+..+.... ...+...+.. +......|+ .+..+-..+.+...+..|.+-|....+
T Consensus 518 ~Yk~Ilke--hp~YId~ylRl~~ma~~k~~-~~ea~~~lk~~l~~d~~np~--arsl~G~~~l~k~~~~~a~k~f~~i~~ 592 (1018)
T KOG2002|consen 518 MYKSILKE--HPGYIDAYLRLGCMARDKNN-LYEASLLLKDALNIDSSNPN--ARSLLGNLHLKKSEWKPAKKKFETILK 592 (1018)
T ss_pred HHHHHHHH--CchhHHHHHHhhHHHHhccC-cHHHHHHHHHHHhcccCCcH--HHHHHHHHHHhhhhhcccccHHHHHHh
Confidence 88888765 45544444433333333332 3333333333 333333344 444466678888888888887776654
Q ss_pred CC-CCCCHHhHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 037477 402 AG-FEPDNITYSQVIFGLCK------------AGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAK 468 (639)
Q Consensus 402 ~g-~~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 468 (639)
.- ..+|+.+.-+|.+.|.. .+..++|+++|.+..+.... |.+.-|-+.-.++..|+++.|..+|.+
T Consensus 593 ~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsq 671 (1018)
T KOG2002|consen 593 KTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQ 671 (1018)
T ss_pred hhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHH
Confidence 32 23566666666665543 34577899999988887644 777888888889999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 037477 469 MMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQ 543 (639)
Q Consensus 469 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 543 (639)
..+... -+..+|..+.++|..+|++..|+++|+...+++.-.-+....+.|.+++.+.|.+.+|.+.+......
T Consensus 672 VrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 672 VREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 988753 24566888889999999999999999998888776667888899999999999999999988777663
No 29
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.52 E-value=5.4e-11 Score=121.53 Aligned_cols=459 Identities=12% Similarity=0.071 Sum_probs=243.5
Q ss_pred CCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcC------------------------CCCCHHHHHHHHHHHHhcC
Q 037477 123 KQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDH------------------------CYIEEETYLSILGVLKKAK 178 (639)
Q Consensus 123 ~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g------------------------~~~~~~t~~~ll~~~~~~~ 178 (639)
.|+.||.++|..+|.-|+..|+.+.|- +|.-|.-.. -.|...||..|+.+|+..|
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr~hG 97 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYRIHG 97 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHHhcc
Confidence 455566666666666666655555554 444333211 1477889999999999999
Q ss_pred chhhHHHHHHHHHHHhhh----ccchhHHHHHHH----------------HHhcCCchHHHHHHHhhccCcCCHHHHHHH
Q 037477 179 KASDLAALNQFHDGMVKE----IAMDNVAKTLVD----------------VVLGSDWDDKIGKKLEDMKIELSDNFVLTV 238 (639)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (639)
+....+.+.+-+..+... |......--+.. ...-.|..+...+.+..++..-.++-....
T Consensus 98 Dli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~~vf 177 (1088)
T KOG4318|consen 98 DLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVF 177 (1088)
T ss_pred chHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHHH
Confidence 877666555533333221 211111111111 111122223333334334322111111123
Q ss_pred HHHhccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 037477 239 LKELRIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMME 318 (639)
Q Consensus 239 l~~~~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 318 (639)
+..+.-...-..++.+....-.+ .||..+|.+++.+-.-+|+.+.|..++.+|+++|++.+..-|-.++-+ .++..
T Consensus 178 Lrqnv~~ntpvekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q 253 (1088)
T KOG4318|consen 178 LRQNVVDNTPVEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQ 253 (1088)
T ss_pred HHHhccCCchHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---Cccch
Confidence 55554443334444444433334 699999999999999999999999999999999999998877777655 78888
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHccCChh----
Q 037477 319 DAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLS----KSVYDGIHRALTKLGRFD---- 390 (639)
Q Consensus 319 ~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~---- 390 (639)
.+..++..|...|+.|+..|+...+-.+...+. -...+.|...+ ..++..+.++.....+++
T Consensus 254 ~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~----------t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~ 323 (1088)
T KOG4318|consen 254 VFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ----------TKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLR 323 (1088)
T ss_pred HHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh----------hhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHH
Confidence 999999999999999999999988777665331 01111122211 122222222211111111
Q ss_pred -HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCC-CHHHHHHHHHHHHHcCC--------
Q 037477 391 -EAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENG--CIP-DIKTWTILIQGHCAANE-------- 458 (639)
Q Consensus 391 -~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p-~~~t~~~li~~~~~~g~-------- 458 (639)
-....+.+..-.|+......|...+.. ...|+-++..++-..|..-- ..+ ++..|..++.-|.+.-+
T Consensus 324 ~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~ 402 (1088)
T KOG4318|consen 324 KSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIY 402 (1088)
T ss_pred HHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 111112222222433333444333222 22566666666666554311 111 23344444444333211
Q ss_pred --------------HHHHHHHHHHHHHcCCCCCHH----------------------------HHHHHHHHHHcCCChhH
Q 037477 459 --------------VDRALLCFAKMMEKNYDADAD----------------------------LLDVLINGFLSQKRVNG 496 (639)
Q Consensus 459 --------------~~~a~~~~~~m~~~g~~~~~~----------------------------~~~~li~~~~~~g~~~~ 496 (639)
..+..++.... .||.. .-+.++..|++.-+..+
T Consensus 403 ~~~qgls~~l~se~tp~vsell~~l-----rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK 477 (1088)
T KOG4318|consen 403 YAGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLK 477 (1088)
T ss_pred HHHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111111 22211 11233334444434444
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCChHhHHHHHhhcCCHHHHHHHHHH
Q 037477 497 AYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNY-----PPFPEPFVQYISKFGTVEDASEFLKA 571 (639)
Q Consensus 497 A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----~p~~~~~~~ll~~~g~~~~a~~~~~~ 571 (639)
++..-+.... ..-| -.|..||+-++...+.+.|..+.++...... .|.......++.+.+...++..+++.
T Consensus 478 ~l~~~ekye~--~lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e 553 (1088)
T KOG4318|consen 478 ILCDEEKYED--LLFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYE 553 (1088)
T ss_pred HHHHHHHHHH--HHhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhh
Confidence 4433222221 1122 3677888888888888888888887764321 12333445666778888888888887
Q ss_pred hhcC--C-CCCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 572 LSVK--E-YPSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 572 ~~~~--~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
+.+. . +....+.-.+.+..+..|+.+...++.+-.
T Consensus 554 ~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~l 591 (1088)
T KOG4318|consen 554 DKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADIL 591 (1088)
T ss_pred hhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHH
Confidence 7765 2 223445556677777778877777776654
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.50 E-value=5.4e-09 Score=107.87 Aligned_cols=352 Identities=9% Similarity=0.074 Sum_probs=217.4
Q ss_pred CCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCchhhHH
Q 037477 106 DNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHC-YIEEETYLSILGVLKKAKKASDLA 184 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~-~~~~~t~~~ll~~~~~~~~~~~~~ 184 (639)
+|+.++|.+++.++.++.+ .+...|-+|-..|-..|+.+++...+ |..... +-|...|..+-....+.|+++.+.
T Consensus 152 rg~~eeA~~i~~EvIkqdp--~~~~ay~tL~~IyEqrGd~eK~l~~~--llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDP--RNPIAYYTLGEIYEQRGDIEKALNFW--LLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred hCCHHHHHHHHHHHHHhCc--cchhhHHHHHHHHHHcccHHHHHHHH--HHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 7999999999999998643 67789999999999999999988776 444443 346677888877778887777664
Q ss_pred HHHHHHHHHhhhccchh-HHHHHHHHHhcCCchHHHHHHHhhccCcCCHHHHHHHHHHhccChHHHHHHHHHHhccCCCC
Q 037477 185 ALNQFHDGMVKEIAMDN-VAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYK 263 (639)
Q Consensus 185 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~ 263 (639)
-.|...++..+.+- ..-.-..+|.+. |+...|.+.|.++..-.+ +
T Consensus 228 ---~cy~rAI~~~p~n~~~~~ers~L~~~~------------------------------G~~~~Am~~f~~l~~~~p-~ 273 (895)
T KOG2076|consen 228 ---YCYSRAIQANPSNWELIYERSSLYQKT------------------------------GDLKRAMETFLQLLQLDP-P 273 (895)
T ss_pred ---HHHHHHHhcCCcchHHHHHHHHHHHHh------------------------------ChHHHHHHHHHHHHhhCC-c
Confidence 34555555433221 222223333333 444455555555532211 1
Q ss_pred CCHH----HHHHHHHHHHcCCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC-------
Q 037477 264 HNTI----TYNGILRVLARHESVRDFWNVVEEMKKE-GYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGP------- 331 (639)
Q Consensus 264 p~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g------- 331 (639)
.|.. .--.++..+...++-+.|++.++..... +-..+...++.++..|.+...++.|......+....
T Consensus 274 ~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e 353 (895)
T KOG2076|consen 274 VDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSE 353 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhh
Confidence 1111 1122344455555556666666665542 123344556666666666677777666666665422
Q ss_pred --------------------CCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcC--CCCChhhHHHHHHHHHccCCh
Q 037477 332 --------------------YKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLG--NSLSKSVYDGIHRALTKLGRF 389 (639)
Q Consensus 332 --------------------~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~ 389 (639)
+.++...+..++ ++.... +.+....+........ ...+...|.-+..+|...|++
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i-cL~~L~--~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~ 430 (895)
T KOG2076|consen 354 WDTDERRREEPNALCEVGKELSYDLRVIRLMI-CLVHLK--ERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKY 430 (895)
T ss_pred hhhhhhccccccccccCCCCCCccchhHhHhh-hhhccc--ccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccH
Confidence 222222211111 111112 2333334444444444 334456788888889999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 037477 390 DEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKM 469 (639)
Q Consensus 390 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 469 (639)
.+|+.+|..+......-+...|--+..+|...|..++|.+.|+........ +...-..|-..+-+.|+.++|.+.+..+
T Consensus 431 ~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 431 KEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred HHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 999999988887755556778888888888899999999998888875422 3445556667778889999998888885
Q ss_pred HH--------cCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 037477 470 ME--------KNYDADADLLDVLINGFLSQKRVNGAYK 499 (639)
Q Consensus 470 ~~--------~g~~~~~~~~~~li~~~~~~g~~~~A~~ 499 (639)
.. .+..|+........+.+...|+.++-..
T Consensus 510 ~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 510 INPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred cCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 42 3345555555555666677777665433
No 31
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.44 E-value=4.9e-10 Score=114.23 Aligned_cols=283 Identities=12% Similarity=0.077 Sum_probs=201.6
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchh
Q 037477 277 ARHESVRDFWNVVEEMKKEGYEMD-IDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLG 355 (639)
Q Consensus 277 ~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~ 355 (639)
...|+++.|.+.+....+. .|+ ...+-....+..+.|+.+.|.+.+.+..+.. |+..
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~------------------ 152 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDN------------------ 152 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCc------------------
Confidence 4579999999999887766 344 3344555677888899999999998875431 2211
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037477 356 LVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEME 435 (639)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 435 (639)
..+.-.....+...|+++.|...++.+.+.. +-+...+..+...|...|++++|.+.+..+.
T Consensus 153 -----------------l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~ 214 (409)
T TIGR00540 153 -----------------ILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMA 214 (409)
T ss_pred -----------------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 0111223566778899999999999999886 4467788899999999999999999999999
Q ss_pred HCCCCCCHHHHH-HHHH---HHHHcCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhC
Q 037477 436 ENGCIPDIKTWT-ILIQ---GHCAANEVDRALLCFAKMMEKNY---DADADLLDVLINGFLSQKRVNGAYKLLVEMIEKV 508 (639)
Q Consensus 436 ~~~~~p~~~t~~-~li~---~~~~~g~~~~a~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 508 (639)
+.++. +...+. .-.. +....+..+.+.+.+..+.+... +.+...+..+...+...|+.++|.+++++..++
T Consensus 215 k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~- 292 (409)
T TIGR00540 215 KAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK- 292 (409)
T ss_pred HcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh-
Confidence 98764 333332 1112 22333333334445555554321 237888889999999999999999999999876
Q ss_pred CCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH------hHHHHHhhcCCHHHHHHHHHHhhcC-CCC
Q 037477 509 RLRPWQAT---FKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPE------PFVQYISKFGTVEDASEFLKALSVK-EYP 578 (639)
Q Consensus 509 ~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~~~ll~~~g~~~~a~~~~~~~~~~-~~~ 578 (639)
.|+... .....-.....++.+.+.+.++...+. .|+.. ++..++.+.|++++|.++|+..... ..|
T Consensus 293 --~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p 368 (409)
T TIGR00540 293 --LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL 368 (409)
T ss_pred --CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC
Confidence 344321 112222234457888899999887763 34444 4556667899999999999964333 467
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 037477 579 SSAAYLQVFESFFNEGRHYEAKDLLYK 605 (639)
Q Consensus 579 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 605 (639)
+.+.+..+...+.+.|+.++|.+++++
T Consensus 369 ~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 369 DANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888999999999999999999997
No 32
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.44 E-value=7.1e-10 Score=112.41 Aligned_cols=278 Identities=12% Similarity=0.053 Sum_probs=202.4
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHH
Q 037477 279 HESVRDFWNVVEEMKKEGYEMDIDT-YIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLV 357 (639)
Q Consensus 279 ~g~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~ 357 (639)
.|+++.|.+.+....+.. ++... |.....+..+.|+++.|.+.+.++.+. .|+...+..
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~---------------- 156 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVE---------------- 156 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHH----------------
Confidence 689999998887766542 22333 333344557889999999999988653 233221111
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037477 358 FRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEEN 437 (639)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 437 (639)
-.....+...|+++.|.+.++.+.+.. +-+......+...|.+.|++++|.+++..+.+.
T Consensus 157 -------------------l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~ 216 (398)
T PRK10747 157 -------------------ITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKA 216 (398)
T ss_pred -------------------HHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc
Confidence 112456778899999999999998876 446778888999999999999999999999987
Q ss_pred CCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCC
Q 037477 438 GCIPDI-------KTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRL 510 (639)
Q Consensus 438 ~~~p~~-------~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 510 (639)
+..++. .+|..++.......+.+...++|+.+.+. .+.+......+...+...|+.++|.+++++..+.
T Consensus 217 ~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--- 292 (398)
T PRK10747 217 HVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--- 292 (398)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---
Confidence 765322 13334444444555666677777776543 3457788888999999999999999999988764
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH----hHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHH
Q 037477 511 RPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPE----PFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQV 586 (639)
Q Consensus 511 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 586 (639)
.|+.. ..++.+....++.+++++..+...+. .|+.. ++..++...+++++|.+.|+...+. .|+...|..+
T Consensus 293 ~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~-~P~~~~~~~L 367 (398)
T PRK10747 293 QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ-RPDAYDYAWL 367 (398)
T ss_pred CCCHH--HHHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHH
Confidence 44432 22344455669999999999988864 34443 3455567889999999999999876 4677888899
Q ss_pred HHHHHhcCCHHHHHHHHhh
Q 037477 587 FESFFNEGRHYEAKDLLYK 605 (639)
Q Consensus 587 ~~~~~~~g~~~~A~~~~~~ 605 (639)
..++.+.|+.++|.+++++
T Consensus 368 a~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 368 ADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred HHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999987
No 33
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=3.3e-09 Score=101.82 Aligned_cols=219 Identities=13% Similarity=0.080 Sum_probs=176.9
Q ss_pred HHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 037477 383 LTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRA 462 (639)
Q Consensus 383 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a 462 (639)
+.-.|+.-.|..-|+........++ ..|--+..+|....+.++.+..|++..+.+.. |..+|..-.+.+.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence 3456888899999999887753332 23777888899999999999999999987654 667788888888888999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 463 LLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 463 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
..=|++.+... +-+...|..+..+.-+.+++++++..|++.++++.-. ...|+.....+...+++++|.+.|+...+
T Consensus 414 ~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~--~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 414 IADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC--PEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--chHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 99999998875 3356667777777778999999999999999985544 45888888899999999999999999886
Q ss_pred CC-----CCCChHhH----HHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 543 QN-----YPPFPEPF----VQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 543 ~~-----~~p~~~~~----~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
.. +..+...+ ..++.-.+++..|..++++..+.+|.....|..|...-.+.|+.++|+++|++-
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred hccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 21 11122222 122234489999999999999999999999999999999999999999999983
No 34
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.40 E-value=5.9e-09 Score=95.05 Aligned_cols=237 Identities=12% Similarity=0.124 Sum_probs=131.8
Q ss_pred cCCHHHHHHHHHHhccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC---HHHHH
Q 037477 229 ELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMD---IDTYI 305 (639)
Q Consensus 229 ~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~ 305 (639)
..+...+..+=.-+.+++++|.+.|-.|.+.. +-+..+--+|-+.|-+.|.+|.|+++.+.+.++.--+. ....-
T Consensus 34 ~lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~ 111 (389)
T COG2956 34 RLSRDYVKGLNFLLSNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQ 111 (389)
T ss_pred hccHHHHhHHHHHhhcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 34444444444445689999999999996421 23455667788889999999999999999987621111 23344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHc
Q 037477 306 KISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTK 385 (639)
Q Consensus 306 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 385 (639)
.|..-|...|-++.|..+|..+.+.|. .-...... ++..|-.
T Consensus 112 qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~Alqq-------------------------------------Ll~IYQ~ 153 (389)
T COG2956 112 QLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQ-------------------------------------LLNIYQA 153 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHH-------------------------------------HHHHHHH
Confidence 567778999999999999999987531 11222333 4444444
Q ss_pred cCChhHHHHHHHHHHHCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 037477 386 LGRFDEAEKMMKAMKNAGFEPDN----ITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDR 461 (639)
Q Consensus 386 ~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~ 461 (639)
..+|++|.++-+++.+.+-.+.. .-|..|...+....+++.|...+.+..+.+.+ .+..--.+.+.....|+++.
T Consensus 154 treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~ 232 (389)
T COG2956 154 TREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQK 232 (389)
T ss_pred hhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHH
Confidence 45555555555544444322221 12334444444444555555555554443211 11122223334444555555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 037477 462 ALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIE 506 (639)
Q Consensus 462 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (639)
|.+.|+...+.+..--..+...|..+|.+.|+.++...++..+.+
T Consensus 233 AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 233 AVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 555555555444333334444445555555555555555554444
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.40 E-value=4.6e-12 Score=122.60 Aligned_cols=258 Identities=17% Similarity=0.133 Sum_probs=108.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHc
Q 037477 306 KISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTK 385 (639)
Q Consensus 306 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 385 (639)
.+...+.+.|++++|+++++......-.|+.. ..|..+...+..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~------------------------------------~~~~~~a~La~~ 56 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDP------------------------------------EYWRLLADLAWS 56 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccc------------------------------------cccccccccccc
Confidence 44667778888888888885543321112221 223334445566
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 037477 386 LGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLC 465 (639)
Q Consensus 386 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~ 465 (639)
.++.+.|.+.++++...+. -+...+..++.. ...+++++|..++.+..+.. ++...+..++..+...++++++.++
T Consensus 57 ~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~ 132 (280)
T PF13429_consen 57 LGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEEL 132 (280)
T ss_dssp -----------------------------------------------------------------H-HHHTT-HHHHHHH
T ss_pred ccccccccccccccccccc-cccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHH
Confidence 7889999999999987652 355567777776 68999999999988776543 5667788888999999999999999
Q ss_pred HHHHHHcC-CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 037477 466 FAKMMEKN-YDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW-QATFKTLIEKLLGARRLEEAMNLLRLMKKQ 543 (639)
Q Consensus 466 ~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 543 (639)
++.+.... .+.+...|..+...+.+.|+.++|.+.+++..+. .|+ ......++..+...|+.+++.++++...+.
T Consensus 133 l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~ 209 (280)
T PF13429_consen 133 LEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA 209 (280)
T ss_dssp HHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 99987633 3567778888888999999999999999999876 454 667888899999999999999988888764
Q ss_pred C-CCCCh-HhHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 544 N-YPPFP-EPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 544 ~-~~p~~-~~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
. -.|.. ..+...+...|+.++|..+|++..+..|.|+.....+.+++...|+.++|.++.++.
T Consensus 210 ~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 210 APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp -HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------------
T ss_pred CcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3 22332 345566678899999999999999888999999999999999999999999998875
No 36
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.40 E-value=1.9e-09 Score=98.21 Aligned_cols=289 Identities=18% Similarity=0.216 Sum_probs=211.1
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHH
Q 037477 279 HESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVF 358 (639)
Q Consensus 279 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~ 358 (639)
..+.++|.++|-+|.+.. +-+..+--+|.+.|.+.|..+.|+++.+.+.++ ||... ..
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~------------------~q 105 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTF------------------EQ 105 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCch------------------HH
Confidence 568999999999999863 334555667899999999999999999998774 33211 11
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037477 359 RVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENG 438 (639)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 438 (639)
+++ ..-.+..-|...|-+|.|+++|..+.+.| .--......|+..|-+..+|++|+++-+++.+.+
T Consensus 106 r~l-------------Al~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~ 171 (389)
T COG2956 106 RLL-------------ALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLG 171 (389)
T ss_pred HHH-------------HHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC
Confidence 111 12236667888999999999999999765 3344567789999999999999999999998876
Q ss_pred CCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCH
Q 037477 439 CIPDI----KTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQ 514 (639)
Q Consensus 439 ~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~ 514 (639)
-.+.. ..|--+...+....+++.|...+++..+.+.+ .+..--.+-+.+...|+++.|.+.++.+.+. +..--.
T Consensus 172 ~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~ 249 (389)
T COG2956 172 GQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLS 249 (389)
T ss_pred CccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHH
Confidence 54432 23455566666678999999999999887522 2333345567888999999999999999887 333336
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH-hHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH--
Q 037477 515 ATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPE-PFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFF-- 591 (639)
Q Consensus 515 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-- 591 (639)
.+...|..+|.+.|+.++....+..+.+....++.. .+..++....-.+.|..++.+-... .|+...+..+++.-.
T Consensus 250 evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r-~Pt~~gf~rl~~~~l~d 328 (389)
T COG2956 250 EVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRR-KPTMRGFHRLMDYHLAD 328 (389)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh-CCcHHHHHHHHHhhhcc
Confidence 678889999999999999999999998865555543 2334444444455565555544443 467777777777654
Q ss_pred -hcCCHHHHHHHHhhC
Q 037477 592 -NEGRHYEAKDLLYKC 606 (639)
Q Consensus 592 -~~g~~~~A~~~~~~m 606 (639)
..|.+.+-+.++++|
T Consensus 329 aeeg~~k~sL~~lr~m 344 (389)
T COG2956 329 AEEGRAKESLDLLRDM 344 (389)
T ss_pred ccccchhhhHHHHHHH
Confidence 345678888888887
No 37
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=1.5e-10 Score=115.50 Aligned_cols=276 Identities=13% Similarity=0.069 Sum_probs=184.3
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC--CCCCHHHHHHHHHHHhhcCCCchhHHH
Q 037477 281 SVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGP--YKPSVQDCSLLLRSISSINNPDLGLVF 358 (639)
Q Consensus 281 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~~~~~ 358 (639)
+..+|...|.....+ +.-+.++...+..+|...+++++|.++|+.+.+.. ..-+...|.+.|-.+.+.. .
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v------~- 405 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV------A- 405 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH------H-
Confidence 467888888885554 34455777788899999999999999999887642 1224445555554332110 0
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037477 359 RVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENG 438 (639)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 438 (639)
+.. .|..+.+.+ +-.+.+|.++.++|.-.++.+.|++.|++..+.+
T Consensus 406 ---------------------Ls~--------Laq~Li~~~-----~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld 451 (638)
T KOG1126|consen 406 ---------------------LSY--------LAQDLIDTD-----PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD 451 (638)
T ss_pred ---------------------HHH--------HHHHHHhhC-----CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC
Confidence 000 122222222 3456778888888888888888888888877754
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHcCCChhHHHHHHHHHHHhCCCCCC-H
Q 037477 439 CIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLD---VLINGFLSQKRVNGAYKLLVEMIEKVRLRPW-Q 514 (639)
Q Consensus 439 ~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~ 514 (639)
.. ...+|+.+..-+....++|.|...|+..+.. |...|+ .|.-.|.++++++.|.-.|+...+ +.|. .
T Consensus 452 p~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~----~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~ns 523 (638)
T KOG1126|consen 452 PR-FAYAYTLLGHESIATEEFDKAMKSFRKALGV----DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNS 523 (638)
T ss_pred Cc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcC----CchhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccch
Confidence 22 5677777777777788888888888776643 333343 455567888888888888887754 4554 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhH--HHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 037477 515 ATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPF--VQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFN 592 (639)
Q Consensus 515 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~--~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 592 (639)
+....+...+-+.|+.++|++++++........-...| ..++...++.++|...++++.+..|.+..+|..+...|-+
T Consensus 524 vi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~ 603 (638)
T KOG1126|consen 524 VILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKR 603 (638)
T ss_pred hHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 44555556677778888888888887764332222223 3344566888888888888888888888888888888888
Q ss_pred cCCHHHHHHHHhhC
Q 037477 593 EGRHYEAKDLLYKC 606 (639)
Q Consensus 593 ~g~~~~A~~~~~~m 606 (639)
.|+.+.|+.-|.-+
T Consensus 604 ~~~~~~Al~~f~~A 617 (638)
T KOG1126|consen 604 LGNTDLALLHFSWA 617 (638)
T ss_pred HccchHHHHhhHHH
Confidence 88888887766553
No 38
>PF13041 PPR_2: PPR repeat family
Probab=99.37 E-value=1.3e-12 Score=88.36 Aligned_cols=50 Identities=16% Similarity=0.261 Sum_probs=48.7
Q ss_pred CChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 037477 127 PSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKK 176 (639)
Q Consensus 127 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~ 176 (639)
||+.+||++|++|++.|++++|+++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999874
No 39
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.36 E-value=8.2e-07 Score=88.73 Aligned_cols=467 Identities=12% Similarity=0.076 Sum_probs=292.7
Q ss_pred CChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHHH
Q 037477 107 NDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAAL 186 (639)
Q Consensus 107 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~ 186 (639)
.++++|+-++..+.+ . ++.+...|. +|++...++.|..++++.++. ++-+...|.+.-..=-..|..+.+..+
T Consensus 390 E~~~darilL~rAve-c-cp~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 390 EEPEDARILLERAVE-C-CPQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred cChHHHHHHHHHHHH-h-ccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 455557777777665 1 112334443 445555666677777666554 555666665555444455544443322
Q ss_pred HHH-HHHHhhhccch--h----------------HHHHHHHHHhcCCchHHHHHHHhhccCcCCHHHHHHHHHHhccChH
Q 037477 187 NQF-HDGMVKEIAMD--N----------------VAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKELRIYPV 247 (639)
Q Consensus 187 ~~~-~~~~~~~~~~~--~----------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 247 (639)
..- ...+...|..- + ...+++....+.|..++ ....+|....+.+.. ++..+
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEee--------d~~~tw~~da~~~~k-~~~~~ 533 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEE--------DRKSTWLDDAQSCEK-RPAIE 533 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccc--------hhHhHHhhhHHHHHh-cchHH
Confidence 110 11111111110 0 12233333322221110 011233333333322 34555
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 037477 248 KALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFM 327 (639)
Q Consensus 248 ~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m 327 (639)
-|..+|....+ -++-+...|......--..|..++...+|++.... ++-....|-....-+-..|+...|..++.+.
T Consensus 534 carAVya~alq--vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~a 610 (913)
T KOG0495|consen 534 CARAVYAHALQ--VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQA 610 (913)
T ss_pred HHHHHHHHHHh--hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 56666655532 23446667777776666677788888888887765 2445555666666677778888888888777
Q ss_pred hcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC
Q 037477 328 MDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPD 407 (639)
Q Consensus 328 ~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 407 (639)
.+..-. +...|-..++.-.... ..+.+..++.+... ..++..+|.--+..---.+..++|.+++++..+. -|+
T Consensus 611 f~~~pn-seeiwlaavKle~en~--e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~ 683 (913)
T KOG0495|consen 611 FEANPN-SEEIWLAAVKLEFEND--ELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPD 683 (913)
T ss_pred HHhCCC-cHHHHHHHHHHhhccc--cHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCc
Confidence 665322 4444544444443333 45566666655544 4566666666666666678899999999887765 444
Q ss_pred -HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037477 408 -NITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLIN 486 (639)
Q Consensus 408 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 486 (639)
...|-.+...+-+.++++.|...|..=.+. +.-.+..|-.+...=-+.|.+-+|..++++..-.+ +-|...|-..|.
T Consensus 684 f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir 761 (913)
T KOG0495|consen 684 FHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIR 761 (913)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHH
Confidence 345666667777888888888877665443 22245678888887788899999999999988776 457888999999
Q ss_pred HHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH-hHHHHHhhcCCHHHH
Q 037477 487 GFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPE-PFVQYISKFGTVEDA 565 (639)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~g~~~~a 565 (639)
+-.+.|..+.|..+.....+. ..-+...|..-|....+.++-....+.+++.. ..|... +...++-...+++.|
T Consensus 762 ~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce---~dphVllaia~lfw~e~k~~ka 836 (913)
T KOG0495|consen 762 MELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE---HDPHVLLAIAKLFWSEKKIEKA 836 (913)
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc---CCchhHHHHHHHHHHHHHHHHH
Confidence 999999999999998888775 33456678887877777777666555554433 334332 233444566789999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 566 SEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
.+.|.+..+..+.+-.+|..+...+.+.|.-++-.+++.++
T Consensus 837 r~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 837 REWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred HHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999888888888886
No 40
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.35 E-value=8.5e-09 Score=97.88 Aligned_cols=272 Identities=12% Similarity=0.061 Sum_probs=187.8
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHH-----HHHHc
Q 037477 311 FQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIH-----RALTK 385 (639)
Q Consensus 311 ~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li-----~~~~~ 385 (639)
|.++|+++.|++++.-..+..-+.-...-+.|-..+...+..+...+.+..+... +..-||.-. +....
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~al------n~dryn~~a~~nkgn~~f~ 502 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIAL------NIDRYNAAALTNKGNIAFA 502 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHh------cccccCHHHhhcCCceeee
Confidence 6677788888777777665432222222222222222222223333333322221 111222211 12234
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 037477 386 LGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLC 465 (639)
Q Consensus 386 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~ 465 (639)
.|++++|.+.+++.......-....||. --.+-..|++++|++.|-++..-- .-+..+...+...|....+...|.++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 6899999999999885432222222332 234667899999999998876421 13667778888899999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 037477 466 FAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNY 545 (639)
Q Consensus 466 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 545 (639)
+-+.... ++-|......|...|-+.|+-..|.+.+-+--+ -..-+..+..-|...|....-++++++.|++..- +
T Consensus 581 ~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--i 655 (840)
T KOG2003|consen 581 LMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--I 655 (840)
T ss_pred HHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--c
Confidence 8776654 566788899999999999999999888765443 2344677888888888888889999999998764 7
Q ss_pred CCChHhHHHHH----hhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC
Q 037477 546 PPFPEPFVQYI----SKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGR 595 (639)
Q Consensus 546 ~p~~~~~~~ll----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 595 (639)
.|+..-|..++ .+.|++..|..+++.+..+.|.+......|++.....|.
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 79988887776 466999999999999999999999999999999887774
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.35 E-value=1.5e-09 Score=110.02 Aligned_cols=223 Identities=12% Similarity=0.034 Sum_probs=177.0
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 037477 379 IHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYS--QVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAA 456 (639)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 456 (639)
...+..+.|+++.|.+.+.++.+. .|+...+. .....+...|++++|...++++.+.... +......+...|.+.
T Consensus 124 aA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~ 200 (398)
T PRK10747 124 AAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRT 200 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHH
Confidence 344557889999999999999875 55654333 3356888999999999999999987744 678888999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 037477 457 NEVDRALLCFAKMMEKNYDADA-------DLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARR 529 (639)
Q Consensus 457 g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 529 (639)
|++++|.+++..+.+.+..++. .+|..++.......+.+...++++.+.+. ...+......+..++...|+
T Consensus 201 gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~--~~~~~~~~~~~A~~l~~~g~ 278 (398)
T PRK10747 201 GAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK--TRHQVALQVAMAEHLIECDD 278 (398)
T ss_pred HhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH--HhCCHHHHHHHHHHHHHCCC
Confidence 9999999999999998755332 23344444444555667777888877654 24467788899999999999
Q ss_pred HHHHHHHHHHHHhCCCCCChHhHHHHHh--hcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037477 530 LEEAMNLLRLMKKQNYPPFPEPFVQYIS--KFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCP 607 (639)
Q Consensus 530 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 607 (639)
.++|.+++++..+. .|+. ....++. ..++.+++.+.++...+..|.++..+..+...+.+.|+|++|.+.|++..
T Consensus 279 ~~~A~~~L~~~l~~--~~~~-~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al 355 (398)
T PRK10747 279 HDTAQQIILDGLKR--QYDE-RLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAAL 355 (398)
T ss_pred HHHHHHHHHHHHhc--CCCH-HHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999873 3443 3333332 44999999999999999999999999999999999999999999999974
Q ss_pred cc
Q 037477 608 HH 609 (639)
Q Consensus 608 ~~ 609 (639)
..
T Consensus 356 ~~ 357 (398)
T PRK10747 356 KQ 357 (398)
T ss_pred hc
Confidence 43
No 42
>PF13041 PPR_2: PPR repeat family
Probab=99.35 E-value=2.2e-12 Score=87.29 Aligned_cols=50 Identities=24% Similarity=0.355 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 037477 264 HNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQK 313 (639)
Q Consensus 264 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 313 (639)
||+++||++|++|++.|++++|+++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888888888888888888888888888888888888888888887764
No 43
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.34 E-value=8.6e-12 Score=120.71 Aligned_cols=257 Identities=16% Similarity=0.190 Sum_probs=81.3
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhc
Q 037477 271 GILRVLARHESVRDFWNVVEEMKKEG-YEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSI 349 (639)
Q Consensus 271 ~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~ 349 (639)
.+...+.+.|++++|+++++...... .+.|...|..+.......+++++|++.++.+...+-. +.
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~------------- 78 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NP------------- 78 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc-------------
Confidence 45677788889999999886554443 2335555666666777788888888888888764211 11
Q ss_pred CCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 037477 350 NNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACN 429 (639)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 429 (639)
..+..++.. ...+++++|.+++...-+. .++...+..++..+...++++++..
T Consensus 79 ------------------------~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~ 131 (280)
T PF13429_consen 79 ------------------------QDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEE 131 (280)
T ss_dssp ------------------------------------------------------------------H-HHHTT-HHHHHH
T ss_pred ------------------------ccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHH
Confidence 123334433 4666777777776665443 3455556666677777777777777
Q ss_pred HHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhC
Q 037477 430 VLDEMEENG-CIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKV 508 (639)
Q Consensus 430 ~~~~m~~~~-~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 508 (639)
+++.+.... ...+...|..+...+.+.|+.++|.+.+++.++.. +-|....+.++..+...|+.+++..++....+..
T Consensus 132 ~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~ 210 (280)
T PF13429_consen 132 LLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA 210 (280)
T ss_dssp HHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 777765432 23455666677777777777777777777777663 2246666667777777777777777776665542
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH----hHHHHHhhcCCHHHHHHHHHHhh
Q 037477 509 RLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPE----PFVQYISKFGTVEDASEFLKALS 573 (639)
Q Consensus 509 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~g~~~~a~~~~~~~~ 573 (639)
..+...+..+..+|...|+.++|+..+++..+ ..|+.. .+..++...|+.++|..+.+++.
T Consensus 211 --~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~--~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 211 --PDDPDLWDALAAAYLQLGRYEEALEYLEKALK--LNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp --HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHT----------------
T ss_pred --cCHHHHHHHHHHHhcccccccccccccccccc--ccccccccccccccccccccccccccccccccc
Confidence 22233566666777777777777777777665 224332 33444456677777777666554
No 44
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.34 E-value=9.8e-09 Score=106.02 Aligned_cols=323 Identities=14% Similarity=0.106 Sum_probs=228.5
Q ss_pred hccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037477 242 LRIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAV 321 (639)
Q Consensus 242 ~~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 321 (639)
.+|+.++|.+++.++.++. +.+...|-+|...|-..|+.+++...+-..-... +-|...|..+.....+.|+++.|.
T Consensus 151 arg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHH
Confidence 3688888888888886543 5577888888889999998888887765554443 446788888888888888899888
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 037477 322 KLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKN 401 (639)
Q Consensus 322 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 401 (639)
-.|.+..+. .|+. ...+-.-+..|-+.|+...|..-|.++..
T Consensus 228 ~cy~rAI~~--~p~n------------------------------------~~~~~ers~L~~~~G~~~~Am~~f~~l~~ 269 (895)
T KOG2076|consen 228 YCYSRAIQA--NPSN------------------------------------WELIYERSSLYQKTGDLKRAMETFLQLLQ 269 (895)
T ss_pred HHHHHHHhc--CCcc------------------------------------hHHHHHHHHHHHHhChHHHHHHHHHHHHh
Confidence 888887764 2221 11122234567888999999999999887
Q ss_pred CCCCCCHHhHH----HHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--
Q 037477 402 AGFEPDNITYS----QVIFGLCKAGRFEDACNVLDEMEEN-GCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNY-- 474 (639)
Q Consensus 402 ~g~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-- 474 (639)
...+.|..-.. .++..+...++-+.|.+.++..... +-..+...+++++..|.+...++.|......+.....
T Consensus 270 ~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~ 349 (895)
T KOG2076|consen 270 LDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEK 349 (895)
T ss_pred hCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCC
Confidence 64322322222 3355566677778888888877652 2234566788888888888889988888877766222
Q ss_pred -------------------------CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc
Q 037477 475 -------------------------DADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVR--LRPWQATFKTLIEKLLGA 527 (639)
Q Consensus 475 -------------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~p~~~~~~~li~~~~~~ 527 (639)
.++... -.++-++.+....+....+..-..+. . +.-+...|.-+.++|.+.
T Consensus 350 d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~ 427 (895)
T KOG2076|consen 350 DDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNI 427 (895)
T ss_pred ChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhc
Confidence 222222 12223334444444444444444443 4 333467888999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCChHhH---HHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHh
Q 037477 528 RRLEEAMNLLRLMKKQNYPPFPEPF---VQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLY 604 (639)
Q Consensus 528 g~~~~A~~~~~~m~~~~~~p~~~~~---~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 604 (639)
|++.+|+.++..+......-+...| ...+...|..++|.+.++++....|.+..+-.+|...|.+.|+.++|.+.+.
T Consensus 428 ~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~ 507 (895)
T KOG2076|consen 428 GKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLE 507 (895)
T ss_pred ccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHh
Confidence 9999999999999875443333333 3344577999999999999999999999999999999999999999999999
Q ss_pred hCC
Q 037477 605 KCP 607 (639)
Q Consensus 605 ~m~ 607 (639)
.|-
T Consensus 508 ~~~ 510 (895)
T KOG2076|consen 508 QII 510 (895)
T ss_pred ccc
Confidence 974
No 45
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.33 E-value=9.4e-09 Score=96.73 Aligned_cols=281 Identities=14% Similarity=0.128 Sum_probs=213.7
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHH
Q 037477 279 HESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVF 358 (639)
Q Consensus 279 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~ 358 (639)
.|++.+|+++..+-.+.+ +-....|..-..+--..|+.+.+-.++.+..+.
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~---------------------------- 147 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL---------------------------- 147 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhcc----------------------------
Confidence 578888888887776665 223444556666666777777777777776543
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037477 359 RVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENG 438 (639)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 438 (639)
...++..++-+..+.....|+.+.|..-.+++.+.+ +.++........+|.+.|++..+..++..|.+.|
T Consensus 148 ---------~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~ 217 (400)
T COG3071 148 ---------AGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG 217 (400)
T ss_pred ---------CCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc
Confidence 122233345556677788899999999999988876 5567788899999999999999999999999988
Q ss_pred CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCC
Q 037477 439 CIPDI-------KTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLR 511 (639)
Q Consensus 439 ~~p~~-------~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 511 (639)
.--|. .+|+.+++-....+..+.-...|+..... .+-+...-.+++.-+..+|+.++|.++..+..++ +..
T Consensus 218 ~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D 295 (400)
T COG3071 218 LLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWD 295 (400)
T ss_pred CCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccC
Confidence 76554 46788888777777777766777776554 3556777778888999999999999999998887 555
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCChH-hHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 037477 512 PWQATFKTLIEKLLGARRLEEAMNLLRLMKK-QNYPPFPE-PFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFES 589 (639)
Q Consensus 512 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~-~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 589 (639)
|+ -+..-.+.+-++.+.-++..++-.+ .+..|+.. |+..++.+.+.+.+|..+|+...+ ..|+..+|..+.++
T Consensus 296 ~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~-~~~s~~~~~~la~~ 370 (400)
T COG3071 296 PR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALK-LRPSASDYAELADA 370 (400)
T ss_pred hh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCChhhHHHHHHH
Confidence 55 2223346677888877777776554 56666543 556666799999999999996665 47899999999999
Q ss_pred HHhcCCHHHHHHHHhh
Q 037477 590 FFNEGRHYEAKDLLYK 605 (639)
Q Consensus 590 ~~~~g~~~~A~~~~~~ 605 (639)
|.+.|+.++|.+..++
T Consensus 371 ~~~~g~~~~A~~~r~e 386 (400)
T COG3071 371 LDQLGEPEEAEQVRRE 386 (400)
T ss_pred HHHcCChHHHHHHHHH
Confidence 9999999999999887
No 46
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.32 E-value=1.3e-06 Score=87.40 Aligned_cols=449 Identities=13% Similarity=0.058 Sum_probs=224.9
Q ss_pred CCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHH
Q 037477 106 DNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAA 185 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~ 185 (639)
..+...-.+++....+. ++.++..|-..+. ....+.|..++....+- ++.+... .-++++..-++.+.
T Consensus 359 E~~~~~K~RVlRKALe~--iP~sv~LWKaAVe----lE~~~darilL~rAvec-cp~s~dL----wlAlarLetYenAk- 426 (913)
T KOG0495|consen 359 ESDTKNKKRVLRKALEH--IPRSVRLWKAAVE----LEEPEDARILLERAVEC-CPQSMDL----WLALARLETYENAK- 426 (913)
T ss_pred hhHHHHHHHHHHHHHHh--CCchHHHHHHHHh----ccChHHHHHHHHHHHHh-ccchHHH----HHHHHHHHHHHHHH-
Confidence 45555566777777662 3346667765443 34556688887777664 2333333 34455554444444
Q ss_pred HHHHHHHHhhhc-cchhHHHHHHHHHhcCCchHHHHHHHhhccCcCCHHHHHHHHHHhccChHHHHHHHHHHhccCCCCC
Q 037477 186 LNQFHDGMVKEI-AMDNVAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKH 264 (639)
Q Consensus 186 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p 264 (639)
.+++...+.- ..+.++..-..+--..|..+.+.+.+++- +.++ ...|+..
T Consensus 427 --kvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rg------------l~~L---------------~~ngv~i 477 (913)
T KOG0495|consen 427 --KVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRG------------LSEL---------------QANGVEI 477 (913)
T ss_pred --HHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH------------HHHH---------------hhcceee
Confidence 4455554432 22334433333333344444444444431 1111 2345555
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 037477 265 NTITYNGILRVLARHESVRDFWNVVEEMKKEGYEM--DIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLL 342 (639)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l 342 (639)
|...|-.=...|-+.|.+-.+..+......-|++- --.||..-...|.+.+.++-|..+|....+-- .-+...|...
T Consensus 478 ~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra 556 (913)
T KOG0495|consen 478 NRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRA 556 (913)
T ss_pred cHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHH
Confidence 55555555555555555555555555555544432 23456666666666666666666666555421 1112222221
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 037477 343 LRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAG 422 (639)
Q Consensus 343 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 422 (639)
.. .....+..+....++......- +-....|-....-+-..|++..|..++.+..+.. +.+...|-+-+..-..+.
T Consensus 557 ~~--~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~ 632 (913)
T KOG0495|consen 557 AM--FEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFEND 632 (913)
T ss_pred HH--HHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccc
Confidence 11 1111122333333333333221 1223334444445555666666666666666554 224556666666666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChhHHHHHH
Q 037477 423 RFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDAD-ADLLDVLINGFLSQKRVNGAYKLL 501 (639)
Q Consensus 423 ~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~ 501 (639)
++++|..+|.+.... .|+...|.--+..-.-.++.++|.+++++.++. -|+ ...|..+-+.+-+.++++.|...|
T Consensus 633 e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY 708 (913)
T KOG0495|consen 633 ELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAY 708 (913)
T ss_pred cHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 666666666666553 355555555555555566666666666666554 222 334445555566666666666665
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHH---hhcCCHHHHHHHHHHhhcCCC
Q 037477 502 VEMIEKVRLRPW-QATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYI---SKFGTVEDASEFLKALSVKEY 577 (639)
Q Consensus 502 ~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll---~~~g~~~~a~~~~~~~~~~~~ 577 (639)
..-.+. .|+ +..|-.+.+.=.+.|.+-+|..++++..-.+. -+..-|...+ .+.|+.+.|..+..+..+..|
T Consensus 709 ~~G~k~---cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp 784 (913)
T KOG0495|consen 709 LQGTKK---CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQECP 784 (913)
T ss_pred Hhcccc---CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 543322 222 33455555555556666666666666554321 1222333333 355666666665555555555
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHhhCCc
Q 037477 578 PSSAAYLQVFESFFNEGRHYEAKDLLYKCPH 608 (639)
Q Consensus 578 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 608 (639)
.+...|.--|....+.++-....+.++++.+
T Consensus 785 ~sg~LWaEaI~le~~~~rkTks~DALkkce~ 815 (913)
T KOG0495|consen 785 SSGLLWAEAIWLEPRPQRKTKSIDALKKCEH 815 (913)
T ss_pred ccchhHHHHHHhccCcccchHHHHHHHhccC
Confidence 5555554444444444444444444444433
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=7.3e-09 Score=98.94 Aligned_cols=260 Identities=13% Similarity=0.066 Sum_probs=199.5
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC-C-CCCHHHHHHHHHHHhhc
Q 037477 272 ILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGP-Y-KPSVQDCSLLLRSISSI 349 (639)
Q Consensus 272 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~-~p~~~~~~~ll~~~~~~ 349 (639)
+..++-...+.+++++-.+.....|.+.+...-+....+.....+++.|+.+|+++.++. . --|..+|..++-.- .
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~--~ 310 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK--N 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH--h
Confidence 345566666788888888888888877666665666666677888999999999988762 1 12455666655332 2
Q ss_pred CCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 037477 350 NNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACN 429 (639)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 429 (639)
....+.-..+..-.+ .+.-+.|+..+.+-|+-.++.++|...|++..+.+ +.....|+.+..-|....+...|++
T Consensus 311 ~~skLs~LA~~v~~i----dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 311 DKSKLSYLAQNVSNI----DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hhHHHHHHHHHHHHh----ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHH
Confidence 211111111111111 22334577778888999999999999999999876 4456789999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCC
Q 037477 430 VLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVR 509 (639)
Q Consensus 430 ~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 509 (639)
-++...+-... |-..|-.|.++|.-.+...-|+-.|++..+.. +-|...|.+|-++|.+.++.++|.+.|.....-.
T Consensus 386 sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~- 462 (559)
T KOG1155|consen 386 SYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG- 462 (559)
T ss_pred HHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-
Confidence 99999986543 88899999999999999999999999998864 5588999999999999999999999999988752
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 510 LRPWQATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 510 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
..+...|..+.+.|-+.++.++|.+.+.+..+
T Consensus 463 -dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 463 -DTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred -ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33567899999999999999999999988765
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.1e-07 Score=90.97 Aligned_cols=196 Identities=14% Similarity=0.060 Sum_probs=157.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037477 409 ITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGF 488 (639)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (639)
.|...+.+-|.-.++.++|...|++..+.+.. ....|+.+.+-|....+...|.+-+++.++-+ +.|-..|-.|-++|
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAY 408 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHH
Confidence 34555666777888999999999999987644 56789999999999999999999999999875 56888999999999
Q ss_pred HcCCChhHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh--HhHHHHHhhcCCHHHH
Q 037477 489 LSQKRVNGAYKLLVEMIEKVRLRP-WQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFP--EPFVQYISKFGTVEDA 565 (639)
Q Consensus 489 ~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~g~~~~a 565 (639)
.-.+...-|+-+|++... ++| |...|.+|-+.|.+.++.++|++.|+.....|-.-.. ..+..+..+.++.++|
T Consensus 409 eim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHH
Confidence 999999999999998865 345 5889999999999999999999999999875533111 2334556788999999
Q ss_pred HHHHHHhhcC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCcc
Q 037477 566 SEFLKALSVK-------EYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHH 609 (639)
Q Consensus 566 ~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 609 (639)
..++++..+. .+....+..-|..-+.+.+++++|..+..+....
T Consensus 486 a~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 486 AQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 9998877652 2223444555788889999999999877765433
No 49
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.31 E-value=1.7e-07 Score=88.40 Aligned_cols=259 Identities=13% Similarity=0.100 Sum_probs=180.8
Q ss_pred cChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037477 244 IYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKL 323 (639)
Q Consensus 244 ~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l 323 (639)
++.+.|-++..+..+..| .++...+-+........|+.+.|..-++.+.+.+ +-+.........+|.+.|++.....+
T Consensus 132 gd~~~an~yL~eaae~~~-~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~ 209 (400)
T COG3071 132 GDEDRANRYLAEAAELAG-DDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAI 209 (400)
T ss_pred ccHHHHHHHHHHHhccCC-CchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHH
Confidence 444455555555543322 4566677777788899999999999999998876 55778889999999999999999999
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCC
Q 037477 324 FEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAG 403 (639)
Q Consensus 324 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 403 (639)
...|.+.|+-.+... .++- ..+|+.+++-....+..+.-...++.....
T Consensus 210 l~~L~ka~~l~~~e~-------------------~~le-----------~~a~~glL~q~~~~~~~~gL~~~W~~~pr~- 258 (400)
T COG3071 210 LPKLRKAGLLSDEEA-------------------ARLE-----------QQAWEGLLQQARDDNGSEGLKTWWKNQPRK- 258 (400)
T ss_pred HHHHHHccCCChHHH-------------------HHHH-----------HHHHHHHHHHHhccccchHHHHHHHhccHH-
Confidence 999998876544321 1111 124555666655555555555566555433
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 037477 404 FEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDV 483 (639)
Q Consensus 404 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 483 (639)
.+.++..-.+++.-+..+|+.++|.++..+..+.+..|+.. ..-.+.+-++.+.-.+..++-.+.. +-+...+..
T Consensus 259 lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~t 333 (400)
T COG3071 259 LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLST 333 (400)
T ss_pred hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHH
Confidence 24455566677777888888888888888888777666522 2234456677766666666655532 234466777
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 037477 484 LINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQ 543 (639)
Q Consensus 484 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 543 (639)
|-..|.+.+.+.+|...|+...+ ..|+..+|+.+.+++.+.|+..+|.++.++....
T Consensus 334 LG~L~~k~~~w~kA~~~leaAl~---~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 334 LGRLALKNKLWGKASEALEAALK---LRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHh---cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 78888888888888888886654 4778888888888888888888888888876643
No 50
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.29 E-value=2.2e-09 Score=107.32 Aligned_cols=201 Identities=7% Similarity=-0.005 Sum_probs=159.5
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 037477 265 NTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLR 344 (639)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~ 344 (639)
...+|.++.++|.-.++.+.|++.|++..+.. +-..++|+.+..-+.....+|.|...|+..+ ..|...|++
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al----~~~~rhYnA--- 491 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKAL----GVDPRHYNA--- 491 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhh----cCCchhhHH---
Confidence 56799999999999999999999999998763 2278889999988999999999999998775 345555554
Q ss_pred HHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH
Q 037477 345 SISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRF 424 (639)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 424 (639)
|-.+...|.+.++++.|+-.|+...+.+ +.+.+....+...+-+.|+.
T Consensus 492 -------------------------------wYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~ 539 (638)
T KOG1126|consen 492 -------------------------------WYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRK 539 (638)
T ss_pred -------------------------------HHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhh
Confidence 3335667889999999999999888775 44667777788888899999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 037477 425 EDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEM 504 (639)
Q Consensus 425 ~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 504 (639)
|+|+.++++......+ |+..--..+..+...++.++|+..++++++. ++-+...|..+...|.+.|+.+.|+.-|..+
T Consensus 540 d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A 617 (638)
T KOG1126|consen 540 DKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWA 617 (638)
T ss_pred hHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHH
Confidence 9999999998876554 5555555667777888999999999998876 2334566777778899999999999888887
Q ss_pred HHh
Q 037477 505 IEK 507 (639)
Q Consensus 505 ~~~ 507 (639)
.+-
T Consensus 618 ~~l 620 (638)
T KOG1126|consen 618 LDL 620 (638)
T ss_pred hcC
Confidence 653
No 51
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.28 E-value=3.4e-08 Score=100.77 Aligned_cols=290 Identities=13% Similarity=0.038 Sum_probs=144.5
Q ss_pred HhccChHHHHHHHHHHhccCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 037477 241 ELRIYPVKALGFFRWVGEHSGYKHN-TITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMED 319 (639)
Q Consensus 241 ~~~~~~~~A~~~f~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 319 (639)
...|+++.|.+.+....+ ..|+ ...+-.....+.+.|+.+.|.+.+.+..+..-.+.....-.....+...|+++.
T Consensus 95 ~~~g~~~~A~~~l~~~~~---~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNAD---HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HhCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHH
Confidence 335777777777766532 2343 233334455666777777777777777654212222233334666677777777
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHH
Q 037477 320 AVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAM 399 (639)
Q Consensus 320 a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (639)
|...++.+.+.. |+ +..++..+...+...|++++|.+++..+
T Consensus 172 Al~~l~~l~~~~--P~------------------------------------~~~~l~ll~~~~~~~~d~~~a~~~l~~l 213 (409)
T TIGR00540 172 ARHGVDKLLEMA--PR------------------------------------HKEVLKLAEEAYIRSGAWQALDDIIDNM 213 (409)
T ss_pred HHHHHHHHHHhC--CC------------------------------------CHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 777777776542 22 1123334555566666666666666666
Q ss_pred HHCCCCCCHHhHH-HHHHHH---HhcCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 037477 400 KNAGFEPDNITYS-QVIFGL---CKAGRFEDACNVLDEMEENGC---IPDIKTWTILIQGHCAANEVDRALLCFAKMMEK 472 (639)
Q Consensus 400 ~~~g~~~~~~~~~-~li~~~---~~~g~~~~A~~~~~~m~~~~~---~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 472 (639)
.+.++. +...+. .-..++ ...+..+++.+.+..+.+... +.+...+..+...+...|+.++|.+++++..+.
T Consensus 214 ~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~ 292 (409)
T TIGR00540 214 AKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK 292 (409)
T ss_pred HHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Confidence 665533 222221 111111 222222222333333333221 125556666666666666666666666666654
Q ss_pred CCCCCHHHH-HHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHh
Q 037477 473 NYDADADLL-DVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEP 551 (639)
Q Consensus 473 g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 551 (639)
........+ ....-.....++.+.+.+.++...+...-.|+.....++-..|.+.|++++|.+.|+........|+...
T Consensus 293 ~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~ 372 (409)
T TIGR00540 293 LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND 372 (409)
T ss_pred CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH
Confidence 321111110 1111112233555566666665554433333213344555566666666666666664332223444433
Q ss_pred H---HHHHhhcCCHHHHHHHHHHh
Q 037477 552 F---VQYISKFGTVEDASEFLKAL 572 (639)
Q Consensus 552 ~---~~ll~~~g~~~~a~~~~~~~ 572 (639)
+ ..++.+.|+.++|.+++++.
T Consensus 373 ~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 373 LAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2 33335566666666666654
No 52
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.20 E-value=4.3e-06 Score=80.59 Aligned_cols=360 Identities=13% Similarity=0.114 Sum_probs=245.4
Q ss_pred cChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037477 244 IYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKL 323 (639)
Q Consensus 244 ~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l 323 (639)
++...|..+|.+-. ...|+..+|++.|+.=.+-+.++.|..+++...-. .|++.+|-.....=-+.|....+..+
T Consensus 155 gNi~gaRqiferW~---~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 155 GNIAGARQIFERWM---EWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred cccHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 44556777776553 46899999999999999999999999999998865 69999999988888899999999999
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHhhcC--CCchhHHHHHHHHHHhcC-CCCChhhHHHHHHHHHccCChhHHHHH-----
Q 037477 324 FEFMMDGPYKPSVQDCSLLLRSISSIN--NPDLGLVFRVANKYESLG-NSLSKSVYDGIHRALTKLGRFDEAEKM----- 395 (639)
Q Consensus 324 ~~~m~~~g~~p~~~~~~~ll~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~----- 395 (639)
|+...+. -.|...-..++.+++.-. ..+.+.+..++.-....- .......|.....-=-+-|+.....+.
T Consensus 230 yerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 230 YERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 9887653 122333333444443211 112233333333222211 111234455454444455665444333
Q ss_pred ---HHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHH--------HHHHHcCCHHHH
Q 037477 396 ---MKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDI--KTWTILI--------QGHCAANEVDRA 462 (639)
Q Consensus 396 ---~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~t~~~li--------~~~~~~g~~~~a 462 (639)
++.+...+ +-|-.+|-..++.-...|+.+...++|++.+.. +.|-. ..|..-| -.=....+++.+
T Consensus 308 k~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 308 KFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 34444443 456677888888888889999999999998864 33311 1222211 111356789999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHH----cCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037477 463 LLCFAKMMEKNYDADADLLDVLINGFL----SQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLR 538 (639)
Q Consensus 463 ~~~~~~m~~~g~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 538 (639)
.++++..++. ++....||.-+--+|+ ++.++..|.+++.... |..|...+|...|..=.+.+.++.+..+++
T Consensus 386 r~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 386 RQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999884 4556677776655554 6788999999998775 778888899999999999999999999999
Q ss_pred HHHhCCCCCChH-h---HHHHHhhcCCHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCcccc-
Q 037477 539 LMKKQNYPPFPE-P---FVQYISKFGTVEDASEFLKALSVK--EYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHHIR- 611 (639)
Q Consensus 539 ~m~~~~~~p~~~-~---~~~ll~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~- 611 (639)
+..+-+ |... + |..+-...|+.+.|..+|....+. .......|...|+.=...|.++.|..++++......
T Consensus 462 kfle~~--Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h 539 (677)
T KOG1915|consen 462 KFLEFS--PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH 539 (677)
T ss_pred HHHhcC--hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc
Confidence 999843 5432 3 333446789999999999988765 223445677777777889999999999998633322
Q ss_pred CChhHHH
Q 037477 612 QDSKISL 618 (639)
Q Consensus 612 ~~~~~~~ 618 (639)
...|+++
T Consensus 540 ~kvWisF 546 (677)
T KOG1915|consen 540 VKVWISF 546 (677)
T ss_pred chHHHhH
Confidence 2245554
No 53
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.19 E-value=4.2e-07 Score=86.65 Aligned_cols=428 Identities=11% Similarity=0.121 Sum_probs=254.6
Q ss_pred CCChHHHHHHHHHHhhcCC-CCCC--hHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhh
Q 037477 106 DNDPEKASAFFNWVCDKKQ-FRPS--STVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASD 182 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~-~~~~--~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~ 182 (639)
...+..|++++.....+-+ +..+ ....|.+--.+.+.|+++.|+..|+...+.. |+..+-..|+-.+..-| +
T Consensus 250 kr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~---d 324 (840)
T KOG2003|consen 250 KREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIG---D 324 (840)
T ss_pred hhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecC---c
Confidence 4789999999998877421 1111 1234444445778999999999999887764 77666444444433343 6
Q ss_pred HHHHHHHHHHHhhhccc----------hhHHHHHHHHHhcCCc--------hHHHHHHHhhc-----c-CcC----CHHH
Q 037477 183 LAALNQFHDGMVKEIAM----------DNVAKTLVDVVLGSDW--------DDKIGKKLEDM-----K-IEL----SDNF 234 (639)
Q Consensus 183 ~~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~--------~~~~~~~~~~~-----~-~~~----~~~~ 234 (639)
++..++.|..++.-... ++.-..|++--.+... -..+++.+-.. + +.+ .+.+
T Consensus 325 ~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dw 404 (840)
T KOG2003|consen 325 AEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDW 404 (840)
T ss_pred HHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHH
Confidence 66677777777653111 0111122221111111 11111111111 0 111 1122
Q ss_pred HHHHHHHhccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-Hh
Q 037477 235 VLTVLKELRIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQF-QK 313 (639)
Q Consensus 235 ~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~-~~ 313 (639)
.+..+... .+.+.|. +.. .| -..-|.+.|+++.|.+++.-+.+..-+.-...-+.|-..+ .+
T Consensus 405 cle~lk~s-~~~~la~--------------dle-i~-ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flq 467 (840)
T KOG2003|consen 405 CLESLKAS-QHAELAI--------------DLE-IN-KAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQ 467 (840)
T ss_pred HHHHHHHh-hhhhhhh--------------hhh-hh-HHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHh
Confidence 22222211 1111111 110 11 1234678888888888888877664222222223332222 22
Q ss_pred -cCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhc-----CCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC
Q 037477 314 -FRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSI-----NNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLG 387 (639)
Q Consensus 314 -~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 387 (639)
-.++..|.++-+..+.. .-||.. +.... .++|.+.+...+.+.......-....||.=+ .+-..|
T Consensus 468 ggk~~~~aqqyad~aln~------dryn~~--a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~ 538 (840)
T KOG2003|consen 468 GGKDFADAQQYADIALNI------DRYNAA--ALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALG 538 (840)
T ss_pred cccchhHHHHHHHHHhcc------cccCHH--HhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhc
Confidence 34567777766655432 112211 11111 1345666666666655443333333444322 456789
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 037477 388 RFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFA 467 (639)
Q Consensus 388 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 467 (639)
++++|++.|-.+... +..+..+...+...|-...+...|++++.+.... +..|+...+.|...|-+.|+-..|.+++-
T Consensus 539 ~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~y 616 (840)
T KOG2003|consen 539 NLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHY 616 (840)
T ss_pred CHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhh
Confidence 999999998776532 1345667777888899999999999998776543 33477889999999999999999998876
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCC
Q 037477 468 KMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLL-GARRLEEAMNLLRLMKKQNYP 546 (639)
Q Consensus 468 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~ 546 (639)
+--.. ++.+..+...|...|....-+++++.+|+... -+.|+..-|..||..|. +.|++++|.++++...+. ++
T Consensus 617 dsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa---liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fp 691 (840)
T KOG2003|consen 617 DSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA---LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FP 691 (840)
T ss_pred hcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH---hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-Cc
Confidence 55443 46688888889889999999999999999864 57999999999987665 589999999999998764 55
Q ss_pred CChHhHHHHHhhcCCH--HHHHHHHHH
Q 037477 547 PFPEPFVQYISKFGTV--EDASEFLKA 571 (639)
Q Consensus 547 p~~~~~~~ll~~~g~~--~~a~~~~~~ 571 (639)
-|...+.-+..-+|++ .++.++-++
T Consensus 692 edldclkflvri~~dlgl~d~key~~k 718 (840)
T KOG2003|consen 692 EDLDCLKFLVRIAGDLGLKDAKEYADK 718 (840)
T ss_pred cchHHHHHHHHHhccccchhHHHHHHH
Confidence 5655555555444443 334444333
No 54
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.19 E-value=1.8e-09 Score=110.72 Aligned_cols=250 Identities=16% Similarity=0.160 Sum_probs=170.9
Q ss_pred ccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHH
Q 037477 258 EHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQ 337 (639)
Q Consensus 258 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ 337 (639)
+..|+.||.+||..+|.-|+..|+.+.|- +|.-|.-+..+.+...|+.++.+....++.+.+. .|...
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aD 84 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLAD 84 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchh
Confidence 46799999999999999999999999999 9999998888889999999999988888887765 68889
Q ss_pred HHHHHHHHHhhcCCCc-hhHHHHHHHH----HHhcCCCCChhhHH--------------HHHHHHHccCChhHHHHHHHH
Q 037477 338 DCSLLLRSISSINNPD-LGLVFRVANK----YESLGNSLSKSVYD--------------GIHRALTKLGRFDEAEKMMKA 398 (639)
Q Consensus 338 ~~~~ll~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~--------------~li~~~~~~g~~~~A~~~~~~ 398 (639)
||+.|+.+|...|+.. .+.+.+.+.. +...|+......+- ..+.-....|-++.+++++..
T Consensus 85 tyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~ 164 (1088)
T KOG4318|consen 85 TYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAK 164 (1088)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999877433 2222221111 11122211111111 111222223333444444333
Q ss_pred HHHCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 037477 399 MKNAGFEPDNITYSQVIFGLCKAG-RFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDAD 477 (639)
Q Consensus 399 m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 477 (639)
+...... . +...+++-+.... .+++-..+-....+ .|+..+|..++..-...|+++.|..++.+|.+.|++.+
T Consensus 165 ~Pvsa~~-~--p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 165 VPVSAWN-A--PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred CCccccc-c--hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence 3211100 0 0111233333322 23333333333332 48999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 037477 478 ADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARR 529 (639)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 529 (639)
..-|..|+-+ .++...+..+...|.+. |+.|+..|+...+..+..+|.
T Consensus 239 ~HyFwpLl~g---~~~~q~~e~vlrgmqe~-gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 239 AHYFWPLLLG---INAAQVFEFVLRGMQEK-GVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cccchhhhhc---CccchHHHHHHHHHHHh-cCCCCcchhHHHHHhhhcchh
Confidence 9988888866 78888888888888887 999999999988888887665
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.18 E-value=1.2e-08 Score=96.03 Aligned_cols=192 Identities=17% Similarity=0.108 Sum_probs=89.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 037477 411 YSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLS 490 (639)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (639)
+..+...|...|++++|...+++..+... .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+..
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~ 111 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQ 111 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 34444444444555555555444443321 123344444444455555555555555444432 2233344444444555
Q ss_pred CCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-Hh---HHHHHhhcCCHHHHH
Q 037477 491 QKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFP-EP---FVQYISKFGTVEDAS 566 (639)
Q Consensus 491 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~---~~~ll~~~g~~~~a~ 566 (639)
.|++++|...|++..+..........+..+...+...|++++|.+.+++..+.. |+. .. +..++...|+.++|.
T Consensus 112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 112 QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--PQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCChHHHHHHHHHHHHcCCHHHHH
Confidence 555555555555544321111122234444444555555555555555554421 211 11 112223445555555
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 567 EFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
.++++..+..+.+...+..+...+...|+.++|..+.+.+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5555555444445555555566666666666666665543
No 56
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.17 E-value=6.4e-06 Score=79.47 Aligned_cols=463 Identities=10% Similarity=0.067 Sum_probs=247.6
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCh-HHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHH
Q 037477 106 DNDPEKASAFFNWVCDKKQFRPSS-TVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLA 184 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~ 184 (639)
++....|..+|+.+.... |-+ ..|---+..=-..|++..|.++|+.-.+- .||...|.+.|+.=.+.+ +..
T Consensus 120 nk~vNhARNv~dRAvt~l---PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRyk---eie 191 (677)
T KOG1915|consen 120 NKQVNHARNVWDRAVTIL---PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYK---EIE 191 (677)
T ss_pred hhhHhHHHHHHHHHHHhc---chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhh---HHH
Confidence 345566666666655522 222 23333333333445666666666655443 466666666666555553 333
Q ss_pred HHHHHHHHHhhhccchhHHHHHHHHHhcCCchHHHHHHHhhc----cCcCCHHHHHHHH---HHhccChHHHHHHHHHHh
Q 037477 185 ALNQFHDGMVKEIAMDNVAKTLVDVVLGSDWDDKIGKKLEDM----KIELSDNFVLTVL---KELRIYPVKALGFFRWVG 257 (639)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l---~~~~~~~~~A~~~f~~~~ 257 (639)
.+..+|+..+-..+....+-.....=-+.|....+..++... +...-...+.-.+ ...+...+.|.-+|.-..
T Consensus 192 raR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAl 271 (677)
T KOG1915|consen 192 RARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYAL 271 (677)
T ss_pred HHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455554443333223333333334444444333333322 2111111111111 222344556666666554
Q ss_pred ccCCCCCC--HHHHHHHHHHHHcCCChhHHHHH--------HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 037477 258 EHSGYKHN--TITYNGILRVLARHESVRDFWNV--------VEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFM 327 (639)
Q Consensus 258 ~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~--------~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m 327 (639)
+. ++.+ ...|......=-+-|+.....+. ++.+.+.+ +-|-.+|-..+..--..|+.+...++|+..
T Consensus 272 d~--~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErA 348 (677)
T KOG1915|consen 272 DH--IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERA 348 (677)
T ss_pred Hh--cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 22 2222 44555555444455554433332 34444443 557778877788777888999999999888
Q ss_pred hcCCCCCCH--HHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 037477 328 MDGPYKPSV--QDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFE 405 (639)
Q Consensus 328 ~~~g~~p~~--~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 405 (639)
... ++|-. ..|.-.|-.. .|-.+-.=....|++.+.++++...+. ++
T Consensus 349 Ian-vpp~~ekr~W~RYIYLW-----------------------------inYalyeEle~ed~ertr~vyq~~l~l-IP 397 (677)
T KOG1915|consen 349 IAN-VPPASEKRYWRRYIYLW-----------------------------INYALYEELEAEDVERTRQVYQACLDL-IP 397 (677)
T ss_pred Hcc-CCchhHHHHHHHHHHHH-----------------------------HHHHHHHHHHhhhHHHHHHHHHHHHhh-cC
Confidence 764 33311 0011100000 000111112346677777777776663 34
Q ss_pred CCHHhHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 037477 406 PDNITYSQVIFGL----CKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLL 481 (639)
Q Consensus 406 ~~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 481 (639)
....|+.-+=-+| .+..++..|.+++...+. .-|-..+|..-|..=.+.+++|.+..++++.++.+ +-|..+|
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W 474 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAW 474 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHH
Confidence 4445554443333 356677777777776553 34677777777777777888888888888887765 3466666
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChHhHHHHHh---
Q 037477 482 DVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQ-NYPPFPEPFVQYIS--- 557 (639)
Q Consensus 482 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~--- 557 (639)
......-...|+.+.|..+|.-......+......|-+.|+-=...|.+++|..+++.+.+. ...+.+.+|..+-.
T Consensus 475 ~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~ 554 (677)
T KOG1915|consen 475 SKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASAS 554 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhcccc
Confidence 66666666778888888888777665334444556666666666778888888888877762 23333334433321
Q ss_pred --hcC-----------CHHHHHHHHHHhhcC--CCCCHHHHHHHHHH----HHhcCCHHHHHHHHhhCCccccCC
Q 037477 558 --KFG-----------TVEDASEFLKALSVK--EYPSSAAYLQVFES----FFNEGRHYEAKDLLYKCPHHIRQD 613 (639)
Q Consensus 558 --~~g-----------~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~----~~~~g~~~~A~~~~~~m~~~~~~~ 613 (639)
+.| .+..|..+|+..... ...+.+--..|+.+ =...|...+...+-.+||+.+.+.
T Consensus 555 ~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk~vKKr 629 (677)
T KOG1915|consen 555 EGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPKKVKKR 629 (677)
T ss_pred ccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccHHHHhh
Confidence 223 556677777766543 11112322233333 344566666666666777665554
No 57
>PRK12370 invasion protein regulator; Provisional
Probab=99.15 E-value=3.8e-08 Score=104.43 Aligned_cols=215 Identities=10% Similarity=0.011 Sum_probs=104.6
Q ss_pred hHHHHHHHHHHhccCCCCC-CHHHHHHHHHHHH---------cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 037477 246 PVKALGFFRWVGEHSGYKH-NTITYNGILRVLA---------RHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFR 315 (639)
Q Consensus 246 ~~~A~~~f~~~~~~~~~~p-~~~~~~~li~~~~---------~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 315 (639)
.++|+.+|++..+. .| +...|..+..++. ..+++++|...+++..+.. +-+...+..+...+...|
T Consensus 277 ~~~A~~~~~~Al~l---dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 277 LQQALKLLTQCVNM---SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 45677777766432 33 3344444443332 2233566666666666553 335555666666666666
Q ss_pred CHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHH
Q 037477 316 MMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKM 395 (639)
Q Consensus 316 ~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 395 (639)
++++|...|++..+. .|+ +...+..+..++...|++++|...
T Consensus 353 ~~~~A~~~~~~Al~l--~P~------------------------------------~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 353 EYIVGSLLFKQANLL--SPI------------------------------------SADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred CHHHHHHHHHHHHHh--CCC------------------------------------CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 666666666665442 121 112233344455556666666666
Q ss_pred HHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 037477 396 MKAMKNAGFEPD-NITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNY 474 (639)
Q Consensus 396 ~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 474 (639)
+++..+.. |+ ...+..++..+...|++++|...+++..+....-+...+..+...+...|+.++|...+.++....
T Consensus 395 ~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~- 471 (553)
T PRK12370 395 INECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE- 471 (553)
T ss_pred HHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-
Confidence 66665542 22 112222333344455666666666555443211123334445555556666666666665544331
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 037477 475 DADADLLDVLINGFLSQKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 475 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (639)
..+....+.+...|...| +.|...++.+.+.
T Consensus 472 ~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 472 ITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred chhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 112222333333444444 3555555554443
No 58
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.14 E-value=4.6e-08 Score=91.95 Aligned_cols=198 Identities=13% Similarity=0.092 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 037477 266 TITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRS 345 (639)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~ 345 (639)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. |+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~---------- 97 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PN---------- 97 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC----------
Confidence 4555666666666777777777776665542 3345555666666666666666666666554321 10
Q ss_pred HhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCC-CCHHhHHHHHHHHHhcCCH
Q 037477 346 ISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFE-PDNITYSQVIFGLCKAGRF 424 (639)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~ 424 (639)
+...+..+...+...|++++|.+.+++....... .....+..+...+...|++
T Consensus 98 --------------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 151 (234)
T TIGR02521 98 --------------------------NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDF 151 (234)
T ss_pred --------------------------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCH
Confidence 1112333444455555555555555555442111 1122333344444455555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 037477 425 EDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEM 504 (639)
Q Consensus 425 ~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 504 (639)
++|...+.+..+.... +...+..+...+...|++++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+
T Consensus 152 ~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 152 DKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5555555554443211 2334444444444445555554444444443 1223333333444444444444444444433
No 59
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.10 E-value=1.6e-05 Score=79.66 Aligned_cols=432 Identities=11% Similarity=0.110 Sum_probs=226.7
Q ss_pred CCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHH
Q 037477 106 DNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAA 185 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~ 185 (639)
+++....++.|+.+....++......|...|...-..+-++-++.+|+.-.+. ++..-.--|..++..++++++.
T Consensus 115 Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa- 189 (835)
T KOG2047|consen 115 QGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAA- 189 (835)
T ss_pred cchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHH-
Confidence 45666666666666665555555566666666666666666666666666553 3333555556666666555543
Q ss_pred HHHHHHHHhhhccchhHHHHHHHHHhcCC--chHHHHHHHhhccCcCCHHHHHHHHHHhccChHHHHHHHHHHhccCCCC
Q 037477 186 LNQFHDGMVKEIAMDNVAKTLVDVVLGSD--WDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYK 263 (639)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~ 263 (639)
+.+..++......+ .+++.. ...+..+.+.+.+.......+ -.+++.+. +.-
T Consensus 190 --~~la~vln~d~f~s-------k~gkSn~qlw~elcdlis~~p~~~~slnv--------------daiiR~gi---~rf 243 (835)
T KOG2047|consen 190 --QRLATVLNQDEFVS-------KKGKSNHQLWLELCDLISQNPDKVQSLNV--------------DAIIRGGI---RRF 243 (835)
T ss_pred --HHHHHhcCchhhhh-------hcccchhhHHHHHHHHHHhCcchhcccCH--------------HHHHHhhc---ccC
Confidence 22333322111000 000000 000111111111111111111 22232221 112
Q ss_pred CC--HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh--cCCCCCCHHHH
Q 037477 264 HN--TITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMM--DGPYKPSVQDC 339 (639)
Q Consensus 264 p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~--~~g~~p~~~~~ 339 (639)
+| ...|++|.+.|.+.|.++.|.++|++.... ..++.-|+.+.++|+....-.-+..+= +. +.|-.-+...+
T Consensus 244 tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me--~a~~~~~n~ed~~dl 319 (835)
T KOG2047|consen 244 TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME--LADEESGNEEDDVDL 319 (835)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh--hhhhcccChhhhhhH
Confidence 33 357999999999999999999999998776 345666777777776533222111111 10 11111111111
Q ss_pred -------HHHHH-------H-HhhcCC--------------CchhHHHHHHHHHHhcCC-----CCChhhHHHHHHHHHc
Q 037477 340 -------SLLLR-------S-ISSINN--------------PDLGLVFRVANKYESLGN-----SLSKSVYDGIHRALTK 385 (639)
Q Consensus 340 -------~~ll~-------~-~~~~~~--------------~~~~~~~~~~~~~~~~~~-----~~~~~~~~~li~~~~~ 385 (639)
..++. . +.+... .+.++....+.+..+.-. ..-...|..+...|-.
T Consensus 320 ~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~ 399 (835)
T KOG2047|consen 320 ELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYEN 399 (835)
T ss_pred HHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHh
Confidence 11111 0 111111 112222223333222111 0112457888889999
Q ss_pred cCChhHHHHHHHHHHHCCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----------CCC-------CHHH
Q 037477 386 LGRFDEAEKMMKAMKNAGFEPD---NITYSQVIFGLCKAGRFEDACNVLDEMEENG----------CIP-------DIKT 445 (639)
Q Consensus 386 ~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----------~~p-------~~~t 445 (639)
.|+++.|..+|++..+...+-- ..+|..-..+=.+..+++.|+++.+.....- -.| +...
T Consensus 400 ~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlki 479 (835)
T KOG2047|consen 400 NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKI 479 (835)
T ss_pred cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHH
Confidence 9999999999999886543321 2355555566667788888888887764321 111 3445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 037477 446 WTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW-QATFKTLIEKL 524 (639)
Q Consensus 446 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~ 524 (639)
|...++.--..|-++....+++++++..+.......| ...-+-.+.-++++.+++++-..-+. -|+ -..|+..+.-+
T Consensus 480 Ws~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk-~p~v~diW~tYLtkf 557 (835)
T KOG2047|consen 480 WSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFK-WPNVYDIWNTYLTKF 557 (835)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCC-CccHHHHHHHHHHHH
Confidence 6666777777888889999999998876532222222 11123344456778887775443321 233 23455555444
Q ss_pred Hh---cCCHHHHHHHHHHHHhCCCCCChH-hHHHHH----hhcCCHHHHHHHHHHhhcC
Q 037477 525 LG---ARRLEEAMNLLRLMKKQNYPPFPE-PFVQYI----SKFGTVEDASEFLKALSVK 575 (639)
Q Consensus 525 ~~---~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll----~~~g~~~~a~~~~~~~~~~ 575 (639)
.+ ..+++.|..+|++..+ |++|... |+-.++ ...|....|..++++....
T Consensus 558 i~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 558 IKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA 615 (835)
T ss_pred HHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 33 3467888999998888 6766554 332233 2446666666666654443
No 60
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.10 E-value=6.1e-08 Score=98.06 Aligned_cols=234 Identities=16% Similarity=0.129 Sum_probs=167.9
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHC-----CC-CCCHHh-HHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC
Q 037477 373 KSVYDGIHRALTKLGRFDEAEKMMKAMKNA-----GF-EPDNIT-YSQVIFGLCKAGRFEDACNVLDEMEEN-----GCI 440 (639)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~ 440 (639)
..+...+..+|...|+++.|+.+++...+. |. .|...+ .+.+...|...+++++|..+|+++..- |-.
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 346666899999999999999999987754 21 233332 344677889999999999999998642 322
Q ss_pred -C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCC-CCCH-HHHHHHHHHHHcCCChhHHHHHHHHHHHhCC--
Q 037477 441 -P-DIKTWTILIQGHCAANEVDRALLCFAKMME-----KNY-DADA-DLLDVLINGFLSQKRVNGAYKLLVEMIEKVR-- 509 (639)
Q Consensus 441 -p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-- 509 (639)
| -..+++.|...|.+.|++++|...+++..+ .|. .|.+ ..++.+...|...+++++|..+++...+.+-
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 2 234677788889999999999988887765 122 2222 2355667788999999999999987665422
Q ss_pred CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC--CCChH-hH---HHHHhhcCCHHHHHHHHHHhhcC
Q 037477 510 LRPW----QATFKTLIEKLLGARRLEEAMNLLRLMKKQ----NY--PPFPE-PF---VQYISKFGTVEDASEFLKALSVK 575 (639)
Q Consensus 510 ~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~--~p~~~-~~---~~ll~~~g~~~~a~~~~~~~~~~ 575 (639)
..++ ..+|+.|-..|...|++++|.+++++.... +- .+... .+ ...+.+.+..++|.++|.+....
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 458899999999999999999999988752 11 12211 22 22234667777777776654322
Q ss_pred -------CCCCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 576 -------EYPSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 576 -------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
.|....+|..|...|.+.|++++|.++.++.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 4455678999999999999999999998773
No 61
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.1e-06 Score=84.62 Aligned_cols=242 Identities=12% Similarity=0.076 Sum_probs=174.7
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 037477 376 YDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCA 455 (639)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~ 455 (639)
+-.-|.++...|+..+-..+=.+|.+.- +....+|-++.--|...|+..+|.+.|.+...-... =...|-.+...|+-
T Consensus 281 ~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~ 358 (611)
T KOG1173|consen 281 LPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAG 358 (611)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhh
Confidence 3344556777777777777777777763 445788988888888889999999999887654322 24678888899999
Q ss_pred cCCHHHHHHHHHHHHHc--CC-CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHH
Q 037477 456 ANEVDRALLCFAKMMEK--NY-DADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW-QATFKTLIEKLLGARRLE 531 (639)
Q Consensus 456 ~g~~~~a~~~~~~m~~~--g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~ 531 (639)
.|..|+|...+...-+. |. .| ..|.. --|.+.+..+-|.++|.+... +.|+ +..++-+--.....+.+.
T Consensus 359 e~EhdQAmaaY~tAarl~~G~hlP--~LYlg--mey~~t~n~kLAe~Ff~~A~a---i~P~Dplv~~Elgvvay~~~~y~ 431 (611)
T KOG1173|consen 359 EGEHDQAMAAYFTAARLMPGCHLP--SLYLG--MEYMRTNNLKLAEKFFKQALA---IAPSDPLVLHELGVVAYTYEEYP 431 (611)
T ss_pred cchHHHHHHHHHHHHHhccCCcch--HHHHH--HHHHHhccHHHHHHHHHHHHh---cCCCcchhhhhhhheeehHhhhH
Confidence 99999999888877663 32 22 22322 347778899999999988764 4443 445555544455678889
Q ss_pred HHHHHHHHHHhC---------CCCCChHhHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037477 532 EAMNLLRLMKKQ---------NYPPFPEPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDL 602 (639)
Q Consensus 532 ~A~~~~~~m~~~---------~~~p~~~~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 602 (639)
+|..+|+..... ...|...-+...+.+++.+++|+..+++.....|.++.+|.++.-.|...|+++.|++.
T Consensus 432 ~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~ 511 (611)
T KOG1173|consen 432 EALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDH 511 (611)
T ss_pred HHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHH
Confidence 999988877621 02233444556667899999999999999999999999999999999999999999999
Q ss_pred HhhCCccccCChhHHHhhhccCCC
Q 037477 603 LYKCPHHIRQDSKISLLFGSAKSN 626 (639)
Q Consensus 603 ~~~m~~~~~~~~~~~~l~~~~~~~ 626 (639)
|++-..-.+.+..++.+++.+...
T Consensus 512 fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 512 FHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHh
Confidence 999644444454555555544433
No 62
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.04 E-value=2.2e-06 Score=88.05 Aligned_cols=286 Identities=13% Similarity=0.084 Sum_probs=190.9
Q ss_pred ccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhc-----CC
Q 037477 243 RIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDT-YIKISRQFQKF-----RM 316 (639)
Q Consensus 243 ~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~-----g~ 316 (639)
.|++++|++.++.-. ..+......+......+.+.|+.++|..++..+.+++ |+... |..+..+..-. ..
T Consensus 17 ~g~~~~AL~~L~~~~--~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~~~ 92 (517)
T PF12569_consen 17 AGDYEEALEHLEKNE--KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSDED 92 (517)
T ss_pred CCCHHHHHHHHHhhh--hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccccccc
Confidence 478888888887652 3334445666777888999999999999999999985 55555 45555554222 25
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHH
Q 037477 317 MEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMM 396 (639)
Q Consensus 317 ~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 396 (639)
.+....+|+++...- |.......+.=.+.. |..=...+...+......|++ .+|+.+-..|....+.+-..+++
T Consensus 93 ~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~-g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 93 VEKLLELYDELAEKY--PRSDAPRRLPLDFLE-GDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred HHHHHHHHHHHHHhC--ccccchhHhhcccCC-HHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHH
Confidence 777888888886542 332222111111110 100011222333333344433 35677777777666666666666
Q ss_pred HHHHHC----C----------CCCCHH--hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCH
Q 037477 397 KAMKNA----G----------FEPDNI--TYSQVIFGLCKAGRFEDACNVLDEMEENGCIPD-IKTWTILIQGHCAANEV 459 (639)
Q Consensus 397 ~~m~~~----g----------~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~li~~~~~~g~~ 459 (639)
...... + -+|+.. ++.-+...|-..|++++|++..++.++.. |+ +..|..-...+-+.|++
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCCH
Confidence 665432 1 124443 34556677888999999999999988864 54 66888888899999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHH------HH--HHHHHHHHhcCCHH
Q 037477 460 DRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQA------TF--KTLIEKLLGARRLE 531 (639)
Q Consensus 460 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~------~~--~~li~~~~~~g~~~ 531 (639)
.+|.+.++...+.. .-|...-+-....+.++|++++|.+++....+. +..|-.. .| .....+|.+.|++.
T Consensus 245 ~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~-~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 245 KEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTRE-DVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC-CCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999998876 447788888888999999999999999888765 4333321 22 34467888999999
Q ss_pred HHHHHHHHHHh
Q 037477 532 EAMNLLRLMKK 542 (639)
Q Consensus 532 ~A~~~~~~m~~ 542 (639)
.|++-|..+.+
T Consensus 323 ~ALk~~~~v~k 333 (517)
T PF12569_consen 323 LALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHH
Confidence 98887776654
No 63
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.04 E-value=1.7e-05 Score=73.64 Aligned_cols=443 Identities=10% Similarity=0.055 Sum_probs=235.6
Q ss_pred CChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHHH
Q 037477 107 NDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAAL 186 (639)
Q Consensus 107 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~ 186 (639)
.|+..|+.+++.-.. .+-.-...+--.+...+...|++++|...|.-..+.. .++...+..|--...-.|++.++..+
T Consensus 36 rDytGAislLefk~~-~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~ 113 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLN-LDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSI 113 (557)
T ss_pred ccchhHHHHHHHhhc-cchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHH
Confidence 678888888776654 1111111112223445567899999999998777654 34555555554444445555555322
Q ss_pred HHHHHHHhhhccchhHHHHHHHHHhcCCchHHHHHHHhhccCcCCHHHHHHHHHHhccChHHHHHHHHHHhccCCCCCCH
Q 037477 187 NQFHDGMVKEIAMDNVAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKHNT 266 (639)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p~~ 266 (639)
.... ...|--..-+.++-.+.++.......-..++........+..+.-++.++.+|+++|.++... .|+-
T Consensus 114 ---~~ka---~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d---n~ey 184 (557)
T KOG3785|consen 114 ---AEKA---PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD---NPEY 184 (557)
T ss_pred ---HhhC---CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc---Chhh
Confidence 2222 122223334445555666666555555555555555556666677788999999999999633 4555
Q ss_pred HHHHHHHH-HHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 037477 267 ITYNGILR-VLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRS 345 (639)
Q Consensus 267 ~~~~~li~-~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~ 345 (639)
...|.-+. +|.+..-++-+.++++.-.+. ++.+....|.......+.=.-..|.+-..++.+.+-+. |.. +.-
T Consensus 185 ~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~~f-~~~ 258 (557)
T KOG3785|consen 185 IALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----YPF-IEY 258 (557)
T ss_pred hhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----chh-HHH
Confidence 55665543 456777778888888776654 23344445544443333212122222223332221110 100 011
Q ss_pred HhhcC---CCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH--Hh
Q 037477 346 ISSIN---NPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGL--CK 420 (639)
Q Consensus 346 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~--~~ 420 (639)
+++.. -.+-+.+.+++-.+.+. -| ..--.++--|.+.+++.+|..+.+++. +.++.-| ++.+. +.
T Consensus 259 l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~Ey--ilKgvv~aa 328 (557)
T KOG3785|consen 259 LCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEY--ILKGVVFAA 328 (557)
T ss_pred HHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcC----CCChHHH--HHHHHHHHH
Confidence 11100 01112233333222221 11 112234556778888888888877764 2223222 22222 22
Q ss_pred cC-------CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 037477 421 AG-------RFEDACNVLDEMEENGCIPD-IKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQK 492 (639)
Q Consensus 421 ~g-------~~~~A~~~~~~m~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 492 (639)
.| .+.-|.+.|+-.-.++..-| +.--.++...+.-..++++++-.++.+...-..-|...+ .+.++++..|
T Consensus 329 lGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atg 407 (557)
T KOG3785|consen 329 LGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATG 407 (557)
T ss_pred hhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhc
Confidence 22 34456666665555443322 223345555666666778888777777765333344443 4567788888
Q ss_pred ChhHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHh----hcCCHHHHHH
Q 037477 493 RVNGAYKLLVEMIEKVRLRPWQATFKTL-IEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYIS----KFGTVEDASE 567 (639)
Q Consensus 493 ~~~~A~~~~~~m~~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~----~~g~~~~a~~ 567 (639)
.+.+|.++|-.+... .+ .|..+|..+ .++|.+.|+++-|++++-++. -+.+..++..+++ +++.+=-|.+
T Consensus 408 ny~eaEelf~~is~~-~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaK 482 (557)
T KOG3785|consen 408 NYVEAEELFIRISGP-EI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAK 482 (557)
T ss_pred ChHHHHHHHhhhcCh-hh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888776432 22 344555544 467778888887777654443 3334445555552 5566666677
Q ss_pred HHHHhhcCCCCCHHHH
Q 037477 568 FLKALSVKEYPSSAAY 583 (639)
Q Consensus 568 ~~~~~~~~~~~~~~~~ 583 (639)
.|+.+... .|+++.|
T Consensus 483 AFd~lE~l-DP~pEnW 497 (557)
T KOG3785|consen 483 AFDELEIL-DPTPENW 497 (557)
T ss_pred hhhHHHcc-CCCcccc
Confidence 77666554 3344444
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.04 E-value=4.1e-07 Score=96.64 Aligned_cols=216 Identities=10% Similarity=-0.059 Sum_probs=150.7
Q ss_pred ccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 037477 385 KLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALL 464 (639)
Q Consensus 385 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~ 464 (639)
..+++++|...+++..+.. +-+...+..+...+...|++++|...|++..+.+.. +...+..+...+...|++++|..
T Consensus 316 ~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~ 393 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQ 393 (553)
T ss_pred cchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 3456889999999988875 446778888888888999999999999999887532 46678888889999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 037477 465 CFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW-QATFKTLIEKLLGARRLEEAMNLLRLMKKQ 543 (639)
Q Consensus 465 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 543 (639)
.+++..+.... +...+..++..+...|++++|...+++..+. . .|+ ...+..+..++...|+.++|.+.+.++...
T Consensus 394 ~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~-~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 394 TINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQ-H-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHh-c-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 99999887533 2233334444566688999999999988764 1 243 445666777888999999999999887653
Q ss_pred CCCCChHhHHHHH--hhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCc
Q 037477 544 NYPPFPEPFVQYI--SKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPH 608 (639)
Q Consensus 544 ~~~p~~~~~~~ll--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 608 (639)
.|+.......+ ...+.-+.|...++.+.+...........+...|.-.|+.+.+..+ +++.+
T Consensus 471 --~~~~~~~~~~l~~~~~~~g~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 471 --EITGLIAVNLLYAEYCQNSERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred --cchhHHHHHHHHHHHhccHHHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhc
Confidence 45544443333 1233336888878877765222221222244555556776666655 77643
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=3.2e-08 Score=90.36 Aligned_cols=226 Identities=13% Similarity=0.089 Sum_probs=188.4
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHH
Q 037477 375 VYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTW-TILIQGH 453 (639)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~-~~li~~~ 453 (639)
.-+-|..+|.+.|.+.+|++.|+.-.+. .|-+.||-.|-+.|.+..+++.|+.++.+-.+. .|-.+|| .-+.+.+
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHH
Confidence 3456889999999999999999988877 677788999999999999999999999988765 3655665 4577888
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037477 454 CAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEA 533 (639)
Q Consensus 454 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 533 (639)
...++.++|.++++...+.. ..++....++...|.-.++.+-|+.+++++.+- |+. +...|+.+--+|.-.++++-+
T Consensus 301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~~-speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GAQ-SPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cCC-ChHHHhhHHHHHHhhcchhhh
Confidence 88999999999999998864 456667777778888899999999999999987 653 456888888888889999999
Q ss_pred HHHHHHHHhCCCCCChH--hH---HHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037477 534 MNLLRLMKKQNYPPFPE--PF---VQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCP 607 (639)
Q Consensus 534 ~~~~~~m~~~~~~p~~~--~~---~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 607 (639)
+--|++....--.|+.. .| ..+....|++..|.+.|+.....++.+.+.++.|.-.-.+.|+.++|..++....
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 99999988754445433 22 2223467999999999999999999999999999999999999999999998743
No 66
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.01 E-value=3.3e-07 Score=92.78 Aligned_cols=247 Identities=15% Similarity=0.135 Sum_probs=176.8
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHC-----CC-CCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHH
Q 037477 265 NTITYNGILRVLARHESVRDFWNVVEEMKKE-----GY-EMDIDT-YIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQ 337 (639)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~-~p~~~~-~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ 337 (639)
-..+...+...|...|+++.|..+++...+. |. .|.+.+ .+.+...|...+++++|..+|+++...
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i------- 270 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI------- 270 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-------
Confidence 3456666999999999999999999887654 21 233333 445778899999999999999988642
Q ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHC-----CCC-CCH-Hh
Q 037477 338 DCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNA-----GFE-PDN-IT 410 (639)
Q Consensus 338 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~-~~~-~~ 410 (639)
.........+.-..+++.|..+|.+.|++++|...++...+- |.. |.+ ..
T Consensus 271 -----------------------~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~ 327 (508)
T KOG1840|consen 271 -----------------------REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQ 327 (508)
T ss_pred -----------------------HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHH
Confidence 111111111222346777888999999999988887776432 211 222 23
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C--CCC
Q 037477 411 YSQVIFGLCKAGRFEDACNVLDEMEEN---GCIPD----IKTWTILIQGHCAANEVDRALLCFAKMMEK-----N--YDA 476 (639)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-----g--~~~ 476 (639)
++.+...|+..+++++|..+++...+. -..++ ..+++.|...|.+.|++++|.+++++.+.. | ..-
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 566778889999999999999876431 11222 357899999999999999999999988762 1 112
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHH---hCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037477 477 DADLLDVLINGFLSQKRVNGAYKLLVEMIE---KVRL-RPW-QATFKTLIEKLLGARRLEEAMNLLRLMK 541 (639)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 541 (639)
....++.|-..|.+.+++.+|.++|.+... ..|. .|+ ..+|..|...|.+.|++++|.++.+...
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 245577788889999999999999886443 2222 333 5688999999999999999999988776
No 67
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.00 E-value=2.5e-07 Score=89.80 Aligned_cols=216 Identities=10% Similarity=-0.051 Sum_probs=154.2
Q ss_pred cCChhHHHHHHHHHHHCC-CCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 037477 386 LGRFDEAEKMMKAMKNAG-FEPD--NITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRA 462 (639)
Q Consensus 386 ~g~~~~A~~~~~~m~~~g-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a 462 (639)
.+..+.+..-+.++.... ..|+ ...|..+...|...|+.++|...|++..+.... +...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence 345666777777776432 1222 345777788899999999999999999887543 678999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 463 LLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 463 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
...|++.++.. +-+..++..+..++...|++++|.+.|+...+. .|+..........+...++.++|.+.+.+...
T Consensus 118 ~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 118 YEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 99999999864 335677788888889999999999999998875 44432222222234456789999999977654
Q ss_pred CCCCCChHhHHHHHhhcCCHHHHHHHHHHhhcC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCc
Q 037477 543 QNYPPFPEPFVQYISKFGTVEDASEFLKALSVK-------EYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPH 608 (639)
Q Consensus 543 ~~~~p~~~~~~~ll~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 608 (639)
.. .|+...+.......|+.+.+ ..++.+.+. .+...+.|..+...|.+.|++++|...|++...
T Consensus 194 ~~-~~~~~~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 194 KL-DKEQWGWNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred hC-CccccHHHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 32 33322233333345666554 345555432 234567899999999999999999999998643
No 68
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.99 E-value=1.4e-06 Score=89.57 Aligned_cols=289 Identities=15% Similarity=0.116 Sum_probs=199.3
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHh----hc
Q 037477 274 RVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSIS----SI 349 (639)
Q Consensus 274 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~----~~ 349 (639)
..+...|++++|++.++.-... +......+......+.+.|+.++|..+|..+.+. .|+...|-..+..+. ..
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhccc
Confidence 4568889999999999875544 3434556677888999999999999999999987 577777776666655 22
Q ss_pred CCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCh-hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 037477 350 NNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRF-DEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDAC 428 (639)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 428 (639)
...+......+++.+...- |.......+.-.+.....+ ..+..++..+...|+++ +++.|-..|....+.+-..
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHH
Confidence 2234556666666665543 2222222222222222223 34556777778888654 5666767777666666666
Q ss_pred HHHHHHHHC----C----------CCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcC
Q 037477 429 NVLDEMEEN----G----------CIPDI--KTWTILIQGHCAANEVDRALLCFAKMMEKNYDAD-ADLLDVLINGFLSQ 491 (639)
Q Consensus 429 ~~~~~m~~~----~----------~~p~~--~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~ 491 (639)
+++...... + -.|.. .++.-+.+.|-..|++++|++++++.++.. |+ +..|..-...+-+.
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHC
Confidence 666665432 1 12444 344666788899999999999999999884 44 67788888999999
Q ss_pred CChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhH-----------HHHHhhcC
Q 037477 492 KRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPF-----------VQYISKFG 560 (639)
Q Consensus 492 g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-----------~~ll~~~g 560 (639)
|++.+|.+.++....-. .-|...-+..+..+.++|+.++|.+++....+.+..|..... ...+.+.|
T Consensus 242 G~~~~Aa~~~~~Ar~LD--~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELD--LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred CCHHHHHHHHHHHHhCC--hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999987652 235566677788899999999999999999887654432211 11124668
Q ss_pred CHHHHHHHHHHhhc
Q 037477 561 TVEDASEFLKALSV 574 (639)
Q Consensus 561 ~~~~a~~~~~~~~~ 574 (639)
++..|.+.|..+.+
T Consensus 320 ~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 320 DYGLALKRFHAVLK 333 (517)
T ss_pred hHHHHHHHHHHHHH
Confidence 88888777666544
No 69
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=4.4e-05 Score=76.02 Aligned_cols=160 Identities=16% Similarity=0.170 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHH--------HHHHhCCCCCC
Q 037477 444 KTWTILIQGHCAA--NEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLV--------EMIEKVRLRPW 513 (639)
Q Consensus 444 ~t~~~li~~~~~~--g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~~~~~p~ 513 (639)
..+.+++..+.+. .....+.+++...-+....-...+.-.++......|+++.|.+++. .+.+. +-.|.
T Consensus 340 ~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~-~~~P~ 418 (652)
T KOG2376|consen 340 SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA-KHLPG 418 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh-ccChh
Confidence 3444555444332 2356666666666554322224455566777889999999999998 55443 44555
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCChHhHHHHH-------hhcCCHHHHHHHHHHhhcCCCCCHHHHH
Q 037477 514 QATFKTLIEKLLGARRLEEAMNLLRLMKKQ--NYPPFPEPFVQYI-------SKFGTVEDASEFLKALSVKEYPSSAAYL 584 (639)
Q Consensus 514 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ll-------~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 584 (639)
+-..++..+.+.++-+-|.+++++.... .-.+....+..++ .+.|+-++|...++++.+..+++..+..
T Consensus 419 --~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~ 496 (652)
T KOG2376|consen 419 --TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLV 496 (652)
T ss_pred --HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHH
Confidence 5567777788888877788888776641 1122223333332 3569999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCC
Q 037477 585 QVFESFFNEGRHYEAKDLLYKCP 607 (639)
Q Consensus 585 ~l~~~~~~~g~~~~A~~~~~~m~ 607 (639)
.++.+|++. +.+.|..+-++.+
T Consensus 497 ~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 497 QLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred HHHHHHHhc-CHHHHHHHhhcCC
Confidence 999999975 5688988888863
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.95 E-value=1.4e-07 Score=86.21 Aligned_cols=234 Identities=14% Similarity=0.045 Sum_probs=168.5
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 037477 265 NTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLR 344 (639)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~ 344 (639)
|-.=-+-+..+|.+.|.+.+|.+-|+.-.+. .|-+.||-.|-..|.+..+.+.|+.+|.+-.+. .|-.+||.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l---- 293 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYL---- 293 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhh----
Confidence 3333466778888888888888888887776 567778888888888888888888888877653 34333332
Q ss_pred HHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH
Q 037477 345 SISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRF 424 (639)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 424 (639)
..+.+.+-..++.++|.++++...+.. +.++.....+..+|.-.+++
T Consensus 294 --------------------------------~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~P 340 (478)
T KOG1129|consen 294 --------------------------------LGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNP 340 (478)
T ss_pred --------------------------------hhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCCh
Confidence 224445555677888888888887664 44555666666777788888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCChhHHHHHHH
Q 037477 425 EDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDAD--ADLLDVLINGFLSQKRVNGAYKLLV 502 (639)
Q Consensus 425 ~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~ 502 (639)
+-|+..++++.+.|+. +...|+.+.-+|.-.+++|-++..|.+....--.|+ ..+|-.|-......|++..|.+.|+
T Consensus 341 E~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfr 419 (478)
T KOG1129|consen 341 EMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFR 419 (478)
T ss_pred HHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHH
Confidence 8888888888888876 777888888888888888888888888776443333 3456666666677788888888887
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 503 EMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 503 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
-.... -.-+...++.|.-.-.+.|++++|..+++....
T Consensus 420 laL~~--d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 420 LALTS--DAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHhcc--CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 76653 122456777776666778888888888877665
No 71
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.93 E-value=9.8e-05 Score=74.46 Aligned_cols=418 Identities=11% Similarity=0.033 Sum_probs=233.9
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcC
Q 037477 80 DELENKLEELSPKLTHESVVYVLRKLDNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDH 159 (639)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g 159 (639)
+.++..|.+.+.+...-.+......+-|+-++|........+ +-..+.++|..+--.+-...++++|+..|+.....+
T Consensus 28 K~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr--~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~ 105 (700)
T KOG1156|consen 28 KLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR--NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE 105 (700)
T ss_pred HHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhc--cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC
Confidence 345666776666666655555544445888888888877665 233577889988888888889999999999887765
Q ss_pred CCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCchHHHHHHHhhccCcCCHHHHHHHH
Q 037477 160 CYIEEETYLSILGVLKKAKKASDLAALNQFHDGMVKEIAMDNVAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVL 239 (639)
Q Consensus 160 ~~~~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 239 (639)
+-|...+.-+--.=++.++++.... .....++.... ....|- -..+-
T Consensus 106 -~dN~qilrDlslLQ~QmRd~~~~~~---tr~~LLql~~~----------------------------~ra~w~-~~Avs 152 (700)
T KOG1156|consen 106 -KDNLQILRDLSLLQIQMRDYEGYLE---TRNQLLQLRPS----------------------------QRASWI-GFAVA 152 (700)
T ss_pred -CCcHHHHHHHHHHHHHHHhhhhHHH---HHHHHHHhhhh----------------------------hHHHHH-HHHHH
Confidence 1233344332222222322222211 11111111000 000000 00111
Q ss_pred HHhccChHHHHHHHHHHhccCCCCCCHHHHHHHH------HHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 037477 240 KELRIYPVKALGFFRWVGEHSGYKHNTITYNGIL------RVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQK 313 (639)
Q Consensus 240 ~~~~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li------~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 313 (639)
..+.+....|..+.+...+...-.|+...|.... ....+.|.+++|.+.+..-... +.-....-.+-...+.+
T Consensus 153 ~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~k 231 (700)
T KOG1156|consen 153 QHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMK 231 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHH
Confidence 1224566677777777654443455655554433 3355678888887777665443 11122233445566788
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhh-cCCCchhHHH-HHHHHHHhcCCCCChhhHHHHHHHHHccCChhH
Q 037477 314 FRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISS-INNPDLGLVF-RVANKYESLGNSLSKSVYDGIHRALTKLGRFDE 391 (639)
Q Consensus 314 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 391 (639)
.+++++|..++..+... .||...|...+..+.- .. +...+. .++............. -..=++..-...-.+.
T Consensus 232 l~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~--d~~~~lk~ly~~ls~~y~r~e~p-~Rlplsvl~~eel~~~ 306 (700)
T KOG1156|consen 232 LGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIK--DMLEALKALYAILSEKYPRHECP-RRLPLSVLNGEELKEI 306 (700)
T ss_pred HhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHh--hhHHHHHHHHHHHhhcCcccccc-hhccHHHhCcchhHHH
Confidence 89999999999988875 5777777666554442 11 122222 3333332221110000 0000111111222344
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH----HCC----------CCCCHHHH--HHHHHHHHH
Q 037477 392 AEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEME----ENG----------CIPDIKTW--TILIQGHCA 455 (639)
Q Consensus 392 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~----------~~p~~~t~--~~li~~~~~ 455 (639)
.-+++..+.+.|+++ ++..+...|-.-...+-..++.-.+. ..| -.|....| --++..|-+
T Consensus 307 vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~ 383 (700)
T KOG1156|consen 307 VDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDK 383 (700)
T ss_pred HHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHH
Confidence 456677777777654 33444443332222111111111111 111 13555444 457788889
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037477 456 ANEVDRALLCFAKMMEKNYDADA-DLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAM 534 (639)
Q Consensus 456 ~g~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 534 (639)
.|+++.|...++..++. .|+. ..|..=...+.+.|++++|..++++..+- -.||...-..-..-..++++.++|.
T Consensus 384 ~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el--D~aDR~INsKcAKYmLrAn~i~eA~ 459 (700)
T KOG1156|consen 384 LGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL--DTADRAINSKCAKYMLRANEIEEAE 459 (700)
T ss_pred cccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHccccHHHH
Confidence 99999999999998876 4543 34445557889999999999999998764 2455444445566677899999999
Q ss_pred HHHHHHHhCCC
Q 037477 535 NLLRLMKKQNY 545 (639)
Q Consensus 535 ~~~~~m~~~~~ 545 (639)
++.....+.|.
T Consensus 460 ~~~skFTr~~~ 470 (700)
T KOG1156|consen 460 EVLSKFTREGF 470 (700)
T ss_pred HHHHHhhhccc
Confidence 99999988775
No 72
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.87 E-value=2e-06 Score=75.37 Aligned_cols=189 Identities=16% Similarity=0.111 Sum_probs=94.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 037477 412 SQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQ 491 (639)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 491 (639)
..|.-+|...|+...|..-+++..+.... +..+|..+...|.+.|+.+.|.+.|++.++.. +-+..+.|..-.-+|..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhC
Confidence 33444555555555555555555554322 33455555555555555555555555555543 22334444444445555
Q ss_pred CChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCChHhHHHHHhhcCCHHHHHHHH
Q 037477 492 KRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQN--YPPFPEPFVQYISKFGTVEDASEFL 569 (639)
Q Consensus 492 g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~ll~~~g~~~~a~~~~ 569 (639)
|++++|...|++........--..+|..+.-+..+.|+.+.|.+.|++..+.. ..|.........-+.|++-.|..++
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHH
Confidence 55555555555555431111112355555555555555555655555555422 1222222333334455555555555
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037477 570 KALSVKEYPSSAAYLQVFESFFNEGRHYEAKDL 602 (639)
Q Consensus 570 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 602 (639)
+......+++.+.....|..--+.|+.+.|-+.
T Consensus 197 ~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 197 ERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred HHHHhcccccHHHHHHHHHHHHHhccHHHHHHH
Confidence 555555445555555555555555555554433
No 73
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=0.0001 Score=70.15 Aligned_cols=290 Identities=10% Similarity=0.022 Sum_probs=134.8
Q ss_pred ChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 037477 245 YPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMD-IDTYIKISRQFQKFRMMEDAVKL 323 (639)
Q Consensus 245 ~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~l 323 (639)
+...|...|-.+.....++-|+.....+...+...|+.++|...|+..... .|+ +.........+.+.|+.+....+
T Consensus 211 ~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L 288 (564)
T KOG1174|consen 211 KHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSAL 288 (564)
T ss_pred ccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHH
Confidence 333444444444334445556666666666666666666666666665543 121 11111122223445555555444
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCC
Q 037477 324 FEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAG 403 (639)
Q Consensus 324 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 403 (639)
...+....- .+..-|-.-.......+++..|+.+-++-.+..
T Consensus 289 ~~~Lf~~~~--------------------------------------~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~ 330 (564)
T KOG1174|consen 289 MDYLFAKVK--------------------------------------YTASHWFVHAQLLYDEKKFERALNFVEKCIDSE 330 (564)
T ss_pred HHHHHhhhh--------------------------------------cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC
Confidence 444432100 000011111122233445555555555544332
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 037477 404 FEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDV 483 (639)
Q Consensus 404 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 483 (639)
+.+...|-.-...+...|+.++|.--|+..+.... -+...|..|+..|...|.+.+|.-+-+...+. +..+..+...
T Consensus 331 -~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL 407 (564)
T KOG1174|consen 331 -PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTL 407 (564)
T ss_pred -cccchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhh
Confidence 22223333333445556666666666666554321 24556666666666666666666555444332 1222223222
Q ss_pred HH-HHHH-cCCChhHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH---hHHHHHh
Q 037477 484 LI-NGFL-SQKRVNGAYKLLVEMIEKVRLRPW-QATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPE---PFVQYIS 557 (639)
Q Consensus 484 li-~~~~-~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~ 557 (639)
+- ..|. .-..-++|.++++.-.. +.|+ ....+.+.+.|...|..++++.++++... ..||.. .+..++.
T Consensus 408 ~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~ 482 (564)
T KOG1174|consen 408 FGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMR 482 (564)
T ss_pred hcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHH
Confidence 21 1111 11123555565554432 3444 23344455556666666666666665554 234332 3344455
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCHHH
Q 037477 558 KFGTVEDASEFLKALSVKEYPSSAA 582 (639)
Q Consensus 558 ~~g~~~~a~~~~~~~~~~~~~~~~~ 582 (639)
..+.+.+|.+.|.......|.+..+
T Consensus 483 A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 483 AQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HhhhHHHHHHHHHHHHhcCccchHH
Confidence 5566666666666666555544443
No 74
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.82 E-value=0.00023 Score=73.34 Aligned_cols=447 Identities=12% Similarity=0.024 Sum_probs=259.6
Q ss_pred ccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CchhhHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCchH
Q 037477 141 NKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKA---KKASDLAALNQFHDGMVKEIAMDNVAKTLVDVVLGSDWDD 217 (639)
Q Consensus 141 ~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 217 (639)
+.++.++++.-+..-...+...+..++..+..++... +..+++.-+..+-+.+...+...++.-.++-+..+
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k----- 313 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRK----- 313 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHH-----
Confidence 4566677777777777777777888888777766543 33444322222222222222222222222211110
Q ss_pred HHHHHHhhccCcCCHHHHHH---HHHHhccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 037477 218 KIGKKLEDMKIELSDNFVLT---VLKELRIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKK 294 (639)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 294 (639)
+....... ...+.+ ....+.|+.+.+-+.|++.. .+.--....|+.+-..|..+|.-..|..+++.-..
T Consensus 314 -----~r~~~~qn-d~ai~d~Lt~al~~~g~f~~lae~fE~~~--~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~ 385 (799)
T KOG4162|consen 314 -----LRLKKFQN-DAAIFDHLTFALSRCGQFEVLAEQFEQAL--PFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLK 385 (799)
T ss_pred -----HHHhhhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcc
Confidence 01111110 111111 11233577778888888774 34444667888888888888888888888877655
Q ss_pred CCCCC-CHHHHHHHHHHHH-hcCCHHHHHHHHHHhhcC--CCCC--CHHHHHHHHHHHhhcC---CCc------hhHHHH
Q 037477 295 EGYEM-DIDTYIKISRQFQ-KFRMMEDAVKLFEFMMDG--PYKP--SVQDCSLLLRSISSIN---NPD------LGLVFR 359 (639)
Q Consensus 295 ~g~~p-~~~~~~~li~~~~-~~g~~~~a~~l~~~m~~~--g~~p--~~~~~~~ll~~~~~~~---~~~------~~~~~~ 359 (639)
..-.| |...+-..-..|. +.+..++++++-.+.... +..- ....|..+=-+|.... +.+ ..+..+
T Consensus 386 ~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslq 465 (799)
T KOG4162|consen 386 KSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQ 465 (799)
T ss_pred cccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHH
Confidence 43223 3333333333343 357788888888887762 2111 1122222222222211 111 112333
Q ss_pred HHHHHHh-cCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 037477 360 VANKYES-LGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEEN- 437 (639)
Q Consensus 360 ~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 437 (639)
.+++..+ .+..|+...|- .--|+..++++.|.+...+..+.+-.-+...|..|.-.+...+++.+|+.+.+.....
T Consensus 466 ale~av~~d~~dp~~if~l--alq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~ 543 (799)
T KOG4162|consen 466 ALEEAVQFDPTDPLVIFYL--ALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF 543 (799)
T ss_pred HHHHHHhcCCCCchHHHHH--HHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Confidence 4444433 34445444443 3357788999999999999988866778889999999999999999999999886543
Q ss_pred CCCC------------------CHHHHHHHHHHHHH---------cC--------------CHHHHHHHHHHH-------
Q 037477 438 GCIP------------------DIKTWTILIQGHCA---------AN--------------EVDRALLCFAKM------- 469 (639)
Q Consensus 438 ~~~p------------------~~~t~~~li~~~~~---------~g--------------~~~~a~~~~~~m------- 469 (639)
|..- -..|...++...-. .| +..++.....++
T Consensus 544 ~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~ 623 (799)
T KOG4162|consen 544 GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQ 623 (799)
T ss_pred hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhh
Confidence 2200 01122222221110 00 001111111110
Q ss_pred -HHcC---------CC--CC------HHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 037477 470 -MEKN---------YD--AD------ADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLE 531 (639)
Q Consensus 470 -~~~g---------~~--~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 531 (639)
...| +. |+ ...|......+.+.+..++|...+.+....+ .-....|...-..+...|.++
T Consensus 624 ~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~--~l~~~~~~~~G~~~~~~~~~~ 701 (799)
T KOG4162|consen 624 LKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID--PLSASVYYLRGLLLEVKGQLE 701 (799)
T ss_pred hhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc--hhhHHHHHHhhHHHHHHHhhH
Confidence 0011 00 11 1233445567778888888887777776542 223445555556677889999
Q ss_pred HHHHHHHHHHhCCCCCC----hHhHHHHHhhcCCHHHHHH--HHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 037477 532 EAMNLLRLMKKQNYPPF----PEPFVQYISKFGTVEDASE--FLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYK 605 (639)
Q Consensus 532 ~A~~~~~~m~~~~~~p~----~~~~~~ll~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 605 (639)
+|.+.|..... +.|+ ...+..++.+.|+-..|.. ++..+.+.+|.+.+.|..+...+-+.|+.++|.+.|.-
T Consensus 702 EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~a 779 (799)
T KOG4162|consen 702 EAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQA 779 (799)
T ss_pred HHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 99999998876 4444 4455666677787777777 99999999999999999999999999999999999987
Q ss_pred C
Q 037477 606 C 606 (639)
Q Consensus 606 m 606 (639)
.
T Consensus 780 a 780 (799)
T KOG4162|consen 780 A 780 (799)
T ss_pred H
Confidence 3
No 75
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.81 E-value=0.00024 Score=71.54 Aligned_cols=505 Identities=11% Similarity=0.132 Sum_probs=282.3
Q ss_pred HHHHHHhhhCCCC---CHHHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHh
Q 037477 81 ELENKLEELSPKL---THESVVYVLRKLDNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKE 157 (639)
Q Consensus 81 ~~~~~l~~~~~~~---~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~ 157 (639)
.++..|..++..- -.+.++.-+.. .+-|+-+.++++...+ .++..-+--|..+++.++.++|-+.+.....
T Consensus 124 tfdrALraLpvtqH~rIW~lyl~Fv~~-~~lPets~rvyrRYLk-----~~P~~~eeyie~L~~~d~~~eaa~~la~vln 197 (835)
T KOG2047|consen 124 TFDRALRALPVTQHDRIWDLYLKFVES-HGLPETSIRVYRRYLK-----VAPEAREEYIEYLAKSDRLDEAAQRLATVLN 197 (835)
T ss_pred HHHHHHHhCchHhhccchHHHHHHHHh-CCChHHHHHHHHHHHh-----cCHHHHHHHHHHHHhccchHHHHHHHHHhcC
Confidence 3555565554322 22233333333 5677888888888877 5666677888888888888888777776664
Q ss_pred cC------CCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhhcc--chhHHHHHHHHHhcCCchHHHHHHHhhcc-C
Q 037477 158 DH------CYIEEETYLSILGVLKKAKKASDLAALNQFHDGMVKEIA--MDNVAKTLVDVVLGSDWDDKIGKKLEDMK-I 228 (639)
Q Consensus 158 ~g------~~~~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~ 228 (639)
+. -+.+...|.-+-...++..+.-.-..+-.++..++..-. ....+++|.+-|.+.|..+.+..++++.- .
T Consensus 198 ~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 198 QDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT 277 (835)
T ss_pred chhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 32 123334455444444443222111222223333333211 11256677777777777777666665531 1
Q ss_pred cCCHH---HHHHHHHHh---------------------ccChHHHHHHHHHHhccCCC----------CCCHHHHHHHHH
Q 037477 229 ELSDN---FVLTVLKEL---------------------RIYPVKALGFFRWVGEHSGY----------KHNTITYNGILR 274 (639)
Q Consensus 229 ~~~~~---~~~~~l~~~---------------------~~~~~~A~~~f~~~~~~~~~----------~p~~~~~~~li~ 274 (639)
..+.. .+.+.+... ..+.+-.+.-|+.+.....+ +.|+..|..-..
T Consensus 278 v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~ 357 (835)
T KOG2047|consen 278 VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK 357 (835)
T ss_pred heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh
Confidence 11111 111111100 01122233333333322111 234445544443
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhh
Q 037477 275 VLARHESVRDFWNVVEEMKKEGYEM------DIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISS 348 (639)
Q Consensus 275 ~~~~~g~~~~a~~~~~~m~~~g~~p------~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~ 348 (639)
. ..|+..+-...|.+..+. +.| -...|..+...|-.+|+++.|..+|++..+-..+-- .-|-..++.
T Consensus 358 l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v----~dLa~vw~~ 430 (835)
T KOG2047|consen 358 L--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTV----EDLAEVWCA 430 (835)
T ss_pred h--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccch----HHHHHHHHH
Confidence 3 346667777777777653 122 234578888889999999999999998876543322 222222221
Q ss_pred c-----CCCchhHHHHHHHHHHhcCCCC-----------------ChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCC
Q 037477 349 I-----NNPDLGLVFRVANKYESLGNSL-----------------SKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEP 406 (639)
Q Consensus 349 ~-----~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 406 (639)
. .+.+.+.+..+.+.....+..+ +..+|...++.--..|-++....+++.+.+..+-.
T Consensus 431 waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaT 510 (835)
T KOG2047|consen 431 WAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIAT 510 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC
Confidence 1 1223334444443333222211 22335555555566788888889999988776432
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 037477 407 DNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDI-KTWTILIQGHCA---ANEVDRALLCFAKMMEKNYDADADLLD 482 (639)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~~~~ 482 (639)
.....|- ...+-.+.-++++++++++-+..=.-|++ ..|+.-+.-+.+ .-..+.|..+|++.++ |++|...-+-
T Consensus 511 Pqii~Ny-AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKti 588 (835)
T KOG2047|consen 511 PQIIINY-AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTI 588 (835)
T ss_pred HHHHHHH-HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHH
Confidence 2222221 12233456678888888765443223454 367776666654 2368999999999998 6666543322
Q ss_pred HHH--HHHHcCCChhHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhH------
Q 037477 483 VLI--NGFLSQKRVNGAYKLLVEMIEKVRLRPW--QATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPF------ 552 (639)
Q Consensus 483 ~li--~~~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~------ 552 (639)
-|+ ..=-+.|....|+.++++... ++.+. ...||..|.--...=-+.....++++..+. -|+...-
T Consensus 589 yLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrF 664 (835)
T KOG2047|consen 589 YLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRF 664 (835)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHH
Confidence 222 112345888899999998765 45544 457777775444433345566777777763 4555433
Q ss_pred HHHHhhcCCHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHh
Q 037477 553 VQYISKFGTVEDASEFLKALSVKEYP--SSAAYLQVFESFFNEGRHYEAKDLLY 604 (639)
Q Consensus 553 ~~ll~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~ 604 (639)
..+=++.|.++.|..++..-.+..+| +..-|...-..=.+.|+-+...++++
T Consensus 665 AdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keMLR 718 (835)
T KOG2047|consen 665 ADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEMLR 718 (835)
T ss_pred HHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 33336889999999999888777444 56667777777788898555555543
No 76
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.79 E-value=6.2e-06 Score=72.36 Aligned_cols=201 Identities=14% Similarity=0.042 Sum_probs=162.6
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 037477 376 YDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCA 455 (639)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~ 455 (639)
...+.-.|...|+...|.+-+++..+.. +.+..+|..+...|.+.|+.+.|.+.|++..+.... +..+.|....-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 3446678999999999999999999874 445678999999999999999999999999886543 66788888889999
Q ss_pred cCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037477 456 ANEVDRALLCFAKMMEKN-YDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAM 534 (639)
Q Consensus 456 ~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 534 (639)
.|.+++|...|++....- ..--..+|..+.-+..+.|+.+.|...|++..+...-. ..+...+.....+.|++-.|.
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~--~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF--PPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC--ChHHHHHHHHHHhcccchHHH
Confidence 999999999999998842 22235677788888889999999999999988763333 347778888899999999999
Q ss_pred HHHHHHHhCCCCCChHhHHHHH---hhcCCHHHHHHHHHHhhcCCCCCHH
Q 037477 535 NLLRLMKKQNYPPFPEPFVQYI---SKFGTVEDASEFLKALSVKEYPSSA 581 (639)
Q Consensus 535 ~~~~~m~~~~~~p~~~~~~~ll---~~~g~~~~a~~~~~~~~~~~~~~~~ 581 (639)
..++.....+. ++..++.-.+ ...|+.+.+-++=..+....|.+.+
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 99999887665 7776665544 4679999998887777776555443
No 77
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.77 E-value=0.00031 Score=70.96 Aligned_cols=361 Identities=14% Similarity=0.113 Sum_probs=218.8
Q ss_pred HHHHHHHhccChHHHHHHHHHHhccCCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 037477 235 VLTVLKELRIYPVKALGFFRWVGEHSGYKH-NTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQK 313 (639)
Q Consensus 235 ~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 313 (639)
+..++.+....+++|++.|+.... +.| |...|--+--.=++.|+++.....-..+.+.. +-....|..+..++.-
T Consensus 80 v~gl~~R~dK~Y~eaiKcy~nAl~---~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L 155 (700)
T KOG1156|consen 80 VLGLLQRSDKKYDEAIKCYRNALK---IEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHL 155 (700)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHH
Confidence 344444446788899999988752 234 56677666666677788888888877777663 3355678888888888
Q ss_pred cCCHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHhhcC-CCchhHHHHHHHHHHhc-CCCCChh-hHHHHHHHHHccCCh
Q 037477 314 FRMMEDAVKLFEFMMDGP-YKPSVQDCSLLLRSISSIN-NPDLGLVFRVANKYESL-GNSLSKS-VYDGIHRALTKLGRF 389 (639)
Q Consensus 314 ~g~~~~a~~l~~~m~~~g-~~p~~~~~~~ll~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~li~~~~~~g~~ 389 (639)
.|+...|..+.++..+.. -.|+...+.-....+-+.. ....+......+..... +...|.. .-..-...+.+.+++
T Consensus 156 ~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~l 235 (700)
T KOG1156|consen 156 LGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQL 235 (700)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhH
Confidence 999999999999887754 3566666544433222111 00111112222222221 1111222 223345677888999
Q ss_pred hHHHHHHHHHHHCCCCCCHHhHHHHHHHHH-hcCCHHHHH-HHHHHHHHCCCC---CCHHHHHHHHHHHHHcCCHHHHHH
Q 037477 390 DEAEKMMKAMKNAGFEPDNITYSQVIFGLC-KAGRFEDAC-NVLDEMEENGCI---PDIKTWTILIQGHCAANEVDRALL 464 (639)
Q Consensus 390 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~A~-~~~~~m~~~~~~---p~~~t~~~li~~~~~~g~~~~a~~ 464 (639)
++|..++..+... .||..-|......+. +-.+.-++. .+|....+.-.. |-....+ ++. ...-.+..-.
T Consensus 236 EeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpls-vl~---~eel~~~vdk 309 (700)
T KOG1156|consen 236 EEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLS-VLN---GEELKEIVDK 309 (700)
T ss_pred HhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHH-HhC---cchhHHHHHH
Confidence 9999999998877 577766665544333 333333333 666665543211 1111111 111 1222344455
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHh---CC----------CCCCH--HHHHHHHHHHHhcCC
Q 037477 465 CFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEK---VR----------LRPWQ--ATFKTLIEKLLGARR 529 (639)
Q Consensus 465 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~----------~~p~~--~~~~~li~~~~~~g~ 529 (639)
++..+++.|+++ ++..+...|-.-.+.+-..++.-.+... .| -.|.. .++-.++..|-+.|+
T Consensus 310 yL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~ 386 (700)
T KOG1156|consen 310 YLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGD 386 (700)
T ss_pred HHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHccc
Confidence 667777778654 3334444443322222222222222111 01 13443 355567888899999
Q ss_pred HHHHHHHHHHHHhCCCCCChHhHH----HHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 037477 530 LEEAMNLLRLMKKQNYPPFPEPFV----QYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYK 605 (639)
Q Consensus 530 ~~~A~~~~~~m~~~~~~p~~~~~~----~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 605 (639)
++.|...++...+ ..|+..-+- .++.+.|++++|..++++..+.+.+|...-..-+.-..++.+.++|.++..+
T Consensus 387 ~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~sk 464 (700)
T KOG1156|consen 387 YEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSK 464 (700)
T ss_pred HHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHH
Confidence 9999999999886 456655433 5557889999999999999999888887777888888999999999999888
Q ss_pred CCccc
Q 037477 606 CPHHI 610 (639)
Q Consensus 606 m~~~~ 610 (639)
....+
T Consensus 465 FTr~~ 469 (700)
T KOG1156|consen 465 FTREG 469 (700)
T ss_pred hhhcc
Confidence 64444
No 78
>PF12854 PPR_1: PPR repeat
Probab=98.75 E-value=1.1e-08 Score=61.85 Aligned_cols=32 Identities=22% Similarity=0.505 Sum_probs=17.8
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 037477 261 GYKHNTITYNGILRVLARHESVRDFWNVVEEM 292 (639)
Q Consensus 261 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 292 (639)
|+.||..|||+||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.74 E-value=1.2e-05 Score=78.17 Aligned_cols=216 Identities=11% Similarity=0.008 Sum_probs=116.7
Q ss_pred ChHHHHHHHHHHhccCCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037477 245 YPVKALGFFRWVGEHSGYKHN--TITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVK 322 (639)
Q Consensus 245 ~~~~A~~~f~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 322 (639)
..+.++.-+..+.......|+ ...|..+...|.+.|+.++|...|++..+.. +.+...|+.+...+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 344555556555433333332 3456666667777788888887777777664 3456777777777777888888877
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHC
Q 037477 323 LFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNA 402 (639)
Q Consensus 323 l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 402 (639)
.|+...+. .|+ +..++..+..++...|++++|.+.|+...+.
T Consensus 120 ~~~~Al~l--~P~------------------------------------~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 120 AFDSVLEL--DPT------------------------------------YNYAYLNRGIALYYGGRYELAQDDLLAFYQD 161 (296)
T ss_pred HHHHHHHh--CCC------------------------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 77776542 222 1223444555566677777777777776655
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---C---CC
Q 037477 403 GFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKN---Y---DA 476 (639)
Q Consensus 403 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g---~---~~ 476 (639)
.|+..........+...++.++|...|.+..... .|+...+ . ......|+.+.+ +.+..+.+.. . +.
T Consensus 162 --~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~ 234 (296)
T PRK11189 162 --DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAER 234 (296)
T ss_pred --CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHH
Confidence 2332211111222334566777777775544321 2222111 1 222234444332 2333333210 0 01
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 037477 477 DADLLDVLINGFLSQKRVNGAYKLLVEMIE 506 (639)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (639)
....|..+...+.+.|++++|...|++..+
T Consensus 235 ~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 235 LCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 123555666666666666666666666654
No 80
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=6.7e-06 Score=79.70 Aligned_cols=335 Identities=9% Similarity=0.003 Sum_probs=194.1
Q ss_pred ccChHHHHHHHHHHhccCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 037477 243 RIYPVKALGFFRWVGEHSGYKHN-TITYNGILRVLARHESVRDFWNVVEEMKKEGYEMD-IDTYIKISRQFQKFRMMEDA 320 (639)
Q Consensus 243 ~~~~~~A~~~f~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a 320 (639)
.+.+++|+++|.+..+ +.|| .+.|.....+|...|+|+++.+.-....+. .|+ +..+..-..++-..|++++|
T Consensus 128 ~kkY~eAIkyY~~AI~---l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~~~ea 202 (606)
T KOG0547|consen 128 NKKYDEAIKYYTQAIE---LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGKFDEA 202 (606)
T ss_pred cccHHHHHHHHHHHHh---cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhccHHHH
Confidence 4678889999998863 3567 788888888999999999888877777665 444 33455556677777888777
Q ss_pred HHHHHHhhc-CCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHH--hcCCCCChhhHHHHHHHHHccCChhHHHHHHH
Q 037477 321 VKLFEFMMD-GPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYE--SLGNSLSKSVYDGIHRALTKLGRFDEAEKMMK 397 (639)
Q Consensus 321 ~~l~~~m~~-~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 397 (639)
+.=..-..- .|+.-. .+--.+=+.+-+ ......-+.+. +.++.|+.....+....+...
T Consensus 203 l~D~tv~ci~~~F~n~-s~~~~~eR~Lkk------~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~----------- 264 (606)
T KOG0547|consen 203 LFDVTVLCILEGFQNA-SIEPMAERVLKK------QAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD----------- 264 (606)
T ss_pred HHhhhHHHHhhhcccc-hhHHHHHHHHHH------HHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc-----------
Confidence 542221111 111110 000000000000 00111112222 122334433333333222110
Q ss_pred HHHHCCCCCCHHhHHHHHHHHHh-----cCCHHHHHHHHHHHHH---CCCC---CCH------HHHHHHHHHHHHcCCHH
Q 037477 398 AMKNAGFEPDNITYSQVIFGLCK-----AGRFEDACNVLDEMEE---NGCI---PDI------KTWTILIQGHCAANEVD 460 (639)
Q Consensus 398 ~m~~~g~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~---~~~~---p~~------~t~~~li~~~~~~g~~~ 460 (639)
.......+.......+..++.. ...+.+|...+.+-.. .... .|. .+...-..-+.-.|+.-
T Consensus 265 -~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~ 343 (606)
T KOG0547|consen 265 -PKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSL 343 (606)
T ss_pred -ccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCch
Confidence 0000001111112222222111 1123333333322111 0000 111 11122222234568888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037477 461 RALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLM 540 (639)
Q Consensus 461 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 540 (639)
.|..-|+..++....++. .|--+-.+|....+.++.+..|+...+...-.||+ |..--..+.-.+++++|..=|++.
T Consensus 344 ~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dv--YyHRgQm~flL~q~e~A~aDF~Ka 420 (606)
T KOG0547|consen 344 GAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDV--YYHRGQMRFLLQQYEEAIADFQKA 420 (606)
T ss_pred hhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCch--hHhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987644433 36666677999999999999999988776666674 444444455567899999999998
Q ss_pred HhCCCCCC-hHhHHHHHh---hcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 541 KKQNYPPF-PEPFVQYIS---KFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 541 ~~~~~~p~-~~~~~~ll~---~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
.. +.|. ...+..+.+ +.+.++++...|+...++.|..++.|+....++..+++++.|.+.|++.
T Consensus 421 i~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 421 IS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred hh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 87 4454 334555543 6689999999999999999999999999999999999999999999984
No 81
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.72 E-value=4.4e-05 Score=76.98 Aligned_cols=302 Identities=13% Similarity=-0.025 Sum_probs=150.0
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHCC-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHH-HHHHH
Q 037477 266 TITYNGILRVLARHESVRDFWNVVEEMKKEG-YEMDIDT-YIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQ-DCSLL 342 (639)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~-~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~-~~~~l 342 (639)
...|..+...+...|+.+.+.+.+....+.. ..++... .......+...|++++|.+++++..+. .|+.. .+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~- 82 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL- 82 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-
Confidence 4567777777778888888777777665442 1223222 222344567789999999999988764 23322 1111
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhc
Q 037477 343 LRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPD-NITYSQVIFGLCKA 421 (639)
Q Consensus 343 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~ 421 (639)
...+. ......+..+.+.+.+... ....|+ ......+...+...
T Consensus 83 ~~~~~---------------------------------~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 83 HLGAF---------------------------------GLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred hHHHH---------------------------------HhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHc
Confidence 00000 0011123334444444331 111222 22333444556666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHcCCChhHHH
Q 037477 422 GRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNY-DADA--DLLDVLINGFLSQKRVNGAY 498 (639)
Q Consensus 422 g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~--~~~~~li~~~~~~g~~~~A~ 498 (639)
|++++|...+++..+.... +...+..+...|...|++++|...+++..+... .++. ..|..+...+...|++++|.
T Consensus 128 G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 128 GQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred CCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 7777777777776665422 345556666666677777777777666665321 1222 23445556666777777777
Q ss_pred HHHHHHHHhCCCCCCHHHH-H--HHHHHHHhcCCHHHHHHH---HHHHHhCCCCCC--h--HhHHHHHhhcCCHHHHHHH
Q 037477 499 KLLVEMIEKVRLRPWQATF-K--TLIEKLLGARRLEEAMNL---LRLMKKQNYPPF--P--EPFVQYISKFGTVEDASEF 568 (639)
Q Consensus 499 ~~~~~m~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~m~~~~~~p~--~--~~~~~ll~~~g~~~~a~~~ 568 (639)
.++++........+..... + .++.-+...|....+.++ ...-......+. . .+....+...|+.+.|...
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 7776654321111111111 1 222222233322222221 111111000000 0 1122223456777777777
Q ss_pred HHHhhcCCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 569 LKALSVKEYP---------SSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 569 ~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
++.+...... ..........++.+.|++++|.+.+...
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~a 333 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPV 333 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7766543111 1223334455567889999998888763
No 82
>PF12854 PPR_1: PPR repeat
Probab=98.71 E-value=2.6e-08 Score=60.24 Aligned_cols=34 Identities=29% Similarity=0.434 Sum_probs=32.3
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 037477 295 EGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMM 328 (639)
Q Consensus 295 ~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 328 (639)
+|+.||..||++||.+|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4899999999999999999999999999999984
No 83
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.69 E-value=1.4e-05 Score=72.45 Aligned_cols=314 Identities=12% Similarity=0.065 Sum_probs=149.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHH--HHH
Q 037477 269 YNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLL--RSI 346 (639)
Q Consensus 269 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll--~~~ 346 (639)
+++++..+.+..++++|++++..-.++. +.+......+..+|....++.+|-..|+++... -|...-|...- +.|
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 4556666667777777777777766653 225666777777777777777777777776542 23222221100 000
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHH--HHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH
Q 037477 347 SSINNPDLGLVFRVANKYESLGNSLSKSVYDGIH--RALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRF 424 (639)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 424 (639)
-. + -...+.++...+... +....-..-+ ......+|+..+..+.++....| +..+.+...-...+.|++
T Consensus 90 ~A-~--i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 90 KA-C--IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQY 160 (459)
T ss_pred Hh-c--ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccH
Confidence 00 0 011111111111110 0000000000 01123344444444444443211 122222222223345555
Q ss_pred HHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHcCCChhHHHH
Q 037477 425 EDACNVLDEMEEN-GCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLL----DVLINGFLSQKRVNGAYK 499 (639)
Q Consensus 425 ~~A~~~~~~m~~~-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~----~~li~~~~~~g~~~~A~~ 499 (639)
+.|.+-|+...+- |.. ....||..+.. .+.|+.+.|++...++++.|++-....- .-.+++-. .|+ -..
T Consensus 161 EaAvqkFqaAlqvsGyq-pllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrs-vgN---t~~ 234 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQ-PLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRS-VGN---TLV 234 (459)
T ss_pred HHHHHHHHHHHhhcCCC-chhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhc-ccc---hHH
Confidence 5555555554432 333 23344433322 2344555555555555555543211100 00000000 000 000
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCChHhHHHHH--hhcCCHHHHHHHHHHhhcCC
Q 037477 500 LLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKK-QNYPPFPEPFVQYI--SKFGTVEDASEFLKALSVKE 576 (639)
Q Consensus 500 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~ll--~~~g~~~~a~~~~~~~~~~~ 576 (639)
+-... -+..+|.-...+.+.|+++.|.+.+-.|.- .....|+.|+..+- ...++..+..+-+.-+....
T Consensus 235 lh~Sa--------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~n 306 (459)
T KOG4340|consen 235 LHQSA--------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQN 306 (459)
T ss_pred HHHHH--------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcC
Confidence 00000 011222222334567888888888777753 23345666775543 34566777777777777777
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCc
Q 037477 577 YPSSAAYLQVFESFFNEGRHYEAKDLLYKCPH 608 (639)
Q Consensus 577 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 608 (639)
|...+++..++-.|+++.-++-|.+++-+-++
T Consensus 307 PfP~ETFANlLllyCKNeyf~lAADvLAEn~~ 338 (459)
T KOG4340|consen 307 PFPPETFANLLLLYCKNEYFDLAADVLAENAH 338 (459)
T ss_pred CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcc
Confidence 88889999999999999999988888877544
No 84
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.67 E-value=0.00051 Score=71.14 Aligned_cols=391 Identities=15% Similarity=0.111 Sum_probs=190.7
Q ss_pred CCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhc-CC--------CCCHHHHHHHHHHHHh
Q 037477 106 DNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKED-HC--------YIEEETYLSILGVLKK 176 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~-g~--------~~~~~t~~~ll~~~~~ 176 (639)
-|+.+.|.+-.+.++ +-..|..|.+.|.+.++++-|.-.+-.|... |. .|+ .+-..+--....
T Consensus 741 iG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAie 812 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIE 812 (1416)
T ss_pred eccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHH
Confidence 577787777666664 5678999999999999999988888777643 11 121 222222222344
Q ss_pred cCchhhHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCchHHHHHHHhhcc-Cc--CCHHHHHHHHHHhccChHHHHHHH
Q 037477 177 AKKASDLAALNQFHDGMVKEIAMDNVAKTLVDVVLGSDWDDKIGKKLEDMK-IE--LSDNFVLTVLKELRIYPVKALGFF 253 (639)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~l~~~~~~~~~A~~~f 253 (639)
.|+.+++. .+|.+..+. .-+=.+|...|...++.++-+.-. +. .|+.....-| +.+++.+.|+++|
T Consensus 813 LgMlEeA~---~lYr~ckR~-------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~L-ear~Di~~Aleyy 881 (1416)
T KOG3617|consen 813 LGMLEEAL---ILYRQCKRY-------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYL-EARRDIEAALEYY 881 (1416)
T ss_pred HhhHHHHH---HHHHHHHHH-------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHH-HhhccHHHHHHHH
Confidence 55555543 334443332 122334455555555555544432 11 2222222222 2245566666666
Q ss_pred HHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC
Q 037477 254 RWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYK 333 (639)
Q Consensus 254 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~ 333 (639)
+... ...++. -+.+. .++.......+.+. |...|.-....+-..|+.+.|+.+|....+
T Consensus 882 EK~~--------~hafev-~rmL~--e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---- 940 (1416)
T KOG3617|consen 882 EKAG--------VHAFEV-FRMLK--EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYSSAKD---- 940 (1416)
T ss_pred HhcC--------ChHHHH-HHHHH--hChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHHHhhh----
Confidence 5431 111110 01110 12222222233322 334444455555566777777777766543
Q ss_pred CCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHH
Q 037477 334 PSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQ 413 (639)
Q Consensus 334 p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 413 (639)
|-.+++..|-.|+.++|-++-++- -|....-.
T Consensus 941 ------------------------------------------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYh 972 (1416)
T KOG3617|consen 941 ------------------------------------------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYH 972 (1416)
T ss_pred ------------------------------------------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHH
Confidence 334555555566666666555432 24444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC--C------CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHH
Q 037477 414 VIFGLCKAGRFEDACNVLDEMEENG--C------IPDIKTWTILIQGHCAAN--EVDRALLCFAKMMEKNYDADADLLDV 483 (639)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~~--~------~p~~~t~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~ 483 (639)
|.+.|-..|++.+|...|.+.+.-. + ..+...+| .+...| +.-.|.++|++. |.. +..
T Consensus 973 laR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~n----lal~s~~~d~v~aArYyEe~---g~~-----~~~ 1040 (1416)
T KOG3617|consen 973 LARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLAN----LALMSGGSDLVSAARYYEEL---GGY-----AHK 1040 (1416)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH----HHhhcCchhHHHHHHHHHHc---chh-----hhH
Confidence 5566666666666666665543210 0 00111111 111111 222233333322 211 112
Q ss_pred HHHHHHcCCChhHHHHH---------HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHH
Q 037477 484 LINGFLSQKRVNGAYKL---------LVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQ 554 (639)
Q Consensus 484 li~~~~~~g~~~~A~~~---------~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 554 (639)
.+..|-++|.+.+|+++ ++-+.+...-..|....+.-.+-++...++++|..++....+ |..
T Consensus 1041 AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~ 1111 (1416)
T KOG3617|consen 1041 AVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSG 1111 (1416)
T ss_pred HHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHH
Confidence 23346666666666544 222222222334566667777777778888888888776653 222
Q ss_pred H--HhhcCCHHHHHHHHHHhhcC--CCCC----HHHHHHHHHHHHhcCCHHHHHHHHhh
Q 037477 555 Y--ISKFGTVEDASEFLKALSVK--EYPS----SAAYLQVFESFFNEGRHYEAKDLLYK 605 (639)
Q Consensus 555 l--l~~~g~~~~a~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 605 (639)
. +|+..++.--.++-+.|.-. ..|+ ......+...+.++|.+..|.+-|.+
T Consensus 1112 AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1112 ALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred HHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 2 23334444444444444321 1122 23455666777778887777766655
No 85
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.67 E-value=2.5e-05 Score=79.29 Aligned_cols=67 Identities=10% Similarity=-0.050 Sum_probs=31.3
Q ss_pred ChHHHHHHHHHHhhcCCCC-CChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHH
Q 037477 108 DPEKASAFFNWVCDKKQFR-PSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAA 185 (639)
Q Consensus 108 ~~~~A~~~f~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~ 185 (639)
.+.+.+++-+......|-. -+-.--.+++..+.+ ++++|..+|-+-- .-...|..|....+|+++..
T Consensus 511 ~lhd~~eiadeas~~~ggdgt~fykvra~lail~k--kfk~ae~ifleqn---------~te~aigmy~~lhkwde~i~ 578 (1636)
T KOG3616|consen 511 FLHDILEIADEASIEIGGDGTDFYKVRAMLAILEK--KFKEAEMIFLEQN---------ATEEAIGMYQELHKWDEAIA 578 (1636)
T ss_pred HHHHHHHHHHHHhHhhCCCCchHHHHHHHHHHHHh--hhhHHHHHHHhcc---------cHHHHHHHHHHHHhHHHHHH
Confidence 4455566666655443322 223333455555544 4556655553311 11234455555555555543
No 86
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.66 E-value=0.00023 Score=71.67 Aligned_cols=296 Identities=13% Similarity=0.025 Sum_probs=175.7
Q ss_pred HHHHhccChHHHHHHHHHHhccCCCCCCHHH-HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-
Q 037477 238 VLKELRIYPVKALGFFRWVGEHSGYKHNTIT-YNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFR- 315 (639)
Q Consensus 238 ~l~~~~~~~~~A~~~f~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g- 315 (639)
.+....++++.+...+....+.....++... .......+...|++++|.+++++..+.. +.|...+.. ...+...|
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~ 91 (355)
T cd05804 14 LLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGD 91 (355)
T ss_pred HHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcc
Confidence 3334456677767777666433332333322 2223345677899999999999988763 334444443 22333333
Q ss_pred ---CHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHccCChhH
Q 037477 316 ---MMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLS-KSVYDGIHRALTKLGRFDE 391 (639)
Q Consensus 316 ---~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~ 391 (639)
....+.+.+... . +..|+ ......+...+...|++++
T Consensus 92 ~~~~~~~~~~~l~~~--~-------------------------------------~~~~~~~~~~~~~a~~~~~~G~~~~ 132 (355)
T cd05804 92 FSGMRDHVARVLPLW--A-------------------------------------PENPDYWYLLGMLAFGLEEAGQYDR 132 (355)
T ss_pred cccCchhHHHHHhcc--C-------------------------------------cCCCCcHHHHHHHHHHHHHcCCHHH
Confidence 333333333320 0 11111 2233345567788999999
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHHcCCHHHHHHHHHH
Q 037477 392 AEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGC-IPDI--KTWTILIQGHCAANEVDRALLCFAK 468 (639)
Q Consensus 392 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~--~t~~~li~~~~~~g~~~~a~~~~~~ 468 (639)
|.+.+++..+.. +.+...+..+...|...|++++|...+++...... .|+. ..|..+...+...|++++|..++++
T Consensus 133 A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 211 (355)
T cd05804 133 AEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDT 211 (355)
T ss_pred HHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999875 44567788888999999999999999999876532 2232 3456788889999999999999999
Q ss_pred HHHcCC-CCCHHHH-H--HHHHHHHcCCChhHHHHH--HHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037477 469 MMEKNY-DADADLL-D--VLINGFLSQKRVNGAYKL--LVEMIEKVRL-RPWQATFKTLIEKLLGARRLEEAMNLLRLMK 541 (639)
Q Consensus 469 m~~~g~-~~~~~~~-~--~li~~~~~~g~~~~A~~~--~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 541 (639)
...... .+..... + .++.-+...|..+.+.+. .......... ............++...|+.++|..+++.+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~ 291 (355)
T cd05804 212 HIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALK 291 (355)
T ss_pred HhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 865432 1222211 1 333344445544433333 2211111000 1111222356677888999999999999987
Q ss_pred hCCCCC--C-h----H---hHHHH-HhhcCCHHHHHHHHHHhhcC
Q 037477 542 KQNYPP--F-P----E---PFVQY-ISKFGTVEDASEFLKALSVK 575 (639)
Q Consensus 542 ~~~~~p--~-~----~---~~~~l-l~~~g~~~~a~~~~~~~~~~ 575 (639)
...... . . . ....+ ....|+.++|.+.+......
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 292 GRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 632221 0 0 0 11111 14779999999988877643
No 87
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=0.00016 Score=68.99 Aligned_cols=298 Identities=13% Similarity=0.098 Sum_probs=197.8
Q ss_pred CCCHHHHHHHHHHHHc--CCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHH
Q 037477 263 KHNTITYNGILRVLAR--HESVRDFWNVVEEMKKE-GYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDC 339 (639)
Q Consensus 263 ~p~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~ 339 (639)
.|+..+...-|.+++. .++...|...+-.+... -++-|+.....+...+...|+.++|+..|+..+.. .|+..+
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~- 267 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVE- 267 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--Chhhhh-
Confidence 3443344444444443 34444444444444333 34567888999999999999999999999987643 232221
Q ss_pred HHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 037477 340 SLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLC 419 (639)
Q Consensus 340 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 419 (639)
.+ ..|.. .+.+.|+.+....+...+.... +-....|-.-....-
T Consensus 268 -~M-------------------------------D~Ya~---LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~ 311 (564)
T KOG1174|consen 268 -AM-------------------------------DLYAV---LLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLY 311 (564)
T ss_pred -hH-------------------------------HHHHH---HHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhh
Confidence 10 11222 2356677777777776665432 122233433344445
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 037477 420 KAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYK 499 (639)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 499 (639)
...+++.|+.+-++-++.... +...|-.-...+...|++++|.-.|+...... +-+...|..|+.+|...|++.+|..
T Consensus 312 ~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~ 389 (564)
T KOG1174|consen 312 DEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANA 389 (564)
T ss_pred hhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHH
Confidence 678899999998888875433 44555555567788899999999998887653 4578999999999999999999998
Q ss_pred HHHHHHHhCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHhCCCCCChH----hHHHHHhhcCCHHHHHHHHHHhh
Q 037477 500 LLVEMIEKVRLRPWQATFKTLI-EKLL-GARRLEEAMNLLRLMKKQNYPPFPE----PFVQYISKFGTVEDASEFLKALS 573 (639)
Q Consensus 500 ~~~~m~~~~~~~p~~~~~~~li-~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~g~~~~a~~~~~~~~ 573 (639)
+-++..+..+- +..+...+- ..|. ....-++|..++++-.+ +.|+.. ....++...|..++++.++++..
T Consensus 390 ~An~~~~~~~~--sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L 465 (564)
T KOG1174|consen 390 LANWTIRLFQN--SARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHL 465 (564)
T ss_pred HHHHHHHHhhc--chhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHH
Confidence 87776654332 333333321 1121 12234789999888776 456543 34455567899999999999887
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 574 VKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 574 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
.. .++....+.|.+.+.....+.+|.+.|..-
T Consensus 466 ~~-~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 466 II-FPDVNLHNHLGDIMRAQNEPQKAMEYYYKA 497 (564)
T ss_pred hh-ccccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 65 568888999999999999999999998874
No 88
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=0.0002 Score=66.78 Aligned_cols=441 Identities=9% Similarity=0.007 Sum_probs=234.4
Q ss_pred HHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhh-ccchhHHHHHHHHHhcCC
Q 037477 136 LRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAALNQFHDGMVKE-IAMDNVAKTLVDVVLGSD 214 (639)
Q Consensus 136 i~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 214 (639)
+.-+..++++..|+.+++--...+-.-...+-.-+-..+.+.|+++++.. .|..+... .....+.-.+.-.+--.|
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~---~Y~~~~~~~~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALN---VYTFLMNKDDAPAELGVNLACCKFYLG 105 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHH---HHHHHhccCCCCcccchhHHHHHHHHH
Confidence 44455567888888888765544322222222223445567787777654 44444443 333333322322222234
Q ss_pred chHHHHHHHhhccCcC-CHHHHHHHHHHhccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 037477 215 WDDKIGKKLEDMKIEL-SDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMK 293 (639)
Q Consensus 215 ~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 293 (639)
...++.....+.+..+ ....+..+-.++ ++.++-..+-+.+. ....---+|....--.-.+.+|.+++....
T Consensus 106 ~Y~eA~~~~~ka~k~pL~~RLlfhlahkl-ndEk~~~~fh~~Lq------D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 106 QYIEAKSIAEKAPKTPLCIRLLFHLAHKL-NDEKRILTFHSSLQ------DTLEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHh-CcHHHHHHHHHHHh------hhHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777765332 223333333332 33333333333332 112222233333333346889999999988
Q ss_pred HCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCC
Q 037477 294 KEGYEMDIDTYIKIS-RQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLS 372 (639)
Q Consensus 294 ~~g~~p~~~~~~~li-~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (639)
.. .|+-...|.-+ -+|.+..-++-+.+++.--.+. -||.. ...=+.+|...+..+...+.+-...+...+...
T Consensus 179 ~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdSt-iA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~- 252 (557)
T KOG3785|consen 179 QD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDST-IAKNLKACNLFRLINGRTAEDEKKELADNIDQE- 252 (557)
T ss_pred hc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcH-HHHHHHHHHHhhhhccchhHHHHHHHHhccccc-
Confidence 76 45555555544 4556777777777777766553 34432 222233333322222222222222222222111
Q ss_pred hhhHHHHHHHHHcc-----CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 037477 373 KSVYDGIHRALTKL-----GRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWT 447 (639)
Q Consensus 373 ~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 447 (639)
| ..+.-+++. ..-+.|++++--+.+. -| ..--.|+--|.+.+++.+|..+.+++.-. .|-....-
T Consensus 253 ---~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilK 322 (557)
T KOG3785|consen 253 ---Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILK 322 (557)
T ss_pred ---c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHH
Confidence 1 122222332 3457788877666543 22 23344566688999999999987776531 12222222
Q ss_pred HHH-----HHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 037477 448 ILI-----QGHCAANEVDRALLCFAKMMEKNYDADADL-LDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLI 521 (639)
Q Consensus 448 ~li-----~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 521 (639)
.+. +-.....+..-|.+.|+..-+.+..-|... -.++..++.-..++++.+.+++.+..- -..-|...|| +.
T Consensus 323 gvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N-~A 400 (557)
T KOG3785|consen 323 GVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLN-LA 400 (557)
T ss_pred HHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhH-HH
Confidence 221 111222345556666665555554433322 234445555566789999999888653 3444544444 57
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHh----hcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH
Q 037477 522 EKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYIS----KFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHY 597 (639)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 597 (639)
.+++..|.+.+|+++|-.+....+ .+..+|..+++ +++..+.|..++-++... .........+.+-+.+.+.+-
T Consensus 401 QAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~-~e~fsLLqlIAn~CYk~~eFy 478 (557)
T KOG3785|consen 401 QAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTP-SERFSLLQLIANDCYKANEFY 478 (557)
T ss_pred HHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCc-hhHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999977754332 34567777775 458888887776544321 112334455667788888887
Q ss_pred HHHHHHhhC
Q 037477 598 EAKDLLYKC 606 (639)
Q Consensus 598 ~A~~~~~~m 606 (639)
-|.+.|+..
T Consensus 479 yaaKAFd~l 487 (557)
T KOG3785|consen 479 YAAKAFDEL 487 (557)
T ss_pred HHHHhhhHH
Confidence 777777665
No 89
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=0.00015 Score=71.99 Aligned_cols=281 Identities=12% Similarity=0.106 Sum_probs=178.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHH
Q 037477 298 EMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYD 377 (639)
Q Consensus 298 ~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (639)
.-+......-..-+...+++.+..++++...+. .++....+..-|.++...++ ....+.+-..+.+. .+....+|-
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~--~n~Lf~lsh~LV~~-yP~~a~sW~ 316 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGK--SNKLFLLSHKLVDL-YPSKALSWF 316 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcc--cchHHHHHHHHHHh-CCCCCcchh
Confidence 345555555566666667777777777666653 23334444444445554443 22333333333322 223456677
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHH
Q 037477 378 GIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEEN--GCIPDIKTWTILIQGHCA 455 (639)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~t~~~li~~~~~ 455 (639)
++.--|...|+..+|.+.|.+..... +.=...|-.....|+-.|..|.|+..+....+. |.. -+..| +.--|.+
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LY--lgmey~~ 392 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLY--LGMEYMR 392 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHH--HHHHHHH
Confidence 77777777899999999998876543 122457888888888899999998888776653 221 11222 3345677
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHHhcCCH
Q 037477 456 ANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEK----VRLR-PWQATFKTLIEKLLGARRL 530 (639)
Q Consensus 456 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-p~~~~~~~li~~~~~~g~~ 530 (639)
.++.+.|.+.|.+..... +-|+...+-+--..-+.+.+.+|..+|+..... ..-+ -+..+++.|-.+|.+.+.+
T Consensus 393 t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred hccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 888899999998887653 446666776666666778888998888876521 1111 2566788888888999999
Q ss_pred HHHHHHHHHHHhCC-CCCChHhHHHH-HhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 037477 531 EEAMNLLRLMKKQN-YPPFPEPFVQY-ISKFGTVEDASEFLKALSVKEYPSSAAYLQVF 587 (639)
Q Consensus 531 ~~A~~~~~~m~~~~-~~p~~~~~~~l-l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 587 (639)
++|+..+++..... ..++..+-..+ ....|+++.|++.|.+.....|.+..+-..|-
T Consensus 472 ~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 472 EEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 99999998887632 12222222222 35779999999999888877665544444433
No 90
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=0.0022 Score=68.19 Aligned_cols=312 Identities=16% Similarity=0.163 Sum_probs=160.9
Q ss_pred cChHHHHHHHHHHhcc-CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037477 244 IYPVKALGFFRWVGEH-SGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVK 322 (639)
Q Consensus 244 ~~~~~A~~~f~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 322 (639)
+.+.+-+++++.+.-+ ..+.-+...-|.||-...+. +...+.+..+++..-. .|+ +...+..++-+++|..
T Consensus 998 dLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEEAF~ 1069 (1666)
T KOG0985|consen 998 DLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APD------IAEIAIENQLYEEAFA 1069 (1666)
T ss_pred CCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHHHHH
Confidence 3445555666555322 22233334445555444443 3344444455444332 111 2333455666777777
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHC
Q 037477 323 LFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNA 402 (639)
Q Consensus 323 l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 402 (639)
+|+..- .+....+.|+.-.. .++.+.+..+.. ..+.+|..+..+-.+.|.+.+|.+-|-+.
T Consensus 1070 ifkkf~-----~n~~A~~VLie~i~-----~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAieSyika--- 1130 (1666)
T KOG0985|consen 1070 IFKKFD-----MNVSAIQVLIENIG-----SLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAIESYIKA--- 1130 (1666)
T ss_pred HHHHhc-----ccHHHHHHHHHHhh-----hHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHHHHHHhc---
Confidence 777652 33444444443222 122222222211 23456677777777777777776665432
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 037477 403 GFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLD 482 (639)
Q Consensus 403 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 482 (639)
-|+..|..+++...+.|.+++-.+.+...++..-.|.+. +.||-+|++.++..+..+++ ..||.....
T Consensus 1131 ---dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~ 1198 (1666)
T KOG0985|consen 1131 ---DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQ 1198 (1666)
T ss_pred ---CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHH
Confidence 255567777777777777777777666666555444433 45666777777665544443 235555555
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----------------------
Q 037477 483 VLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLM---------------------- 540 (639)
Q Consensus 483 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---------------------- 540 (639)
.+-+-|...|.++.|.-+|.... -|..+...+...|+++.|.+.-.+.
T Consensus 1199 ~vGdrcf~~~~y~aAkl~y~~vS----------N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA 1268 (1666)
T KOG0985|consen 1199 QVGDRCFEEKMYEAAKLLYSNVS----------NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLA 1268 (1666)
T ss_pred HHhHHHhhhhhhHHHHHHHHHhh----------hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHH
Confidence 55555556666665555554321 2333333444444444433322221
Q ss_pred --HhCCCCCCh---HhHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHh
Q 037477 541 --KKQNYPPFP---EPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEG--RHYEAKDLLY 604 (639)
Q Consensus 541 --~~~~~~p~~---~~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~ 604 (639)
.-..+.... .-+...+...|-+++-+.+++............|+-|.-.|.+-. +.-|-+++|-
T Consensus 1269 QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskykp~km~EHl~LFw 1339 (1666)
T KOG0985|consen 1269 QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYKPEKMMEHLKLFW 1339 (1666)
T ss_pred HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 111111111 223444456688888888887777666667777877777776543 3334444443
No 91
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.55 E-value=1.1e-06 Score=84.11 Aligned_cols=148 Identities=21% Similarity=0.250 Sum_probs=71.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----HHcCC
Q 037477 417 GLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLING----FLSQK 492 (639)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~----~~~~g 492 (639)
.+...|++++|+++++.- .+.......+..|.+.++++.|.+.++.|.+.+ .|.. ...|..+ +....
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~-l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDSI-LTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCHH-HHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHH-HHHHHHHHHHHHhCch
Confidence 344456666666555431 245555556666666666666666666665432 2322 2222222 22223
Q ss_pred ChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHH---hhcCCH-HHHHHH
Q 037477 493 RVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYI---SKFGTV-EDASEF 568 (639)
Q Consensus 493 ~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll---~~~g~~-~~a~~~ 568 (639)
.+.+|..+|+++.+++ .++..+.+.+..++...|++++|.+++.+..+.. +-+..++..++ ...|+. +.+.++
T Consensus 182 ~~~~A~y~f~El~~~~--~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKF--GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp CCCHHHHHHHHHHCCS----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 4666666666665432 3455556666666666666666666666554322 11223333333 123443 444455
Q ss_pred HHHhhcCC
Q 037477 569 LKALSVKE 576 (639)
Q Consensus 569 ~~~~~~~~ 576 (639)
+.++....
T Consensus 259 l~qL~~~~ 266 (290)
T PF04733_consen 259 LSQLKQSN 266 (290)
T ss_dssp HHHCHHHT
T ss_pred HHHHHHhC
Confidence 55555443
No 92
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.50 E-value=0.00029 Score=72.84 Aligned_cols=158 Identities=13% Similarity=0.134 Sum_probs=91.0
Q ss_pred CChHHHHHHHH--HHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhhccchhHHH
Q 037477 127 PSSTVYSLMLR--NLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAALNQFHDGMVKEIAMDNVAK 204 (639)
Q Consensus 127 ~~~~~~~~li~--~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (639)
-|..+--+|++ .|.--|+++.|.+-.+-++ +..+|..+-+.|.+..+.+-+.....-+.+...
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRg--------- 788 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARG--------- 788 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhh---------
Confidence 46666677775 4677899999988887766 457799999999998877655433222221110
Q ss_pred HHHHHHhcCCchHHHHHHHhhcc-CcCCHHHHHHHHHHhccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChh
Q 037477 205 TLVDVVLGSDWDDKIGKKLEDMK-IELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVR 283 (639)
Q Consensus 205 ~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 283 (639)
.+.+++.. ..-....-..+|.---+..++|+.+|++..+ |..|=..|-..|.++
T Consensus 789 ---------------aRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~ 843 (1416)
T KOG3617|consen 789 ---------------ARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR----------YDLLNKLYQSQGMWS 843 (1416)
T ss_pred ---------------HHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHH
Confidence 01111110 0001122222333223566777877777631 334445566677888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 037477 284 DFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFM 327 (639)
Q Consensus 284 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m 327 (639)
+|.++-+.=..-. =-.||..-..-+-..++.+.|++.|+..
T Consensus 844 eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 844 EAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred HHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 8877655422211 2345555556666677788888887765
No 93
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.50 E-value=2.1e-05 Score=85.58 Aligned_cols=211 Identities=15% Similarity=0.140 Sum_probs=169.5
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC---CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 037477 391 EAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEEN-GCI---PDIKTWTILIQGHCAANEVDRALLCF 466 (639)
Q Consensus 391 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~---p~~~t~~~li~~~~~~g~~~~a~~~~ 466 (639)
.|.++-...... +.+...|-..|......++.++|.+++++.... +++ --...|.++++.-..-|.-+...++|
T Consensus 1443 saeDferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1443 SAEDFERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CHHHHHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 344443333332 445678999999999999999999999998753 111 12357888888888888889999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 037477 467 AKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYP 546 (639)
Q Consensus 467 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 546 (639)
+++.+.. . ....|..|...|.+.+++++|-++++.|.++++. ....|...++.+.+..+-+.|..++++..+.-.+
T Consensus 1521 eRAcqyc-d-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q--~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1521 ERACQYC-D-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ--TRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred HHHHHhc-c-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc--hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 9998863 2 2566889999999999999999999999998774 4558999999999999999999999998874222
Q ss_pred CChH----hHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037477 547 PFPE----PFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCP 607 (639)
Q Consensus 547 p~~~----~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 607 (639)
-... -|..+--++|+.+.++.+|+......|.....|+..++.=.+.|+.+.+.++|++.-
T Consensus 1597 ~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi 1661 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVI 1661 (1710)
T ss_pred hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 1122 334455699999999999999999999999999999999999999999999999853
No 94
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.49 E-value=2.3e-05 Score=74.98 Aligned_cols=226 Identities=18% Similarity=0.153 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 037477 266 TITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRS 345 (639)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~ 345 (639)
......+.+++...|+.+.++ .++.... .|.......+...+...++-+.++.-+++....+..++..++ .++.+
T Consensus 35 ~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~-~~~~A 109 (290)
T PF04733_consen 35 LERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIV-QLLAA 109 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHH-HHHHH
Confidence 344455666677777665433 3333332 555555544444443334555555555555444333222222 23333
Q ss_pred HhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----c
Q 037477 346 ISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCK----A 421 (639)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~ 421 (639)
..-....+.+.+.++... ..+.......+.+|.+.++++.|.+.++.|.+. ..|. +...+..++.. .
T Consensus 110 ~i~~~~~~~~~AL~~l~~------~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHK------GGSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTT------TTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHc------cCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCc
Confidence 333333333333332221 123344445666777777777777777777654 2232 23333333332 2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh-hHHHHH
Q 037477 422 GRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRV-NGAYKL 500 (639)
Q Consensus 422 g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~ 500 (639)
+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+.+ +-+..+...++.+....|+. +.+.++
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 3567777777776543 34566667777777777777777777777766543 23455555566666666665 556666
Q ss_pred HHHHHHh
Q 037477 501 LVEMIEK 507 (639)
Q Consensus 501 ~~~m~~~ 507 (639)
+.++...
T Consensus 259 l~qL~~~ 265 (290)
T PF04733_consen 259 LSQLKQS 265 (290)
T ss_dssp HHHCHHH
T ss_pred HHHHHHh
Confidence 6666654
No 95
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.49 E-value=0.00028 Score=80.91 Aligned_cols=331 Identities=15% Similarity=0.074 Sum_probs=185.5
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcC--CC----CCCHHHHHHHHHHHhhc
Q 037477 276 LARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDG--PY----KPSVQDCSLLLRSISSI 349 (639)
Q Consensus 276 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--g~----~p~~~~~~~ll~~~~~~ 349 (639)
+...|+++.+...++.+.......+..........+...|+++++..++....+. .. .+....-...+.+....
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 4445666666666655422111112222233344445667777777777665432 00 11111111112222222
Q ss_pred CCCchhHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHccCChhHHHHHHHHHHHCCC---CCC--HHhHHHHHHHHHh
Q 037477 350 NNPDLGLVFRVANKYESLGNSLS----KSVYDGIHRALTKLGRFDEAEKMMKAMKNAGF---EPD--NITYSQVIFGLCK 420 (639)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~~~--~~~~~~li~~~~~ 420 (639)
...+.+.+....+.........+ ....+.+...+...|++++|...+++.....- .+. ..++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 33355555555555443211111 12345556667788999999998888764311 111 2344556667788
Q ss_pred cCCHHHHHHHHHHHHH----CCCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCC--CHHHHHHHHHHHH
Q 037477 421 AGRFEDACNVLDEMEE----NGCI--P-DIKTWTILIQGHCAANEVDRALLCFAKMMEK--NYDA--DADLLDVLINGFL 489 (639)
Q Consensus 421 ~g~~~~A~~~~~~m~~----~~~~--p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~--~~~~~~~li~~~~ 489 (639)
.|++++|...+++... .+.. + ....+..+...+...|++++|...+.+.... ...+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 9999999998887654 2211 1 2233445556677789999999988887653 1112 1233444556777
Q ss_pred cCCChhHHHHHHHHHHHhCCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh------HhHHHHHhh
Q 037477 490 SQKRVNGAYKLLVEMIEKVRLRPWQATF-----KTLIEKLLGARRLEEAMNLLRLMKKQNYPPFP------EPFVQYISK 558 (639)
Q Consensus 490 ~~g~~~~A~~~~~~m~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~ll~~ 558 (639)
..|++++|...++..............+ ...+..+...|+.+.|.+++............ .....++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 8899999999888875421111111111 11224445578899999887765542211111 122233457
Q ss_pred cCCHHHHHHHHHHhhcC---C--C-CCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 559 FGTVEDASEFLKALSVK---E--Y-PSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 559 ~g~~~~a~~~~~~~~~~---~--~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
.|+.++|...+++.... . + ....++..+..+|.+.|+.++|.+.+.+.
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~A 757 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEA 757 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 79999999988887654 1 1 12345667788888999999998888874
No 96
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.48 E-value=0.0019 Score=64.17 Aligned_cols=171 Identities=11% Similarity=0.003 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCChhHHHHHH
Q 037477 424 FEDACNVLDEMEEN-GCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDA-DADLLDVLINGFLSQKRVNGAYKLL 501 (639)
Q Consensus 424 ~~~A~~~~~~m~~~-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~ 501 (639)
.+....+++++... .+.|+ -+|-..|..-.+..-++.|..+|.+..+.+..+ ++.++++++.-||. ++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 55666667666543 23343 467778888888888999999999999988777 77888888887774 6778999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh--HhHHHHH---hhcCCHHHHHHHHHHhhcCC
Q 037477 502 VEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFP--EPFVQYI---SKFGTVEDASEFLKALSVKE 576 (639)
Q Consensus 502 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll---~~~g~~~~a~~~~~~~~~~~ 576 (639)
+--.+++|-.|- --...++-+...|+-..|..+|++....++.|+- ..|..++ +..|+++.+.++-+++....
T Consensus 425 eLGLkkf~d~p~--yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af 502 (656)
T KOG1914|consen 425 ELGLKKFGDSPE--YVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAF 502 (656)
T ss_pred HHHHHhcCCChH--HHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhc
Confidence 987777654443 4466778888889999999999999988666654 4566666 57799999988888777664
Q ss_pred CCC----HHHHHHHHHHHHhcCCHHH
Q 037477 577 YPS----SAAYLQVFESFFNEGRHYE 598 (639)
Q Consensus 577 ~~~----~~~~~~l~~~~~~~g~~~~ 598 (639)
+.+ -..-..+++.|.-.+.+..
T Consensus 503 ~~~qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 503 PADQEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred chhhcCCCChHHHHHHHHhhcccccc
Confidence 411 1123345555555554443
No 97
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.46 E-value=0.0031 Score=65.43 Aligned_cols=198 Identities=8% Similarity=-0.036 Sum_probs=116.6
Q ss_pred CCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCchhhHH
Q 037477 106 DNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDH-CYIEEETYLSILGVLKKAKKASDLA 184 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g-~~~~~~t~~~ll~~~~~~~~~~~~~ 184 (639)
+|.++.+-+.|+.... +.--....|+.+-..+.-.|.-..|+.++++-.... .++|...+-..-+.|.+. .+.++
T Consensus 336 ~g~f~~lae~fE~~~~--~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~--l~~~e 411 (799)
T KOG4162|consen 336 CGQFEVLAEQFEQALP--FSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIER--LKLVE 411 (799)
T ss_pred HHHHHHHHHHHHHHhH--hhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhc--hhhhh
Confidence 5777777788877664 222345677777777777777777887777644332 223444444444444432 23333
Q ss_pred HHHHHHHHHhhhccchhHHHHHHHHHhc-CCchHHHHHHHhhcc------CcCCHHHHHHHHHHhccChHHHHHHHHHHh
Q 037477 185 ALNQFHDGMVKEIAMDNVAKTLVDVVLG-SDWDDKIGKKLEDMK------IELSDNFVLTVLKELRIYPVKALGFFRWVG 257 (639)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~ 257 (639)
.+.++-..++. .+.. .+........+.+.. ....+..- .....+++..+++..
T Consensus 412 egldYA~kai~-------------~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR-------~~~h~kslqale~av 471 (799)
T KOG4162|consen 412 EGLDYAQKAIS-------------LLGGQRSHLKPRGYLFLGIAYGFQARQANLKSER-------DALHKKSLQALEEAV 471 (799)
T ss_pred hHHHHHHHHHH-------------HhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHH-------HHHHHHHHHHHHHHH
Confidence 33333333322 1100 000000001111100 00011000 122446788888886
Q ss_pred ccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 037477 258 EHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMD 329 (639)
Q Consensus 258 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 329 (639)
+..+-.|++..|-++- |+..++++.|.+...+..+.+-.-+...|..+.-.+...+++.+|+.+.+....
T Consensus 472 ~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 472 QFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred hcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 6666677776665554 666778999999999999886677899999999999999999999999887654
No 98
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.44 E-value=8.5e-05 Score=75.97 Aligned_cols=202 Identities=16% Similarity=0.155 Sum_probs=151.1
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 037477 376 YDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCA 455 (639)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~ 455 (639)
|...|.+|+..|+.++|..+..+..++ +||...|..+.+......-+++|.++++..-.. .-..+.....+
T Consensus 427 w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~ 497 (777)
T KOG1128|consen 427 WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILS 497 (777)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhcccccc
Confidence 666888999999999999998888874 789999998888887777788899888775432 11111122234
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 037477 456 ANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW-QATFKTLIEKLLGARRLEEAM 534 (639)
Q Consensus 456 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~ 534 (639)
.++++++.+.|+.-.+.+ ..-..+|-.+-.+..+.++++.|.+.|..... ..|+ ...||.+-.+|.+.|+..+|.
T Consensus 498 ~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvt---L~Pd~~eaWnNls~ayi~~~~k~ra~ 573 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT---LEPDNAEAWNNLSTAYIRLKKKKRAF 573 (777)
T ss_pred chhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhh---cCCCchhhhhhhhHHHHHHhhhHHHH
Confidence 788999999998877754 34567787888888899999999999998764 3565 668999999999999999999
Q ss_pred HHHHHHHhCCCCCChH---hHHHHHhhcCCHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHH
Q 037477 535 NLLRLMKKQNYPPFPE---PFVQYISKFGTVEDASEFLKALSVK--EYPSSAAYLQVFESFF 591 (639)
Q Consensus 535 ~~~~~m~~~~~~p~~~---~~~~ll~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~ 591 (639)
..+++..+.+ .-++. -|..+..+-|.+++|.+++.++... ...+.++...++....
T Consensus 574 ~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 574 RKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred HHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHH
Confidence 9999998866 33333 3444446889999999999888765 3335565555555544
No 99
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.43 E-value=0.00073 Score=69.10 Aligned_cols=287 Identities=14% Similarity=0.124 Sum_probs=155.5
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcC
Q 037477 271 GILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSIN 350 (639)
Q Consensus 271 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~ 350 (639)
+.|..|.+.|....|.+....=.. +..|......+..++.+..-+++|-.+|+.+.. | .-.+.++.+..
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d----~-----dkale~fkkgd 688 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHD----F-----DKALECFKKGD 688 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC----H-----HHHHHHHHccc
Confidence 456677777777766554322111 123555555555556665556666666665532 1 11111111111
Q ss_pred CCchhHHHHHHHHHHhcCCCCChhhH-HHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 037477 351 NPDLGLVFRVANKYESLGNSLSKSVY-DGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACN 429 (639)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 429 (639)
....+.++.+. ..+..++.. ...-.-+...|+++.|..-|-+.. ...-.+.+-.....|.+|+.
T Consensus 689 --af~kaielarf----afp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ 753 (1636)
T KOG3616|consen 689 --AFGKAIELARF----AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAIS 753 (1636)
T ss_pred --HHHHHHHHHHh----hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHh
Confidence 01111111110 111111111 112223344556666655554332 11233455667788888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCC
Q 037477 430 VLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVR 509 (639)
Q Consensus 430 ~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 509 (639)
+++.++..... ..-|..+.+.|+..|+++.|.++|.+. ..++-.|.+|.+.|++++|.++-.+.. |
T Consensus 754 ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~---~ 819 (1636)
T KOG3616|consen 754 ILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECH---G 819 (1636)
T ss_pred HHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhc---C
Confidence 88888775432 344677788888889998888888542 235667788889999988888877653 4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------CCCCCC----------------hHhHHHHHhhcCCHH
Q 037477 510 LRPWQATFKTLIEKLLGARRLEEAMNLLRLMKK----------QNYPPF----------------PEPFVQYISKFGTVE 563 (639)
Q Consensus 510 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------~~~~p~----------------~~~~~~ll~~~g~~~ 563 (639)
.......|-+-..-+-+.|++.+|.+++-.+.+ .|...| ...|..-+...|++.
T Consensus 820 ~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lk 899 (1636)
T KOG3616|consen 820 PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLK 899 (1636)
T ss_pred chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChh
Confidence 444566666666666677777777666532211 111111 111222223445555
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 037477 564 DASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYK 605 (639)
Q Consensus 564 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 605 (639)
.|+.-|-+. .-|.+-++.|-..+.|++|.++-+.
T Consensus 900 aae~~flea--------~d~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 900 AAEEHFLEA--------GDFKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred HHHHHHHhh--------hhHHHHHHHhhhhhhHHHHHHHHhc
Confidence 555544332 3366778888888888888887765
No 100
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.37 E-value=0.00032 Score=76.81 Aligned_cols=226 Identities=9% Similarity=0.018 Sum_probs=170.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHH
Q 037477 284 DFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANK 363 (639)
Q Consensus 284 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 363 (639)
.|.++-+.+... +-+...|-..|....+.++.++|.+++++.+.. +.+. +-++-
T Consensus 1443 saeDferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~R-----------------EeeEK------ 1496 (1710)
T KOG1070|consen 1443 SAEDFERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFR-----------------EEEEK------ 1496 (1710)
T ss_pred CHHHHHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcc-----------------hhHHH------
Confidence 444443333332 456677999999999999999999999988753 1110 00111
Q ss_pred HHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 037477 364 YESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDI 443 (639)
Q Consensus 364 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 443 (639)
..+|.++++.-..-|.-+...++|++..+.- -.-..|..|...|.+.+.+++|.++|+.|.+.= .-..
T Consensus 1497 ---------LNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~ 1564 (1710)
T KOG1070|consen 1497 ---------LNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTR 1564 (1710)
T ss_pred ---------HHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchh
Confidence 1245566666666678888899999998752 224568889999999999999999999998752 2467
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037477 444 KTWTILIQGHCAANEVDRALLCFAKMMEKNYD-ADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIE 522 (639)
Q Consensus 444 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 522 (639)
..|...+..+.++++-+.|..++.+.++.=.+ -........+..-.+.|+.+.+..+|+.....+.-+-| .|+..|+
T Consensus 1565 ~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtD--lW~VYid 1642 (1710)
T KOG1070|consen 1565 KVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTD--LWSVYID 1642 (1710)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchh--HHHHHHH
Confidence 88999999999999999999999998875221 13344555566677899999999999999887544444 8999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCh
Q 037477 523 KLLGARRLEEAMNLLRLMKKQNYPPFP 549 (639)
Q Consensus 523 ~~~~~g~~~~A~~~~~~m~~~~~~p~~ 549 (639)
.-.++|+.+.+..+|++....++.|-.
T Consensus 1643 ~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1643 MEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred HHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 999999999999999999998887753
No 101
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.36 E-value=0.0034 Score=62.37 Aligned_cols=145 Identities=14% Similarity=0.126 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 037477 459 VDRALLCFAKMMEK-NYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRP-WQATFKTLIEKLLGARRLEEAMNL 536 (639)
Q Consensus 459 ~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 536 (639)
.+....++++++.. ...| ..+|..+++.-.+..-++.|..+|.+..+. +..+ ++..+++++.-||. ++.+-|.++
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mEy~cs-kD~~~AfrI 423 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALMEYYCS-KDKETAFRI 423 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHHHHhc-CChhHHHHH
Confidence 44455555555553 2333 346778888888888899999999999887 5555 78889999997765 788999999
Q ss_pred HHHHHh-CCCCCC-hHhHHHHHhhcCCHHHHHHHHHHhhcC-CC--CCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 537 LRLMKK-QNYPPF-PEPFVQYISKFGTVEDASEFLKALSVK-EY--PSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 537 ~~~m~~-~~~~p~-~~~~~~ll~~~g~~~~a~~~~~~~~~~-~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
|+.-.+ .|-.|. ...|..++...++-+.+..+|++.... .+ ...+.|..++.-=..-|+.+.+.++-+++
T Consensus 424 FeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 424 FELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 997554 333332 235667778999999999999999877 33 35588999999999999999999988875
No 102
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=0.00032 Score=63.94 Aligned_cols=263 Identities=14% Similarity=0.131 Sum_probs=151.8
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 037477 265 NTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIK-ISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLL 343 (639)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll 343 (639)
+......|..+|-+..++..|...++++-.. .|...-|.. -...+.+.+.+.+|+++...|.+. |+...-..-+
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqL 117 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQL 117 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHH
Confidence 6666777777777777888888888877655 455444432 234556777788888888777653 3333333334
Q ss_pred HHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 037477 344 RSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGR 423 (639)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 423 (639)
.+..+....|......+.++.-. .-+..+.+.......+.|+++.|.+-|+...+-+---....||..+..| +.|+
T Consensus 118 qaAIkYse~Dl~g~rsLveQlp~---en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~q 193 (459)
T KOG4340|consen 118 QAAIKYSEGDLPGSRSLVEQLPS---ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQ 193 (459)
T ss_pred HHHHhcccccCcchHHHHHhccC---CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhh
Confidence 44445555555555555544321 2233334334444557788888888888776654333455677655444 5677
Q ss_pred HHHHHHHHHHHHHCCCCC-------------CHH--------HHHHHHH-------HHHHcCCHHHHHHHHHHHHHc-CC
Q 037477 424 FEDACNVLDEMEENGCIP-------------DIK--------TWTILIQ-------GHCAANEVDRALLCFAKMMEK-NY 474 (639)
Q Consensus 424 ~~~A~~~~~~m~~~~~~p-------------~~~--------t~~~li~-------~~~~~g~~~~a~~~~~~m~~~-g~ 474 (639)
++.|++...++.++|++- |+. .-+.++. .+.+.|+.+.|.+.+-.|.-. .-
T Consensus 194 yasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~ 273 (459)
T KOG4340|consen 194 YASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEE 273 (459)
T ss_pred HHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccc
Confidence 888888888887776431 211 1122332 344667778787777776542 22
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037477 475 DADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRL 539 (639)
Q Consensus 475 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 539 (639)
..|.+|...+.-. -..+++.+..+-+.-+.+.... ...||..++-.||+..-++.|.+++.+
T Consensus 274 elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf--P~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 274 ELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF--PPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred cCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC--ChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 3455555443221 1233444444444444443222 244777777778887777777776654
No 103
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.32 E-value=0.0001 Score=69.36 Aligned_cols=167 Identities=13% Similarity=0.118 Sum_probs=100.6
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC-H---HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HH
Q 037477 372 SKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPD-N---ITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDI--KT 445 (639)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~t 445 (639)
....+-.....+...|++++|...|+++.... |+ . ..+..+..++...|++++|...++++.+....... .+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 34456667778889999999999999987753 33 2 45677888899999999999999999875432111 24
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCCCHHHHH-----------------HHHHHHHcCCChhHHHHH
Q 037477 446 WTILIQGHCAA--------NEVDRALLCFAKMMEKNYDADADLLD-----------------VLINGFLSQKRVNGAYKL 500 (639)
Q Consensus 446 ~~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~~~~~~~~-----------------~li~~~~~~g~~~~A~~~ 500 (639)
+..+..++... |+.++|.+.++.+.+.... +...+. .+...|.+.|++++|...
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 188 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINR 188 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 44445555544 6788899999888876322 222221 122334444555555555
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037477 501 LVEMIEKVRLRPW-QATFKTLIEKLLGARRLEEAMNLLRLMK 541 (639)
Q Consensus 501 ~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 541 (639)
++...+.+.-.|. ...+..+..++.+.|++++|...++.+.
T Consensus 189 ~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 189 FETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555443222221 2344445555555555555555544443
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.30 E-value=0.0036 Score=71.80 Aligned_cols=270 Identities=12% Similarity=0.037 Sum_probs=161.6
Q ss_pred HhccChHHHHHHHHHHhccCCCCC---CHHHHHHHHHHHHcCCChhHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHH
Q 037477 241 ELRIYPVKALGFFRWVGEHSGYKH---NTITYNGILRVLARHESVRDFWNVVEEMKKE----GY-EMDIDTYIKISRQFQ 312 (639)
Q Consensus 241 ~~~~~~~~A~~~f~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~~~~~li~~~~ 312 (639)
...+++++|...++...+...... -....+.+...+...|++++|...+++.... |- .....++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 446788888888887653211111 1234566667778899999999888887643 21 111334556667788
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCC---CCChhhHHHHHHHHHccCCh
Q 037477 313 KFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGN---SLSKSVYDGIHRALTKLGRF 389 (639)
Q Consensus 313 ~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 389 (639)
..|++++|...+++..+.. ...+. ......+..+...+...|++
T Consensus 543 ~~G~~~~A~~~~~~al~~~---------------------------------~~~~~~~~~~~~~~~~~la~~~~~~G~~ 589 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLI---------------------------------EEQHLEQLPMHEFLLRIRAQLLWEWARL 589 (903)
T ss_pred HCCCHHHHHHHHHHHHHHH---------------------------------HHhccccccHHHHHHHHHHHHHHHhcCH
Confidence 8999999999888765310 00000 00112233345556667899
Q ss_pred hHHHHHHHHHHHCC--CCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHH-----HHHHHHHHHcCCH
Q 037477 390 DEAEKMMKAMKNAG--FEP--DNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIP-DIKTW-----TILIQGHCAANEV 459 (639)
Q Consensus 390 ~~A~~~~~~m~~~g--~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~-----~~li~~~~~~g~~ 459 (639)
++|...+.+..... ..+ ....+..+...+...|++++|...+.+........ ....+ ...+..+...|+.
T Consensus 590 ~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 669 (903)
T PRK04841 590 DEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDK 669 (903)
T ss_pred HHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCH
Confidence 99888887765421 111 12334445566778899999988888775421100 11111 1122444567888
Q ss_pred HHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHcCCChhHHHHHHHHHHHh---CCCCCC-HHHHHHHHHHHHhcCCHHH
Q 037477 460 DRALLCFAKMMEKNYDADA---DLLDVLINGFLSQKRVNGAYKLLVEMIEK---VRLRPW-QATFKTLIEKLLGARRLEE 532 (639)
Q Consensus 460 ~~a~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~p~-~~~~~~li~~~~~~g~~~~ 532 (639)
+.|.+.+............ ..+..+..++...|++++|...+++.... .+..++ ..+...+..++.+.|+.++
T Consensus 670 ~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~ 749 (903)
T PRK04841 670 EAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSE 749 (903)
T ss_pred HHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHH
Confidence 8888887665542211111 11345566778889999998888877543 122222 2355566677888899999
Q ss_pred HHHHHHHHHhC
Q 037477 533 AMNLLRLMKKQ 543 (639)
Q Consensus 533 A~~~~~~m~~~ 543 (639)
|...+.+..+.
T Consensus 750 A~~~L~~Al~l 760 (903)
T PRK04841 750 AQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHH
Confidence 99988888764
No 105
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.30 E-value=0.00011 Score=69.03 Aligned_cols=186 Identities=11% Similarity=0.048 Sum_probs=126.8
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HH
Q 037477 405 EPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCI-PD-IKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADA--DL 480 (639)
Q Consensus 405 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~ 480 (639)
......+-.+...+...|++++|...|+++...... |. ...+..+..++...|++++|...++++.+....... .+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345667778888899999999999999998875422 11 246677888999999999999999999886422111 23
Q ss_pred HHHHHHHHHcC--------CChhHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHh
Q 037477 481 LDVLINGFLSQ--------KRVNGAYKLLVEMIEKVRLRPWQA-TFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEP 551 (639)
Q Consensus 481 ~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 551 (639)
+..+..++... |++++|.+.|+.+.+. .|+.. .+..+... +...... .. ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~------~~-----~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL------AG-----KELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH------HH-----HHHH
Confidence 44445555544 6788899999988876 34321 22222111 0011100 00 0113
Q ss_pred HHHHHhhcCCHHHHHHHHHHhhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHhhCCc
Q 037477 552 FVQYISKFGTVEDASEFLKALSVKEY---PSSAAYLQVFESFFNEGRHYEAKDLLYKCPH 608 (639)
Q Consensus 552 ~~~ll~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 608 (639)
...++...|+.++|...++...+..| .....+..+..+|.+.|++++|.++++.+..
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33445688999999999999987743 3568899999999999999999999888643
No 106
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.24 E-value=0.0012 Score=67.90 Aligned_cols=74 Identities=11% Similarity=0.090 Sum_probs=58.0
Q ss_pred ccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037477 243 RIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVK 322 (639)
Q Consensus 243 ~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 322 (639)
.|....|+.+|++.. .|.-+|.+|...|+..+|..+..+-.++ +||...|..+.+......-+++|.+
T Consensus 411 lGitksAl~I~Erle----------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawE 478 (777)
T KOG1128|consen 411 LGITKSALVIFERLE----------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWE 478 (777)
T ss_pred cchHHHHHHHHHhHH----------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHH
Confidence 366777888887763 5777888888888888888888887774 7888888888888777777888888
Q ss_pred HHHHhh
Q 037477 323 LFEFMM 328 (639)
Q Consensus 323 l~~~m~ 328 (639)
+++...
T Consensus 479 lsn~~s 484 (777)
T KOG1128|consen 479 LSNYIS 484 (777)
T ss_pred Hhhhhh
Confidence 887653
No 107
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.21 E-value=9.6e-05 Score=73.64 Aligned_cols=218 Identities=13% Similarity=0.067 Sum_probs=167.5
Q ss_pred HHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 037477 382 ALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDR 461 (639)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~ 461 (639)
-+.+.|++.+|.=.|+...+.. +-+...|.-|...-+.+++-..|+..+.+..+.... |....-.|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 3567899999999999988775 446788999999999999999999999998886543 66777788888999999999
Q ss_pred HHHHHHHHHHcCCCC--------CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037477 462 ALLCFAKMMEKNYDA--------DADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEA 533 (639)
Q Consensus 462 a~~~~~~m~~~g~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 533 (639)
|+++++..+....+- +...-+. ..+.......+..++|-++....+..+|...+..|--.|.-.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 999999887643110 0000000 112222234566777877777667556666788887778889999999
Q ss_pred HHHHHHHHhCCCCCChHhHHHH----HhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 037477 534 MNLLRLMKKQNYPPFPEPFVQY----ISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYK 605 (639)
Q Consensus 534 ~~~~~~m~~~~~~p~~~~~~~l----l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 605 (639)
.+.|+.... ++|+..++..- ++...+.++|+..+++..+..|.-..++..|.-.|...|.|+||.+.|-.
T Consensus 450 iDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 450 VDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 999999987 67877655333 45667899999999999999888888888899999999999999888765
No 108
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.19 E-value=2.3e-06 Score=52.73 Aligned_cols=35 Identities=11% Similarity=0.188 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCH
Q 037477 130 TVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEE 164 (639)
Q Consensus 130 ~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~ 164 (639)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
No 109
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.16 E-value=0.0014 Score=71.19 Aligned_cols=172 Identities=12% Similarity=0.078 Sum_probs=88.8
Q ss_pred CCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHH
Q 037477 261 GYKH-NTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMD-IDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQD 338 (639)
Q Consensus 261 ~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~ 338 (639)
++.| +...+..|+..+...|++++|.++.+...+. .|+ ...|-.+...+.+.++..++..+ .+.+. .+...-
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--~~~~~~ 98 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDS--FSQNLK 98 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh--cccccc
Confidence 3444 6788999999999999999999999976665 343 33344444466777776666555 22211 111111
Q ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 037477 339 CSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGL 418 (639)
Q Consensus 339 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 418 (639)
|+.+- .+...+... ..+...+-.+..+|-+.|+.++|..+++++.+.. +-|+...|.+...|
T Consensus 99 ~~~ve---------------~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ 160 (906)
T PRK14720 99 WAIVE---------------HICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSY 160 (906)
T ss_pred hhHHH---------------HHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHH
Confidence 11111 111111110 1111234445555555555555555555555544 33445555555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 037477 419 CKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEK 472 (639)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 472 (639)
... ++++|.+++.+.... |...+++..+.++|.++...
T Consensus 161 ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 161 EEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 555 555555555444432 34444555555555555544
No 110
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=0.011 Score=59.49 Aligned_cols=129 Identities=16% Similarity=0.107 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHc--CCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhCCCCCC
Q 037477 479 DLLDVLINGFLS--QKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLR--------LMKKQNYPPF 548 (639)
Q Consensus 479 ~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~~~~p~ 548 (639)
..+..++..+.+ .....++..++....+.+.. -....--.++......|+++.|++++. .+.+.+..|.
T Consensus 340 ~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~-~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~ 418 (652)
T KOG2376|consen 340 SLFPILLQEATKVREKKHKKAIELLLQFADGHPE-KSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG 418 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCc-hhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh
Confidence 334444443322 22467788888777664221 124455566777788999999999999 6666666776
Q ss_pred hHhH-HHHHhhcCCHHHHHHHHHHhhcC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCc
Q 037477 549 PEPF-VQYISKFGTVEDASEFLKALSVK-------EYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPH 608 (639)
Q Consensus 549 ~~~~-~~ll~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 608 (639)
...+ ..++.+.++.+.|..++.+.... .+.-...+..++..-.+.|+-++|..+++++.+
T Consensus 419 ~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k 486 (652)
T KOG2376|consen 419 TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK 486 (652)
T ss_pred HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH
Confidence 6544 44455666666666666655433 122233444455555688999999999999744
No 111
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=0.0054 Score=55.52 Aligned_cols=129 Identities=21% Similarity=0.243 Sum_probs=65.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----cC
Q 037477 416 FGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFL----SQ 491 (639)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~----~~ 491 (639)
..|+..|++++|++..+... +......=+..+.+....+-|.+.+++|.+-. +..|.+-|..++. ..
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccc
Confidence 34555666666665554411 22222222333445555566666666665532 3344443433332 23
Q ss_pred CChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHH
Q 037477 492 KRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYI 556 (639)
Q Consensus 492 g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 556 (639)
+++.+|.-+|++|.++ ..|+..+.+.+..++...|++++|..++++..... ..+..++..++
T Consensus 187 ek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nli 248 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLI 248 (299)
T ss_pred hhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHH
Confidence 4466666666666543 34455556666666666666666666666665532 22344444443
No 112
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.14 E-value=3.4e-06 Score=51.50 Aligned_cols=34 Identities=18% Similarity=0.171 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCC
Q 037477 129 STVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYI 162 (639)
Q Consensus 129 ~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~ 162 (639)
+.+||.+|.+|++.|+++.|..+|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999987
No 113
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.13 E-value=0.011 Score=58.42 Aligned_cols=154 Identities=16% Similarity=0.059 Sum_probs=115.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChh
Q 037477 417 GLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDAD-ADLLDVLINGFLSQKRVN 495 (639)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~ 495 (639)
.+...|++++|+..++.+...-. -|...+....+.+.+.++.++|.+.++++... .|+ ....-.+-++|.+.|++.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 34567899999999999887642 25666677788889999999999999999886 444 556667778899999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHhhcCCHHHHHHHHHHhhcC
Q 037477 496 GAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYISKFGTVEDASEFLKALSVK 575 (639)
Q Consensus 496 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~g~~~~a~~~~~~~~~~ 575 (639)
+|..+++...... +-|...|..|.++|...|+..++.....++. .-.|+++.|+..+....+.
T Consensus 392 eai~~L~~~~~~~--p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~---------------~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 392 EAIRILNRYLFND--PEDPNGWDLLAQAYAELGNRAEALLARAEGY---------------ALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHhhcC--CCCchHHHHHHHHHHHhCchHHHHHHHHHHH---------------HhCCCHHHHHHHHHHHHHh
Confidence 9999999887653 3345589999999999999888877666554 4568888888888877776
Q ss_pred CCC---CHHHHHHHHHHH
Q 037477 576 EYP---SSAAYLQVFESF 590 (639)
Q Consensus 576 ~~~---~~~~~~~l~~~~ 590 (639)
... ++.-+...++..
T Consensus 455 ~~~~~~~~aR~dari~~~ 472 (484)
T COG4783 455 VKLGFPDWARADARIDQL 472 (484)
T ss_pred ccCCcHHHHHHHHHHHHH
Confidence 433 333344444443
No 114
>PLN02789 farnesyltranstransferase
Probab=98.11 E-value=0.0046 Score=60.20 Aligned_cols=214 Identities=12% Similarity=0.101 Sum_probs=136.5
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHh
Q 037477 269 YNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFR-MMEDAVKLFEFMMDGPYKPSVQDCSLLLRSIS 347 (639)
Q Consensus 269 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~ 347 (639)
++.+-..+...++.++|+.+.+++.+.. +-+..+|+.--.++...| ++++++..++.+.+...+.-
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkny------------ 106 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNY------------ 106 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcch------------
Confidence 3444445666788899999999988763 224455666655666666 57888888888776422111
Q ss_pred hcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCC--hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHH
Q 037477 348 SINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGR--FDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFE 425 (639)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 425 (639)
.+|+.--..+.+.|+ .++++.+++.+.+.. +-+..+|+.....+...|+++
T Consensus 107 --------------------------qaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~ 159 (320)
T PLN02789 107 --------------------------QIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWE 159 (320)
T ss_pred --------------------------HHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHH
Confidence 112211112223333 256777787777665 457788888888888889999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CC----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC----CCh
Q 037477 426 DACNVLDEMEENGCIPDIKTWTILIQGHCAA---NE----VDRALLCFAKMMEKNYDADADLLDVLINGFLSQ----KRV 494 (639)
Q Consensus 426 ~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~---g~----~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~----g~~ 494 (639)
++++.++++.+.+.. |...|+.....+.+. |. .+...+...+++... +-|...|+-+...+... +..
T Consensus 160 eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~ 237 (320)
T PLN02789 160 DELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSD 237 (320)
T ss_pred HHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccc
Confidence 999999999887765 667777666555544 22 245667776777654 44677777777777663 344
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 037477 495 NGAYKLLVEMIEKVRLRPWQATFKTLIEKLLG 526 (639)
Q Consensus 495 ~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 526 (639)
.+|..++.+..+. + ..+......|++.|+.
T Consensus 238 ~~~~~~~~~~~~~-~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 238 PEVSSVCLEVLSK-D-SNHVFALSDLLDLLCE 267 (320)
T ss_pred hhHHHHHHHhhcc-c-CCcHHHHHHHHHHHHh
Confidence 5677777776542 1 2234556666776664
No 115
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.10 E-value=4.1e-06 Score=51.56 Aligned_cols=33 Identities=30% Similarity=0.477 Sum_probs=21.3
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC
Q 037477 268 TYNGILRVLARHESVRDFWNVVEEMKKEGYEMD 300 (639)
Q Consensus 268 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 300 (639)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
No 116
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.026 Score=60.50 Aligned_cols=482 Identities=12% Similarity=0.092 Sum_probs=241.4
Q ss_pred HHHHhcCCcHHHHHHHhhhCCCCCHHHHHHHHHhcCCChHHHHHHHHHHhhc-CCCCCChHHHHHHHHHHhccCChHHHH
Q 037477 71 ELILACDWSDELENKLEELSPKLTHESVVYVLRKLDNDPEKASAFFNWVCDK-KQFRPSSTVYSLMLRNLVNKDSLKQFW 149 (639)
Q Consensus 71 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~ 149 (639)
.+|..|+-..-+...-+-+-.+.++++...+|.. .++. -+++.+..... .+-..|+.--..-+.++...+-..+-+
T Consensus 928 elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e--~n~~-rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLI 1004 (1666)
T KOG0985|consen 928 ELINVCNENSLFKSQARYLVERSDPDLWAKVLNE--ENPY-RRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELI 1004 (1666)
T ss_pred HHHHhcCchhHHHHHHHHHHhccChHHHHHHHhc--cChH-HHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHH
Confidence 4455555544444444444455667777777654 2222 13344444331 223356677777888999999999999
Q ss_pred HHHHHHHhcC--CCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCchHHHHHHHhhcc
Q 037477 150 VTLRRMKEDH--CYIEEETYLSILGVLKKAKKASDLAALNQFHDGMVKEIAMDNVAKTLVDVVLGSDWDDKIGKKLEDMK 227 (639)
Q Consensus 150 ~l~~~m~~~g--~~~~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 227 (639)
+++++..-.. +.-+...-+.||-...+..+ ..+-+..+.+-.... +++ ..+....+-.+++...+++..
T Consensus 1005 ELLEKIvL~~S~Fse~~nLQnLLiLtAikad~----trVm~YI~rLdnyDa-~~i----a~iai~~~LyEEAF~ifkkf~ 1075 (1666)
T KOG0985|consen 1005 ELLEKIVLDNSVFSENRNLQNLLILTAIKADR----TRVMEYINRLDNYDA-PDI----AEIAIENQLYEEAFAIFKKFD 1075 (1666)
T ss_pred HHHHHHhcCCcccccchhhhhhHHHHHhhcCh----HHHHHHHHHhccCCc-hhH----HHHHhhhhHHHHHHHHHHHhc
Confidence 9999887553 11222333445544444421 122222222222111 112 222223344556666666654
Q ss_pred CcCCHHHHHHHHHHhccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 037477 228 IELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKI 307 (639)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 307 (639)
.. ...+.++-+--+..+.|.++-++.. ....|..+..+-.+.|.+.+|.+-|-+. -|+..|..+
T Consensus 1076 ~n---~~A~~VLie~i~~ldRA~efAe~~n-------~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eV 1139 (1666)
T KOG0985|consen 1076 MN---VSAIQVLIENIGSLDRAYEFAERCN-------EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEV 1139 (1666)
T ss_pred cc---HHHHHHHHHHhhhHHHHHHHHHhhC-------ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHH
Confidence 32 2223333333455667777766653 3457888888888888888887766432 277889999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC
Q 037477 308 SRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLG 387 (639)
Q Consensus 308 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 387 (639)
+....+.|.|++-.+++....+..-.|...+ .|+-+|++.+. .. +++..-..|+..-...+-+-|...|
T Consensus 1140 i~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~r--l~-------elE~fi~gpN~A~i~~vGdrcf~~~ 1208 (1666)
T KOG0985|consen 1140 IDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNR--LT-------ELEEFIAGPNVANIQQVGDRCFEEK 1208 (1666)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhch--HH-------HHHHHhcCCCchhHHHHhHHHhhhh
Confidence 9999999999999988887777766666543 56666666553 11 1122222334333444444444445
Q ss_pred ChhHHHHHHHHHHHC--------------------CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 037477 388 RFDEAEKMMKAMKNA--------------------GFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWT 447 (639)
Q Consensus 388 ~~~~A~~~~~~m~~~--------------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 447 (639)
.++.|.-+|.....- .-..+..||..+-.+|...+.+.-| +|-...+.....-..
T Consensus 1209 ~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLe 1283 (1666)
T KOG0985|consen 1209 MYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELE 1283 (1666)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHH
Confidence 555444444322100 0011333444444444443333222 111111222333445
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 037477 448 ILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGA 527 (639)
Q Consensus 448 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 527 (639)
-++.-|-..|-+++...+++...... +.....|+-|.-.|++- ++++..+-++-...+-+ .-.+|+++-++
T Consensus 1284 eli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvN-------ipKviRA~eqa 1354 (1666)
T KOG0985|consen 1284 ELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVN-------IPKVIRAAEQA 1354 (1666)
T ss_pred HHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcc-------hHHHHHHHHHH
Confidence 56666666666666665555443221 22344455555455543 33444333333322211 12334444444
Q ss_pred CCHHHHHHHHHHHHh----------C-CCCCChHhHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCH
Q 037477 528 RRLEEAMNLLRLMKK----------Q-NYPPFPEPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRH 596 (639)
Q Consensus 528 g~~~~A~~~~~~m~~----------~-~~~p~~~~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 596 (639)
..|.+..-++.+-.+ + .-.-+...|..++.+-.+++--.+..+-..+. .+...+-|+.++.-.=+.
T Consensus 1355 hlW~ElvfLY~~y~eyDNAa~tmm~h~teaw~~~~FKdii~kVaNvElyYkAi~FYl~~---~P~llnDlL~vL~pRlDh 1431 (1666)
T KOG0985|consen 1355 HLWSELVFLYDKYEEYDNAALTMMEHPTEAWDHGQFKDIITKVANVELYYKAIQFYLDF---HPLLLNDLLTVLSPRLDH 1431 (1666)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHhCChhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHh---ChHHHHHHHHhcccccCc
Confidence 444444444433222 1 01112234455555555554433333333332 445556666666655566
Q ss_pred HHHHHHHhhCCc
Q 037477 597 YEAKDLLYKCPH 608 (639)
Q Consensus 597 ~~A~~~~~~m~~ 608 (639)
..+..+|.+...
T Consensus 1432 ~r~v~~f~K~~~ 1443 (1666)
T KOG0985|consen 1432 TRTVSIFSKAGQ 1443 (1666)
T ss_pred hHHHHHHHhcCC
Confidence 667777776543
No 117
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.07 E-value=0.026 Score=59.93 Aligned_cols=84 Identities=8% Similarity=0.009 Sum_probs=48.5
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037477 248 KALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVE-EMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEF 326 (639)
Q Consensus 248 ~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~ 326 (639)
-|.+.++.+.++.|---+..-...-...+-..|.+++|++++. ..-+.-...+...-+.-+..+...++|.+..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 3556666666555522233333333444556677888888773 333333333455555666777777777777777777
Q ss_pred hhcCC
Q 037477 327 MMDGP 331 (639)
Q Consensus 327 m~~~g 331 (639)
+...|
T Consensus 252 Ll~k~ 256 (932)
T KOG2053|consen 252 LLEKG 256 (932)
T ss_pred HHHhC
Confidence 76654
No 118
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.06 E-value=5.8e-06 Score=50.45 Aligned_cols=33 Identities=30% Similarity=0.453 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC
Q 037477 267 ITYNGILRVLARHESVRDFWNVVEEMKKEGYEM 299 (639)
Q Consensus 267 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 299 (639)
.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 466666666666666666666666666666655
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.06 E-value=0.00027 Score=63.80 Aligned_cols=117 Identities=13% Similarity=0.154 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHcCCC--hhHHH
Q 037477 422 GRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLING-FLSQKR--VNGAY 498 (639)
Q Consensus 422 g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~--~~~A~ 498 (639)
++.+++...++...+... .|...|..+...|...|++++|...+++..+.. +-+...+..+..+ +...|+ .++|.
T Consensus 53 ~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 333444444444333322 144444444444444444444444444444432 1233333333333 233333 24444
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 499 KLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 499 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
+++++..+...- +...+..+...+.+.|++++|+..|+++.+
T Consensus 131 ~~l~~al~~dP~--~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 131 EMIDKALALDAN--EVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHhCCC--ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444444433111 223344444444444444444444444443
No 120
>PLN02789 farnesyltranstransferase
Probab=98.06 E-value=0.0074 Score=58.77 Aligned_cols=224 Identities=8% Similarity=0.018 Sum_probs=156.6
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037477 376 YDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAG-RFEDACNVLDEMEENGCIPDIKTWTILIQGHC 454 (639)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~ 454 (639)
+..+-..+...++.++|+.+..++.+.. +-+..+|+..-..+...| ++++++..++++.+...+ +..+|+.-...+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~ 117 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHH
Confidence 3344455667889999999999998764 334556766666666777 689999999999987654 5667876655566
Q ss_pred HcCCH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CC
Q 037477 455 AANEV--DRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGA---RR 529 (639)
Q Consensus 455 ~~g~~--~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---g~ 529 (639)
+.|.. ++++.+++++++.. +-|..+|+...-.+.+.|+++++++.++++.+. +. -|...|+...-.+.+. |.
T Consensus 118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d~-~N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-DV-RNNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-CC-CchhHHHHHHHHHHhcccccc
Confidence 66653 67889999999876 447888888888888999999999999999886 22 2344555544444443 22
Q ss_pred H----HHHHHHHHHHHhCCCCCChH-hH---HHHHhh----cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC---
Q 037477 530 L----EEAMNLLRLMKKQNYPPFPE-PF---VQYISK----FGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEG--- 594 (639)
Q Consensus 530 ~----~~A~~~~~~m~~~~~~p~~~-~~---~~ll~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--- 594 (639)
. ++.++...++... .|+.. .| ..++.. .++..+|.+.+.+.....+.+......|++.|+...
T Consensus 195 ~~~~~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~ 272 (320)
T PLN02789 195 LEAMRDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPT 272 (320)
T ss_pred ccccHHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccc
Confidence 2 4567777666653 34432 22 333333 244567888888887777888999999999998643
Q ss_pred ---------------CHHHHHHHHhhC
Q 037477 595 ---------------RHYEAKDLLYKC 606 (639)
Q Consensus 595 ---------------~~~~A~~~~~~m 606 (639)
..++|.+++..+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 273 AEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred hhhhhhhhccccccccHHHHHHHHHHH
Confidence 235677777776
No 121
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=0.0052 Score=55.64 Aligned_cols=258 Identities=18% Similarity=0.140 Sum_probs=151.2
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 037477 264 HNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLL 343 (639)
Q Consensus 264 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll 343 (639)
|+..-|| ++-+--.|.+..++..-....... -+...-.-+-++|...|.+..... +..... .|.......+
T Consensus 8 ~~d~LF~--iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~- 78 (299)
T KOG3081|consen 8 PEDELFN--IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLL- 78 (299)
T ss_pred cchhHHH--HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHH-
Confidence 3334444 344455677777766655544331 244444445566666776554332 222211 2222222221
Q ss_pred HHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 037477 344 RSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGR 423 (639)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 423 (639)
..+.............+.+.+.......+......-...|+..|++++|++..+... +......=+..+.+..+
T Consensus 79 a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r 152 (299)
T KOG3081|consen 79 AEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHR 152 (299)
T ss_pred HHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHH
Confidence 222222221223344444444444444443444444567888899999998887622 22233333455667888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 037477 424 FEDACNVLDEMEENGCIPDIKTWTILIQGHCA----ANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYK 499 (639)
Q Consensus 424 ~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 499 (639)
++-|...+++|.+- -+..|.+.|.+++.+ .+.+.+|.-+|++|-+. ..|+..+.+....++...|++++|..
T Consensus 153 ~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~ 228 (299)
T KOG3081|consen 153 FDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAES 228 (299)
T ss_pred HHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHH
Confidence 89999999999874 356777777777665 34678888899888764 57888888888888889999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHh
Q 037477 500 LLVEMIEKVRLRPWQATFKTLIEKLLGARRLEE-AMNLLRLMKK 542 (639)
Q Consensus 500 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~ 542 (639)
++++...+..-. ..+...+|-.-...|...+ ..+.+.....
T Consensus 229 lL~eaL~kd~~d--petL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 229 LLEEALDKDAKD--PETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHhccCCC--HHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 999888764333 3355555554445555433 3345555544
No 122
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.03 E-value=0.00029 Score=69.79 Aligned_cols=136 Identities=21% Similarity=0.160 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhH----HH
Q 037477 479 DLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPF----VQ 554 (639)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~----~~ 554 (639)
.....|+..+...++++.|..+|+++.+. .|+ ....+++.+...++-.+|.+++++..+. .|....+ ..
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~ 242 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAE 242 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 34456667777788899999999998876 365 4455777777888888999998888853 2433222 23
Q ss_pred HHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCccccCChhHHHhhh
Q 037477 555 YISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHHIRQDSKISLLFG 621 (639)
Q Consensus 555 ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~~ 621 (639)
++.+.++.+.|..+.+++.+..|.+..+|..|+.+|.+.|++++|+-.++.||-...++........
T Consensus 243 fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~k~~~~~~~ 309 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTYKDKYKLKRPV 309 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCccchhhhcCC
Confidence 3457799999999999999999999999999999999999999999999999877666554444443
No 123
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.02 E-value=0.019 Score=56.78 Aligned_cols=140 Identities=19% Similarity=0.133 Sum_probs=116.1
Q ss_pred HHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCH
Q 037477 381 RALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPD-IKTWTILIQGHCAANEV 459 (639)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~li~~~~~~g~~ 459 (639)
-.+...|++++|++.+..+.... +-|+.-+....+.+.+.|+.++|.+.++.+.... |+ ...+-.+.++|.+.|++
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCCh
Confidence 34567899999999999988773 3455556667789999999999999999999864 55 56777788999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037477 460 DRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRL 539 (639)
Q Consensus 460 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 539 (639)
.+|..+++...... +-|...|..|-.+|...|+..++..-.-+ +|.-.|++++|...+..
T Consensus 391 ~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE-------------------~~~~~G~~~~A~~~l~~ 450 (484)
T COG4783 391 QEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE-------------------GYALAGRLEQAIIFLMR 450 (484)
T ss_pred HHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH-------------------HHHhCCCHHHHHHHHHH
Confidence 99999999988875 66889999999999999998887765544 35667999999999988
Q ss_pred HHhC
Q 037477 540 MKKQ 543 (639)
Q Consensus 540 m~~~ 543 (639)
..+.
T Consensus 451 A~~~ 454 (484)
T COG4783 451 ASQQ 454 (484)
T ss_pred HHHh
Confidence 8764
No 124
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.01 E-value=0.00075 Score=60.91 Aligned_cols=112 Identities=13% Similarity=0.073 Sum_probs=55.6
Q ss_pred CCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhH----HHH-HhhcCC--HH
Q 037477 491 QKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPF----VQY-ISKFGT--VE 563 (639)
Q Consensus 491 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~----~~l-l~~~g~--~~ 563 (639)
.++.+++...++...+. -..+...|..+...|...|++++|...+++..+. .|+.... ... +...|+ .+
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcH
Confidence 34444444444444432 1223445555555555555555555555555542 2322211 111 123343 35
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 564 DASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 564 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
+|.+++++..+..|.+..++..+...+.+.|++++|+..|+++
T Consensus 128 ~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 128 QTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5666666665555555666666666666666666666666654
No 125
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.016 Score=57.86 Aligned_cols=84 Identities=13% Similarity=0.052 Sum_probs=53.9
Q ss_pred ccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 037477 243 RIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMD-IDTYIKISRQFQKFRMMEDAV 321 (639)
Q Consensus 243 ~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~ 321 (639)
.++.+.|+..|-....-. ++|.+.|..=..+|+..|++++|++=-.+-.+. .|+ ...|.-...++.-.|++++|+
T Consensus 15 ~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred cccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHHH
Confidence 366677777776653221 336677777777777777777776544444433 455 345777777777777777777
Q ss_pred HHHHHhhcC
Q 037477 322 KLFEFMMDG 330 (639)
Q Consensus 322 ~l~~~m~~~ 330 (639)
.-|.+-++.
T Consensus 91 ~ay~~GL~~ 99 (539)
T KOG0548|consen 91 LAYSEGLEK 99 (539)
T ss_pred HHHHHHhhc
Confidence 777765543
No 126
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.98 E-value=0.016 Score=54.49 Aligned_cols=313 Identities=13% Similarity=0.019 Sum_probs=192.8
Q ss_pred ccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHH
Q 037477 243 RIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYI-KISRQFQKFRMMEDAV 321 (639)
Q Consensus 243 ~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~a~ 321 (639)
+++...|+..|+...+ |-+-+-.++-.-...|...|+-..|+.=+....+. +||-..-. --...+.+.|.++.|.
T Consensus 51 ~~Q~sDALt~yHaAve--~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Gele~A~ 126 (504)
T KOG0624|consen 51 RGQLSDALTHYHAAVE--GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGELEQAE 126 (504)
T ss_pred hhhHHHHHHHHHHHHc--CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcccHHHHH
Confidence 4667778888887742 21222233334456788889888888888888876 66654322 1234567899999999
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 037477 322 KLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKN 401 (639)
Q Consensus 322 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 401 (639)
.=|+...+.. |+..+- ..+..+. ..+.+. ......+..+...|+...|+.....+.+
T Consensus 127 ~DF~~vl~~~--~s~~~~---~eaqskl-----~~~~e~-------------~~l~~ql~s~~~~GD~~~ai~~i~~llE 183 (504)
T KOG0624|consen 127 ADFDQVLQHE--PSNGLV---LEAQSKL-----ALIQEH-------------WVLVQQLKSASGSGDCQNAIEMITHLLE 183 (504)
T ss_pred HHHHHHHhcC--CCcchh---HHHHHHH-----HhHHHH-------------HHHHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 9999998763 322111 1111110 000011 1123355566778999999999998887
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 037477 402 AGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLL 481 (639)
Q Consensus 402 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 481 (639)
.. +-|...|..-..+|...|++..|+.=++...+..-. +..++--+-..+-..|+.+.++...++.++. .||....
T Consensus 184 i~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~C 259 (504)
T KOG0624|consen 184 IQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLC 259 (504)
T ss_pred cC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhH
Confidence 64 557777888888999999999998877776654433 5556666677778889988888888877765 4554322
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHH--HHHh--
Q 037477 482 DVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFV--QYIS-- 557 (639)
Q Consensus 482 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~--~ll~-- 557 (639)
- ..-..+.+..+.++.|.+ ....++|.++++-.+...+........+++ .++|
T Consensus 260 f------~~YKklkKv~K~les~e~-----------------~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C 316 (504)
T KOG0624|consen 260 F------PFYKKLKKVVKSLESAEQ-----------------AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTC 316 (504)
T ss_pred H------HHHHHHHHHHHHHHHHHH-----------------HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeec
Confidence 1 111122223333333322 233455666666666555533221122221 2223
Q ss_pred --hcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCcc
Q 037477 558 --KFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHH 609 (639)
Q Consensus 558 --~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 609 (639)
..|++.+|++...++.+..|.+..++.--..+|.-...+++|+.-|++..+.
T Consensus 317 ~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 317 YREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred ccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 3477777888778877777777888877788887777888887777775443
No 127
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=0.026 Score=56.44 Aligned_cols=240 Identities=13% Similarity=0.095 Sum_probs=136.1
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhc
Q 037477 270 NGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSI 349 (639)
Q Consensus 270 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~ 349 (639)
..+.++.-+..+++.|.+-++...+.. -+..-++....+|...|.+.++...-+...+.|.. ....|+.+-.+
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~---- 300 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKA---- 300 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHH----
Confidence 345555556666777777776666553 34444556666677777766666655554433211 11111111111
Q ss_pred CCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 037477 350 NNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACN 429 (639)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 429 (639)
+..+-.+|.+.++++.|...|.+.......|+. ..+....+++..
T Consensus 301 --------------------------~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k 345 (539)
T KOG0548|consen 301 --------------------------LARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALK 345 (539)
T ss_pred --------------------------HHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHH
Confidence 122344667778888888888886654333332 123334445554
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhC
Q 037477 430 VLDEMEENGCIPDI-KTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKV 508 (639)
Q Consensus 430 ~~~~m~~~~~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 508 (639)
..+...-.+ |.. .-...-...+.+.|++..|...|.++++.. +-|...|..-.-+|.+.|.+..|++--+...+.
T Consensus 346 ~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL- 421 (539)
T KOG0548|consen 346 EAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL- 421 (539)
T ss_pred HHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-
Confidence 444433322 222 111222556677888888888888888876 556777888888888888888888776665543
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHhhc
Q 037477 509 RLRPW-QATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYISKF 559 (639)
Q Consensus 509 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 559 (639)
.|+ ...|..=..++....++++|++.|.+..+. .|+..-+...+.+|
T Consensus 422 --~p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e~~~~~~rc 469 (539)
T KOG0548|consen 422 --DPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAEAIDGYRRC 469 (539)
T ss_pred --CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHH
Confidence 333 223333333444455677777777777763 36655555555433
No 128
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.95 E-value=0.0061 Score=66.51 Aligned_cols=148 Identities=10% Similarity=0.058 Sum_probs=97.2
Q ss_pred CChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHH-HHHhcCchhhHHHHHHHHHHHhhhccchhHHHH
Q 037477 127 PSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILG-VLKKAKKASDLAALNQFHDGMVKEIAMDNVAKT 205 (639)
Q Consensus 127 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (639)
.+...|..||..+...+++++|.++.++-.+. .|+...+-.... .+.+.++..++..+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv------------------- 87 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL------------------- 87 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-------------------
Confidence 45678999999999999999999999966554 355443332222 34444443333221
Q ss_pred HHHHHhcCCchHHHHHHHhhccCcCCHHHHHHHHHHhccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHH
Q 037477 206 LVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDF 285 (639)
Q Consensus 206 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 285 (639)
..++.......| .+.+.+....-+ +.-+..++-.+..+|-+.|+.++|
T Consensus 88 ---------------~~l~~~~~~~~~---------------~~ve~~~~~i~~--~~~~k~Al~~LA~~Ydk~g~~~ka 135 (906)
T PRK14720 88 ---------------NLIDSFSQNLKW---------------AIVEHICDKILL--YGENKLALRTLAEAYAKLNENKKL 135 (906)
T ss_pred ---------------hhhhhcccccch---------------hHHHHHHHHHHh--hhhhhHHHHHHHHHHHHcCChHHH
Confidence 111111111112 222222211111 233556788899999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 037477 286 WNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMD 329 (639)
Q Consensus 286 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 329 (639)
..+++++.+.. +-|+...|.+...|+.. ++++|++++.....
T Consensus 136 ~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 136 KGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred HHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 99999999987 56888999999999999 99999999887754
No 129
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.94 E-value=0.0043 Score=66.81 Aligned_cols=132 Identities=12% Similarity=0.132 Sum_probs=81.8
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037477 372 SKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPD-NITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILI 450 (639)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li 450 (639)
+...+-.+.....+.|..++|+.+++...+. .|| ......+...+.+.+++++|....++....... +......+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHH
Confidence 3555666666666667777777777666655 343 334455566666677777777776666665432 444555566
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 037477 451 QGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 451 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (639)
.++.+.|++++|..+|++....+ .-+..++..+-.++-..|+.++|...|+...+.
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666677777777777766632 233556666666666667777777777666653
No 130
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.93 E-value=0.0011 Score=56.42 Aligned_cols=95 Identities=7% Similarity=-0.043 Sum_probs=65.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 037477 411 YSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLS 490 (639)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (639)
+..+...+...|++++|...|+........ +...|..+..++...|++++|...|++..+.+ +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 444556666777777777777777665432 56667777777777777777777777777654 3466666677777777
Q ss_pred CCChhHHHHHHHHHHHh
Q 037477 491 QKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 491 ~g~~~~A~~~~~~m~~~ 507 (639)
.|++++|...|+...+.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777776653
No 131
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.90 E-value=0.0034 Score=56.79 Aligned_cols=156 Identities=16% Similarity=0.114 Sum_probs=90.4
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 037477 379 IHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANE 458 (639)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~ 458 (639)
+-..+...|+-+....+........ +.|....+..+....+.|++..|...|++..... .+|...|+.+.-+|.+.|+
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccC
Confidence 4445555566665555555543221 3344445556666666777777777776666543 2466667777777777777
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037477 459 VDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLR 538 (639)
Q Consensus 459 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 538 (639)
.+.|..-|.+..+.. .-+...+|.|.-.|.-.|+.+.|..++...... -.-|...-..+.......|++++|..+..
T Consensus 150 ~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 150 FDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred hhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 777777666666643 123344555555556666777777766665543 12244455555555666667666666554
Q ss_pred H
Q 037477 539 L 539 (639)
Q Consensus 539 ~ 539 (639)
.
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 3
No 132
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.90 E-value=0.0021 Score=69.13 Aligned_cols=212 Identities=12% Similarity=0.059 Sum_probs=140.8
Q ss_pred ChhhHHHHHHHHHccCChhHHH-HHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037477 372 SKSVYDGIHRALTKLGRFDEAE-KMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILI 450 (639)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li 450 (639)
++...+.+=.+.+..|..++|- +++.+.. .++..........+++.-....... ...+...+-.|.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~La 93 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQAR------------QVLERHAAVHKPAAALPELLDYVRR-YPHTELFQVLVA 93 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHH------------HHHHHhhhhcchHhhHHHHHHHHHh-ccccHHHHHHHH
Confidence 3344444445666667766663 3433332 2333333333333333333333332 234678888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 037477 451 QGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW-QATFKTLIEKLLGARR 529 (639)
Q Consensus 451 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~ 529 (639)
......|..++|..+++...+.. +-+......+...+.+.+++++|+..+++.... .|+ ......+..++.+.|+
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~~~~~a~~l~~~g~ 169 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSAREILLEAKSWDEIGQ 169 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999998863 334566677788899999999999999988764 454 4456667778889999
Q ss_pred HHHHHHHHHHHHhCCCC-CC-hHhHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 530 LEEAMNLLRLMKKQNYP-PF-PEPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 530 ~~~A~~~~~~m~~~~~~-p~-~~~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
+++|.++|++....+.. ++ ...+...+...|+.++|...|++..+...+....|+.++ ++...-..++++.
T Consensus 170 ~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 242 (694)
T PRK15179 170 SEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VDLNADLAALRRL 242 (694)
T ss_pred hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HHHHHHHHHHHHc
Confidence 99999999999873321 11 224556667889999999999999888666666655443 3334455666665
No 133
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.89 E-value=0.00073 Score=57.56 Aligned_cols=96 Identities=9% Similarity=-0.149 Sum_probs=85.1
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 037477 376 YDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCA 455 (639)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~ 455 (639)
+......+...|++++|...|+...... +.+...|..+..++.+.|++++|...|++...... .+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHH
Confidence 4456778889999999999999998875 55788899999999999999999999999998754 377889999999999
Q ss_pred cCCHHHHHHHHHHHHHcC
Q 037477 456 ANEVDRALLCFAKMMEKN 473 (639)
Q Consensus 456 ~g~~~~a~~~~~~m~~~g 473 (639)
.|+.++|...|+..++..
T Consensus 105 ~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMS 122 (144)
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 999999999999998864
No 134
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.88 E-value=0.0042 Score=56.20 Aligned_cols=157 Identities=15% Similarity=0.061 Sum_probs=98.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 037477 412 SQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQ 491 (639)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 491 (639)
.-+-..+...|+-+....+......... .|.......+....+.|++..|...+.+..... ++|..+|+.+--+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 4444556666776766666665443322 245555567777777788888887777777654 66777777777777788
Q ss_pred CChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHh--HHHHHhhcCCHHHHHHHH
Q 037477 492 KRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEP--FVQYISKFGTVEDASEFL 569 (639)
Q Consensus 492 g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~ll~~~g~~~~a~~~~ 569 (639)
|+.++|..-|.+..+-.+-.|. .++.|.-.+.-.|+++.|..++......+......- +.-+....|++++|+.+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~--~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPS--IANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccCCch--hhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 8888887777777665333333 556666666667777777777777765443222221 122235667777777665
Q ss_pred HHh
Q 037477 570 KAL 572 (639)
Q Consensus 570 ~~~ 572 (639)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 433
No 135
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.87 E-value=0.063 Score=57.79 Aligned_cols=474 Identities=9% Similarity=-0.007 Sum_probs=229.3
Q ss_pred CCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHhcCchhhH
Q 037477 106 DNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGV--LKKAKKASDL 183 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~--~~~~~~~~~~ 183 (639)
.++...|..-|+...+.. +.|..+|..+..+|...|++..|.++|.+..... |+ .+|.....+ -+..|.+.++
T Consensus 575 a~n~h~aV~~fQsALR~d--PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~-s~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 575 AHNLHGAVCEFQSALRTD--PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PL-SKYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred ccchhhHHHHHHHHhcCC--chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cH-hHHHHHHHHHHHHHhhhHHHH
Confidence 467888999998887622 2477899999999999999999999998877643 43 344443333 2334555555
Q ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHhc-------CCc----hHHHHHHHhhccCcC----CHHHHHHHHHHhccChHH
Q 037477 184 AALNQFHDGMVKEIAMDNVAKTLVDVVLG-------SDW----DDKIGKKLEDMKIEL----SDNFVLTVLKELRIYPVK 248 (639)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~----~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~ 248 (639)
....+..-..... ...+...+...+.+ .|. .+.+++.++...+.. ..+..... -...
T Consensus 650 ld~l~~ii~~~s~--e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi------~asd 721 (1238)
T KOG1127|consen 650 LDALGLIIYAFSL--ERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWI------VASD 721 (1238)
T ss_pred HHHHHHHHHHHHH--HHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHH------HHhH
Confidence 4333322222211 11111111111111 111 111111111111000 00000000 0124
Q ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCCh---h---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cC---
Q 037477 249 ALGFFRWVGEHSGYKHNTITYNGILRVLARHESV---R---DFWNVVEEMKKEGYEMDIDTYIKISRQFQK----FR--- 315 (639)
Q Consensus 249 A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~---~---~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g--- 315 (639)
|..+|-+.. .. .|+.....++..-.-+.+.. | -+.+.+-.-. ....+..+|..++..|.+ .|
T Consensus 722 ac~~f~q~e--~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl--sl~~~~~~WyNLGinylr~f~~l~et~ 796 (1238)
T KOG1127|consen 722 ACYIFSQEE--PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL--SLAIHMYPWYNLGINYLRYFLLLGETM 796 (1238)
T ss_pred HHHHHHHhc--cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH--HHhhccchHHHHhHHHHHHHHHcCCcc
Confidence 666777662 22 33333333333222223322 1 0111111111 112235555555544433 11
Q ss_pred -CHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCC-CCChhhHHHHHHHHHccCChhHHH
Q 037477 316 -MMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGN-SLSKSVYDGIHRALTKLGRFDEAE 393 (639)
Q Consensus 316 -~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~ 393 (639)
+...|+..+....+. ..+...+-..+...+ +.++...+... .+...-. +....+|..+--.+.+..+++.|.
T Consensus 797 ~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVls--g~gnva~aQHC--fIks~~sep~~~~~W~NlgvL~l~n~d~E~A~ 870 (1238)
T KOG1127|consen 797 KDACTAIRCCKKAVSL--CANNEGLWNALGVLS--GIGNVACAQHC--FIKSRFSEPTCHCQWLNLGVLVLENQDFEHAE 870 (1238)
T ss_pred hhHHHHHHHHHHHHHH--hhccHHHHHHHHHhh--ccchhhhhhhh--hhhhhhccccchhheeccceeEEecccHHHhh
Confidence 223555555555432 223333333333332 22222222221 1222222 223456666767778888999999
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 037477 394 KMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEME----ENGCIPDIKTWTILIQGHCAANEVDRALLCFAKM 469 (639)
Q Consensus 394 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 469 (639)
..|...+... +.+...|--....-...|+.-++..+|..-- ..|-.|+..-|-....-...+|+.++-....+.+
T Consensus 871 ~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki 949 (1238)
T KOG1127|consen 871 PAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKI 949 (1238)
T ss_pred HHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhh
Confidence 9999887663 3345556544444456777777777776621 2333455555555555556666655544333332
Q ss_pred HH---------cCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHhcCCHHHHHHH
Q 037477 470 ME---------KNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLI----EKLLGARRLEEAMNL 536 (639)
Q Consensus 470 ~~---------~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li----~~~~~~g~~~~A~~~ 536 (639)
-. .|.+-+...|.+.....-+.+.+.+|..+..+...--..+-+...|+.+. +.++..|.++.|..-
T Consensus 950 ~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a 1029 (1238)
T KOG1127|consen 950 SSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKA 1029 (1238)
T ss_pred hhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhh
Confidence 21 23344556676666666667777776666655432211233445566433 233445666655443
Q ss_pred HHHHHhCCCCCChHhHHHHH--hhcCCHHHHHHHHHHhhcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037477 537 LRLMKKQNYPPFPEPFVQYI--SKFGTVEDASEFLKALSVK---EYPSSAAYLQVFESFFNEGRHYEAKDLLYKCP 607 (639)
Q Consensus 537 ~~~m~~~~~~p~~~~~~~ll--~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 607 (639)
+..... ..+......-+ --.|+++++.+.|++.... ...-......++.....+|.-+.|..++-++.
T Consensus 1030 ~~~~~~---evdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~ 1102 (1238)
T KOG1127|consen 1030 SWKEWM---EVDEDIRGTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVK 1102 (1238)
T ss_pred hcccch---hHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHH
Confidence 332211 11111111111 2357788888888877765 22223445555566666777777777766653
No 136
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.86 E-value=1.7e-05 Score=47.08 Aligned_cols=31 Identities=10% Similarity=0.238 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHhcCC
Q 037477 130 TVYSLMLRNLVNKDSLKQFWVTLRRMKEDHC 160 (639)
Q Consensus 130 ~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~ 160 (639)
++||.||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999999885
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.83 E-value=0.0011 Score=55.92 Aligned_cols=95 Identities=17% Similarity=0.177 Sum_probs=53.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 037477 411 YSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLS 490 (639)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (639)
...+...+...|++++|...|+.....+. .+...|..+...+...|++++|..+++...+.+ +.+...+..+...|..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 44445555566666666666666555432 244555556666666666666666666655543 3344455555556666
Q ss_pred CCChhHHHHHHHHHHHh
Q 037477 491 QKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 491 ~g~~~~A~~~~~~m~~~ 507 (639)
.|++++|...|+...+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 98 LGEPESALKALDLAIEI 114 (135)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666655543
No 138
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.83 E-value=0.00033 Score=69.73 Aligned_cols=120 Identities=13% Similarity=0.094 Sum_probs=67.7
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHC--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 037477 372 SKSVYDGIHRALTKLGRFDEAEKMMKAMKNA--GFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTIL 449 (639)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 449 (639)
+......+++.+....+++++..++...... ....-..|..++|+.|.+.|..++++.++..=...|+-||..|+|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4444555555555555566666666555543 11111223346666666666666666666666666666666666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 037477 450 IQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQ 491 (639)
Q Consensus 450 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 491 (639)
|+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 666666666666666666666555555555555444444443
No 139
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.83 E-value=0.066 Score=56.98 Aligned_cols=172 Identities=10% Similarity=0.036 Sum_probs=95.1
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 037477 265 NTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLR 344 (639)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~ 344 (639)
|..|..++-.+|.+.|+.++|..+|+..... -|+......+..+|.+.+++.+-.+.--+|.+ ...-+...+=.+++
T Consensus 76 D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~S 152 (932)
T KOG2053|consen 76 DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVIS 152 (932)
T ss_pred chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHH
Confidence 5666666666677777777777777766654 45555556666666666655443332222222 11223333333333
Q ss_pred HHhhcCCCc--------hhHHHHHHHHHHhcC-CCCChhhHHHHHHHHHccCChhHHHHHH-HHHHHCCCCCCHHhHHHH
Q 037477 345 SISSINNPD--------LGLVFRVANKYESLG-NSLSKSVYDGIHRALTKLGRFDEAEKMM-KAMKNAGFEPDNITYSQV 414 (639)
Q Consensus 345 ~~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~g~~~~~~~~~~l 414 (639)
.+....... ...+.+..+.+.+.+ .-.+..=.......+...|++++|.+++ ....+.-...+...-+--
T Consensus 153 lilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~ 232 (932)
T KOG2053|consen 153 LILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKK 232 (932)
T ss_pred HHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 333222110 223444444444433 2222222222344556778899999888 444444334444555667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC
Q 037477 415 IFGLCKAGRFEDACNVLDEMEENGC 439 (639)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~~~ 439 (639)
++.+...+++.+..++-.++...|.
T Consensus 233 ~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 233 LDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHHHHhcChHHHHHHHHHHHHhCC
Confidence 7888889999999998888888763
No 140
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.83 E-value=0.013 Score=59.06 Aligned_cols=257 Identities=11% Similarity=0.077 Sum_probs=135.3
Q ss_pred ccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037477 243 RIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVK 322 (639)
Q Consensus 243 ~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 322 (639)
.|+..+|.-.|+...++. +-+...|--|-..-...++-..|+..+.+..+.. +-+....-+|.-.|...|.-..|++
T Consensus 298 nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred cCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHHH
Confidence 466778888888775432 3377888888888888888888888888888774 4467777888888888888888888
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHH-H
Q 037477 323 LFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMK-N 401 (639)
Q Consensus 323 l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~ 401 (639)
.++.......+ - ..+..+ ...+... ..+..++. ..+....++|-++. .
T Consensus 375 ~L~~Wi~~~p~--y---~~l~~a-~~~~~~~------------~~~s~~~~-------------~~l~~i~~~fLeaa~~ 423 (579)
T KOG1125|consen 375 MLDKWIRNKPK--Y---VHLVSA-GENEDFE------------NTKSFLDS-------------SHLAHIQELFLEAARQ 423 (579)
T ss_pred HHHHHHHhCcc--c---hhcccc-Ccccccc------------CCcCCCCH-------------HHHHHHHHHHHHHHHh
Confidence 88877543210 0 000000 0000000 00000111 11122233333332 2
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 037477 402 AGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLL 481 (639)
Q Consensus 402 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 481 (639)
.+..+|+.....|--.|--.|++++|...|+........ |...||.|...++...+.++|+..|.+.++....--.+-|
T Consensus 424 ~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~Ry 502 (579)
T KOG1125|consen 424 LPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRY 502 (579)
T ss_pred CCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeeh
Confidence 332345555555555555566666666666665554322 4455666666666666666666666666554211111223
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHh--------CCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037477 482 DVLINGFLSQKRVNGAYKLLVEMIEK--------VRLRPWQATFKTLIEKLLGARRLEEAMN 535 (639)
Q Consensus 482 ~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~~p~~~~~~~li~~~~~~g~~~~A~~ 535 (639)
| |.-+|...|.+++|.+.|-+...- ....++...|..|=.++.-.++.+-+.+
T Consensus 503 N-lgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 503 N-LGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred h-hhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 2 223455556666665555443221 0112233455555455555555543333
No 141
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.82 E-value=0.00028 Score=70.19 Aligned_cols=124 Identities=12% Similarity=0.066 Sum_probs=105.6
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 037477 403 GFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEEN--GCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADL 480 (639)
Q Consensus 403 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 480 (639)
+.+.+......+++.+....+++.+..++.+.+.. ....-..|..++|+.|.+.|..+.++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44667788888999999999999999999998865 2222345667999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 037477 481 LDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGA 527 (639)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 527 (639)
+|.||+.+.+.|++..|.++..+|... +...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHh
Confidence 999999999999999999999999887 5556667777777777665
No 142
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.82 E-value=2.1e-05 Score=46.73 Aligned_cols=29 Identities=24% Similarity=0.507 Sum_probs=20.6
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHCC
Q 037477 268 TYNGILRVLARHESVRDFWNVVEEMKKEG 296 (639)
Q Consensus 268 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g 296 (639)
+||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56777777777777777777777777665
No 143
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=0.0025 Score=57.16 Aligned_cols=183 Identities=14% Similarity=0.105 Sum_probs=120.7
Q ss_pred hcCCHHHHHHHHHHHHH---CC-CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHcCCC
Q 037477 420 KAGRFEDACNVLDEMEE---NG-CIPDIKT-WTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLIN-GFLSQKR 493 (639)
Q Consensus 420 ~~g~~~~A~~~~~~m~~---~~-~~p~~~t-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~-~~~~~g~ 493 (639)
...+.++..+++.++.. .| ..++..+ |..++-+....|+.+.|..+++++...- |...-...|=. -+-..|.
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhc
Confidence 35677888888888763 34 4455543 4455666677888888888888887753 33222111111 2345678
Q ss_pred hhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHH---HHhhcCCHHHHHHHHH
Q 037477 494 VNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQ---YISKFGTVEDASEFLK 570 (639)
Q Consensus 494 ~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~---ll~~~g~~~~a~~~~~ 570 (639)
+++|.++++.+.+.. +.|..+|-.=+...-..|+--+|++-+....+. +..|...|.. ++...|+++.|.-.++
T Consensus 102 ~~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred hhhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 888888888888762 335566665555555667767777776666653 5556666543 4467788888888888
Q ss_pred HhhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHhhCC
Q 037477 571 ALSVKEYPSSAAYLQVFESFFNEG---RHYEAKDLLYKCP 607 (639)
Q Consensus 571 ~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~ 607 (639)
++.-..|.++-.+..+.+.+.-.| +.+-|.+++.+-.
T Consensus 179 E~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 179 ELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 888778888888888888776655 4555777777753
No 144
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.79 E-value=0.00083 Score=66.65 Aligned_cols=126 Identities=14% Similarity=0.120 Sum_probs=87.8
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037477 374 SVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGH 453 (639)
Q Consensus 374 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~ 453 (639)
.....++..+...++++.|.++|+++.+.. |+ ....+...+...++-.+|.+++++..+.... +......-...|
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 344556666677778888888888887663 44 3445667777777777888888777754322 555666666667
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 037477 454 CAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMI 505 (639)
Q Consensus 454 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 505 (639)
.+.++.+.|+.+.+++.+.. +-+-.+|..|..+|.+.|+++.|+..++.++
T Consensus 245 l~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77888888888888877763 3344577778888888888888887777664
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.75 E-value=0.0016 Score=55.59 Aligned_cols=124 Identities=15% Similarity=0.107 Sum_probs=79.0
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHh-----HH
Q 037477 480 LLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRP-WQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEP-----FV 553 (639)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-----~~ 553 (639)
.|..++..+ ..++...+...++.+.+.++-.| .....-.+...+...|++++|...|+........|.... +.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344455444 36777777777777777633221 122333445667778888888888888877552232221 12
Q ss_pred HHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 037477 554 QYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYK 605 (639)
Q Consensus 554 ~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 605 (639)
.++...|++++|...++.... .+..+..+....++|.+.|++++|...|++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~-~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPD-EAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccC-cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 233567888888888866432 344566777888888999999999888875
No 146
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.75 E-value=0.00077 Score=52.35 Aligned_cols=77 Identities=8% Similarity=0.296 Sum_probs=43.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHcCCCCCHHHHHH
Q 037477 413 QVIFGLCKAGRFEDACNVLDEMEENGC-IPDIKTWTILIQGHCAANE--------VDRALLCFAKMMEKNYDADADLLDV 483 (639)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~t~~~li~~~~~~g~--------~~~a~~~~~~m~~~g~~~~~~~~~~ 483 (639)
..|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..- +-..+.+++.|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 334444455666666666666666666 5666666666666554321 2234555566666666666666666
Q ss_pred HHHHHH
Q 037477 484 LINGFL 489 (639)
Q Consensus 484 li~~~~ 489 (639)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 655544
No 147
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.70 E-value=0.0018 Score=54.65 Aligned_cols=118 Identities=14% Similarity=0.004 Sum_probs=83.5
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCC
Q 037477 430 VLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVR 509 (639)
Q Consensus 430 ~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 509 (639)
.|++....... +......+...+...|++++|.+.++.....+ +.+...+..+...+.+.|++++|..+++...+..
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 34444443221 33455667777888899999999998888765 4467778888888888899999999888876642
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHH
Q 037477 510 LRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFV 553 (639)
Q Consensus 510 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 553 (639)
..+...+..+...|...|++++|...++...+. .|+...+.
T Consensus 82 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 122 (135)
T TIGR02552 82 -PDDPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPEYS 122 (135)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccchHH
Confidence 334556666777888889999999988888773 35554443
No 148
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=0.023 Score=51.18 Aligned_cols=184 Identities=18% Similarity=0.185 Sum_probs=117.9
Q ss_pred CChhHHHHHHHHHHH---CC-CCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHcCCHH
Q 037477 387 GRFDEAEKMMKAMKN---AG-FEPDNI-TYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTIL-IQGHCAANEVD 460 (639)
Q Consensus 387 g~~~~A~~~~~~m~~---~g-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l-i~~~~~~g~~~ 460 (639)
.+.++..+++.++.. .| ..++.. .|..++-+....|+.+.|...++++...= |...-...| ..-+-..|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchh
Confidence 455666666666543 23 334433 34455566667788888888888877653 332211111 12234567888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037477 461 RALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLM 540 (639)
Q Consensus 461 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 540 (639)
+|.++++.+++.+ +.|.+++-.=+...-..|+.-+|++-+.+..+. +..|...|.-+.+.|...|++++|.-.++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 8888888888776 556666766666666677777888777777765 3557778888888888888888888888887
Q ss_pred HhCCCCCChHhHHHHH-------hhcCCHHHHHHHHHHhhcCCC
Q 037477 541 KKQNYPPFPEPFVQYI-------SKFGTVEDASEFLKALSVKEY 577 (639)
Q Consensus 541 ~~~~~~p~~~~~~~ll-------~~~g~~~~a~~~~~~~~~~~~ 577 (639)
.- +.|....+..-+ +...+++.+.+++.+..+..+
T Consensus 181 ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 181 LL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 75 446554443332 233466777788877777644
No 149
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.64 E-value=0.0012 Score=51.31 Aligned_cols=81 Identities=10% Similarity=0.233 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHcCC--------ChhHHHHHHHHHHHhCCCCCCHH
Q 037477 445 TWTILIQGHCAANEVDRALLCFAKMMEKNY-DADADLLDVLINGFLSQK--------RVNGAYKLLVEMIEKVRLRPWQA 515 (639)
Q Consensus 445 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~~~~~p~~~ 515 (639)
|-...|..|...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-+.+.+|++|... +++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 334566677777999999999999999999 899999999999887654 345678889999887 8999999
Q ss_pred HHHHHHHHHHh
Q 037477 516 TFKTLIEKLLG 526 (639)
Q Consensus 516 ~~~~li~~~~~ 526 (639)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999987765
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.63 E-value=0.0038 Score=53.34 Aligned_cols=123 Identities=17% Similarity=0.178 Sum_probs=53.4
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHH
Q 037477 376 YDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDN---ITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDI--KTWTILI 450 (639)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~t~~~li 450 (639)
|..++..+ ..++...+...++.+.+.. +.+. ...-.+...+...|++++|...|+........|+. ...-.+.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33344433 2455555555555555442 1111 11112334455555555555555555554322211 1222344
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHH
Q 037477 451 QGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLV 502 (639)
Q Consensus 451 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 502 (639)
..+...|++++|+..++...... .....+...-+.|.+.|+.++|...|+
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44555555555555554422221 122233344445555555555555554
No 151
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.63 E-value=0.0018 Score=57.09 Aligned_cols=72 Identities=19% Similarity=0.260 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037477 422 GRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAA----------------NEVDRALLCFAKMMEKNYDADADLLDVLI 485 (639)
Q Consensus 422 g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~----------------g~~~~a~~~~~~m~~~g~~~~~~~~~~li 485 (639)
|.++=....+..|.+-|+.-|..+|+.|++.+=+. .+.+-|++++++|...|+-||..++..|+
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll 145 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLL 145 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 33444444444444444444444554444443321 12345666666666666666666666666
Q ss_pred HHHHcCCC
Q 037477 486 NGFLSQKR 493 (639)
Q Consensus 486 ~~~~~~g~ 493 (639)
+.+++.+.
T Consensus 146 ~iFG~~s~ 153 (228)
T PF06239_consen 146 NIFGRKSH 153 (228)
T ss_pred HHhccccH
Confidence 66665554
No 152
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.60 E-value=0.0092 Score=60.55 Aligned_cols=258 Identities=12% Similarity=0.137 Sum_probs=127.6
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHH
Q 037477 262 YKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSL 341 (639)
Q Consensus 262 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ 341 (639)
+.|-.+.+.+-+..|...|.+++|.++- +......-|.-+......+=+++-|.+.|.+....
T Consensus 552 i~~~evp~~~~m~q~Ieag~f~ea~~ia------clgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl----------- 614 (1081)
T KOG1538|consen 552 ISAVEVPQSAPMYQYIERGLFKEAYQIA------CLGVTDTDWRELAMEALEALDFETARKAYIRVRDL----------- 614 (1081)
T ss_pred eecccccccccchhhhhccchhhhhccc------ccceecchHHHHHHHHHhhhhhHHHHHHHHHHhcc-----------
Confidence 4555666677777888889988886542 11112223444444333444455555444444321
Q ss_pred HHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCC-CHHhHH-----HHH
Q 037477 342 LLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEP-DNITYS-----QVI 415 (639)
Q Consensus 342 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~-----~li 415 (639)
..-+...-++++.+.|..|+... +...++-.|++.+|-++|.+- |... -...|+ -..
T Consensus 615 -----------~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~---G~enRAlEmyTDlRMFD~a 677 (1081)
T KOG1538|consen 615 -----------RYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS---GHENRALEMYTDLRMFDYA 677 (1081)
T ss_pred -----------HHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc---CchhhHHHHHHHHHHHHHH
Confidence 22223333445555566565443 233455566666666666532 2110 000111 122
Q ss_pred HHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH------HHHHcCC---CCCHHHHHHH
Q 037477 416 FGLCKAGRFEDACNVLDEMEE--NGCIPDIKTWTILIQGHCAANEVDRALLCFA------KMMEKNY---DADADLLDVL 484 (639)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~--~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~------~m~~~g~---~~~~~~~~~l 484 (639)
.-|.+.|..++-..+.++-.+ .+++-. .+....+...|+.++|..+.. -+.+-+- ..+..+...+
T Consensus 678 QE~~~~g~~~eKKmL~RKRA~WAr~~keP----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~ 753 (1081)
T KOG1538|consen 678 QEFLGSGDPKEKKMLIRKRADWARNIKEP----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLC 753 (1081)
T ss_pred HHHhhcCChHHHHHHHHHHHHHhhhcCCc----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHH
Confidence 333334443333332222111 111111 123344455666666655421 1111111 1233444444
Q ss_pred HHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH-hHHHHHhhcCCHH
Q 037477 485 INGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPE-PFVQYISKFGTVE 563 (639)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~g~~~ 563 (639)
...+.+...+.-|-++|..|-+. ..+++.....++|++|..+-++..+ +.||.. .|...++...+++
T Consensus 754 a~ylk~l~~~gLAaeIF~k~gD~----------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFe 821 (1081)
T KOG1538|consen 754 ATYLKKLDSPGLAAEIFLKMGDL----------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFE 821 (1081)
T ss_pred HHHHhhccccchHHHHHHHhccH----------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHH
Confidence 44555666777888888877432 4567778888999999888877665 445543 4555666555555
Q ss_pred HHHHHH
Q 037477 564 DASEFL 569 (639)
Q Consensus 564 ~a~~~~ 569 (639)
+|.+.|
T Consensus 822 EAqkAf 827 (1081)
T KOG1538|consen 822 EAQKAF 827 (1081)
T ss_pred HHHHHH
Confidence 555443
No 153
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.47 E-value=0.0023 Score=61.40 Aligned_cols=132 Identities=14% Similarity=0.156 Sum_probs=82.3
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037477 409 ITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQG-HCAANEVDRALLCFAKMMEKNYDADADLLDVLING 487 (639)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~-~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 487 (639)
.+|..+|...-+.+..+.|..+|.+..+.+. .+...|...... |...++.+.|..+|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 3577777777777777777778777775432 123334333333 22345666677888777765 35566777777777
Q ss_pred HHcCCChhHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 488 FLSQKRVNGAYKLLVEMIEKVRLRP-WQATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
+.+.|+.+.|..+|++......... ....|...++.=.+.|+++.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777788888888877765311111 224777777777777888888888777776
No 154
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.45 E-value=0.25 Score=53.48 Aligned_cols=347 Identities=12% Similarity=-0.025 Sum_probs=177.9
Q ss_pred cChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCCHHHHH
Q 037477 244 IYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIK--ISRQFQKFRMMEDAV 321 (639)
Q Consensus 244 ~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~--li~~~~~~g~~~~a~ 321 (639)
+....|+.-|+...+. -+.|...|..+..+|.++|++..|.++|++..... |+ .+|.. ....-+..|.+++|+
T Consensus 576 ~n~h~aV~~fQsALR~--dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~-s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 576 HNLHGAVCEFQSALRT--DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PL-SKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred cchhhHHHHHHHHhcC--CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cH-hHHHHHHHHHHHHHhhhHHHHH
Confidence 4555677777766421 13378889999999999999999999998877653 32 22222 222345667777777
Q ss_pred HHHHHhhcCC-----CCCC-HHHHHHHHHH---------------------HhhcCCC---c------hhHHHHHHHHHH
Q 037477 322 KLFEFMMDGP-----YKPS-VQDCSLLLRS---------------------ISSINNP---D------LGLVFRVANKYE 365 (639)
Q Consensus 322 ~l~~~m~~~g-----~~p~-~~~~~~ll~~---------------------~~~~~~~---~------~~~~~~~~~~~~ 365 (639)
..+......- .+.+ ..++-.+... ++...+. + .+.+-..+-...
T Consensus 651 d~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e 730 (1238)
T KOG1127|consen 651 DALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEE 730 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhc
Confidence 7666553210 0000 0111000000 0000000 0 011122222222
Q ss_pred hcCCCCChhhHHHHHHHHHccCCh---h---HHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cC----CHHHHHHHH
Q 037477 366 SLGNSLSKSVYDGIHRALTKLGRF---D---EAEKMMKAMKNAGFEPDNITYSQVIFGLCK----AG----RFEDACNVL 431 (639)
Q Consensus 366 ~~~~~~~~~~~~~li~~~~~~g~~---~---~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g----~~~~A~~~~ 431 (639)
...|+......+..-.-+.+.. + -+.+.+-.-.+. ..+..+|..+...|.+ .| +...|+..+
T Consensus 731 --~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl--~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~ 806 (1238)
T KOG1127|consen 731 --PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL--AIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCC 806 (1238)
T ss_pred --ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH--hhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHH
Confidence 2244444444444434444333 1 122222211111 1223444444433332 11 234566777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCC
Q 037477 432 DEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLR 511 (639)
Q Consensus 432 ~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 511 (639)
.+..+... -+..+||.|--. ...|++.-+...|-+-.... +-...+|..+--.+.+..+++.|...|..... +.
T Consensus 807 KkaV~L~a-nn~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS---Ld 880 (1238)
T KOG1127|consen 807 KKAVSLCA-NNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS---LD 880 (1238)
T ss_pred HHHHHHhh-ccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhh---cC
Confidence 76665432 266677766444 55577777777665555443 33556676666667788888888888877653 34
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCChHhHHHHH---hhcC----------CHHHHHHHHHHhh
Q 037477 512 P-WQATFKTLIEKLLGARRLEEAMNLLRLMKK----QNYPPFPEPFVQYI---SKFG----------TVEDASEFLKALS 573 (639)
Q Consensus 512 p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~~~~~ll---~~~g----------~~~~a~~~~~~~~ 573 (639)
| +...|..........|+.-++..+|..--+ .|-.|+..-+.... ...| +...|.-.++...
T Consensus 881 P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf 960 (1238)
T KOG1127|consen 881 PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYF 960 (1238)
T ss_pred chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHH
Confidence 4 355566665556667777777777766221 22233322221111 1223 3333444455555
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 037477 574 VKEYPSSAAYLQVFESFFNEGRHYEAKDLLYK 605 (639)
Q Consensus 574 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 605 (639)
...|.....|.+.....-+.+.+++|.++..+
T Consensus 961 ~~~p~~~fAy~~~gstlEhL~ey~~a~ela~R 992 (1238)
T KOG1127|consen 961 LGHPQLCFAYAANGSTLEHLEEYRAALELATR 992 (1238)
T ss_pred hcCcchhHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 55666777777777777777777766665544
No 155
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.43 E-value=0.003 Score=55.74 Aligned_cols=88 Identities=19% Similarity=0.179 Sum_probs=63.3
Q ss_pred CCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC----------------ChhHHHH
Q 037477 441 PDIKTWTILIQGHCA-----ANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQK----------------RVNGAYK 499 (639)
Q Consensus 441 p~~~t~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----------------~~~~A~~ 499 (639)
.|..+|..+++.|.+ .|.++-....+..|.+.|+.-|..+|+.|++.+=+.. +-+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 477888888888775 4788888999999999999999999999999887632 2234555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 037477 500 LLVEMIEKVRLRPWQATFKTLIEKLLGARR 529 (639)
Q Consensus 500 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 529 (639)
++++|... |+.||..++..+++.+++.+.
T Consensus 125 lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENN-GVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHc-CCCCcHHHHHHHHHHhccccH
Confidence 55555443 566666666666555555443
No 156
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.42 E-value=0.00043 Score=50.20 Aligned_cols=64 Identities=20% Similarity=0.294 Sum_probs=55.3
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCccccCChhHHHhhh
Q 037477 558 KFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHHIRQDSKISLLFG 621 (639)
Q Consensus 558 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~~ 621 (639)
+.|++++|.+.|+++....|.+...+..++.+|.+.|++++|.+++++.......++.+..+.+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 5789999999999999999999999999999999999999999999999776666666666543
No 157
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.37 E-value=0.0037 Score=48.37 Aligned_cols=90 Identities=19% Similarity=0.221 Sum_probs=45.5
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 037477 379 IHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANE 458 (639)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~ 458 (639)
+...+...|++++|.+.++...+.. +.+...+..+...+...|++++|.+.|+...+.... +..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHHHh
Confidence 4444555556666666665555442 222344445555555555555555555555543321 22344555555555555
Q ss_pred HHHHHHHHHHHH
Q 037477 459 VDRALLCFAKMM 470 (639)
Q Consensus 459 ~~~a~~~~~~m~ 470 (639)
.+.|...+....
T Consensus 84 ~~~a~~~~~~~~ 95 (100)
T cd00189 84 YEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
No 158
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.28 E-value=0.061 Score=51.89 Aligned_cols=213 Identities=12% Similarity=0.084 Sum_probs=113.1
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCC-----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037477 376 YDGIHRALTKLGRFDEAEKMMKAMKNAGFEPD-----NITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILI 450 (639)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li 450 (639)
|......|-..|++++|.+.|....+.....+ ...|.....+|.+. ++++|.. .|...+
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~---------------~~~~A~ 101 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIE---------------CYEKAI 101 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHH---------------HHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHH---------------HHHHHH
Confidence 45566667777777777777766542211000 01111111222111 3333332 333444
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-CChhHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHH
Q 037477 451 QGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQ-KRVNGAYKLLVEMIEKVRLRPW----QATFKTLIEKLL 525 (639)
Q Consensus 451 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~ 525 (639)
..|...|++..|-+++.++ ...|... |++++|++.|++..+-+...-. ..++..+...+.
T Consensus 102 ~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA 166 (282)
T ss_dssp HHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH
Confidence 5556666666665555443 3345555 7788888877766543211112 345566777888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC-----hH--hHHHHHh--hcCCHHHHHHHHHHhhcCCC---CC--HHHHHHHHHHHH
Q 037477 526 GARRLEEAMNLLRLMKKQNYPPF-----PE--PFVQYIS--KFGTVEDASEFLKALSVKEY---PS--SAAYLQVFESFF 591 (639)
Q Consensus 526 ~~g~~~~A~~~~~~m~~~~~~p~-----~~--~~~~ll~--~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~l~~~~~ 591 (639)
+.|++++|.++|++......... .. .+..+++ ..|+...|...++......| .+ ......|+.+|-
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 88999999999988876433221 11 1233333 45888889999988876632 22 334556777775
Q ss_pred h--cCCHHHHHHHHhhCCccccCChhHHHhhhc
Q 037477 592 N--EGRHYEAKDLLYKCPHHIRQDSKISLLFGS 622 (639)
Q Consensus 592 ~--~g~~~~A~~~~~~m~~~~~~~~~~~~l~~~ 622 (639)
. ...+++|+.-|+.+. +-++|.+.++-.
T Consensus 247 ~~D~e~f~~av~~~d~~~---~ld~w~~~~l~~ 276 (282)
T PF14938_consen 247 EGDVEAFTEAVAEYDSIS---RLDNWKTKMLLK 276 (282)
T ss_dssp TT-CCCHHHHCHHHTTSS------HHHHHHHHH
T ss_pred hCCHHHHHHHHHHHcccC---ccHHHHHHHHHH
Confidence 4 346777777777763 457777766543
No 159
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.26 E-value=0.013 Score=47.84 Aligned_cols=93 Identities=11% Similarity=0.079 Sum_probs=44.9
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHH
Q 037477 378 GIHRALTKLGRFDEAEKMMKAMKNAGFEPD----NITYSQVIFGLCKAGRFEDACNVLDEMEENGCI--PDIKTWTILIQ 451 (639)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~t~~~li~ 451 (639)
.....+.+.|++++|.+.|..+.+.. |+ ...+..+...+.+.|++++|...|+.+...... .....+..+..
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34444555555555555555555432 11 223344555555555555555555555443211 01233444445
Q ss_pred HHHHcCCHHHHHHHHHHHHHc
Q 037477 452 GHCAANEVDRALLCFAKMMEK 472 (639)
Q Consensus 452 ~~~~~g~~~~a~~~~~~m~~~ 472 (639)
++.+.|+.++|...++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 555555555555555555554
No 160
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.23 E-value=0.0057 Score=47.26 Aligned_cols=92 Identities=13% Similarity=0.088 Sum_probs=46.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 037477 412 SQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQ 491 (639)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 491 (639)
..+...+...|++++|...+++..+.... +...+..+...+...|++++|.+.++...+.. +.+..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 33444555556666666666655543211 22444555555555555555555555555443 22233444445555555
Q ss_pred CChhHHHHHHHHHH
Q 037477 492 KRVNGAYKLLVEMI 505 (639)
Q Consensus 492 g~~~~A~~~~~~m~ 505 (639)
|++++|...+....
T Consensus 82 ~~~~~a~~~~~~~~ 95 (100)
T cd00189 82 GKYEEALEAYEKAL 95 (100)
T ss_pred HhHHHHHHHHHHHH
Confidence 55555555555443
No 161
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.19 E-value=0.0039 Score=59.83 Aligned_cols=131 Identities=13% Similarity=0.147 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037477 444 KTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLING-FLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIE 522 (639)
Q Consensus 444 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 522 (639)
.+|..++...-+.+..+.|..+|.+..+.+ ..+..+|...... |...++.+.|.++|+...+.++ .+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~--~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP--SDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT--T-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHH
Confidence 468888888888888999999999998643 2234444444444 3335667779999999888744 35667888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCh---HhHHHHH---hhcCCHHHHHHHHHHhhcCCCC
Q 037477 523 KLLGARRLEEAMNLLRLMKKQNYPPFP---EPFVQYI---SKFGTVEDASEFLKALSVKEYP 578 (639)
Q Consensus 523 ~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~ll---~~~g~~~~a~~~~~~~~~~~~~ 578 (639)
.+.+.|+.+.|..+|++.... +.++. ..|..++ .++|+++....+.+++.+..+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 888999999999999998865 33322 2344443 6788999888888888876544
No 162
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.13 E-value=0.02 Score=46.83 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=9.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 037477 414 VIFGLCKAGRFEDACNVLDEME 435 (639)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~ 435 (639)
+...+.+.|++++|...|.++.
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~ 29 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFL 29 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 3333444444444444444443
No 163
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.12 E-value=0.2 Score=46.93 Aligned_cols=58 Identities=5% Similarity=-0.078 Sum_probs=42.6
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHhhcC
Q 037477 272 ILRVLARHESVRDFWNVVEEMKKEGYEMDIDTY---IKISRQFQKFRMMEDAVKLFEFMMDG 330 (639)
Q Consensus 272 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~---~~li~~~~~~g~~~~a~~l~~~m~~~ 330 (639)
....+.+.|++++|.+.|+.+...-.. +.... -.+..++.+.+++++|...+++..+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 444566789999999999999876322 22222 34567788899999999999988775
No 164
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.09 E-value=0.27 Score=46.50 Aligned_cols=308 Identities=12% Similarity=0.064 Sum_probs=177.7
Q ss_pred CCChHHHHHHHHHHhhcCCCCCChHHHHHHHH---HHhccCChHHHHHHHHHHHhcCCCCCHHHHHH-HHHHHHhcCchh
Q 037477 106 DNDPEKASAFFNWVCDKKQFRPSSTVYSLMLR---NLVNKDSLKQFWVTLRRMKEDHCYIEEETYLS-ILGVLKKAKKAS 181 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~---~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~-ll~~~~~~~~~~ 181 (639)
.+.+.+|+.-|..+.+ .|+..|-++-+ .|.-.|+...|+.=+....+. +||-..-.. --..+.+.|.++
T Consensus 51 ~~Q~sDALt~yHaAve-----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Gele 123 (504)
T KOG0624|consen 51 RGQLSDALTHYHAAVE-----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGELE 123 (504)
T ss_pred hhhHHHHHHHHHHHHc-----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcccHH
Confidence 4788888888888877 67777776654 566677777787777777664 466432211 112245666555
Q ss_pred hHHHHHHHHHHHhhhccchh----HHHHHHHHHhcCCchHHHHHHHhhccCcCCHHHHHHHHHHh-ccChHHHHHHHHHH
Q 037477 182 DLAALNQFHDGMVKEIAMDN----VAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKEL-RIYPVKALGFFRWV 256 (639)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~A~~~f~~~ 256 (639)
.+ ..-|+.+++.+.... +.+.+.-+ .-.+..+..+.... .|+...|+.+...+
T Consensus 124 ~A---~~DF~~vl~~~~s~~~~~eaqskl~~~-------------------~e~~~l~~ql~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 124 QA---EADFDQVLQHEPSNGLVLEAQSKLALI-------------------QEHWVLVQQLKSASGSGDCQNAIEMITHL 181 (504)
T ss_pred HH---HHHHHHHHhcCCCcchhHHHHHHHHhH-------------------HHHHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 54 344555555443222 22211111 01122222222211 46667777777777
Q ss_pred hccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCH
Q 037477 257 GEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSV 336 (639)
Q Consensus 257 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~ 336 (639)
.+-. +-|...|..-..+|...|++..|+.=+....+.. ..+..++-.+-..+...|+.+.++...++.++. .||.
T Consensus 182 lEi~--~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdH 256 (504)
T KOG0624|consen 182 LEIQ--PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDH 256 (504)
T ss_pred HhcC--cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--Ccch
Confidence 5322 3377788888889999999988877666665543 335666777777888889999998888887763 4554
Q ss_pred HHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhH---HH
Q 037477 337 QDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITY---SQ 413 (639)
Q Consensus 337 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~---~~ 413 (639)
..+-..-+-+- .+.+.+.. +......+++.++.+-.+...+.......+.| ..
T Consensus 257 K~Cf~~YKklk--------Kv~K~les----------------~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~ 312 (504)
T KOG0624|consen 257 KLCFPFYKKLK--------KVVKSLES----------------AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRV 312 (504)
T ss_pred hhHHHHHHHHH--------HHHHHHHH----------------HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeehe
Confidence 33222211111 11111111 12234556666666666666555322122223 23
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 037477 414 VIFGLCKAGRFEDACNVLDEMEENGCIPD-IKTWTILIQGHCAANEVDRALLCFAKMMEKN 473 (639)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 473 (639)
+-.++...|++.+|++.-.+..+- .|| +.++---..+|.-...++.|+.-|+...+.+
T Consensus 313 ~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 313 LCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred eeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 445556677777777777776653 233 5666666667777777777777777766653
No 165
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.05 E-value=0.05 Score=45.92 Aligned_cols=88 Identities=8% Similarity=-0.035 Sum_probs=43.1
Q ss_pred HHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 037477 382 ALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDR 461 (639)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~ 461 (639)
.+...|++++|.++|+.+.... +-+..-|-.|.-+|-..|++++|+..|.......+. |...+-.+..++...|+.+.
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~~~~ 121 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDNVCY 121 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCCHHH
Confidence 3444555555555555555442 223333444444455555555555555555544432 44444445555555555555
Q ss_pred HHHHHHHHHH
Q 037477 462 ALLCFAKMME 471 (639)
Q Consensus 462 a~~~~~~m~~ 471 (639)
|.+.|+..+.
T Consensus 122 A~~aF~~Ai~ 131 (157)
T PRK15363 122 AIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 166
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.02 E-value=0.0016 Score=49.57 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=8.5
Q ss_pred HHHHHHcCCChhHHHHHHHH
Q 037477 484 LINGFLSQKRVNGAYKLLVE 503 (639)
Q Consensus 484 li~~~~~~g~~~~A~~~~~~ 503 (639)
+..+|.+.|++++|..+++.
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 33444444444444444433
No 167
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.98 E-value=0.37 Score=46.89 Aligned_cols=108 Identities=22% Similarity=0.288 Sum_probs=65.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHhhcC
Q 037477 481 LDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYISKFG 560 (639)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~g 560 (639)
.+..|.-+...|....|.++-.+ +.+ |+..-|...+.+++..|+|++-.++.+. ...+.....|...+.+.|
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~----Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKE----FKV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH----cCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHCC
Confidence 34445555666766666555443 333 6777777777777777777776655432 223344556666666777
Q ss_pred CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 037477 561 TVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYK 605 (639)
Q Consensus 561 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 605 (639)
+..+|..+..++. +..-+..|.+.|+|.+|.+.-.+
T Consensus 252 ~~~eA~~yI~k~~---------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 252 NKKEASKYIPKIP---------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CHHHHHHHHHhCC---------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777777766622 13456667777777777665443
No 168
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.97 E-value=0.15 Score=43.87 Aligned_cols=141 Identities=16% Similarity=0.185 Sum_probs=97.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhC--CCCCCHHHH
Q 037477 440 IPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKV--RLRPWQATF 517 (639)
Q Consensus 440 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~p~~~~~ 517 (639)
.|++..--.|..+....|+..+|...|++....-+.-|....-.+.++....++...|...++.+.+-. +-.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 467777777888888888888888888887775556677777777788888888888888888776642 22344 45
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh---HhHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHH
Q 037477 518 KTLIEKLLGARRLEEAMNLLRLMKKQNYPPFP---EPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYL 584 (639)
Q Consensus 518 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 584 (639)
..+.+.|...|+..+|...|+.... ..|+. .-|..++.+.|+.+++..-+..+.+....+..+|.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~H~r 231 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVVDTAKRSRPHYR 231 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcchhHH
Confidence 5666778888888888888888776 33443 24566777888777776555444443333344443
No 169
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.97 E-value=0.022 Score=56.89 Aligned_cols=91 Identities=13% Similarity=0.003 Sum_probs=60.5
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 037477 380 HRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEV 459 (639)
Q Consensus 380 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~ 459 (639)
...+...|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..+++..+.... +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCH
Confidence 345556677777777777776654 334556666667777777777777777777665422 455666666777777777
Q ss_pred HHHHHHHHHHHHc
Q 037477 460 DRALLCFAKMMEK 472 (639)
Q Consensus 460 ~~a~~~~~~m~~~ 472 (639)
++|...|++.++.
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777777664
No 170
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.95 E-value=0.058 Score=47.61 Aligned_cols=82 Identities=15% Similarity=0.103 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037477 411 YSQVIFGLCKAGRFEDACNVLDEMEENGCIPD--IKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGF 488 (639)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (639)
+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+.. +-+...+..+...|
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 34444444555555555555555543322111 2344455555555555555555555555432 11233333444444
Q ss_pred HcCCC
Q 037477 489 LSQKR 493 (639)
Q Consensus 489 ~~~g~ 493 (639)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 44444
No 171
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.94 E-value=0.1 Score=50.30 Aligned_cols=21 Identities=5% Similarity=-0.070 Sum_probs=12.0
Q ss_pred HHHHHcCCChhHHHHHHHHHH
Q 037477 273 LRVLARHESVRDFWNVVEEMK 293 (639)
Q Consensus 273 i~~~~~~g~~~~a~~~~~~m~ 293 (639)
...|-..|++++|.+.|....
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa 62 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAA 62 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHH
Confidence 345666667777766666543
No 172
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.93 E-value=0.13 Score=48.04 Aligned_cols=176 Identities=10% Similarity=0.096 Sum_probs=100.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-
Q 037477 414 VIFGLCKAGRFEDACNVLDEMEENGCIPDIKT--WTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLS- 490 (639)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~- 490 (639)
....+...|++++|.+.|+++...-..+.... .-.+..++.+.+++++|...+++.++....-...-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 33444567788888888887776543321111 123556667778888888888877775322222233333333321
Q ss_pred -CC---------------C---hhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHh
Q 037477 491 -QK---------------R---VNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEP 551 (639)
Q Consensus 491 -~g---------------~---~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 551 (639)
.+ + ..+|+..|+++.+++ |+ ..-..+|...+..+... +.-....
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~-------------S~ya~~A~~rl~~l~~~-la~~e~~ 180 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PN-------------SQYTTDATKRLVFLKDR-LAKYELS 180 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cC-------------ChhHHHHHHHHHHHHHH-HHHHHHH
Confidence 10 1 234555566655542 33 22234444433333221 0011122
Q ss_pred HHHHHhhcCCHHHHHHHHHHhhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 552 FVQYISKFGTVEDASEFLKALSVKEY---PSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 552 ~~~ll~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
...++-+.|.+..|..-++.+.+..| ...+....++.+|...|..++|.+.....
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 34445677888889999999988743 45566778889999999999998877654
No 173
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.93 E-value=0.0032 Score=47.88 Aligned_cols=81 Identities=19% Similarity=0.218 Sum_probs=53.5
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 037477 421 AGRFEDACNVLDEMEENGCI-PDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYK 499 (639)
Q Consensus 421 ~g~~~~A~~~~~~m~~~~~~-p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 499 (639)
.|+++.|+.+++++.+.... ++...+-.+..+|.+.|++++|..++++ .+.+. .+......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 57788888888888776432 2344555578888888888888888877 33221 123444455677888888888888
Q ss_pred HHHH
Q 037477 500 LLVE 503 (639)
Q Consensus 500 ~~~~ 503 (639)
.|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8765
No 174
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.93 E-value=0.058 Score=47.60 Aligned_cols=91 Identities=11% Similarity=-0.019 Sum_probs=70.2
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037477 373 KSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPD--NITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILI 450 (639)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li 450 (639)
...+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+.... +...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 34567777888899999999999999986543332 357888899999999999999999999875432 466677777
Q ss_pred HHHHHcCCHHHHHH
Q 037477 451 QGHCAANEVDRALL 464 (639)
Q Consensus 451 ~~~~~~g~~~~a~~ 464 (639)
..+...|+...+..
T Consensus 114 ~~~~~~g~~~~a~~ 127 (172)
T PRK02603 114 VIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHcCChHhHhh
Confidence 78888777655443
No 175
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.91 E-value=0.015 Score=47.62 Aligned_cols=53 Identities=17% Similarity=0.134 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 037477 473 NYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLL 525 (639)
Q Consensus 473 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~ 525 (639)
...|+..+..+++.+|+..|++..|+++.+...+.+++.-+..+|..|++-+.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 45678888888888888888888888888888888887777788888776443
No 176
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.87 E-value=0.092 Score=44.35 Aligned_cols=98 Identities=12% Similarity=0.097 Sum_probs=79.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 037477 413 QVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQK 492 (639)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 492 (639)
.+..-+...|++++|..+|+-+...... +..-|-.|.-+|-..|++++|++.|......+ +-|...+-.+-.++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 3445566889999999999998876543 56677788888889999999999999999877 357777888888999999
Q ss_pred ChhHHHHHHHHHHHhCCCCC
Q 037477 493 RVNGAYKLLVEMIEKVRLRP 512 (639)
Q Consensus 493 ~~~~A~~~~~~m~~~~~~~p 512 (639)
+.+.|.+.|+......+-.|
T Consensus 118 ~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 118 NVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred CHHHHHHHHHHHHHHhccCh
Confidence 99999999998877654444
No 177
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.85 E-value=0.0029 Score=45.25 Aligned_cols=54 Identities=13% Similarity=0.161 Sum_probs=46.1
Q ss_pred HHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037477 554 QYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCP 607 (639)
Q Consensus 554 ~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 607 (639)
..+...|++++|...|+.+.+..|.+...+..+..++.+.|++++|...+++..
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345678899999999999999988899999999999999999999999998863
No 178
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.84 E-value=0.036 Score=55.32 Aligned_cols=84 Identities=11% Similarity=-0.026 Sum_probs=37.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 037477 420 KAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYK 499 (639)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 499 (639)
..|++++|+..|++..+.... +...|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|..
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 444444444444444443322 33344444444444445544444444444432 1233344444444444445554544
Q ss_pred HHHHHH
Q 037477 500 LLVEMI 505 (639)
Q Consensus 500 ~~~~m~ 505 (639)
.|+...
T Consensus 92 ~~~~al 97 (356)
T PLN03088 92 ALEKGA 97 (356)
T ss_pred HHHHHH
Confidence 444444
No 179
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.83 E-value=0.1 Score=54.57 Aligned_cols=141 Identities=9% Similarity=0.053 Sum_probs=91.5
Q ss_pred CCCCHHhHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHc--------CCHHHHHHHHHHH
Q 037477 404 FEPDNITYSQVIFGLCKAG-----RFEDACNVLDEMEENGCIPD-IKTWTILIQGHCAA--------NEVDRALLCFAKM 469 (639)
Q Consensus 404 ~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~~~~p~-~~t~~~li~~~~~~--------g~~~~a~~~~~~m 469 (639)
.+.+...|...+.+..... ..++|..+|++..+.. |+ ...|..+..++... ++...+.+...+.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3567778888877754432 3668888888888754 44 34444443333322 1223344444443
Q ss_pred HHc-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 037477 470 MEK-NYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPF 548 (639)
Q Consensus 470 ~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 548 (639)
... ....+...|.++.-.....|++++|...+++..+. .|+...|..+...+...|+.++|.+.+++... +.|.
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L---~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~ 485 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL---EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPG 485 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCC
Confidence 332 22345566777766666778999999999988764 46777888888888999999999999988876 4455
Q ss_pred hHh
Q 037477 549 PEP 551 (639)
Q Consensus 549 ~~~ 551 (639)
..+
T Consensus 486 ~pt 488 (517)
T PRK10153 486 ENT 488 (517)
T ss_pred Cch
Confidence 444
No 180
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.77 E-value=0.0098 Score=55.07 Aligned_cols=88 Identities=16% Similarity=0.071 Sum_probs=45.9
Q ss_pred HHcCCChhHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH----hHHHHHhhcCCH
Q 037477 488 FLSQKRVNGAYKLLVEMIEKVRLRPW-QATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPE----PFVQYISKFGTV 562 (639)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~g~~ 562 (639)
..+.+++.+|+..|.+..+- .|+ .+.|..-..+|++.|.++.|++-.+..+. +.|... ++...+...|++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l---~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIEL---DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhc---CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcH
Confidence 44556666666666666542 332 33444445566666666666665555443 223211 122223455666
Q ss_pred HHHHHHHHHhhcCCCCCH
Q 037477 563 EDASEFLKALSVKEYPSS 580 (639)
Q Consensus 563 ~~a~~~~~~~~~~~~~~~ 580 (639)
++|++.|++..+..|.+.
T Consensus 166 ~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHHHHhhhccCCCcH
Confidence 666666666666555554
No 181
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.67 E-value=0.057 Score=47.44 Aligned_cols=94 Identities=16% Similarity=0.038 Sum_probs=56.3
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037477 408 NITYSQVIFGLCKAGRFEDACNVLDEMEENGCIP--DIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLI 485 (639)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 485 (639)
...|..+...+...|++++|...|++.......+ ...+|..+...+...|+.++|.+.+++..... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3445566666667777777777777776543222 22466677777777777777777777776642 22334455555
Q ss_pred HHHH-------cCCChhHHHHHHH
Q 037477 486 NGFL-------SQKRVNGAYKLLV 502 (639)
Q Consensus 486 ~~~~-------~~g~~~~A~~~~~ 502 (639)
..+. ..|+++.|...++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHH
Confidence 5555 5556554444443
No 182
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.67 E-value=0.0083 Score=43.31 Aligned_cols=63 Identities=11% Similarity=0.220 Sum_probs=45.3
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 037477 277 ARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLL 342 (639)
Q Consensus 277 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l 342 (639)
.+.|++++|.++|+.+.... +-+...+..+..+|.+.|++++|..+++.+... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 45788888888888887764 337777778888888888888888888888765 4554444433
No 183
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.66 E-value=0.22 Score=45.37 Aligned_cols=147 Identities=12% Similarity=0.062 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 037477 266 TITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRS 345 (639)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~ 345 (639)
....+.++.++.-.|.+.-...++++..+..-+-++.....+++.-.+.||.+.|...|++..+..-+.|..+.+.++
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V-- 254 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMV-- 254 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHH--
Confidence 345677888888889999999999999998767788889999999999999999999999876543333333222222
Q ss_pred HhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHH
Q 037477 346 ISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFE 425 (639)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 425 (639)
.......|.-.+++..|...+.+..... +.|+...|.-.-+..-.|+..
T Consensus 255 ------------------------------~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~ 303 (366)
T KOG2796|consen 255 ------------------------------LMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLK 303 (366)
T ss_pred ------------------------------HhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHH
Confidence 2223344556677777888887776554 334555554444445578888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH
Q 037477 426 DACNVLDEMEENGCIPDIKTWT 447 (639)
Q Consensus 426 ~A~~~~~~m~~~~~~p~~~t~~ 447 (639)
+|.+.++.|.+.- |...+-+
T Consensus 304 DAiK~~e~~~~~~--P~~~l~e 323 (366)
T KOG2796|consen 304 DALKQLEAMVQQD--PRHYLHE 323 (366)
T ss_pred HHHHHHHHHhccC--Cccchhh
Confidence 8888888888754 4444433
No 184
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.65 E-value=0.057 Score=47.46 Aligned_cols=96 Identities=10% Similarity=-0.017 Sum_probs=70.2
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037477 373 KSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEP--DNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILI 450 (639)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li 450 (639)
...+..+...+...|++++|...|+........+ ...+|..+...|...|++++|+..+++...... ....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-FLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHH
Confidence 3456677778888999999999999997663222 235788889999999999999999999887532 2345666666
Q ss_pred HHHH-------HcCCHHHHHHHHHHH
Q 037477 451 QGHC-------AANEVDRALLCFAKM 469 (639)
Q Consensus 451 ~~~~-------~~g~~~~a~~~~~~m 469 (639)
..+. ..|+++.|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 6666 666766555555443
No 185
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.029 Score=52.29 Aligned_cols=108 Identities=14% Similarity=0.028 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCChH-hHHHHH-h--hcCCHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 037477 513 WQATFKTLIEKLLGARRLEEAMNLLRLMKK-QNYPPFPE-PFVQYI-S--KFGTVEDASEFLKALSVKEYPSSAAYLQVF 587 (639)
Q Consensus 513 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~-~~~~ll-~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 587 (639)
|...|-.|-..|...|+...|..-|.+..+ .|-.|+.. -+...+ . ......++..+|+++...++.+..+...|.
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA 234 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLA 234 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 455666677777777777777777766665 22222221 111111 1 223445677788888888888888888888
Q ss_pred HHHHhcCCHHHHHHHHhhCCc-cccCChhHHHhh
Q 037477 588 ESFFNEGRHYEAKDLLYKCPH-HIRQDSKISLLF 620 (639)
Q Consensus 588 ~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~l~ 620 (639)
..+...|++.+|...|+.|.+ .+..+++...+-
T Consensus 235 ~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 235 FAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred HHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 888888888888888888743 345555555443
No 186
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.61 E-value=0.041 Score=44.61 Aligned_cols=101 Identities=19% Similarity=0.178 Sum_probs=57.2
Q ss_pred HHHHHcCCChhHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hH---hHH-HH
Q 037477 485 INGFLSQKRVNGAYKLLVEMIEKVRLRPW--QATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPF---PE---PFV-QY 555 (639)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~---~~~-~l 555 (639)
-.++-..|+.++|..+|++.... |+... ...+-.+-..+...|++++|..+++...... |+ .. .|. ..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence 34566677777777777777765 55443 2344455566777777777777777766532 22 11 121 22
Q ss_pred HhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 037477 556 ISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFF 591 (639)
Q Consensus 556 l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 591 (639)
+...|+.++|...+-..... +...|..-+..|.
T Consensus 85 L~~~gr~~eAl~~~l~~la~---~~~~y~ra~~~ya 117 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALAE---TLPRYRRAIRFYA 117 (120)
T ss_pred HHHCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 24567777777765444332 2224444444443
No 187
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.52 E-value=0.23 Score=40.36 Aligned_cols=87 Identities=21% Similarity=0.166 Sum_probs=42.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHH
Q 037477 416 FGLCKAGRFEDACNVLDEMEENGCIPD--IKTWTILIQGHCAANEVDRALLCFAKMMEKNYDAD----ADLLDVLINGFL 489 (639)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~ 489 (639)
.++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..++++..... |+ ......+..++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHH
Confidence 344445666666666666555554322 1233444455556666666666666555431 21 111111222445
Q ss_pred cCCChhHHHHHHHHH
Q 037477 490 SQKRVNGAYKLLVEM 504 (639)
Q Consensus 490 ~~g~~~~A~~~~~~m 504 (639)
..|+.++|+..+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 556666666555443
No 188
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.51 E-value=0.23 Score=52.10 Aligned_cols=144 Identities=13% Similarity=0.077 Sum_probs=98.6
Q ss_pred cCCCCChhhHHHHHHHHHcc-----CChhHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcC--------CHHHHHHHHH
Q 037477 367 LGNSLSKSVYDGIHRALTKL-----GRFDEAEKMMKAMKNAGFEPD-NITYSQVIFGLCKAG--------RFEDACNVLD 432 (639)
Q Consensus 367 ~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g--------~~~~A~~~~~ 432 (639)
...+.+...|...+++.... ++.+.|..+|++..+. .|+ ...|..+..++.... ++..+.+...
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 34455667788777765443 2367899999999887 455 445554444443221 2334444444
Q ss_pred HHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCC
Q 037477 433 EMEEN-GCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLR 511 (639)
Q Consensus 433 ~m~~~-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 511 (639)
+.... ....+...|..+.-.+...|++++|...+++.++.+ |+...|..+...|...|+.++|...+++.... .
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L---~ 483 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL---R 483 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---C
Confidence 43332 122355778777777778899999999999999885 57889999999999999999999999988754 4
Q ss_pred CCHHHH
Q 037477 512 PWQATF 517 (639)
Q Consensus 512 p~~~~~ 517 (639)
|...+|
T Consensus 484 P~~pt~ 489 (517)
T PRK10153 484 PGENTL 489 (517)
T ss_pred CCCchH
Confidence 444444
No 189
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.46 E-value=1.1 Score=44.47 Aligned_cols=337 Identities=12% Similarity=0.118 Sum_probs=197.0
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcC--------C-------HHHHHHHHH
Q 037477 265 NTITYNGILRVLARHESVRDFWNVVEEMKKEG----YEMDIDTYIKISRQFQKFR--------M-------MEDAVKLFE 325 (639)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~p~~~~~~~li~~~~~~g--------~-------~~~a~~l~~ 325 (639)
|..-=+..+..+.+.|++.+++.++++|..+= +.-+..+|+.++-.+.+.= . ++-+.-...
T Consensus 127 df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~k 206 (549)
T PF07079_consen 127 DFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLK 206 (549)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHH
Confidence 33444666777778888888888777776542 3357777777554443321 1 122222222
Q ss_pred Hhhc------CCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChh-hHHHHHHHHHccCChhHHHHHHHH
Q 037477 326 FMMD------GPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKS-VYDGIHRALTKLGRFDEAEKMMKA 398 (639)
Q Consensus 326 ~m~~------~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~ 398 (639)
+|.. ..+.|.......++....-.......-..++...++..-..|+.. +...++..+.+ +.+++..+-+.
T Consensus 207 ki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ 284 (549)
T PF07079_consen 207 KIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEA 284 (549)
T ss_pred HHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHH
Confidence 2221 135566666667776666555555666777788887777777643 44555555555 56666665555
Q ss_pred HHHCCCC----CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-------HHHHHHHH----cCCHHHHH
Q 037477 399 MKNAGFE----PDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWT-------ILIQGHCA----ANEVDRAL 463 (639)
Q Consensus 399 m~~~g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~-------~li~~~~~----~g~~~~a~ 463 (639)
+....+. .-..++..++...++.++..+|-+.+.-+.... |+...-. .+-+..|. .-+..+=+
T Consensus 285 ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL 362 (549)
T PF07079_consen 285 IASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYL 362 (549)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHH
Confidence 5433211 123567888889999999999999888776543 3332111 11122221 11223334
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHH---HHHcCCC-hhHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHh---cCCHHH
Q 037477 464 LCFAKMMEKNYDADADLLDVLIN---GFLSQKR-VNGAYKLLVEMIEKVRLRPWQATFKTLI----EKLLG---ARRLEE 532 (639)
Q Consensus 464 ~~~~~m~~~g~~~~~~~~~~li~---~~~~~g~-~~~A~~~~~~m~~~~~~~p~~~~~~~li----~~~~~---~g~~~~ 532 (639)
.+|+.....++.- ......|+. -+-+.|. -++|+.+++.+.+- ..-|...-|.+. .+|.+ ...+.+
T Consensus 363 ~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~r 439 (549)
T PF07079_consen 363 NLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPR 439 (549)
T ss_pred HHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 5555555544321 122223332 3455565 78899999988763 122333333222 23332 223444
Q ss_pred HHHHHHHHHhCCCCCChHh---HHHH------HhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037477 533 AMNLLRLMKKQNYPPFPEP---FVQY------ISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLL 603 (639)
Q Consensus 533 A~~~~~~m~~~~~~p~~~~---~~~l------l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 603 (639)
-..+-+-+.+.|+.|-... .... +-..|++.++.-+-.-+.+ ..|++.+|..+.-.+....++++|.+++
T Consensus 440 LlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~-iaPS~~~~RLlGl~l~e~k~Y~eA~~~l 518 (549)
T PF07079_consen 440 LLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK-IAPSPQAYRLLGLCLMENKRYQEAWEYL 518 (549)
T ss_pred HHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4445555566788775432 2222 3467999988877555554 4569999999999999999999999999
Q ss_pred hhCCcc
Q 037477 604 YKCPHH 609 (639)
Q Consensus 604 ~~m~~~ 609 (639)
.+.|.+
T Consensus 519 ~~LP~n 524 (549)
T PF07079_consen 519 QKLPPN 524 (549)
T ss_pred HhCCCc
Confidence 999864
No 190
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.42 E-value=0.073 Score=43.67 Aligned_cols=85 Identities=15% Similarity=0.099 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHH---------------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 037477 265 NTITYNGILRVLARHESVRDFWNVVEEMKK---------------EGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMD 329 (639)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---------------~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 329 (639)
|..++.++|.++++.|+++...++++..-. ....|+..+..+++.+|+.+|++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 567889999999999999999999876422 12568899999999999999999999999999876
Q ss_pred C-CCCCCHHHHHHHHHHHhhc
Q 037477 330 G-PYKPSVQDCSLLLRSISSI 349 (639)
Q Consensus 330 ~-g~~p~~~~~~~ll~~~~~~ 349 (639)
. +++.+..+|..|+.-+...
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHh
Confidence 4 6777777887777655433
No 191
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.29 E-value=0.056 Score=50.23 Aligned_cols=98 Identities=13% Similarity=0.116 Sum_probs=66.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhH
Q 037477 417 GLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNG 496 (639)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 496 (639)
-..+.+++.+|+..|.+.++.... |.+-|..=..+|++.|.++.|.+=.+..+..+ +--..+|..|-.+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 355677888888888877775433 56666667777788888777777666666543 2234567777777777778887
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHH
Q 037477 497 AYKLLVEMIEKVRLRPWQATFKT 519 (639)
Q Consensus 497 A~~~~~~m~~~~~~~p~~~~~~~ 519 (639)
|.+.|+... .+.|+-.+|-.
T Consensus 168 A~~aykKaL---eldP~Ne~~K~ 187 (304)
T KOG0553|consen 168 AIEAYKKAL---ELDPDNESYKS 187 (304)
T ss_pred HHHHHHhhh---ccCCCcHHHHH
Confidence 777777665 35666555544
No 192
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.28 E-value=1.2 Score=43.35 Aligned_cols=83 Identities=18% Similarity=0.103 Sum_probs=57.8
Q ss_pred CCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 037477 370 SLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTIL 449 (639)
Q Consensus 370 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 449 (639)
.|+...|-..+.+|+..++|++-.++-.. +.+++.|-..+.+|.+.|...+|..+... .++..-
T Consensus 205 v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~~yI~k----------~~~~~r 268 (319)
T PF04840_consen 205 VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEASKYIPK----------IPDEER 268 (319)
T ss_pred CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHHHHHHh----------CChHHH
Confidence 46666777788888888888877665432 23457788888888888888888877665 112456
Q ss_pred HHHHHHcCCHHHHHHHHHH
Q 037477 450 IQGHCAANEVDRALLCFAK 468 (639)
Q Consensus 450 i~~~~~~g~~~~a~~~~~~ 468 (639)
+..|.++|++.+|.+.-.+
T Consensus 269 v~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 269 VEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHCCCHHHHHHHHHH
Confidence 6777888888887665433
No 193
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.21 E-value=0.029 Score=39.94 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 037477 445 TWTILIQGHCAANEVDRALLCFAKM 469 (639)
Q Consensus 445 t~~~li~~~~~~g~~~~a~~~~~~m 469 (639)
.+..+..++...|++++|...|+++
T Consensus 33 a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 33 AWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333333333344444444333333
No 194
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.17 E-value=0.12 Score=52.86 Aligned_cols=265 Identities=12% Similarity=0.104 Sum_probs=145.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHH
Q 037477 298 EMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYD 377 (639)
Q Consensus 298 ~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (639)
.|....+.+-+..|...|.+++|.++--- |+.- ..|..|.. ..+ +...++
T Consensus 553 ~~~evp~~~~m~q~Ieag~f~ea~~iacl----gVv~--~DW~~LA~--------------~AL----------eAL~f~ 602 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERGLFKEAYQIACL----GVTD--TDWRELAM--------------EAL----------EALDFE 602 (1081)
T ss_pred ecccccccccchhhhhccchhhhhccccc----ceec--chHHHHHH--------------HHH----------hhhhhH
Confidence 34455566677788899999988764321 2111 12222211 111 111245
Q ss_pred HHHHHHHccCCh--hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-----HH
Q 037477 378 GIHRALTKLGRF--DEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTI-----LI 450 (639)
Q Consensus 378 ~li~~~~~~g~~--~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~-----li 450 (639)
..=.+|.+..+. -+...-+++|+++|-.|+... +...|+-.|++.+|-++|.+--..+-. ...|+- ..
T Consensus 603 ~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRA--lEmyTDlRMFD~a 677 (1081)
T KOG1538|consen 603 TARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRA--LEMYTDLRMFDYA 677 (1081)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhH--HHHHHHHHHHHHH
Confidence 555677766654 345556778888887787643 334566678888888887653321110 111111 22
Q ss_pred HHHHHcCCHHHHHHHHHHHHH--cCC-CCCHHHHHHHHHHHHcCCChhHHHHHHHH---------HHHhCCCCCCHHHHH
Q 037477 451 QGHCAANEVDRALLCFAKMME--KNY-DADADLLDVLINGFLSQKRVNGAYKLLVE---------MIEKVRLRPWQATFK 518 (639)
Q Consensus 451 ~~~~~~g~~~~a~~~~~~m~~--~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~---------m~~~~~~~p~~~~~~ 518 (639)
+-|...|..++-..+.++--+ .++ +|. +...++...|+.++|..+.-+ +-.+ --..+..+..
T Consensus 678 QE~~~~g~~~eKKmL~RKRA~WAr~~kePk-----aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rk-ld~~ere~l~ 751 (1081)
T KOG1538|consen 678 QEFLGSGDPKEKKMLIRKRADWARNIKEPK-----AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARK-LDKAEREPLL 751 (1081)
T ss_pred HHHhhcCChHHHHHHHHHHHHHhhhcCCcH-----HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhh-cchhhhhHHH
Confidence 334445554444333332222 111 221 223344556666666554321 1111 0112344555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHhhcCCHHHHHHHHHHhhcCCCCC----------HHHHHHHHH
Q 037477 519 TLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYISKFGTVEDASEFLKALSVKEYPS----------SAAYLQVFE 588 (639)
Q Consensus 519 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~g~~~~a~~~~~~~~~~~~~~----------~~~~~~l~~ 588 (639)
.+...+-+...+.-|-++|.+|-+ ......+-...+++++|..+-++..+..+.- ..-+.-.-.
T Consensus 752 ~~a~ylk~l~~~gLAaeIF~k~gD------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqk 825 (1081)
T KOG1538|consen 752 LCATYLKKLDSPGLAAEIFLKMGD------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQK 825 (1081)
T ss_pred HHHHHHhhccccchHHHHHHHhcc------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHH
Confidence 555555566777888889888843 4455555567799999999888776652211 112344557
Q ss_pred HHHhcCCHHHHHHHHhhCCcc
Q 037477 589 SFFNEGRHYEAKDLLYKCPHH 609 (639)
Q Consensus 589 ~~~~~g~~~~A~~~~~~m~~~ 609 (639)
+|.++|+-.||.+++++...+
T Consensus 826 AfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 826 AFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHHhcchHHHHHHHHHhhhh
Confidence 888999999999999986544
No 195
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.15 E-value=0.15 Score=43.52 Aligned_cols=69 Identities=14% Similarity=0.221 Sum_probs=33.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH----hCCCCCCHH
Q 037477 446 WTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIE----KVRLRPWQA 515 (639)
Q Consensus 446 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~p~~~ 515 (639)
...++..+...|+++.|..+...+.... +.|...|..+|.+|...|+..+|.+.|+.+.+ ..|+.|+..
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 3444455555666666666666665553 33555666666666666666666666555432 235555533
No 196
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.13 E-value=0.79 Score=42.07 Aligned_cols=66 Identities=15% Similarity=0.074 Sum_probs=48.5
Q ss_pred HHHHHhhcCCHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHhhCCccccCChhHH
Q 037477 552 FVQYISKFGTVEDASEFLKALSVKEYP---SSAAYLQVFESFFNEGRHYEAKDLLYKCPHHIRQDSKIS 617 (639)
Q Consensus 552 ~~~ll~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 617 (639)
...++.+.|....|..-++.|.+..+. ..+.+-.+..+|.+.|-.++|.+.-+-+..+..+.+|..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~~~~ 241 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQWYK 241 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCcchh
Confidence 344556778888888888888887433 344566778889999999999888777777766666554
No 197
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.02 E-value=0.19 Score=47.40 Aligned_cols=98 Identities=16% Similarity=0.060 Sum_probs=47.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHH
Q 037477 410 TYSQVIFGLCKAGRFEDACNVLDEMEENGCIPD--IKTWTILIQGHCAANEVDRALLCFAKMMEKNY--DADADLLDVLI 485 (639)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li 485 (639)
.|...+..+.+.|++++|...|+.+.+...... ...+-.+...|...|++++|...|+.+.+.-. ......+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444455666666666666655432110 13444455555555666666666555554310 11122233334
Q ss_pred HHHHcCCChhHHHHHHHHHHHh
Q 037477 486 NGFLSQKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~m~~~ 507 (639)
..+...|+.++|..+|+.+.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 4444555555555555555544
No 198
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.02 E-value=0.022 Score=41.76 Aligned_cols=64 Identities=20% Similarity=0.132 Sum_probs=44.7
Q ss_pred HHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCccccCChhHHH
Q 037477 555 YISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHHIRQDSKISL 618 (639)
Q Consensus 555 ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 618 (639)
++.+.+++++|.++++.+....|.++..|.....+|.+.|++++|.+.+++.....+.++....
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 3456677777777777777777777777777777788888888887777776544444444433
No 199
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.99 E-value=1.9 Score=42.76 Aligned_cols=127 Identities=14% Similarity=0.108 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHh----HH
Q 037477 478 ADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEP----FV 553 (639)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~----~~ 553 (639)
..+|...++...+..-++.|..+|-+..+..-+.+++..++++|..++. |+..-|..+|+.-.. .-||... |.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~--~f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLL--KFPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHH--hCCCchHHHHHHH
Confidence 3456666776666667777777777776652256777777777775554 666777777765443 2244333 33
Q ss_pred HHHhhcCCHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037477 554 QYISKFGTVEDASEFLKALSVKEYP--SSAAYLQVFESFFNEGRHYEAKDLLYKCP 607 (639)
Q Consensus 554 ~ll~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 607 (639)
.++...++-+.|..+|+.-..+... -...|..++.--..-|+...|..+=++|.
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 4445667777777777755544222 35667777777777777777666655553
No 200
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.95 E-value=0.045 Score=39.54 Aligned_cols=58 Identities=17% Similarity=0.165 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-ChhHHHHHHHH
Q 037477 445 TWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQK-RVNGAYKLLVE 503 (639)
Q Consensus 445 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~ 503 (639)
+|..+...+...|++++|+..|++.++.. +-+...|..+-.+|...| ++++|++.|+.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 33333344444444444444444444332 112333333333344444 34444444433
No 201
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.88 E-value=0.052 Score=39.17 Aligned_cols=63 Identities=13% Similarity=0.115 Sum_probs=35.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 037477 408 NITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAAN-EVDRALLCFAKMME 471 (639)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g-~~~~a~~~~~~m~~ 471 (639)
...|..+...+...|++++|+..|.+..+.... +...|..+..+|...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 345555555566666666666666665554322 4445555555566665 46666666655544
No 202
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.84 E-value=1.4 Score=40.04 Aligned_cols=86 Identities=14% Similarity=0.068 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 037477 445 TWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW-QATFKTLIEK 523 (639)
Q Consensus 445 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~ 523 (639)
.+..+|.-|=......+|...+..+.+.= ..---.+..-|.+.|.+..|..-++.+.+.+.-.+. ......++.+
T Consensus 112 ~~~~li~~yP~S~y~~~A~~~l~~l~~~l----a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~ 187 (203)
T PF13525_consen 112 EFEELIKRYPNSEYAEEAKKRLAELRNRL----AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEA 187 (203)
T ss_dssp HHHHHHHH-TTSTTHHHHHHHHHHHHHHH----HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCchHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence 34445555555556666666555554320 011123456788999999999999999887533222 3455677888
Q ss_pred HHhcCCHHHHH
Q 037477 524 LLGARRLEEAM 534 (639)
Q Consensus 524 ~~~~g~~~~A~ 534 (639)
|.+.|..+.+.
T Consensus 188 y~~l~~~~~a~ 198 (203)
T PF13525_consen 188 YYKLGLKQAAD 198 (203)
T ss_dssp HHHTT-HHHHH
T ss_pred HHHhCChHHHH
Confidence 88888877443
No 203
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.84 E-value=0.53 Score=42.75 Aligned_cols=48 Identities=17% Similarity=0.173 Sum_probs=33.1
Q ss_pred HHHHhhcCCHHHHHHHHHHhhcCCCCCHH---HHHHHHHHHHhcCCHHHHH
Q 037477 553 VQYISKFGTVEDASEFLKALSVKEYPSSA---AYLQVFESFFNEGRHYEAK 600 (639)
Q Consensus 553 ~~ll~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~ 600 (639)
..++-+.|.+..|..-++.+.+..|.+.. ....++.+|.+.|..+.|.
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 34456778888888888888887655544 4567788888888877543
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.83 E-value=0.26 Score=46.51 Aligned_cols=95 Identities=13% Similarity=0.063 Sum_probs=49.2
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHH
Q 037477 376 YDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDN----ITYSQVIFGLCKAGRFEDACNVLDEMEENGCI--PDIKTWTIL 449 (639)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~t~~~l 449 (639)
|...+..+.+.|++++|...|+.+.+. .|+. ..+-.+...|...|++++|...|+.+.+.-.. .....+-.+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 444444444456666666666666554 2322 24445555566666666666666666543211 112333334
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Q 037477 450 IQGHCAANEVDRALLCFAKMMEK 472 (639)
Q Consensus 450 i~~~~~~g~~~~a~~~~~~m~~~ 472 (639)
...+...|+.++|..+|+++++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 44555566666666666665554
No 205
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.68 E-value=2.5 Score=41.81 Aligned_cols=80 Identities=18% Similarity=0.159 Sum_probs=52.3
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHCC---CCCCHHhHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 037477 375 VYDGIHRALTKLGRFDEAEKMMKAMKNAG---FEPDNITYSQVIFGLCK---AGRFEDACNVLDEMEENGCIPDIKTWTI 448 (639)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 448 (639)
+.-.++-+|....+++...++.+.|...- +.-....--....++.+ .|+.++|++++..+....-.++..+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 34445556888888888889988887641 11112222234455556 7888999999888665555677778877
Q ss_pred HHHHHH
Q 037477 449 LIQGHC 454 (639)
Q Consensus 449 li~~~~ 454 (639)
+...|-
T Consensus 223 ~GRIyK 228 (374)
T PF13281_consen 223 LGRIYK 228 (374)
T ss_pred HHHHHH
Confidence 766553
No 206
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.65 E-value=0.23 Score=45.72 Aligned_cols=51 Identities=16% Similarity=0.279 Sum_probs=39.6
Q ss_pred CChHHHHHHHHHHhc-----cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 037477 127 PSSTVYSLMLRNLVN-----KDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKA 177 (639)
Q Consensus 127 ~~~~~~~~li~~~~~-----~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~ 177 (639)
.|-.+|-+++..+.. .+.++-....++.|++-|+.-|..+|..||..+-+.
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKg 120 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKG 120 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccc
Confidence 566677777766653 456666777889999999999999999999887654
No 207
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.44 E-value=0.38 Score=44.32 Aligned_cols=102 Identities=17% Similarity=0.180 Sum_probs=62.3
Q ss_pred CCCHHhHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----------------CHHHHH
Q 037477 405 EPDNITYSQVIFGLCK-----AGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAAN----------------EVDRAL 463 (639)
Q Consensus 405 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g----------------~~~~a~ 463 (639)
+.|..+|-+.+..+.. .+.++-....++.|.+-|+.-|..+|+.||..+-+.. +-+-+.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 4456666666666543 3556666666777777777778888887777765432 123456
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh-hHHHHHHHHHHH
Q 037477 464 LCFAKMMEKNYDADADLLDVLINGFLSQKRV-NGAYKLLVEMIE 506 (639)
Q Consensus 464 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~ 506 (639)
+++++|...|+.||..+-..|++++++.+-. .+..++.-.|.+
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 6666666666666666666666666665542 334444444444
No 208
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.43 E-value=1 Score=38.05 Aligned_cols=127 Identities=16% Similarity=0.220 Sum_probs=71.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 037477 447 TILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLG 526 (639)
Q Consensus 447 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 526 (639)
..++..+...+.......+++.+...+ ..+...++.++..|++... .+....+.. . .+......+++.|.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~---~----~~~yd~~~~~~~c~~ 81 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN---K----SNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh---c----cccCCHHHHHHHHHH
Confidence 345555555566666666666666655 2455666666666665432 333333331 1 122223446666777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChHhHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 037477 527 ARRLEEAMNLLRLMKKQNYPPFPEPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFN 592 (639)
Q Consensus 527 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 592 (639)
.+.++++.-++.++.. ....+..++...++.+.|.+++++- .+++.|..++..+..
T Consensus 82 ~~l~~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~~-----~~~~lw~~~~~~~l~ 137 (140)
T smart00299 82 AKLYEEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVKQ-----NNPELWAEVLKALLD 137 (140)
T ss_pred cCcHHHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHhC-----CCHHHHHHHHHHHHc
Confidence 7777777777766532 1223333444447788888877652 266777777766653
No 209
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.43 E-value=0.13 Score=43.88 Aligned_cols=69 Identities=16% Similarity=0.259 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 037477 411 YSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMME-----KNYDADADL 480 (639)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~ 480 (639)
...++..+...|++++|..+...+.....- |...|..+|.+|...|+...|.+.|+++.. .|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344455555566666666666666554322 455666666666666666666666655533 355555544
No 210
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.36 E-value=4.6 Score=42.86 Aligned_cols=112 Identities=13% Similarity=0.131 Sum_probs=72.3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037477 407 DNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLIN 486 (639)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 486 (639)
..-+.+.-+.-+...|+-.+|.++-.+.+- ||-..|-.-+.+++..+++++-+++-+.+.. ..-|.-.+.
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fki----pdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe 752 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFKI----PDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVE 752 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcCC----cchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHH
Confidence 334455566666777777777777666553 6777777777777777777766555444332 233555667
Q ss_pred HHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037477 487 GFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLR 538 (639)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 538 (639)
+|.+.|+.++|.+++-.... . .-.+.+|.+.|++.+|.++--
T Consensus 753 ~c~~~~n~~EA~KYiprv~~------l----~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVGG------L----QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHhcccHHHHhhhhhccCC------h----HHHHHHHHHhccHHHHHHHHH
Confidence 77888888888777754421 1 145667777777777776543
No 211
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.24 E-value=0.097 Score=38.88 Aligned_cols=62 Identities=16% Similarity=0.116 Sum_probs=28.4
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHh---CCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037477 480 LLDVLINGFLSQKRVNGAYKLLVEMIEK---VRL-RPW-QATFKTLIEKLLGARRLEEAMNLLRLMK 541 (639)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 541 (639)
+++.+...|...|++++|+..|++..+. .|- .|+ ..++..+...|...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444555555555555555544322 110 111 3344555555555555555555555443
No 212
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.21 E-value=1.4 Score=35.83 Aligned_cols=62 Identities=13% Similarity=0.071 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 037477 412 SQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNY 474 (639)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 474 (639)
...++.+.+.|+-+.-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++.+.-+.|+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33444444555555555555554431 124444445555555555555555555555555443
No 213
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.19 E-value=1.2 Score=41.78 Aligned_cols=99 Identities=12% Similarity=0.021 Sum_probs=44.0
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCCHHHHH
Q 037477 406 PDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAAN---EVDRALLCFAKMMEKNYDADADLLD 482 (639)
Q Consensus 406 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~~~~~~~~ 482 (639)
-|...|-.|...|...|+++.|..-|....+... ++...+..+..++.... ...++.++|++++... .-|.....
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 3445555555555555555555555555444321 23333333333332221 2334445555555442 22333333
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHH
Q 037477 483 VLINGFLSQKRVNGAYKLLVEMIE 506 (639)
Q Consensus 483 ~li~~~~~~g~~~~A~~~~~~m~~ 506 (639)
-|-..+...|++.+|...|+.|.+
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHh
Confidence 333444555555555555555544
No 214
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.10 E-value=2 Score=37.21 Aligned_cols=126 Identities=20% Similarity=0.137 Sum_probs=86.7
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHH
Q 037477 405 EPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKN---YDADADLL 481 (639)
Q Consensus 405 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~ 481 (639)
-|++..--.|..+....|+..+|...|++...--..-|....-.+.++....++.-.|...++.+.+.. -.||. .
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--H 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--h
Confidence 466666667788888888888888888888765455577777778888888888888888888887743 33443 3
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037477 482 DVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMN 535 (639)
Q Consensus 482 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 535 (639)
-.+...|...|++.+|..-|+....- -|+...-...-..+.+.|+.+++..
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~---ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY---YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 35566788888888888888887764 3443322222333556666555544
No 215
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.07 E-value=0.14 Score=37.45 Aligned_cols=15 Identities=27% Similarity=0.421 Sum_probs=5.5
Q ss_pred cCCHHHHHHHHHHHH
Q 037477 421 AGRFEDACNVLDEME 435 (639)
Q Consensus 421 ~g~~~~A~~~~~~m~ 435 (639)
.+++++|.++++.+.
T Consensus 8 ~~~~~~A~~~~~~~l 22 (73)
T PF13371_consen 8 QEDYEEALEVLERAL 22 (73)
T ss_pred CCCHHHHHHHHHHHH
Confidence 333333333333333
No 216
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.97 E-value=5.7 Score=41.77 Aligned_cols=46 Identities=17% Similarity=0.043 Sum_probs=28.3
Q ss_pred cCCHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHh
Q 037477 559 FGTVEDASEFLKALSVK--EYPSSAAYLQVFESFFNEGRHYEAKDLLY 604 (639)
Q Consensus 559 ~g~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 604 (639)
.|.+++|.+---.+.+- .-|..+.|..|.-+-+....+..--+.|-
T Consensus 1034 eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfm 1081 (1189)
T KOG2041|consen 1034 EGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFM 1081 (1189)
T ss_pred hchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHH
Confidence 48888887754444433 45677888877777666555554444443
No 217
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.93 E-value=1.8 Score=44.98 Aligned_cols=169 Identities=15% Similarity=0.084 Sum_probs=99.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 037477 304 YIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRAL 383 (639)
Q Consensus 304 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 383 (639)
+..++....-.|+-+.+++++.+..+.+---.+.. ..+| .+|..++..+
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la-~L~L------------------------------L~y~~~~~~~ 239 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLA-ALVL------------------------------LWYHLVVPSF 239 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHH-HHHH------------------------------HHHHHHHHHH
Confidence 34556666777888888888877655321111111 1111 1233333333
Q ss_pred Hc----cCChhHHHHHHHHHHHCCCCCCHHhHHHH-HHHHHhcCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHH
Q 037477 384 TK----LGRFDEAEKMMKAMKNAGFEPDNITYSQV-IFGLCKAGRFEDACNVLDEMEENGC---IPDIKTWTILIQGHCA 455 (639)
Q Consensus 384 ~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~---~p~~~t~~~li~~~~~ 455 (639)
+. ..+.+.|.++++.+.+. -|+...|... .+.+...|++++|++.|++...... +.....+--+.-.+..
T Consensus 240 ~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~ 317 (468)
T PF10300_consen 240 LGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF 317 (468)
T ss_pred cCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH
Confidence 32 45678899999999876 6777666543 3556678999999999987653111 1122233345556777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHcCCCh-------hHHHHHHHHHHH
Q 037477 456 ANEVDRALLCFAKMMEKNYDADADLLDVLIN-GFLSQKRV-------NGAYKLLVEMIE 506 (639)
Q Consensus 456 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~-~~~~~g~~-------~~A~~~~~~m~~ 506 (639)
.+++++|.+.|.++.+.. .....+|.-+.. ++...|+. ++|.++|.+...
T Consensus 318 ~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 318 QHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 888888888888888753 223333333322 34456666 677777776653
No 218
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.87 E-value=4.5 Score=40.06 Aligned_cols=167 Identities=11% Similarity=0.069 Sum_probs=91.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037477 412 SQVIFGLCKAGRFEDACNVLDEMEENG---CIPDIKTWTILIQGHCA---ANEVDRALLCFAKMMEKNYDADADLLDVLI 485 (639)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~t~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 485 (639)
..++-+|....+++...++.+.|...- +.-....--...-++.+ .|+.++|++++..+....-.++..+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 455667999999999999999998741 11122222233445556 899999999999977766678888888776
Q ss_pred HHHHc---------CCChhHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcC-CHHHHHHHH----HHHHhCCCCC-
Q 037477 486 NGFLS---------QKRVNGAYKLLVEMIEKVRLRPWQA---TFKTLIEKLLGAR-RLEEAMNLL----RLMKKQNYPP- 547 (639)
Q Consensus 486 ~~~~~---------~g~~~~A~~~~~~m~~~~~~~p~~~---~~~~li~~~~~~g-~~~~A~~~~----~~m~~~~~~p- 547 (639)
..|-. ....++|...|.+-- .+.|+.. -+..|+....... .-.+..++- ....+.|...
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 65532 123556666666543 3345422 1222222221110 111222222 1122233221
Q ss_pred -----ChHhHHHHHhhcCCHHHHHHHHHHhhcCCCCCHH
Q 037477 548 -----FPEPFVQYISKFGTVEDASEFLKALSVKEYPSSA 581 (639)
Q Consensus 548 -----~~~~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~ 581 (639)
+..|+..+..-.|+.+.|.+..++|....+|.++
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 1223333334556777777777777766655554
No 219
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.81 E-value=2 Score=37.02 Aligned_cols=31 Identities=3% Similarity=0.138 Sum_probs=17.7
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 037477 289 VEEMKKEGYEMDIDTYIKISRQFQKFRMMED 319 (639)
Q Consensus 289 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 319 (639)
++.+.+.+++|+...|..++..+.+.|++..
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3444455566666666666666666665444
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.80 E-value=0.1 Score=38.71 Aligned_cols=60 Identities=17% Similarity=0.158 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCC-HHHHHHHHHHHHcCCChhHHHHHHHHH
Q 037477 445 TWTILIQGHCAANEVDRALLCFAKMMEK----NY-DAD-ADLLDVLINGFLSQKRVNGAYKLLVEM 504 (639)
Q Consensus 445 t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m 504 (639)
+|+.+...|...|++++|+..|++.++. |- .|+ ..++..+..+|...|++++|++++++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444555555555555555555544431 10 011 233444555555555555555555544
No 221
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.78 E-value=1.5 Score=45.55 Aligned_cols=159 Identities=19% Similarity=0.140 Sum_probs=98.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCH-----HHHHHHHHHHH----cCCChhHHHHHHHHHHHhCCCCCCHH
Q 037477 446 WTILIQGHCAANEVDRALLCFAKMMEK-NYDADA-----DLLDVLINGFL----SQKRVNGAYKLLVEMIEKVRLRPWQA 515 (639)
Q Consensus 446 ~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~-----~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~~p~~~ 515 (639)
+..++....-.||-+.+++.+.+..+. ++.... -.|..++..++ .....+.|.++++.+.++ -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 344555555556666666666555442 222111 12333333332 245678899999998876 46766
Q ss_pred HHHHHH-HHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHH------H--hhcCCHHHHHHHHHHhhcCCCCCHHHHHHH
Q 037477 516 TFKTLI-EKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQY------I--SKFGTVEDASEFLKALSVKEYPSSAAYLQV 586 (639)
Q Consensus 516 ~~~~li-~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l------l--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 586 (639)
.|...- +.+...|++++|++.|++.... ......+..+ + ...+++++|...|..+.+....+...|..+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~--q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~ 345 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIES--QSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYL 345 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccc--hhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHH
Confidence 555443 4556689999999999976642 1222222222 1 356899999999999998877777777765
Q ss_pred HHHH-HhcCCH-------HHHHHHHhhCCcc
Q 037477 587 FESF-FNEGRH-------YEAKDLLYKCPHH 609 (639)
Q Consensus 587 ~~~~-~~~g~~-------~~A~~~~~~m~~~ 609 (639)
..++ ...|+. ++|.+++++.|.-
T Consensus 346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 346 AAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 5444 467777 8899999887554
No 222
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.77 E-value=3.3 Score=38.06 Aligned_cols=130 Identities=13% Similarity=0.053 Sum_probs=78.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-----H
Q 037477 412 SQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLI-----N 486 (639)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li-----~ 486 (639)
+.++..+...|.+.-....+++.++.....++.....+.+.-.+.|+.+.|...|++..+..-..|..+++.++ .
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 44555555667777777777777776655567777777777777788888877777666543344444444333 2
Q ss_pred HHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 037477 487 GFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQ 543 (639)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 543 (639)
.|.-++++.+|...|+++....+-.|-..---+++. .-.|+..+|++.++.|...
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcl--lYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCL--LYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHH--HHHHHHHHHHHHHHHHhcc
Confidence 345566777777777777655332222111123332 2346777777777777763
No 223
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.66 E-value=7.2 Score=41.48 Aligned_cols=293 Identities=15% Similarity=0.137 Sum_probs=156.2
Q ss_pred HCCCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCC-CchhHHHHHHHHHHhc
Q 037477 294 KEGYEMDIDTYIK-----ISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINN-PDLGLVFRVANKYESL 367 (639)
Q Consensus 294 ~~g~~p~~~~~~~-----li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~~~~~~~~~~~~~~ 367 (639)
.-|++.+..-|.. +|+-+...+.+..|+++-..+...-.+- ...|......+.+... .|.+.+..+-.++...
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 3477777766654 5777788889999999888886432222 5566666666655533 3333333333333332
Q ss_pred CCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCC----CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----
Q 037477 368 GNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFE----PDNITYSQVIFGLCKAGRFEDACNVLDEMEENG----- 438 (639)
Q Consensus 368 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----- 438 (639)
. .....|..+.+-....|+.+.|..+++.=...+.. .+..-+...+.-+...|+.+-...++-.|.+.-
T Consensus 504 -~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l 581 (829)
T KOG2280|consen 504 -L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSL 581 (829)
T ss_pred -C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence 2 34456777777777788888887776542221100 000112233333344444443333333322110
Q ss_pred -----CCC-----------------------------------------------CHHHHHHHHHHHHHcCCHH---HH-
Q 037477 439 -----CIP-----------------------------------------------DIKTWTILIQGHCAANEVD---RA- 462 (639)
Q Consensus 439 -----~~p-----------------------------------------------~~~t~~~li~~~~~~g~~~---~a- 462 (639)
..| -..........|.+..... +|
T Consensus 582 ~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ 661 (829)
T KOG2280|consen 582 FMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKAL 661 (829)
T ss_pred HHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHH
Confidence 000 0011111222222222211 11
Q ss_pred ------HHHHHHHHH-cCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037477 463 ------LLCFAKMME-KNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMN 535 (639)
Q Consensus 463 ------~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 535 (639)
+.+.+.+.. .|..-..-+.+--+.-+...|...+|.++-.+. . .||-..|..=+.+++..+++++-++
T Consensus 662 ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~F----k-ipdKr~~wLk~~aLa~~~kweeLek 736 (829)
T KOG2280|consen 662 EDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDF----K-IPDKRLWWLKLTALADIKKWEELEK 736 (829)
T ss_pred HHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhc----C-CcchhhHHHHHHHHHhhhhHHHHHH
Confidence 111111111 121222223334444555667777776665543 2 4677777777888888888888777
Q ss_pred HHHHHHhCCCCCChHhHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 037477 536 LLRLMKKQNYPPFPEPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYK 605 (639)
Q Consensus 536 ~~~~m~~~~~~p~~~~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 605 (639)
+-+.+.. +.....|...+.+.|+.++|.+++.+.... . -.+.+|.+.|++.+|.++--+
T Consensus 737 fAkskks---PIGy~PFVe~c~~~~n~~EA~KYiprv~~l----~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 737 FAKSKKS---PIGYLPFVEACLKQGNKDEAKKYIPRVGGL----Q----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHhccCC---CCCchhHHHHHHhcccHHHHhhhhhccCCh----H----HHHHHHHHhccHHHHHHHHHH
Confidence 6666552 333445777888889999999887766543 1 467788888888888776544
No 224
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.38 E-value=0.045 Score=32.88 Aligned_cols=33 Identities=21% Similarity=0.189 Sum_probs=29.1
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037477 569 LKALSVKEYPSSAAYLQVFESFFNEGRHYEAKD 601 (639)
Q Consensus 569 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 601 (639)
|++..+..|.++.+|..+...|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 566677789999999999999999999999863
No 225
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.31 E-value=4.8 Score=37.92 Aligned_cols=144 Identities=17% Similarity=0.074 Sum_probs=74.2
Q ss_pred HHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 037477 382 ALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDR 461 (639)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~ 461 (639)
.....|++.+|..+|+...... +-+...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3456677777777777766553 223344555667777777777777777776543222222222222333333333333
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 037477 462 ALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGAR 528 (639)
Q Consensus 462 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 528 (639)
..++-.+.-.. +-|...-..+...+...|+.++|.+.+-.+.++..-.-|...-..+++.+.-.|
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 33333333221 224455555666666677777766665555544222223334445555554444
No 226
>PRK15331 chaperone protein SicA; Provisional
Probab=94.30 E-value=0.41 Score=40.78 Aligned_cols=87 Identities=17% Similarity=0.095 Sum_probs=48.7
Q ss_pred HHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 037477 383 LTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRA 462 (639)
Q Consensus 383 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a 462 (639)
+-..|++++|..+|.-+...+ .-+..-|..|..+|-..+++++|...|......+.. |...+-....+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence 345566666666666666543 223444555555555666666666666655443321 333334455566666666666
Q ss_pred HHHHHHHHH
Q 037477 463 LLCFAKMME 471 (639)
Q Consensus 463 ~~~~~~m~~ 471 (639)
...|...++
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 666665555
No 227
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.14 E-value=5.7 Score=38.16 Aligned_cols=172 Identities=13% Similarity=0.103 Sum_probs=93.1
Q ss_pred HcCCChhHHHHHHHHHHHCC--CCCCH------HHHHHHHHHHHhcC-CHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHh
Q 037477 277 ARHESVRDFWNVVEEMKKEG--YEMDI------DTYIKISRQFQKFR-MMEDAVKLFEFMMDGPYKPSVQDCSLLLRSIS 347 (639)
Q Consensus 277 ~~~g~~~~a~~~~~~m~~~g--~~p~~------~~~~~li~~~~~~g-~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~ 347 (639)
.+.|+++.|..++.+..... ..|+. ..|+.-... .+.+ ++++|...+++..+. +.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l-~~~~~~~~~a~~wL~~a~~~---------------l~ 67 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSL-LSKKDKYEEAVKWLQRAYDI---------------LE 67 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHH-HHcCCChHHHHHHHHHHHHH---------------HH
Confidence 46788888888888776542 22321 223333333 3444 788887777765431 00
Q ss_pred hcCCCchhHHHHHHHHHHhcCCC---CChhhHHHHHHHHHccCChh---HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 037477 348 SINNPDLGLVFRVANKYESLGNS---LSKSVYDGIHRALTKLGRFD---EAEKMMKAMKNAGFEPDNITYSQVIFGLCKA 421 (639)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 421 (639)
.. ..+...... .-..++..++.+|...+..+ +|.++++.+.... .-.+..+-.-+..+.+.
T Consensus 68 ~~------------~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~ 134 (278)
T PF08631_consen 68 KP------------GKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKS 134 (278)
T ss_pred hh------------hhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhcc
Confidence 00 000000000 01134566777887777654 4566666665442 22244555566777778
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHcCCCCCHH
Q 037477 422 GRFEDACNVLDEMEENGCIPDIKTWTILIQGH---CAANEVDRALLCFAKMMEKNYDADAD 479 (639)
Q Consensus 422 g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~---~~~g~~~~a~~~~~~m~~~g~~~~~~ 479 (639)
++.+++.+++.+|...-.. ....+..++..+ ... ....|...+..++...+.|...
T Consensus 135 ~~~~~~~~~L~~mi~~~~~-~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 135 FDEEEYEEILMRMIRSVDH-SESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred CChhHHHHHHHHHHHhccc-ccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChh
Confidence 8899999999998875321 234455555544 332 3345666666666655555443
No 228
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.06 E-value=6 Score=38.16 Aligned_cols=49 Identities=12% Similarity=0.320 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHhhcC
Q 037477 282 VRDFWNVVEEMKKEGYEMDIDTYIKISRQFQK--FR----MMEDAVKLFEFMMDG 330 (639)
Q Consensus 282 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g----~~~~a~~l~~~m~~~ 330 (639)
+++...+++.|.+.|..-+..+|-+....... .. ...+|..+|+.|++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 45667778888888887777776653333322 22 245677788888765
No 229
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.04 E-value=11 Score=40.89 Aligned_cols=44 Identities=14% Similarity=0.148 Sum_probs=27.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCccccCChhHHHhhh
Q 037477 577 YPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHHIRQDSKISLLFG 621 (639)
Q Consensus 577 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~~ 621 (639)
.|....+.-+.+++-+. ..++-.+.+.+.....+.-..++..++
T Consensus 879 ~~e~~~~m~l~~s~~q~-~~~~~~~f~~~~e~s~D~fsvite~fg 922 (933)
T KOG2114|consen 879 LPELRGVMDLKRSQEQK-KTDDFDEFFHQSEGSKDSFSVITEYFG 922 (933)
T ss_pred chhhhhhHHHHHHHHHh-hhhHHHHHHHhhcccCCcceeehhhcc
Confidence 35666778888888776 667777777776533333334444444
No 230
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.91 E-value=6.9 Score=38.28 Aligned_cols=58 Identities=21% Similarity=0.185 Sum_probs=29.7
Q ss_pred cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHhhCCccccCChhHH
Q 037477 559 FGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNE-GRHYEAKDLLYKCPHHIRQDSKIS 617 (639)
Q Consensus 559 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~ 617 (639)
.|++..|..--+.... ..|....|..|.+.-... |+-.++...+-+-...+..+.|..
T Consensus 342 a~e~~~ARa~Aeaa~r-~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW~a 400 (531)
T COG3898 342 AGEFSAARAKAEAAAR-EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAWTA 400 (531)
T ss_pred ccchHHHHHHHHHHhh-hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCcccc
Confidence 3555555444333322 234555555555555443 666666666666555555555543
No 231
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.90 E-value=14 Score=41.75 Aligned_cols=78 Identities=19% Similarity=0.173 Sum_probs=37.6
Q ss_pred HHHHHcCCChhHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHhhcCCH
Q 037477 485 INGFLSQKRVNGAYKLLVEMIEKVRLRPWQ--ATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYISKFGTV 562 (639)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~g~~ 562 (639)
+.+|..+|++.+|+.+-.++... -+. .+-..|+.-+...++.-+|-++..+.. -|..--..++++...+
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~----~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~-----sd~~~av~ll~ka~~~ 1042 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEG----KDELVILAEELVSRLVEQRKHYEAAKILLEYL-----SDPEEAVALLCKAKEW 1042 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCC----HHHHHHHHHHHHHHHHHcccchhHHHHHHHHh-----cCHHHHHHHHhhHhHH
Confidence 44555555555555555544221 111 112345555555666666655555543 2233344455555556
Q ss_pred HHHHHHHHH
Q 037477 563 EDASEFLKA 571 (639)
Q Consensus 563 ~~a~~~~~~ 571 (639)
++|......
T Consensus 1043 ~eAlrva~~ 1051 (1265)
T KOG1920|consen 1043 EEALRVASK 1051 (1265)
T ss_pred HHHHHHHHh
Confidence 666555433
No 232
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.76 E-value=3.3 Score=44.48 Aligned_cols=177 Identities=19% Similarity=0.209 Sum_probs=124.4
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037477 376 YDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGL----CKAGRFEDACNVLDEMEENGCIPDIKTWTILIQ 451 (639)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~ 451 (639)
...-++.+.+...++-|..+-+.- ..|..+...++..| .+.|++++|..-|-+-... +.| ..+|.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~-----~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQ-----HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHH
Confidence 455777888888888888776543 33444555555544 4689999999877765532 122 33566
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 037477 452 GHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLE 531 (639)
Q Consensus 452 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 531 (639)
-|........-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+... . |. ...-....+..|.+.+-.+
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~-g~--~~fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-K-GE--WFFDVETALEILRKSNYLD 480 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-C-cc--eeeeHHHHHHHHHHhChHH
Confidence 777777788888889999998864 56666789999999999998888776543 2 22 1222456677788888888
Q ss_pred HHHHHHHHHHhCCCCCChHhHHHHHhhcCCHHHHHHHHHHhh
Q 037477 532 EAMNLLRLMKKQNYPPFPEPFVQYISKFGTVEDASEFLKALS 573 (639)
Q Consensus 532 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~g~~~~a~~~~~~~~ 573 (639)
+|.-+-.+... ....+..++...|++++|.++++.+.
T Consensus 481 ~a~~LA~k~~~-----he~vl~ille~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 481 EAELLATKFKK-----HEWVLDILLEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHHhcc-----CHHHHHHHHHHhcCHHHHHHHHhcCC
Confidence 88877665542 34556677788899999999987764
No 233
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.69 E-value=2.1 Score=43.94 Aligned_cols=155 Identities=15% Similarity=0.128 Sum_probs=79.8
Q ss_pred HHcCCChhHHHHHHH--HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCc
Q 037477 276 LARHESVRDFWNVVE--EMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPD 353 (639)
Q Consensus 276 ~~~~g~~~~a~~~~~--~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 353 (639)
..-.|+++++.++.+ ++.. .+ +....+.++..+-+.|..+.|+++-.+-..
T Consensus 271 av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------------------ 323 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPDH------------------------ 323 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------------------
T ss_pred HHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------------------
Confidence 344567777666654 1111 11 244567777777777877777776543211
Q ss_pred hhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 037477 354 LGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDE 433 (639)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 433 (639)
-.....+.|+++.|.++.++. .+...|..|.+...+.|+++-|.+.|.+
T Consensus 324 -------------------------rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 324 -------------------------RFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp -------------------------HHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred -------------------------HhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 112234556666666654432 3555677777777777777777766665
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 037477 434 MEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVE 503 (639)
Q Consensus 434 m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 503 (639)
..+ |..|+-.|.-.|+.+.-.++.+.....|- ++....++.-.|++++..+++.+
T Consensus 373 ~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 373 AKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp CT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred hcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 443 44555566666666666666655555541 34444444455666665555543
No 234
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.67 E-value=7 Score=37.55 Aligned_cols=218 Identities=17% Similarity=0.199 Sum_probs=125.7
Q ss_pred HccCChhHHHHHHHHHHHCC--CCCCH------HhHHHHHHHHHhcCCHHHHHHHHHHHHHC--------CCCCCH----
Q 037477 384 TKLGRFDEAEKMMKAMKNAG--FEPDN------ITYSQVIFGLCKAGRFEDACNVLDEMEEN--------GCIPDI---- 443 (639)
Q Consensus 384 ~~~g~~~~A~~~~~~m~~~g--~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~p~~---- 443 (639)
.+.|+.+.|..++.+..... ..|+. ..|+.-...+.+..+++.|...+++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 45688888888888776532 22322 23444444444443888777776664322 222333
Q ss_pred -HHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHH
Q 037477 444 -KTWTILIQGHCAANEVD---RALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKT 519 (639)
Q Consensus 444 -~t~~~li~~~~~~g~~~---~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ 519 (639)
.+...++.+|...+..+ +|..+++.+.... .-...++..-+..+.+.++.+.+.+.+.+|....+ -....+..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~--~~e~~~~~ 160 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD--HSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc--cccchHHH
Confidence 45677788888877655 4555666664432 22245555566777778999999999999998633 12234444
Q ss_pred HHHHH---HhcCCHHHHHHHHHHHHhCCCCCChHhHH-HH------H-hhc------CCHHHHHHHHHHhhcC--CCCCH
Q 037477 520 LIEKL---LGARRLEEAMNLLRLMKKQNYPPFPEPFV-QY------I-SKF------GTVEDASEFLKALSVK--EYPSS 580 (639)
Q Consensus 520 li~~~---~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~l------l-~~~------g~~~~a~~~~~~~~~~--~~~~~ 580 (639)
++..+ .. .....|...++++....+.|....+. .. + ... .+++....+++.+.+. .+.+.
T Consensus 161 ~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~ 239 (278)
T PF08631_consen 161 ILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSA 239 (278)
T ss_pred HHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCH
Confidence 44433 43 33467778888777655655543121 11 1 121 1255555566644433 34444
Q ss_pred HHHHHH-------HHHHHhcCCHHHHHHHHhh
Q 037477 581 AAYLQV-------FESFFNEGRHYEAKDLLYK 605 (639)
Q Consensus 581 ~~~~~l-------~~~~~~~g~~~~A~~~~~~ 605 (639)
.+-.++ +....+.++|++|.+.++-
T Consensus 240 ~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 240 EAASAIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 443333 3445678999999998874
No 235
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.42 E-value=8.7 Score=37.92 Aligned_cols=155 Identities=15% Similarity=0.111 Sum_probs=102.0
Q ss_pred HHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH--HhcCCHHHHHHHHHHHHHCCCCCCHHHH------------
Q 037477 381 RALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGL--CKAGRFEDACNVLDEMEENGCIPDIKTW------------ 446 (639)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~~~p~~~t~------------ 446 (639)
.++.-.|+.++|.++-....+.. ....+...+++. --.++.+.|...|++....+ |+-..-
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHH
Confidence 46677899999988877776543 112233444433 34678888888888877654 433221
Q ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 037477 447 -TILIQGHCAANEVDRALLCFAKMME---KNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW-QATFKTLI 521 (639)
Q Consensus 447 -~~li~~~~~~g~~~~a~~~~~~m~~---~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li 521 (639)
..=..-..+.|.+..|.+.+.+.+. .+..++...|........+.|+..+|+.--++..+- .|. +..|..-.
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i---D~syikall~ra 328 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI---DSSYIKALLRRA 328 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc---CHHHHHHHHHHH
Confidence 1122334578999999999999887 345677777877777888999999998877766532 222 11222223
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 037477 522 EKLLGARRLEEAMNLLRLMKKQ 543 (639)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~m~~~ 543 (639)
.++...++|++|.+-++...+.
T Consensus 329 ~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 329 NCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4455578889999988887664
No 236
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.32 E-value=1.3 Score=41.03 Aligned_cols=96 Identities=16% Similarity=0.145 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHH
Q 037477 411 YSQVIFGLCKAGRFEDACNVLDEMEENGCI--PDIKTWTILIQGHCAANEVDRALLCFAKMMEKN-YDA-DADLLDVLIN 486 (639)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~-~~~~~~~li~ 486 (639)
|+.-+..| +.|++..|...|....+.... -....+-.|..++...|++++|..+|..+.+.- -.| -...+--|..
T Consensus 145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 44444333 444555555555555544311 011223335555555555555555555555421 011 1133334444
Q ss_pred HHHcCCChhHHHHHHHHHHHh
Q 037477 487 GFLSQKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~~~ 507 (639)
+..+.|+.++|..+|+++.++
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 445555555555555555554
No 237
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.17 E-value=4 Score=33.25 Aligned_cols=67 Identities=16% Similarity=0.241 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC
Q 037477 265 NTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPY 332 (639)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~ 332 (639)
+....+..++.+.+.|+-|+-.+++.++.+.+ .+++...-.+..+|.+.|+..++.+++.+.-+.|+
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 45566777888999999999999999987643 77888899999999999999999999999888775
No 238
>PRK15331 chaperone protein SicA; Provisional
Probab=93.15 E-value=1.3 Score=37.76 Aligned_cols=86 Identities=12% Similarity=0.007 Sum_probs=54.0
Q ss_pred HHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CChHhHHHH--HhhcCCHH
Q 037477 487 GFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYP-PFPEPFVQY--ISKFGTVE 563 (639)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l--l~~~g~~~ 563 (639)
-+-..|++++|..+|.-+.--... +..-|..|...+-..|++++|+..|......+.. |.+ .|... +...|+.+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~--n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p-~f~agqC~l~l~~~~ 122 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFY--NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP-VFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc-cchHHHHHHHhCCHH
Confidence 345678888888888877653222 2334555556666678888888888776553321 222 23222 24668888
Q ss_pred HHHHHHHHhhcC
Q 037477 564 DASEFLKALSVK 575 (639)
Q Consensus 564 ~a~~~~~~~~~~ 575 (639)
.|+..|....+.
T Consensus 123 ~A~~~f~~a~~~ 134 (165)
T PRK15331 123 KARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHhC
Confidence 888888877764
No 239
>PRK09687 putative lyase; Provisional
Probab=93.10 E-value=8.5 Score=36.89 Aligned_cols=239 Identities=13% Similarity=0.086 Sum_probs=111.6
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHhhcCCCCCCHHH
Q 037477 263 KHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMM----EDAVKLFEFMMDGPYKPSVQD 338 (639)
Q Consensus 263 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~----~~a~~l~~~m~~~g~~p~~~~ 338 (639)
.+|....-..+..+...|. +++...+..+... +|...-...+.++++.|+. +++..++..+... .++..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 4466666666677777665 3333334444333 3566666666777777753 4566666665332 345555
Q ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 037477 339 CSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGL 418 (639)
Q Consensus 339 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 418 (639)
-...+.++...+........+....+...-..++..+-...+.++++.|+. ++...+-.+.+ .+|...-...+.++
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~---d~~~~VR~~A~~aL 183 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDE-AAIPLLINLLK---DPNGDVRNWAAFAL 183 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH-HHHHHHHHHhc---CCCHHHHHHHHHHH
Confidence 555555554433222111111122222222222334444555555555553 34444444333 23333344444444
Q ss_pred HhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHH
Q 037477 419 CKAG-RFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGA 497 (639)
Q Consensus 419 ~~~g-~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 497 (639)
.+.+ +-..+...+..+.. .++..+-...+.++.+.|+. .|...+-...+.+. .....+.++...|.. +|
T Consensus 184 g~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a 253 (280)
T PRK09687 184 NSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TL 253 (280)
T ss_pred hcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hH
Confidence 4432 13344444444443 24555555666666666653 34444444443321 123455555665653 45
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 037477 498 YKLLVEMIEKVRLRPWQATFKTLIEKL 524 (639)
Q Consensus 498 ~~~~~~m~~~~~~~p~~~~~~~li~~~ 524 (639)
...+..+.+. .||...-...+.+|
T Consensus 254 ~p~L~~l~~~---~~d~~v~~~a~~a~ 277 (280)
T PRK09687 254 LPVLDTLLYK---FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHHHHhh---CCChhHHHHHHHHH
Confidence 5555555543 23444444444433
No 240
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=93.10 E-value=7.9 Score=36.50 Aligned_cols=116 Identities=18% Similarity=0.189 Sum_probs=57.1
Q ss_pred hcCCHHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHh-cCCCCChhhHHHHHHHHHccCChh
Q 037477 313 KFRMMEDAVKLFEFMMD-GPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYES-LGNSLSKSVYDGIHRALTKLGRFD 390 (639)
Q Consensus 313 ~~g~~~~a~~l~~~m~~-~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~ 390 (639)
++..+.+|+++|+.... ..+--|..+...+++......+.......++.+.+.. .+..++..+...++..++..+++.
T Consensus 140 ~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~ 219 (292)
T PF13929_consen 140 RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWN 219 (292)
T ss_pred hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHH
Confidence 34456777888874332 2355566666666666655332233333333333322 223444444555555555555555
Q ss_pred HHHHHHHHHHHC-CCCCCHHhHHHHHHHHHhcCCHHHHH
Q 037477 391 EAEKMMKAMKNA-GFEPDNITYSQVIFGLCKAGRFEDAC 428 (639)
Q Consensus 391 ~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~ 428 (639)
+-.++++.-... +...|...|..+|+.....|+..-..
T Consensus 220 kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ 258 (292)
T PF13929_consen 220 KLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMR 258 (292)
T ss_pred HHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHH
Confidence 555555544333 33334445555555555555544333
No 241
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.98 E-value=4 Score=35.27 Aligned_cols=105 Identities=16% Similarity=0.162 Sum_probs=51.3
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 463 LLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 463 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
.++++.+.+.|+.|+...+..+++.+.+.|++..-..++. +++-+|.....+.+-.+.. ....+.++=-.|.+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq-----~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ-----YHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh-----hcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHH
Confidence 3445555556666666677777777777666554444332 2555555444444433322 22222222222222
Q ss_pred CCCCCChHhHHHHHhhcCCHHHHHHHHHHhhcC
Q 037477 543 QNYPPFPEPFVQYISKFGTVEDASEFLKALSVK 575 (639)
Q Consensus 543 ~~~~p~~~~~~~ll~~~g~~~~a~~~~~~~~~~ 575 (639)
+ +.........++-..|++-+|.++.++....
T Consensus 87 R-L~~~~~~iievLL~~g~vl~ALr~ar~~~~~ 118 (167)
T PF07035_consen 87 R-LGTAYEEIIEVLLSKGQVLEALRYARQYHKV 118 (167)
T ss_pred H-hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 1 1112233444555666666666666655333
No 242
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.96 E-value=1.5 Score=40.66 Aligned_cols=102 Identities=16% Similarity=0.154 Sum_probs=51.2
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CC---CChH-hHH
Q 037477 480 LLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRP-WQATFKTLIEKLLGARRLEEAMNLLRLMKKQN-YP---PFPE-PFV 553 (639)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~---p~~~-~~~ 553 (639)
.|+.-+..| +.|++.+|...|....+.+.-.+ ....+--|.+++...|++++|..+|..+.+.- -. ||.. -+.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 455555443 34556666666666666532110 12244445566666666666666666665421 11 1111 111
Q ss_pred HHHhhcCCHHHHHHHHHHhhcCCCCCHHH
Q 037477 554 QYISKFGTVEDASEFLKALSVKEYPSSAA 582 (639)
Q Consensus 554 ~ll~~~g~~~~a~~~~~~~~~~~~~~~~~ 582 (639)
..+...|+.++|...|+++.+..|.+..+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 12245566666666666666665554443
No 243
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.87 E-value=4.9 Score=38.78 Aligned_cols=179 Identities=12% Similarity=0.025 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCC---HHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCC----CCHHH
Q 037477 445 TWTILIQGHCAANEVDRALLCFAKMME-KNYDAD---ADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLR----PWQAT 516 (639)
Q Consensus 445 t~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----p~~~~ 516 (639)
.|..+.+++.+..++.+++.+-+.-.. .|..|. .....++-.++...+.++++++.|+...+-..-. .....
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 444455555555555555554433332 122221 1222334455555666777777777655421111 12346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh--CCCC-CCh-HhHH--------HHHhhcCCHHHHHHHHHHhhcC--CCCCHH-
Q 037477 517 FKTLIEKLLGARRLEEAMNLLRLMKK--QNYP-PFP-EPFV--------QYISKFGTVEDASEFLKALSVK--EYPSSA- 581 (639)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~-p~~-~~~~--------~ll~~~g~~~~a~~~~~~~~~~--~~~~~~- 581 (639)
|-.+-..|.+..++++|.-+..+..+ ..+. .|+ .-|. ..+...|.+.+|.+..++..+. ..-|..
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 66777777777787777776665543 1122 111 1121 1224667777777777766544 222333
Q ss_pred ---HHHHHHHHHHhcCCHHHHHHHHhh----CCccccCChhHHHhhhcc
Q 037477 582 ---AYLQVFESFFNEGRHYEAKDLLYK----CPHHIRQDSKISLLFGSA 623 (639)
Q Consensus 582 ---~~~~l~~~~~~~g~~~~A~~~~~~----m~~~~~~~~~~~~l~~~~ 623 (639)
...++.+.|...|+.|.|+.-++. |..-+++...+..+.+.+
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~A 293 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAA 293 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 344677888888888888776665 444445544555444433
No 244
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.86 E-value=5.1 Score=33.67 Aligned_cols=44 Identities=9% Similarity=0.215 Sum_probs=23.4
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 037477 270 NGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKF 314 (639)
Q Consensus 270 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 314 (639)
..++..+...+........++.+...+ ..+...++.++..|++.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 345555555555555555555555554 24455555555555543
No 245
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.85 E-value=2.4 Score=41.66 Aligned_cols=91 Identities=13% Similarity=0.033 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhH--HHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 037477 516 TFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPF--VQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNE 593 (639)
Q Consensus 516 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~--~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 593 (639)
+++.+.-+|.+.+++.+|++.-++.++.+-...-.-| ...+...|+++.|+..|+++.+..|.|..+-..|+..--+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 6677777888999999999988888774322111223 33445779999999999999999998988888888877776
Q ss_pred CCHHHH-HHHHhhC
Q 037477 594 GRHYEA-KDLLYKC 606 (639)
Q Consensus 594 g~~~~A-~~~~~~m 606 (639)
.++++. .++|..|
T Consensus 339 ~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 339 REYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHHH
Confidence 665554 6777776
No 246
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.84 E-value=9.6 Score=36.79 Aligned_cols=153 Identities=16% Similarity=0.220 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHhc--cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---cCchhhHHHHHHHHHHHhhhccc----
Q 037477 129 STVYSLMLRNLVN--KDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKK---AKKASDLAALNQFHDGMVKEIAM---- 199 (639)
Q Consensus 129 ~~~~~~li~~~~~--~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---- 199 (639)
..++.+++..... ...+++...+++.|++.|+.-+..+|.+.+-.... ....+.+.....+|+.|.+..+.
T Consensus 60 ~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~ 139 (297)
T PF13170_consen 60 RFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSP 139 (297)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCc
Confidence 4455555554444 22355688899999999999888888775555444 22234556777888888876432
Q ss_pred -hhHHHHHHHHHhcCCchHHHHHHHhhccCcCCHHHHHHHHHHhccChHHHHHHHHHHhccCCCCC-CH-HHHHHHHHHH
Q 037477 200 -DNVAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKH-NT-ITYNGILRVL 276 (639)
Q Consensus 200 -~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p-~~-~~~~~li~~~ 276 (639)
+.++..++.. ...+.+.. .+....+|+.+. ..|+.. |. .....++..+
T Consensus 140 ~D~~~a~lLA~--~~~~~e~l--------------------------~~~~E~~Y~~L~-~~~f~kgn~LQ~LS~iLaL~ 190 (297)
T PF13170_consen 140 EDYPFAALLAM--TSEDVEEL--------------------------AERMEQCYQKLA-DAGFKKGNDLQFLSHILALS 190 (297)
T ss_pred cchhHHHHHhc--ccccHHHH--------------------------HHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHhc
Confidence 1133333222 11111111 234555666664 345555 22 3344444333
Q ss_pred HcCCC--hhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037477 277 ARHES--VRDFWNVVEEMKKEGYEMDIDTYIKISRQ 310 (639)
Q Consensus 277 ~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 310 (639)
..... +..+.++++.+.+.|+++....|..+.-.
T Consensus 191 ~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 191 EGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred cccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 32222 34778888888888888877777665433
No 247
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=92.82 E-value=9.4 Score=38.57 Aligned_cols=64 Identities=13% Similarity=0.094 Sum_probs=44.7
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037477 372 SKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDN----ITYSQVIFGLCKAGRFEDACNVLDEMEEN 437 (639)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 437 (639)
+...++.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|.+.|+.++|+..+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4456777777777777777777777776665 3442 34677777777777777777777777764
No 248
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.70 E-value=12 Score=37.46 Aligned_cols=128 Identities=13% Similarity=0.137 Sum_probs=63.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHH
Q 037477 410 TYSQVIFGLCKAGRFEDACNVLDEMEENG-CIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADL-LDVLING 487 (639)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~-~~~li~~ 487 (639)
.|...|+...+..-++.|..+|-+..+.| ..+++..++++|..++. |+..-|..+|+.-+.. -||... .+-.+.-
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~f 475 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLF 475 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHH
Confidence 34445555555555556666666665555 34555555555555443 3444455555543332 122222 2333444
Q ss_pred HHcCCChhHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 488 FLSQKRVNGAYKLLVEMIEKVRLRPW--QATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
+...++-+.|..+|+...++ +..+ ...|-.||+-=..-|++..+..+-++|.+
T Consensus 476 Li~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 45555555566666543332 1111 33555555555555555555555555554
No 249
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=92.46 E-value=1.9 Score=43.31 Aligned_cols=66 Identities=17% Similarity=0.173 Sum_probs=53.3
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 037477 405 EPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDI----KTWTILIQGHCAANEVDRALLCFAKMMEK 472 (639)
Q Consensus 405 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 472 (639)
+.+...|+.+..+|.+.|++++|+..|++..+.. |+. .+|..+..+|...|+.++|.+.+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4567788888888889999999999998887754 443 35888888888999999998888888875
No 250
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.19 E-value=6.1 Score=32.98 Aligned_cols=59 Identities=10% Similarity=0.037 Sum_probs=26.1
Q ss_pred HHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCC
Q 037477 454 CAANEVDRALLCFAKMMEKNY--DADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRP 512 (639)
Q Consensus 454 ~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 512 (639)
.+.|++++|.+.|+.+...=. +-....--.|+.+|.+.|++++|...+++..+.+...|
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 344555555555555444210 11122333444455555555555555555554433333
No 251
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=92.11 E-value=18 Score=38.28 Aligned_cols=29 Identities=17% Similarity=0.186 Sum_probs=20.2
Q ss_pred CChHHHHHHHHHHhccCChHHHHHHHHHH
Q 037477 127 PSSTVYSLMLRNLVNKDSLKQFWVTLRRM 155 (639)
Q Consensus 127 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m 155 (639)
|.+..|..+.......-.++-|...|-+.
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc 718 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRC 718 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhh
Confidence 77888988877766666666666665443
No 252
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.02 E-value=0.26 Score=31.70 Aligned_cols=35 Identities=23% Similarity=0.267 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCccccCChhH
Q 037477 582 AYLQVFESFFNEGRHYEAKDLLYKCPHHIRQDSKI 616 (639)
Q Consensus 582 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 616 (639)
+|..+..+|.+.|++++|.+++++.......++..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a 37 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEA 37 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 44555555555555555555555543333333333
No 253
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.76 E-value=8.7 Score=37.94 Aligned_cols=80 Identities=11% Similarity=0.025 Sum_probs=49.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChH-hHHHHH-------hhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCH
Q 037477 525 LGARRLEEAMNLLRLMKKQNYPPFPE-PFVQYI-------SKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRH 596 (639)
Q Consensus 525 ~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll-------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 596 (639)
.+.|++.+|.+.+.+.+. +.|+.. +...++ .+.|+.++|+.-.+...+..+.-...|..-..++...++|
T Consensus 260 fk~G~y~~A~E~Yteal~--idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~ 337 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALN--IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKW 337 (486)
T ss_pred hhccchhHHHHHHHHhhc--CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777664 333322 222222 3557777777777776666555555555556666667777
Q ss_pred HHHHHHHhhC
Q 037477 597 YEAKDLLYKC 606 (639)
Q Consensus 597 ~~A~~~~~~m 606 (639)
++|.+-+++.
T Consensus 338 e~AV~d~~~a 347 (486)
T KOG0550|consen 338 EEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHH
Confidence 7777777763
No 254
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.74 E-value=1.9 Score=40.70 Aligned_cols=77 Identities=16% Similarity=0.181 Sum_probs=55.0
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 037477 375 VYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEE-----NGCIPDIKTWTIL 449 (639)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~t~~~l 449 (639)
++..++..+...|+.+.+.+.++++.... +-+...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 35557777777788888888888877665 45667788888888888888888888777654 4677766666555
Q ss_pred HHH
Q 037477 450 IQG 452 (639)
Q Consensus 450 i~~ 452 (639)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
No 255
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.71 E-value=17 Score=37.07 Aligned_cols=179 Identities=12% Similarity=0.065 Sum_probs=124.5
Q ss_pred CChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhhccchhHHHH-
Q 037477 127 PSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAALNQFHDGMVKEIAMDNVAKT- 205 (639)
Q Consensus 127 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 205 (639)
.|-...-++|..++++-...-+..+..+|.+.| -+...|..++..|...|. ..+..+++++++....+.+...
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en~n----~~l~~lWer~ve~dfnDvv~~Re 137 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKENGN----EQLYSLWERLVEYDFNDVVIGRE 137 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhcCc----hhhHHHHHHHHHhcchhHHHHHH
Confidence 455666788999999988899999999999987 477889999999998853 2346777877777777776554
Q ss_pred HHHHHhcCCchHHHHHHHhhccCc----CCHHHHHHHHHHh----ccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Q 037477 206 LVDVVLGSDWDDKIGKKLEDMKIE----LSDNFVLTVLKEL----RIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLA 277 (639)
Q Consensus 206 l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~----~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~ 277 (639)
|...|-+ +..+.+...+.+.--. .....+-.+...+ ..+.+.-+.+...+....|...-.+.+.-+-.-|.
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 4444443 5555555555444211 1122222233222 34566777777777777777777888888889999
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 037477 278 RHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQK 313 (639)
Q Consensus 278 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 313 (639)
...++++|++++..+.+.. .-|...-..++..+..
T Consensus 217 ~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~lRd 251 (711)
T COG1747 217 ENENWTEAIRILKHILEHD-EKDVWARKEIIENLRD 251 (711)
T ss_pred cccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHHHH
Confidence 9999999999999888775 4466666666665544
No 256
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.69 E-value=10 Score=37.48 Aligned_cols=137 Identities=13% Similarity=0.029 Sum_probs=75.1
Q ss_pred HHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCC
Q 037477 309 RQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGR 388 (639)
Q Consensus 309 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 388 (639)
+.|.+.|++..|..-|+..... +-.....+.+....... .-..++..+.-+|.+.++
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~---------------l~~~~~~~~ee~~~~~~--------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSF---------------LEYRRSFDEEEQKKAEA--------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHH---------------hhccccCCHHHHHHHHH--------HHHHHhhHHHHHHHhhhh
Confidence 4578899999999998876542 00000001111111100 011235556667777777
Q ss_pred hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHcCC-HHHHHHHH
Q 037477 389 FDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGH-CAANE-VDRALLCF 466 (639)
Q Consensus 389 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~-~~~g~-~~~a~~~~ 466 (639)
+..|++.-......+ ++|+-..-.-..+|...|+++.|+..|+++++.. |+....+.=+..| -+... .+...++|
T Consensus 273 ~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 273 YKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred HHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777776665 4555555555667777777777777777777643 4444333333322 22222 23335566
Q ss_pred HHHHH
Q 037477 467 AKMME 471 (639)
Q Consensus 467 ~~m~~ 471 (639)
..|..
T Consensus 350 ~~mF~ 354 (397)
T KOG0543|consen 350 ANMFA 354 (397)
T ss_pred HHHhh
Confidence 66654
No 257
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=91.50 E-value=3.4 Score=40.53 Aligned_cols=133 Identities=14% Similarity=0.034 Sum_probs=85.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCC-CCCHH
Q 037477 410 TYSQVIFGLCKAGRFEDACNVLDEME----ENGCI-PDIKTWTILIQGHCAANEVDRALLCFAKMME----KNY-DADAD 479 (639)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~-p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~----~g~-~~~~~ 479 (639)
.|..|-..|--.|+++.|+...+.-. +-|-+ .....+..+..++.-.|+++.|.+.|+.-.. .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 34555555666788888887665422 22211 1234677788888888999999888876543 221 22334
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 480 LLDVLINGFLSQKRVNGAYKLLVEMIEK----VRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
...+|-+.|.-...+++|+.++.+-..- ....-....|.+|-.+|...|..++|+.+...-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4556777777777888888887653221 11222456777888888888998988887776554
No 258
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=91.43 E-value=11 Score=34.34 Aligned_cols=218 Identities=20% Similarity=0.092 Sum_probs=115.3
Q ss_pred CChhHHHHHHHHHHHCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 037477 387 GRFDEAEKMMKAMKNAGFE-PDNITYSQVIFGLCKAGRFEDACNVLDEMEEN-GCIPDIKTWTILIQGHCAANEVDRALL 464 (639)
Q Consensus 387 g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~t~~~li~~~~~~g~~~~a~~ 464 (639)
+....+...+......... .....+......+...+.+..+...+...... ........+......+...++...+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444443211 12445556666666677777766666665542 122344555555666666666677777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHH-HHHcCCChhHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037477 465 CFAKMMEKNYDADADLLDVLIN-GFLSQKRVNGAYKLLVEMIEKVRL--RPWQATFKTLIEKLLGARRLEEAMNLLRLMK 541 (639)
Q Consensus 465 ~~~~m~~~g~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 541 (639)
.+.........+ ......... .+...|+++.|...|...... .. ......+......+...++.+++...+....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 776666543332 111112222 566677777777777766432 11 1122333333333555667777777777666
Q ss_pred hCCCCCC---hHhHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 542 KQNYPPF---PEPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 542 ~~~~~p~---~~~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
....... .......+...++.+.|...+.......+.....+..+...+...|.++++...+.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKA 262 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHH
Confidence 5321100 1222333345566777777777766665544555555555555556677776666653
No 259
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.37 E-value=6.8 Score=31.85 Aligned_cols=87 Identities=11% Similarity=0.002 Sum_probs=48.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHH---HHHHHcCCC
Q 037477 418 LCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEK-NYDADADLLDVL---INGFLSQKR 493 (639)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~l---i~~~~~~g~ 493 (639)
.+..|+++.|++.|.+....-.+ ....||.-.+++.-.|+.++|++=+++.++. |-+ +.....+. -..|...|+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCc
Confidence 44566666666666666654322 4566666666666677777776666666653 212 22222221 223555666
Q ss_pred hhHHHHHHHHHHH
Q 037477 494 VNGAYKLLVEMIE 506 (639)
Q Consensus 494 ~~~A~~~~~~m~~ 506 (639)
-+.|..-|+..-+
T Consensus 131 dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 131 DDAARADFEAAAQ 143 (175)
T ss_pred hHHHHHhHHHHHH
Confidence 6666666665544
No 260
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.36 E-value=12 Score=38.21 Aligned_cols=57 Identities=19% Similarity=0.158 Sum_probs=28.2
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037477 484 LINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLM 540 (639)
Q Consensus 484 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 540 (639)
|..++-+.|+.++|.+.|.+|.+.....-+......|++++...+.+.++..++.+-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 334444555555555555555543222222334445555555555555555555554
No 261
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.23 E-value=3.2 Score=42.60 Aligned_cols=22 Identities=18% Similarity=0.080 Sum_probs=11.8
Q ss_pred HHHHHHHHHHcCCChhHHHHHH
Q 037477 268 TYNGILRVLARHESVRDFWNVV 289 (639)
Q Consensus 268 ~~~~li~~~~~~g~~~~a~~~~ 289 (639)
-.+.++..+-+.|..+.|+++.
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~ 318 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFV 318 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHhhc
Confidence 3555555555666666555553
No 262
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=90.70 E-value=14 Score=36.43 Aligned_cols=132 Identities=17% Similarity=0.076 Sum_probs=91.4
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHH----HCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-CCHH
Q 037477 375 VYDGIHRALTKLGRFDEAEKMMKAMK----NAGFE-PDNITYSQVIFGLCKAGRFEDACNVLDEMEE----NGCI-PDIK 444 (639)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~-p~~~ 444 (639)
.|..+-+.|.-.|+++.|....+.-. +-|-+ .....+..+..+++-.|+++.|.+.|+.-.. .|-+ ....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45556666667788999887655432 22211 2235677888999999999999999887532 2211 2345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 037477 445 TWTILIQGHCAANEVDRALLCFAKMME-----KNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIE 506 (639)
Q Consensus 445 t~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (639)
+.-+|...|.-..++++|+.++.+=+. ....-....+.+|-.+|...|..++|+.+.+.-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 666788888888899999988876443 11223456788999999999999999988776544
No 263
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.69 E-value=3.4 Score=39.00 Aligned_cols=78 Identities=13% Similarity=0.157 Sum_probs=58.1
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 037477 409 ITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMME-----KNYDADADLLDV 483 (639)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~~~ 483 (639)
.++..++..+...|+++.+...++++...... +...|..+|.+|.+.|+...|+..|+.+.+ .|+.|-..+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 35667778888888888888888888876543 777888888888888888888888877765 577776666655
Q ss_pred HHHH
Q 037477 484 LING 487 (639)
Q Consensus 484 li~~ 487 (639)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5444
No 264
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=90.54 E-value=15 Score=39.74 Aligned_cols=224 Identities=11% Similarity=0.074 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHhhcCCCCCCHH-
Q 037477 266 TITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRM-------MEDAVKLFEFMMDGPYKPSVQ- 337 (639)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-------~~~a~~l~~~m~~~g~~p~~~- 337 (639)
...| ++|-.|.|+|++++|.++..+.... .......+...+..|....+ -+....-|++..+.....|++
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK 189 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYK 189 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHH
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHH
Confidence 3455 4677889999999999999655543 34455667777777776532 345666677666554433433
Q ss_pred --HHHHHHHHHhhcCC--Cc----hhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHH
Q 037477 338 --DCSLLLRSISSINN--PD----LGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNI 409 (639)
Q Consensus 338 --~~~~ll~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 409 (639)
.|..+ ..|--... +. .+.+..+.-.+.......+...+ ..--+++..+.+...-+....+ ..
T Consensus 190 ~AvY~il-g~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~--------e~~~L~~LQ~~i~~~Ge~~F~~-~~ 259 (613)
T PF04097_consen 190 RAVYKIL-GRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAY--------ERYTLEDLQKLILKYGESHFNA-GS 259 (613)
T ss_dssp HHHHHHH-HT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS------------HHHHHHHHHHH-GGGCTT---
T ss_pred HHHHHHH-hcCCccccchHHHhCcHHHHHHHHHHhhccCCCcccccc--------ccccHHHHHHHHHHhchhhccc-ch
Confidence 22222 22211110 01 11111111111111110000000 0001122222222332222223 11
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHH
Q 037477 410 TYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKN-YDADADLLDVLINGF 488 (639)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~ 488 (639)
..-.....+.-.|+++.|.+.+.+ ..+...|.+.+.+.+.-|.-.+-.+... ..+.... -.|...-+..||..|
T Consensus 260 ~p~~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y 334 (613)
T PF04097_consen 260 NPLLYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQY 334 (613)
T ss_dssp ----HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHH
Confidence 112234556678999999998877 2223356666666665544333222222 3333211 111225678888888
Q ss_pred HcC---CChhHHHHHHHHHHH
Q 037477 489 LSQ---KRVNGAYKLLVEMIE 506 (639)
Q Consensus 489 ~~~---g~~~~A~~~~~~m~~ 506 (639)
.+. .+..+|.++|--+..
T Consensus 335 ~~~F~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 335 TRSFEITDPREALQYLYLICL 355 (613)
T ss_dssp HHTTTTT-HHHHHHHHHGGGG
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 763 467788888876654
No 265
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.29 E-value=3.6 Score=38.86 Aligned_cols=47 Identities=15% Similarity=0.275 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 037477 459 VDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMI 505 (639)
Q Consensus 459 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 505 (639)
.++++.++..=++.|+-||..+++.+|+.+.+.+++.+|..+.-.|.
T Consensus 116 pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 116 PQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred hHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 33444444444555555555555555555555555555554444443
No 266
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.13 E-value=8.1 Score=39.26 Aligned_cols=78 Identities=12% Similarity=0.145 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC--HHHHHH
Q 037477 443 IKTWTILIQGHCAANEVDRALLCFAKMMEKNYD-ADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW--QATFKT 519 (639)
Q Consensus 443 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~ 519 (639)
...-..+..++.+.|+.++|.+.+.+|.+.... -+......|+.++...+.+.++..++.+-.+. . -|. ...|+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi-~-lpkSAti~YTa 336 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI-S-LPKSATICYTA 336 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc-c-CCchHHHHHHH
Confidence 344445666677888888888888888765322 23446677888888888888888888775332 1 233 455665
Q ss_pred HHH
Q 037477 520 LIE 522 (639)
Q Consensus 520 li~ 522 (639)
.+-
T Consensus 337 ALL 339 (539)
T PF04184_consen 337 ALL 339 (539)
T ss_pred HHH
Confidence 543
No 267
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.05 E-value=2.3 Score=40.13 Aligned_cols=103 Identities=16% Similarity=0.193 Sum_probs=70.0
Q ss_pred cCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCC---CCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 037477 367 LGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAG---FEP--DNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIP 441 (639)
Q Consensus 367 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 441 (639)
.|...+..+....+..-....+++.+...+-.+...- ..| +.++|..++ -.-+.++++.++..=++.|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhcccc
Confidence 3445555566666666666677888887777665421 112 222333222 2336678888888888888889
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 037477 442 DIKTWTILIQGHCAANEVDRALLCFAKMMEKN 473 (639)
Q Consensus 442 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 473 (639)
|..+++.+|+.+.+.+++.+|.++.-.|+...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999888888887777654
No 268
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.01 E-value=2.1 Score=36.39 Aligned_cols=91 Identities=21% Similarity=0.189 Sum_probs=58.0
Q ss_pred HHHHHHHHHHH---HhcCCHHHHHHHHHHHHhCCCCCCh---HhHHHHH-hhcCCHHHHHHHHHHhhcCCCCCHHHHHHH
Q 037477 514 QATFKTLIEKL---LGARRLEEAMNLLRLMKKQNYPPFP---EPFVQYI-SKFGTVEDASEFLKALSVKEYPSSAAYLQV 586 (639)
Q Consensus 514 ~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~ll-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 586 (639)
..+.+.||+.+ .+.++.+++..+++-+.- +.|.. .++-..+ ...|++++|..+|+.+.+..+..+..-..+
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALl 84 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALL 84 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHH
Confidence 34555665544 467899999999998886 34443 4444444 578999999999999887755555444444
Q ss_pred HHHHHhcCCHH---HHHHHHhhC
Q 037477 587 FESFFNEGRHY---EAKDLLYKC 606 (639)
Q Consensus 587 ~~~~~~~g~~~---~A~~~~~~m 606 (639)
..++...|+.+ .|.++++.-
T Consensus 85 A~CL~~~~D~~Wr~~A~evle~~ 107 (160)
T PF09613_consen 85 ALCLYALGDPSWRRYADEVLESG 107 (160)
T ss_pred HHHHHHcCChHHHHHHHHHHhcC
Confidence 45555555533 344455443
No 269
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.83 E-value=0.57 Score=28.45 Aligned_cols=24 Identities=13% Similarity=0.058 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhh
Q 037477 582 AYLQVFESFFNEGRHYEAKDLLYK 605 (639)
Q Consensus 582 ~~~~l~~~~~~~g~~~~A~~~~~~ 605 (639)
+|..|..+|.+.|++++|++++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 478899999999999999999998
No 270
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.77 E-value=12 Score=32.18 Aligned_cols=63 Identities=14% Similarity=0.162 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHcCCChhHHHHHHHHHHHh
Q 037477 444 KTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADL-LDVLINGFLSQKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 444 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (639)
..|...++ +++.+..++|+.-|..+.+.|...-... -...-......|+...|...|+++-..
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d 123 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD 123 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc
Confidence 33443333 2455556666666666666554321111 011112334556666666666665543
No 271
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=89.68 E-value=1.4 Score=28.21 Aligned_cols=23 Identities=13% Similarity=0.138 Sum_probs=9.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 037477 414 VIFGLCKAGRFEDACNVLDEMEE 436 (639)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~ 436 (639)
+...|...|++++|+++|++..+
T Consensus 7 la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 7 LARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344444444444444444433
No 272
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=89.24 E-value=12 Score=31.30 Aligned_cols=55 Identities=20% Similarity=0.274 Sum_probs=25.6
Q ss_pred HccCChhHHHHHHHHHHHCCC--CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037477 384 TKLGRFDEAEKMMKAMKNAGF--EPDNITYSQVIFGLCKAGRFEDACNVLDEMEENG 438 (639)
Q Consensus 384 ~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 438 (639)
.+.|++++|.+.|+.+..+-. +-....--.++.+|.+.|++++|...+++.++..
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 344555555555555554310 0011223334455555555555555555555443
No 273
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.05 E-value=18 Score=33.14 Aligned_cols=118 Identities=14% Similarity=0.061 Sum_probs=64.4
Q ss_pred HHHHHHHHHhcCCchHHHHHHHhhccCcCCHHHHHHHHHHhccChHHHHHHHHHHhc----cCCCCCCHHHHHHHHHHHH
Q 037477 202 VAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVKALGFFRWVGE----HSGYKHNTITYNGILRVLA 277 (639)
Q Consensus 202 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~----~~~~~p~~~~~~~li~~~~ 277 (639)
.+.....+|..+|..+.+...+++... ++. ..+|++|+.+|++... ....+--...|..+-.+++
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAak---------~le--nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lV 161 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAAK---------ALE--NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLV 161 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHH---------Hhh--cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhh
Confidence 445555566666665555555554320 000 2456667776665521 1111223345566667788
Q ss_pred cCCChhHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhcC
Q 037477 278 RHESVRDFWNVVEEMKKE----GYEMDI-DTYIKISRQFQKFRMMEDAVKLFEFMMDG 330 (639)
Q Consensus 278 ~~g~~~~a~~~~~~m~~~----g~~p~~-~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 330 (639)
+...+++|-..|.+-... .--++. ..|...|-.+....++..|.+.++.-.+.
T Consensus 162 rl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 162 RLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred hhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 888888776665443221 111121 23555566666778889999988875554
No 274
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=89.01 E-value=19 Score=33.36 Aligned_cols=167 Identities=14% Similarity=0.177 Sum_probs=88.4
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHCCC--CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037477 374 SVYDGIHRALTKLGRFDEAEKMMKAMKNAGF--EPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQ 451 (639)
Q Consensus 374 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~ 451 (639)
..|+..+ .-.+.|++++|.+.|+.+..... +-...+.-.++-++-+.++++.|....++....-..-...-|..-|.
T Consensus 36 ~LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 36 ELYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 3444444 34577999999999999986631 11233445566778899999999999999876543323334554555
Q ss_pred HHHHc-------CCHHHHHH---HHHHHHHc----CCCCCHHHH------------HHHHHHHHcCCChhHHHHHHHHHH
Q 037477 452 GHCAA-------NEVDRALL---CFAKMMEK----NYDADADLL------------DVLINGFLSQKRVNGAYKLLVEMI 505 (639)
Q Consensus 452 ~~~~~-------g~~~~a~~---~~~~m~~~----g~~~~~~~~------------~~li~~~~~~g~~~~A~~~~~~m~ 505 (639)
+++.- .|...+.+ -|++++.. ...||...- ..+.+-|.+.|.+..|..-+++|.
T Consensus 115 gLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~ 194 (254)
T COG4105 115 GLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVL 194 (254)
T ss_pred HHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 54431 23333333 33333332 222332211 122334555555555555555555
Q ss_pred HhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037477 506 EKVRLRPW-QATFKTLIEKLLGARRLEEAMNLLRLMK 541 (639)
Q Consensus 506 ~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 541 (639)
+.+.-.+- ...+-.|..+|...|-.++|...-+-+.
T Consensus 195 e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 195 ENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred hccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 54222111 2233444455555555555555444333
No 275
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=88.84 E-value=39 Score=36.72 Aligned_cols=86 Identities=5% Similarity=0.062 Sum_probs=48.4
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCch----hhHHHHHHHHHHHhhhccchh-H
Q 037477 128 SSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKA----SDLAALNQFHDGMVKEIAMDN-V 202 (639)
Q Consensus 128 ~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~ 202 (639)
+...|. +|-.|.|.|++++|.++..+.... .......+...+..++...+- +....+..-|+..++.....+ .
T Consensus 111 ~~p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 111 GDPIWA-LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp TEEHHH-HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred CCccHH-HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 344564 677888999999999998655443 445667788888888775321 122345566666665544323 2
Q ss_pred HHHHHHHHhcCCc
Q 037477 203 AKTLVDVVLGSDW 215 (639)
Q Consensus 203 ~~~l~~~~~~~~~ 215 (639)
-.++..+.++|+.
T Consensus 189 K~AvY~ilg~cD~ 201 (613)
T PF04097_consen 189 KRAVYKILGRCDL 201 (613)
T ss_dssp HHHHHHHHHT--C
T ss_pred HHHHHHHHhcCCc
Confidence 2344444444433
No 276
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.80 E-value=12 Score=32.04 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=7.0
Q ss_pred HcCCChhHHHHHHHHH
Q 037477 489 LSQKRVNGAYKLLVEM 504 (639)
Q Consensus 489 ~~~g~~~~A~~~~~~m 504 (639)
...|++.+|..+|+++
T Consensus 55 i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 55 IVRGDWDDALRLLREL 70 (160)
T ss_pred HHhCCHHHHHHHHHHH
Confidence 3344444444444444
No 277
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.60 E-value=24 Score=33.96 Aligned_cols=153 Identities=11% Similarity=0.025 Sum_probs=103.1
Q ss_pred ccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHH--HHHHHHHHcCCHH
Q 037477 385 KLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDI--KTWT--ILIQGHCAANEVD 460 (639)
Q Consensus 385 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~t~~--~li~~~~~~g~~~ 460 (639)
..|++.+|-..++++.+.- +.|...++..=++|.-+|+.+.-...++++... ..||. .+|. ...-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 4577778877888877653 667788888888899999988888888887754 11333 3332 3334456789999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037477 461 RALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRL---RPWQATFKTLIEKLLGARRLEEAMNLL 537 (639)
Q Consensus 461 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~ 537 (639)
+|.+.-++..+-+ +-|.....++...+-..|+..++.++..+-...... .....-|.. .-.+...+.++.|+++|
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~-Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHT-ALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHH-HHhhhcccchhHHHHHH
Confidence 9999888888765 556777777777888889999998887764332110 000111222 22345568899999999
Q ss_pred HHHH
Q 037477 538 RLMK 541 (639)
Q Consensus 538 ~~m~ 541 (639)
+.-.
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 8643
No 278
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=87.98 E-value=29 Score=34.21 Aligned_cols=308 Identities=16% Similarity=0.111 Sum_probs=177.8
Q ss_pred ccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH--cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHH
Q 037477 243 RIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLA--RHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQ--FQKFRMME 318 (639)
Q Consensus 243 ~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~ 318 (639)
-..+..+-++|+.-.++.| |.+|-.++. -.|+-..|.++-.+-.+. +.-|..-...++.+ -.-.|+++
T Consensus 66 w~sP~t~~Ryfr~rKRdrg-------yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~ 137 (531)
T COG3898 66 WESPYTARRYFRERKRDRG-------YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYE 137 (531)
T ss_pred HhCcHHHHHHHHHHHhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchH
Confidence 3455667777777654444 445555554 457888888877665432 12243333344433 34579999
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHH-hhc-CCCchhHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHccCChhHHHHH
Q 037477 319 DAVKLFEFMMDGPYKPSVQDCSLLLRSI-SSI-NNPDLGLVFRVANKYESLGNSLS-KSVYDGIHRALTKLGRFDEAEKM 395 (639)
Q Consensus 319 ~a~~l~~~m~~~g~~p~~~~~~~ll~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~ 395 (639)
+|.+-|+.|... |. |--.=++++ ... ..++.+.+.+.-+.. .+..|. ...+.+.+...|..|+++.|+++
T Consensus 138 ~Ar~kfeAMl~d---PE--tRllGLRgLyleAqr~GareaAr~yAe~A--a~~Ap~l~WA~~AtLe~r~~~gdWd~AlkL 210 (531)
T COG3898 138 DARKKFEAMLDD---PE--TRLLGLRGLYLEAQRLGAREAARHYAERA--AEKAPQLPWAARATLEARCAAGDWDGALKL 210 (531)
T ss_pred HHHHHHHHHhcC---hH--HHHHhHHHHHHHHHhcccHHHHHHHHHHH--HhhccCCchHHHHHHHHHHhcCChHHHHHH
Confidence 999999999863 32 222222221 111 112222232222221 222232 34567788899999999999999
Q ss_pred HHHHHHCC-CCCCHHh--HHHHHHHHH---hcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHH
Q 037477 396 MKAMKNAG-FEPDNIT--YSQVIFGLC---KAGRFEDACNVLDEMEENGCIPDIK-TWTILIQGHCAANEVDRALLCFAK 468 (639)
Q Consensus 396 ~~~m~~~g-~~~~~~~--~~~li~~~~---~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~ 468 (639)
.+.-.... +.++..- -..|+.+-. -.-+...|...-.+..+ ..||.. .-..-..++.+.|+..++-.+++.
T Consensus 211 vd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~ 288 (531)
T COG3898 211 VDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILET 288 (531)
T ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHH
Confidence 98876543 3344322 122332221 12345555554444443 345543 233445778899999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 037477 469 MMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW-QATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPP 547 (639)
Q Consensus 469 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 547 (639)
+-+....|+. + ..|.+...-+.+..-++...+-..++|| ...-..+.++-...|++..|..--+...+ ..|
T Consensus 289 aWK~ePHP~i--a----~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~p 360 (531)
T COG3898 289 AWKAEPHPDI--A----LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAP 360 (531)
T ss_pred HHhcCCChHH--H----HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCc
Confidence 9887544443 2 2343333334555555555544456665 45566677788888998887766555544 456
Q ss_pred ChHhHHHHH----hhcCCHHHHHHHHHHhhcC
Q 037477 548 FPEPFVQYI----SKFGTVEDASEFLKALSVK 575 (639)
Q Consensus 548 ~~~~~~~ll----~~~g~~~~a~~~~~~~~~~ 575 (639)
....|.-+- ...|+-+++...+.+..+.
T Consensus 361 res~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 361 RESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 655554432 3569999999988877655
No 279
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=87.93 E-value=55 Score=37.35 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHH
Q 037477 579 SSAAYLQVFESFFNEGRHYEAKDL 602 (639)
Q Consensus 579 ~~~~~~~l~~~~~~~g~~~~A~~~ 602 (639)
-......|+.++...|..+.|.++
T Consensus 1183 ~r~E~~~Ll~~l~~~g~~eqa~~L 1206 (1265)
T KOG1920|consen 1183 IRNELKRLLEVLVTFGMDEQARAL 1206 (1265)
T ss_pred ccHHHHHHHHHHHHcCCcHHHHHH
Confidence 333445678888888888877655
No 280
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.88 E-value=23 Score=32.89 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCccccCCh
Q 037477 582 AYLQVFESFFNEGRHYEAKDLLYKCPHHIRQDS 614 (639)
Q Consensus 582 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 614 (639)
+...|+.+|-. .+..+-.++++.-..++-.+|
T Consensus 306 AMTnlv~aYQ~-NdI~eFE~Il~~~~~~IM~Dp 337 (440)
T KOG1464|consen 306 AMTNLVAAYQN-NDIIEFERILKSNRSNIMDDP 337 (440)
T ss_pred HHHHHHHHHhc-ccHHHHHHHHHhhhccccccH
Confidence 44556666543 334444444444333333333
No 281
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=87.81 E-value=33 Score=34.62 Aligned_cols=381 Identities=10% Similarity=0.053 Sum_probs=201.1
Q ss_pred CCHHHHHHHHHhcCCChHHHHHHHHHHhh-cCCCCCC------------hHHHHHHHHHHhccCChHHHHHHHHHHHhcC
Q 037477 93 LTHESVVYVLRKLDNDPEKASAFFNWVCD-KKQFRPS------------STVYSLMLRNLVNKDSLKQFWVTLRRMKEDH 159 (639)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~A~~~f~~~~~-~~~~~~~------------~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g 159 (639)
.-..++..++.--.+..+.|++.|..-.. ..+..|. -..=+..++.+...|++.++..++++|...=
T Consensus 79 ~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~l 158 (549)
T PF07079_consen 79 AYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERL 158 (549)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 33344444444446888999888874433 2222221 1222567788899999999999999988754
Q ss_pred C----CCCHHHHHHHHHHHHhcCchhhHH-----HHHHHHH-------HHhhhc--------cchhHHHHHHHHHh----
Q 037477 160 C----YIEEETYLSILGVLKKAKKASDLA-----ALNQFHD-------GMVKEI--------AMDNVAKTLVDVVL---- 211 (639)
Q Consensus 160 ~----~~~~~t~~~ll~~~~~~~~~~~~~-----~~~~~~~-------~~~~~~--------~~~~~~~~l~~~~~---- 211 (639)
. .-+..+|+.++-.+.++=-.+-.+ -.-..|+ .+.... +.++....++.-..
T Consensus 159 lkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~ 238 (549)
T PF07079_consen 159 LKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPK 238 (549)
T ss_pred hhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCH
Confidence 3 368888988666666542111100 0000011 111000 01111222221111
Q ss_pred -cCCchHHHHHHHhhccCcCCHHHHHHHHHH-hccChHHHHHHHHHHhccCCCC----CCHHHHHHHHHHHHcCCChhHH
Q 037477 212 -GSDWDDKIGKKLEDMKIELSDNFVLTVLKE-LRIYPVKALGFFRWVGEHSGYK----HNTITYNGILRVLARHESVRDF 285 (639)
Q Consensus 212 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~A~~~f~~~~~~~~~~----p~~~~~~~li~~~~~~g~~~~a 285 (639)
+......+....++....+.++.++..+.. .-.+++++..+-+.+..- .+. .=+.++..++...++.++...|
T Consensus 239 e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~~~e~~~~~ce~ia~~-~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a 317 (549)
T PF07079_consen 239 ERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMSDPEQVGHFCEAIASS-KIEKLKEELIDRFGNLLSFKVKQVQTEEA 317 (549)
T ss_pred hhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhcChHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 112223444455555677788888877753 334666666555554211 111 1356888999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHH-------HHHHHHhc----CCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH---hhcCC
Q 037477 286 WNVVEEMKKEGYEMDIDTYIK-------ISRQFQKF----RMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSI---SSINN 351 (639)
Q Consensus 286 ~~~~~~m~~~g~~p~~~~~~~-------li~~~~~~----g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~---~~~~~ 351 (639)
.+.+.-+... .|+...-.. +-+..+.- -+...=+.+|+.....++.-.. ....|+.+. -+.|.
T Consensus 318 ~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQ-Lvh~L~~~Ak~lW~~g~ 394 (549)
T PF07079_consen 318 KQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQ-LVHYLVFGAKHLWEIGQ 394 (549)
T ss_pred HHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHH-HHHHHHHHHHHHHhcCC
Confidence 9988877655 333322111 11112210 1122223334433332221111 111122211 11221
Q ss_pred CchhHHHHHHHHHHhcC---CCCChhhHHHHHHHHHc---cCChhHHHHHHHHHHHCCCCCCHHh----HHHHHHH--HH
Q 037477 352 PDLGLVFRVANKYESLG---NSLSKSVYDGIHRALTK---LGRFDEAEKMMKAMKNAGFEPDNIT----YSQVIFG--LC 419 (639)
Q Consensus 352 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~~----~~~li~~--~~ 419 (639)
..+.+..+++...+.. ......++..+=.+|.. ...+..-.++-+-+.+.|++|-.+. -|.|-++ +.
T Consensus 395 -~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLy 473 (549)
T PF07079_consen 395 -CDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLY 473 (549)
T ss_pred -ccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHH
Confidence 1233444444333321 11222233333334433 2445666677777778888775443 3334333 44
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037477 420 KAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLI 485 (639)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 485 (639)
..|++.++.-.-..+.+ +.|++.+|..+.-+.....++++|..++..+ +|+..++++=+
T Consensus 474 sqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~dskv 532 (549)
T PF07079_consen 474 SQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDSKV 532 (549)
T ss_pred hcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHHHH
Confidence 67999998766555555 5689999999988889999999999999764 66666665533
No 282
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=87.72 E-value=14 Score=30.18 Aligned_cols=91 Identities=18% Similarity=0.057 Sum_probs=70.3
Q ss_pred HHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHH---HHHHHHHHHHHc
Q 037477 381 RALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEEN-GCIPDIK---TWTILIQGHCAA 456 (639)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~---t~~~li~~~~~~ 456 (639)
-+++..|+++.|++.|.+....- +-....||.-..++.-.|+.++|++=+++..+. |-+ +.. .|..-...|...
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence 35788999999999999987653 446778999999999999999999999988764 322 222 233334456778
Q ss_pred CCHHHHHHHHHHHHHcC
Q 037477 457 NEVDRALLCFAKMMEKN 473 (639)
Q Consensus 457 g~~~~a~~~~~~m~~~g 473 (639)
|+-+.|..=|+..-+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 99999999888887776
No 283
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.62 E-value=25 Score=33.13 Aligned_cols=51 Identities=12% Similarity=0.040 Sum_probs=45.6
Q ss_pred hhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037477 557 SKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCP 607 (639)
Q Consensus 557 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 607 (639)
..+|.+.+|.++.++.....|-+...|..++..|+..|+--.|.+-++++.
T Consensus 290 le~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 290 LEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 478999999999999999999999999999999999999777777777654
No 284
>PRK11906 transcriptional regulator; Provisional
Probab=87.58 E-value=35 Score=34.73 Aligned_cols=113 Identities=10% Similarity=0.136 Sum_probs=75.1
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 037477 387 GRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPD-IKTWTILIQGHCAANEVDRALLC 465 (639)
Q Consensus 387 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~ 465 (639)
.+..+|.+.-+...+.+ +.|......+..+....|+++.|...|++....+ || ..+|......+...|+.++|.+.
T Consensus 318 ~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 318 LAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred HHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34566777777777776 5577777777777777888999999999888765 44 34555555566778899999998
Q ss_pred HHHHHHcCC-CCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 037477 466 FAKMMEKNY-DADADLLDVLINGFLSQKRVNGAYKLLVE 503 (639)
Q Consensus 466 ~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 503 (639)
+++..+... +.-.......++.|+..+ .++|.+++-+
T Consensus 395 i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 395 IDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 888766421 112233333445666544 4667766654
No 285
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.33 E-value=13 Score=32.80 Aligned_cols=95 Identities=16% Similarity=0.178 Sum_probs=52.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHH------H
Q 037477 410 TYSQVIFGLCKAGRFEDACNVLDEMEENGCIPD--IKTWTILIQGHCAANEVDRALLCFAKMMEKNYDA-DAD------L 480 (639)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~------~ 480 (639)
.+..+...|++.|+.++|.+.|.++.+....+. ...+-.+|+.....+++..+.....+....--.+ |.. .
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 456666777777777777777777666543332 2345566666667777777666666554421111 111 1
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHH
Q 037477 481 LDVLINGFLSQKRVNGAYKLLVEMIE 506 (639)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (639)
|..| .+...+++..|-+.|-+...
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHccCc
Confidence 1121 12345667777666665543
No 286
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.31 E-value=8.5 Score=33.93 Aligned_cols=63 Identities=10% Similarity=0.063 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 037477 267 ITYNGILRVLARHESVRDFWNVVEEMKKEGYEMD--IDTYIKISRQFQKFRMMEDAVKLFEFMMD 329 (639)
Q Consensus 267 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 329 (639)
..+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+|......+++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5678899999999999999999999988754443 45577888889999999999888877754
No 287
>PRK11906 transcriptional regulator; Provisional
Probab=86.92 E-value=38 Score=34.47 Aligned_cols=147 Identities=12% Similarity=0.067 Sum_probs=74.2
Q ss_pred hhHHHHHHHHHHH-CCCCCC-HHhHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 037477 389 FDEAEKMMKAMKN-AGFEPD-NITYSQVIFGLCK---------AGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAAN 457 (639)
Q Consensus 389 ~~~A~~~~~~m~~-~g~~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g 457 (639)
.+.|+.+|.+... ....|+ ...|..+..++.. .....+|.+.-++..+.+.. |......+..+....|
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhc
Confidence 4567777877762 122443 3334333332221 22344555555555555533 5666666666666666
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037477 458 EVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLL 537 (639)
Q Consensus 458 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 537 (639)
+.+.|...|++....+ +-...+|...-..+.-+|+.++|.+.+++..+....+.-....-..++.|+.. .+++|+.++
T Consensus 353 ~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 353 QAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLY 430 (458)
T ss_pred chhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHH
Confidence 6777777777776653 11223333333344556777777777776543311111222233334445443 345555555
Q ss_pred H
Q 037477 538 R 538 (639)
Q Consensus 538 ~ 538 (639)
-
T Consensus 431 ~ 431 (458)
T PRK11906 431 Y 431 (458)
T ss_pred h
Confidence 4
No 288
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.81 E-value=6.1 Score=30.54 Aligned_cols=60 Identities=5% Similarity=0.110 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037477 461 RALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIE 522 (639)
Q Consensus 461 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 522 (639)
+..+-++.+....+.|+..+..+.+.+|.+.+++..|.++|+.++.+.+..-+ .|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~--~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKE--IYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TT--HHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHH--HHHHHHH
Confidence 45555666666777788888888888888888888888888877776443322 5655553
No 289
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=86.37 E-value=1.9 Score=26.13 Aligned_cols=23 Identities=9% Similarity=0.069 Sum_probs=11.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 037477 446 WTILIQGHCAANEVDRALLCFAK 468 (639)
Q Consensus 446 ~~~li~~~~~~g~~~~a~~~~~~ 468 (639)
|+.|...|.+.|++++|.+++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555555555555554
No 290
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.29 E-value=1.6 Score=36.43 Aligned_cols=80 Identities=13% Similarity=0.107 Sum_probs=50.3
Q ss_pred hcCCHHHHHHHHHHHHhC-CCCCChHhHHHHH-hhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH---HHH
Q 037477 526 GARRLEEAMNLLRLMKKQ-NYPPFPEPFVQYI-SKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHY---EAK 600 (639)
Q Consensus 526 ~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~ 600 (639)
..++.+++..+++.|.-. .-.+...+|-..+ ...|++++|.++|+.+.+..+..+..-..+..++.-.|+.+ .|.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~Wr~~A~ 101 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEWHVHAD 101 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHHHHHHH
Confidence 478999999999998862 2223344665555 57899999999999998874443433333333444445432 355
Q ss_pred HHHhh
Q 037477 601 DLLYK 605 (639)
Q Consensus 601 ~~~~~ 605 (639)
+++..
T Consensus 102 ~~le~ 106 (153)
T TIGR02561 102 EVLAR 106 (153)
T ss_pred HHHHh
Confidence 55543
No 291
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=86.17 E-value=43 Score=34.34 Aligned_cols=164 Identities=11% Similarity=0.059 Sum_probs=93.3
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037477 372 SKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQ 451 (639)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~ 451 (639)
|.....+++..++.+.+..-.+.+-.+|..-| -+...|-.++.+|..+ .-++-..+|+++.+..+. |++.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44445566667777777777777777776654 3556677777777766 556666777777665543 4433344444
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 037477 452 GHCAANEVDRALLCFAKMMEKNYD-----ADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLG 526 (639)
Q Consensus 452 ~~~~~g~~~~a~~~~~~m~~~g~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 526 (639)
-|.+ ++...+...|.+....-++ .=...|.-|+..- ..+.+..+.+...+....|...-...+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4444 6666666666666554221 0112344433211 234555566666665554554445555555566666
Q ss_pred cCCHHHHHHHHHHHHh
Q 037477 527 ARRLEEAMNLLRLMKK 542 (639)
Q Consensus 527 ~g~~~~A~~~~~~m~~ 542 (639)
..++++|+++++.+.+
T Consensus 218 ~eN~~eai~Ilk~il~ 233 (711)
T COG1747 218 NENWTEAIRILKHILE 233 (711)
T ss_pred ccCHHHHHHHHHHHhh
Confidence 6667777776665444
No 292
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.95 E-value=7.2 Score=29.80 Aligned_cols=61 Identities=5% Similarity=0.077 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 037477 459 VDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLI 521 (639)
Q Consensus 459 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 521 (639)
.-++.+-++.+....+.|+.....+.+++|.+.+++.-|.++|+.++.+.+. +...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 3345555666666667777777777777777777777777777766654332 333455544
No 293
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=85.15 E-value=53 Score=34.43 Aligned_cols=332 Identities=12% Similarity=0.082 Sum_probs=179.7
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 037477 265 NTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDID-TYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLL 343 (639)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll 343 (639)
+...|+.||.---...+++.+..+++.+... -|... -|......=.+.|..+.+.++|++-++ |+.-+...|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence 3444555554444444455666666666644 34433 344444445566777777777776665 3445555555555
Q ss_pred HHHhhcCCCchhHHHHHHHHHHh-cCCC-CChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh-
Q 037477 344 RSISSINNPDLGLVFRVANKYES-LGNS-LSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCK- 420 (639)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~- 420 (639)
..+.. ..++...+...++.... .|.. .+...|...|.--...+++.....++++..+. ....|+..-.-|.+
T Consensus 121 ~f~~n-~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~ 195 (577)
T KOG1258|consen 121 AFLKN-NNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQL 195 (577)
T ss_pred HHHhc-cCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHH
Confidence 54443 33444445555544433 2332 23445667777667778888888888887753 22223322222211
Q ss_pred --c------CCHHHHHHHHHHHHHC---C-CCCCHHHHH------------------HHHH-------HHHHcCCHHHHH
Q 037477 421 --A------GRFEDACNVLDEMEEN---G-CIPDIKTWT------------------ILIQ-------GHCAANEVDRAL 463 (639)
Q Consensus 421 --~------g~~~~A~~~~~~m~~~---~-~~p~~~t~~------------------~li~-------~~~~~g~~~~a~ 463 (639)
. ...+++.++-...... + ..+....+. .+-. ++-.........
T Consensus 196 l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr 275 (577)
T KOG1258|consen 196 LNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKR 275 (577)
T ss_pred HhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHH
Confidence 1 1122222221111100 0 000111111 1111 111111222222
Q ss_pred HHHHHHHHc---CC----CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037477 464 LCFAKMMEK---NY----DADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNL 536 (639)
Q Consensus 464 ~~~~~m~~~---g~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 536 (639)
..++.-++. .+ .++..+|..-+.--.+.|+.+...-+|+...-. +..-...|-..++-....|+.+-|..+
T Consensus 276 ~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~--cA~Y~efWiky~~~m~~~~~~~~~~~~ 353 (577)
T KOG1258|consen 276 WGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP--CALYDEFWIKYARWMESSGDVSLANNV 353 (577)
T ss_pred HhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH--HhhhHHHHHHHHHHHHHcCchhHHHHH
Confidence 222222221 11 235677888888888999999999999987643 222344666666666667888888888
Q ss_pred HHHHHhCC--CCCChHhHHHHHh-hcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHH---HHHhhC
Q 037477 537 LRLMKKQN--YPPFPEPFVQYIS-KFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAK---DLLYKC 606 (639)
Q Consensus 537 ~~~m~~~~--~~p~~~~~~~ll~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~m 606 (639)
+....+-- -.|....+.+.++ ..|+.++|..+++.+.+..|...+.-..-+....+.|+.+.+. +++...
T Consensus 354 ~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~ 429 (577)
T KOG1258|consen 354 LARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSI 429 (577)
T ss_pred HHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHh
Confidence 77666532 2355555556665 4589999999999999887544555555566777888888887 555543
No 294
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.96 E-value=25 Score=30.44 Aligned_cols=71 Identities=15% Similarity=0.215 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCH
Q 037477 265 NTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDID-TYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSV 336 (639)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~ 336 (639)
....|..-+. +++.+..++|+.-|..+.+.|...-+. .---+.......|+-..|...|++.-...-.|-.
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~ 129 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQI 129 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcch
Confidence 3445555554 566778888999999888876432221 1122334467788899999999988765444443
No 295
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.91 E-value=16 Score=35.10 Aligned_cols=149 Identities=11% Similarity=0.067 Sum_probs=108.2
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHH----HHHHHHhcCC
Q 037477 454 CAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKT----LIEKLLGARR 529 (639)
Q Consensus 454 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~----li~~~~~~g~ 529 (639)
.-.|+..+|...|+++++. .+-|...+.-.-.+|.-.|+.+.....++++..+ ..|+...|.. +.-++...|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3578888888899999886 4668888888888999999999999999988764 3455433332 2334557899
Q ss_pred HHHHHHHHHHHHhCCCCCC--hHhHHHHHhhcCCHHHHHHHHHHhhcCCCC----CHHHHHHHHHHHHhcCCHHHHHHHH
Q 037477 530 LEEAMNLLRLMKKQNYPPF--PEPFVQYISKFGTVEDASEFLKALSVKEYP----SSAAYLQVFESFFNEGRHYEAKDLL 603 (639)
Q Consensus 530 ~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~ 603 (639)
+++|++.-++..+-+-... ..+...++...|+..++.++..+-...-.. -...|-+..-.+...+.++.|+++|
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 9999999888876332221 234556667789999999987766554222 2334566677777889999999999
Q ss_pred hh
Q 037477 604 YK 605 (639)
Q Consensus 604 ~~ 605 (639)
++
T Consensus 271 D~ 272 (491)
T KOG2610|consen 271 DR 272 (491)
T ss_pred HH
Confidence 97
No 296
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=84.89 E-value=0.19 Score=42.65 Aligned_cols=54 Identities=13% Similarity=0.258 Sum_probs=37.7
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037477 272 ILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFE 325 (639)
Q Consensus 272 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~ 325 (639)
++..+.+.+.++.....++.+...+...+....+.++..|++.++.++..++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 556667777777777778877776655567777888888888776666666665
No 297
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=84.62 E-value=45 Score=33.17 Aligned_cols=61 Identities=18% Similarity=0.148 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCh-HhHHHHHhhcCCHHHHHHHHHHhhc
Q 037477 514 QATFKTLIEKLLGARRLEEAMNLLRLMKKQNY-----PPFP-EPFVQYISKFGTVEDASEFLKALSV 574 (639)
Q Consensus 514 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----~p~~-~~~~~ll~~~g~~~~a~~~~~~~~~ 574 (639)
..+|..+.+.+.+.|.++.|...+..+...+. .|.. ..+..++-..|+-++|...++....
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44666666777777777777777776665331 2222 2234444566666777666665554
No 298
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.17 E-value=39 Score=32.10 Aligned_cols=122 Identities=19% Similarity=0.123 Sum_probs=74.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChh
Q 037477 416 FGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVN 495 (639)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 495 (639)
......|++.+|..+|......... +...--.+..+|...|+.+.|..++..+...--.........=|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3455678888888888887765433 345566677888888888888888887765422212222222334444444444
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 496 GAYKLLVEMIEKVRLRP-WQATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 496 ~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
+...+-.+.-. .| |...-..+...+...|+.++|.+.+-.+.+
T Consensus 221 ~~~~l~~~~aa----dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 221 EIQDLQRRLAA----DPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444432 34 455556666777777888888776655554
No 299
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.08 E-value=15 Score=28.13 Aligned_cols=48 Identities=21% Similarity=0.153 Sum_probs=32.6
Q ss_pred chhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 037477 353 DLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMK 400 (639)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 400 (639)
|.-.+.+.+..+......|++.+..+.+++|-+.+|+..|.++|+-.+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344555556666666677777777777777777777777777777665
No 300
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=83.76 E-value=35 Score=31.18 Aligned_cols=142 Identities=20% Similarity=0.257 Sum_probs=84.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 037477 414 VIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKR 493 (639)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 493 (639)
.|..|.+.-++.-|....+++.+ | ..+- +.+--|.+..+..--.++.+-....++.-+..-..+++ +...|+
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiE----P-IQSR-CAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GD 207 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIE----P-IQSR-CAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGD 207 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhh----h-HHhh-hHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccch
Confidence 34555555566666555555543 2 1121 22223445544444444444444455555555555554 566777
Q ss_pred hhHHHHHHHHHHHhCCC-----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHhhcCCH
Q 037477 494 VNGAYKLLVEMIEKVRL-----------RPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYISKFGTV 562 (639)
Q Consensus 494 ~~~A~~~~~~m~~~~~~-----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~g~~ 562 (639)
...|+.-++.-...+|. .|.......|+..|.+ +++++|.+++.++-+.|+.|.. ....++..+.++
T Consensus 208 MRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~D-ii~~~FRv~K~~ 285 (333)
T KOG0991|consen 208 MRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPED-IITTLFRVVKNM 285 (333)
T ss_pred HHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHhc
Confidence 77777777765543332 4667777888886665 7899999999999999998864 334455444444
Q ss_pred HHH
Q 037477 563 EDA 565 (639)
Q Consensus 563 ~~a 565 (639)
+-+
T Consensus 286 ~~~ 288 (333)
T KOG0991|consen 286 DVA 288 (333)
T ss_pred cHH
Confidence 433
No 301
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=83.53 E-value=34 Score=30.86 Aligned_cols=154 Identities=17% Similarity=0.141 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037477 443 IKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIE 522 (639)
Q Consensus 443 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 522 (639)
+..||-+.--+...|+++.|.+.|+...+.+..-+-...|.-|. +--.|+++-|.+-|...-+...-.|-...|.-+++
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 35677777777778888888888887777653333333333332 22357777777766666555444444444444433
Q ss_pred HHHhcCCHHHHHH-HHHHHHhCCCCCChHhHHHHHh--hcCCHHHHHHHHHHhhcCC-------CCCHHHHHHHHHHHHh
Q 037477 523 KLLGARRLEEAMN-LLRLMKKQNYPPFPEPFVQYIS--KFGTVEDASEFLKALSVKE-------YPSSAAYLQVFESFFN 592 (639)
Q Consensus 523 ~~~~~g~~~~A~~-~~~~m~~~~~~p~~~~~~~ll~--~~g~~~~a~~~~~~~~~~~-------~~~~~~~~~l~~~~~~ 592 (639)
+.-++.+|.. +.++... .|...|...+. -.|.+.+ +.+++++.... ..-.++|--|...|..
T Consensus 178 ---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yLgkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~ 249 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYLGKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLS 249 (297)
T ss_pred ---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHHhhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhc
Confidence 2234444443 3333332 22222222221 1122111 12223322221 1134567777888888
Q ss_pred cCCHHHHHHHHhh
Q 037477 593 EGRHYEAKDLLYK 605 (639)
Q Consensus 593 ~g~~~~A~~~~~~ 605 (639)
.|+.++|..+|+-
T Consensus 250 ~G~~~~A~~LfKL 262 (297)
T COG4785 250 LGDLDEATALFKL 262 (297)
T ss_pred cccHHHHHHHHHH
Confidence 8888888888776
No 302
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=83.23 E-value=16 Score=28.27 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=31.2
Q ss_pred chhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHC
Q 037477 353 DLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNA 402 (639)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 402 (639)
|.-.+.+-+..+....+.|++.+..+.+++|-+.+++..|.++|+-.+..
T Consensus 25 D~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 25 DGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp -HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44455555666666677777777777777777777777777777777643
No 303
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.22 E-value=13 Score=33.11 Aligned_cols=73 Identities=12% Similarity=0.165 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHcCCChhHHH
Q 037477 425 EDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEK---NYDADADLLDVLINGFLSQKRVNGAY 498 (639)
Q Consensus 425 ~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~A~ 498 (639)
+.|...|-.+...+.--++.....+...|. ..+.+++..++.+..+. +-.+|...+.+|...|-+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 345555555555544434444443433333 45556666666555551 22455666666666666666666554
No 304
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.52 E-value=79 Score=34.39 Aligned_cols=95 Identities=11% Similarity=0.058 Sum_probs=64.0
Q ss_pred cChHHHHHHHHHHhccCCCCC---CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037477 244 IYPVKALGFFRWVGEHSGYKH---NTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDA 320 (639)
Q Consensus 244 ~~~~~A~~~f~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 320 (639)
+.+++|++.-... .|..| -...+...|..+.-.|++++|-...-.|... +..-|.-.+..+...++....
T Consensus 370 k~yeeAl~~~k~~---~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 370 KKYEEALDAAKAS---IGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred hHHHHHHHHHHhc---cCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccccchh
Confidence 5677788777654 34444 4567888899999999999999998888865 677777777777777665543
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHhh
Q 037477 321 VKLFEFMMDGPYKPSVQDCSLLLRSISS 348 (639)
Q Consensus 321 ~~l~~~m~~~g~~p~~~~~~~ll~~~~~ 348 (639)
. .-+....-..+...|..+|..+..
T Consensus 443 a---~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 443 A---PYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred h---ccCCCCCcccCchHHHHHHHHHHH
Confidence 2 233333233455566666666554
No 305
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=81.76 E-value=58 Score=32.36 Aligned_cols=65 Identities=15% Similarity=0.149 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 037477 442 DIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDA---DADLLDVLINGFLSQKRVNGAYKLLVEMIE 506 (639)
Q Consensus 442 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (639)
...+|..+...+.+.|.++.|...+.++...+... +......-....-..|+..+|+..+++..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44567777777777777777777777776643111 223333334555666777777777776665
No 306
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=80.84 E-value=3.5 Score=24.18 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 580 SAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 580 ~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
+..|..+...|...|++++|++.+++.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~a 27 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKA 27 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 356888999999999999999999884
No 307
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.60 E-value=2.9 Score=23.08 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhh
Q 037477 582 AYLQVFESFFNEGRHYEAKDLLYK 605 (639)
Q Consensus 582 ~~~~l~~~~~~~g~~~~A~~~~~~ 605 (639)
....+..++...|++++|..++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 455678889999999999988763
No 308
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.55 E-value=41 Score=35.25 Aligned_cols=98 Identities=21% Similarity=0.215 Sum_probs=50.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHH
Q 037477 419 CKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAY 498 (639)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 498 (639)
.+.|+++.|.++..+.. +..-|..|.++..+.|++..|.+.|.+..+ |..|+-.+...|+-+...
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 35566666655544332 445566666666666666666666655443 234555555555554444
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037477 499 KLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLR 538 (639)
Q Consensus 499 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 538 (639)
.+-....+. |. .|...-+|...|+++++.+++.
T Consensus 713 ~la~~~~~~-g~------~N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 713 VLASLAKKQ-GK------NNLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHHHhh-cc------cchHHHHHHHcCCHHHHHHHHH
Confidence 443333332 21 1222223445566666666553
No 309
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.52 E-value=90 Score=33.52 Aligned_cols=183 Identities=14% Similarity=0.072 Sum_probs=92.9
Q ss_pred hHHHHHHHHHHhcCCCCChhhH-HHHHHH-HHccCChhHHHHHHHHHHH-------CCCCCCHHhHHHHHHHHHhcC---
Q 037477 355 GLVFRVANKYESLGNSLSKSVY-DGIHRA-LTKLGRFDEAEKMMKAMKN-------AGFEPDNITYSQVIFGLCKAG--- 422 (639)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~-~~li~~-~~~~g~~~~A~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~g--- 422 (639)
..+...++...+.|........ .....+ +....|++.|...|+...+ .| .......+..+|.+..
T Consensus 229 ~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 229 SEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCc
Confidence 3455555555555443222111 111222 4456677888888877765 44 2334555666666543
Q ss_pred --CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--cCCChhHH
Q 037477 423 --RFEDACNVLDEMEENGCIPDIKTWTILIQGHCA-ANEVDRALLCFAKMMEKNYDADADLLDVLINGFL--SQKRVNGA 497 (639)
Q Consensus 423 --~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~--~~g~~~~A 497 (639)
+.+.|..++.+..+.|. |+....-..+..... ..+...|.++|...-+.|.. +...+.+++-... -..+.+.|
T Consensus 306 ~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred cccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHH
Confidence 45667777777777664 344433333222222 24566777777777777732 2222222211111 22356677
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 037477 498 YKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNY 545 (639)
Q Consensus 498 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 545 (639)
..++....++ | .|...--...+..+.. +..+.+.-.+..+.+.|.
T Consensus 384 ~~~~k~aA~~-g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 384 FAYYKKAAEK-G-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHc-c-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 7777777665 4 2221111222233333 666666666666665544
No 310
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.02 E-value=64 Score=36.16 Aligned_cols=115 Identities=15% Similarity=0.131 Sum_probs=62.7
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCC---HHhHHHHHHHHHhcCCH--HHHHHHHHHHHHCCCCCCHHHHH---
Q 037477 376 YDGIHRALTKLGRFDEAEKMMKAMKNAGFEPD---NITYSQVIFGLCKAGRF--EDACNVLDEMEENGCIPDIKTWT--- 447 (639)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~~~~p~~~t~~--- 447 (639)
|..++..|...|+.++|+++|.+..+.--.-| ...+--++.-+.+.+.. +-.++.-+...+....-....++
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 78899999999999999999999876320011 11122244444444433 33333333332221110000111
Q ss_pred ---------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 037477 448 ---------ILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLS 490 (639)
Q Consensus 448 ---------~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (639)
.-+-.|......+-+..+++.+....-.++....+.++.-|+.
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1233455666677777777777776556666667777766653
No 311
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=78.01 E-value=4.7 Score=25.00 Aligned_cols=29 Identities=14% Similarity=0.291 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 037477 301 IDTYIKISRQFQKFRMMEDAVKLFEFMMD 329 (639)
Q Consensus 301 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 329 (639)
..+++.+...|...|++++|+.++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35678888888888888888888887753
No 312
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=77.78 E-value=5.1 Score=23.59 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 580 SAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 580 ~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
+..|..+..+|...|++++|++.+++.
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~a 27 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRA 27 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 357889999999999999999999885
No 313
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.97 E-value=1.1e+02 Score=32.82 Aligned_cols=186 Identities=15% Similarity=0.065 Sum_probs=90.2
Q ss_pred hHHHHHHHHHHhccCCCCCCHHHHHHHHHH-HHcCCChhHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcC--
Q 037477 246 PVKALGFFRWVGEHSGYKHNTITYNGILRV-LARHESVRDFWNVVEEMKK-------EGYEMDIDTYIKISRQFQKFR-- 315 (639)
Q Consensus 246 ~~~A~~~f~~~~~~~~~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~g-- 315 (639)
...|+++|+...+...+.+-...-.....+ ++...+.+.|...|....+ .| ......-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 456777777765332222221222222233 4456778888888888766 44 2334444555555432
Q ss_pred ---CHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHH
Q 037477 316 ---MMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEA 392 (639)
Q Consensus 316 ---~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 392 (639)
+.+.|+.+|....+.|.. +.... +..+...|. +..+...|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~-~a~~~---------------------lg~~~~~g~---------------~~~d~~~A 347 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNP-DAQYL---------------------LGVLYETGT---------------KERDYRRA 347 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCc-hHHHH---------------------HHHHHHcCC---------------ccccHHHH
Confidence 455566666655544321 11110 000000000 12456677
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 037477 393 EKMMKAMKNAGFEPDNITYSQVIFGLC--KAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMM 470 (639)
Q Consensus 393 ~~~~~~m~~~g~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 470 (639)
.++|....+.|. ++..-+-+++-... -..+.+.|...+.+..+.| .|-..--...+..+.. +.++.+.-.+..+.
T Consensus 348 ~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a 424 (552)
T KOG1550|consen 348 FEYYSLAAKAGH-ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLA 424 (552)
T ss_pred HHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHH
Confidence 777777777662 22222222222211 2346677777777777766 2222222222333333 66666666666666
Q ss_pred HcCC
Q 037477 471 EKNY 474 (639)
Q Consensus 471 ~~g~ 474 (639)
+.|.
T Consensus 425 ~~g~ 428 (552)
T KOG1550|consen 425 ELGY 428 (552)
T ss_pred Hhhh
Confidence 6553
No 314
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=76.93 E-value=69 Score=30.41 Aligned_cols=56 Identities=11% Similarity=0.041 Sum_probs=29.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 037477 413 QVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKM 469 (639)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 469 (639)
.....|..+|.+.+|.++.+....... .+...|-.++..++..|+--.+..-++++
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 334455556666666665555554332 24445555556666666554454444444
No 315
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=76.80 E-value=0.88 Score=38.57 Aligned_cols=128 Identities=10% Similarity=0.058 Sum_probs=82.0
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 037477 379 IHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANE 458 (639)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~ 458 (639)
+|+.+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++. .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 6677778888999999999998776566788889999999999888888877762 122333557777788888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 037477 459 VDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARR 529 (639)
Q Consensus 459 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 529 (639)
++.+.-++.++-...- .+..+...++++.|.+++.+ .++...|..+++.|...+.
T Consensus 86 ~~~a~~Ly~~~~~~~~---------al~i~~~~~~~~~a~e~~~~-------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHDE---------ALEILHKLKDYEEAIEYAKK-------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHHHHCCTTHTT---------CSSTSSSTHCSCCCTTTGGG-------CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHHHHcccHHH---------HHHHHHHHccHHHHHHHHHh-------cCcHHHHHHHHHHHHhcCc
Confidence 8877777765433211 11113344555555533322 1234577777777666543
No 316
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=76.41 E-value=3.8 Score=24.42 Aligned_cols=22 Identities=14% Similarity=0.341 Sum_probs=12.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHH
Q 037477 300 DIDTYIKISRQFQKFRMMEDAV 321 (639)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~a~ 321 (639)
+...|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4555555555555555555553
No 317
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=76.08 E-value=7.6 Score=23.97 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 037477 445 TWTILIQGHCAANEVDRALLCFAKMM 470 (639)
Q Consensus 445 t~~~li~~~~~~g~~~~a~~~~~~m~ 470 (639)
+++.+...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 34444444444444444444444443
No 318
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=76.00 E-value=16 Score=32.88 Aligned_cols=77 Identities=13% Similarity=0.042 Sum_probs=57.4
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcC--CCCCCHHHHHHHHHH
Q 037477 268 TYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDG--PYKPSVQDCSLLLRS 345 (639)
Q Consensus 268 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--g~~p~~~~~~~ll~~ 345 (639)
|.+..|+.+.+.+.+++++.+.++-.+.. +.|..+-..++..||-.|+|++|..-++..-+. ...+...+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 45566778888999999999988877764 556777888999999999999998777655432 234455677776654
No 319
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=75.38 E-value=1.3e+02 Score=32.82 Aligned_cols=188 Identities=13% Similarity=0.143 Sum_probs=93.5
Q ss_pred HHHHHHHHHhccCCCCC--CHHHHHHHHHHHH-cCCChhHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHHhcCCHHH
Q 037477 248 KALGFFRWVGEHSGYKH--NTITYNGILRVLA-RHESVRDFWNVVEEMKKEGYEMDID-----TYIKISRQFQKFRMMED 319 (639)
Q Consensus 248 ~A~~~f~~~~~~~~~~p--~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~g~~p~~~-----~~~~li~~~~~~g~~~~ 319 (639)
-|++.++.+.++..+.| +..++--+...|. ...+++.|+..+++.....-.++.. .-..++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 35666666654555555 3445555555555 5677888888888664432222221 1223455555555444
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHH-HHHHHccCChhHHHHHHHH
Q 037477 320 AVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGI-HRALTKLGRFDEAEKMMKA 398 (639)
Q Consensus 320 a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~ 398 (639)
|....++..+.- ...+..+-...|.-+ +..+...++...|.+.++.
T Consensus 118 a~~~l~~~I~~~---------------------------------~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~ 164 (608)
T PF10345_consen 118 ALKNLDKAIEDS---------------------------------ETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQS 164 (608)
T ss_pred HHHHHHHHHHHH---------------------------------hccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 666666554320 000111111112222 2222222677777777776
Q ss_pred HHHCC---CCCCHHhHHHHHHHHH--hcCCHHHHHHHHHHHHHCCC---------CCCHHHHHHHHHHHH--HcCCHHHH
Q 037477 399 MKNAG---FEPDNITYSQVIFGLC--KAGRFEDACNVLDEMEENGC---------IPDIKTWTILIQGHC--AANEVDRA 462 (639)
Q Consensus 399 m~~~g---~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~---------~p~~~t~~~li~~~~--~~g~~~~a 462 (639)
+...- ..|-...+-.++.+.. +.+..+++.+.++++..... .|-..+|..+++.++ ..|+++.+
T Consensus 165 ~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~ 244 (608)
T PF10345_consen 165 IAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNS 244 (608)
T ss_pred HHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 65432 1333344444444443 34555666666666533211 234566666666554 45666666
Q ss_pred HHHHHHH
Q 037477 463 LLCFAKM 469 (639)
Q Consensus 463 ~~~~~~m 469 (639)
...++++
T Consensus 245 ~~~L~~l 251 (608)
T PF10345_consen 245 KQKLKQL 251 (608)
T ss_pred HHHHHHH
Confidence 6555544
No 320
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.17 E-value=40 Score=35.32 Aligned_cols=101 Identities=13% Similarity=0.132 Sum_probs=77.8
Q ss_pred HHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 037477 383 LTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRA 462 (639)
Q Consensus 383 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a 462 (639)
..+.|+++.|.++..+.. +..-|..|-++..+.|++..|.+.|..... |..|+-.+...|+.+..
T Consensus 647 al~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHH
Confidence 456788888888776643 667799999999999999999998877654 56677888888988877
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 037477 463 LLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEM 504 (639)
Q Consensus 463 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 504 (639)
..+-....+.|. .|....+|...|+++++.+++.+-
T Consensus 712 ~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 712 AVLASLAKKQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 776666676663 234445677889999999888754
No 321
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=73.03 E-value=12 Score=21.95 Aligned_cols=27 Identities=15% Similarity=0.221 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 037477 445 TWTILIQGHCAANEVDRALLCFAKMME 471 (639)
Q Consensus 445 t~~~li~~~~~~g~~~~a~~~~~~m~~ 471 (639)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344444455555555555555554444
No 322
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=72.54 E-value=26 Score=31.10 Aligned_cols=102 Identities=16% Similarity=0.098 Sum_probs=70.4
Q ss_pred HHHHcCCChhHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH-hH---HHHHhh
Q 037477 486 NGFLSQKRVNGAYKLLVEMIEKVRLRPW---QATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPE-PF---VQYISK 558 (639)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~---~~ll~~ 558 (639)
+-+.+.|++++|..-|.+..+...-.+. ...|..-..++.+.+.++.|++--.+.++. .|+.. .+ ..++.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--NPTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--CchhHHHHHHHHHHHHh
Confidence 3478899999999999998876322222 344555556778888999998877777763 34321 11 223356
Q ss_pred cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 037477 559 FGTVEDASEFLKALSVKEYPSSAAYLQVFES 589 (639)
Q Consensus 559 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 589 (639)
...+++|+.-++++.+..|.....-..++..
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 6889999999999999887777666555543
No 323
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=72.52 E-value=40 Score=28.36 Aligned_cols=91 Identities=18% Similarity=0.186 Sum_probs=68.3
Q ss_pred CCCCCCH--HHHHHHHHHHHcCCChhHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHhhcCC
Q 037477 260 SGYKHNT--ITYNGILRVLARHESVRDFWNVVEEMKKEGY-----EMDIDTYIKISRQFQKFRM-MEDAVKLFEFMMDGP 331 (639)
Q Consensus 260 ~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-----~p~~~~~~~li~~~~~~g~-~~~a~~l~~~m~~~g 331 (639)
.+..++. ...|.++.-....+++....++++.+..... ..+..+|.+++.+..+..- ---+..+|..|++.+
T Consensus 31 ~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~ 110 (145)
T PF13762_consen 31 ENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKND 110 (145)
T ss_pred cccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcC
Confidence 3444544 4568888888888889888888888744210 2356678899998876666 456788999999888
Q ss_pred CCCCHHHHHHHHHHHhhcC
Q 037477 332 YKPSVQDCSLLLRSISSIN 350 (639)
Q Consensus 332 ~~p~~~~~~~ll~~~~~~~ 350 (639)
.+++...|..+|.++.+..
T Consensus 111 ~~~t~~dy~~li~~~l~g~ 129 (145)
T PF13762_consen 111 IEFTPSDYSCLIKAALRGY 129 (145)
T ss_pred CCCCHHHHHHHHHHHHcCC
Confidence 8999999999999887764
No 324
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=72.11 E-value=8.3 Score=22.57 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 581 AAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 581 ~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
.+|..+...|...|++++|.+.|++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a 27 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKA 27 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56888999999999999999999884
No 325
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=71.63 E-value=1.1e+02 Score=30.16 Aligned_cols=20 Identities=5% Similarity=0.041 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhcCCHHHHHH
Q 037477 303 TYIKISRQFQKFRMMEDAVK 322 (639)
Q Consensus 303 ~~~~li~~~~~~g~~~~a~~ 322 (639)
+|..+..+.++.|.+++++.
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred HhccchhhhhhhHHHHHHHH
Confidence 44455555566666655543
No 326
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=70.72 E-value=41 Score=26.71 Aligned_cols=27 Identities=15% Similarity=0.272 Sum_probs=21.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037477 410 TYSQVIFGLCKAGRFEDACNVLDEMEE 436 (639)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 436 (639)
-|..|+..|...|..++|.+++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 378888888888888888888888776
No 327
>PHA02875 ankyrin repeat protein; Provisional
Probab=70.24 E-value=1.3e+02 Score=30.71 Aligned_cols=184 Identities=9% Similarity=0.019 Sum_probs=85.7
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhh
Q 037477 271 GILRVLARHESVRDFWNVVEEMKKEGYEMDID--TYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISS 348 (639)
Q Consensus 271 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~ 348 (639)
+.+...++.|+.+- .+.+.+.|..|+.. ...+.+...+..|+.+.+..+++.-....-..+..-.+.+..++.
T Consensus 37 tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~- 111 (413)
T PHA02875 37 SPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATI- 111 (413)
T ss_pred CHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHH-
Confidence 34555566777653 34445556554432 112345556677888776666653321111111111223332322
Q ss_pred cCCCchhHHHHHHHHHHhcCCCCChhh--HHHHHHHHHccCChhHHHHHHHHHHHCCCCCC---HHhHHHHHHHHHhcCC
Q 037477 349 INNPDLGLVFRVANKYESLGNSLSKSV--YDGIHRALTKLGRFDEAEKMMKAMKNAGFEPD---NITYSQVIFGLCKAGR 423 (639)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~ 423 (639)
.+. .++.+.+.+.|..++... -.+.+...+..|+.+-+..+ .+.|..++ ...++.|. ..+..|+
T Consensus 112 ~~~------~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L----l~~g~~~~~~d~~g~TpL~-~A~~~g~ 180 (413)
T PHA02875 112 LKK------LDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL----IDHKACLDIEDCCGCTPLI-IAMAKGD 180 (413)
T ss_pred hCC------HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HhcCCCCCCCCCCCCCHHH-HHHHcCC
Confidence 221 234444445555443221 12334445566776544444 34444332 22233333 3344566
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 037477 424 FEDACNVLDEMEENGCIPDIKTW---TILIQGHCAANEVDRALLCFAKMMEKNYDADA 478 (639)
Q Consensus 424 ~~~A~~~~~~m~~~~~~p~~~t~---~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 478 (639)
.+ +.+.+.+.|..++...- .+.+...+..|+.+ +.+.+.+.|..++.
T Consensus 181 ~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 181 IA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred HH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 54 44455666766654321 24444445666654 45555667766654
No 328
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=69.63 E-value=68 Score=27.10 Aligned_cols=53 Identities=8% Similarity=0.114 Sum_probs=38.7
Q ss_pred HcCCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC
Q 037477 277 ARHESVRDFWNVVEEMKKEG-YEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGP 331 (639)
Q Consensus 277 ~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g 331 (639)
...++.+++..+++.|.-.. -.+...++...+ +...|+|.+|.++|++..+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 34788999999999887652 122344555444 578899999999999998764
No 329
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.35 E-value=2e+02 Score=32.44 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 037477 303 TYIKISRQFQKFRMMEDAVKLFEFMMD 329 (639)
Q Consensus 303 ~~~~li~~~~~~g~~~~a~~l~~~m~~ 329 (639)
-|..|+..|...|+.++|++++.+..+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 467788888888888888888888866
No 330
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=68.84 E-value=40 Score=30.48 Aligned_cols=77 Identities=17% Similarity=0.110 Sum_probs=46.5
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHH
Q 037477 375 VYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENG--CIPDIKTWTILIQG 452 (639)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~t~~~li~~ 452 (639)
+.+..++.+.+.+.+.+|+....+-.+.. +.|...-..++..||-.|++++|..-++-.-... ..+-..+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34555666777777777777776666553 3445555667777777777777776665544321 12334556555553
No 331
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=67.96 E-value=17 Score=23.78 Aligned_cols=36 Identities=14% Similarity=0.080 Sum_probs=27.9
Q ss_pred HHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 037477 137 RNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILG 172 (639)
Q Consensus 137 ~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~ 172 (639)
....+.|-..++..++++|.+.|+..+...|..+++
T Consensus 10 ~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 10 LLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 334466777788888999998998888888877765
No 332
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=66.61 E-value=98 Score=27.76 Aligned_cols=99 Identities=16% Similarity=0.048 Sum_probs=65.3
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhc--
Q 037477 81 ELENKLEELSPKLTHESVVYVLRKLDNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKED-- 158 (639)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~-- 158 (639)
+++...+....+.+|.++.....+ -+=+.|++.|-.+... +.--++...-+|...|. ..+.+++..++....+.
T Consensus 96 ~l~~L~~~tk~S~dP~llYy~Wsr--~~d~~A~~~fL~~E~~-~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~ 171 (203)
T PF11207_consen 96 ELERLQEETKNSQDPYLLYYHWSR--FGDQEALRRFLQLEGT-PELETAELQYALATYYT-KRDPEKTIQLLLRALELSN 171 (203)
T ss_pred HHHHHHHHHccCCCccHHHHHhhc--cCcHHHHHHHHHHcCC-CCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcC
Confidence 445555566677777777666665 2336788888888773 33345566666666665 56777888877776653
Q ss_pred -CCCCCHHHHHHHHHHHHhcCchhhH
Q 037477 159 -HCYIEEETYLSILGVLKKAKKASDL 183 (639)
Q Consensus 159 -g~~~~~~t~~~ll~~~~~~~~~~~~ 183 (639)
+-.+|+..+.+|...+.+.|+.+.+
T Consensus 172 ~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 172 PDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3357788888888888888766544
No 333
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=66.58 E-value=30 Score=33.03 Aligned_cols=55 Identities=13% Similarity=0.109 Sum_probs=39.3
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCChHHHHHHHH
Q 037477 82 LENKLEELSPKLTHESVVYVLRKLDNDPEKASAFFNWVCDKKQFRPSSTVYSLMLR 137 (639)
Q Consensus 82 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~ 137 (639)
++..-.+-+...+.+.+..++....|++.+|...++.+.. .|-+-+...-+-++.
T Consensus 197 L~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsls~-~gk~It~~~~~e~~~ 251 (346)
T KOG0989|consen 197 LEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSLSL-LGKRITTSLVNEELA 251 (346)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhhc-cCcccchHHHHHHHh
Confidence 3333445567889999999999989999999999999887 554455333333333
No 334
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=65.07 E-value=1e+02 Score=27.52 Aligned_cols=198 Identities=19% Similarity=0.117 Sum_probs=109.7
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHC-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HH
Q 037477 376 YDGIHRALTKLGRFDEAEKMMKAMKNA-GFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQ-GH 453 (639)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~-~~ 453 (639)
+......+...+++..+...+...... ........+......+...+.+..+...+.........+ ......... .+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 140 (291)
T COG0457 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHH
Confidence 344455555666666666666555431 123344455555566666666777777777666543332 122222222 56
Q ss_pred HHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCH
Q 037477 454 CAANEVDRALLCFAKMMEKNY--DADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRP-WQATFKTLIEKLLGARRL 530 (639)
Q Consensus 454 ~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~ 530 (639)
...|+++.+...+.+...... ......+......+...++.+.+...+...... ... ....+..+-..+...+++
T Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 141 YELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcccH
Confidence 677777777777777654211 112333333344456667777777777777654 122 245566666667777777
Q ss_pred HHHHHHHHHHHhCCCCCC----hHhHHHHHhhcCCHHHHHHHHHHhhcCCCC
Q 037477 531 EEAMNLLRLMKKQNYPPF----PEPFVQYISKFGTVEDASEFLKALSVKEYP 578 (639)
Q Consensus 531 ~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~g~~~~a~~~~~~~~~~~~~ 578 (639)
+.|...+....... |+ .......+...+..+.+...+.......+.
T Consensus 219 ~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 219 EEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 77777777776532 22 111222223455677777777776665443
No 335
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=64.51 E-value=22 Score=20.55 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=10.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 037477 447 TILIQGHCAANEVDRALLCFAKMME 471 (639)
Q Consensus 447 ~~li~~~~~~g~~~~a~~~~~~m~~ 471 (639)
..+...+...|++++|.+.|++.++
T Consensus 5 ~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 5 YYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 336
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=64.37 E-value=88 Score=29.56 Aligned_cols=88 Identities=11% Similarity=0.026 Sum_probs=54.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----
Q 037477 414 VIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFL---- 489 (639)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~---- 489 (639)
=|.+++..|++.++....-+--+.--+........-|-.|.+.|+...+.++-..-...--.-+..-|..+...|.
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 3677788888888776554443332223445566666777888888877777777666322223334666555443
Q ss_pred -cCCChhHHHHHH
Q 037477 490 -SQKRVNGAYKLL 501 (639)
Q Consensus 490 -~~g~~~~A~~~~ 501 (639)
=.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 457888887776
No 337
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=64.17 E-value=1.1e+02 Score=27.43 Aligned_cols=96 Identities=14% Similarity=0.142 Sum_probs=63.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 037477 451 QGHCAANEVDRALLCFAKMMEKNYDAD----ADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW-QATFKTLIEKLL 525 (639)
Q Consensus 451 ~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~ 525 (639)
.-+.+.|++++|..-|.+.++.-.... ...|..-..++.+.+.++.|+.--....+ +.|+ ......-..+|.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie---l~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE---LNPTYEKALERRAEAYE 179 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh---cCchhHHHHHHHHHHHH
Confidence 457889999999999999998632222 22333334567788888888876665554 3442 111122235788
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChHh
Q 037477 526 GARRLEEAMNLLRLMKKQNYPPFPEP 551 (639)
Q Consensus 526 ~~g~~~~A~~~~~~m~~~~~~p~~~~ 551 (639)
+..++++|++=|+.+.+. .|...-
T Consensus 180 k~ek~eealeDyKki~E~--dPs~~e 203 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILES--DPSRRE 203 (271)
T ss_pred hhhhHHHHHHHHHHHHHh--CcchHH
Confidence 888999999999999874 354433
No 338
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=64.11 E-value=91 Score=31.75 Aligned_cols=118 Identities=8% Similarity=0.060 Sum_probs=57.9
Q ss_pred hcCCHHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHH
Q 037477 420 KAGRFEDACN-VLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAY 498 (639)
Q Consensus 420 ~~g~~~~A~~-~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 498 (639)
..|++-.|-+ ++.-+....-.|+.+...+.| +...|+++.+.+.+...... +.....+..+++....+.|++++|+
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 3555555443 334444433334444333333 34566666666666544332 2234455566666666666677776
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 499 KLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 499 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
.+-.-|... .+. +..........--..|-++++.-.|+....
T Consensus 378 s~a~~~l~~-eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 378 STAEMMLSN-EIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHHHhcc-ccC-ChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 666666543 222 111222211222334556666666666554
No 339
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=64.02 E-value=1e+02 Score=29.12 Aligned_cols=90 Identities=17% Similarity=0.212 Sum_probs=52.5
Q ss_pred HHHHHcCCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcC
Q 037477 273 LRVLARHESVRDFWNVVEEMKKE--GYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSIN 350 (639)
Q Consensus 273 i~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~ 350 (639)
|.+++..|++.+++...-+--+. .++|.+ ...-|-.|.+.+.+..+.++-....+..-.-+...|.++...|
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELy---- 163 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELY---- 163 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHH----
Confidence 56777778888776655444332 234333 3344445778888887777776665542222222344433322
Q ss_pred CCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHH
Q 037477 351 NPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMM 396 (639)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 396 (639)
+.+.+.-.|.+++|+++.
T Consensus 164 ----------------------------Ll~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 164 ----------------------------LLHVLLPLGHFSEAEELV 181 (309)
T ss_pred ----------------------------HHHHHhccccHHHHHHHH
Confidence 445566678888888776
No 340
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=63.74 E-value=16 Score=23.42 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=18.5
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCC
Q 037477 272 ILRVLARHESVRDFWNVVEEMKKEG 296 (639)
Q Consensus 272 li~~~~~~g~~~~a~~~~~~m~~~g 296 (639)
+..+|...|+.+.|.++++++...|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5567777888888888888777554
No 341
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=63.64 E-value=1.4e+02 Score=28.51 Aligned_cols=115 Identities=9% Similarity=0.053 Sum_probs=69.4
Q ss_pred hhHHHHHHHHHHH-CCCCCCHHhHHHHHHHHHh-cCC-HHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 037477 389 FDEAEKMMKAMKN-AGFEPDNITYSQVIFGLCK-AGR-FEDACNVLDEMEE-NGCIPDIKTWTILIQGHCAANEVDRALL 464 (639)
Q Consensus 389 ~~~A~~~~~~m~~-~g~~~~~~~~~~li~~~~~-~g~-~~~A~~~~~~m~~-~~~~p~~~t~~~li~~~~~~g~~~~a~~ 464 (639)
+-+|+++|+.... ..+--|..+...+++.... .+. ...-.++.+-+.. .|-.++..+...+|..++..+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4456666653221 2233456666666666655 222 2222233333332 2345677777788888888888888888
Q ss_pred HHHHHHHc-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 037477 465 CFAKMMEK-NYDADADLLDVLINGFLSQKRVNGAYKLLVE 503 (639)
Q Consensus 465 ~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 503 (639)
+|+..... +..-|...|..+|+.....|+..-..++.++
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 88777664 5556777788888888888887666666553
No 342
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=63.52 E-value=1e+02 Score=27.04 Aligned_cols=49 Identities=8% Similarity=0.037 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHhccCCCCCCH------HHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 037477 246 PVKALGFFRWVGEHSGYKHNT------ITYNGILRVLARHESVRDFWNVVEEMKK 294 (639)
Q Consensus 246 ~~~A~~~f~~~~~~~~~~p~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~ 294 (639)
.+.|+.+++.+.++...+-+. ..--..+..|.+.|.+++|.++++....
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 345777777775443321010 0112223456666666666666666554
No 343
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=62.51 E-value=25 Score=20.43 Aligned_cols=26 Identities=23% Similarity=0.174 Sum_probs=12.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 037477 446 WTILIQGHCAANEVDRALLCFAKMME 471 (639)
Q Consensus 446 ~~~li~~~~~~g~~~~a~~~~~~m~~ 471 (639)
|..+...|...|++++|.+.|++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444444555555555555544443
No 344
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=62.25 E-value=6.7 Score=22.66 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=16.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 583 YLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 583 ~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
+-.+..+|.+.|++++|.+.|+++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~ 26 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRL 26 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHH
Confidence 345666777777777777777765
No 345
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=62.06 E-value=1.5e+02 Score=28.19 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=32.3
Q ss_pred HHHHhccCChHHHHHHHHHHHhcCCCCCHHHH-------HHHHHHHHhcCchhhH
Q 037477 136 LRNLVNKDSLKQFWVTLRRMKEDHCYIEEETY-------LSILGVLKKAKKASDL 183 (639)
Q Consensus 136 i~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~-------~~ll~~~~~~~~~~~~ 183 (639)
.+...+.++.++|+..|.+....|+..|..+. ..+...|...|+..+.
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l 64 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSL 64 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchH
Confidence 34556677888888888888888877766554 3455566666655444
No 346
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=61.87 E-value=1.5e+02 Score=28.37 Aligned_cols=108 Identities=13% Similarity=0.102 Sum_probs=52.5
Q ss_pred hhHHHHHhcC-CcHHHHHHHhhhCCCCCHHHHHHHHHhc--------C-------CChHHHHHHHHHHhhcCCCCCChHH
Q 037477 68 SSLELILACD-WSDELENKLEELSPKLTHESVVYVLRKL--------D-------NDPEKASAFFNWVCDKKQFRPSSTV 131 (639)
Q Consensus 68 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~l~~~--------~-------~~~~~A~~~f~~~~~~~~~~~~~~~ 131 (639)
.+++.+.... -...+.+.++..+..++...+-.++-.. . |+..--..+|+.=++...+.|.+..
T Consensus 34 a~vq~~~~~~gdle~vak~ldssg~~l~~~rYgd~~fdil~~gg~~~pg~~~sddge~~t~~cvfda~e~~E~i~~~~qv 113 (412)
T KOG2297|consen 34 AVVQGLEDNAGDLELVAKSLDSSGNDLDYRRYGDILFDILFAGGRLQPGGVKSDDGERHTSYCVFDAEEKREAIRNSVQV 113 (412)
T ss_pred HHHHHHHhcCccHHHHHHHHHhccccccHHHHHHHHHHHHHHhcccCCCCccccccCccCceeEeecCchHHHHHHHHHH
Confidence 3444444433 3345667777777777665554443321 1 1111112233322222223356777
Q ss_pred HHHHHHHHhc--cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 037477 132 YSLMLRNLVN--KDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKA 177 (639)
Q Consensus 132 ~~~li~~~~~--~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~ 177 (639)
++-+|+-|.- .+--++...++.-+ .|+.++...-.+++.+..-.
T Consensus 114 f~KliRRykyLeK~fE~e~~k~Llfl--k~F~e~Er~KLA~~Tal~l~ 159 (412)
T KOG2297|consen 114 FQKLIRRYKYLEKNFENEMRKFLLFL--KLFEENERKKLAMLTALLLS 159 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HccCHHHHHHHHHHHHHHHh
Confidence 7878776542 22222333333222 35667777777777765544
No 347
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=61.47 E-value=18 Score=23.19 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=12.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 037477 520 LIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 520 li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
+..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555554
No 348
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.23 E-value=1.4e+02 Score=27.58 Aligned_cols=19 Identities=5% Similarity=0.172 Sum_probs=14.5
Q ss_pred hhcCCHHHHHHHHHHhhcC
Q 037477 557 SKFGTVEDASEFLKALSVK 575 (639)
Q Consensus 557 ~~~g~~~~a~~~~~~~~~~ 575 (639)
+.++++..|+.+|+++...
T Consensus 165 a~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4667888888888887655
No 349
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=60.55 E-value=1.2e+02 Score=26.68 Aligned_cols=63 Identities=19% Similarity=0.207 Sum_probs=34.5
Q ss_pred CCCH-HHHHHHHHHHHcCC----C-------hhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 475 DADA-DLLDVLINGFLSQK----R-------VNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 475 ~~~~-~~~~~li~~~~~~g----~-------~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
.|+. .++..+-.+|...+ + +++|...|+...+ ..|+..+|+.-++... +|-++..++.+
T Consensus 65 ~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~---~~P~ne~Y~ksLe~~~------kap~lh~e~~~ 135 (186)
T PF06552_consen 65 NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD---EDPNNELYRKSLEMAA------KAPELHMEIHK 135 (186)
T ss_dssp -TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH---H-TT-HHHHHHHHHHH------THHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh---cCCCcHHHHHHHHHHH------hhHHHHHHHHH
Confidence 4443 45555555554433 2 4455555555544 4788888888887653 46667777766
Q ss_pred CCCC
Q 037477 543 QNYP 546 (639)
Q Consensus 543 ~~~~ 546 (639)
++..
T Consensus 136 ~~~~ 139 (186)
T PF06552_consen 136 QGLG 139 (186)
T ss_dssp SSS-
T ss_pred HHhh
Confidence 5543
No 350
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.12 E-value=1.5e+02 Score=27.59 Aligned_cols=202 Identities=14% Similarity=0.158 Sum_probs=111.5
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037477 375 VYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHC 454 (639)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~ 454 (639)
.|.-...+|-...++++|...+.+..+. .+-+...|. ....++.|.-+.++|.+.. --+..|+-....|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kls--Evvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLS--EVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHH
Confidence 4666666777778888877766655422 122222222 1234456666666666531 12345677777888
Q ss_pred HcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcC
Q 037477 455 AANEVDRALLCFAKMME--KNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKV----RLRPWQATFKTLIEKLLGAR 528 (639)
Q Consensus 455 ~~g~~~~a~~~~~~m~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~p~~~~~~~li~~~~~~g 528 (639)
.+|..+-|-..+++.-+ .++.| ++|+.+|++..... ...--...|...-+.+.+..
T Consensus 103 E~GspdtAAmaleKAak~lenv~P------------------d~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~ 164 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKALENVKP------------------DDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLE 164 (308)
T ss_pred HhCCcchHHHHHHHHHHHhhcCCH------------------HHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhH
Confidence 88888877777766544 23344 44444444332210 00111234455556677777
Q ss_pred CHHHHHHHHHHHHh----CCCCCCh-HhHHH-HH--hhcCCHHHHHHHHHHhhcC----CCCCHHHHHHHHHHHHhcCCH
Q 037477 529 RLEEAMNLLRLMKK----QNYPPFP-EPFVQ-YI--SKFGTVEDASEFLKALSVK----EYPSSAAYLQVFESFFNEGRH 596 (639)
Q Consensus 529 ~~~~A~~~~~~m~~----~~~~p~~-~~~~~-ll--~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~ 596 (639)
++++|-..+.+-.. -.-.++. ..+.. ++ ....++..|+..++.-.+. .+.+..+...|+.+|- .|+.
T Consensus 165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~ 243 (308)
T KOG1585|consen 165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDI 243 (308)
T ss_pred HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCH
Confidence 77777665544321 1111222 11222 22 2446888899998874433 4556777888888874 6787
Q ss_pred HHHHHHHhh
Q 037477 597 YEAKDLLYK 605 (639)
Q Consensus 597 ~~A~~~~~~ 605 (639)
+++.++..-
T Consensus 244 E~~~kvl~s 252 (308)
T KOG1585|consen 244 EEIKKVLSS 252 (308)
T ss_pred HHHHHHHcC
Confidence 888777654
No 351
>PF13934 ELYS: Nuclear pore complex assembly
Probab=59.98 E-value=1.4e+02 Score=27.48 Aligned_cols=132 Identities=19% Similarity=0.219 Sum_probs=71.2
Q ss_pred HHHHHHHHH--cCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHhh
Q 037477 481 LDVLINGFL--SQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYISK 558 (639)
Q Consensus 481 ~~~li~~~~--~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 558 (639)
|..+++++. ..+++++|.+.+-+- .+.|+ .-..++.++...|+.+.|+.++..+.-....++..+....+..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p----s~~~~--~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~La 152 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP----SLIPW--FPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVALA 152 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC----CCCcc--cHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 444555543 446666776666321 33343 2234667777778888888777765432222222222222356
Q ss_pred cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCccccCChhHHHhh
Q 037477 559 FGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHHIRQDSKISLLF 620 (639)
Q Consensus 559 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~ 620 (639)
++.+.+|..+-+...+.. ....+..++..+..........+.+-.+|-......++..++
T Consensus 153 ~~~v~EAf~~~R~~~~~~--~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~EE~~l~~~L 212 (226)
T PF13934_consen 153 NGLVTEAFSFQRSYPDEL--RRRLFEQLLEHCLEECARSGRLDELLSLPLDEEEEQWLEKYL 212 (226)
T ss_pred cCCHHHHHHHHHhCchhh--hHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChHHHHHHHHHH
Confidence 688888887766665531 245666677666654433334444445555555555444433
No 352
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=59.94 E-value=28 Score=25.58 Aligned_cols=45 Identities=18% Similarity=0.149 Sum_probs=18.7
Q ss_pred CCChhHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 037477 491 QKRVNGAYKLLVEMIEKVRLRPW-QATFKTLIEKLLGARRLEEAMN 535 (639)
Q Consensus 491 ~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~ 535 (639)
..+.++|+..|....++..-.|+ -.+...++.+|+..|+++++++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443111111 1234444455555555444444
No 353
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=59.70 E-value=28 Score=25.59 Aligned_cols=51 Identities=22% Similarity=0.244 Sum_probs=33.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCChhHHHHHH
Q 037477 450 IQGHCAANEVDRALLCFAKMMEKNYDAD--ADLLDVLINGFLSQKRVNGAYKLL 501 (639)
Q Consensus 450 i~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~ 501 (639)
+..| ...+.++|+..|...++.-..+. -.++..|+.+|+..|++.+++++-
T Consensus 14 lkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 14 LKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3434 66677788888888777533322 245667777888888887777654
No 354
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=59.52 E-value=25 Score=33.45 Aligned_cols=47 Identities=13% Similarity=0.235 Sum_probs=29.4
Q ss_pred CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHH
Q 037477 510 LRPWQAT-FKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYI 556 (639)
Q Consensus 510 ~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 556 (639)
+.|+..+ |+..|+.-.+.|++++|+.++++..+.|+.--..+|...+
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 3444433 4466666777777777777777777777666555665544
No 355
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=58.88 E-value=38 Score=22.14 Aligned_cols=33 Identities=12% Similarity=0.222 Sum_probs=20.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChHhHHHHHhh
Q 037477 526 GARRLEEAMNLLRLMKKQNYPPFPEPFVQYISK 558 (639)
Q Consensus 526 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 558 (639)
+.|-..++..++++|.+.|+..+...+..++..
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 446666666666666666666666655555543
No 356
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=58.83 E-value=24 Score=31.60 Aligned_cols=53 Identities=23% Similarity=0.273 Sum_probs=40.6
Q ss_pred CCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhc
Q 037477 106 DNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKED 158 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~ 158 (639)
..+.+......+|+.+.....|++..|..++..+...|+.++|.+..+++...
T Consensus 121 ~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 121 PPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45666666666776665566788888888888888888888888888777754
No 357
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=55.59 E-value=72 Score=30.92 Aligned_cols=53 Identities=11% Similarity=0.056 Sum_probs=35.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 037477 451 QGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEM 504 (639)
Q Consensus 451 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 504 (639)
.-|.++|.+++|.++|..-+... +-|.+++..-..+|.+..++..|..--...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A 157 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAA 157 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHH
Confidence 56777888888888887766542 226677766677777777776665544433
No 358
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=55.53 E-value=92 Score=25.40 Aligned_cols=46 Identities=7% Similarity=0.159 Sum_probs=32.0
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 037477 462 ALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 462 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (639)
..+-++.+...++.|+......-+.+|.+.+++..|.++|+.++.+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4445555666667777777777777777777777777777777665
No 359
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=55.39 E-value=42 Score=27.55 Aligned_cols=41 Identities=22% Similarity=0.191 Sum_probs=22.3
Q ss_pred HHHHHHHHhhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHh
Q 037477 564 DASEFLKALSVK--EYPSSAAYLQVFESFFNEGRHYEAKDLLY 604 (639)
Q Consensus 564 ~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 604 (639)
++.++|+.|... ....+.-|..-...+...|++++|.++++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555543 34455555555555666666666665554
No 360
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=55.10 E-value=66 Score=28.78 Aligned_cols=32 Identities=22% Similarity=0.173 Sum_probs=17.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 511 RPWQATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 511 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
.|+...|..++.++...|+.++|.++..++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555555555555555555555555544
No 361
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=55.00 E-value=35 Score=23.83 Aligned_cols=25 Identities=36% Similarity=0.671 Sum_probs=13.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 037477 411 YSQVIFGLCKAGRFEDACNVLDEME 435 (639)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~ 435 (639)
.-.+|.+|...|++++|.+..+++.
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3345566666666666666555554
No 362
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=54.79 E-value=61 Score=26.57 Aligned_cols=40 Identities=18% Similarity=0.139 Sum_probs=21.0
Q ss_pred HHHHHHHhhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHh
Q 037477 565 ASEFLKALSVK--EYPSSAAYLQVFESFFNEGRHYEAKDLLY 604 (639)
Q Consensus 565 a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 604 (639)
..++|..|... ....+.-|......+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44455555444 33344445555555556666666666554
No 363
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=54.47 E-value=1.5e+02 Score=27.27 Aligned_cols=72 Identities=14% Similarity=0.182 Sum_probs=38.5
Q ss_pred cCcCCHHHHHHHHHHhccChHHHHHHHHHHhccCCC-----------CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHC
Q 037477 227 KIELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGY-----------KHNTITYNGILRVLARHESVRDFWNVVEEMKKE 295 (639)
Q Consensus 227 ~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~-----------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 295 (639)
+++++.+.+..++....|+..+|+..++.-....|. .|.......++..|. .+++++|.++++++.+.
T Consensus 189 kv~yt~dgLeaiifta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~l 267 (333)
T KOG0991|consen 189 KVNYTDDGLEAIIFTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKL 267 (333)
T ss_pred CCCCCcchHHHhhhhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHc
Confidence 456666777666666667777776666544322221 334444444444433 23555555555555555
Q ss_pred CCCC
Q 037477 296 GYEM 299 (639)
Q Consensus 296 g~~p 299 (639)
|..|
T Consensus 268 gysp 271 (333)
T KOG0991|consen 268 GYSP 271 (333)
T ss_pred CCCH
Confidence 5443
No 364
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=53.87 E-value=2.8e+02 Score=28.84 Aligned_cols=55 Identities=9% Similarity=0.080 Sum_probs=36.1
Q ss_pred HHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHhhC
Q 037477 552 FVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFN--EGRHYEAKDLLYKC 606 (639)
Q Consensus 552 ~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~m 606 (639)
|...+-..|-.+.|...+..+...-|++...|..++..=.. .-+...+.++++.|
T Consensus 466 ~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a 522 (568)
T KOG2396|consen 466 YLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRA 522 (568)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHH
Confidence 33444566778888888888887777777777777654321 22366666777766
No 365
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=53.45 E-value=87 Score=34.59 Aligned_cols=78 Identities=13% Similarity=0.047 Sum_probs=47.0
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHhcCCChHHHHHHHHHHhhcCCCC------------CChHHHHHHHHHHhccCChHHHH
Q 037477 82 LENKLEELSPKLTHESVVYVLRKLDNDPEKASAFFNWVCDKKQFR------------PSSTVYSLMLRNLVNKDSLKQFW 149 (639)
Q Consensus 82 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~------------~~~~~~~~li~~~~~~~~~~~a~ 149 (639)
++..+..-+..++.+.+..+.+...|++.+|+.+++.+....+-. .+......++..+. .+++..++
T Consensus 187 L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL~-~~d~~~~l 265 (830)
T PRK07003 187 LERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDALA-AGDGPEIL 265 (830)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHHH-cCCHHHHH
Confidence 344444456677888888777777899999999988765421101 12222333333333 36666777
Q ss_pred HHHHHHHhcCC
Q 037477 150 VTLRRMKEDHC 160 (639)
Q Consensus 150 ~l~~~m~~~g~ 160 (639)
.++++|...|.
T Consensus 266 ~~~~~l~~~g~ 276 (830)
T PRK07003 266 AVADEMALRSL 276 (830)
T ss_pred HHHHHHHHhCC
Confidence 77777766664
No 366
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=53.36 E-value=15 Score=30.11 Aligned_cols=31 Identities=16% Similarity=0.176 Sum_probs=23.4
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 037477 142 KDSLKQFWVTLRRMKEDHCYIEEETYLSILGVL 174 (639)
Q Consensus 142 ~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~ 174 (639)
.|.-..|..+|++|.+.|-+||. |+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 35566788999999999998875 56666543
No 367
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=53.34 E-value=3.2e+02 Score=29.48 Aligned_cols=92 Identities=7% Similarity=-0.070 Sum_probs=38.4
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 037477 376 YDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCA 455 (639)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~ 455 (639)
|..-+.-+..+++.. ....+.+..+-.-.+...-.-++..|.+.|-.+.|.++.+.+-.+-. ...-|..-+..+.+
T Consensus 375 W~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~r 450 (566)
T PF07575_consen 375 WQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIR 450 (566)
T ss_dssp HHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHH
Confidence 444444444433322 33444443332233455566677888888888888888777654322 22345666666777
Q ss_pred cCCHHHHHHHHHHHHH
Q 037477 456 ANEVDRALLCFAKMME 471 (639)
Q Consensus 456 ~g~~~~a~~~~~~m~~ 471 (639)
+|+...+..+-+.+.+
T Consensus 451 a~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 451 AGDYSLVTRIADRLLE 466 (566)
T ss_dssp ----------------
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7777666665555553
No 368
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=53.23 E-value=2.3e+02 Score=27.82 Aligned_cols=120 Identities=13% Similarity=0.088 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc---CCChhHHHHH
Q 037477 424 FEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLS---QKRVNGAYKL 500 (639)
Q Consensus 424 ~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~---~g~~~~A~~~ 500 (639)
.+.-+.++++..+.+. -+...+..+|..+.+..+.+...+.|+++.... +-+...|...|+.... .-.++....+
T Consensus 47 ~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 3455667777666643 356667777777788888888888888887763 2256666666654433 2345555555
Q ss_pred HHHHHHhC-----CC------CCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 037477 501 LVEMIEKV-----RL------RPW-----QATFKTLIEKLLGARRLEEAMNLLRLMKKQNY 545 (639)
Q Consensus 501 ~~~m~~~~-----~~------~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 545 (639)
|.+..+.. +. .++ ...+..+...+.++|..+.|..+++-+.+.++
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 55443321 11 011 12233333444568899999999988887554
No 369
>PRK11619 lytic murein transglycosylase; Provisional
Probab=53.12 E-value=3.5e+02 Score=29.76 Aligned_cols=271 Identities=13% Similarity=0.083 Sum_probs=138.3
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 037477 263 KHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLL 342 (639)
Q Consensus 263 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l 342 (639)
+.....-...+..+++.+++....+.+.. .+.+...-.....+....|+.++|......+=..| ......++.+
T Consensus 96 P~~~~Lr~~~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l 169 (644)
T PRK11619 96 PPARSLQSRFVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKL 169 (644)
T ss_pred chHHHHHHHHHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHH
Confidence 33334444455566777777777663211 14455556677778888888777766555553322 1123334444
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhc
Q 037477 343 LRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDN-ITYSQVIFGLCKA 421 (639)
Q Consensus 343 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~ 421 (639)
++.+ .+.|.-.+...+.. +......|+...|..+...+. ++. .....++..+.+.
T Consensus 170 ~~~~------------------~~~g~lt~~d~w~R-~~~al~~~~~~lA~~l~~~l~-----~~~~~~a~a~~al~~~p 225 (644)
T PRK11619 170 FSVW------------------QQSGKQDPLAYLER-IRLAMKAGNTGLVTYLAKQLP-----ADYQTIASALIKLQNDP 225 (644)
T ss_pred HHHH------------------HHcCCCCHHHHHHH-HHHHHHCCCHHHHHHHHHhcC-----hhHHHHHHHHHHHHHCH
Confidence 4443 33333333334444 334456678888877776652 222 2233344433332
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHcC-CCCCH--HHHHHHHHHHHcCCChhH
Q 037477 422 GRFEDACNVLDEMEENGCIPDIKTWTILIQGHC--AANEVDRALLCFAKMMEKN-YDADA--DLLDVLINGFLSQKRVNG 496 (639)
Q Consensus 422 g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~--~~g~~~~a~~~~~~m~~~g-~~~~~--~~~~~li~~~~~~g~~~~ 496 (639)
..+...+.. +.|+...-..++.++. ...+.+.|..++....... +.+.. .+...+.......+..++
T Consensus 226 ---~~~~~~~~~-----~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~ 297 (644)
T PRK11619 226 ---NTVETFART-----TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDE 297 (644)
T ss_pred ---HHHHHHhhc-----cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHH
Confidence 222222221 1123322222222222 3456688888888875543 32222 223333333333332566
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CChHhH-HHHHhhcCCHHHHHHHHHHhhc
Q 037477 497 AYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYP-PFPEPF-VQYISKFGTVEDASEFLKALSV 574 (639)
Q Consensus 497 A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~-~~ll~~~g~~~~a~~~~~~~~~ 574 (639)
+...++..... ..+......-+..-.+.++++.+...+..|....-. +...-| ...+...|+.++|..+|+.+..
T Consensus 298 a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 298 QAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 77777654432 123344455555556888998888888887542211 111111 1112356999999999888754
No 370
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=52.80 E-value=1.2e+02 Score=24.18 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 037477 303 TYIKISRQFQKFRMMEDAVKLFEFMMD 329 (639)
Q Consensus 303 ~~~~li~~~~~~g~~~~a~~l~~~m~~ 329 (639)
-|..++..|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 478888888888999999988888876
No 371
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=52.65 E-value=2.1e+02 Score=27.20 Aligned_cols=73 Identities=7% Similarity=0.190 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH----CCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHhhcCCC
Q 037477 260 SGYKHNTITYNGILRVLARHESVRDFWNVVEEMKK----EGYEMDIDTYI-KISRQFQKFRMMEDAVKLFEFMMDGPY 332 (639)
Q Consensus 260 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~~~~~~-~li~~~~~~g~~~~a~~l~~~m~~~g~ 332 (639)
.|-.--...+-.+...|++.++.+.+.+..++..+ .|.+.|+..-- .+.-.|....-.++.++..+.|.+.|.
T Consensus 109 ngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGg 186 (412)
T COG5187 109 NGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGG 186 (412)
T ss_pred ccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC
Confidence 33334566777788888888888888777766544 35555543222 122233333345666677777766653
No 372
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=52.47 E-value=2.1e+02 Score=27.09 Aligned_cols=82 Identities=17% Similarity=0.174 Sum_probs=40.1
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037477 372 SKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQ 451 (639)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~ 451 (639)
++.....+...|.+.|++.+|+..|-.-. .++...+..++.-....|...++ |... ...+-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~----~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi-~RaVL 149 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGT----DPSAFAYVMLLEEWSTKGYPSEA--------------DLFI-ARAVL 149 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-----HHHHHHHHHHHHHHHHHTSS--H--------------HHHH-HHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcC----ChhHHHHHHHHHHHHHhcCCcch--------------hHHH-HHHHH
Confidence 45566667777888888877776653221 22222222233222222222221 2222 22334
Q ss_pred HHHHcCCHHHHHHHHHHHHHc
Q 037477 452 GHCAANEVDRALLCFAKMMEK 472 (639)
Q Consensus 452 ~~~~~g~~~~a~~~~~~m~~~ 472 (639)
.|.-.++...|...++...+.
T Consensus 150 ~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 150 QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 456667777777777666554
No 373
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=52.33 E-value=1.1e+02 Score=23.83 Aligned_cols=59 Identities=15% Similarity=0.334 Sum_probs=37.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 037477 416 FGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLL 481 (639)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 481 (639)
..+...|++++|..+.+.+ ..||...|-.+.. .+.|..+++..-+.+|...| .|....|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 3455677888887766655 3577777766654 36677776666676777666 4444433
No 374
>PRK11619 lytic murein transglycosylase; Provisional
Probab=52.11 E-value=3.6e+02 Score=29.64 Aligned_cols=237 Identities=8% Similarity=-0.023 Sum_probs=117.9
Q ss_pred cHHHHHHHhhhCCCCCHHHHHHH-HHhc--CCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHH
Q 037477 79 SDELENKLEELSPKLTHESVVYV-LRKL--DNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRM 155 (639)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~~~~-l~~~--~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m 155 (639)
..++...|+..+..+-...+... +..+ .+++..-++++. . .+.+...-.....++...|+.++|....+.+
T Consensus 82 ~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~---~---~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~l 155 (644)
T PRK11619 82 AVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSP---E---KPKPVEARCNYYYAKWATGQQQEAWQGAKEL 155 (644)
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcC---C---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34566667766655544443332 2222 345554444221 1 1246666677888888899988888888888
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhhccchhHHHHHHH---------------HHhcCCchHHHH
Q 037477 156 KEDHCYIEEETYLSILGVLKKAKKASDLAALNQFHDGMVKEIAMDNVAKTLVD---------------VVLGSDWDDKIG 220 (639)
Q Consensus 156 ~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---------------~~~~~~~~~~~~ 220 (639)
-..|- ..+..+..++..+.+.|...+.....++-..+ ..+. ......+.. ++.+... +.
T Consensus 156 W~~g~-~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al-~~~~-~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~---~~ 229 (644)
T PRK11619 156 WLTGK-SLPNACDKLFSVWQQSGKQDPLAYLERIRLAM-KAGN-TGLVTYLAKQLPADYQTIASALIKLQNDPNT---VE 229 (644)
T ss_pred hccCC-CCChHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCC-HHHHHHHHHhcChhHHHHHHHHHHHHHCHHH---HH
Confidence 77774 34677888999988877665544333322222 1111 111222222 2211111 11
Q ss_pred HHHhhcc-CcCCHHHHHHHHH-HhccChHHHHHHHHHHhccCCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHHCC
Q 037477 221 KKLEDMK-IELSDNFVLTVLK-ELRIYPVKALGFFRWVGEHSGYKHN--TITYNGILRVLARHESVRDFWNVVEEMKKEG 296 (639)
Q Consensus 221 ~~~~~~~-~~~~~~~~~~~l~-~~~~~~~~A~~~f~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 296 (639)
......+ ...........+. ..+.+++.|...+.......++.+. ...+..+.......+..+++...++......
T Consensus 230 ~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~ 309 (644)
T PRK11619 230 TFARTTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS 309 (644)
T ss_pred HHhhccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc
Confidence 1111111 1111222223333 2356677777777766434433332 2334444444444333555655555543332
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 037477 297 YEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMD 329 (639)
Q Consensus 297 ~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 329 (639)
.+......-+..-...++++.+...+..|..
T Consensus 310 --~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~ 340 (644)
T PRK11619 310 --QSTSLLERRVRMALGTGDRRGLNTWLARLPM 340 (644)
T ss_pred --CCcHHHHHHHHHHHHccCHHHHHHHHHhcCH
Confidence 2333334444444567777777777777643
No 375
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=50.82 E-value=32 Score=19.40 Aligned_cols=29 Identities=24% Similarity=0.211 Sum_probs=18.3
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 037477 560 GTVEDASEFLKALSVKEYPSSAAYLQVFE 588 (639)
Q Consensus 560 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 588 (639)
|+.+.|..+|+++....+.+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45566777777776666666666665543
No 376
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=49.97 E-value=1.6e+02 Score=24.91 Aligned_cols=81 Identities=12% Similarity=0.168 Sum_probs=40.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037477 411 YSQVIFGLCKAGRFEDACNVLDEMEENGC-----IPDIKTWTILIQGHCAANE-VDRALLCFAKMMEKNYDADADLLDVL 484 (639)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----~p~~~t~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~l 484 (639)
.|.++.-.+..+.+.....+++.+..... ..+..+|.+++.+..+..- ---+..+|+.|.+.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 35555555555555555555555422100 1233455555555544433 23344555555555555555556666
Q ss_pred HHHHHcC
Q 037477 485 INGFLSQ 491 (639)
Q Consensus 485 i~~~~~~ 491 (639)
|.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 6555443
No 377
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=48.65 E-value=1.9e+02 Score=25.50 Aligned_cols=48 Identities=17% Similarity=0.219 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHHCCCCCCH--H-----hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037477 389 FDEAEKMMKAMKNAGFEPDN--I-----TYSQVIFGLCKAGRFEDACNVLDEMEE 436 (639)
Q Consensus 389 ~~~A~~~~~~m~~~g~~~~~--~-----~~~~li~~~~~~g~~~~A~~~~~~m~~ 436 (639)
++.|+.+|+.+.+.--.|.. . .--..+-.|.+.|.+++|.+++++...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 45566666666654322210 0 112334456677777777777777665
No 378
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=47.06 E-value=62 Score=20.08 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=25.2
Q ss_pred HHhhhCCCCCHHHHHHHHHhcCCChHHHHHHH
Q 037477 85 KLEELSPKLTHESVVYVLRKLDNDPEKASAFF 116 (639)
Q Consensus 85 ~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f 116 (639)
.|.+..++-....+..+|..+.||.-.|++.|
T Consensus 7 iL~rvFP~~kr~~Le~iL~~C~GDvv~AIE~~ 38 (39)
T PF03474_consen 7 ILTRVFPHQKRSVLELILQRCNGDVVQAIEQF 38 (39)
T ss_pred HHHHHCCCCChHHHHHHHHHcCCcHHHHHHHh
Confidence 35556677778888889999999998888764
No 379
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=47.06 E-value=2.8e+02 Score=26.99 Aligned_cols=41 Identities=7% Similarity=-0.004 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHH----CCCCCCHHHHHHH
Q 037477 267 ITYNGILRVLARHESVRDFWNVVEEMKK----EGYEMDIDTYIKI 307 (639)
Q Consensus 267 ~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~~~~~~~l 307 (639)
..+-.....|++-||-+.|++.++...+ .|.+.|+..+..=
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iR 149 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIR 149 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHH
Confidence 4455555667777777777666655433 3555666555443
No 380
>PHA02875 ankyrin repeat protein; Provisional
Probab=46.71 E-value=1.5e+02 Score=30.35 Aligned_cols=190 Identities=12% Similarity=0.074 Sum_probs=85.7
Q ss_pred HHHHHHHhcCCCCChhh--HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHH--hHHHHHHHHHhcCCHHHHHHHHHHH
Q 037477 359 RVANKYESLGNSLSKSV--YDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNI--TYSQVIFGLCKAGRFEDACNVLDEM 434 (639)
Q Consensus 359 ~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m 434 (639)
++.+.+.+.|..++... ..+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+.+.+..+++
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~-- 89 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD-- 89 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH--
Confidence 33444445566555422 233445555667765 344445566555432 11233455556777776555443
Q ss_pred HHCCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHcCCChhHHHHHHHHHHHhCC
Q 037477 435 EENGCIPDIK---TWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLL--DVLINGFLSQKRVNGAYKLLVEMIEKVR 509 (639)
Q Consensus 435 ~~~~~~p~~~---t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~ 509 (639)
.|...+.. .-.+.+...+..|+.+ +++.+.+.|..|+.... ...+...+..|+.+-+..+++ . |
T Consensus 90 --~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~----~-g 158 (413)
T PHA02875 90 --LGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLID----H-K 158 (413)
T ss_pred --cCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh----c-C
Confidence 33221111 0123334445566654 44555556655543211 123334455666655444433 2 3
Q ss_pred CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH------hHHHHHhhcCCHHHHHHHHH
Q 037477 510 LRPWQ---ATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPE------PFVQYISKFGTVEDASEFLK 570 (639)
Q Consensus 510 ~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~~~ll~~~g~~~~a~~~~~ 570 (639)
..++. .-++.+. ..+..|+.+ +++.+.+.|..++.. +....-...|+.+-+.-+++
T Consensus 159 ~~~~~~d~~g~TpL~-~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~ 223 (413)
T PHA02875 159 ACLDIEDCCGCTPLI-IAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIK 223 (413)
T ss_pred CCCCCCCCCCCCHHH-HHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHH
Confidence 33321 1122222 233445543 444555666655432 22222345566655444443
No 381
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=46.48 E-value=1.9e+02 Score=31.09 Aligned_cols=91 Identities=16% Similarity=0.201 Sum_probs=57.0
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCC--CCCCHHhHHHHHHHHHhcCCHH------HHHHHHHHHHHCCCCCCHHHHHHH
Q 037477 378 GIHRALTKLGRFDEAEKMMKAMKNAG--FEPDNITYSQVIFGLCKAGRFE------DACNVLDEMEENGCIPDIKTWTIL 449 (639)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~~~~p~~~t~~~l 449 (639)
++..+|...|++-.+.++++...... -+.-...||..|+.+.+.|.++ .|.+.+++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78888888999998888888887542 2223456788888888888754 3344444433 33477788887
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 037477 450 IQGHCAANEVDRALLCFAKMME 471 (639)
Q Consensus 450 i~~~~~~g~~~~a~~~~~~m~~ 471 (639)
+++-...-+-...+-++.+++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 7765443333333344444443
No 382
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=46.42 E-value=74 Score=20.06 Aligned_cols=35 Identities=20% Similarity=0.253 Sum_probs=28.8
Q ss_pred HHHHhhhCCCCCHHHHHHHHHhcCCChHHHHHHHH
Q 037477 83 ENKLEELSPKLTHESVVYVLRKLDNDPEKASAFFN 117 (639)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~ 117 (639)
-..|..+.|.++...+..+|....|+.+.|...+-
T Consensus 6 v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL 40 (43)
T smart00546 6 LHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLL 40 (43)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 35577788999999999999988899999886553
No 383
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.27 E-value=2.4e+02 Score=26.03 Aligned_cols=53 Identities=6% Similarity=0.014 Sum_probs=32.5
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChH-------hHHHHHhhc--CCHHHHHHHHHHhhcCCC
Q 037477 525 LGARRLEEAMNLLRLMKKQNYPPFPE-------PFVQYISKF--GTVEDASEFLKALSVKEY 577 (639)
Q Consensus 525 ~~~g~~~~A~~~~~~m~~~~~~p~~~-------~~~~ll~~~--g~~~~a~~~~~~~~~~~~ 577 (639)
...+++.+|+.+|++.....+..+.. -+...+|+. .+.-.+...+++..+..|
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP 226 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDP 226 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCC
Confidence 45678888999998887655443332 233444433 455556677777776644
No 384
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=45.98 E-value=4.2e+02 Score=28.65 Aligned_cols=102 Identities=8% Similarity=0.018 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 037477 265 NTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLR 344 (639)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~ 344 (639)
....++.|+..+... +.++..++++++.. . . ...+..++++....|-.....-+.+.+....+ ++...-..+..
T Consensus 309 ~~~~f~~lv~~lR~~-~~e~l~~l~~~~~~-~-~--~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~-~~~ea~~~~~~ 382 (574)
T smart00638 309 AAAKFLRLVRLLRTL-SEEQLEQLWRQLYE-K-K--KKARRIFLDAVAQAGTPPALKFIKQWIKNKKI-TPLEAAQLLAV 382 (574)
T ss_pred hHHHHHHHHHHHHhC-CHHHHHHHHHHHHh-C-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC-CHHHHHHHHHH
Confidence 445666666655433 56777777777654 1 1 56777888888888877766666666655443 22333333443
Q ss_pred HHhhcCCCchhHHHHHHHHHHhcCCCCC
Q 037477 345 SISSINNPDLGLVFRVANKYESLGNSLS 372 (639)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (639)
+......++.+.+..++..+........
T Consensus 383 ~~~~~~~Pt~~~l~~l~~l~~~~~~~~~ 410 (574)
T smart00638 383 LPHTARYPTEEILKALFELAESPEVQKQ 410 (574)
T ss_pred HHHhhhcCCHHHHHHHHHHhcCcccccc
Confidence 3343345555555555544444334433
No 385
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=45.97 E-value=2.2e+02 Score=25.36 Aligned_cols=70 Identities=11% Similarity=0.098 Sum_probs=44.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 037477 305 IKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALT 384 (639)
Q Consensus 305 ~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 384 (639)
.+++..|.+..+|.++.++++.|.+..+.-+ . ++++... .+..+--.+.|.....+.
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft-----~-LKGL~g~-----------------e~~asrCqivn~AaEiFL 192 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFT-----S-LKGLTGP-----------------EKLASRCQIVNIAAEIFL 192 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----h-ccCccCc-----------------cccCchhhhHHHHHHHHH
Confidence 4567778888899999999998876432211 1 1111100 112233345677777888
Q ss_pred ccCChhHHHHHHH
Q 037477 385 KLGRFDEAEKMMK 397 (639)
Q Consensus 385 ~~g~~~~A~~~~~ 397 (639)
+.|.+|.|..+++
T Consensus 193 ~sgsidGA~~vLr 205 (233)
T PF14669_consen 193 KSGSIDGALWVLR 205 (233)
T ss_pred HcCCchHHHHHHh
Confidence 8899999988887
No 386
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=45.91 E-value=75 Score=25.17 Aligned_cols=43 Identities=21% Similarity=0.414 Sum_probs=31.1
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037477 260 SGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISR 309 (639)
Q Consensus 260 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 309 (639)
.|..|+ +|+.+.+|...++|+++++-|.++| ..+...-+.|-.
T Consensus 61 sGy~Pt------ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~ 103 (128)
T PF09868_consen 61 SGYNPT------VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRS 103 (128)
T ss_pred cCCCCh------HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 456665 5666888999999999999999988 455554444433
No 387
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=45.54 E-value=47 Score=33.75 Aligned_cols=220 Identities=11% Similarity=0.111 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHH
Q 037477 316 MMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKM 395 (639)
Q Consensus 316 ~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 395 (639)
++++|.++.+.+.+ .......+....+.|.. ++.-.+..+.+++-.++
T Consensus 29 d~~eav~y~k~~p~------------------------~k~f~~~L~~a~~~g~~--------l~QPR~G~~~~~e~i~l 76 (480)
T TIGR01503 29 DLQDAVDYHKSIPA------------------------HKNFAEKLELAKKKGKT--------MAQPRAGVALLDEHIEL 76 (480)
T ss_pred CHHHHHHHHHhCCc------------------------cccHHHHHHHHHhcCCE--------eecCCCCCCcHHHHHHH
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---------CHHHHHHHHHHHH-----HcCCHHH
Q 037477 396 MKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIP---------DIKTWTILIQGHC-----AANEVDR 461 (639)
Q Consensus 396 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---------~~~t~~~li~~~~-----~~g~~~~ 461 (639)
++.+.+.| .+| ....-|+.|.+.+++++|...+++-.+.|... ...+...++...- ++|-.+
T Consensus 77 L~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~PvQvRHGtpD- 152 (480)
T TIGR01503 77 LRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPLQIRHGTPD- 152 (480)
T ss_pred HHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCeeccCCCCc-
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHH---HHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037477 462 ALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLV---EMIEKV---RLRPWQATFKTLIEKLLGARRLEEAMN 535 (639)
Q Consensus 462 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~---~m~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~ 535 (639)
+..+++-+...|+....----+.---|++.--+++++..|+ ++...+ |+..|..+|..|...++- =...-|+.
T Consensus 153 arlL~e~~~a~G~~a~EGG~ISYnlPYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpLtgtLvP-Psisiav~ 231 (480)
T TIGR01503 153 ARLLAEIILAGGFTSFEGGGISYNIPYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPLTGTLVP-PSISNAIG 231 (480)
T ss_pred HHHHHHHHHHcCCCccCCCcceeccccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCCCCCccC-hHHHHHHH
Q ss_pred HHHHHHhCCCCCChHhHHHHHhhcCCHHHHHHHHHHhhc
Q 037477 536 LLRLMKKQNYPPFPEPFVQYISKFGTVEDASEFLKALSV 574 (639)
Q Consensus 536 ~~~~m~~~~~~p~~~~~~~ll~~~g~~~~a~~~~~~~~~ 574 (639)
+++-+.. ..--...+..-+.++|++..-...+..+.+
T Consensus 232 ilE~Lla--~eqGVksisvgy~Q~Gn~~QDiaai~aL~~ 268 (480)
T TIGR01503 232 IIEGLLA--AEQGVKNITVGYGQVGNLTQDIAALRALEE 268 (480)
T ss_pred HHHHHHH--HHcCCeEEEeccccCCChHHHHHHHHHHHH
No 388
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=45.36 E-value=24 Score=29.01 Aligned_cols=29 Identities=21% Similarity=0.406 Sum_probs=16.0
Q ss_pred CChhHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 037477 492 KRVNGAYKLLVEMIEKVRLRPWQATFKTLIEK 523 (639)
Q Consensus 492 g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~ 523 (639)
|.-.+|..+|..|.+. |-.|| .|+.|+..
T Consensus 109 gsk~DaY~VF~kML~~-G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLER-GNPPD--DWDALLKE 137 (140)
T ss_pred ccCCcHHHHHHHHHhC-CCCCc--cHHHHHHH
Confidence 4445566666666655 55555 55555543
No 389
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=45.29 E-value=61 Score=22.61 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=9.6
Q ss_pred HHHHHHcCCChhHHHHHHHHHH
Q 037477 484 LINGFLSQKRVNGAYKLLVEMI 505 (639)
Q Consensus 484 li~~~~~~g~~~~A~~~~~~m~ 505 (639)
+|.+|...|++++|.++.+++.
T Consensus 29 vI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 3444444444444444444443
No 390
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=45.25 E-value=26 Score=19.14 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 581 AAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 581 ~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
..|..+...|...|++++|...+++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKA 27 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45778888999999999999998875
No 391
>PLN03025 replication factor C subunit; Provisional
Probab=44.81 E-value=2.7e+02 Score=27.34 Aligned_cols=89 Identities=11% Similarity=0.025 Sum_probs=0.0
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHhcCCChHHHHHHHHHHhhcCC-----------CCCChHHHHHHHHHHhccCChHHH
Q 037477 80 DELENKLEELSPKLTHESVVYVLRKLDNDPEKASAFFNWVCDKKQ-----------FRPSSTVYSLMLRNLVNKDSLKQF 148 (639)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~-----------~~~~~~~~~~li~~~~~~~~~~~a 148 (639)
..+....+.-+..++++.+...+....||+..|+..++......+ -.+....-..++..+.. +++++|
T Consensus 165 ~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~i~~~~~-~~~~~a 243 (319)
T PLN03025 165 GRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNCLK-GKFDDA 243 (319)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHHHHHHHc-CCHHHH
Q ss_pred HHHHHHHHhcCCCCCHHHHHH
Q 037477 149 WVTLRRMKEDHCYIEEETYLS 169 (639)
Q Consensus 149 ~~l~~~m~~~g~~~~~~t~~~ 169 (639)
...+.+|...|..|.......
T Consensus 244 ~~~l~~ll~~g~~~~~Il~~l 264 (319)
T PLN03025 244 CDGLKQLYDLGYSPTDIITTL 264 (319)
T ss_pred HHHHHHHHHcCCCHHHHHHHH
No 392
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.36 E-value=3.5e+02 Score=27.29 Aligned_cols=63 Identities=11% Similarity=0.015 Sum_probs=38.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 037477 409 ITYSQVIFGLCKAGRFEDACNVLDEMEENG--CIPDIKTWTILIQGHCAANEVDRALLCFAKMME 471 (639)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 471 (639)
..+.-+.+.|..+|+++.|++.|.+.+.-- .+-.+..|-.+|..-.-.|+|.....+..+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 456777788888888888888888854321 111223344455555556666666666655544
No 393
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=44.14 E-value=1.5e+02 Score=23.10 Aligned_cols=50 Identities=12% Similarity=0.050 Sum_probs=22.5
Q ss_pred HHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 037477 487 GFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQ 543 (639)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 543 (639)
.+.+.|+|++|..+.+.+ ..||...|.++.. .+.|..+++..-+.+|..+
T Consensus 48 SLmNrG~Yq~Al~l~~~~-----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL-----CYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHccchHHHHHHhcCCC-----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 444555555555544432 2455555444432 2344444444444444433
No 394
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.74 E-value=2.8e+02 Score=29.02 Aligned_cols=39 Identities=13% Similarity=0.152 Sum_probs=29.7
Q ss_pred HHHHhhhCCCCCHHHHHHHHHhcCCChHHHHHHHHHHhh
Q 037477 83 ENKLEELSPKLTHESVVYVLRKLDNDPEKASAFFNWVCD 121 (639)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~ 121 (639)
...++..+..++.+.+..+.....|++..|+.+++.+..
T Consensus 190 ~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i~ 228 (484)
T PRK14956 190 EKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIV 228 (484)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 333444567788888888888888999999999987654
No 395
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=43.70 E-value=5.1e+02 Score=28.98 Aligned_cols=44 Identities=11% Similarity=0.038 Sum_probs=28.5
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCC
Q 037477 271 GILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIK-ISRQFQKFRM 316 (639)
Q Consensus 271 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-li~~~~~~g~ 316 (639)
.++..+.|+|+.+.|.+.+++-... .+-..+|.. .+.+|.++-+
T Consensus 330 ~~vyy~lR~G~lk~A~~~l~e~~~~--~~~l~~~f~~y~~A~~~~~~ 374 (835)
T KOG2168|consen 330 PLVYYLLRCGDLKAASQFLNENKDF--FEKLAELFPTYFNAYAKNLS 374 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHHHHHHhhhcCCC
Confidence 4667788999999999998887654 222333332 2666666643
No 396
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=43.68 E-value=1.8e+02 Score=23.80 Aligned_cols=49 Identities=20% Similarity=0.160 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHC
Q 037477 354 LGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNA 402 (639)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 402 (639)
.-++.+.+..+....+.|++.+..+.+++|-+.+|+..|.++|+-++..
T Consensus 65 ~wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 65 GWEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3345556666666777788888888888888888888888888877643
No 397
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=43.50 E-value=5.2e+02 Score=29.06 Aligned_cols=187 Identities=17% Similarity=0.114 Sum_probs=93.8
Q ss_pred HccCChhHHHHHHHHHHHC----CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHH--HHHH
Q 037477 384 TKLGRFDEAEKMMKAMKNA----GFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKT---WTILI--QGHC 454 (639)
Q Consensus 384 ~~~g~~~~A~~~~~~m~~~----g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t---~~~li--~~~~ 454 (639)
...|++++|.++-+..... -..+..+.+..+..+..-.|++++|..+..+..+..-.-+... |..+. ..+.
T Consensus 469 l~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~ 548 (894)
T COG2909 469 LNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILE 548 (894)
T ss_pred HhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 3457777777776665432 2234555667777778888999998888776654322223332 33332 2344
Q ss_pred HcCCHHHH--HHHHHHHHHc---CC---CCCHHHHHHHHHHHHcC-CChhHHHHHHHHHHHhCCCCCCHHHHH--HHHHH
Q 037477 455 AANEVDRA--LLCFAKMMEK---NY---DADADLLDVLINGFLSQ-KRVNGAYKLLVEMIEKVRLRPWQATFK--TLIEK 523 (639)
Q Consensus 455 ~~g~~~~a--~~~~~~m~~~---g~---~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~p~~~~~~--~li~~ 523 (639)
..|+...+ ...+...... .. .+-.-++..++.++.+. +...++..-+..-... ...|-...+. .|++.
T Consensus 549 ~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~-~~~~~~~~~~~~~LA~l 627 (894)
T COG2909 549 AQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVY-TPQPLLSRLALSMLAEL 627 (894)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhc-ccchhHHHHHHHHHHHH
Confidence 56633322 2223222221 10 11223344444454441 1222222222222211 2223222222 56677
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC----hHhHHHHH-----hhcCCHHHHHHHHHH
Q 037477 524 LLGARRLEEAMNLLRLMKKQNYPPF----PEPFVQYI-----SKFGTVEDASEFLKA 571 (639)
Q Consensus 524 ~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~ll-----~~~g~~~~a~~~~~~ 571 (639)
....|+.++|...++++......++ ...-...+ ...|+.+.+...+.+
T Consensus 628 ~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 628 EFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 7788999999998888876433332 21111111 355777777666555
No 398
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=43.16 E-value=4.1e+02 Score=29.38 Aligned_cols=78 Identities=9% Similarity=0.025 Sum_probs=50.2
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHhcCCChHHHHHHHHHHhhcCCC---C----------CChHHHHHHHHHHhccCChHHH
Q 037477 82 LENKLEELSPKLTHESVVYVLRKLDNDPEKASAFFNWVCDKKQF---R----------PSSTVYSLMLRNLVNKDSLKQF 148 (639)
Q Consensus 82 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~---~----------~~~~~~~~li~~~~~~~~~~~a 148 (639)
+...++.-+..++...+..+.+...|++..|+.+++.+.. .|. . .+......|+.++.+ ++...+
T Consensus 187 L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDqaia-~g~g~It~e~V~~lLG~~d~~~If~LldAL~~-~d~~~a 264 (709)
T PRK08691 187 LAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIA-LGSGKVAENDVRQMIGAVDKQYLYELLTGIIN-QDGAAL 264 (709)
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHH-hcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc-CCHHHH
Confidence 4445556667788888887777778899999999987654 221 0 112223344444444 667777
Q ss_pred HHHHHHHHhcCCC
Q 037477 149 WVTLRRMKEDHCY 161 (639)
Q Consensus 149 ~~l~~~m~~~g~~ 161 (639)
+.++++|...|+.
T Consensus 265 l~~l~~L~~~G~d 277 (709)
T PRK08691 265 LAKAQEMAACAVG 277 (709)
T ss_pred HHHHHHHHHhCCC
Confidence 7777777777753
No 399
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=42.96 E-value=3.4e+02 Score=27.26 Aligned_cols=149 Identities=12% Similarity=0.039 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 037477 447 TILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLG 526 (639)
Q Consensus 447 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 526 (639)
......+....|++.-..++.+- +-...++..+-..|..+|+.+.|.+++++..-. -...+......+..
T Consensus 14 q~~F~~~v~~~Dp~~l~~ll~~~-----PyHidtLlqls~v~~~~gd~~~A~~lleRALf~-----~e~~~~~~F~~~~~ 83 (360)
T PF04910_consen 14 QEQFYAAVQSHDPNALINLLQKN-----PYHIDTLLQLSEVYRQQGDHAQANDLLERALFA-----FERAFHPSFSPFRS 83 (360)
T ss_pred HHHHHHHHHccCHHHHHHHHHHC-----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----HHHHHHHHhhhhhc
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChHhHHHHHhhcCCHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHH-hcCCHHHHHHHHh
Q 037477 527 ARRLEEAMNLLRLMKKQNYPPFPEPFVQYISKFGTVEDASEFLKALSVKEYP-SSAAYLQVFESFF-NEGRHYEAKDLLY 604 (639)
Q Consensus 527 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~-~~g~~~~A~~~~~ 604 (639)
......+.-=+..-..+.+--...-+...+.+.|.+..|.++.+-+...+|. |+-....+|+.|+ ++++++--+++.+
T Consensus 84 ~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~ 163 (360)
T PF04910_consen 84 NLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSE 163 (360)
T ss_pred ccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHH
Q ss_pred h
Q 037477 605 K 605 (639)
Q Consensus 605 ~ 605 (639)
.
T Consensus 164 ~ 164 (360)
T PF04910_consen 164 S 164 (360)
T ss_pred h
No 400
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=42.39 E-value=1.8e+02 Score=28.41 Aligned_cols=81 Identities=9% Similarity=0.039 Sum_probs=57.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh
Q 037477 416 FGLCKAGRFEDACNVLDEMEENGCIP-DIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRV 494 (639)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 494 (639)
+-|.+.|.+++|+..|..-.... | |.+++..-..+|.+...+..|..=-...+..+ ...+.+|.+.+..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~--P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--------~~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY--PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--------KLYVKAYSRRMQA 174 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC--CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--------HHHHHHHHHHHHH
Confidence 56999999999999998877643 5 88888888889999888877665554444332 2446677776655
Q ss_pred hHHHHHHHHHHH
Q 037477 495 NGAYKLLVEMIE 506 (639)
Q Consensus 495 ~~A~~~~~~m~~ 506 (639)
..++....+.++
T Consensus 175 R~~Lg~~~EAKk 186 (536)
T KOG4648|consen 175 RESLGNNMEAKK 186 (536)
T ss_pred HHHHhhHHHHHH
Confidence 555555444443
No 401
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=42.19 E-value=1.6e+02 Score=24.92 Aligned_cols=49 Identities=22% Similarity=0.211 Sum_probs=22.9
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 037477 396 MKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKT 445 (639)
Q Consensus 396 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 445 (639)
.+.+.+.|++++.. -..++..+...++.-.|.++++++.+.+...+..|
T Consensus 9 ~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaT 57 (145)
T COG0735 9 IERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLAT 57 (145)
T ss_pred HHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhH
Confidence 33444455444332 23344455555444555555555555544443333
No 402
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=41.93 E-value=3.8e+02 Score=27.04 Aligned_cols=64 Identities=9% Similarity=0.101 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037477 374 SVYDGIHRALTKLGRFDEAEKMMKAMKNAG--FEPDNITYSQVIFGLCKAGRFEDACNVLDEMEEN 437 (639)
Q Consensus 374 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 437 (639)
..+.-+.+-|..+|+++.|++.+.+..+-- .+-....|-.+|..-.-.|+|......-.+....
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 467778889999999999999999865421 1122344556666677789999999988887764
No 403
>PRK13342 recombination factor protein RarA; Reviewed
Probab=41.92 E-value=4e+02 Score=27.31 Aligned_cols=43 Identities=12% Similarity=0.080 Sum_probs=26.7
Q ss_pred HHHHHHHHHh---cCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 037477 304 YIKISRQFQK---FRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSI 346 (639)
Q Consensus 304 ~~~li~~~~~---~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~ 346 (639)
+..++.++.+ .++.+.|+..+..|.+.|..|....-..++.++
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3344444444 467888888888888887777655444444443
No 404
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=41.64 E-value=3.4e+02 Score=26.42 Aligned_cols=109 Identities=10% Similarity=0.075 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHHCCC----CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 037477 389 FDEAEKMMKAMKNAGF----EPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALL 464 (639)
Q Consensus 389 ~~~A~~~~~~m~~~g~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~ 464 (639)
.+.|.+.|+.....+. ..++.....++....+.|..+.-..+++..... ++......++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 4567778887776422 234445556666677777766655555555543 467777888888888888888888
Q ss_pred HHHHHHHcC-CCCCHHHHHHHHHHHHcCCC--hhHHHHHHH
Q 037477 465 CFAKMMEKN-YDADADLLDVLINGFLSQKR--VNGAYKLLV 502 (639)
Q Consensus 465 ~~~~m~~~g-~~~~~~~~~~li~~~~~~g~--~~~A~~~~~ 502 (639)
+++.....+ +++.. .. .++.++...+. .+.++.++.
T Consensus 223 ~l~~~l~~~~v~~~d-~~-~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQD-IR-YVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHHHCTSTS-TTT-HH-HHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHHHHcCCcccccHH-HH-HHHHHHhcCChhhHHHHHHHHH
Confidence 888888754 44333 33 33444442333 255655544
No 405
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.48 E-value=4.4e+02 Score=27.62 Aligned_cols=92 Identities=10% Similarity=0.051 Sum_probs=55.2
Q ss_pred hhccCcCCHHHHHHHHHHhccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHH
Q 037477 224 EDMKIELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDT 303 (639)
Q Consensus 224 ~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 303 (639)
...++.++...+..+.....|+...|+.+++.+..-. ....++..+...+ |+ ++...
T Consensus 194 ~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i~~~---~~~it~~~V~~~l-------------------g~-~~~~~ 250 (484)
T PRK14956 194 KIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFT---DSKLTGVKIRKMI-------------------GY-HGIEF 250 (484)
T ss_pred HHcCCCCCHHHHHHHHHHcCChHHHHHHHHHHHHHhC---CCCcCHHHHHHHh-------------------CC-CCHHH
Confidence 3345667777777777777788888888887653111 1112222222111 32 25556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHH
Q 037477 304 YIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQD 338 (639)
Q Consensus 304 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~ 338 (639)
+..++......+....|+.++++|.+.|..|....
T Consensus 251 ~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~ 285 (484)
T PRK14956 251 LTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFL 285 (484)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHH
Confidence 66666666555556788888888888887776543
No 406
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=41.47 E-value=2.8e+02 Score=29.42 Aligned_cols=150 Identities=14% Similarity=0.064 Sum_probs=74.0
Q ss_pred CCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHH
Q 037477 333 KPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYS 412 (639)
Q Consensus 333 ~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 412 (639)
-|+..+..+++.-+....-++.+.+..++..|.. ...|--...|..---..-.|+...|.+.+.........-..+...
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~-~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v 646 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK-PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLV 646 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC-CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHH
Confidence 3455555555544444333333334444433332 222222222221111223466666666655544332112223344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037477 413 QVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLI 485 (639)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 485 (639)
.|.....+.|...+|-.++.+...... ..+-++-.+.++|....++++|++.|++.++.. .-+...-+.|.
T Consensus 647 ~la~~~~~~~~~~da~~~l~q~l~~~~-sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~ 717 (886)
T KOG4507|consen 647 NLANLLIHYGLHLDATKLLLQALAINS-SEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLK 717 (886)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHhhcc-cCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHH
Confidence 455556666666677777766655432 234566666777777777777777777776653 22344444443
No 407
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=41.26 E-value=90 Score=19.57 Aligned_cols=34 Identities=29% Similarity=0.364 Sum_probs=27.7
Q ss_pred HHHhhhCCCCCHHHHHHHHHhcCCChHHHHHHHH
Q 037477 84 NKLEELSPKLTHESVVYVLRKLDNDPEKASAFFN 117 (639)
Q Consensus 84 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~ 117 (639)
..|..+.|.++...+..+|....|+.+.|...+-
T Consensus 6 ~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL 39 (42)
T PF02845_consen 6 QQLQEMFPDLDREVIEAVLQANNGDVEAAIDALL 39 (42)
T ss_dssp HHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4577888999999999999888899998876543
No 408
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.88 E-value=3.5e+02 Score=27.18 Aligned_cols=79 Identities=9% Similarity=0.070 Sum_probs=49.8
Q ss_pred HHHHhhhCCCCCHHHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCCh------------HHHHHHHHHHhccCChHHHHH
Q 037477 83 ENKLEELSPKLTHESVVYVLRKLDNDPEKASAFFNWVCDKKQFRPSS------------TVYSLMLRNLVNKDSLKQFWV 150 (639)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~------------~~~~~li~~~~~~~~~~~a~~ 150 (639)
...+...+..++++.+...+....|++..|...++.+..-.+-..+. ...-.++++. ..|+..++..
T Consensus 177 ~~~~~~~g~~i~~~al~~l~~~~~gdlr~~~~~lekl~~y~~~~it~~~v~~~~~~~~~~~if~l~~ai-~~~~~~~a~~ 255 (367)
T PRK14970 177 AGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKNITRQAVTENLNILDYDTYINVTDLI-LENKIPELLL 255 (367)
T ss_pred HHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHH
Confidence 34444556778888888877777889999988888765311111111 1111233333 3478888888
Q ss_pred HHHHHHhcCCCC
Q 037477 151 TLRRMKEDHCYI 162 (639)
Q Consensus 151 l~~~m~~~g~~~ 162 (639)
+++.+...|..|
T Consensus 256 ~~~~l~~~~~~~ 267 (367)
T PRK14970 256 AFNEILRKGFDG 267 (367)
T ss_pred HHHHHHHcCCCH
Confidence 888888887655
No 409
>PHA02940 hypothetical protein; Provisional
Probab=40.64 E-value=3e+02 Score=25.40 Aligned_cols=71 Identities=14% Similarity=0.059 Sum_probs=44.3
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 037477 268 TYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSI 346 (639)
Q Consensus 268 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~ 346 (639)
|...++..|++.++.++-.-+-+++.+. -+| .++.--...+++.+++-++.|.+..-.....||+.|.+++
T Consensus 144 tv~~la~~yvq~vk~d~r~~~a~~l~ke------Ls~--~~d~~enepdle~d~keie~~lE~~~dl~rGtY~vL~~al 214 (315)
T PHA02940 144 TVILLAGRYVQDVKKDDRRTIANKLSKE------LSW--TIDYQENEPDLESDFKEIEEELEEKDDLSRGTYKVLKRAL 214 (315)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHhh------hhH--HHHHHhcCcchhhhHHHHHHHHhccchhhhhHHHHHHHHH
Confidence 4456677778877777766666655432 011 1111223455777888888888877677777888877664
No 410
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=40.42 E-value=5.4e+02 Score=29.81 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=20.1
Q ss_pred hHHHHHHHHHccC--ChhHHHHHHHHHHHC
Q 037477 375 VYDGIHRALTKLG--RFDEAEKMMKAMKNA 402 (639)
Q Consensus 375 ~~~~li~~~~~~g--~~~~A~~~~~~m~~~ 402 (639)
.+..++.+|.+.+ ++++|+....++++.
T Consensus 814 ~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 814 YLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 4456777777777 777787777777754
No 411
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=40.14 E-value=3.4e+02 Score=26.23 Aligned_cols=110 Identities=12% Similarity=0.086 Sum_probs=54.9
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CChHhHHHHHhhcCC
Q 037477 483 VLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYP-PFPEPFVQYISKFGT 561 (639)
Q Consensus 483 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~~~g~ 561 (639)
.++..+.+.++..+....+..+..- ..-...++.+...|++..|++++.+..+.--. .....+..+- .+
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~~v-------~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L~---~~ 172 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIKTV-------QQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRHLS---SQ 172 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHHh---HH
Confidence 3444455555555555555555332 12334456666777888888777766542000 0000111111 11
Q ss_pred HHHHHHHHHHhhc----C--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037477 562 VEDASEFLKALSV----K--EYPSSAAYLQVFESFFNEGRHYEAKDL 602 (639)
Q Consensus 562 ~~~a~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 602 (639)
+++-....+.+.+ . ..-++..|..+..+|.-.|+...+.+-
T Consensus 173 L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dk 219 (291)
T PF10475_consen 173 LQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDK 219 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHH
Confidence 2222221111111 1 245888899999999888877666543
No 412
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=40.09 E-value=2.3e+02 Score=30.39 Aligned_cols=91 Identities=13% Similarity=0.128 Sum_probs=63.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHH------HHHHHHHHHHHcCCCCCHHHHHHH
Q 037477 413 QVIFGLCKAGRFEDACNVLDEMEEN--GCIPDIKTWTILIQGHCAANEVD------RALLCFAKMMEKNYDADADLLDVL 484 (639)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~t~~~li~~~~~~g~~~------~a~~~~~~m~~~g~~~~~~~~~~l 484 (639)
+|+.+|..+|++..+.++++..... |-+.-...||..|+.+.+.|.++ .|.+.+++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 8999999999999999999998764 33334567888899999999764 3344444433 45588899888
Q ss_pred HHHHHcCCChhHHHHHHHHHHH
Q 037477 485 INGFLSQKRVNGAYKLLVEMIE 506 (639)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~ 506 (639)
+++-..--.-.-..-++.+...
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 8776553333334444554444
No 413
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.89 E-value=4.6e+02 Score=28.60 Aligned_cols=78 Identities=6% Similarity=-0.030 Sum_probs=49.3
Q ss_pred HHHHhhhCCCCCHHHHHHHHHhcCCChHHHHHHHHHHhhcCCC-C------------CChHHHHHHHHHHhccCChHHHH
Q 037477 83 ENKLEELSPKLTHESVVYVLRKLDNDPEKASAFFNWVCDKKQF-R------------PSSTVYSLMLRNLVNKDSLKQFW 149 (639)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~-~------------~~~~~~~~li~~~~~~~~~~~a~ 149 (639)
...+...+..++...+..++....|++..|+.+++.+.. .+. . .+......++.++.. |+...++
T Consensus 193 ~~i~~~egi~ie~~AL~~La~~s~GslR~al~lLdq~ia-~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~~-~d~~~al 270 (618)
T PRK14951 193 TQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIA-FGSGQLQEAAVRQMLGSVDRSHVFRLIDALAQ-GDGRTVV 270 (618)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH-hcCCCcCHHHHHHHHcCCCHHHHHHHHHHHHc-CCHHHHH
Confidence 333445567778887777777778999999999886554 221 1 112223334444444 6777788
Q ss_pred HHHHHHHhcCCCC
Q 037477 150 VTLRRMKEDHCYI 162 (639)
Q Consensus 150 ~l~~~m~~~g~~~ 162 (639)
.++++|.+.|..+
T Consensus 271 ~~l~~l~~~G~~~ 283 (618)
T PRK14951 271 ETADELRLNGLSA 283 (618)
T ss_pred HHHHHHHHcCCCH
Confidence 8888888777543
No 414
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=39.75 E-value=3.4e+02 Score=25.86 Aligned_cols=136 Identities=12% Similarity=0.084 Sum_probs=82.6
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCCCHHhH-------HHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCHHHHH
Q 037477 379 IHRALTKLGRFDEAEKMMKAMKNAGFEPDNITY-------SQVIFGLCKAGRFEDACNVLDEME----ENGCIPDIKTWT 447 (639)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-------~~li~~~~~~g~~~~A~~~~~~m~----~~~~~p~~~t~~ 447 (639)
+.+-..+.+++++|...+.++...|+..|..+. ..+...|...|+...-.+...... +-.-........
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 445566788999999999999999887776554 456778888888776555544322 211111334455
Q ss_pred HHHHHHHH-cCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHcCCChhHHHHHHHHHHHh---CCCCCCH
Q 037477 448 ILIQGHCA-ANEVDRALLCFAKMMEKNYDAD-----ADLLDVLINGFLSQKRVNGAYKLLVEMIEK---VRLRPWQ 514 (639)
Q Consensus 448 ~li~~~~~-~g~~~~a~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~p~~ 514 (639)
++|..+.. ...++....+....++...+-. ...-.-++..+.+.|.+.+|+.+...+... +.-+|+.
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~L 164 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINL 164 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccce
Confidence 56655543 3345555666555554322211 122345778889999999999877655432 2445553
No 415
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=39.31 E-value=2.6e+02 Score=27.06 Aligned_cols=109 Identities=13% Similarity=0.184 Sum_probs=56.1
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 037477 379 IHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANE 458 (639)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~ 458 (639)
++....+.++.....+.+..+. ....-...+..+...|++..|++++.+..+.- . ...-|+++=.. ..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l-~-~l~~~~c~~~L---~~~ 172 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQLL-E-ELKGYSCVRHL---SSQ 172 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-H-hcccchHHHHH---hHH
Confidence 4444555555555555555554 22334556677778888888888887766520 0 00111111000 112
Q ss_pred HHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHcCCChhHHH
Q 037477 459 VDRALLCFAKMMEK-----NYDADADLLDVLINGFLSQKRVNGAY 498 (639)
Q Consensus 459 ~~~a~~~~~~m~~~-----g~~~~~~~~~~li~~~~~~g~~~~A~ 498 (639)
+++-....+++++. -..-|...|..++.+|.-.|+...+.
T Consensus 173 L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 173 LQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHH
Confidence 22223333333221 01346777888888887777665544
No 416
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=39.17 E-value=3.6e+02 Score=25.99 Aligned_cols=74 Identities=14% Similarity=0.337 Sum_probs=40.2
Q ss_pred HHHHHccCChhHHHHH-HHHHHHCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHH
Q 037477 380 HRALTKLGRFDEAEKM-MKAMKNAGFEPDN----ITYSQVIFGLCKAGRFEDACNVL-DEMEENGCIPDIKTWTILIQGH 453 (639)
Q Consensus 380 i~~~~~~g~~~~A~~~-~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~-~~m~~~~~~p~~~t~~~li~~~ 453 (639)
..-..+...+++.... =++|++.++ |+. +.|+.+|++-- |.+-.++. ++..+ ...+|..|+.++
T Consensus 262 ~~q~s~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsave----WnKkeelva~qalr-----hlK~yaPLL~af 331 (412)
T KOG2297|consen 262 QEQVSEEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVE----WNKKEELVAEQALR-----HLKQYAPLLAAF 331 (412)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHh----hchHHHHHHHHHHH-----HHHhhhHHHHHH
Confidence 3334444455555443 445666654 443 34666666543 33322222 12222 356788899999
Q ss_pred HHcCCHHHHH
Q 037477 454 CAANEVDRAL 463 (639)
Q Consensus 454 ~~~g~~~~a~ 463 (639)
|..|+.+..+
T Consensus 332 ~s~g~sEL~L 341 (412)
T KOG2297|consen 332 CSQGQSELEL 341 (412)
T ss_pred hcCChHHHHH
Confidence 9999877554
No 417
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=39.15 E-value=1.1e+02 Score=22.55 Aligned_cols=39 Identities=21% Similarity=0.450 Sum_probs=28.7
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHH
Q 037477 260 SGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYI 305 (639)
Q Consensus 260 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 305 (639)
.|+.|+ +++.+.++.-.++|+++++-|.++| +.+...-+
T Consensus 31 ~gy~Pt------V~D~L~rCdT~EEAlEii~yleKrG-Ei~~E~A~ 69 (98)
T COG4003 31 SGYNPT------VIDFLRRCDTEEEALEIINYLEKRG-EITPEMAK 69 (98)
T ss_pred CCCCch------HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 455564 6677888999999999999999988 44544333
No 418
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=39.12 E-value=4.7e+02 Score=27.27 Aligned_cols=84 Identities=5% Similarity=-0.032 Sum_probs=55.6
Q ss_pred HHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCchhhHHHHHHHH
Q 037477 112 ASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKED-HCYIEEETYLSILGVLKKAKKASDLAALNQFH 190 (639)
Q Consensus 112 A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~-g~~~~~~t~~~ll~~~~~~~~~~~~~~~~~~~ 190 (639)
...+|..+.. .+..|+..|..-|..+-+.+.+.++-.+|.+|... +-.||.+.+.+.= ....+ .....++.++
T Consensus 90 Iv~lyr~at~--rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~w--efe~n--~ni~saRalf 163 (568)
T KOG2396|consen 90 IVFLYRRATN--RFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKW--EFEIN--LNIESARALF 163 (568)
T ss_pred HHHHHHHHHH--hcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhh--HHhhc--cchHHHHHHH
Confidence 4455666554 35579999999999999998899999999999875 4556666654321 11122 1245556777
Q ss_pred HHHhhhccchh
Q 037477 191 DGMVKEIAMDN 201 (639)
Q Consensus 191 ~~~~~~~~~~~ 201 (639)
...++.++..+
T Consensus 164 lrgLR~npdsp 174 (568)
T KOG2396|consen 164 LRGLRFNPDSP 174 (568)
T ss_pred HHHhhcCCCCh
Confidence 77777654433
No 419
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=38.99 E-value=5.3e+02 Score=27.85 Aligned_cols=63 Identities=8% Similarity=0.049 Sum_probs=36.5
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 037477 372 SKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGC 439 (639)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 439 (639)
....+..+++.+. .=+.+.-.+++.++.. . . ...+..++++....|-.....-+.+.+....+
T Consensus 309 ~~~~f~~lv~~lR-~~~~e~l~~l~~~~~~-~-~--~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~ 371 (574)
T smart00638 309 AAAKFLRLVRLLR-TLSEEQLEQLWRQLYE-K-K--KKARRIFLDAVAQAGTPPALKFIKQWIKNKKI 371 (574)
T ss_pred hHHHHHHHHHHHH-hCCHHHHHHHHHHHHh-C-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 3445555555443 3445556666666653 1 1 45677777777777776666666655555443
No 420
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=38.80 E-value=5.5e+02 Score=28.01 Aligned_cols=227 Identities=10% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHC------CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 037477 391 EAEKMMKAMKNA------GFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALL 464 (639)
Q Consensus 391 ~A~~~~~~m~~~------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~ 464 (639)
.+.++.+.+.+. .+..+....-..+--..+.=+.++-..+++++...- .....+..++++....|-.....-
T Consensus 322 ~~~~l~~~l~~~~~~~~~~~~~~~~~~f~~Lv~~lr~l~~~~L~~l~~~~~~~~--~~~~~r~~~lDal~~aGT~~av~~ 399 (618)
T PF01347_consen 322 NLKELLKELADLLEEPEDPVSKETLSKFSRLVRLLRTLSYEDLEELYKQLKSKS--KKEQARKIFLDALPQAGTNPAVKF 399 (618)
T ss_dssp ---HHHHHHHHHHHH-SSS--TTHHHHHHHHHHHHTTS-HHHHHHHHHHHTTS-----HHHHHHHHHHHHHH-SHHHHHH
T ss_pred HHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHcCCHHHHHH
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcC---------
Q 037477 465 CFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW-------QATFKTLIEKLLGAR--------- 528 (639)
Q Consensus 465 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-------~~~~~~li~~~~~~g--------- 528 (639)
+.+.+....+.+....-..+.-......--.+.++.+.+|.+...+..+ ..++.+++.-++...
T Consensus 400 i~~~I~~~~~~~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~ 479 (618)
T PF01347_consen 400 IKDLIKSKKLTDDEAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPC 479 (618)
T ss_dssp HHHHHHTT-S-HHHHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeeccccccccccc
Q ss_pred -------CHHHHHHHHHHHHhCCCCCChHhHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH--hcCCHHHH
Q 037477 529 -------RLEEAMNLLRLMKKQNYPPFPEPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFF--NEGRHYEA 599 (639)
Q Consensus 529 -------~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A 599 (639)
-.+.-...+......+-.....++...++..|..+.+..+...+......+...-...+.++. ..-..+++
T Consensus 480 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v 559 (618)
T PF01347_consen 480 SRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKV 559 (618)
T ss_dssp -SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHH
T ss_pred chhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHH
Q ss_pred HHHHhhCCccccCChhHHHh
Q 037477 600 KDLLYKCPHHIRQDSKISLL 619 (639)
Q Consensus 600 ~~~~~~m~~~~~~~~~~~~l 619 (639)
.+++-.+-.+...++++...
T Consensus 560 ~~~l~~I~~n~~e~~EvRia 579 (618)
T PF01347_consen 560 REILLPIFMNTTEDPEVRIA 579 (618)
T ss_dssp HHHHHHHHH-TTS-HHHHHH
T ss_pred HHHHHHHhcCCCCChhHHHH
No 421
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=38.18 E-value=4.4e+02 Score=26.67 Aligned_cols=55 Identities=9% Similarity=0.166 Sum_probs=37.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHH--cCCChhHHHHHHHHHHHh
Q 037477 452 GHCAANEVDRALLCFAKMMEKNYDADAD--LLDVLINGFL--SQKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 452 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~--~~g~~~~A~~~~~~m~~~ 507 (639)
.+.+.+++..|.++++.+... ++++.. .+..+..+|. ...++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445788888888888888876 555544 3444555553 456677888888876654
No 422
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.13 E-value=6e+02 Score=28.17 Aligned_cols=152 Identities=9% Similarity=0.071 Sum_probs=81.8
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhc
Q 037477 273 LRVLARHESVRDFWNVVEEMKKEGYEM---DIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSI 349 (639)
Q Consensus 273 i~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~ 349 (639)
|+-+.+.+.+++|+++.+.... ..| ....+...|..+...|++++|-...-.|... +..-|-.-+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 3446677889999887766543 344 3556788889999999999999888888654 222222222222221
Q ss_pred CCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHH---------CCCC-------CCHHhHHH
Q 037477 350 NNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKN---------AGFE-------PDNITYSQ 413 (639)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---------~g~~-------~~~~~~~~ 413 (639)
+. ...+...+-......+..+|..++..+.. .+...-.++...... ...+ -+...-..
T Consensus 437 ~~-----l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~ 510 (846)
T KOG2066|consen 437 DQ-----LTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEV 510 (846)
T ss_pred cc-----cchhhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHH
Confidence 11 11111111111222455678777777766 222221111111000 0000 11122234
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 037477 414 VIFGLCKAGRFEDACNVLDEMEE 436 (639)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~ 436 (639)
|...|...+++++|+.++-..++
T Consensus 511 La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 511 LAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHccChHHHHHHHHhccC
Confidence 77888888999999888776654
No 423
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.55 E-value=3.8e+02 Score=28.43 Aligned_cols=77 Identities=10% Similarity=0.093 Sum_probs=44.6
Q ss_pred HHHhhhCCCCCHHHHHHHHHhcCCChHHHHHHHHHHhhcCCC-C------------CChHHHHHHHHHHhccCChHHHHH
Q 037477 84 NKLEELSPKLTHESVVYVLRKLDNDPEKASAFFNWVCDKKQF-R------------PSSTVYSLMLRNLVNKDSLKQFWV 150 (639)
Q Consensus 84 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~-~------------~~~~~~~~li~~~~~~~~~~~a~~ 150 (639)
..++..+..+++..+........|++..|+.+++.+.. .|- . ++....-.|+.++.. |+.+.++.
T Consensus 189 ~il~~egi~~~~~al~~ia~~s~GslR~al~lLdq~ia-~~~~~It~~~V~~~lg~~~~~~i~~ll~al~~-~d~~~~l~ 266 (509)
T PRK14958 189 HLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIA-YGNGKVLIADVKTMLGTIEPLLLFDILEALAA-KAGDRLLG 266 (509)
T ss_pred HHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHh-cCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHc-CCHHHHHH
Confidence 34555566777777766666667888888888876554 221 1 111222233333333 56666677
Q ss_pred HHHHHHhcCCCC
Q 037477 151 TLRRMKEDHCYI 162 (639)
Q Consensus 151 l~~~m~~~g~~~ 162 (639)
++++|.+.|..|
T Consensus 267 ~~~~l~~~g~~~ 278 (509)
T PRK14958 267 CVTRLVEQGVDF 278 (509)
T ss_pred HHHHHHHcCCCH
Confidence 777777766544
No 424
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=37.46 E-value=58 Score=31.16 Aligned_cols=47 Identities=11% Similarity=0.166 Sum_probs=37.3
Q ss_pred CCCChHH-HHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 037477 125 FRPSSTV-YSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSIL 171 (639)
Q Consensus 125 ~~~~~~~-~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll 171 (639)
+.|+..+ ||..|....+.|++++|+.+++|-++.|+.--..||...+
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 3355544 6899999999999999999999999999866556654433
No 425
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=36.68 E-value=3e+02 Score=29.14 Aligned_cols=39 Identities=13% Similarity=0.114 Sum_probs=26.9
Q ss_pred HHHHhhhCCCCCHHHHHHHHHhcCCChHHHHHHHHHHhh
Q 037477 83 ENKLEELSPKLTHESVVYVLRKLDNDPEKASAFFNWVCD 121 (639)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~ 121 (639)
...++..+..++.+.+........|++..|+..++.+..
T Consensus 197 ~~i~~~egi~ie~eAL~~Ia~~s~GslR~al~~Ldkai~ 235 (507)
T PRK06645 197 EYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAAS 235 (507)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 344445566677777776666677888888888887644
No 426
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=36.62 E-value=4.4e+02 Score=26.17 Aligned_cols=78 Identities=12% Similarity=0.096 Sum_probs=47.3
Q ss_pred HHHhhhCCCCCHHHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCC------------hHHHHHHHHHHhccCChHHHHHH
Q 037477 84 NKLEELSPKLTHESVVYVLRKLDNDPEKASAFFNWVCDKKQFRPS------------STVYSLMLRNLVNKDSLKQFWVT 151 (639)
Q Consensus 84 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~------------~~~~~~li~~~~~~~~~~~a~~l 151 (639)
..++..+..+++..+...+....|++..|....+.+....+-..+ ....-.++.+.. .|+..+|..+
T Consensus 187 ~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~lekl~~~~~~~it~~~v~~~~~~~~~~~i~~l~~ai~-~~~~~~a~~~ 265 (355)
T TIGR02397 187 KILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGNGNITYEDVNELLGLVDDEKLIELLEAIL-NKDTAEALKI 265 (355)
T ss_pred HHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCHHHHHHHhCCCCHHHHHHHHHHHH-cCCHHHHHHH
Confidence 334445666777777776777778888888877765441110011 112233455554 3778888888
Q ss_pred HHHHHhcCCCC
Q 037477 152 LRRMKEDHCYI 162 (639)
Q Consensus 152 ~~~m~~~g~~~ 162 (639)
+++|.+.|..|
T Consensus 266 ~~~l~~~~~~~ 276 (355)
T TIGR02397 266 LDEILESGVDP 276 (355)
T ss_pred HHHHHHcCCCH
Confidence 88888877544
No 427
>PRK10941 hypothetical protein; Provisional
Probab=36.44 E-value=1.5e+02 Score=28.23 Aligned_cols=56 Identities=14% Similarity=0.088 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHh----HHHHHhhcCCHHHHHHHHHHhhcC
Q 037477 518 KTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEP----FVQYISKFGTVEDASEFLKALSVK 575 (639)
Q Consensus 518 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~----~~~ll~~~g~~~~a~~~~~~~~~~ 575 (639)
+.+-.+|.+.++++.|+.+.+.+.. +.|+... -..++.+.|....|..-++...+.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 4444455555666666666655554 3343221 122334555555555555555544
No 428
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=35.75 E-value=84 Score=22.23 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=28.3
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 037477 406 PDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCA 455 (639)
Q Consensus 406 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~ 455 (639)
|....++.++..+++..-.++++..+.+..+.|. .+..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 4445566666666666666666666666666664 255555555555544
No 429
>PRK13342 recombination factor protein RarA; Reviewed
Probab=35.56 E-value=5.1e+02 Score=26.60 Aligned_cols=29 Identities=21% Similarity=0.216 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 037477 298 EMDIDTYIKISRQFQKFRMMEDAVKLFEFMM 328 (639)
Q Consensus 298 ~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 328 (639)
..+......++... .|+...++.+++...
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~ 201 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAA 201 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 44444454444432 677777777776654
No 430
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=35.43 E-value=4.3e+02 Score=25.73 Aligned_cols=145 Identities=19% Similarity=0.099 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037477 459 VDRALLCFAKMMEKNY----DADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAM 534 (639)
Q Consensus 459 ~~~a~~~~~~m~~~g~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 534 (639)
.+.|.+.|+.....+. ..+...-..++....+.|..+.-..+++.... .++......++.+++...+.+...
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~----~~~~~~k~~~l~aLa~~~d~~~~~ 221 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN----STSPEEKRRLLSALACSPDPELLK 221 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT----TSTHHHHHHHHHHHTT-S-HHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc----cCCHHHHHHHHHhhhccCCHHHHH
Confidence 4567788888877422 45667777778888888886654444444432 346777889999999999998888
Q ss_pred HHHHHHHhCC-CCCChHh-HHHHHhhcCCH--HHHHHHHH----HhhcCCCCCHHHHHHHHHH----HHhcCCHHHHHHH
Q 037477 535 NLLRLMKKQN-YPPFPEP-FVQYISKFGTV--EDASEFLK----ALSVKEYPSSAAYLQVFES----FFNEGRHYEAKDL 602 (639)
Q Consensus 535 ~~~~~m~~~~-~~p~~~~-~~~ll~~~g~~--~~a~~~~~----~~~~~~~~~~~~~~~l~~~----~~~~g~~~~A~~~ 602 (639)
++++.....+ +++.... ....+...+.. +.+.+++. .+.+..+.+......++.. ++.....++..++
T Consensus 222 ~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~f 301 (324)
T PF11838_consen 222 RLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKENWDAIIKKFGTNSSALSRVIKSFAGNFSTEEQLDELEEF 301 (324)
T ss_dssp HHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-TTSHCCHHHHHCCCTT--SHHHHHHHHHH
T ss_pred HHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 9999988854 5544432 22223323333 56655544 4444444333244444444 3445566667777
Q ss_pred HhhCC
Q 037477 603 LYKCP 607 (639)
Q Consensus 603 ~~~m~ 607 (639)
++..+
T Consensus 302 ~~~~~ 306 (324)
T PF11838_consen 302 FEDKP 306 (324)
T ss_dssp HHHHC
T ss_pred HhhCc
Confidence 75543
No 431
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=34.77 E-value=1.6e+02 Score=22.49 Aligned_cols=18 Identities=22% Similarity=0.056 Sum_probs=9.3
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 037477 524 LLGARRLEEAMNLLRLMK 541 (639)
Q Consensus 524 ~~~~g~~~~A~~~~~~m~ 541 (639)
....|++++|.+.+++..
T Consensus 51 ~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 344455555555555544
No 432
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=34.41 E-value=73 Score=22.53 Aligned_cols=52 Identities=17% Similarity=0.320 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 037477 263 KHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFR 315 (639)
Q Consensus 263 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 315 (639)
.|....++-++..+++..-.+++...+++..+.|. .+..+|..-++.+++..
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaReQ 56 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAREQ 56 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHH
Confidence 56777888889999888889999999999998884 57788877777776543
No 433
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=34.12 E-value=1.8e+02 Score=27.24 Aligned_cols=54 Identities=15% Similarity=0.120 Sum_probs=25.0
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037477 484 LINGFLSQKRVNGAYKLLVEMIEKVRL----RPWQATFKTLIEKLLGARRLEEAMNLL 537 (639)
Q Consensus 484 li~~~~~~g~~~~A~~~~~~m~~~~~~----~p~~~~~~~li~~~~~~g~~~~A~~~~ 537 (639)
+..-|.+.|++++|.++|+.+...+.- .+...+...+..++.+.|+.+..+.+-
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 334455556666666666555432221 111223334444445555555554443
No 434
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=34.04 E-value=4.4e+02 Score=27.81 Aligned_cols=61 Identities=11% Similarity=0.053 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 037477 412 SQVIFGLCKAGRFEDACNVLDEMEENGCI-PDIKTWTILIQGHCAANEVDRALLCFAKMMEK 472 (639)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 472 (639)
..++.-|.+.+++++|..++..|-=.... --..+.+.+.+.+.+..--++....++.+...
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 34555666666666666666665411000 01123334444444544344444445555443
No 435
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=34.01 E-value=2.8e+02 Score=25.82 Aligned_cols=62 Identities=18% Similarity=0.254 Sum_probs=45.3
Q ss_pred cCCHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCccccCChhHHHhh
Q 037477 559 FGTVEDASEFLKALSVK--EYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHHIRQDSKISLLF 620 (639)
Q Consensus 559 ~g~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~ 620 (639)
..++...-.++++|... ..|+......+++.|.+..+--.|...++.+.-..-.+...+.++
T Consensus 209 ~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~~clPd~Lrd~tfs~~l 272 (293)
T KOG3036|consen 209 AERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALRSCLPDQLRDGTFSLLL 272 (293)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHhhCcchhccchHHHHH
Confidence 34555556677777655 678999999999999999999999999999844444444444443
No 436
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=33.58 E-value=1.1e+03 Score=30.10 Aligned_cols=96 Identities=14% Similarity=0.072 Sum_probs=57.3
Q ss_pred ccChHHHHHHHHHHh-ccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037477 243 RIYPVKALGFFRWVG-EHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAV 321 (639)
Q Consensus 243 ~~~~~~A~~~f~~~~-~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 321 (639)
.+.+..|+-.++.-. ....-.-...-|-.+...|+..+++|...-+...-.. +...+. -|-.....|+|..|.
T Consensus 1396 c~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~-qil~~e~~g~~~da~ 1469 (2382)
T KOG0890|consen 1396 CKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQ-QILEHEASGNWADAA 1469 (2382)
T ss_pred hHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHH-HHHHHHhhccHHHHH
Confidence 456777887777620 0000111233444455589999999988877764221 222233 344456789999999
Q ss_pred HHHHHhhcCCCCCC-HHHHHHHHHHH
Q 037477 322 KLFEFMMDGPYKPS-VQDCSLLLRSI 346 (639)
Q Consensus 322 ~l~~~m~~~g~~p~-~~~~~~ll~~~ 346 (639)
.-|+.+.+. .|+ ..+++-+++..
T Consensus 1470 ~Cye~~~q~--~p~~~~~~~g~l~sm 1493 (2382)
T KOG0890|consen 1470 ACYERLIQK--DPDKEKHHSGVLKSM 1493 (2382)
T ss_pred HHHHHhhcC--CCccccchhhHHHhh
Confidence 999999876 444 44555554443
No 437
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.44 E-value=3.9e+02 Score=26.83 Aligned_cols=36 Identities=8% Similarity=0.021 Sum_probs=23.9
Q ss_pred HhhhCCCCCHHHHHHHHHhcCCChHHHHHHHHHHhh
Q 037477 86 LEELSPKLTHESVVYVLRKLDNDPEKASAFFNWVCD 121 (639)
Q Consensus 86 l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~ 121 (639)
++..+..+++..+........|++..|...++....
T Consensus 191 ~~~~g~~i~~~al~~ia~~s~G~~R~al~~l~~~~~ 226 (363)
T PRK14961 191 LIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAIN 226 (363)
T ss_pred HHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 334455677776666666667788888888876543
No 438
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=32.45 E-value=7.8e+02 Score=27.82 Aligned_cols=202 Identities=11% Similarity=-0.004 Sum_probs=106.3
Q ss_pred CHHHHHHHHHHhccChHHHHHHHHHHhcc---CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 037477 231 SDNFVLTVLKELRIYPVKALGFFRWVGEH---SGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKI 307 (639)
Q Consensus 231 ~~~~~~~~l~~~~~~~~~A~~~f~~~~~~---~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 307 (639)
.++.+-.++...++++++|.++-+....+ ....+.+..+..+..+..-.|++++|..+..+..+..-.-++..+...
T Consensus 459 e~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~ 538 (894)
T COG2909 459 EFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALW 538 (894)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 44556666666788888888887766432 223456777888888888899999999988877664333344443332
Q ss_pred H-----HHHHhcCC--HHHHHHHHHHhhcC--CCC----CCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCCh-
Q 037477 308 S-----RQFQKFRM--MEDAVKLFEFMMDG--PYK----PSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSK- 373 (639)
Q Consensus 308 i-----~~~~~~g~--~~~a~~l~~~m~~~--g~~----p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 373 (639)
. ..+...|+ +.+....|...... +-+ +-..++..++.++.+.. ....++..-+..-......+-.
T Consensus 539 ~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~-~~~~ear~~~~~~~~~~~~~~~~ 617 (894)
T COG2909 539 SLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLD-LAEAEARLGIEVGSVYTPQPLLS 617 (894)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHh-hhhHHhhhcchhhhhcccchhHH
Confidence 2 23455663 33333334333221 011 22344455555554411 1111111111111111111111
Q ss_pred -hhHHHHHHHHHccCChhHHHHHHHHHHHCCCCC----CHHhHHHHHHH--HHhcCCHHHHHHHHHH
Q 037477 374 -SVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEP----DNITYSQVIFG--LCKAGRFEDACNVLDE 433 (639)
Q Consensus 374 -~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~----~~~~~~~li~~--~~~~g~~~~A~~~~~~ 433 (639)
..+..++..+...|++++|...++++......+ +-.+-...+.. ....|+.+.+.....+
T Consensus 618 ~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 618 RLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 122356777888899999999888887653333 22222222222 2346777776665554
No 439
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=32.08 E-value=4.9e+02 Score=25.38 Aligned_cols=51 Identities=18% Similarity=0.266 Sum_probs=22.7
Q ss_pred HcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037477 489 LSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRL 539 (639)
Q Consensus 489 ~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 539 (639)
.+.|+..+|.+.|+++.+...+..-......+|++|....-+.+...++-+
T Consensus 286 RklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 286 RKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred HHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666655554422211122233445555544444444444433
No 440
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.43 E-value=3.9e+02 Score=24.00 Aligned_cols=88 Identities=19% Similarity=0.183 Sum_probs=49.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH-----HHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 037477 451 QGHCAANEVDRALLCFAKMMEKNYDADADLLDV-----LINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLL 525 (639)
Q Consensus 451 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~ 525 (639)
..+...|++++|...++..+..- ....+.. |-......|.+|+|+..++...+. +..+ .....--+.+.
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t---~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~--~~~elrGDill 170 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQT---KDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-SWAA--IVAELRGDILL 170 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccc---hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHHH--HHHHHhhhHHH
Confidence 45666777777777776665431 1222222 334556677777777777765443 1111 11112235667
Q ss_pred hcCCHHHHHHHHHHHHhCC
Q 037477 526 GARRLEEAMNLLRLMKKQN 544 (639)
Q Consensus 526 ~~g~~~~A~~~~~~m~~~~ 544 (639)
..|+.++|..-|+...+.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 7777777777777777654
No 441
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=31.21 E-value=2.1e+02 Score=22.79 Aligned_cols=31 Identities=16% Similarity=0.169 Sum_probs=19.3
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCCCHHh
Q 037477 379 IHRALTKLGRFDEAEKMMKAMKNAGFEPDNIT 410 (639)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 410 (639)
+|+-+.++...++|+++++-|.+.| ..+...
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~ 97 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEE 97 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHH
Confidence 4555666677777777777777766 344433
No 442
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=30.88 E-value=5.4e+02 Score=28.45 Aligned_cols=31 Identities=3% Similarity=-0.166 Sum_probs=19.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC
Q 037477 304 YIKISRQFQKFRMMEDAVKLFEFMMDGPYKPS 335 (639)
Q Consensus 304 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~ 335 (639)
...++.++.. ++...++.+++++...|+.+.
T Consensus 249 If~LldAL~~-~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 249 LYELLTGIIN-QDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHH
Confidence 3344444433 777778888888877776554
No 443
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=30.78 E-value=3e+02 Score=22.57 Aligned_cols=71 Identities=10% Similarity=0.147 Sum_probs=46.2
Q ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 037477 249 ALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDI-DTYIKISRQFQKFRMMEDAVKLFE 325 (639)
Q Consensus 249 A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~l~~ 325 (639)
+.+.|... ...+-|..-...-|..--. .++..++|..|..+|+.... ..|......+-..|++.+|.++|+
T Consensus 52 c~~~f~~~---~~YknD~RyLkiWi~ya~~---~~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 52 CIRYFEDD---ERYKNDPRYLKIWLKYADN---CDEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHhhhh---hhhcCCHHHHHHHHHHHHh---cCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45555443 3345555443333332222 24578899999999876654 457777888888999999999986
No 444
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=30.65 E-value=3.2e+02 Score=26.44 Aligned_cols=43 Identities=7% Similarity=0.143 Sum_probs=20.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 037477 429 NVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMME 471 (639)
Q Consensus 429 ~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 471 (639)
++++.|...++.|.-..+.-+.-.+.+.=.+.+++.+|+.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 3444444444555444444444444444444445555554443
No 445
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.62 E-value=6.6e+02 Score=27.69 Aligned_cols=77 Identities=6% Similarity=-0.025 Sum_probs=45.5
Q ss_pred HHHHhhhCCCCCHHHHHHHHHhcCCChHHHHHHHHHHhhcCCC-------------CCChHHHHHHHHHHhccCChHHHH
Q 037477 83 ENKLEELSPKLTHESVVYVLRKLDNDPEKASAFFNWVCDKKQF-------------RPSSTVYSLMLRNLVNKDSLKQFW 149 (639)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~-------------~~~~~~~~~li~~~~~~~~~~~a~ 149 (639)
...+..-+...+...+..+.....|++..|+.+++.+.. .|- ..+....-.++.++.+ ++...++
T Consensus 187 ~~Il~kEgI~id~eAL~~IA~~S~GdLRdALnLLDQaIa-yg~g~IT~edV~~lLG~~d~e~IfdLldAI~k-~d~~~al 264 (702)
T PRK14960 187 GAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIA-YGQGAVHHQDVKEMLGLIDRTIIYDLILAVHQ-NQREKVS 264 (702)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH-hcCCCcCHHHHHHHhccCCHHHHHHHHHHHHh-cCHHHHH
Confidence 344455567788888888777778899999998877654 221 0111122233333333 4555666
Q ss_pred HHHHHHHhcCCC
Q 037477 150 VTLRRMKEDHCY 161 (639)
Q Consensus 150 ~l~~~m~~~g~~ 161 (639)
.+++++.+.|..
T Consensus 265 ~~L~el~~~g~d 276 (702)
T PRK14960 265 QLLLQFRYQALD 276 (702)
T ss_pred HHHHHHHHhCCC
Confidence 666666666543
No 446
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.52 E-value=4.7e+02 Score=24.70 Aligned_cols=129 Identities=9% Similarity=0.094 Sum_probs=69.5
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHC-CCCCCHH----hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----
Q 037477 372 SKSVYDGIHRALTKLGRFDEAEKMMKAMKNA-GFEPDNI----TYSQVIFGLCKAGRFEDACNVLDEMEENGCIP----- 441 (639)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p----- 441 (639)
+.-..|++++-.+...+.+.-.+.++.-.+. .-..+.. |-+-|...|...|.+.+...++.++...--.-
T Consensus 104 SEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD 183 (440)
T KOG1464|consen 104 SEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDD 183 (440)
T ss_pred cHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchh
Confidence 3445677777666666666666655543221 0011111 22446666777777777777777776531111
Q ss_pred ------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH-----HcCCChhHHHHHH
Q 037477 442 ------DIKTWTILIQGHCAANEVDRALLCFAKMMEK-NYDADADLLDVLINGF-----LSQKRVNGAYKLL 501 (639)
Q Consensus 442 ------~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~-----~~~g~~~~A~~~~ 501 (639)
-...|..=|+.|....+-.+-..++++.+.- .--|...... +|.-| .+.|.+++|-.-|
T Consensus 184 ~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDF 254 (440)
T KOG1464|consen 184 QKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDF 254 (440)
T ss_pred hhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHH
Confidence 1245666677777777777777777766542 2234333332 33322 3456666655433
No 447
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=30.14 E-value=4.4e+02 Score=24.24 Aligned_cols=55 Identities=11% Similarity=0.187 Sum_probs=27.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH----HHHcCCChhHHHHHHHH
Q 037477 449 LIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLIN----GFLSQKRVNGAYKLLVE 503 (639)
Q Consensus 449 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~----~~~~~g~~~~A~~~~~~ 503 (639)
-|......|+++.|.+....+-..-+.-|...+-.|.. -..+.|..++|+++.+.
T Consensus 70 ~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 70 QIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHhccHHHHHHHHHHhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 44555666666666666665544333333323222221 23455566666666654
No 448
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=29.92 E-value=2.8e+02 Score=24.18 Aligned_cols=59 Identities=5% Similarity=0.119 Sum_probs=39.3
Q ss_pred ccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 037477 258 EHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMM 317 (639)
Q Consensus 258 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 317 (639)
+..|++.+..-. .++..+...++.-.|.++++.+.+.+..++..|-...+..+...|-+
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 345666554433 45555656666778888899988888777777766666666666644
No 449
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=29.73 E-value=2.2e+02 Score=24.01 Aligned_cols=61 Identities=8% Similarity=-0.034 Sum_probs=32.5
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 037477 432 DEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKR 493 (639)
Q Consensus 432 ~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 493 (639)
+.+.+.|.+++. --..++..+...++.-.|.++++++.+.+...+..|.-.-++.+...|-
T Consensus 10 ~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 10 ERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 344455555433 2334555555555556666666666666555555554444555555553
No 450
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=29.45 E-value=1.3e+02 Score=18.18 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHh
Q 037477 582 AYLQVFESFFNEGRHYEAKDLLY 604 (639)
Q Consensus 582 ~~~~l~~~~~~~g~~~~A~~~~~ 604 (639)
.+-.+.-.+...|++++|.+++.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 34566777888999999999944
No 451
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=29.26 E-value=3.3e+02 Score=26.30 Aligned_cols=58 Identities=9% Similarity=0.032 Sum_probs=44.5
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 037477 463 LLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLG 526 (639)
Q Consensus 463 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 526 (639)
.++|+.|.+.++.|.-..+..+.-.+.+.=.+.+.+.+|+.+... ..-|..++..|+.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD------~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD------PQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC------hhhhHHHHHHHHH
Confidence 568888888888998888888877788888888999999887653 2236666666664
No 452
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=29.18 E-value=1.3e+02 Score=20.18 Aligned_cols=20 Identities=10% Similarity=-0.017 Sum_probs=9.0
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 037477 523 KLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 523 ~~~~~g~~~~A~~~~~~m~~ 542 (639)
++.+.|++++|.+..+.+.+
T Consensus 10 g~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 34444455555554444444
No 453
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=28.99 E-value=2.6e+02 Score=21.22 Aligned_cols=13 Identities=15% Similarity=0.133 Sum_probs=4.8
Q ss_pred CHHHHHHHHHHHH
Q 037477 423 RFEDACNVLDEME 435 (639)
Q Consensus 423 ~~~~A~~~~~~m~ 435 (639)
+.+.|.+++..+.
T Consensus 51 ~~~~ar~LL~~L~ 63 (88)
T cd08819 51 NESGARELLKRIV 63 (88)
T ss_pred cHHHHHHHHHHhc
Confidence 3333333333333
No 454
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=28.94 E-value=3.1e+02 Score=23.90 Aligned_cols=43 Identities=12% Similarity=-0.086 Sum_probs=19.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 037477 415 IFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAAN 457 (639)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g 457 (639)
+..+...++.-.|.++++.+.+.+...+..|.-..|..+...|
T Consensus 32 L~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 32 LRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 3333333444455555555555554444444333444444444
No 455
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=28.81 E-value=2.6e+02 Score=21.20 Aligned_cols=64 Identities=16% Similarity=0.136 Sum_probs=28.8
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037477 463 LLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEA 533 (639)
Q Consensus 463 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 533 (639)
.++++.+.+.|+- +......+-.+-...|+.+.|.+++..+. + .|+ -|..++.++...|.-.-|
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-r---g~~--aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-Q---KEG--WFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-c---CCc--HHHHHHHHHHHcCchhhh
Confidence 3445555555432 22222222222234455556666665554 3 233 455555555555544333
No 456
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=28.65 E-value=9.7e+02 Score=27.74 Aligned_cols=246 Identities=10% Similarity=-0.013 Sum_probs=127.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHH
Q 037477 298 EMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYD 377 (639)
Q Consensus 298 ~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (639)
.+|..+-...+..+.+.+..+ +...+....+ .++..+-...+.++....... ... ..+..... .+|..+-.
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~-~~~-~~L~~~L~---~~d~~VR~ 702 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVL-PPA-PALRDHLG---SPDPVVRA 702 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhcc-Cch-HHHHHHhc---CCCHHHHH
Confidence 447777777777777766544 4444444443 234444444444444332100 001 11111111 14555555
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 037477 378 GIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAAN 457 (639)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g 457 (639)
..+.++...+..+ ...+...+. .+|...-...+.++.+.+..+. +..... .++...-...+.++...+
T Consensus 703 ~A~~aL~~~~~~~-~~~l~~~L~----D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~ 770 (897)
T PRK13800 703 AALDVLRALRAGD-AALFAAALG----DPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLG 770 (897)
T ss_pred HHHHHHHhhccCC-HHHHHHHhc----CCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhc
Confidence 6666666544222 222333332 4566666666777766655432 222222 356777777777777777
Q ss_pred CHHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037477 458 EVDR-ALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNL 536 (639)
Q Consensus 458 ~~~~-a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 536 (639)
..+. +...+..+.+ .+|...-...+.++.+.|..+.+...+....+. ++...-...+.++.+.+. +++...
T Consensus 771 ~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d----~d~~VR~~Aa~aL~~l~~-~~a~~~ 842 (897)
T PRK13800 771 AGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRA----SAWQVRQGAARALAGAAA-DVAVPA 842 (897)
T ss_pred cccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC----CChHHHHHHHHHHHhccc-cchHHH
Confidence 5443 3444545543 346777778888888888765554444444432 355566667777877775 456666
Q ss_pred HHHHHhCCCCCChHhHHHHH---hhcCCHHHHHHHHHHhhcC
Q 037477 537 LRLMKKQNYPPFPEPFVQYI---SKFGTVEDASEFLKALSVK 575 (639)
Q Consensus 537 ~~~m~~~~~~p~~~~~~~ll---~~~g~~~~a~~~~~~~~~~ 575 (639)
+-.+.+ .|+...-.... ...+.-..+...+....+.
T Consensus 843 L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D 881 (897)
T PRK13800 843 LVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALTD 881 (897)
T ss_pred HHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhC
Confidence 666653 24443333333 3322234566666655553
No 457
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=28.53 E-value=4.6e+02 Score=25.76 Aligned_cols=87 Identities=7% Similarity=0.008 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHH--
Q 037477 413 QVIFGLCKAGRFEDACNVLDEMEENGCIPDI-----KTWTILIQGHCAANEVDRALLCFAKMME-----KNYDADADL-- 480 (639)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~-- 480 (639)
.++...-+.++.++|.+.++++.+.-..-+. ..-+.+...+...|+..++.+++++..+ .|++|++.+
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Q ss_pred HHHHHHHHHcCCChhHHHH
Q 037477 481 LDVLINGFLSQKRVNGAYK 499 (639)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~ 499 (639)
|..=-..|-..|++....+
T Consensus 160 Y~lssqYyk~~~d~a~yYr 178 (380)
T KOG2908|consen 160 YSLSSQYYKKIGDFASYYR 178 (380)
T ss_pred HHHHHHHHHHHHhHHHHHH
No 458
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.41 E-value=5.1e+02 Score=27.46 Aligned_cols=77 Identities=12% Similarity=0.038 Sum_probs=46.3
Q ss_pred HHHhhhCCCCCHHHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCCh------------HHHHHHHHHHhccCChHHHHHH
Q 037477 84 NKLEELSPKLTHESVVYVLRKLDNDPEKASAFFNWVCDKKQFRPSS------------TVYSLMLRNLVNKDSLKQFWVT 151 (639)
Q Consensus 84 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~------------~~~~~li~~~~~~~~~~~a~~l 151 (639)
..++..+...+.+.+..+.....|++..|...++.+.. .+-..+. .....+++++ ..+++++|+.+
T Consensus 186 ~i~~~egi~i~~~Al~~ia~~s~GdlR~aln~Lekl~~-~~~~It~~~V~~~l~~~~~~~if~Li~al-~~~d~~~Al~~ 263 (504)
T PRK14963 186 RLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLA-LGTPVTRKQVEEALGLPPQERLRGIAAAL-AQGDAAEALSG 263 (504)
T ss_pred HHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHCCCcHHHHHHHHHHH-HcCCHHHHHHH
Confidence 33444566677777777777778888888888877654 2211111 1122333444 34677777777
Q ss_pred HHHHHhcCCCC
Q 037477 152 LRRMKEDHCYI 162 (639)
Q Consensus 152 ~~~m~~~g~~~ 162 (639)
+++|...|..|
T Consensus 264 l~~Ll~~G~~~ 274 (504)
T PRK14963 264 AAQLYRDGFAA 274 (504)
T ss_pred HHHHHHcCCCH
Confidence 77777777443
No 459
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=28.28 E-value=1.4e+02 Score=20.98 Aligned_cols=39 Identities=18% Similarity=0.153 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCCh
Q 037477 91 PKLTHESVVYVLRKLDNDPEKASAFFNWVCDKKQFRPSS 129 (639)
Q Consensus 91 ~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~ 129 (639)
..+........|....-|++.|+..|..+.....++|+.
T Consensus 23 Tgmn~~~s~~cLe~~~Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 23 TGMNAEYSQMCLEDNNWDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred HCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCChhh
Confidence 345555555566655557788888888877644454443
No 460
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=28.25 E-value=5.4e+02 Score=24.67 Aligned_cols=98 Identities=11% Similarity=0.136 Sum_probs=57.3
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHH----CCCCCCHHhHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---
Q 037477 372 SKSVYDGIHRALTKLGRFDEAEKMMKAMKN----AGFEPDNITYSQ-VIFGLCKAGRFEDACNVLDEMEENGCIPDI--- 443 (639)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--- 443 (639)
-...+..+..-|++.++.+.+.+...+..+ .|.+.|+....+ |.-.|....-+++-++..+.|.+.|...+.
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 344566778888998988888877666543 455555533222 222233334466777788888888765432
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 037477 444 -KTWTILIQGHCAANEVDRALLCFAKMME 471 (639)
Q Consensus 444 -~t~~~li~~~~~~g~~~~a~~~~~~m~~ 471 (639)
.+|-.+- +....++.+|-.++-+...
T Consensus 194 yK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 194 YKVYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 2333322 2234566777776666554
No 461
>PRK09687 putative lyase; Provisional
Probab=28.24 E-value=5.4e+02 Score=24.68 Aligned_cols=17 Identities=18% Similarity=-0.007 Sum_probs=7.4
Q ss_pred CChHHHHHHHHHHhccC
Q 037477 127 PSSTVYSLMLRNLVNKD 143 (639)
Q Consensus 127 ~~~~~~~~li~~~~~~~ 143 (639)
+|....-..+..+...|
T Consensus 35 ~d~~vR~~A~~aL~~~~ 51 (280)
T PRK09687 35 HNSLKRISSIRVLQLRG 51 (280)
T ss_pred CCHHHHHHHHHHHHhcC
Confidence 34444444444444443
No 462
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.24 E-value=7.9e+02 Score=26.61 Aligned_cols=78 Identities=9% Similarity=-0.015 Sum_probs=49.0
Q ss_pred HHHHhhhCCCCCHHHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCChHHHH------------HHHHHHhccCChHHHHH
Q 037477 83 ENKLEELSPKLTHESVVYVLRKLDNDPEKASAFFNWVCDKKQFRPSSTVYS------------LMLRNLVNKDSLKQFWV 150 (639)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~------------~li~~~~~~~~~~~a~~ 150 (639)
...++..+..++...+..+.....|++..|+.+++.+....|-..+..... .++.++ ..++...++.
T Consensus 188 ~~i~~~egi~i~~~al~~la~~a~G~lr~al~~Ldqliay~g~~It~edV~~llG~~~~~~l~~ll~al-~~~d~~~al~ 266 (576)
T PRK14965 188 RYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCGDAVGDDDVAELLGVVDRRLLLDISAAV-FGRDTRALLE 266 (576)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHH
Confidence 334445667788888888777778999999999987755222222222222 222222 3466777888
Q ss_pred HHHHHHhcCCC
Q 037477 151 TLRRMKEDHCY 161 (639)
Q Consensus 151 l~~~m~~~g~~ 161 (639)
+++++...|..
T Consensus 267 ~l~~l~~~G~~ 277 (576)
T PRK14965 267 IVERVDEFGYN 277 (576)
T ss_pred HHHHHHHhCCC
Confidence 88887777753
No 463
>COG5210 GTPase-activating protein [General function prediction only]
Probab=28.12 E-value=5.6e+02 Score=27.12 Aligned_cols=55 Identities=7% Similarity=0.037 Sum_probs=40.4
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 037477 428 CNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLD 482 (639)
Q Consensus 428 ~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 482 (639)
-+++..|...|+.+...++..++..+.+....+.+.++|+.+.-.|.......+.
T Consensus 362 p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~l~~~~~ 416 (496)
T COG5210 362 PELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLAL 416 (496)
T ss_pred HHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3566777778888888888888888888888888888888887777544333333
No 464
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=27.82 E-value=6.2e+02 Score=26.39 Aligned_cols=74 Identities=8% Similarity=0.144 Sum_probs=46.3
Q ss_pred hhhCCCCCHHHHHHHHHhcCCChHHHHHHHHHHhhcCC-------------CCCChHHHHHHHHHHhccCChHHHHHHHH
Q 037477 87 EELSPKLTHESVVYVLRKLDNDPEKASAFFNWVCDKKQ-------------FRPSSTVYSLMLRNLVNKDSLKQFWVTLR 153 (639)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~-------------~~~~~~~~~~li~~~~~~~~~~~a~~l~~ 153 (639)
+..+...+.+.+...+....|++..|...++.+....+ ..+....| .+++ ....+++++|+.+++
T Consensus 194 ~~eg~~i~~~al~~L~~~s~gdlr~a~~~Lekl~~~~~~~It~~~V~~l~~~~~~~~vf-~L~~-ai~~~d~~~al~~l~ 271 (451)
T PRK06305 194 KQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLFPKSLDPDSVAKALGLLSQDSLY-TLDE-AITTQNYAQALEPVT 271 (451)
T ss_pred HHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHHCCCCHHHHH-HHHH-HHHcCCHHHHHHHHH
Confidence 34466778888877777778889998888886543111 11111122 3333 334577888888888
Q ss_pred HHHhcCCCC
Q 037477 154 RMKEDHCYI 162 (639)
Q Consensus 154 ~m~~~g~~~ 162 (639)
+|...|..|
T Consensus 272 ~L~~~g~~~ 280 (451)
T PRK06305 272 DAMNSGVAP 280 (451)
T ss_pred HHHHcCcCH
Confidence 888777543
No 465
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=27.71 E-value=4.6e+02 Score=23.64 Aligned_cols=28 Identities=7% Similarity=0.114 Sum_probs=16.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037477 410 TYSQVIFGLCKAGRFEDACNVLDEMEEN 437 (639)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 437 (639)
..+.++..|...|+++.|.+.|.-+...
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 3455566666666666666666665543
No 466
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=26.89 E-value=8e+02 Score=26.21 Aligned_cols=182 Identities=13% Similarity=0.016 Sum_probs=118.7
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHH
Q 037477 407 DNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNY--DADADLLDVL 484 (639)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~l 484 (639)
+..+|+.-+.--.+.|+.+.+.-+|++..-- +..=...|--.+.-....|+.+-|..++....+--+ .|....+.+.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 4567888888888999999999998887531 011223455555555666998888887776665322 3444444444
Q ss_pred HHHHHcCCChhHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHH---HHHHHHHhCCCCCChHh--HHH---H
Q 037477 485 INGFLSQKRVNGAYKLLVEMIEKVRLRPWQA-TFKTLIEKLLGARRLEEAM---NLLRLMKKQNYPPFPEP--FVQ---Y 555 (639)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~---~~~~~m~~~~~~p~~~~--~~~---l 555 (639)
+ .-..|+++.|..+++.+.+.. |+.. .-..-+....+.|..+.+. +++.........+.... +.. +
T Consensus 375 f--~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 375 F--EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARL 449 (577)
T ss_pred H--HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHH
Confidence 4 345689999999999998762 5522 1122233455678888777 44444443222222111 111 1
Q ss_pred -HhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 037477 556 -ISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEG 594 (639)
Q Consensus 556 -l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 594 (639)
..-+++.+.|..++.++.+..+++...|..+++.....+
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 134589999999999999999999999999888877665
No 467
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=26.82 E-value=1.3e+02 Score=21.12 Aligned_cols=32 Identities=13% Similarity=0.013 Sum_probs=17.2
Q ss_pred HHHHHHHhccChHHHHHHHHHHhccCCCCCCH
Q 037477 235 VLTVLKELRIYPVKALGFFRWVGEHSGYKHNT 266 (639)
Q Consensus 235 ~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p~~ 266 (639)
....+....-+++.|+..|..+..+..++|+.
T Consensus 30 s~~cLe~~~Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 30 SQMCLEDNNWDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCCChhh
Confidence 33344444556666666666665445555543
No 468
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=26.76 E-value=9.6e+02 Score=27.05 Aligned_cols=35 Identities=9% Similarity=-0.025 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC
Q 037477 300 DIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPS 335 (639)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~ 335 (639)
|...+..++..+ ..++..+++.+++++...|+.+.
T Consensus 245 d~~~i~~ll~aL-~~~d~~~~l~~~~~l~~~g~~~~ 279 (830)
T PRK07003 245 DQTYMVRLLDAL-AAGDGPEILAVADEMALRSLSFS 279 (830)
T ss_pred CHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCHH
Confidence 333344444433 34777777777777777666543
No 469
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=26.58 E-value=5.1e+02 Score=23.84 Aligned_cols=63 Identities=17% Similarity=0.148 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHH--HHHHHHHcCCChhHHHHHHHHHH
Q 037477 441 PDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDA---DADLLD--VLINGFLSQKRVNGAYKLLVEMI 505 (639)
Q Consensus 441 p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~---~~~~~~--~li~~~~~~g~~~~A~~~~~~m~ 505 (639)
++..-+|.||--|.-...+.+|.+.|.. +.|+.| |..+++ .-|......|++++|++....+.
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC
Confidence 4444555555555444444444444432 233333 333332 23445566677777776666553
No 470
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.54 E-value=2.7e+02 Score=20.62 Aligned_cols=30 Identities=17% Similarity=0.204 Sum_probs=19.2
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCCCHH
Q 037477 379 IHRALTKLGRFDEAEKMMKAMKNAGFEPDNI 409 (639)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 409 (639)
+++-+.++.-.++|+++++-|.+.| ..+..
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrG-Ei~~E 66 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRG-EITPE 66 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHH
Confidence 4555666677777777777777766 34443
No 471
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=26.47 E-value=3.1e+02 Score=25.72 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=12.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 037477 414 VIFGLCKAGRFEDACNVLDEM 434 (639)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m 434 (639)
+..-|.+.|++++|.++|+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 445555666666666666555
No 472
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=26.47 E-value=3.3e+02 Score=21.64 Aligned_cols=81 Identities=14% Similarity=0.227 Sum_probs=44.0
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 037477 386 LGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLC 465 (639)
Q Consensus 386 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~ 465 (639)
....++|..+.+.+...+. -...+--+-+..+...|++++|+ .. ......||...|-+|-. .+.|..+++...
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~AL---l~-~~~~~~pdL~p~~AL~a--~klGL~~~~e~~ 91 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEAL---LL-PQCHCYPDLEPWAALCA--WKLGLASALESR 91 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHH---HH-HTTS--GGGHHHHHHHH--HHCT-HHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHH---Hh-cccCCCccHHHHHHHHH--HhhccHHHHHHH
Confidence 3456777777777776542 12222223344566778888872 11 12223467777765544 477777777777
Q ss_pred HHHHHHcC
Q 037477 466 FAKMMEKN 473 (639)
Q Consensus 466 ~~~m~~~g 473 (639)
+.++...|
T Consensus 92 l~rla~~g 99 (116)
T PF09477_consen 92 LTRLASSG 99 (116)
T ss_dssp HHHHCT-S
T ss_pred HHHHHhCC
Confidence 77776665
No 473
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.37 E-value=7.7e+02 Score=25.86 Aligned_cols=114 Identities=11% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCChHHHHHHHH-----------HHhccCChHHH
Q 037477 80 DELENKLEELSPKLTHESVVYVLRKLDNDPEKASAFFNWVCDKKQFRPSSTVYSLMLR-----------NLVNKDSLKQF 148 (639)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~-----------~~~~~~~~~~a 148 (639)
..+.......+..++.+.+........|+...|+..++.+....+-.-+......++. -..+.++.+.|
T Consensus 183 ~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~~It~e~V~~~l~~~~~~~i~~li~si~~~d~~~A 262 (472)
T PRK14962 183 KRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHEALGLIPIEVVRDYINAIFNGDVKRV 262 (472)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHcCCHHHH
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchh------hHHHHHHHHHHH
Q 037477 149 WVTLRRMKEDHCYIEEETYLSILGVLKKAKKAS------DLAALNQFHDGM 193 (639)
Q Consensus 149 ~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~------~~~~~~~~~~~~ 193 (639)
+.++.+|...|..|....-..+..+.-..|..+ -+..+.+..+.+
T Consensus 263 l~~l~~ll~~Gedp~~i~r~l~~~~~edi~~a~~~~~~~~~~~~~~~~~~i 313 (472)
T PRK14962 263 FTVLDDVYYSGKDYEVLIQQAIEDLVEDLERERANDIIQVSRQLLNILREI 313 (472)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHh
No 474
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=26.35 E-value=2.8e+02 Score=26.87 Aligned_cols=29 Identities=28% Similarity=0.356 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHhcCCChHHHHHHHH-HHhh
Q 037477 93 LTHESVVYVLRKLDNDPEKASAFFN-WVCD 121 (639)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~A~~~f~-~~~~ 121 (639)
..-+.|.+.|+..-++|+.|.+++- -++.
T Consensus 147 y~re~V~~AlRAafNNPeRAVEYLl~GIP~ 176 (340)
T KOG0011|consen 147 YDREEVERALRAAFNNPERAVEYLLNGIPE 176 (340)
T ss_pred ccHHHHHHHHHHhhCChhhhHHHHhcCCcc
Confidence 7788888889888889999887653 4443
No 475
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=26.17 E-value=7e+02 Score=25.26 Aligned_cols=18 Identities=6% Similarity=0.215 Sum_probs=9.0
Q ss_pred ccCChhHHHHHHHHHHHC
Q 037477 385 KLGRFDEAEKMMKAMKNA 402 (639)
Q Consensus 385 ~~g~~~~A~~~~~~m~~~ 402 (639)
+.+++..|.++|+.+...
T Consensus 143 n~~~y~aA~~~l~~l~~r 160 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR 160 (379)
T ss_pred hcCCHHHHHHHHHHHHHh
Confidence 445555555555555443
No 476
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.13 E-value=6.1e+02 Score=26.91 Aligned_cols=74 Identities=11% Similarity=0.084 Sum_probs=40.7
Q ss_pred cCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCC------------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037477 259 HSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYE------------MDIDTYIKISRQFQKFRMMEDAVKLFEF 326 (639)
Q Consensus 259 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~------------p~~~~~~~li~~~~~~g~~~~a~~l~~~ 326 (639)
..|+..+......++... .|++..+...++.+...+-. +.......++.++ ..++.++|+.++++
T Consensus 190 ~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al-~~~d~~~Al~~l~~ 266 (504)
T PRK14963 190 AEGREAEPEALQLVARLA--DGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL-AQGDAAEALSGAAQ 266 (504)
T ss_pred HcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence 344444444444444332 35555555555554333211 1222333455554 55889999999999
Q ss_pred hhcCCCCCC
Q 037477 327 MMDGPYKPS 335 (639)
Q Consensus 327 m~~~g~~p~ 335 (639)
+...|..|.
T Consensus 267 Ll~~G~~~~ 275 (504)
T PRK14963 267 LYRDGFAAR 275 (504)
T ss_pred HHHcCCCHH
Confidence 988876554
No 477
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=25.58 E-value=3.1e+02 Score=20.92 Aligned_cols=18 Identities=22% Similarity=0.097 Sum_probs=8.6
Q ss_pred HHcCCChhHHHHHHHHHH
Q 037477 488 FLSQKRVNGAYKLLVEMI 505 (639)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~ 505 (639)
....|+.++|...+++..
T Consensus 51 ~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 334455555555554443
No 478
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.20 E-value=9.5e+02 Score=26.50 Aligned_cols=95 Identities=9% Similarity=0.030 Sum_probs=0.0
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHhcCCChHHHHHHHHHHhhcCCCCC------------ChHHHHHHHHHHhccCChHH
Q 037477 80 DELENKLEELSPKLTHESVVYVLRKLDNDPEKASAFFNWVCDKKQFRP------------SSTVYSLMLRNLVNKDSLKQ 147 (639)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~------------~~~~~~~li~~~~~~~~~~~ 147 (639)
..+...+..-+...+.+.+..+.+...|++..|+.+++.+....+-.. +......++..+. .++...
T Consensus 190 ~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsLLdQaia~~~~~It~~~V~~~LG~~d~~~i~~Ll~aL~-~~d~~~ 268 (700)
T PRK12323 190 SHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIAYSAGNVSEEAVRGMLGAIDQSYLVRLLDALA-AEDGAA 268 (700)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHHH-cCCHHH
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 037477 148 FWVTLRRMKEDHCYIEEETYLSILGVLKK 176 (639)
Q Consensus 148 a~~l~~~m~~~g~~~~~~t~~~ll~~~~~ 176 (639)
++.+.+++.+.|.. -...+..++..+.+
T Consensus 269 ~l~l~~~l~~~G~d-~~~~L~dLl~~l~~ 296 (700)
T PRK12323 269 LLAIADEMAGRSLS-FAGALQDLASLLQK 296 (700)
T ss_pred HHHHHHHHHHcCCC-HHHHHHHHHHHHHH
No 479
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=25.12 E-value=2e+02 Score=22.93 Aligned_cols=46 Identities=17% Similarity=0.281 Sum_probs=30.3
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 037477 272 ILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMM 317 (639)
Q Consensus 272 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 317 (639)
++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 4555555566667788888887777666766665666666666643
No 480
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=24.91 E-value=6.3e+02 Score=27.50 Aligned_cols=78 Identities=8% Similarity=0.107 Sum_probs=49.1
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHhcCCChHHHHHHHHHHhhcCC--------------CCCChHHHHHHHHHHhccCChHH
Q 037477 82 LENKLEELSPKLTHESVVYVLRKLDNDPEKASAFFNWVCDKKQ--------------FRPSSTVYSLMLRNLVNKDSLKQ 147 (639)
Q Consensus 82 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~--------------~~~~~~~~~~li~~~~~~~~~~~ 147 (639)
+...+++.+..++.+.+...+....|++..|...++.+.. .+ .......+ .++... ..|+...
T Consensus 200 L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al~~Ldkli~-~g~g~It~e~V~~llg~~~~~~if-~L~~ai-~~gd~~~ 276 (598)
T PRK09111 200 LSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQAIA-HGAGEVTAEAVRDMLGLADRARVI-DLFEAL-MRGDVAA 276 (598)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh-hcCCCcCHHHHHHHhCCCCHHHHH-HHHHHH-HcCCHHH
Confidence 3444555677888888888888888899999999887643 22 11111122 333333 3367777
Q ss_pred HHHHHHHHHhcCCCC
Q 037477 148 FWVTLRRMKEDHCYI 162 (639)
Q Consensus 148 a~~l~~~m~~~g~~~ 162 (639)
|+.+++.+...|..|
T Consensus 277 Al~~l~~l~~~G~~p 291 (598)
T PRK09111 277 ALAEFRAQYDAGADP 291 (598)
T ss_pred HHHHHHHHHHcCCCH
Confidence 777777777776544
No 481
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=24.38 E-value=3.4e+02 Score=28.68 Aligned_cols=78 Identities=10% Similarity=0.089 Sum_probs=51.6
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHH--------------hccCChHH
Q 037477 82 LENKLEELSPKLTHESVVYVLRKLDNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNL--------------VNKDSLKQ 147 (639)
Q Consensus 82 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~--------------~~~~~~~~ 147 (639)
++..+.+-+...+.+.+.-+.+...|...+|+.+++.+.. .+ .+..++..+...+ .-.++..+
T Consensus 187 L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~-~~--~~~It~~~v~~~lG~~~~~~~~~~~~~i~~~d~~~ 263 (515)
T COG2812 187 LAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIA-FG--EGEITLESVRDMLGLTDIEKLLSLLEAILKGDAKE 263 (515)
T ss_pred HHHHHHhcCCccCHHHHHHHHHHcCCChhhHHHHHHHHHH-cc--CCcccHHHHHHHhCCCCHHHHHHHHHHHHccCHHH
Confidence 4455555567778888877777778999999999999987 33 1333333333222 22467777
Q ss_pred HHHHHHHHHhcCCCC
Q 037477 148 FWVTLRRMKEDHCYI 162 (639)
Q Consensus 148 a~~l~~~m~~~g~~~ 162 (639)
++..++++.+.|..|
T Consensus 264 ~~~~~~~l~~~G~~~ 278 (515)
T COG2812 264 ALRLINELIEEGKDP 278 (515)
T ss_pred HHHHHHHHHHhCcCH
Confidence 777777777777544
No 482
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=24.37 E-value=6.8e+02 Score=24.54 Aligned_cols=93 Identities=9% Similarity=0.022 Sum_probs=47.3
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHh---CCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhCCCCCC----hHhH
Q 037477 481 LDVLINGFLSQKRVNGAYKLLVEMIEK---VRLRPWQATFKTLIEKL-LGARRLEEAMNLLRLMKKQNYPPF----PEPF 552 (639)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~~~~p~----~~~~ 552 (639)
+-....-||+.|+.+.|.+.+....++ .|.+.|+..+..-+..+ ....-..+-++..+.+.+.|..-+ ..+|
T Consensus 107 ~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY 186 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVY 186 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHH
Confidence 344455677777777777777655443 24455544443333222 222224445555555555554322 2355
Q ss_pred HHHHh-hcCCHHHHHHHHHHhh
Q 037477 553 VQYIS-KFGTVEDASEFLKALS 573 (639)
Q Consensus 553 ~~ll~-~~g~~~~a~~~~~~~~ 573 (639)
..+++ .-.++.+|-.+|-...
T Consensus 187 ~Gly~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 187 QGLYCMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHHHHHhHHHHHHHHHHHc
Confidence 55554 3456666666554433
No 483
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=24.12 E-value=1.1e+03 Score=26.97 Aligned_cols=71 Identities=14% Similarity=0.069 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 037477 459 VDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARR 529 (639)
Q Consensus 459 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 529 (639)
.+.-.+.|.++.+---.-|..++..-..-+...|++..|++++.++.+..+-.++...|-.++..+...|-
T Consensus 1212 ld~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw 1282 (1304)
T KOG1114|consen 1212 LDSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGW 1282 (1304)
T ss_pred hhhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCc
Confidence 34444555555542112244444444555566777778888888777766666766666666666655553
No 484
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=24.09 E-value=3.6e+02 Score=21.23 Aligned_cols=20 Identities=10% Similarity=0.140 Sum_probs=9.3
Q ss_pred HHHHHhcCCHHHHHHHHHHh
Q 037477 308 SRQFQKFRMMEDAVKLFEFM 327 (639)
Q Consensus 308 i~~~~~~g~~~~a~~l~~~m 327 (639)
+..|...|+.++|..-+.++
T Consensus 9 l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHhcCCCHHHHHHHHHHh
Confidence 33444445555555555444
No 485
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.96 E-value=1.1e+03 Score=27.69 Aligned_cols=57 Identities=14% Similarity=0.116 Sum_probs=29.5
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 037477 481 LDVLINGFLSQKRVNGAYKLLVEMIEKVRL-RPW-QATFKTLIEKLLGARRLEEAMNLL 537 (639)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~ 537 (639)
|..+++.+-..+..+.+.++-....+.-+. .|. ..+++++.+-....|.+-+|...+
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai 1044 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI 1044 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH
Confidence 455555666666666666555554443111 111 334555556666666666655543
No 486
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=23.85 E-value=1.8e+02 Score=23.23 Aligned_cols=47 Identities=19% Similarity=0.157 Sum_probs=34.1
Q ss_pred HHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchh
Q 037477 135 MLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKAS 181 (639)
Q Consensus 135 li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~ 181 (639)
++..+...+..-.|.++++.+.+.+..++..|.--.|..+...|...
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 45555555666678888888888877677777777788888877544
No 487
>PRK09462 fur ferric uptake regulator; Provisional
Probab=23.82 E-value=4.3e+02 Score=22.28 Aligned_cols=34 Identities=12% Similarity=0.035 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 037477 424 FEDACNVLDEMEENGCIPDIKTWTILIQGHCAAN 457 (639)
Q Consensus 424 ~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g 457 (639)
.-.|.++++.+.+.+...+..|.-..+..+...|
T Consensus 33 h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 4445555555554444334444333334444433
No 488
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=23.63 E-value=6.7e+02 Score=26.62 Aligned_cols=36 Identities=17% Similarity=0.232 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCH
Q 037477 300 DIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSV 336 (639)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~ 336 (639)
+....-.++.+.. .|+.++|+.+++++...|..|..
T Consensus 257 ~~~~if~L~~ai~-~~d~~~Al~~l~~L~~~g~~~~~ 292 (507)
T PRK06645 257 DSSVIIEFVEYII-HRETEKAINLINKLYGSSVNLEI 292 (507)
T ss_pred CHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHHH
Confidence 3334444555443 47888888888888888776654
No 489
>PRK10941 hypothetical protein; Provisional
Probab=23.62 E-value=6.5e+02 Score=24.01 Aligned_cols=56 Identities=11% Similarity=-0.129 Sum_probs=22.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 037477 414 VIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMM 470 (639)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 470 (639)
+-.+|.+.++++.|+.+.+.+..-... +..-+.--.-.|.+.|.+..|..=++..+
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl 242 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFV 242 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 333444444444444444444443211 22223333333444444444444444443
No 490
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=23.61 E-value=3e+02 Score=21.68 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=15.2
Q ss_pred HHHHHHHccCChhHHHHHHHHHH
Q 037477 378 GIHRALTKLGRFDEAEKMMKAMK 400 (639)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~ 400 (639)
.++.-|...|+.++|..-+.++.
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHhcCCCHHHHHHHHHHhC
Confidence 35556677788888887777753
No 491
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=23.27 E-value=5.9e+02 Score=23.39 Aligned_cols=160 Identities=19% Similarity=0.176 Sum_probs=86.0
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHH
Q 037477 373 KSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGC-IPDIKTWTILIQ 451 (639)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~t~~~li~ 451 (639)
+.+||-+---+...|+++.|.+.|+...+....-+-...|.-|. +--.|++.-|.+-|...-+... .|-...|--++.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 34677777778888999999999998887642222222222222 2246888888876666655432 232333433332
Q ss_pred HHHHcCCHHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC-------HHHHHHHHHH
Q 037477 452 GHCAANEVDRALLC-FAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW-------QATFKTLIEK 523 (639)
Q Consensus 452 ~~~~~g~~~~a~~~-~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-------~~~~~~li~~ 523 (639)
..-++.+|..- .++... .|..-|...|-.|-- |++. ...+|+.+... -.-+ ..||--+..-
T Consensus 178 ---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~--a~~n~~~Ae~LTEtyFYL~K~ 246 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKIS-EETLMERLKAD--ATDNTSLAEHLTETYFYLGKY 246 (297)
T ss_pred ---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHH
Confidence 23345555433 333332 244444443333221 2211 12233333321 1111 4577777888
Q ss_pred HHhcCCHHHHHHHHHHHHhCC
Q 037477 524 LLGARRLEEAMNLLRLMKKQN 544 (639)
Q Consensus 524 ~~~~g~~~~A~~~~~~m~~~~ 544 (639)
+...|+.++|..+|+......
T Consensus 247 ~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 247 YLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HhccccHHHHHHHHHHHHHHh
Confidence 888888999988888776543
No 492
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.19 E-value=9.3e+02 Score=26.35 Aligned_cols=79 Identities=10% Similarity=0.029 Sum_probs=49.6
Q ss_pred HHHHhhhCCCCCHHHHHHHHHhcCCChHHHHHHHHHHhhcCCCC------------CChHHHHHHHHHHhccCChHHHHH
Q 037477 83 ENKLEELSPKLTHESVVYVLRKLDNDPEKASAFFNWVCDKKQFR------------PSSTVYSLMLRNLVNKDSLKQFWV 150 (639)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~------------~~~~~~~~li~~~~~~~~~~~a~~ 150 (639)
...++..+...++..+...+....|++..|+..++.+..-.|-. .+...+-.++++.. .++..+|+.
T Consensus 190 ~~ia~~egi~i~~~al~~La~~s~gdlr~al~~Lekl~~y~~~~It~~~V~~~l~~~~~~~iF~L~dai~-~~~~~~al~ 268 (614)
T PRK14971 190 QYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTGGNITYKSVIENLNILDYDYYFRLTDALL-AGKVSDSLL 268 (614)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCccHHHHHHHhCCCCHHHHHHHHHHHH-cCCHHHHHH
Confidence 33344556777888777777777889999998887754311111 11222333444443 357888888
Q ss_pred HHHHHHhcCCCC
Q 037477 151 TLRRMKEDHCYI 162 (639)
Q Consensus 151 l~~~m~~~g~~~ 162 (639)
+++++...|..|
T Consensus 269 ll~~Ll~~g~~~ 280 (614)
T PRK14971 269 LFDEILNKGFDG 280 (614)
T ss_pred HHHHHHHcCCCH
Confidence 888888877654
No 493
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=21.88 E-value=1.8e+02 Score=23.40 Aligned_cols=47 Identities=13% Similarity=0.212 Sum_probs=31.3
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 037477 270 NGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRM 316 (639)
Q Consensus 270 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 316 (639)
..++..+...+..-.|.++++.|.+.+...+..|.-..+..+.+.|-
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 35666666666677888888888888777777765555566666553
No 494
>PRK09462 fur ferric uptake regulator; Provisional
Probab=21.78 E-value=4.9e+02 Score=21.94 Aligned_cols=57 Identities=19% Similarity=0.218 Sum_probs=34.7
Q ss_pred cCCCCCCHHHHHHHHHHHHcC-CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 037477 259 HSGYKHNTITYNGILRVLARH-ESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRM 316 (639)
Q Consensus 259 ~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 316 (639)
..|++++.. -..++..+... +..-.|.++++.+.+.+...+..|.--.+..+...|-
T Consensus 10 ~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 10 KAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred HcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 345554433 23445555543 4577888888888887766676665555566666553
No 495
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=21.78 E-value=5.9e+02 Score=22.83 Aligned_cols=78 Identities=13% Similarity=0.128 Sum_probs=46.7
Q ss_pred ccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHC--CCCCCHHHHHHHHH-HHHhcCC--H
Q 037477 243 RIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKE--GYEMDIDTYIKISR-QFQKFRM--M 317 (639)
Q Consensus 243 ~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~-~~~~~g~--~ 317 (639)
...-++++++-+.+. -+....-.....|++++|.+-++++.+. .++--...|..+.. +++..+. +
T Consensus 16 d~~REE~l~lsRei~----------r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEy 85 (204)
T COG2178 16 DKAREEALKLSREIV----------RLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEY 85 (204)
T ss_pred HHHHHHHHHHHHHHH----------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHH
Confidence 334456777766664 3444555567788899998888877553 11212344555555 5555553 5
Q ss_pred HHHHHHHHHhhcC
Q 037477 318 EDAVKLFEFMMDG 330 (639)
Q Consensus 318 ~~a~~l~~~m~~~ 330 (639)
.+|.-++......
T Consensus 86 vEA~~l~~~l~~~ 98 (204)
T COG2178 86 VEATLLYSILKDG 98 (204)
T ss_pred HHHHHHHHHHhcC
Confidence 6777777666554
No 496
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.72 E-value=9.8e+02 Score=25.41 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=23.0
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHC
Q 037477 362 NKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNA 402 (639)
Q Consensus 362 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 402 (639)
..+.+.|...+......++.. ..|++..|..++++....
T Consensus 189 ~il~~egi~~~~~al~~ia~~--s~GslR~al~lLdq~ia~ 227 (509)
T PRK14958 189 HLLKEENVEFENAALDLLARA--ANGSVRDALSLLDQSIAY 227 (509)
T ss_pred HHHHHcCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHhc
Confidence 344455666665555555443 247777777777765543
No 497
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=21.53 E-value=1.1e+03 Score=25.80 Aligned_cols=188 Identities=14% Similarity=0.081 Sum_probs=93.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCC-CCC-----HHHHHHHHHH--HHHcCCHHHHHHHHH--------HHHHcCCCCCHHHHH
Q 037477 419 CKAGRFEDACNVLDEMEENGC-IPD-----IKTWTILIQG--HCAANEVDRALLCFA--------KMMEKNYDADADLLD 482 (639)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~~~-~p~-----~~t~~~li~~--~~~~g~~~~a~~~~~--------~m~~~g~~~~~~~~~ 482 (639)
+-.|++..|...+..|.+..- .|+ ...+...+.| +-..|+.+.|+..|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 457889999999999875421 111 2233333333 345799999999997 444455554544443
Q ss_pred HH--HHHHHc--CCChhH--HHHHHHHHHHhCCCCC--CHHHHHHHH-HHHHhcCC--HHHHHHHHHHHHh-C-CCCCCh
Q 037477 483 VL--INGFLS--QKRVNG--AYKLLVEMIEKVRLRP--WQATFKTLI-EKLLGARR--LEEAMNLLRLMKK-Q-NYPPFP 549 (639)
Q Consensus 483 ~l--i~~~~~--~g~~~~--A~~~~~~m~~~~~~~p--~~~~~~~li-~~~~~~g~--~~~A~~~~~~m~~-~-~~~p~~ 549 (639)
.| +-.+.. ....++ +..+++.+.....-.| +..++..++ .++..... ..++...+..-.+ . .-..+.
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 32 112222 222233 6777776654322233 233444443 33322111 2244443333222 1 111111
Q ss_pred Hh---HHHHHh---hcCCHHHHHHHHHHhhcC----CCCCHHHHH-----HHHHHHHhcCCHHHHHHHHhhC
Q 037477 550 EP---FVQYIS---KFGTVEDASEFLKALSVK----EYPSSAAYL-----QVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 550 ~~---~~~ll~---~~g~~~~a~~~~~~~~~~----~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~m 606 (639)
.. ...+++ -.|++++........... ..-....|. .+.+.|...|+.++|.....+.
T Consensus 532 ~l~~~~L~lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~ 603 (608)
T PF10345_consen 532 QLLAILLNLMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQL 603 (608)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 11 111221 247777765554442221 111444553 4455677889999998887663
No 498
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=21.52 E-value=4.2e+02 Score=21.09 Aligned_cols=30 Identities=10% Similarity=-0.048 Sum_probs=12.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037477 510 LRPWQATFKTLIEKLLGARRLEEAMNLLRLMK 541 (639)
Q Consensus 510 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 541 (639)
..||...|.++- -.+.|-.+++...+.++.
T Consensus 67 ~~pdL~p~~AL~--a~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 67 CYPDLEPWAALC--AWKLGLASALESRLTRLA 96 (116)
T ss_dssp --GGGHHHHHHH--HHHCT-HHHHHHHHHHHC
T ss_pred CCccHHHHHHHH--HHhhccHHHHHHHHHHHH
Confidence 344444444432 234444455555444444
No 499
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=21.35 E-value=8.9e+02 Score=24.75 Aligned_cols=60 Identities=23% Similarity=0.299 Sum_probs=44.7
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHC--C----C-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037477 376 YDGIHRALTKLGRFDEAEKMMKAMKNA--G----F-EPDNITYSQVIFGLCKAGRFEDACNVLDEME 435 (639)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~--g----~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 435 (639)
...+++..+-.||+..|+++++.+.-. + + ...+.++--+.-+|...+++.+|.++|....
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445788999999999999998876421 1 1 1123445567788899999999999998864
No 500
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=21.33 E-value=7.8e+02 Score=24.09 Aligned_cols=18 Identities=11% Similarity=0.182 Sum_probs=9.7
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 037477 454 CAANEVDRALLCFAKMME 471 (639)
Q Consensus 454 ~~~g~~~~a~~~~~~m~~ 471 (639)
.+.|+..+|.++++++.+
T Consensus 286 RklGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 286 RKLGRLREAVKIMRDLMK 303 (556)
T ss_pred HHhhhHHHHHHHHHHHhh
Confidence 345555555555555544
Done!