Query 037477
Match_columns 639
No_of_seqs 659 out of 3191
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 21:56:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037477.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037477hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 9.7E-36 3.3E-40 322.0 43.9 479 106-621 66-591 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.9E-32 6.4E-37 296.2 41.9 467 106-591 97-595 (597)
3 4g26_A Pentatricopeptide repea 100.0 2E-31 6.7E-36 276.2 23.7 216 283-527 7-223 (501)
4 4g26_A Pentatricopeptide repea 100.0 1.3E-30 4.3E-35 270.1 24.7 205 249-491 9-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 5.4E-22 1.8E-26 201.9 46.8 372 106-594 12-387 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 3E-22 1E-26 203.7 43.3 317 246-609 49-368 (388)
7 2gw1_A Mitochondrial precursor 99.9 7.3E-20 2.5E-24 193.5 35.1 259 351-615 202-484 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 3.7E-19 1.3E-23 184.7 35.5 307 263-616 23-365 (450)
9 2y4t_A DNAJ homolog subfamily 99.9 2.1E-18 7.2E-23 179.0 38.5 328 243-605 39-405 (450)
10 2gw1_A Mitochondrial precursor 99.8 9.1E-18 3.1E-22 177.3 37.2 430 106-586 19-489 (514)
11 3fp2_A TPR repeat-containing p 99.8 1.7E-17 5.7E-22 176.4 37.1 347 244-608 107-490 (537)
12 3ieg_A DNAJ homolog subfamily 99.8 9.2E-17 3.1E-21 160.8 35.8 307 265-616 2-342 (359)
13 3fp2_A TPR repeat-containing p 99.8 6.1E-16 2.1E-20 164.3 41.3 79 106-187 38-116 (537)
14 3spa_A Mtrpol, DNA-directed RN 99.8 1.3E-19 4.4E-24 192.3 6.7 151 372-528 126-286 (1134)
15 3spa_A Mtrpol, DNA-directed RN 99.8 1.4E-18 4.9E-23 184.3 13.8 137 405-547 124-264 (1134)
16 3ieg_A DNAJ homolog subfamily 99.8 7.1E-15 2.4E-19 147.0 40.0 317 243-593 16-353 (359)
17 1b89_A Protein (clathrin heavy 99.8 8.6E-17 2.9E-21 158.6 23.1 347 106-608 16-371 (449)
18 3hym_B Cell division cycle pro 99.8 1.1E-15 3.7E-20 151.1 31.5 290 262-595 18-320 (330)
19 3hym_B Cell division cycle pro 99.8 1.2E-15 4E-20 150.8 31.6 281 298-621 19-311 (330)
20 2ooe_A Cleavage stimulation fa 99.7 4.7E-13 1.6E-17 141.6 44.8 74 106-183 25-99 (530)
21 1fch_A Peroxisomal targeting s 99.7 2.7E-15 9.1E-20 150.9 23.9 223 378-606 103-356 (368)
22 2xm6_A Protein corresponding t 99.7 5.3E-12 1.8E-16 132.1 46.7 288 244-591 129-451 (490)
23 1fch_A Peroxisomal targeting s 99.7 1.8E-14 6E-19 144.9 26.5 284 244-570 39-354 (368)
24 1xi4_A Clathrin heavy chain; a 99.7 4.6E-11 1.6E-15 131.6 53.8 451 92-606 950-1442(1630)
25 1xi4_A Clathrin heavy chain; a 99.7 4E-11 1.4E-15 132.1 52.6 305 243-602 1062-1377(1630)
26 2ooe_A Cleavage stimulation fa 99.7 3.5E-12 1.2E-16 134.9 43.9 409 127-606 11-489 (530)
27 2xm6_A Protein corresponding t 99.7 7.1E-12 2.4E-16 131.1 45.6 340 243-610 56-433 (490)
28 1b89_A Protein (clathrin heavy 99.7 1.7E-16 5.9E-21 156.5 9.7 219 243-505 16-234 (449)
29 3mkr_A Coatomer subunit epsilo 99.7 3.1E-14 1.1E-18 137.5 24.9 269 243-567 12-286 (291)
30 3cv0_A Peroxisome targeting si 99.6 2.6E-13 8.9E-18 133.7 29.3 265 243-540 34-312 (327)
31 3mkr_A Coatomer subunit epsilo 99.6 1E-13 3.6E-18 133.7 25.7 158 375-542 67-228 (291)
32 4g1t_A Interferon-induced prot 99.6 1.1E-12 3.9E-17 136.6 35.5 211 387-609 227-459 (472)
33 4eqf_A PEX5-related protein; a 99.6 5.9E-14 2E-18 141.0 24.8 126 379-506 183-309 (365)
34 3cv0_A Peroxisome targeting si 99.6 9.6E-14 3.3E-18 136.8 25.8 262 301-607 21-313 (327)
35 4eqf_A PEX5-related protein; a 99.6 5.5E-14 1.9E-18 141.2 23.1 231 372-606 64-307 (365)
36 3uq3_A Heat shock protein STI1 99.5 5.4E-12 1.9E-16 119.4 25.6 229 266-542 5-235 (258)
37 3uq3_A Heat shock protein STI1 99.5 2.1E-12 7.3E-17 122.3 22.0 219 374-608 6-235 (258)
38 2pl2_A Hypothetical conserved 99.5 3.4E-12 1.2E-16 117.4 21.7 196 405-607 2-212 (217)
39 2pl2_A Hypothetical conserved 99.5 5E-12 1.7E-16 116.3 21.9 199 263-504 2-211 (217)
40 3u4t_A TPR repeat-containing p 99.5 2.1E-11 7.3E-16 116.5 25.9 247 268-555 5-260 (272)
41 1ouv_A Conserved hypothetical 99.5 5.5E-11 1.9E-15 113.8 28.6 223 372-609 5-251 (273)
42 2ho1_A Type 4 fimbrial biogene 99.5 2E-11 6.9E-16 115.2 24.9 199 374-608 38-237 (252)
43 2ho1_A Type 4 fimbrial biogene 99.4 4.1E-11 1.4E-15 113.1 26.3 201 266-507 37-238 (252)
44 2vq2_A PILW, putative fimbrial 99.4 5.5E-11 1.9E-15 109.8 26.6 203 265-507 7-211 (225)
45 1xnf_A Lipoprotein NLPI; TPR, 99.4 7.6E-12 2.6E-16 119.8 21.2 244 278-569 17-269 (275)
46 4g1t_A Interferon-induced prot 99.4 2E-10 6.8E-15 119.5 32.9 322 243-583 107-467 (472)
47 2vq2_A PILW, putative fimbrial 99.4 3.4E-11 1.2E-15 111.2 23.9 166 373-542 8-175 (225)
48 1xnf_A Lipoprotein NLPI; TPR, 99.4 2.7E-11 9.4E-16 115.8 22.8 216 386-606 18-241 (275)
49 1ouv_A Conserved hypothetical 99.4 5.1E-10 1.8E-14 107.0 31.1 224 265-544 5-252 (273)
50 2q7f_A YRRB protein; TPR, prot 99.4 1.8E-11 6.2E-16 114.7 19.7 207 372-585 22-232 (243)
51 2q7f_A YRRB protein; TPR, prot 99.4 2.3E-11 8E-16 113.9 20.5 213 405-623 20-236 (243)
52 3u4t_A TPR repeat-containing p 99.4 7.4E-11 2.5E-15 112.7 23.2 241 375-622 5-263 (272)
53 4e6h_A MRNA 3'-END-processing 99.4 5.6E-09 1.9E-13 111.3 38.5 204 372-579 342-574 (679)
54 2h6f_A Protein farnesyltransfe 99.4 2E-10 6.9E-15 114.6 25.7 231 265-540 96-344 (382)
55 2h6f_A Protein farnesyltransfe 99.3 2.5E-10 8.5E-15 113.9 24.0 225 374-606 98-344 (382)
56 3e4b_A ALGK; tetratricopeptide 99.3 6.8E-11 2.3E-15 121.8 20.0 219 375-607 178-419 (452)
57 3nf1_A KLC 1, kinesin light ch 99.3 2.5E-11 8.5E-16 118.4 15.6 234 373-606 27-304 (311)
58 3sf4_A G-protein-signaling mod 99.3 7.6E-11 2.6E-15 119.8 19.3 301 263-597 6-364 (406)
59 4a1s_A PINS, partner of inscut 99.3 9.5E-11 3.3E-15 119.5 18.2 243 265-541 47-330 (411)
60 3vtx_A MAMA; tetratricopeptide 99.3 1.8E-09 6E-14 96.2 23.3 166 372-542 4-169 (184)
61 3nf1_A KLC 1, kinesin light ch 99.2 8.1E-11 2.8E-15 114.7 15.3 246 265-542 26-306 (311)
62 4a1s_A PINS, partner of inscut 99.2 2.8E-10 9.6E-15 116.0 19.9 273 300-606 47-369 (411)
63 3sf4_A G-protein-signaling mod 99.2 2.6E-10 8.7E-15 115.9 19.3 275 298-606 6-333 (406)
64 2ond_A Cleavage stimulation fa 99.2 9.5E-09 3.3E-13 100.0 29.7 219 283-543 33-270 (308)
65 3ro2_A PINS homolog, G-protein 99.2 5E-10 1.7E-14 110.2 19.9 279 268-606 7-329 (338)
66 2ond_A Cleavage stimulation fa 99.2 6.5E-09 2.2E-13 101.2 27.1 220 247-508 33-271 (308)
67 4abn_A Tetratricopeptide repea 99.2 7.2E-10 2.4E-14 114.9 21.1 210 389-606 84-318 (474)
68 3ro2_A PINS homolog, G-protein 99.2 4.5E-10 1.5E-14 110.6 18.8 267 243-542 18-331 (338)
69 4abn_A Tetratricopeptide repea 99.2 7.5E-10 2.6E-14 114.7 20.4 215 245-503 83-317 (474)
70 3ulq_A Response regulator aspa 99.2 5E-10 1.7E-14 113.0 18.1 227 379-606 109-365 (383)
71 3vtx_A MAMA; tetratricopeptide 99.2 4.6E-09 1.6E-13 93.5 21.9 160 442-606 4-167 (184)
72 3e4b_A ALGK; tetratricopeptide 99.2 7.7E-10 2.6E-14 113.9 18.9 339 242-607 15-385 (452)
73 4e6h_A MRNA 3'-END-processing 99.2 3.8E-07 1.3E-11 97.3 39.4 442 110-623 49-584 (679)
74 3as5_A MAMA; tetratricopeptide 99.1 7.3E-09 2.5E-13 91.9 20.9 163 375-542 10-172 (186)
75 3edt_B KLC 2, kinesin light ch 99.1 7.8E-10 2.7E-14 105.9 13.9 223 384-606 12-278 (283)
76 3q15_A PSP28, response regulat 99.1 6E-09 2.1E-13 104.8 20.8 227 379-606 107-362 (378)
77 3as5_A MAMA; tetratricopeptide 99.1 2.5E-08 8.4E-13 88.5 22.3 166 301-507 8-173 (186)
78 4i17_A Hypothetical protein; T 99.1 5.6E-08 1.9E-12 89.8 24.6 207 372-589 6-223 (228)
79 3ulq_A Response regulator aspa 99.1 1.2E-08 4E-13 102.8 21.5 232 307-574 109-367 (383)
80 1hz4_A MALT regulatory protein 99.0 7.2E-08 2.5E-12 96.6 25.9 299 268-606 16-346 (373)
81 4gyw_A UDP-N-acetylglucosamine 99.0 1.9E-08 6.4E-13 108.6 21.4 164 373-542 9-173 (723)
82 1hz4_A MALT regulatory protein 99.0 2.2E-07 7.4E-12 93.1 27.4 302 237-577 21-351 (373)
83 3edt_B KLC 2, kinesin light ch 99.0 2.7E-08 9.2E-13 95.0 19.8 236 277-542 12-280 (283)
84 4i17_A Hypothetical protein; T 99.0 3.9E-08 1.3E-12 90.8 19.4 211 405-621 4-221 (228)
85 3q15_A PSP28, response regulat 99.0 5.4E-07 1.8E-11 90.4 28.6 231 238-505 109-363 (378)
86 4gyw_A UDP-N-acetylglucosamine 98.9 4.2E-08 1.4E-12 105.9 21.1 166 300-506 8-173 (723)
87 3mv2_B Coatomer subunit epsilo 98.9 1.9E-07 6.5E-12 88.3 21.5 247 309-582 21-289 (310)
88 2fo7_A Synthetic consensus TPR 98.9 1.2E-07 4.2E-12 78.7 17.8 128 411-542 4-131 (136)
89 2fo7_A Synthetic consensus TPR 98.9 2.3E-07 7.8E-12 77.0 19.1 130 375-507 3-132 (136)
90 3mv2_B Coatomer subunit epsilo 98.9 8.4E-07 2.9E-11 83.9 24.1 254 274-555 21-292 (310)
91 1qqe_A Vesicular transport pro 98.8 2.8E-07 9.7E-12 88.7 20.9 205 388-607 32-267 (292)
92 3qky_A Outer membrane assembly 98.8 7.8E-08 2.7E-12 90.9 15.0 190 405-597 12-249 (261)
93 1qqe_A Vesicular transport pro 98.8 2.2E-07 7.6E-12 89.4 18.2 205 376-582 40-276 (292)
94 2yhc_A BAMD, UPF0169 lipoprote 98.7 9.7E-07 3.3E-11 81.2 20.1 185 408-609 4-213 (225)
95 3qky_A Outer membrane assembly 98.7 7.1E-07 2.4E-11 84.2 19.4 175 372-550 14-229 (261)
96 3urz_A Uncharacterized protein 98.6 1.3E-06 4.3E-11 79.3 17.6 107 379-489 10-133 (208)
97 2r5s_A Uncharacterized protein 98.6 4.3E-07 1.5E-11 79.9 12.7 162 376-541 9-171 (176)
98 3qou_A Protein YBBN; thioredox 98.6 1E-06 3.5E-11 84.5 16.3 165 373-541 117-282 (287)
99 2pzi_A Probable serine/threoni 98.6 7.5E-07 2.6E-11 96.5 17.0 153 384-542 402-562 (681)
100 2yhc_A BAMD, UPF0169 lipoprote 98.6 4.7E-06 1.6E-10 76.5 20.1 167 375-543 6-213 (225)
101 3rjv_A Putative SEL1 repeat pr 98.6 5.1E-06 1.8E-10 75.4 19.0 140 391-543 4-158 (212)
102 2vsy_A XCC0866; transferase, g 98.5 3.6E-06 1.2E-10 89.4 19.8 132 373-507 23-157 (568)
103 4ga2_A E3 SUMO-protein ligase 98.5 9E-07 3.1E-11 75.4 11.9 143 381-529 5-149 (150)
104 3urz_A Uncharacterized protein 98.5 7.2E-06 2.5E-10 74.2 18.5 188 303-519 6-195 (208)
105 2pzi_A Probable serine/threoni 98.5 3.2E-06 1.1E-10 91.6 18.8 170 352-528 405-582 (681)
106 2ifu_A Gamma-SNAP; membrane fu 98.5 5.1E-06 1.7E-10 80.5 17.8 209 414-626 42-277 (307)
107 2ifu_A Gamma-SNAP; membrane fu 98.5 8.3E-06 2.8E-10 78.9 19.2 202 244-505 5-222 (307)
108 3rjv_A Putative SEL1 repeat pr 98.5 1.7E-05 5.9E-10 71.9 20.1 163 372-544 17-198 (212)
109 3dra_A Protein farnesyltransfe 98.5 0.00011 3.6E-09 70.2 26.0 217 385-608 45-286 (306)
110 3dra_A Protein farnesyltransfe 98.5 0.00018 6.3E-09 68.5 27.5 232 276-542 43-286 (306)
111 3qou_A Protein YBBN; thioredox 98.5 2.4E-06 8.2E-11 81.8 14.4 133 405-542 114-247 (287)
112 1a17_A Serine/threonine protei 98.4 8.2E-06 2.8E-10 70.5 16.6 128 410-541 15-144 (166)
113 2r5s_A Uncharacterized protein 98.4 4.1E-06 1.4E-10 73.5 14.7 164 268-471 8-172 (176)
114 2vsy_A XCC0866; transferase, g 98.4 5.7E-06 2E-10 87.9 18.6 93 378-472 62-157 (568)
115 3u3w_A Transcriptional activat 98.4 5.1E-05 1.7E-09 72.8 23.4 165 378-542 80-265 (293)
116 3u3w_A Transcriptional activat 98.4 0.00012 4E-09 70.2 25.9 205 261-506 41-265 (293)
117 2uy1_A Cleavage stimulation fa 98.4 0.00048 1.6E-08 71.1 32.0 373 107-542 28-412 (493)
118 1hh8_A P67PHOX, NCF-2, neutrop 98.4 1.9E-05 6.3E-10 71.6 19.1 124 414-542 12-149 (213)
119 2uy1_A Cleavage stimulation fa 98.4 0.00015 5.1E-09 74.9 27.7 340 244-606 28-410 (493)
120 2c2l_A CHIP, carboxy terminus 98.4 1.9E-06 6.3E-11 82.3 11.9 193 407-608 3-198 (281)
121 4ga2_A E3 SUMO-protein ligase 98.4 2.6E-06 8.8E-11 72.6 11.4 116 375-493 33-149 (150)
122 1na0_A Designed protein CTPR3; 98.4 1.9E-05 6.7E-10 64.0 15.8 95 376-472 12-106 (125)
123 1a17_A Serine/threonine protei 98.3 1.9E-05 6.4E-10 68.1 16.5 129 375-506 15-145 (166)
124 1hh8_A P67PHOX, NCF-2, neutrop 98.3 2.8E-05 9.6E-10 70.4 18.0 127 376-507 9-150 (213)
125 3gyz_A Chaperone protein IPGC; 98.3 1.2E-05 4.1E-10 68.1 13.8 98 408-507 36-133 (151)
126 3gw4_A Uncharacterized protein 98.3 9.3E-06 3.2E-10 72.9 14.0 158 384-542 3-175 (203)
127 2qfc_A PLCR protein; TPR, HTH, 98.3 5.2E-05 1.8E-09 72.7 19.9 165 376-541 78-264 (293)
128 1na0_A Designed protein CTPR3; 98.3 5.8E-05 2E-09 61.1 16.9 98 408-507 9-106 (125)
129 2e2e_A Formate-dependent nitri 98.3 1.5E-05 5.1E-10 69.9 14.0 121 384-507 21-144 (177)
130 2vyi_A SGTA protein; chaperone 98.3 3E-05 1E-09 63.5 15.0 114 376-492 15-128 (131)
131 2vgx_A Chaperone SYCD; alterna 98.3 8.7E-06 3E-10 69.0 11.9 98 408-507 21-118 (148)
132 2qfc_A PLCR protein; TPR, HTH, 98.2 0.00019 6.4E-09 68.8 22.6 173 266-470 75-264 (293)
133 4gco_A Protein STI-1; structur 98.2 4.5E-05 1.5E-09 62.4 15.2 94 411-506 16-109 (126)
134 4gco_A Protein STI-1; structur 98.2 5.5E-05 1.9E-09 61.9 15.5 96 375-472 15-110 (126)
135 2lni_A Stress-induced-phosphop 98.2 2.8E-05 9.6E-10 64.0 13.8 97 374-472 17-113 (133)
136 3gyz_A Chaperone protein IPGC; 98.2 9E-05 3.1E-09 62.7 16.8 104 442-550 35-138 (151)
137 2lni_A Stress-induced-phosphop 98.2 4.5E-05 1.5E-09 62.7 14.3 119 406-528 14-132 (133)
138 2vyi_A SGTA protein; chaperone 98.1 8.5E-05 2.9E-09 60.7 15.2 119 407-529 11-129 (131)
139 3q7a_A Farnesyltransferase alp 98.1 0.00095 3.3E-08 64.4 24.1 221 382-609 63-331 (349)
140 3q7a_A Farnesyltransferase alp 98.1 0.0012 4.1E-08 63.7 24.2 225 275-541 63-329 (349)
141 3sz7_A HSC70 cochaperone (SGT) 98.1 8.4E-05 2.9E-09 64.1 15.0 104 408-513 11-114 (164)
142 4f3v_A ESX-1 secretion system 98.1 0.00012 4E-09 68.3 16.6 206 278-507 18-237 (282)
143 4f3v_A ESX-1 secretion system 98.1 0.00014 4.8E-09 67.8 17.1 195 385-587 18-248 (282)
144 3gw4_A Uncharacterized protein 98.1 4.2E-05 1.4E-09 68.5 13.5 161 277-471 3-175 (203)
145 1p5q_A FKBP52, FK506-binding p 98.1 6.6E-05 2.3E-09 73.5 15.8 87 444-533 197-283 (336)
146 2e2e_A Formate-dependent nitri 98.1 6.2E-05 2.1E-09 65.8 14.0 121 419-543 21-144 (177)
147 1p5q_A FKBP52, FK506-binding p 98.1 0.00015 5.3E-09 70.9 17.7 132 373-506 147-293 (336)
148 1elw_A TPR1-domain of HOP; HOP 98.0 0.00023 8E-09 56.7 15.5 93 411-505 7-99 (118)
149 2c2l_A CHIP, carboxy terminus 98.0 0.00031 1.1E-08 66.7 18.8 187 373-575 4-199 (281)
150 3upv_A Heat shock protein STI1 98.0 0.00022 7.6E-09 58.1 15.3 95 410-506 6-100 (126)
151 2xcb_A PCRH, regulatory protei 98.0 0.00013 4.4E-09 61.1 13.9 95 411-507 21-115 (142)
152 2vgx_A Chaperone SYCD; alterna 98.0 3.9E-05 1.3E-09 64.9 10.6 98 442-542 20-117 (148)
153 4gcn_A Protein STI-1; structur 98.0 0.00024 8.3E-09 58.1 14.5 96 410-506 10-111 (127)
154 3upv_A Heat shock protein STI1 98.0 0.00024 8.4E-09 57.8 14.5 97 374-472 5-101 (126)
155 2kck_A TPR repeat; tetratricop 98.0 0.00013 4.4E-09 57.7 12.5 94 411-506 9-105 (112)
156 2fbn_A 70 kDa peptidylprolyl i 97.9 2.7E-05 9.2E-10 69.7 9.2 155 383-541 14-184 (198)
157 4b4t_Q 26S proteasome regulato 97.9 0.0015 5E-08 66.4 23.4 199 275-506 13-244 (434)
158 1elw_A TPR1-domain of HOP; HOP 97.9 0.00058 2E-08 54.3 16.1 96 375-472 6-101 (118)
159 4gcn_A Protein STI-1; structur 97.9 0.00026 8.7E-09 57.9 14.0 106 443-551 8-118 (127)
160 1elr_A TPR2A-domain of HOP; HO 97.9 0.00016 5.5E-09 59.0 12.6 97 410-507 6-108 (131)
161 3q49_B STIP1 homology and U bo 97.9 0.00035 1.2E-08 57.7 14.7 97 407-505 8-104 (137)
162 2dba_A Smooth muscle cell asso 97.9 0.00055 1.9E-08 57.3 16.0 97 373-472 28-128 (148)
163 2xcb_A PCRH, regulatory protei 97.9 0.00018 6E-09 60.3 12.7 96 375-472 20-115 (142)
164 4b4t_Q 26S proteasome regulato 97.9 0.00077 2.6E-08 68.5 20.0 194 381-574 12-244 (434)
165 3q49_B STIP1 homology and U bo 97.9 0.0003 1E-08 58.1 14.1 100 371-472 7-106 (137)
166 3sz7_A HSC70 cochaperone (SGT) 97.9 0.00032 1.1E-08 60.3 14.4 99 373-473 11-109 (164)
167 1elr_A TPR2A-domain of HOP; HO 97.9 0.00015 5.2E-09 59.1 11.8 111 374-487 5-121 (131)
168 2kck_A TPR repeat; tetratricop 97.9 0.00022 7.6E-09 56.2 12.4 100 373-473 6-107 (112)
169 3dss_A Geranylgeranyl transfer 97.8 0.011 3.6E-07 56.8 25.3 195 389-590 90-319 (331)
170 3ro3_A PINS homolog, G-protein 97.8 0.00019 6.6E-09 61.1 12.0 132 411-542 12-157 (164)
171 2fbn_A 70 kDa peptidylprolyl i 97.8 0.00038 1.3E-08 62.0 14.2 130 375-506 40-185 (198)
172 2dba_A Smooth muscle cell asso 97.8 0.0012 4E-08 55.2 16.2 99 406-507 26-128 (148)
173 3dss_A Geranylgeranyl transfer 97.7 0.032 1.1E-06 53.4 27.2 224 277-548 40-307 (331)
174 3ro3_A PINS homolog, G-protein 97.7 0.00017 5.9E-09 61.4 10.5 133 375-507 11-158 (164)
175 3k9i_A BH0479 protein; putativ 97.7 6.8E-05 2.3E-09 60.4 7.2 84 387-471 4-89 (117)
176 1hxi_A PEX5, peroxisome target 97.7 0.00033 1.1E-08 56.7 11.3 92 378-471 22-113 (121)
177 1hxi_A PEX5, peroxisome target 97.7 0.00042 1.4E-08 56.0 11.3 94 411-506 20-113 (121)
178 1wao_1 Serine/threonine protei 97.6 0.00024 8.1E-09 73.2 11.1 122 379-503 12-135 (477)
179 2xev_A YBGF; tetratricopeptide 97.6 0.0025 8.7E-08 51.7 15.2 92 379-472 8-105 (129)
180 1wao_1 Serine/threonine protei 97.6 0.00025 8.4E-09 73.1 10.7 114 352-468 20-135 (477)
181 3k9i_A BH0479 protein; putativ 97.6 0.00021 7.1E-09 57.4 8.1 106 420-526 2-109 (117)
182 2xev_A YBGF; tetratricopeptide 97.6 0.0024 8.3E-08 51.8 14.6 93 413-507 7-105 (129)
183 1ihg_A Cyclophilin 40; ppiase 97.4 0.0014 4.7E-08 64.9 13.5 136 376-535 226-362 (370)
184 1kt0_A FKBP51, 51 kDa FK506-bi 97.4 0.0025 8.5E-08 65.2 15.8 129 408-540 268-412 (457)
185 3rkv_A Putative peptidylprolyl 97.4 0.0024 8.4E-08 54.5 13.5 63 444-507 64-126 (162)
186 1kt0_A FKBP51, 51 kDa FK506-bi 97.4 0.0017 6E-08 66.3 13.9 129 375-505 270-413 (457)
187 3rkv_A Putative peptidylprolyl 97.3 0.0029 9.9E-08 54.0 12.6 98 375-473 13-127 (162)
188 1ihg_A Cyclophilin 40; ppiase 97.3 0.0028 9.7E-08 62.6 14.0 132 410-566 225-361 (370)
189 3n71_A Histone lysine methyltr 97.3 0.0015 5E-08 66.9 11.6 132 275-436 318-463 (490)
190 2kat_A Uncharacterized protein 97.2 0.0018 6E-08 51.6 9.4 77 392-470 4-80 (115)
191 2if4_A ATFKBP42; FKBP-like, al 97.2 0.0012 4.1E-08 64.5 9.8 144 376-542 182-327 (338)
192 3n71_A Histone lysine methyltr 97.2 0.0015 5.2E-08 66.8 10.8 125 382-506 318-463 (490)
193 2hr2_A Hypothetical protein; a 97.2 0.012 4.2E-07 49.2 14.2 93 377-471 15-130 (159)
194 2hr2_A Hypothetical protein; a 97.2 0.0071 2.4E-07 50.7 12.8 95 410-504 13-128 (159)
195 1klx_A Cysteine rich protein B 97.2 0.011 3.7E-07 48.8 14.1 109 388-507 10-126 (138)
196 2l6j_A TPR repeat-containing p 97.1 0.00063 2.2E-08 53.6 5.8 91 516-608 6-106 (111)
197 1klx_A Cysteine rich protein B 97.1 0.021 7.2E-07 47.1 14.7 112 422-545 9-128 (138)
198 2if4_A ATFKBP42; FKBP-like, al 97.0 0.0022 7.5E-08 62.6 9.5 142 443-606 179-325 (338)
199 2kat_A Uncharacterized protein 97.0 0.0066 2.3E-07 48.1 10.6 80 426-507 3-82 (115)
200 2l6j_A TPR repeat-containing p 96.9 0.0015 5.2E-08 51.3 6.3 62 410-472 6-67 (111)
201 1na3_A Designed protein CTPR2; 96.9 0.011 3.7E-07 44.2 10.8 60 376-436 12-71 (91)
202 1dce_A Protein (RAB geranylger 96.8 0.062 2.1E-06 56.2 19.5 175 280-496 43-244 (567)
203 1dce_A Protein (RAB geranylger 96.8 0.043 1.5E-06 57.4 18.2 135 459-598 89-244 (567)
204 1na3_A Designed protein CTPR2; 96.8 0.014 4.9E-07 43.4 11.0 63 409-472 10-72 (91)
205 3ma5_A Tetratricopeptide repea 96.8 0.0069 2.3E-07 46.7 8.8 62 408-470 7-68 (100)
206 3ma5_A Tetratricopeptide repea 96.5 0.012 4E-07 45.3 8.6 63 372-435 6-68 (100)
207 1zu2_A Mitochondrial import re 96.5 0.0096 3.3E-07 49.8 8.3 87 384-472 13-120 (158)
208 1zu2_A Mitochondrial import re 96.5 0.0099 3.4E-07 49.7 8.3 98 419-521 13-131 (158)
209 3mkq_A Coatomer beta'-subunit; 96.3 0.062 2.1E-06 59.4 16.0 45 385-435 664-708 (814)
210 3qww_A SET and MYND domain-con 95.8 0.031 1.1E-06 56.1 9.4 93 278-400 310-409 (433)
211 3qwp_A SET and MYND domain-con 95.7 0.056 1.9E-06 54.2 10.8 92 415-506 294-399 (429)
212 3ly7_A Transcriptional activat 95.6 0.45 1.5E-05 45.8 16.2 72 475-551 274-345 (372)
213 3qww_A SET and MYND domain-con 95.6 0.04 1.4E-06 55.3 9.4 63 479-541 341-409 (433)
214 3ly7_A Transcriptional activat 95.6 0.7 2.4E-05 44.5 17.4 61 513-575 276-339 (372)
215 3qwp_A SET and MYND domain-con 95.5 0.066 2.2E-06 53.8 10.8 100 271-400 292-398 (429)
216 2kc7_A BFR218_protein; tetratr 95.3 0.14 4.7E-06 38.7 9.7 55 417-472 9-64 (99)
217 3bee_A Putative YFRE protein; 95.2 0.059 2E-06 40.6 6.9 60 562-621 25-84 (93)
218 3mkq_A Coatomer beta'-subunit; 95.1 0.58 2E-05 51.5 18.0 151 384-571 610-761 (814)
219 3mkq_B Coatomer subunit alpha; 95.1 1.3 4.4E-05 37.5 16.8 103 274-434 13-115 (177)
220 3mkq_B Coatomer subunit alpha; 94.6 0.94 3.2E-05 38.4 13.4 99 384-503 16-114 (177)
221 1wy6_A Hypothetical protein ST 94.6 1.4 4.7E-05 35.1 14.9 139 385-546 19-157 (172)
222 2kc7_A BFR218_protein; tetratr 94.5 0.31 1E-05 36.7 9.9 58 449-507 6-64 (99)
223 3bee_A Putative YFRE protein; 94.2 0.81 2.8E-05 34.2 11.2 20 486-505 51-70 (93)
224 1wy6_A Hypothetical protein ST 94.0 1.9 6.4E-05 34.4 15.2 69 264-333 89-157 (172)
225 1pc2_A Mitochondria fission pr 93.6 0.43 1.5E-05 39.4 9.1 80 426-507 16-100 (152)
226 1pc2_A Mitochondria fission pr 92.9 0.84 2.9E-05 37.6 9.9 81 390-472 15-100 (152)
227 2v5f_A Prolyl 4-hydroxylase su 92.7 0.77 2.6E-05 35.2 9.2 63 444-506 6-74 (104)
228 4ady_A RPN2, 26S proteasome re 92.7 14 0.00047 40.5 29.2 26 269-294 233-258 (963)
229 4gns_B Protein CSD3, chitin bi 92.3 2.3 7.9E-05 45.4 14.9 53 556-608 347-399 (754)
230 3u64_A Protein TP_0956; tetrat 92.2 2 7E-05 39.6 12.5 63 444-506 200-268 (301)
231 2v5f_A Prolyl 4-hydroxylase su 91.7 2.3 8E-05 32.3 10.8 62 411-472 8-75 (104)
232 4h7y_A Dual specificity protei 91.4 2.1 7E-05 34.9 10.1 110 374-486 14-136 (161)
233 3lvg_A Clathrin heavy chain 1; 91.4 6.1E-06 2.1E-10 80.6 -25.9 328 128-606 53-391 (624)
234 3u64_A Protein TP_0956; tetrat 90.9 1.7 5.9E-05 40.1 10.6 94 389-484 179-283 (301)
235 3ffl_A Anaphase-promoting comp 90.2 2 6.8E-05 35.7 9.3 141 472-621 12-162 (167)
236 1nzn_A CGI-135 protein, fissio 89.7 2.2 7.6E-05 33.7 8.9 81 425-507 18-103 (126)
237 4fhn_B Nucleoporin NUP120; pro 89.7 7.3 0.00025 44.5 17.0 145 378-531 817-988 (1139)
238 2ff4_A Probable regulatory pro 88.3 8.1 0.00028 37.9 14.2 68 447-515 175-246 (388)
239 4b4t_P 26S proteasome regulato 87.1 26 0.00088 35.0 20.6 164 376-541 140-322 (445)
240 4gns_B Protein CSD3, chitin bi 86.4 2.6 9E-05 45.0 9.8 56 379-435 343-398 (754)
241 1nzn_A CGI-135 protein, fissio 86.3 5.1 0.00018 31.6 9.0 86 458-548 16-106 (126)
242 1v54_E Cytochrome C oxidase po 86.3 6.2 0.00021 29.5 8.7 63 458-522 25-87 (109)
243 4h7y_A Dual specificity protei 86.1 13 0.00043 30.4 12.3 63 387-451 74-136 (161)
244 2ff4_A Probable regulatory pro 85.2 3.3 0.00011 40.7 9.3 67 378-445 176-247 (388)
245 1v54_E Cytochrome C oxidase po 85.0 9.3 0.00032 28.6 9.1 62 353-415 25-86 (109)
246 2dhy_A CUE domain-containing p 83.3 7.1 0.00024 26.7 7.4 41 81-121 20-60 (67)
247 2wpv_A GET4, UPF0363 protein Y 82.6 32 0.0011 32.2 15.5 142 445-605 35-193 (312)
248 4b4t_P 26S proteasome regulato 82.3 42 0.0014 33.4 17.4 233 372-606 55-321 (445)
249 1wgl_A TOLL-interacting protei 82.1 3.7 0.00012 27.4 5.5 47 81-128 11-57 (59)
250 2y69_E Cytochrome C oxidase su 79.7 21 0.00073 28.3 9.9 63 458-522 68-130 (152)
251 4fhn_B Nucleoporin NUP120; pro 79.3 31 0.001 39.4 15.6 49 303-351 901-953 (1139)
252 2y69_E Cytochrome C oxidase su 77.5 25 0.00086 27.9 9.7 62 353-415 68-129 (152)
253 1zbp_A Hypothetical protein VP 74.8 44 0.0015 30.3 12.0 56 274-330 5-60 (273)
254 3lvg_A Clathrin heavy chain 1; 72.0 0.0053 1.8E-07 60.4 -14.9 76 514-592 199-275 (624)
255 3ffl_A Anaphase-promoting comp 71.2 44 0.0015 27.8 10.3 60 412-471 24-91 (167)
256 4b4t_R RPN7, 26S proteasome re 69.1 47 0.0016 32.9 12.3 96 410-507 133-237 (429)
257 2qx5_A Nucleoporin NIC96; mRNA 68.0 88 0.003 32.8 14.3 29 579-607 532-565 (661)
258 1otr_A Protein CUE2; protein-p 67.1 14 0.00048 23.4 5.0 39 83-121 8-46 (49)
259 1qsa_A Protein (soluble lytic 67.1 1.3E+02 0.0043 31.5 26.3 267 265-574 71-347 (618)
260 3o48_A Mitochondria fission 1 65.2 50 0.0017 26.2 9.3 19 487-505 87-105 (134)
261 3o48_A Mitochondria fission 1 64.1 53 0.0018 26.1 10.0 74 261-336 35-111 (134)
262 3eiq_C Programmed cell death p 62.7 1.1E+02 0.0037 29.2 13.9 26 268-293 56-81 (358)
263 3lpz_A GET4 (YOR164C homolog); 62.2 1.1E+02 0.0036 29.0 20.8 114 268-396 37-159 (336)
264 1zbp_A Hypothetical protein VP 62.1 26 0.00088 31.8 7.7 53 419-472 8-60 (273)
265 4b4t_R RPN7, 26S proteasome re 60.3 66 0.0022 31.8 11.4 98 445-542 133-236 (429)
266 2p58_C Putative type III secre 60.2 51 0.0017 24.6 8.1 79 387-473 21-99 (116)
267 2uwj_G Type III export protein 58.3 49 0.0017 24.6 7.1 79 387-473 20-98 (115)
268 3esl_A Checkpoint serine/threo 54.1 1.1E+02 0.0036 26.4 10.1 77 260-336 71-150 (202)
269 2uwj_G Type III export protein 52.0 71 0.0024 23.8 7.4 46 524-573 49-95 (115)
270 2p58_C Putative type III secre 51.3 74 0.0025 23.8 8.4 46 524-573 50-96 (116)
271 2zu6_B Programmed cell death p 50.3 1.6E+02 0.0055 27.4 12.9 60 447-507 170-231 (307)
272 2nsz_A Programmed cell death p 49.8 70 0.0024 25.2 7.7 24 412-435 11-34 (129)
273 1y8m_A FIS1; mitochondria, unk 49.1 1E+02 0.0035 24.8 12.2 66 441-506 37-105 (144)
274 2wpv_A GET4, UPF0363 protein Y 48.5 1.7E+02 0.0059 27.2 21.4 115 268-397 35-158 (312)
275 1wdy_A 2-5A-dependent ribonucl 44.0 72 0.0025 28.7 8.3 19 271-289 7-25 (285)
276 3pvs_A Replication-associated 40.4 2.1E+02 0.0073 28.2 11.4 38 313-350 267-304 (447)
277 2ion_A PDCD4, programmed cell 39.8 69 0.0024 26.2 6.4 24 412-435 13-36 (152)
278 2r9g_A AAA ATPase, central reg 39.8 1.8E+02 0.0061 24.9 9.2 32 314-346 27-58 (204)
279 1wgl_A TOLL-interacting protei 39.7 72 0.0025 21.1 5.2 47 218-265 11-57 (59)
280 2wvi_A Mitotic checkpoint seri 39.4 87 0.003 25.9 6.9 51 497-548 79-130 (164)
281 3esl_A Checkpoint serine/threo 38.8 1.9E+02 0.0064 24.9 13.1 57 491-548 92-149 (202)
282 3eu9_A Huntingtin-interacting 36.9 47 0.0016 29.0 5.6 19 307-325 45-63 (240)
283 3t8k_A Uncharacterized protein 36.9 88 0.003 26.4 7.1 56 276-336 13-70 (186)
284 4a1g_A Mitotic checkpoint seri 36.6 1.7E+02 0.0059 23.8 8.7 73 261-336 63-136 (152)
285 3txn_A 26S proteasome regulato 34.4 3.3E+02 0.011 26.4 26.4 131 303-435 21-166 (394)
286 4ets_A Ferric uptake regulatio 33.4 88 0.003 25.8 6.2 70 247-317 14-85 (162)
287 4a1g_A Mitotic checkpoint seri 32.7 2E+02 0.0069 23.4 9.9 69 231-301 67-136 (152)
288 3ctd_A Putative ATPase, AAA fa 32.5 2.4E+02 0.0083 24.3 8.9 33 314-346 48-80 (213)
289 1y8m_A FIS1; mitochondria, unk 32.2 2E+02 0.0067 23.2 13.2 72 475-549 36-110 (144)
290 1qsa_A Protein (soluble lytic 32.1 4.5E+02 0.015 27.3 34.8 237 80-330 56-314 (618)
291 2fe3_A Peroxide operon regulat 31.3 1.9E+02 0.0067 23.1 7.9 58 399-457 13-70 (145)
292 1wty_A Hypothetical protein TT 30.1 1.4E+02 0.0048 23.0 6.5 33 495-529 36-68 (119)
293 3jxi_A Vanilloid receptor-rela 29.7 29 0.00099 31.2 2.9 53 382-434 11-72 (260)
294 4fke_A Aminopeptidase N; zinc 29.4 6E+02 0.021 27.9 16.7 157 377-542 690-859 (909)
295 3l6a_A Eukaryotic translation 29.3 3.2E+02 0.011 26.1 10.2 24 270-293 16-39 (364)
296 3txn_A 26S proteasome regulato 29.0 4E+02 0.014 25.7 23.0 59 271-329 104-167 (394)
297 3eiq_C Programmed cell death p 28.3 3.9E+02 0.013 25.4 13.8 65 481-547 220-286 (358)
298 2keb_A DNA polymerase subunit 28.1 1.8E+02 0.0062 21.5 6.9 26 393-418 29-54 (101)
299 2d2s_A Exocyst complex compone 28.0 1.6E+02 0.0055 26.1 7.3 23 414-436 24-46 (235)
300 1oyz_A Hypothetical protein YI 28.0 3.3E+02 0.011 24.3 22.1 17 477-493 205-221 (280)
301 2wvi_A Mitotic checkpoint seri 27.9 2.6E+02 0.0088 23.1 10.1 74 260-336 57-131 (164)
302 3bqo_A Telomeric repeat-bindin 27.7 2.1E+02 0.0073 24.4 7.3 18 416-433 125-142 (211)
303 3jxi_A Vanilloid receptor-rela 27.5 48 0.0016 29.7 4.0 26 275-300 11-36 (260)
304 4ady_A RPN2, 26S proteasome re 27.4 6.5E+02 0.022 27.7 33.7 259 275-542 383-657 (963)
305 3bge_A Predicted ATPase; struc 27.2 2.9E+02 0.01 23.6 8.8 38 313-350 19-56 (201)
306 2nsz_A Programmed cell death p 26.6 2.3E+02 0.0079 22.1 9.2 65 376-441 10-76 (129)
307 2xig_A Ferric uptake regulatio 26.6 2.2E+02 0.0076 22.9 7.5 11 462-472 45-55 (150)
308 3pvs_A Replication-associated 26.5 4.7E+02 0.016 25.7 12.8 37 456-492 268-304 (447)
309 4aez_C MAD3, mitotic spindle c 26.4 2.7E+02 0.0093 24.3 8.2 52 495-547 131-183 (223)
310 3bqo_A Telomeric repeat-bindin 26.0 77 0.0026 27.0 4.4 37 585-621 122-159 (211)
311 3ltm_A Alpha-REP4; protein eng 25.9 3E+02 0.01 23.2 19.9 62 405-471 123-184 (211)
312 1mzb_A Ferric uptake regulatio 25.7 2.1E+02 0.0071 22.6 7.0 58 399-457 9-67 (136)
313 2fu4_A Ferric uptake regulatio 25.5 1.7E+02 0.0059 20.3 6.6 31 426-456 35-65 (83)
314 4g8k_A 2-5A-dependent ribonucl 24.5 4.2E+02 0.014 24.4 10.4 280 270-570 26-322 (337)
315 2d2s_A Exocyst complex compone 24.4 3.7E+02 0.013 23.7 9.5 90 379-471 24-119 (235)
316 3bu8_A Telomeric repeat-bindin 24.3 3.5E+02 0.012 23.5 11.3 48 389-436 88-142 (235)
317 2ion_A PDCD4, programmed cell 23.4 3E+02 0.01 22.3 8.1 25 269-293 12-36 (152)
318 3eyy_A Putative iron uptake re 23.1 2E+02 0.0068 23.0 6.4 57 399-457 10-66 (145)
319 2ijq_A Hypothetical protein; s 23.0 3.2E+02 0.011 22.5 8.5 52 420-471 44-103 (161)
320 1oai_A Nuclear RNA export fact 22.9 1.6E+02 0.0056 19.3 4.7 36 93-128 20-55 (59)
321 2qx5_A Nucleoporin NIC96; mRNA 22.9 6.7E+02 0.023 26.2 21.7 46 130-177 154-199 (661)
322 1ify_A HHR23A, UV excision rep 22.9 1.4E+02 0.0046 18.7 4.2 31 84-116 13-43 (49)
323 2fe3_A Peroxide operon regulat 22.6 1.9E+02 0.0066 23.1 6.3 38 491-529 34-71 (145)
324 2bwb_A Ubiquitin-like protein 22.3 1.5E+02 0.005 18.3 4.6 33 537-569 11-43 (46)
325 4ets_A Ferric uptake regulatio 22.1 2E+02 0.0068 23.6 6.4 73 109-182 13-87 (162)
326 3f3f_C Nucleoporin NUP85; stru 21.7 2.4E+02 0.0082 28.7 7.8 89 339-429 482-570 (570)
327 3bge_A Predicted ATPase; struc 21.4 3.8E+02 0.013 22.8 8.7 32 421-452 20-51 (201)
328 1wdy_A 2-5A-dependent ribonucl 21.3 3E+02 0.01 24.3 8.3 45 386-430 192-238 (285)
329 2w57_A Ferric uptake regulatio 21.1 2.4E+02 0.0081 22.7 6.6 35 423-457 32-66 (150)
330 4aez_C MAD3, mitotic spindle c 20.9 4.2E+02 0.014 23.1 9.2 51 391-441 132-183 (223)
331 3ltm_A Alpha-REP4; protein eng 20.9 3.8E+02 0.013 22.5 16.3 152 372-541 32-183 (211)
332 3eyy_A Putative iron uptake re 20.8 2.6E+02 0.0089 22.3 6.7 57 258-316 11-67 (145)
333 2r9g_A AAA ATPase, central reg 20.7 4E+02 0.014 22.8 10.7 36 421-457 27-62 (204)
334 2b7e_A PRE-mRNA processing pro 20.6 84 0.0029 20.8 2.8 35 145-179 2-37 (59)
335 3hra_A Ankyrin repeat family p 20.5 84 0.0029 26.5 4.0 186 273-467 9-199 (201)
336 1z96_A DNA-damage, UBA-domain 20.2 1.3E+02 0.0044 17.5 3.6 25 92-116 15-39 (40)
337 1wgn_A UBAP1, ubiquitin associ 20.1 1.2E+02 0.0041 20.1 3.4 24 92-115 30-53 (63)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.7e-36 Score=321.97 Aligned_cols=479 Identities=8% Similarity=-0.077 Sum_probs=379.9
Q ss_pred CCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHH
Q 037477 106 DNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAA 185 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~ 185 (639)
.+.+..+...|+.++. +++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..+..+|.+.|+++++.
T Consensus 66 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~- 137 (597)
T 2xpi_A 66 DGSFLKERNAQNTDSL-----SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAK- 137 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHH-
T ss_pred cCccCCCCCccccchH-----HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHH-
Confidence 3556667777777765 7899999999999999999999999999985 4588899999999999999887764
Q ss_pred HHHHHHHHhhhccchhHHHHHHHHHhcCCchHHHHHHHhhccCcCCHHHHHHHHHHhccChHHHHHHHHHHhccCCCCCC
Q 037477 186 LNQFHDGMVKEIAMDNVAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKHN 265 (639)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p~ 265 (639)
.++..+......+.+...+..+|.+.|..+++...+++....... +...+.......+.+++
T Consensus 138 --~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~ 199 (597)
T 2xpi_A 138 --CLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKD----------------EKNANKLLMQDGGIKLE 199 (597)
T ss_dssp --HHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC--------------------------CCCSSCCHH
T ss_pred --HHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccc----------------ccccccccccccccchh
Confidence 556666555556668889999999988888888888853211100 00001111123455667
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHH--------------------------------------HH
Q 037477 266 TITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYI--------------------------------------KI 307 (639)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~--------------------------------------~l 307 (639)
..+|+.++.+|.+.|++++|.++|++|.+.+ +.+...+. .+
T Consensus 200 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 278 (597)
T 2xpi_A 200 ASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLK 278 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHH
Confidence 8899999999999999999999999988764 22333333 33
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC
Q 037477 308 SRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLG 387 (639)
Q Consensus 308 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 387 (639)
+..|.+.|++++|.++|+++.+. .++..+++.+..++.+.+ +.+.+..+++.+.+.+. .+..+++.++.+|.+.|
T Consensus 279 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g 353 (597)
T 2xpi_A 279 LNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRS--RFIDVLAITTKILEIDP-YNLDVYPLHLASLHESG 353 (597)
T ss_dssp SCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHT
T ss_pred HHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhC
Confidence 55677889999999999999876 589999999999999887 57788888888887653 36788999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 037477 388 RFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFA 467 (639)
Q Consensus 388 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 467 (639)
++++|.++++++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+... .+..+|+.++.+|.+.|++++|.++|+
T Consensus 354 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 431 (597)
T 2xpi_A 354 EKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYT 431 (597)
T ss_dssp CHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999998664 56788999999999999999999999999987543 368899999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----
Q 037477 468 KMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQ---- 543 (639)
Q Consensus 468 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 543 (639)
++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+.. ..+..+|+.++..|.+.|++++|.++|+++.+.
T Consensus 432 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 508 (597)
T 2xpi_A 432 TAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT 508 (597)
T ss_dssp HHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc
Confidence 999875 4578999999999999999999999999998762 336789999999999999999999999999875
Q ss_pred CCCCC--hHhHH---HHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCccccCChhHHH
Q 037477 544 NYPPF--PEPFV---QYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHHIRQDSKISL 618 (639)
Q Consensus 544 ~~~p~--~~~~~---~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 618 (639)
+..|+ ..++. .++.+.|++++|.++++++.+..|.+..+|..+..+|.+.|++++|.+.++++....+..+....
T Consensus 509 ~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 588 (597)
T 2xpi_A 509 QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASD 588 (597)
T ss_dssp CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHH
Confidence 66777 34443 44578899999999999999888889999999999999999999999999998655555555554
Q ss_pred hhh
Q 037477 619 LFG 621 (639)
Q Consensus 619 l~~ 621 (639)
.++
T Consensus 589 ~l~ 591 (597)
T 2xpi_A 589 LLK 591 (597)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-32 Score=296.18 Aligned_cols=467 Identities=9% Similarity=-0.059 Sum_probs=374.3
Q ss_pred CCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHH
Q 037477 106 DNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAA 185 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~ 185 (639)
.|++++|+.+|+.+.. ..|+..+|..++..|.+.|++++|..+|+++... +++..+++.++.+|.+.|+++++..
T Consensus 97 ~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 171 (597)
T 2xpi_A 97 QQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALN 171 (597)
T ss_dssp TTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHH
Confidence 6899999999999975 3378899999999999999999999999988654 6889999999999999999888764
Q ss_pred HHHHHHHHhhhc-----------------cchhHHHHHHHHHhcCCchHHHHHHHhhcc--CcCCHHHHHHHHHHhccCh
Q 037477 186 LNQFHDGMVKEI-----------------AMDNVAKTLVDVVLGSDWDDKIGKKLEDMK--IELSDNFVLTVLKELRIYP 246 (639)
Q Consensus 186 ~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~ 246 (639)
. ++...... ....++..+..+|.+.|..+++...++++. .+..+..............
T Consensus 172 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 248 (597)
T 2xpi_A 172 L---LGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTA 248 (597)
T ss_dssp H---HCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCH
T ss_pred H---HhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccc
Confidence 4 44322211 123467888899999999988888888874 2223333222211111111
Q ss_pred HHHHHH-----HHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037477 247 VKALGF-----FRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAV 321 (639)
Q Consensus 247 ~~A~~~-----f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 321 (639)
...... |..+. ..+..++..+|+.++..|.+.|++++|.++|+++.+. +++..+|+.++.+|.+.|++++|+
T Consensus 249 ~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 325 (597)
T 2xpi_A 249 DEEWDLVLKLNYSTYS-KEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVL 325 (597)
T ss_dssp HHHHHHHHHSCTHHHH-GGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHhcCCcccc-cchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHH
Confidence 111111 23332 2233445566777788899999999999999998876 679999999999999999999999
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 037477 322 KLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKN 401 (639)
Q Consensus 322 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 401 (639)
++|+++.+.+ +.+..++..++.++...+ +...+..++..+.+. .+.+..+++.++.+|.+.|++++|.++|+++.+
T Consensus 326 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 401 (597)
T 2xpi_A 326 AITTKILEID-PYNLDVYPLHLASLHESG--EKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSST 401 (597)
T ss_dssp HHHHHHHHHC-TTCCTTHHHHHHHHHHHT--CHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-cccHHHHHHHHHHHHHhC--CHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 9999998754 336778888888888777 466788888877744 345678899999999999999999999999987
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 037477 402 AGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLL 481 (639)
Q Consensus 402 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 481 (639)
.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+. .+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|
T Consensus 402 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 478 (597)
T 2xpi_A 402 MD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLL 478 (597)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 64 45688999999999999999999999999998754 378999999999999999999999999999875 4578999
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhH---H
Q 037477 482 DVLINGFLSQKRVNGAYKLLVEMIEKV---RLRPW--QATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPF---V 553 (639)
Q Consensus 482 ~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~---~ 553 (639)
+.++.+|.+.|++++|.++|+++.+.. +..|+ ..+|..+..+|.+.|++++|.++++++.+.+ +.+..++ .
T Consensus 479 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~ 557 (597)
T 2xpi_A 479 NELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIA 557 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 999999999999999999999997752 55777 7899999999999999999999999998754 2244444 3
Q ss_pred HHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 037477 554 QYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFF 591 (639)
Q Consensus 554 ~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 591 (639)
.++...|++++|.++|+++.+..|.+...|..+..+|.
T Consensus 558 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 558 LVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 44578899999999999999999999999998887764
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.98 E-value=2e-31 Score=276.18 Aligned_cols=216 Identities=16% Similarity=0.152 Sum_probs=171.6
Q ss_pred hHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHH
Q 037477 283 RDFWNVVEEMKKEGYEMDI-DTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVA 361 (639)
Q Consensus 283 ~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~ 361 (639)
..+..+.+.+.+++..+.+ ..++.+|.+|++.|++++|+++|++|.+.|++||..|||+||.+|++.+....
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~------- 79 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATE------- 79 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSS-------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhh-------
Confidence 3455556666666655443 35777788888888888888888888888888888888888887776553221
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 037477 362 NKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIP 441 (639)
Q Consensus 362 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 441 (639)
..+.+.+++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.|
T Consensus 80 ---------------------~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P 138 (501)
T 4g26_A 80 ---------------------SSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP 138 (501)
T ss_dssp ---------------------SSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC
T ss_pred ---------------------hhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Confidence 12345678899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 037477 442 DIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLI 521 (639)
Q Consensus 442 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 521 (639)
|..||+++|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+. +..|+..||+.++
T Consensus 139 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~ 217 (501)
T 4g26_A 139 RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIE 217 (501)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHH
T ss_pred ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999887 8999999999999
Q ss_pred HHHHhc
Q 037477 522 EKLLGA 527 (639)
Q Consensus 522 ~~~~~~ 527 (639)
..|+..
T Consensus 218 ~~F~s~ 223 (501)
T 4g26_A 218 EWFKSE 223 (501)
T ss_dssp HHHHSH
T ss_pred HHHhcC
Confidence 988763
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.3e-30 Score=270.13 Aligned_cols=205 Identities=16% Similarity=0.252 Sum_probs=172.3
Q ss_pred HHHHHHHHhccCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------HH
Q 037477 249 ALGFFRWVGEHSGYKHN-TITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRM---------ME 318 (639)
Q Consensus 249 A~~~f~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---------~~ 318 (639)
+..+++.+. +.+..+. ...++.+|++|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+. ++
T Consensus 9 ~e~L~~~~~-~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 9 SENLSRKAK-KKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred HHHHHHHHH-HhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344444443 4444443 456899999999999999999999999999999999999999999988765 56
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHH
Q 037477 319 DAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKA 398 (639)
Q Consensus 319 ~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 398 (639)
+|.++|++|.+.|+.||.. +|+++|.+|++.|++++|.++|++
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~-------------------------------------tyn~lI~~~~~~g~~~~A~~l~~~ 130 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEA-------------------------------------TFTNGARLAVAKDDPEMAFDMVKQ 130 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHH-------------------------------------HHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHH-------------------------------------HHHHHHHHHHhcCCHHHHHHHHHH
Confidence 7777777777666666555 456667778888999999999999
Q ss_pred HHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 037477 399 MKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADA 478 (639)
Q Consensus 399 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 478 (639)
|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.+++++|.+.|..|+.
T Consensus 131 M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~ 210 (501)
T 4g26_A 131 MKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSK 210 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCH
T ss_pred HHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcC
Q 037477 479 DLLDVLINGFLSQ 491 (639)
Q Consensus 479 ~~~~~li~~~~~~ 491 (639)
.||+.++..|+..
T Consensus 211 ~T~~~l~~~F~s~ 223 (501)
T 4g26_A 211 STFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHHSH
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998764
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=5.4e-22 Score=201.86 Aligned_cols=372 Identities=12% Similarity=0.021 Sum_probs=262.6
Q ss_pred CCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHH
Q 037477 106 DNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAA 185 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~ 185 (639)
.|++++|++.|+.+.+..+ .+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++++
T Consensus 12 ~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~--- 85 (388)
T 1w3b_A 12 AGDFEAAERHCMQLWRQEP--DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE--- 85 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH---
T ss_pred CCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH---
Confidence 4788888888877766321 344556666677777888888888877766543 3456677777776666654443
Q ss_pred HHHHHHHHhhhccchhHHHHHHHHHhcCCchHHHHHHHhhccCcCCHHHHHHHHHHhccChHHHHHHHHHHhccCCCCCC
Q 037477 186 LNQFHDGMVKEIAMDNVAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKHN 265 (639)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p~ 265 (639)
|+..|+.+.+.. +.+
T Consensus 86 ---------------------------------------------------------------A~~~~~~al~~~--p~~ 100 (388)
T 1w3b_A 86 ---------------------------------------------------------------AIEHYRHALRLK--PDF 100 (388)
T ss_dssp ---------------------------------------------------------------HHHHHHHHHHHC--TTC
T ss_pred ---------------------------------------------------------------HHHHHHHHHHcC--cch
Confidence 444444443211 224
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 037477 266 TITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRS 345 (639)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~ 345 (639)
..+|..+...+.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++.+. .|
T Consensus 101 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p----------- 166 (388)
T 1w3b_A 101 IDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--QP----------- 166 (388)
T ss_dssp HHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--CT-----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CC-----------
Confidence 5677888888888888888888888877763 334556677777777788888888888777542 11
Q ss_pred HhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHH
Q 037477 346 ISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFE 425 (639)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 425 (639)
.+..+|..+...+...|++++|.+.|+++.+.+ +.+...|..+...+...|+++
T Consensus 167 -------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~ 220 (388)
T 1w3b_A 167 -------------------------NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFD 220 (388)
T ss_dssp -------------------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTT
T ss_pred -------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHH
Confidence 123456667777888888888888888887764 345667777888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 037477 426 DACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMI 505 (639)
Q Consensus 426 ~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 505 (639)
+|...|++..+.... +..++..+...|...|++++|.+.++++.+.+ +.+..+|..+...|.+.|++++|...|+++.
T Consensus 221 ~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 298 (388)
T 1w3b_A 221 RAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298 (388)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888887765422 56778888888888888888888888888764 3356778888888888888888888888887
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-Hh---HHHHHhhcCCHHHHHHHHHHhhcCCCCCHH
Q 037477 506 EKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFP-EP---FVQYISKFGTVEDASEFLKALSVKEYPSSA 581 (639)
Q Consensus 506 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~---~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~ 581 (639)
+. ...+..+|..+...+.+.|++++|.+.++++.+. .|+. .+ +..++.+.|++++|...|+++.+..|.+..
T Consensus 299 ~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 374 (388)
T 1w3b_A 299 RL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374 (388)
T ss_dssp HH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHH
T ss_pred hh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Confidence 65 2345677888888888888888888888888763 3442 22 233346778888888888888877777888
Q ss_pred HHHHHHHHHHhcC
Q 037477 582 AYLQVFESFFNEG 594 (639)
Q Consensus 582 ~~~~l~~~~~~~g 594 (639)
.|..+...+...|
T Consensus 375 a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 375 AYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHhHHHHHHHcc
Confidence 8888777776655
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.93 E-value=3e-22 Score=203.73 Aligned_cols=317 Identities=15% Similarity=0.093 Sum_probs=261.3
Q ss_pred hHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037477 246 PVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFE 325 (639)
Q Consensus 246 ~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~ 325 (639)
.++|..+++...+. .+.+..+|..+...|.+.|++++|.+.|+++.+.. +.+..+|..+..++.+.|++++|++.|+
T Consensus 49 ~~~a~~~~~~a~~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 125 (388)
T 1w3b_A 49 LDRSAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYV 125 (388)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33444444444322 24577889999999999999999999999988763 4456778999999999999999999998
Q ss_pred HhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 037477 326 FMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFE 405 (639)
Q Consensus 326 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 405 (639)
++.+. .|+ +...+..+...+...|++++|.+.|+++.+.. +
T Consensus 126 ~al~~--~p~------------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p 166 (388)
T 1w3b_A 126 SALQY--NPD------------------------------------LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-P 166 (388)
T ss_dssp HHHHH--CTT------------------------------------CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-T
T ss_pred HHHHh--CCC------------------------------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-C
Confidence 87653 222 22345567778889999999999999998874 4
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037477 406 PDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLI 485 (639)
Q Consensus 406 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 485 (639)
.+..+|..+...|...|++++|...|+++.+.+.. +...|..+...+...|++++|...+++..+.. +.+..++..+.
T Consensus 167 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 244 (388)
T 1w3b_A 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLA 244 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHH
Confidence 46789999999999999999999999999987543 67889999999999999999999999998874 34688899999
Q ss_pred HHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhH---HHHHhhcCCH
Q 037477 486 NGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPF---VQYISKFGTV 562 (639)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~---~~ll~~~g~~ 562 (639)
..|.+.|++++|...|+++.+.. ..+..+|..+...+.+.|++++|.+.++++.+.. +.+..++ ..++...|++
T Consensus 245 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 321 (388)
T 1w3b_A 245 CVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNI 321 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCH
Confidence 99999999999999999998752 2246789999999999999999999999998742 2333443 3344688999
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCcc
Q 037477 563 EDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHH 609 (639)
Q Consensus 563 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 609 (639)
++|...++++.+..|.+...|..+..+|.+.|++++|.+.++++...
T Consensus 322 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 322 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999997443
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=7.3e-20 Score=193.46 Aligned_cols=259 Identities=12% Similarity=-0.017 Sum_probs=208.7
Q ss_pred CCchhHHHHHHHHHHh-----cCC--------CCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 037477 351 NPDLGLVFRVANKYES-----LGN--------SLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFG 417 (639)
Q Consensus 351 ~~~~~~~~~~~~~~~~-----~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 417 (639)
..+...+...+..... ... +.+..++..+...+...|++++|.+.|+.+.+.. |+...+..+...
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~ 279 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALI 279 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHH
Confidence 3456666666666655 211 2234577888899999999999999999998875 348888999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHH
Q 037477 418 LCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGA 497 (639)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 497 (639)
|...|++++|...++++.+.... +...|..+...|...|++++|...+++..+.. +.+...+..+...|...|++++|
T Consensus 280 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 357 (514)
T 2gw1_A 280 MADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDC 357 (514)
T ss_dssp HHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999876533 67789999999999999999999999999875 33677888899999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC-------hHhHHHHHhh---cCCHHHHH
Q 037477 498 YKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYP-PF-------PEPFVQYISK---FGTVEDAS 566 (639)
Q Consensus 498 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~-------~~~~~~ll~~---~g~~~~a~ 566 (639)
...|+.+.+...- +...|..+...+...|++++|.+.++++.+.... ++ ...+..++.. .|++++|.
T Consensus 358 ~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~ 435 (514)
T 2gw1_A 358 ETLFSEAKRKFPE--APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEAT 435 (514)
T ss_dssp HHHHHHHHHHSTT--CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHH
T ss_pred HHHHHHHHHHccc--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHH
Confidence 9999999876322 4568888899999999999999999998763211 21 1223344467 89999999
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCccccCChh
Q 037477 567 EFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHHIRQDSK 615 (639)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 615 (639)
..++++.+..|.+...+..+..+|.+.|++++|.+.+++........+.
T Consensus 436 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 484 (514)
T 2gw1_A 436 NLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEE 484 (514)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHH
Confidence 9999999888889999999999999999999999999986444333333
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.87 E-value=3.7e-19 Score=184.69 Aligned_cols=307 Identities=14% Similarity=0.082 Sum_probs=206.3
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 037477 263 KHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLL 342 (639)
Q Consensus 263 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l 342 (639)
+.+...+..+...+.+.|++++|..+|+++.+.. +.+..+|..+..+|...|++++|+..|+.+.+.+ |+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~------- 92 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MD------- 92 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-------
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CC-------
Confidence 3467788888899999999999999999988763 4578889999999999999999999998886532 11
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH---HhHHHH-----
Q 037477 343 LRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDN---ITYSQV----- 414 (639)
Q Consensus 343 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~l----- 414 (639)
+..++..+..+|.+.|++++|.+.|+++.+.. +.+. ..+..+
T Consensus 93 -----------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 142 (450)
T 2y4t_A 93 -----------------------------FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDE 142 (450)
T ss_dssp -----------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHH
T ss_pred -----------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHH
Confidence 22345556666777777777777777776553 1222 444444
Q ss_pred -------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037477 415 -------IFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLING 487 (639)
Q Consensus 415 -------i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 487 (639)
...+...|++++|...|+++.+... .+...+..+...|.+.|++++|.+.|+++.+.. +.+..++..+..+
T Consensus 143 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 220 (450)
T 2y4t_A 143 MQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTL 220 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3336677777777777777766542 256667777777777777777777777776653 3456677777777
Q ss_pred HHcCCChhHHHHHHHHHHHhCCCCCC-HHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCChH----
Q 037477 488 FLSQKRVNGAYKLLVEMIEKVRLRPW-QATFKTL------------IEKLLGARRLEEAMNLLRLMKKQNYPPFPE---- 550 (639)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---- 550 (639)
|...|++++|...|+++.+. .|+ ...+..+ ...|.+.|++++|.+.++++.+. .|+..
T Consensus 221 ~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~ 295 (450)
T 2y4t_A 221 YYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTV 295 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHH
Confidence 77777777777777777654 232 3333333 56677777777777777777662 23321
Q ss_pred -hH---HHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCccccCChhH
Q 037477 551 -PF---VQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHHIRQDSKI 616 (639)
Q Consensus 551 -~~---~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 616 (639)
.+ ..++.+.|++++|...++++.+..|.+...|..+..+|...|++++|.+.+++.....+..+..
T Consensus 296 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 365 (450)
T 2y4t_A 296 RSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQI 365 (450)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHH
Confidence 11 2233566777777777777776666677777777777777777777777777753333333333
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.86 E-value=2.1e-18 Score=178.96 Aligned_cols=328 Identities=10% Similarity=-0.000 Sum_probs=261.0
Q ss_pred ccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037477 243 RIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVK 322 (639)
Q Consensus 243 ~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 322 (639)
.+++++|+.+|+.+.+. .+.+..+|..+..+|.+.|++++|...|+++.+.+ +.+..+|..+...|.+.|++++|..
T Consensus 39 ~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 115 (450)
T 2y4t_A 39 AGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAED 115 (450)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 57889999999988643 24578999999999999999999999999999875 4578899999999999999999999
Q ss_pred HHHHhhcCCCCCCH----HHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHH
Q 037477 323 LFEFMMDGPYKPSV----QDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKA 398 (639)
Q Consensus 323 l~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 398 (639)
.|+.+.+. .|+. ..+..+...+.. ..+..+...+...|++++|.+.|+.
T Consensus 116 ~~~~~~~~--~~~~~~~~~~~~~l~~~~~~-------------------------~~~~~~a~~~~~~~~~~~A~~~~~~ 168 (450)
T 2y4t_A 116 DFKKVLKS--NPSENEEKEAQSQLIKSDEM-------------------------QRLRSQALNAFGSGDYTAAIAFLDK 168 (450)
T ss_dssp HHHHHHTS--CCCHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhc--CCCChhhHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999875 4543 344444333211 1133456678889999999999999
Q ss_pred HHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 037477 399 MKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADA 478 (639)
Q Consensus 399 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 478 (639)
+.+.. +.+...+..+..+|.+.|++++|...|+++.+... .+..+|..+...|...|++++|...|+++.+.. +.+.
T Consensus 169 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~ 245 (450)
T 2y4t_A 169 ILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHK 245 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChH
Confidence 98765 45788899999999999999999999999987643 368899999999999999999999999999764 3345
Q ss_pred HHHHHH------------HHHHHcCCChhHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 037477 479 DLLDVL------------INGFLSQKRVNGAYKLLVEMIEKVRLRPW--QATFKTLIEKLLGARRLEEAMNLLRLMKKQN 544 (639)
Q Consensus 479 ~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 544 (639)
..+..+ ...|.+.|++++|...|+.+.+...-.|. ...|..+...+.+.|++++|++.++++.+.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~- 324 (450)
T 2y4t_A 246 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM- 324 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 555444 78899999999999999999876222111 457888999999999999999999998873
Q ss_pred CCCC-hHhH---HHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH------------HHhcC-----CHHHHHHHH
Q 037477 545 YPPF-PEPF---VQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFES------------FFNEG-----RHYEAKDLL 603 (639)
Q Consensus 545 ~~p~-~~~~---~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~ 603 (639)
.|+ ...+ ..++...|++++|...++++.+..|.+...+..+..+ |...| +.+++.+.+
T Consensus 325 -~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y 403 (450)
T 2y4t_A 325 -EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAY 403 (450)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHH
T ss_pred -CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHH
Confidence 343 3333 3444688999999999999999988899999888843 44444 556667777
Q ss_pred hh
Q 037477 604 YK 605 (639)
Q Consensus 604 ~~ 605 (639)
++
T Consensus 404 ~~ 405 (450)
T 2y4t_A 404 RK 405 (450)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.84 E-value=9.1e-18 Score=177.31 Aligned_cols=430 Identities=13% Similarity=0.014 Sum_probs=269.2
Q ss_pred CCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHH
Q 037477 106 DNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAA 185 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~ 185 (639)
.|+++.|+..|+.+.+.. |+...|..+...+.+.|++++|+..|+++.+.+ +.+..++..+..++...|+++++..
T Consensus 19 ~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 94 (514)
T 2gw1_A 19 NKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMF 94 (514)
T ss_dssp TSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 599999999999999833 799999999999999999999999999999875 3466789999999999998887754
Q ss_pred HHHHHHHHhhhccch-hHHHHHHHHHhcCCchHHHHHHHhhc---cC---cCCHHHHHHHHHHhc--cChHHHHHHHHHH
Q 037477 186 LNQFHDGMVKEIAMD-NVAKTLVDVVLGSDWDDKIGKKLEDM---KI---ELSDNFVLTVLKELR--IYPVKALGFFRWV 256 (639)
Q Consensus 186 ~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~l~~~~--~~~~~A~~~f~~~ 256 (639)
.+..+....... .....++..+............+..+ .. ......-........ .....+...+...
T Consensus 95 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (514)
T 2gw1_A 95 ---DLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIF 171 (514)
T ss_dssp ---HHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTS
T ss_pred ---HHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhc
Confidence 455555543221 12222222221111111111111000 00 000000000000000 0000111111111
Q ss_pred hccCCC-----CCCHHHHHHHHHHHHc---CCChhHHHHHHHHHHH-----CCC--------CCCHHHHHHHHHHHHhcC
Q 037477 257 GEHSGY-----KHNTITYNGILRVLAR---HESVRDFWNVVEEMKK-----EGY--------EMDIDTYIKISRQFQKFR 315 (639)
Q Consensus 257 ~~~~~~-----~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~-----~g~--------~p~~~~~~~li~~~~~~g 315 (639)
...... +.+...+......+.. .|++++|...|+++.+ ..- +.+..++..+...+...|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (514)
T 2gw1_A 172 KPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKN 251 (514)
T ss_dssp CCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCC
Confidence 000000 1124455555554554 8999999999999887 311 234667888889999999
Q ss_pred CHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHH
Q 037477 316 MMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKM 395 (639)
Q Consensus 316 ~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 395 (639)
++++|...|+.+.+.. |+ ...+..+..+|...|++++|.+.
T Consensus 252 ~~~~A~~~~~~~l~~~--~~-------------------------------------~~~~~~l~~~~~~~~~~~~A~~~ 292 (514)
T 2gw1_A 252 DPLGAHEDIKKAIELF--PR-------------------------------------VNSYIYMALIMADRNDSTEYYNY 292 (514)
T ss_dssp CHHHHHHHHHHHHHHC--CC-------------------------------------HHHHHHHHHHHHTSSCCTTGGGH
T ss_pred CHHHHHHHHHHHHhhC--cc-------------------------------------HHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999886532 22 23345566677777777778777
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 037477 396 MKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYD 475 (639)
Q Consensus 396 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 475 (639)
++.+.+.. +.+...|..+...|...|++++|...|++..+.... +...+..+...|...|++++|...++++.+.. +
T Consensus 293 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 369 (514)
T 2gw1_A 293 FDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-P 369 (514)
T ss_dssp HHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-c
Confidence 77777654 345667777777777788888888888777765433 45677777777777888888888887777653 3
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCC
Q 037477 476 ADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW----QATFKTLIEKLLG---ARRLEEAMNLLRLMKKQNYPPF 548 (639)
Q Consensus 476 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~ 548 (639)
.+..++..+...|...|++++|...|+.+.+...-.++ ...|..+...+.. .|++++|.+.++++.+.. |+
T Consensus 370 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~ 447 (514)
T 2gw1_A 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD--PR 447 (514)
T ss_dssp TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC--TT
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC--cc
Confidence 34566777777777788888888887777654222222 3367777777777 788888888887777632 33
Q ss_pred hH-h---HHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHH
Q 037477 549 PE-P---FVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQV 586 (639)
Q Consensus 549 ~~-~---~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 586 (639)
.. . +..++...|+.++|...|++..+..|.+...+..+
T Consensus 448 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 448 SEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 22 2 23334567888888888887777766666665544
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.83 E-value=1.7e-17 Score=176.42 Aligned_cols=347 Identities=11% Similarity=-0.037 Sum_probs=237.2
Q ss_pred cChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHhcCCH
Q 037477 244 IYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKE------GYEMDIDTYIKISRQFQKFRMM 317 (639)
Q Consensus 244 ~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p~~~~~~~li~~~~~~g~~ 317 (639)
++.++|+..|+.+.. .|+ ..+..+..+...+...+|...++.+... ...|+... +..+....+.
T Consensus 107 g~~~~A~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~ 176 (537)
T 3fp2_A 107 GNFTDAMFDLSVLSL----NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTS----LASFFGIFDS 176 (537)
T ss_dssp TCHHHHHHHHHHHC-----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHH----HHHHHHTSCH
T ss_pred CCHHHHHHHHHHHhc----CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhH----HHHHHHhcCh
Confidence 556678888864421 222 2222344555555667777777777543 12233322 2233344444
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCC-------CchhHHHHHHHHHHhcCCCCC------hhhHHHHHHHHH
Q 037477 318 EDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINN-------PDLGLVFRVANKYESLGNSLS------KSVYDGIHRALT 384 (639)
Q Consensus 318 ~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~------~~~~~~li~~~~ 384 (639)
+.+...+..... ..+....+...+........ .+...+...+..+.+...... ..++..+...+.
T Consensus 177 ~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 177 HLEVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHH
Confidence 444443333221 12222222222221111110 123344455554444322211 224666778888
Q ss_pred ccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 037477 385 KLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALL 464 (639)
Q Consensus 385 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~ 464 (639)
..|++++|.+.|+...+. .|+...|..+...|...|++++|...|+++.+.... +..+|..+...+...|++++|..
T Consensus 255 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999999999987 466888999999999999999999999999886533 67899999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 037477 465 CFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQN 544 (639)
Q Consensus 465 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 544 (639)
.+++..+.. +.+...+..+...|...|++++|...|+++.+.. ..+...+..+...+...|++++|.+.++++.+..
T Consensus 332 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 332 DFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 999999875 3356788899999999999999999999998863 2345688889999999999999999999987632
Q ss_pred CC-CC-hHh------HHHHHhhc----------CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 545 YP-PF-PEP------FVQYISKF----------GTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 545 ~~-p~-~~~------~~~ll~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
.. +. ... ...++... |++++|...|++..+..|.+...|..+..+|.+.|++++|.+.+++.
T Consensus 409 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 11 11 111 12334555 99999999999999988999999999999999999999999999986
Q ss_pred Cc
Q 037477 607 PH 608 (639)
Q Consensus 607 ~~ 608 (639)
..
T Consensus 489 l~ 490 (537)
T 3fp2_A 489 AI 490 (537)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.81 E-value=9.2e-17 Score=160.84 Aligned_cols=307 Identities=14% Similarity=0.076 Sum_probs=224.8
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 037477 265 NTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLR 344 (639)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~ 344 (639)
|...+..+...+.+.|++++|...|+++.+.. +.+..+|..+...+...|++++|+..|+.+.+. .|+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~--------- 69 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--KMD--------- 69 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTT---------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCC---------
Confidence 34567777788888888888988888887764 446778888888888888888888888877643 111
Q ss_pred HHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCC--CCHHhHHHH--------
Q 037477 345 SISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFE--PDNITYSQV-------- 414 (639)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~l-------- 414 (639)
+...+..+..++...|++++|.+.|++..+.... .+...+..+
T Consensus 70 ---------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (359)
T 3ieg_A 70 ---------------------------FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQR 122 (359)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------cchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHH
Confidence 2234566777777888888888888888765310 233344433
Q ss_pred ----HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 037477 415 ----IFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLS 490 (639)
Q Consensus 415 ----i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (639)
...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+.. +.+..++..+...|..
T Consensus 123 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 200 (359)
T 3ieg_A 123 LRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQ 200 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 4677888888888888888877653 367788888888888888888888888888764 4567788888888888
Q ss_pred CCChhHHHHHHHHHHHhCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHh-------
Q 037477 491 QKRVNGAYKLLVEMIEKVRLRPWQATFK------------TLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEP------- 551 (639)
Q Consensus 491 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~------- 551 (639)
.|++++|...|+...+...- +...+. .+...+.+.|++++|.+.++++.+.. |+...
T Consensus 201 ~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~ 276 (359)
T 3ieg_A 201 LGDHELSLSEVRECLKLDQD--HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKE 276 (359)
T ss_dssp HTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCcc--chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHH
Confidence 88888888888888765222 222222 22556788899999999998888733 33221
Q ss_pred -HHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCccccCChhH
Q 037477 552 -FVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHHIRQDSKI 616 (639)
Q Consensus 552 -~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 616 (639)
+..++...|++++|...+++..+..|.+...|..+..+|.+.|++++|.+.+++.....+..+..
T Consensus 277 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 342 (359)
T 3ieg_A 277 RICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQI 342 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHH
Confidence 22334577899999999988888888888899999999999999999999988864444444433
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.80 E-value=6.1e-16 Score=164.30 Aligned_cols=79 Identities=9% Similarity=0.049 Sum_probs=66.0
Q ss_pred CCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHH
Q 037477 106 DNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAA 185 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~ 185 (639)
.|+++.|+..|+.+.+..+ .++..|..+...|.+.|++++|+..|++..+.+ +.+..++..+...+...|+++++..
T Consensus 38 ~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~ 114 (537)
T 3fp2_A 38 AKNFNEAIKYYQYAIELDP--NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMF 114 (537)
T ss_dssp TTCCC-CHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hccHHHHHHHHHHHHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 6899999999999987432 478899999999999999999999999998875 3467788889999999998888765
Q ss_pred HH
Q 037477 186 LN 187 (639)
Q Consensus 186 ~~ 187 (639)
..
T Consensus 115 ~~ 116 (537)
T 3fp2_A 115 DL 116 (537)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 14
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.77 E-value=1.3e-19 Score=192.31 Aligned_cols=151 Identities=14% Similarity=0.147 Sum_probs=127.0
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHH---CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 037477 372 SKSVYDGIHRALTKLGRFDEAEKMMKAMKN---AGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTI 448 (639)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 448 (639)
-..+||++|++||+.|++++|.++|++|.+ .|+.||.+|||+||++||+.|++++|.++|++|.+.|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 346899999999999999999999988764 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC------HHHHHHHH
Q 037477 449 LIQGHCAANE-VDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW------QATFKTLI 521 (639)
Q Consensus 449 li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~------~~~~~~li 521 (639)
+|.++|+.|+ .++|.++|++|.+.|+.||..+|++++.++.+. ..++..+++.. +..|+ ..+...|.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~P--~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVKP--TFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGCC--CCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhCc--ccCCCCCCcccccchHHHH
Confidence 9999999998 578999999999999999999999999877664 33444444422 33333 44455566
Q ss_pred HHHHhcC
Q 037477 522 EKLLGAR 528 (639)
Q Consensus 522 ~~~~~~g 528 (639)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 6676654
No 15
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=184.34 Aligned_cols=137 Identities=7% Similarity=0.037 Sum_probs=120.3
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH---HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 037477 405 EPDNITYSQVIFGLCKAGRFEDACNVLDEME---ENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLL 481 (639)
Q Consensus 405 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 481 (639)
..-..|||+||++||+.|++++|.++|++|. ..|+.||.+|||+||.+||+.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3345689999999999999999999998876 4589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCh-hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 037477 482 DVLINGFLSQKRV-NGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPP 547 (639)
Q Consensus 482 ~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 547 (639)
|+||+++++.|+. ++|.++|++|.++ |+.||..+|++++.++.+ +.+++.++++ ..++.|
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR----~~vL~~Vrkv-~P~f~p 264 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDR----ATVLKAVHKV-KPTFSL 264 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHH----HHHHHHHGGG-CCCCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhH----HHHHHHHHHh-CcccCC
Confidence 9999999999984 7899999999998 999999999999987766 3445555555 334444
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.77 E-value=7.1e-15 Score=147.00 Aligned_cols=317 Identities=8% Similarity=-0.027 Sum_probs=248.5
Q ss_pred ccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037477 243 RIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVK 322 (639)
Q Consensus 243 ~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 322 (639)
.+++++|+..|+.+.+.. +.+..++..+...+...|++++|...++++.+.. +.+...|..+...+...|++++|..
T Consensus 16 ~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 92 (359)
T 3ieg_A 16 AGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAED 92 (359)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHH
Confidence 588999999999886432 3468899999999999999999999999998874 4477899999999999999999999
Q ss_pred HHHHhhcCCCCC---CHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHH
Q 037477 323 LFEFMMDGPYKP---SVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAM 399 (639)
Q Consensus 323 l~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (639)
.|+...+. .| +.......+..+. ....+..+...+...|++++|.+.++.+
T Consensus 93 ~~~~~~~~--~~~~~~~~~~~~~l~~~~------------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 146 (359)
T 3ieg_A 93 DFKKVLKS--NPSEQEEKEAESQLVKAD------------------------EMQRLRSQALDAFDGADYTAAITFLDKI 146 (359)
T ss_dssp HHHHHHTS--CCCHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhc--CCcccChHHHHHHHHHHH------------------------HHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999875 44 2221111111000 0112344567889999999999999999
Q ss_pred HHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 037477 400 KNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADAD 479 (639)
Q Consensus 400 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 479 (639)
.+.. +.+...+..+...+...|++++|...++++.+... .+..++..+...|...|++++|...+++..+.. +.+..
T Consensus 147 ~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~ 223 (359)
T 3ieg_A 147 LEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKR 223 (359)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchH
Confidence 8775 45778899999999999999999999999998653 378899999999999999999999999999864 33344
Q ss_pred HHH------------HHHHHHHcCCChhHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 037477 480 LLD------------VLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQ--ATFKTLIEKLLGARRLEEAMNLLRLMKKQNY 545 (639)
Q Consensus 480 ~~~------------~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 545 (639)
.+. .+...+.+.|++++|...+++..+...-.+.. ..+..+...+.+.|++++|.+.+++..+.
T Consensus 224 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-- 301 (359)
T 3ieg_A 224 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-- 301 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--
Confidence 333 23566899999999999999998863221111 23556778899999999999999999874
Q ss_pred CCCh-HhH---HHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 037477 546 PPFP-EPF---VQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNE 593 (639)
Q Consensus 546 ~p~~-~~~---~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 593 (639)
.|+. ..+ ..++...|++++|...|++..+..|.+...+..+..++...
T Consensus 302 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 302 EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 3432 222 33446889999999999999999999999988887776543
No 17
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=8.6e-17 Score=158.60 Aligned_cols=347 Identities=12% Similarity=0.129 Sum_probs=182.5
Q ss_pred CCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHH
Q 037477 106 DNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAA 185 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~ 185 (639)
.|++++|.++++.+.. | .+|..|..++.+.|++++|++.|.+. +|..+|..++.++...|+++++.
T Consensus 16 ~~~ld~A~~fae~~~~-----~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi- 81 (449)
T 1b89_A 16 IGNLDRAYEFAERCNE-----P--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV- 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhCCC-----h--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH-
Confidence 5889999999999954 4 49999999999999999999999652 57789999998888877666543
Q ss_pred HHHHHHHHhhhccchhHHHHHHHHHhcCCchHHHHHHHhhccCcCCHHHHHHHHHHhccChHHHHHHHHHHhccCCCCCC
Q 037477 186 LNQFHDGMVKEIAMDNVAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKHN 265 (639)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p~ 265 (639)
.+++...+ ..++
T Consensus 82 -----------------------------------------------------------------~yl~~ark---~~~~ 93 (449)
T 1b89_A 82 -----------------------------------------------------------------KYLQMARK---KARE 93 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------------------------------------------------------------HHHHHHHH---hCcc
Confidence 33332221 1455
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 037477 266 TITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRS 345 (639)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~ 345 (639)
..+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|..+|..+.
T Consensus 94 ~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~----------------- 149 (449)
T 1b89_A 94 SYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS----------------- 149 (449)
T ss_dssp ---------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHTT-----------------
T ss_pred chhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh-----------------
Confidence 7788999999999999999998884 3678899999999999999999999999772
Q ss_pred HhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHH
Q 037477 346 ISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFE 425 (639)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 425 (639)
.|..++.++.+.|++++|.+.+..+ .++.+|..++.+|+..|+++
T Consensus 150 -----------------------------n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~ 194 (449)
T 1b89_A 150 -----------------------------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFR 194 (449)
T ss_dssp -----------------------------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHH
T ss_pred -----------------------------hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHH
Confidence 2788999999999999999999988 27899999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC--CChhHHHHHHHH
Q 037477 426 DACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQ--KRVNGAYKLLVE 503 (639)
Q Consensus 426 ~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~ 503 (639)
.|......+ ...+.-...++..|.+.|.+++|..+++..+... +.....|+-|--.|++- +++.+.++.|.
T Consensus 195 lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~- 267 (449)
T 1b89_A 195 LAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW- 267 (449)
T ss_dssp HHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS-
T ss_pred HHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-
Confidence 996655442 2344446679999999999999999999998765 66788888887778765 34445555443
Q ss_pred HHHhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChHhHHHHHhhcCCHHHHHHHHHHhhcCC
Q 037477 504 MIEKVRLRP------WQATFKTLIEKLLGARRLEEAMNLLRLMKKQ-NYPPFPEPFVQYISKFGTVEDASEFLKALSVKE 576 (639)
Q Consensus 504 m~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~g~~~~a~~~~~~~~~~~ 576 (639)
.+-++.| +...|..++-.|.+.++++.|.. .|.++ ...-+...|..++.+-.+.|--.+...-..+.
T Consensus 268 --~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~---tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~- 341 (449)
T 1b89_A 268 --SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII---TMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF- 341 (449)
T ss_dssp --TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH---HHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH-
T ss_pred --HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH---HHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc-
Confidence 2223322 24478888888999999998876 34443 34456778889998888888766665555543
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCc
Q 037477 577 YPSSAAYLQVFESFFNEGRHYEAKDLLYKCPH 608 (639)
Q Consensus 577 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 608 (639)
.+...+.|+.++...=+...+.+++++...
T Consensus 342 --~p~~l~~ll~~l~~~ld~~r~v~~~~~~~~ 371 (449)
T 1b89_A 342 --KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQ 371 (449)
T ss_dssp --CGGGHHHHHHHHGGGCCHHHHHHHHHHTTC
T ss_pred --CHHHHHHHHHHHHhccCcHHHHHHHHHcCC
Confidence 455577888888888888888888888643
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.76 E-value=1.1e-15 Score=151.13 Aligned_cols=290 Identities=9% Similarity=0.026 Sum_probs=174.3
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHH
Q 037477 262 YKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSL 341 (639)
Q Consensus 262 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ 341 (639)
.+.+...+..+...+...|++++|.++|+++.+.. +.+...+..++..+...|++++|..+++++.+.
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----------- 85 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDL----------- 85 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh-----------
Confidence 34455556666666666677777777777766553 334445555666666667777777666665431
Q ss_pred HHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC-ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 037477 342 LLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLG-RFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCK 420 (639)
Q Consensus 342 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 420 (639)
.+.+...+..+...+...| ++++|.+.|++..+.. +.+...|..+...+..
T Consensus 86 ---------------------------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 137 (330)
T 3hym_B 86 ---------------------------YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAV 137 (330)
T ss_dssp ---------------------------CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHH
T ss_pred ---------------------------CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHH
Confidence 0123445666666666777 6777777777766553 3345566666777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHH
Q 037477 421 AGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKL 500 (639)
Q Consensus 421 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 500 (639)
.|++++|...|+++.+.... +...+..+...|...|++++|.+.+++..+.. +.+...+..+...|...|++++|...
T Consensus 138 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 215 (330)
T 3hym_B 138 ESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKW 215 (330)
T ss_dssp HTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHH
Confidence 77777777777776654422 34555556666777777777777777766653 33556666666677777777777777
Q ss_pred HHHHHHhCC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-Hh---HHHHHhhcCCHHHHHHHH
Q 037477 501 LVEMIEKVR-------LRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFP-EP---FVQYISKFGTVEDASEFL 569 (639)
Q Consensus 501 ~~~m~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~---~~~ll~~~g~~~~a~~~~ 569 (639)
|++..+... ...+...|..+...|...|++++|.+.+++..+.. |+. .. +..++...|+.++|...+
T Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~ 293 (330)
T 3hym_B 216 FLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI--PQNASTYSAIGYIHSLMGNFENAVDYF 293 (330)
T ss_dssp HHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHhccHHHHHHHH
Confidence 766655311 02224466666666667777777777776666532 221 11 222334556666666666
Q ss_pred HHhhcCCCCCHHHHHHHHHHH-HhcCC
Q 037477 570 KALSVKEYPSSAAYLQVFESF-FNEGR 595 (639)
Q Consensus 570 ~~~~~~~~~~~~~~~~l~~~~-~~~g~ 595 (639)
++..+..|.+...+..+..++ ...|+
T Consensus 294 ~~al~~~p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 294 HTALGLRRDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HTTTTTCSCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhCc
Confidence 666666666666666666666 33444
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.76 E-value=1.2e-15 Score=150.85 Aligned_cols=281 Identities=11% Similarity=0.029 Sum_probs=210.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHH
Q 037477 298 EMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYD 377 (639)
Q Consensus 298 ~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (639)
+.+...+..+...+...|++++|+++|+++.+.. | .+...+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p------------------------------------~~~~~~~ 60 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--P------------------------------------FHASCLP 60 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T------------------------------------TCTTTHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C------------------------------------CChhhHH
Confidence 4456667778888888899999999998876531 1 1223344
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 037477 378 GIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAG-RFEDACNVLDEMEENGCIPDIKTWTILIQGHCAA 456 (639)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 456 (639)
.++.++...|++++|..+++++.+.. +.+...|..+...+...| ++++|...|++..+.... +...|..+...+...
T Consensus 61 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~ 138 (330)
T 3hym_B 61 VHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVE 138 (330)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHc
Confidence 56677778889999999998888764 446677888888888888 899999999988876532 567788888889999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037477 457 NEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNL 536 (639)
Q Consensus 457 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 536 (639)
|++++|...++++.+.. +.+...+..+...|...|++++|...|++..+.. ..+...+..+...+...|++++|...
T Consensus 139 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~ 215 (330)
T 3hym_B 139 SEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA--PEDPFVMHEVGVVAFQNGEWKTAEKW 215 (330)
T ss_dssp TCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcccHHHHHHH
Confidence 99999999999888865 3345666678888888999999999999887642 33467888888888899999999999
Q ss_pred HHHHHhCC----CC---CC-hH---hHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 037477 537 LRLMKKQN----YP---PF-PE---PFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYK 605 (639)
Q Consensus 537 ~~~m~~~~----~~---p~-~~---~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 605 (639)
+++..+.. -. |. .. .+..++...|++++|...+++..+..|.+...|..+..+|.+.|++++|.+.+++
T Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 295 (330)
T 3hym_B 216 FLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHT 295 (330)
T ss_dssp HHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 88877521 00 22 12 2234446789999999999988888788888899999999999999999999988
Q ss_pred CCccccCChhHHHhhh
Q 037477 606 CPHHIRQDSKISLLFG 621 (639)
Q Consensus 606 m~~~~~~~~~~~~l~~ 621 (639)
.....+..+.....++
T Consensus 296 al~~~p~~~~~~~~l~ 311 (330)
T 3hym_B 296 ALGLRRDDTFSVTMLG 311 (330)
T ss_dssp TTTTCSCCHHHHHHHH
T ss_pred HHccCCCchHHHHHHH
Confidence 7555444444444433
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.71 E-value=4.7e-13 Score=141.60 Aligned_cols=74 Identities=9% Similarity=0.145 Sum_probs=55.3
Q ss_pred CCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HhcCchhhH
Q 037477 106 DNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVL-KKAKKASDL 183 (639)
Q Consensus 106 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~-~~~~~~~~~ 183 (639)
.|+++.|..+|+.+.+.. +.+...|...+..+.+.|++++|..+|++..+.. |+...|...+... ...|+.+++
T Consensus 25 ~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a 99 (530)
T 2ooe_A 25 NQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSY 99 (530)
T ss_dssp SSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTH
T ss_pred hCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhH
Confidence 588999999999988743 3567789999999999999999999999988764 6777776666433 234444443
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.69 E-value=2.7e-15 Score=150.93 Aligned_cols=223 Identities=10% Similarity=-0.031 Sum_probs=123.4
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH---------
Q 037477 378 GIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTI--------- 448 (639)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~--------- 448 (639)
.+..+|...|++++|.+.|+++.+.. +.+..++..+...|...|++++|...|+++.+.... +...+..
T Consensus 103 ~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 180 (368)
T 1fch_A 103 YLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAG 180 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC----------
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhc
Confidence 34444444455555555555444432 223444445555555555555555555554443211 1111100
Q ss_pred ------HHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 037477 449 ------LIQGHCAANEVDRALLCFAKMMEKNYDA-DADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLI 521 (639)
Q Consensus 449 ------li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 521 (639)
.+..+...|++++|...++++.+..... +..++..+...|...|++++|...|+++.+.. ..+...|..+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~ 258 (368)
T 1fch_A 181 LGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLG 258 (368)
T ss_dssp -----CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred ccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHH
Confidence 1222235666666666666666543211 35566666666666666666666666665541 12345666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChH-h---HHHHHhhcCCHHHHHHHHHHhhcCCCCC-----------HHHHHHH
Q 037477 522 EKLLGARRLEEAMNLLRLMKKQNYPPFPE-P---FVQYISKFGTVEDASEFLKALSVKEYPS-----------SAAYLQV 586 (639)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~---~~~ll~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~l 586 (639)
..+...|++++|.+.++++.+. .|+.. . +..++...|++++|...|++..+..|.+ ..+|..+
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l 336 (368)
T 1fch_A 259 ATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTL 336 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHH
Confidence 6666666666666666666552 23221 1 1223345566666666666665543333 8899999
Q ss_pred HHHHHhcCCHHHHHHHHhhC
Q 037477 587 FESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 587 ~~~~~~~g~~~~A~~~~~~m 606 (639)
..+|.+.|++++|..++++-
T Consensus 337 ~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 337 RLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHhCChHhHHHhHHHH
Confidence 99999999999999988753
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.67 E-value=5.3e-12 Score=132.05 Aligned_cols=288 Identities=10% Similarity=0.034 Sum_probs=179.6
Q ss_pred cChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cC
Q 037477 244 IYPVKALGFFRWVGEHSGYKHNTITYNGILRVLAR----HESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQK----FR 315 (639)
Q Consensus 244 ~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g 315 (639)
+++++|+..|+...+. -+...+..|...|.. .++.++|.+.|++..+.| +...+..+...|.. .+
T Consensus 129 ~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 201 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQ----GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVER 201 (490)
T ss_dssp CCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCc
Confidence 4566666666666432 145555556555555 556666666666666554 55566666666655 56
Q ss_pred CHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHc----cCChhH
Q 037477 316 MMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTK----LGRFDE 391 (639)
Q Consensus 316 ~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~ 391 (639)
+.++|.+.|+...+.| +...+..+...|.. .+++++
T Consensus 202 ~~~~A~~~~~~a~~~~----------------------------------------~~~a~~~lg~~y~~g~g~~~~~~~ 241 (490)
T 2xm6_A 202 NDAISAQWYRKSATSG----------------------------------------DELGQLHLADMYYFGIGVTQDYTQ 241 (490)
T ss_dssp CHHHHHHHHHHHHHTT----------------------------------------CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CHHHHHHHHHHHHHCC----------------------------------------CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 6666666666555432 22233344444443 577778
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----CCHHHH
Q 037477 392 AEKMMKAMKNAGFEPDNITYSQVIFGLCK----AGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAA-----NEVDRA 462 (639)
Q Consensus 392 A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~-----g~~~~a 462 (639)
|.+.|++..+.| +...+..+...|.. .++.++|...|++..+.| +...+..+...|... ++.++|
T Consensus 242 A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A 315 (490)
T 2xm6_A 242 SRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQA 315 (490)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHH
Confidence 888887777654 44556666666666 777888888888777654 455666677777766 788888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCC---ChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 037477 463 LLCFAKMMEKNYDADADLLDVLINGFLSQK---RVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLG----ARRLEEAMN 535 (639)
Q Consensus 463 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~ 535 (639)
...+++..+.| +...+..|-..|...| ++++|..+|+...+. + +...+..+-..|.. .+++++|.+
T Consensus 316 ~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 388 (490)
T 2xm6_A 316 ISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-G---EKAAQFNLGNALLQGKGVKKDEQQAAI 388 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 88888777765 4556666666666655 677788888777664 2 45566677777776 678888888
Q ss_pred HHHHHHhCCCCCChHhHHHHHhh----cCCHHHHHHHHHHhhcCCC---CCHHHHHHHHHHHH
Q 037477 536 LLRLMKKQNYPPFPEPFVQYISK----FGTVEDASEFLKALSVKEY---PSSAAYLQVFESFF 591 (639)
Q Consensus 536 ~~~~m~~~~~~p~~~~~~~ll~~----~g~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~ 591 (639)
.|++..+.+.......+..++.. .++.++|..+|++..+..+ .+......+...+.
T Consensus 389 ~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~ 451 (490)
T 2xm6_A 389 WMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA 451 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH
Confidence 88887776532222223333443 6788888888887776642 24444444444433
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.67 E-value=1.8e-14 Score=144.93 Aligned_cols=284 Identities=8% Similarity=-0.045 Sum_probs=169.0
Q ss_pred cChHHHHH-HHHHHhccCCCCC--CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037477 244 IYPVKALG-FFRWVGEHSGYKH--NTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDA 320 (639)
Q Consensus 244 ~~~~~A~~-~f~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 320 (639)
+++++|+. .|+...+...-.| +...+..+...+.+.|++++|...|+++.+.. +.+..+|..+...|...|++++|
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHH
Confidence 44555665 5654432211112 34556677777777888888888888777764 44667777777777888888888
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 037477 321 VKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMK 400 (639)
Q Consensus 321 ~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 400 (639)
+..|+.+.+.. | .+..++..+..+|...|++++|.+.++++.
T Consensus 118 ~~~~~~al~~~--~------------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 159 (368)
T 1fch_A 118 ISALRRCLELK--P------------------------------------DNQTALMALAVSFTNESLQRQACEILRDWL 159 (368)
T ss_dssp HHHHHHHHHHC--T------------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--C------------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 87777765421 1 122345556666667777777777777766
Q ss_pred HCCCCCCHHhHHH---------------HHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 037477 401 NAGFEPDNITYSQ---------------VIFGLCKAGRFEDACNVLDEMEENGCIP-DIKTWTILIQGHCAANEVDRALL 464 (639)
Q Consensus 401 ~~g~~~~~~~~~~---------------li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~ 464 (639)
+... .+...+.. .+..+...|++++|...|+++.+..... +..++..+...|...|++++|..
T Consensus 160 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~ 238 (368)
T 1fch_A 160 RYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVD 238 (368)
T ss_dssp HTST-TTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhCc-CcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 6531 12222211 1333336777777777777776643221 36667777777777777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 037477 465 CFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQN 544 (639)
Q Consensus 465 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 544 (639)
.++++.+.. +.+..++..+...|...|++++|...|+++.+.. ..+...|..+...|.+.|++++|.+.++++.+..
T Consensus 239 ~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 315 (368)
T 1fch_A 239 CFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ--PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 315 (368)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 777776653 3356667777777777777777777777766541 2235566777777777777777777777666421
Q ss_pred CCC---------C-hHh---HHHHHhhcCCHHHHHHHHH
Q 037477 545 YPP---------F-PEP---FVQYISKFGTVEDASEFLK 570 (639)
Q Consensus 545 ~~p---------~-~~~---~~~ll~~~g~~~~a~~~~~ 570 (639)
... . ... +..++...|+.++|..+++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 316 RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 100 0 122 2233356677777766654
No 24
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.66 E-value=4.6e-11 Score=131.60 Aligned_cols=451 Identities=13% Similarity=0.137 Sum_probs=311.1
Q ss_pred CCCHHHHHHHHHhcCCChHHHHHHHHHHhhc-CCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCC--CCCHHHHH
Q 037477 92 KLTHESVVYVLRKLDNDPEKASAFFNWVCDK-KQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHC--YIEEETYL 168 (639)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~--~~~~~t~~ 168 (639)
+-++++-..+|.. .+ +.=+++.+|.... ..-.-++.--...++.|+..|.+.+|++++++..-.+- .-+...-+
T Consensus 950 r~d~~lW~~vl~~--~n-~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~Lqn 1026 (1630)
T 1xi4_A 950 RKDPELWGSVLLE--SN-PYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQN 1026 (1630)
T ss_pred hcCHHHHHHHhcC--Cc-HHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHH
Confidence 3455555555543 11 2234566664331 11224555556778899999999999999999984421 12234555
Q ss_pred HHHHHHHhcCchhhHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCchHHHHHHHhhccCcCCHHHHHHHHHHhccChHH
Q 037477 169 SILGVLKKAKKASDLAALNQFHDGMVKEIAMDNVAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVK 248 (639)
Q Consensus 169 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 248 (639)
.++.+..+.. ...+.+.....-+ .....+-.++...|..+++...+++.+ .+.....++-+.-+.+++
T Consensus 1027 lLi~tAIkaD----~~Rv~eyI~kLd~-----~d~~eIA~Iai~lglyEEAf~IYkKa~---~~~~A~~VLie~i~nldr 1094 (1630)
T 1xi4_A 1027 LLILTAIKAD----RTRVMEYINRLDN-----YDAPDIANIAISNELFEEAFAIFRKFD---VNTSAVQVLIEHIGNLDR 1094 (1630)
T ss_pred HHHHHHHHhC----hhhHHHHHHHhhh-----ccHHHHHHHHHhCCCHHHHHHHHHHcC---CHHHHHHHHHHHHhhHHH
Confidence 5776666662 2222222222221 113345667777889999999999975 222223444434577899
Q ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 037477 249 ALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMM 328 (639)
Q Consensus 249 A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 328 (639)
|.++.+++. +..+|..+..++.+.|++++|.+.|.+. -|...|..++.+|.+.|++++|.+.|....
T Consensus 1095 AiE~Aervn-------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mAr 1161 (1630)
T 1xi4_A 1095 AYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMAR 1161 (1630)
T ss_pred HHHHHHhcC-------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999998763 4778999999999999999999999663 388899999999999999999999999877
Q ss_pred cCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH
Q 037477 329 DGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDN 408 (639)
Q Consensus 329 ~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 408 (639)
+.. ++....+.+.-+|++.+. .+..... . ..++...|..+...|...|++++|..+|...
T Consensus 1162 k~~--~e~~Idt~LafaYAKl~r--leele~f----I---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------- 1221 (1630)
T 1xi4_A 1162 KKA--RESYVETELIFALAKTNR--LAELEEF----I---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------- 1221 (1630)
T ss_pred hhc--ccccccHHHHHHHHhhcC--HHHHHHH----H---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------
Confidence 654 333333347777777643 3332222 2 2345556777999999999999999999985
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037477 409 ITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGF 488 (639)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (639)
..|..+..+|++.|++++|.+.+++. .+..+|..+-.+|...|++..|...... +..+...+..++..|
T Consensus 1222 ~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yY 1290 (1630)
T 1xi4_A 1222 SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYY 1290 (1630)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHH
Confidence 37999999999999999999999876 3668999999999999999999886653 344667788999999
Q ss_pred HcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCC------C---hHhHHHHHh
Q 037477 489 LSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLG--ARRLEEAMNLLRLMKKQNYPP------F---PEPFVQYIS 557 (639)
Q Consensus 489 ~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~p------~---~~~~~~ll~ 557 (639)
.+.|.+++|+.+++...... .-....|+-+...|++ -++..++.+.|..-. .++| + +.-+.-++.
T Consensus 1291 e~~G~feEAI~LlE~aL~Le--raH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~ 1366 (1630)
T 1xi4_A 1291 QDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYD 1366 (1630)
T ss_pred HHcCCHHHHHHHHHHHhccC--hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHH
Confidence 99999999999998765431 2223455555555555 344555555544222 2322 1 233455567
Q ss_pred hcCCHHHHHH--------HHH-----HhhcCCCCCHHHHHHHHHHHHhcC---------------CHHHHHHHHhhC
Q 037477 558 KFGTVEDASE--------FLK-----ALSVKEYPSSAAYLQVFESFFNEG---------------RHYEAKDLLYKC 606 (639)
Q Consensus 558 ~~g~~~~a~~--------~~~-----~~~~~~~~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~m 606 (639)
+.|+++.|.. .|+ .... ...+++.|...+..|...+ +++.+.+++++.
T Consensus 1367 ~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~-kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~~ 1442 (1630)
T 1xi4_A 1367 KYEEYDNAIITMMNHPTDAWKEGQFKDIIT-KVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKV 1442 (1630)
T ss_pred hcccHHHHHHHHHhccHhhhhhHHHHHHhc-ccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHHc
Confidence 8899998872 222 2221 4568889988888888877 888888888863
No 25
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.66 E-value=4e-11 Score=132.10 Aligned_cols=305 Identities=12% Similarity=0.066 Sum_probs=196.2
Q ss_pred ccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037477 243 RIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVK 322 (639)
Q Consensus 243 ~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 322 (639)
.+.+++|..+|++.. -.....+.++. ..|++++|.++.++.. +..+|..+..++...|++++|++
T Consensus 1062 lglyEEAf~IYkKa~------~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFD------VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred CCCHHHHHHHHHHcC------CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHH
Confidence 456666777776541 12222233332 4566777766666442 46677777777777778888777
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHC
Q 037477 323 LFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNA 402 (639)
Q Consensus 323 l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 402 (639)
.|... -|...|.-+..++.+.+ +.+.+.+.+....+.. ++....+.++.+|++.+++++...+. +
T Consensus 1127 sYiKA------dD~say~eVa~~~~~lG--kyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~- 1191 (1630)
T 1xi4_A 1127 SYIKA------DDPSSYMEVVQAANTSG--NWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N- 1191 (1630)
T ss_pred HHHhc------CChHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h-
Confidence 77554 35556666666666655 4556666665544433 22222334777777777776543332 1
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 037477 403 GFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLD 482 (639)
Q Consensus 403 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 482 (639)
.++...|..+...|...|++++|...|... ..|..+...|++.|++++|.+.+++. .+..+|.
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWk 1254 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWK 1254 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHH
Confidence 345556666777777777777777777763 36777777777777777777777665 2556777
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-HhH---HHHHhh
Q 037477 483 VLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFP-EPF---VQYISK 558 (639)
Q Consensus 483 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~---~~ll~~ 558 (639)
.+-.+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++.... +.+.. ..| ..++++
T Consensus 1255 ev~~acve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1255 EVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHHHhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHh
Confidence 7777777777777777665432 22445778899999999999999999987764 33332 222 223333
Q ss_pred --cCCHHHHHHHHHHhhcCCC-----CCHHHHHHHHHHHHhcCCHHHHHHH
Q 037477 559 --FGTVEDASEFLKALSVKEY-----PSSAAYLQVFESFFNEGRHYEAKDL 602 (639)
Q Consensus 559 --~g~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~ 602 (639)
-+++.++.++|..-....+ .+...|.-++..|.+.|+++.|...
T Consensus 1327 y~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1327 FKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred CCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 3566666666654443322 4678899999999999999999843
No 26
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.66 E-value=3.5e-12 Score=134.86 Aligned_cols=409 Identities=7% Similarity=0.018 Sum_probs=239.5
Q ss_pred CChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhhccchhHHHHH
Q 037477 127 PSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAALNQFHDGMVKEIAMDNVAKTL 206 (639)
Q Consensus 127 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 206 (639)
-+...|..++. +.+.|++++|..+|+++.+.- +-+...|...+..+.+.|+.+++ ..+++..+...+...++..+
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a---~~~~~ral~~~p~~~lw~~~ 85 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKV---EKLFQRCLMKVLHIDLWKCY 85 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHH---HHHHHHHTTTCCCHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHH---HHHHHHHHhcCCChHHHHHH
Confidence 47889999998 478899999999999998763 44667788888888887765544 34455554433221111111
Q ss_pred HHHHhcCCchHHHHHHHhhccCcCCHHHHHHHHHHhccChHHHH----HHHHHHhccCCCCC-CHHHHHHHHHHHHc---
Q 037477 207 VDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVKAL----GFFRWVGEHSGYKH-NTITYNGILRVLAR--- 278 (639)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~----~~f~~~~~~~~~~p-~~~~~~~li~~~~~--- 278 (639)
+. .+....++.+.|. ++|+......|..| +...|...+....+
T Consensus 86 ~~-----------------------------~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~ 136 (530)
T 2ooe_A 86 LS-----------------------------YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEA 136 (530)
T ss_dssp HH-----------------------------HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCC
T ss_pred HH-----------------------------HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCC
Confidence 11 0011112223333 35555544444443 34555555554443
Q ss_pred ------CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHhhcCCCCCCHHHH
Q 037477 279 ------HESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQK-------------FRMMEDAVKLFEFMMDGPYKPSVQDC 339 (639)
Q Consensus 279 ------~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-------------~g~~~~a~~l~~~m~~~g~~p~~~~~ 339 (639)
.|+++.|.++|++..+....+....|......... .++++.|..++..+.
T Consensus 137 ~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~----------- 205 (530)
T 2ooe_A 137 VGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYE----------- 205 (530)
T ss_dssp CSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHH-----------
T ss_pred cccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHH-----------
Confidence 45666666666666552111111223222221100 111222222222110
Q ss_pred HHHHHHHhhcCCCchhHHHHHHHHHHhc--CCCCC--------hhhHHHHHHHHHc----cCCh----hHHHHHHHHHHH
Q 037477 340 SLLLRSISSINNPDLGLVFRVANKYESL--GNSLS--------KSVYDGIHRALTK----LGRF----DEAEKMMKAMKN 401 (639)
Q Consensus 340 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--------~~~~~~li~~~~~----~g~~----~~A~~~~~~m~~ 401 (639)
.+...+... ...|+ ...|...+..... .++. ..+..+|++...
T Consensus 206 -------------------~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~ 266 (530)
T 2ooe_A 206 -------------------TVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLL 266 (530)
T ss_dssp -------------------HHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHH
T ss_pred -------------------HHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHH
Confidence 000001000 01221 1234444332222 1232 366777887776
Q ss_pred CCCCCCHHhHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 037477 402 AGFEPDNITYSQVIFGLCK-------AGRFE-------DACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFA 467 (639)
Q Consensus 402 ~g~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 467 (639)
.. +.+...|......+.+ .|+++ +|..+|++..+.-..-+...|..++..+.+.|++++|..+|+
T Consensus 267 ~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~ 345 (530)
T 2ooe_A 267 VL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYN 345 (530)
T ss_dssp HH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 53 4467778877777765 68876 888888888752122357788888888888999999999999
Q ss_pred HHHHcCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCC
Q 037477 468 KMMEKNYDAD--ADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIE-KLLGARRLEEAMNLLRLMKKQN 544 (639)
Q Consensus 468 ~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~ 544 (639)
++++. .|+ ...|..++..+.+.|++++|..+|+...+.... +...|..... .+...|+.++|..+|+...+.
T Consensus 346 ~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~--~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~- 420 (530)
T 2ooe_A 346 RLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART--RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK- 420 (530)
T ss_dssp HHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC--CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH-
T ss_pred HHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC--chHHHHHHHHHHHHHcCChhHHHHHHHHHHHH-
Confidence 98885 343 247888888888888899999999988764221 2222222221 133578899999999988763
Q ss_pred CCCCh-Hh---HHHHHhhcCCHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 545 YPPFP-EP---FVQYISKFGTVEDASEFLKALSVKEYPS----SAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 545 ~~p~~-~~---~~~ll~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
.|+. .. +..++.+.|+.++|..+|++.....+.+ ...|...+......|+.+.+.++.+++
T Consensus 421 -~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 421 -YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp -HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2432 22 3334457799999999999888764333 447888888888889999998888775
No 27
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.66 E-value=7.1e-12 Score=131.10 Aligned_cols=340 Identities=11% Similarity=0.012 Sum_probs=272.0
Q ss_pred ccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c
Q 037477 243 RIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLAR----HESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQK----F 314 (639)
Q Consensus 243 ~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~ 314 (639)
.++.++|+..|+...+. -+...+..|-..|.. .++.++|.+.|++..+.| +...+..+...|.. .
T Consensus 56 ~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 128 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVK 128 (490)
T ss_dssp CCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CcCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 46788899999888643 367788888888888 899999999999998876 67778888888888 7
Q ss_pred CCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcC--CCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHc----cCC
Q 037477 315 RMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSIN--NPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTK----LGR 388 (639)
Q Consensus 315 g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~ 388 (639)
+++++|+..|+...+.| +...+..+-..+.... ..+...+...+....+.+ +...+..+...|.. .++
T Consensus 129 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~ 202 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERN 202 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcC
Confidence 89999999999988765 4555555555555422 456778888887777654 56777788888887 899
Q ss_pred hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHH
Q 037477 389 FDEAEKMMKAMKNAGFEPDNITYSQVIFGLCK----AGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCA----ANEVD 460 (639)
Q Consensus 389 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~----~g~~~ 460 (639)
.++|.+.|++..+.| +...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .++.+
T Consensus 203 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~ 276 (490)
T 2xm6_A 203 DAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPL 276 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHH
Confidence 999999999998865 56778888888886 899999999999998864 56777778888888 89999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-----CChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHH
Q 037477 461 RALLCFAKMMEKNYDADADLLDVLINGFLSQ-----KRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGAR---RLEE 532 (639)
Q Consensus 461 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g---~~~~ 532 (639)
+|.+.|++..+.| +...+..|-..|... +++++|...|+...+. + +...+..+-..|...| +.++
T Consensus 277 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~~g~~~~~~~ 349 (490)
T 2xm6_A 277 KALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAIYFRLGSEEEHKK 349 (490)
T ss_dssp HHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHSCCHHHHHH
T ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHHHHhCCCcccHHH
Confidence 9999999998876 566777788888887 8999999999999875 3 4557777777777766 7899
Q ss_pred HHHHHHHHHhCCCCCChHhHHHHHhh----cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHh
Q 037477 533 AMNLLRLMKKQNYPPFPEPFVQYISK----FGTVEDASEFLKALSVKEYPSSAAYLQVFESFFN----EGRHYEAKDLLY 604 (639)
Q Consensus 533 A~~~~~~m~~~~~~p~~~~~~~ll~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 604 (639)
|++.+++..+.|...-...+..++.. .++.++|..+|++..+. .++..+..|...|.. .+++++|.+.++
T Consensus 350 A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 427 (490)
T 2xm6_A 350 AVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFD 427 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99999999987543323334444555 68999999999998875 368889999999998 899999999999
Q ss_pred hCCccc
Q 037477 605 KCPHHI 610 (639)
Q Consensus 605 ~m~~~~ 610 (639)
+.....
T Consensus 428 ~A~~~~ 433 (490)
T 2xm6_A 428 TASTND 433 (490)
T ss_dssp HHHHHH
T ss_pred HHHHCC
Confidence 964443
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.66 E-value=1.7e-16 Score=156.46 Aligned_cols=219 Identities=13% Similarity=0.157 Sum_probs=47.1
Q ss_pred ccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037477 243 RIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVK 322 (639)
Q Consensus 243 ~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 322 (639)
.++.++|.++++++. +..+|..|..++.+.|++++|.+.|.+. +|..+|..++.++...|++++|+.
T Consensus 16 ~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 16 IGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 366788999998873 2349999999999999999999999652 488899999999999999999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHC
Q 037477 323 LFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNA 402 (639)
Q Consensus 323 l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 402 (639)
+++...+. .+++.+.+.++.+|.+.++ ...+.+++ ..|+..+|..+...|...|++++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~--l~e~e~f~-------~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNR--LAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp ----------------------------C--HHHHTTTT-------TCC----------------CTTTHHHHHHHT---
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCC--HHHHHHHH-------cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 77766553 3334445555555544431 22221111 1233344555555555555555555555443
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 037477 403 GFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLD 482 (639)
Q Consensus 403 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 482 (639)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|...... +..+..-..
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~ 211 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELE 211 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHH
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHH
Confidence 13455555555555555555555444 1344555555555555555555332222 111222233
Q ss_pred HHHHHHHcCCChhHHHHHHHHHH
Q 037477 483 VLINGFLSQKRVNGAYKLLVEMI 505 (639)
Q Consensus 483 ~li~~~~~~g~~~~A~~~~~~m~ 505 (639)
.++..|.+.|.+++|..+++...
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHh
Confidence 34444555555555555554443
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.65 E-value=3.1e-14 Score=137.48 Aligned_cols=269 Identities=12% Similarity=0.020 Sum_probs=188.6
Q ss_pred ccChHHHHHHHHHHhccCCCCCCH--HHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037477 243 RIYPVKALGFFRWVGEHSGYKHNT--ITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDA 320 (639)
Q Consensus 243 ~~~~~~A~~~f~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 320 (639)
.|.+..|+..++... ...|+. ...-.+..+|...|+++.|...++. .-+|+..++..+...+...|+.++|
T Consensus 12 ~g~y~~ai~~~~~~~---~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 12 IGSYQQCINEAQRVK---PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp TTCHHHHHHHHHHSC---CCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHhcc---cCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 477778888777652 223432 3555677888888888888876644 2356777888888888888888888
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 037477 321 VKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMK 400 (639)
Q Consensus 321 ~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 400 (639)
++.++++...+..|+... .+..+..++...|++++|++.+++
T Consensus 85 ~~~l~~ll~~~~~P~~~~------------------------------------~~~~la~~~~~~g~~~~Al~~l~~-- 126 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTT------------------------------------FLLMAASIYFYDQNPDAALRTLHQ-- 126 (291)
T ss_dssp HHHHHHHHHSCCCCSCHH------------------------------------HHHHHHHHHHHTTCHHHHHHHHTT--
T ss_pred HHHHHHHHhcccCCCCHH------------------------------------HHHHHHHHHHHCCCHHHHHHHHhC--
Confidence 888888876554454332 233355667788888888888876
Q ss_pred HCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 037477 401 NAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTW---TILIQGHCAANEVDRALLCFAKMMEKNYDAD 477 (639)
Q Consensus 401 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~---~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 477 (639)
+.+...+..+...|.+.|++++|...|+++.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+
T Consensus 127 ----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~ 199 (291)
T 3mkr_A 127 ----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPT 199 (291)
T ss_dssp ----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCC
T ss_pred ----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCc
Confidence 4567778888888888888888888888887764 443211 122233344578888888888888873 557
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhCCCCCChHhHHHHH
Q 037477 478 ADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEE-AMNLLRLMKKQNYPPFPEPFVQYI 556 (639)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~~~p~~~~~~~ll 556 (639)
...++.+..++.+.|++++|...|++..+... -+..++..++..+...|+.++ +.++++++.+ ..|+......+.
T Consensus 200 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p--~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~~~d~~ 275 (291)
T 3mkr_A 200 LLLLNGQAACHMAQGRWEAAEGVLQEALDKDS--GHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPFIKEYR 275 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChHHHHHH
Confidence 78888888888888888888888888777522 245577777777888888765 5678887776 457766666665
Q ss_pred hhcCCHHHHHH
Q 037477 557 SKFGTVEDASE 567 (639)
Q Consensus 557 ~~~g~~~~a~~ 567 (639)
.+.+.++++..
T Consensus 276 ~~~~~fd~~~~ 286 (291)
T 3mkr_A 276 AKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.63 E-value=2.6e-13 Score=133.70 Aligned_cols=265 Identities=12% Similarity=0.031 Sum_probs=205.2
Q ss_pred ccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037477 243 RIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVK 322 (639)
Q Consensus 243 ~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 322 (639)
.+++++|+.+|+.+.+.. +.+..+|..+...+.+.|++++|.+.++++.+.. +.+..++..+...|...|++++|++
T Consensus 34 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 110 (327)
T 3cv0_A 34 LANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALA 110 (327)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 578899999999886432 3477889999999999999999999999998874 4578889999999999999999999
Q ss_pred HHHHhhcCCCCCCHH-HHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHH-HH-HHHccCChhHHHHHHHHH
Q 037477 323 LFEFMMDGPYKPSVQ-DCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGI-HR-ALTKLGRFDEAEKMMKAM 399 (639)
Q Consensus 323 l~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~~~A~~~~~~m 399 (639)
.++.+.+.. |+.. .+..+... .++......+ .. .+...|++++|.+.++++
T Consensus 111 ~~~~~~~~~--~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 164 (327)
T 3cv0_A 111 SLRAWLLSQ--PQYEQLGSVNLQA------------------------DVDIDDLNVQSEDFFFAAPNEYRECRTLLHAA 164 (327)
T ss_dssp HHHHHHHTS--TTTTTC--------------------------------------------CCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CccHHHHHHHhHH------------------------HHHHHHHHHHHHhHHHHHcccHHHHHHHHHHH
Confidence 999987652 2211 11111000 0011111112 12 367788999999999999
Q ss_pred HHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 037477 400 KNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADAD 479 (639)
Q Consensus 400 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 479 (639)
.+.. +.+...+..+...|...|++++|...++++.+... .+..+|..+...+...|++++|...++++.+.. +.+..
T Consensus 165 ~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~ 241 (327)
T 3cv0_A 165 LEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVR 241 (327)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHH
Confidence 8775 44778899999999999999999999999987653 367889999999999999999999999998875 44678
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037477 480 LLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRP-----------WQATFKTLIEKLLGARRLEEAMNLLRLM 540 (639)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m 540 (639)
.+..+...|...|++++|...|++..+... .. +...|..+..++.+.|+.++|..++++.
T Consensus 242 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 242 VMYNMAVSYSNMSQYDLAAKQLVRAIYMQV-GGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHT-TSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 888999999999999999999998877521 11 3668888999999999999999988654
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.63 E-value=1e-13 Score=133.74 Aligned_cols=158 Identities=15% Similarity=0.097 Sum_probs=73.7
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037477 375 VYDGIHRALTKLGRFDEAEKMMKAMKNAGFEP-DNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGH 453 (639)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~ 453 (639)
++..+...+...|+.++|.+.++++...+..| +...+..+...+...|++++|++.+++ ..+...+..++..|
T Consensus 67 a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~ 140 (291)
T 3mkr_A 67 AVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQIL 140 (291)
T ss_dssp HHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHH
Confidence 34444445555555555555555554443323 233333444455555555555555544 13444555555555
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 037477 454 CAANEVDRALLCFAKMMEKNYDADADLL---DVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRL 530 (639)
Q Consensus 454 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 530 (639)
.+.|++++|.+.++++.+.. |+.... ..++..+...|++++|..+|+++.+.. ..+...|+.+..++.+.|++
T Consensus 141 ~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~ 216 (291)
T 3mkr_A 141 LKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC--SPTLLLLNGQAACHMAQGRW 216 (291)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHTTCH
T ss_pred HHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCH
Confidence 55555555555555555442 221111 112222333455555555555555431 22344455555555555555
Q ss_pred HHHHHHHHHHHh
Q 037477 531 EEAMNLLRLMKK 542 (639)
Q Consensus 531 ~~A~~~~~~m~~ 542 (639)
++|.+.+++..+
T Consensus 217 ~eA~~~l~~al~ 228 (291)
T 3mkr_A 217 EAAEGVLQEALD 228 (291)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
No 32
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.63 E-value=1.1e-12 Score=136.59 Aligned_cols=211 Identities=12% Similarity=-0.049 Sum_probs=93.8
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----------
Q 037477 387 GRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAA---------- 456 (639)
Q Consensus 387 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~---------- 456 (639)
|+.++|.+.+++..... +.+...+..+...|...|++++|...|++..+.... +..++..+...|...
T Consensus 227 ~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~~~~~~~~ 304 (472)
T 4g1t_A 227 EEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVFQVMNLREN 304 (472)
T ss_dssp ---CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 34455555555554432 334444555555555555555555555555543321 334444444444321
Q ss_pred ---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCH--HHHHHHHH-HH
Q 037477 457 ---------NEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQ--ATFKTLIE-KL 524 (639)
Q Consensus 457 ---------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~--~~~~~li~-~~ 524 (639)
+..+.|...+++..+.. +.+...+..+...|...|++++|...|++..+. ...|.. ..+..+.. ..
T Consensus 305 ~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~ 382 (472)
T 4g1t_A 305 GMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQL 382 (472)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHH
Confidence 11334444444444432 222334444555555555555555555555443 111110 01111111 12
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHh
Q 037477 525 LGARRLEEAMNLLRLMKKQNYPPFPEPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLY 604 (639)
Q Consensus 525 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 604 (639)
...|+.++|++.+++..+ +.|+...... ..+.+..++++.....|.++.+|..+..+|...|++++|++.|+
T Consensus 383 ~~~~~~~~Ai~~y~kal~--i~~~~~~~~~------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~ 454 (472)
T 4g1t_A 383 YQMKCEDKAIHHFIEGVK--INQKSREKEK------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSE 454 (472)
T ss_dssp HTSSCHHHHHHHHHHHHH--SCCCCHHHHH------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------
T ss_pred HHCCCHHHHHHHHHHHHh--cCcccHHHHH------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344555555555555544 2333221111 12223334444444567888999999999999999999999999
Q ss_pred hCCcc
Q 037477 605 KCPHH 609 (639)
Q Consensus 605 ~m~~~ 609 (639)
+..+.
T Consensus 455 kALe~ 459 (472)
T 4g1t_A 455 RGLES 459 (472)
T ss_dssp -----
T ss_pred HHHhc
Confidence 96443
No 33
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.63 E-value=5.9e-14 Score=140.99 Aligned_cols=126 Identities=9% Similarity=0.057 Sum_probs=58.4
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 037477 379 IHRALTKLGRFDEAEKMMKAMKNAGFE-PDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAAN 457 (639)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g 457 (639)
+...+...|++++|.+.|+++.+.... ++..++..+...|...|++++|...|+++.+... .+..+|..+...|...|
T Consensus 183 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g 261 (365)
T 4eqf_A 183 MSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGD 261 (365)
T ss_dssp ------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC
Confidence 344455555555555555555444211 0344455555555555555555555555544322 13445555555555555
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 037477 458 EVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIE 506 (639)
Q Consensus 458 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (639)
++++|...++++.+.. +.+..++..+..+|.+.|++++|...|++..+
T Consensus 262 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 262 RSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALS 309 (365)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555555555555442 22344455555555555555555555554443
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.62 E-value=9.6e-14 Score=136.82 Aligned_cols=262 Identities=12% Similarity=-0.008 Sum_probs=205.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHH
Q 037477 301 IDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIH 380 (639)
Q Consensus 301 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 380 (639)
...+..+...+...|++++|+.+|+++.+.. | .+...+..+.
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~------------------------------------~~~~~~~~l~ 62 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA--P------------------------------------EREEAWRSLG 62 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T------------------------------------TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--C------------------------------------CCHHHHHHHH
Confidence 3445667777888899999999888876531 1 1334466677
Q ss_pred HHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-----------
Q 037477 381 RALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTIL----------- 449 (639)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l----------- 449 (639)
.++...|++++|.+.++++.+.. +.+...+..+...|...|++++|...++++.+.... +...+..+
T Consensus 63 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 140 (327)
T 3cv0_A 63 LTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLN 140 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHH
Confidence 88889999999999999998874 456788899999999999999999999999876422 22222222
Q ss_pred ---HH-HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 037477 450 ---IQ-GHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLL 525 (639)
Q Consensus 450 ---i~-~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~ 525 (639)
.. .+...|++++|.+.++++.+.. +.+...+..+...|...|++++|...++++.+.. ..+...|..+...+.
T Consensus 141 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~ 217 (327)
T 3cv0_A 141 VQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLA 217 (327)
T ss_dssp -----CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHH
Confidence 22 3677889999999999999875 4478889999999999999999999999998762 235778899999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC-hHhH---HHHHhhcCCHHHHHHHHHHhhcCCCC------------CHHHHHHHHHH
Q 037477 526 GARRLEEAMNLLRLMKKQNYPPF-PEPF---VQYISKFGTVEDASEFLKALSVKEYP------------SSAAYLQVFES 589 (639)
Q Consensus 526 ~~g~~~~A~~~~~~m~~~~~~p~-~~~~---~~ll~~~g~~~~a~~~~~~~~~~~~~------------~~~~~~~l~~~ 589 (639)
..|++++|.+.++++.+.. |+ ...+ ..++...|++++|...+++..+..|. +...|..+..+
T Consensus 218 ~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 295 (327)
T 3cv0_A 218 NGNRPQEALDAYNRALDIN--PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRML 295 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHH
Confidence 9999999999999988743 43 2222 33446889999999999999877655 68899999999
Q ss_pred HHhcCCHHHHHHHHhhCC
Q 037477 590 FFNEGRHYEAKDLLYKCP 607 (639)
Q Consensus 590 ~~~~g~~~~A~~~~~~m~ 607 (639)
|.+.|++++|..++++..
T Consensus 296 ~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 296 LNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHTTCHHHHHHHTTCCS
T ss_pred HHhcCCHHHHHHHHHHHH
Confidence 999999999999998753
No 35
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.61 E-value=5.5e-14 Score=141.19 Aligned_cols=231 Identities=12% Similarity=-0.036 Sum_probs=188.1
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037477 372 SKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQ 451 (639)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~ 451 (639)
+...+..+...+.+.|++++|.+.|+++.+.. +.+...|..+...|...|++++|...|+++.+... .+..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 34457788889999999999999999998875 55788999999999999999999999999988653 36889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCC---------CCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037477 452 GHCAANEVDRALLCFAKMMEKNYD---------ADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIE 522 (639)
Q Consensus 452 ~~~~~g~~~~a~~~~~~m~~~g~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 522 (639)
.|...|++++|...++++.+.... .....+..+...|...|++++|..+|+++.+...-.++...|..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 999999999999999999885311 01233445678899999999999999999987443336889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC-hHhH---HHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 037477 523 KLLGARRLEEAMNLLRLMKKQNYPPF-PEPF---VQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYE 598 (639)
Q Consensus 523 ~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~---~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 598 (639)
.|...|++++|++.++++.+. .|+ ...+ ..++...|++++|...|++..+..|.+..+|..+..+|.+.|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999874 343 3333 3344688999999999999999889999999999999999999999
Q ss_pred HHHHHhhC
Q 037477 599 AKDLLYKC 606 (639)
Q Consensus 599 A~~~~~~m 606 (639)
|.+.+++.
T Consensus 300 A~~~~~~a 307 (365)
T 4eqf_A 300 AVSNFLTA 307 (365)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999985
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.51 E-value=5.4e-12 Score=119.42 Aligned_cols=229 Identities=10% Similarity=0.014 Sum_probs=188.3
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC--CCCCHHHHHHHH
Q 037477 266 TITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGP--YKPSVQDCSLLL 343 (639)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--~~p~~~~~~~ll 343 (639)
...|..+...+...|++++|...|++..+.. .+...|..+...|...|++++|+..++...+.. ..++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------ 76 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK------ 76 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH------
Confidence 4577888889999999999999999999887 788999999999999999999999999876421 000000
Q ss_pred HHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 037477 344 RSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGR 423 (639)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 423 (639)
....++..+...|...|++++|.+.|++..+. .|+. ..+.+.|+
T Consensus 77 ---------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~ 120 (258)
T 3uq3_A 77 ---------------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRN 120 (258)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhH
Confidence 01345777888999999999999999999876 3443 34667788
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 037477 424 FEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVE 503 (639)
Q Consensus 424 ~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 503 (639)
+++|...++++...... +...+..+...+...|++++|...+++..+.. +.+..++..+...|...|++++|...|+.
T Consensus 121 ~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 121 AEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp HHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999999875422 45678888999999999999999999999875 44688899999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 504 MIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 504 m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
..+.. ..+...|..+...+.+.|++++|.+.+++..+
T Consensus 199 al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 199 AIEKD--PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhC--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 98762 23477888889999999999999999998876
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.50 E-value=2.1e-12 Score=122.26 Aligned_cols=219 Identities=13% Similarity=0.089 Sum_probs=183.9
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC----HHHHH
Q 037477 374 SVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCI--PD----IKTWT 447 (639)
Q Consensus 374 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~----~~t~~ 447 (639)
..+..+...+...|++++|.+.|++..+.. .+...|..+..+|...|++++|...+++..+.... ++ ..+|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 356778889999999999999999999887 78889999999999999999999999998764321 22 57899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 037477 448 ILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRP-WQATFKTLIEKLLG 526 (639)
Q Consensus 448 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~ 526 (639)
.+...|...|++++|...+++..+.. |+. ..+.+.|++++|...++.+... .| +...|..+...+..
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYV---NPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHc---CcchHHHHHHHHHHHHH
Confidence 99999999999999999999999864 443 3466678899999999998764 23 35678888899999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC-hHhH---HHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037477 527 ARRLEEAMNLLRLMKKQNYPPF-PEPF---VQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDL 602 (639)
Q Consensus 527 ~g~~~~A~~~~~~m~~~~~~p~-~~~~---~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 602 (639)
.|++++|.+.+++..+.. |+ ...+ ..++...|++++|...+++..+..|.+...|..+..+|.+.|++++|.+.
T Consensus 152 ~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999998743 33 2222 33346889999999999999998889999999999999999999999999
Q ss_pred HhhCCc
Q 037477 603 LYKCPH 608 (639)
Q Consensus 603 ~~~m~~ 608 (639)
+++...
T Consensus 230 ~~~a~~ 235 (258)
T 3uq3_A 230 LDAART 235 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998643
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.49 E-value=3.4e-12 Score=117.43 Aligned_cols=196 Identities=12% Similarity=0.044 Sum_probs=123.3
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037477 405 EPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVL 484 (639)
Q Consensus 405 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 484 (639)
+++...+..+...+.+.|++++|...|++..+.... +...|..+...+.+.|++++|...+++.++.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 345555666666666666666666666666654432 55666666666666677777777666666654 3345566666
Q ss_pred HHHHHcC-----------CChhHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhH
Q 037477 485 INGFLSQ-----------KRVNGAYKLLVEMIEKVRLRP-WQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPF 552 (639)
Q Consensus 485 i~~~~~~-----------g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 552 (639)
...|... |++++|...|++..+. .| +...|..+-..+...|++++|++.|++..+.. .+...+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~ 154 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIR 154 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHH
Confidence 6666666 7888888888777765 33 35567777777788888888888888877654 333322
Q ss_pred ---HHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037477 553 ---VQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCP 607 (639)
Q Consensus 553 ---~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 607 (639)
..++...|++++|...|++..+..|.+...+..+..++.+.|++++|.+.+++.-
T Consensus 155 ~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 155 SALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 3334577888888888888888888888899999999999999999998888754
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.48 E-value=5e-12 Score=116.33 Aligned_cols=199 Identities=16% Similarity=0.083 Sum_probs=128.6
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 037477 263 KHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLL 342 (639)
Q Consensus 263 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l 342 (639)
+++...+..+...+.+.|++++|...|++..+.. +.+...|..+...+.+.|++++|+..|++..+. .|+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~----- 73 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYL----- 73 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH-----
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcH-----
Confidence 5677888999999999999999999999998874 557889999999999999999999999988764 23321
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc-----------CChhHHHHHHHHHHHCCCCCCHHhH
Q 037477 343 LRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKL-----------GRFDEAEKMMKAMKNAGFEPDNITY 411 (639)
Q Consensus 343 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~~~~~~~ 411 (639)
..+..+..++... |++++|...|++..+.. +-+...|
T Consensus 74 -------------------------------~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~ 121 (217)
T 2pl2_A 74 -------------------------------GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLH 121 (217)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred -------------------------------HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHH
Confidence 1222333333333 66777777777666553 2345566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 037477 412 SQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQ 491 (639)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 491 (639)
..+...|...|++++|+..|++..+.. .+...+..+...|...|++++|...|++..+.. +.+...+..+...+...
T Consensus 122 ~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~ 198 (217)
T 2pl2_A 122 LQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLK 198 (217)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 666666667777777777777766655 466666666666667777777777776666653 33455666666666666
Q ss_pred CChhHHHHHHHHH
Q 037477 492 KRVNGAYKLLVEM 504 (639)
Q Consensus 492 g~~~~A~~~~~~m 504 (639)
|++++|...|++.
T Consensus 199 g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 199 GKAEEAARAAALE 211 (217)
T ss_dssp -------------
T ss_pred cCHHHHHHHHHHH
Confidence 6666666666654
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.46 E-value=2.1e-11 Score=116.49 Aligned_cols=247 Identities=13% Similarity=-0.009 Sum_probs=180.1
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHh
Q 037477 268 TYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSIS 347 (639)
Q Consensus 268 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~ 347 (639)
.+......+...|++++|...|++..+.. +.+...+..+...|...|++++|+..++...+.+-.|+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------------ 71 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATK------------ 71 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTT------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchh------------
Confidence 45556677888999999999999988764 33555788888899999999999999988876321111
Q ss_pred hcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHH
Q 037477 348 SINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDA 427 (639)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 427 (639)
.....|..+...|...|++++|.+.|+...+.. +.+...|..+...|...|++++|
T Consensus 72 -----------------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A 127 (272)
T 3u4t_A 72 -----------------------AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLA 127 (272)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHH
Confidence 112235667778888899999999999888764 34567888888999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC---hhHHHHHHHHH
Q 037477 428 CNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKR---VNGAYKLLVEM 504 (639)
Q Consensus 428 ~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m 504 (639)
...|++..+... .+...|..+...+...+++++|.+.+++..+.. +.+...+..+..++...|+ +++|...|++.
T Consensus 128 ~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 205 (272)
T 3u4t_A 128 IQYMEKQIRPTT-TDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKL 205 (272)
T ss_dssp HHHHGGGCCSSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred HHHHHHHhhcCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence 999988877632 256677777634445569999999999888864 3346677777777777777 77888888887
Q ss_pred HHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHH
Q 037477 505 IEKVRLRPW------QATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQY 555 (639)
Q Consensus 505 ~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 555 (639)
.+...-.|+ ...|..+...|.+.|++++|.+.+++..+ +.|+.......
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~ 260 (272)
T 3u4t_A 206 IEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA--LDPTNKKAIDG 260 (272)
T ss_dssp HHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCccHHHHHHH
Confidence 765322333 24667777778888888888888888776 34554444333
No 41
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.46 E-value=5.5e-11 Score=113.78 Aligned_cols=223 Identities=10% Similarity=0.003 Sum_probs=187.8
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 037477 372 SKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCK----AGRFEDACNVLDEMEENGCIPDIKTWT 447 (639)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~ 447 (639)
+...+..+...|...|++++|.+.|++..+. .+...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3445667788889999999999999999883 356778888899999 999999999999999875 788899
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHHhCCCCCCHHHHHH
Q 037477 448 ILIQGHCA----ANEVDRALLCFAKMMEKNYDADADLLDVLINGFLS----QKRVNGAYKLLVEMIEKVRLRPWQATFKT 519 (639)
Q Consensus 448 ~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ 519 (639)
.+...|.. .+++++|.+.|++..+.+ +...+..+-..|.. .+++++|...|++..+. + +...+..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~ 151 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHH
Confidence 99999999 999999999999999886 77888889899998 99999999999999875 3 5667778
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhCCCCCChHhHHHHHhh----cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 037477 520 LIEKLLG----ARRLEEAMNLLRLMKKQNYPPFPEPFVQYISK----FGTVEDASEFLKALSVKEYPSSAAYLQVFESFF 591 (639)
Q Consensus 520 li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 591 (639)
+...|.. .+++++|.+.+++..+.+.......+..++.. .++.++|...|++..+.. +...+..+...|.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~~~ 229 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQY 229 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--CHHHHHHHHHHHH
Confidence 8888887 89999999999999887532222334445556 899999999999988774 3788889999999
Q ss_pred h----cCCHHHHHHHHhhCCcc
Q 037477 592 N----EGRHYEAKDLLYKCPHH 609 (639)
Q Consensus 592 ~----~g~~~~A~~~~~~m~~~ 609 (639)
. .|++++|.+.+++....
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHH
T ss_pred cCCCcccCHHHHHHHHHHHHHc
Confidence 9 99999999999986433
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.46 E-value=2e-11 Score=115.17 Aligned_cols=199 Identities=8% Similarity=-0.054 Sum_probs=102.6
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037477 374 SVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGH 453 (639)
Q Consensus 374 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~ 453 (639)
..+..+...+...|++++|.+.|+++.+.. +.+...+..+...|...|++++|...|+++.+.... +...+..+...|
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHH
Confidence 445555555666666666666666555443 234455555555555666666666666555544321 445555555555
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 037477 454 CAANEVDRALLCFAKMMEKNYDA-DADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEE 532 (639)
Q Consensus 454 ~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 532 (639)
...|++++|.++++++.+.+..| +...+..+...|...|++++|...|++..+.. ..+...+..+...+...|++++
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHH
Confidence 55555555555555555422222 23444445555555555555555555554431 1123444444444555555555
Q ss_pred HHHHHHHHHhCCCCCChHhHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCc
Q 037477 533 AMNLLRLMKKQNYPPFPEPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPH 608 (639)
Q Consensus 533 A~~~~~~m~~~~~~p~~~~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 608 (639)
|.+.++ ++.+..+.+...+..+...|.+.|++++|.++++++..
T Consensus 194 A~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 194 ARQYYD--------------------------------LFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHH--------------------------------HHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHH--------------------------------HHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555544 44444444555555555555555555555555555433
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.45 E-value=4.1e-11 Score=113.07 Aligned_cols=201 Identities=9% Similarity=-0.038 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 037477 266 TITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRS 345 (639)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~ 345 (639)
...|..+...+...|++++|.+.|+++.+.. +.+...+..+...|...|++++|.+.|+++.+.. |
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~----------- 102 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD--S----------- 102 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-----------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--c-----------
Confidence 5667777788888888888888888887763 4467777788888888888888888887765421 1
Q ss_pred HhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCCH
Q 037477 346 ISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEP-DNITYSQVIFGLCKAGRF 424 (639)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~ 424 (639)
.+..++..+...|...|++++|.+.++++.+.+..| +...+..+...|...|++
T Consensus 103 -------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 157 (252)
T 2ho1_A 103 -------------------------RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKP 157 (252)
T ss_dssp -------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCH
T ss_pred -------------------------CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCH
Confidence 122334555666666777777777777766522233 344556666666667777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 037477 425 EDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEM 504 (639)
Q Consensus 425 ~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 504 (639)
++|...|++..+... .+...+..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|.++++.+
T Consensus 158 ~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 235 (252)
T 2ho1_A 158 AQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQL 235 (252)
T ss_dssp HHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 777777766665432 245566666666666666666666666666543 334555566666666666666666666666
Q ss_pred HHh
Q 037477 505 IEK 507 (639)
Q Consensus 505 ~~~ 507 (639)
.+.
T Consensus 236 ~~~ 238 (252)
T 2ho1_A 236 KRL 238 (252)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.45 E-value=5.5e-11 Score=109.77 Aligned_cols=203 Identities=14% Similarity=0.044 Sum_probs=136.8
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 037477 265 NTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLR 344 (639)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~ 344 (639)
+...|..+...+...|++++|.+.|+++.+.. +.+...|..+...|...|++++|.+.|+.+.+.. |
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~---------- 73 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK--P---------- 73 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T----------
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--C----------
Confidence 45667777778888888888888888877653 3457777778888888888888888887765421 1
Q ss_pred HHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc-CChhHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcC
Q 037477 345 SISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKL-GRFDEAEKMMKAMKNAGFEPD-NITYSQVIFGLCKAG 422 (639)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g 422 (639)
.+..++..+...|... |++++|.+.++.+.+.+..|+ ...+..+...+...|
T Consensus 74 --------------------------~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 127 (225)
T 2vq2_A 74 --------------------------DSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQG 127 (225)
T ss_dssp --------------------------TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTT
T ss_pred --------------------------CChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcC
Confidence 1223455566677777 777777777777776222232 456666777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHH
Q 037477 423 RFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLV 502 (639)
Q Consensus 423 ~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 502 (639)
++++|...|+++.+.... +...+..+...+...|++++|...++++.+.....+...+..+...+...|+.++|..+++
T Consensus 128 ~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 206 (225)
T 2vq2_A 128 QFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEA 206 (225)
T ss_dssp CHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 777777777777665422 4666777777777777777777777777665421455666666666677777777777777
Q ss_pred HHHHh
Q 037477 503 EMIEK 507 (639)
Q Consensus 503 ~m~~~ 507 (639)
.+.+.
T Consensus 207 ~~~~~ 211 (225)
T 2vq2_A 207 QLQAN 211 (225)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66544
No 45
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.44 E-value=7.6e-12 Score=119.76 Aligned_cols=244 Identities=13% Similarity=0.041 Sum_probs=135.0
Q ss_pred cCCChhHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCch
Q 037477 278 RHESVRDFWNVVEEMKKEGY---EMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDL 354 (639)
Q Consensus 278 ~~g~~~~a~~~~~~m~~~g~---~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 354 (639)
..|++++|.+.|+++.+... +.+..+|..+...+...|++++|+..|++..+.. |
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~-------------------- 74 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--P-------------------- 74 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C--------------------
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--C--------------------
Confidence 34566666666666665421 1134556666666666666666666666654320 1
Q ss_pred hHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037477 355 GLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEM 434 (639)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 434 (639)
.+..++..+...|...|++++|.+.|++..+.. +.+...+..+...|...|++++|...|+++
T Consensus 75 ----------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 137 (275)
T 1xnf_A 75 ----------------DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAF 137 (275)
T ss_dssp ----------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----------------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 122334455556666666666666666666543 234556666666777777777777777776
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC-
Q 037477 435 EENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW- 513 (639)
Q Consensus 435 ~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~- 513 (639)
.+.. |+.......+..+...|++++|...+++..... +++...+ .++..+...++.++|...++...+. .|.
T Consensus 138 ~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~ 210 (275)
T 1xnf_A 138 YQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATD---NTSL 210 (275)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS---HHHH
T ss_pred HHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc---cccc
Confidence 6543 333333334444455567777777776666543 2233333 2455555666666666666655332 121
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChHhHHHHHhhcCCHHHHHHHH
Q 037477 514 ----QATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPP-FPEPFVQYISKFGTVEDASEFL 569 (639)
Q Consensus 514 ----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~g~~~~a~~~~ 569 (639)
...|..+...|.+.|++++|...+++..+. .| +...+...+...|++++|.+.+
T Consensus 211 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 211 AEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHNFVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTTCHHHHHHHHHHHHHHHC----
T ss_pred cccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CchhHHHHHHHHHHHHHHHhhHHHH
Confidence 345666666666677777777777666653 23 3333444444555555555443
No 46
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.43 E-value=2e-10 Score=119.51 Aligned_cols=322 Identities=11% Similarity=-0.001 Sum_probs=195.3
Q ss_pred ccChHHHHHHHHHHhcc----CC-CCC-CHHHHHHHHHHHHcC--CChhHHHHHHHHHHHCCCCCCHHHHHHHHHH---H
Q 037477 243 RIYPVKALGFFRWVGEH----SG-YKH-NTITYNGILRVLARH--ESVRDFWNVVEEMKKEGYEMDIDTYIKISRQ---F 311 (639)
Q Consensus 243 ~~~~~~A~~~f~~~~~~----~~-~~p-~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~---~ 311 (639)
.++.++|...|+...+- .+ ..+ ...+++.+..++.+. +++++|.+.|++..+.. +-+...+..+..+ +
T Consensus 107 ~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l 185 (472)
T 4g1t_A 107 MGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRL 185 (472)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh
Confidence 58899999999887421 11 122 345666665555554 56899999999988764 3345555555444 4
Q ss_pred HhcCCHHHHHHHHHHhhcCCCCCC-HHHHHHHHHHHhhcC--CCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCC
Q 037477 312 QKFRMMEDAVKLFEFMMDGPYKPS-VQDCSLLLRSISSIN--NPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGR 388 (639)
Q Consensus 312 ~~~g~~~~a~~l~~~m~~~g~~p~-~~~~~~ll~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 388 (639)
...++.++|++.+++..+. .|+ ...+..+-..+...+ ..+...+...+....... +.+..++..+...|...|+
T Consensus 186 ~~~~~~~~al~~~~~al~l--~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 262 (472)
T 4g1t_A 186 DNWPPSQNAIDPLRQAIRL--NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDE 262 (472)
T ss_dssp HHSCCCCCTHHHHHHHHHH--CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTC
T ss_pred cCchHHHHHHHHHHHHhhc--CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCc
Confidence 4567888899999887764 343 444444444444433 234556777776665543 3356678889999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 037477 389 FDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKA-------------------GRFEDACNVLDEMEENGCIPDIKTWTIL 449 (639)
Q Consensus 389 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-------------------g~~~~A~~~~~~m~~~~~~p~~~t~~~l 449 (639)
+++|.+.+++..+.. +-+..++..+...|... +.+++|...|++..+.... +..++..+
T Consensus 263 ~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l 340 (472)
T 4g1t_A 263 PDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSIL 340 (472)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHH
T ss_pred hHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhH
Confidence 999999999998774 34566777777777542 2356788888887765432 45678889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 037477 450 IQGHCAANEVDRALLCFAKMMEKNYDADAD--LLDVLIN-GFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLG 526 (639)
Q Consensus 450 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~--~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 526 (639)
...|...|++++|.+.|++.++....+... .+..+.. .+...|++++|+..|++..+. .|+.......
T Consensus 341 g~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i---~~~~~~~~~~------ 411 (472)
T 4g1t_A 341 ASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI---NQKSREKEKM------ 411 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS---CCCCHHHHHH------
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CcccHHHHHH------
Confidence 999999999999999999999875433221 2222222 345789999999999998764 5553332222
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChHh---HHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHH
Q 037477 527 ARRLEEAMNLLRLMKKQNYPPFPEP---FVQYISKFGTVEDASEFLKALSVKEYPSSAAY 583 (639)
Q Consensus 527 ~g~~~~A~~~~~~m~~~~~~p~~~~---~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~ 583 (639)
...+.++++...+.. +.+..+ +..++...|+.++|++.|++..+..+.++..+
T Consensus 412 ---~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~ 467 (472)
T 4g1t_A 412 ---KDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSAS 467 (472)
T ss_dssp ---HHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC--------------------
T ss_pred ---HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHh
Confidence 233445555554422 112222 34445678999999999999988754444443
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.43 E-value=3.4e-11 Score=111.23 Aligned_cols=166 Identities=9% Similarity=-0.033 Sum_probs=87.7
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037477 373 KSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQG 452 (639)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~ 452 (639)
...+..+...+...|++++|.+.|+.+.+.. +.+...+..+...|...|++++|...++++.+... .+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHH
Confidence 3445555556666666666666666555543 23345555555556666666666666665554432 144555555555
Q ss_pred HHHc-CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 037477 453 HCAA-NEVDRALLCFAKMMEKNYDAD-ADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRL 530 (639)
Q Consensus 453 ~~~~-g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 530 (639)
|... |++++|...++++.+.+..|+ ...+..+..++...|++++|...|+++.+.. ..+...+..+...+.+.|++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCH
Confidence 5555 666666666655555211222 3445555555555555555555555555431 11244455555555555555
Q ss_pred HHHHHHHHHHHh
Q 037477 531 EEAMNLLRLMKK 542 (639)
Q Consensus 531 ~~A~~~~~~m~~ 542 (639)
++|.+.++++.+
T Consensus 164 ~~A~~~~~~~~~ 175 (225)
T 2vq2_A 164 GDADYYFKKYQS 175 (225)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.41 E-value=2.7e-11 Score=115.84 Aligned_cols=216 Identities=12% Similarity=-0.069 Sum_probs=120.8
Q ss_pred cCChhHHHHHHHHHHHCCC---CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 037477 386 LGRFDEAEKMMKAMKNAGF---EPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRA 462 (639)
Q Consensus 386 ~g~~~~A~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a 462 (639)
.|++++|.+.|+++.+... +.+...|..+...|...|++++|...|+++.+.... +..+|..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHH
Confidence 4566666666666665421 112445566666666666666666666666654322 456666666666666666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 463 LLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 463 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
...+++.++.. +.+...+..+...|...|++++|...|+++.+. .|+.......+..+...|++++|...+++...
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 66666666653 224556666666666666666666666666554 23333333333344555666666666655554
Q ss_pred CCC-CCChHhHHHHHhhcCCHHHHHHHHHHhhcCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 543 QNY-PPFPEPFVQYISKFGTVEDASEFLKALSVKEY----PSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 543 ~~~-~p~~~~~~~ll~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
... .+........+...++.++|...+++.....+ .+...|..+...|.+.|++++|.+.+++.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 241 (275)
T 1xnf_A 173 KSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 241 (275)
T ss_dssp HSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 211 11111122222344555666666666555422 12456666666666666666666666664
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.41 E-value=5.1e-10 Score=106.96 Aligned_cols=224 Identities=11% Similarity=-0.015 Sum_probs=164.3
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhcCCCCCCHHHHH
Q 037477 265 NTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQK----FRMMEDAVKLFEFMMDGPYKPSVQDCS 340 (639)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~~~~ 340 (639)
+..++..+...|...|++++|.+.|++..+.+ +...+..+...|.. .+++++|+..|++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 56677777788888888888888888888743 56777778888888 888888888888776542
Q ss_pred HHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHc----cCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 037477 341 LLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTK----LGRFDEAEKMMKAMKNAGFEPDNITYSQVIF 416 (639)
Q Consensus 341 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 416 (639)
+...+..+...|.. .+++++|.+.|++..+.+ +...+..+..
T Consensus 73 -------------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 118 (273)
T 1ouv_A 73 -------------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGG 118 (273)
T ss_dssp -------------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred -------------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHH
Confidence 12234445555666 788888888888877764 5667777777
Q ss_pred HHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037477 417 GLCK----AGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCA----ANEVDRALLCFAKMMEKNYDADADLLDVLINGF 488 (639)
Q Consensus 417 ~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (639)
.|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+...|
T Consensus 119 ~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 192 (273)
T 1ouv_A 119 IYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMY 192 (273)
T ss_dssp HHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 7877 888888888888877764 55667777777777 788888888888877764 456666777777
Q ss_pred Hc----CCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 037477 489 LS----QKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLG----ARRLEEAMNLLRLMKKQN 544 (639)
Q Consensus 489 ~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 544 (639)
.. .+++++|...|+...+. + +...+..+...|.+ .+++++|.+.+++..+.+
T Consensus 193 ~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 193 HHGEGATKNFKEALARYSKACEL-E---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHTCSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HcCCCCCccHHHHHHHHHHHHhC-C---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 77 78888888888877764 2 24566666677777 777788888887777644
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.40 E-value=1.8e-11 Score=114.70 Aligned_cols=207 Identities=15% Similarity=0.067 Sum_probs=104.2
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037477 372 SKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQ 451 (639)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~ 451 (639)
....|..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|...|+++.+... .+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHH
Confidence 34455566666666777777777777666543 33456666666666677777777777766665432 24566666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 037477 452 GHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLE 531 (639)
Q Consensus 452 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 531 (639)
.|...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. ..+...+..+...+.+.|+++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHH
Confidence 6666666666666666666653 3345556666666666666666666666665541 123445555555566666666
Q ss_pred HHHHHHHHHHhCCCCCC-hHhH---HHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHH
Q 037477 532 EAMNLLRLMKKQNYPPF-PEPF---VQYISKFGTVEDASEFLKALSVKEYPSSAAYLQ 585 (639)
Q Consensus 532 ~A~~~~~~m~~~~~~p~-~~~~---~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 585 (639)
+|.+.++++.+.. |+ ...+ ..++...|+.++|...++++.+..|.+...+..
T Consensus 177 ~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 232 (243)
T 2q7f_A 177 EALSQFAAVTEQD--PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHA 232 (243)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHH
Confidence 6666665555421 21 1111 112234455555555555544444444444433
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.40 E-value=2.3e-11 Score=113.92 Aligned_cols=213 Identities=15% Similarity=0.085 Sum_probs=155.9
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037477 405 EPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVL 484 (639)
Q Consensus 405 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 484 (639)
......|..+...+...|++++|...|+++.+... .+...+..+...|...|++++|.+.++++.+.. +.+...+..+
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 97 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGA 97 (243)
T ss_dssp ----------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHH
Confidence 34556778888889999999999999999987653 367889999999999999999999999998875 4477888899
Q ss_pred HHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hHhH---HHHHhhcC
Q 037477 485 INGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPF-PEPF---VQYISKFG 560 (639)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~---~~ll~~~g 560 (639)
...|...|++++|...|+++.+.. ..+...+..+...+...|++++|.+.++++.+.. |+ ...+ ..++...|
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 173 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEG 173 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcC
Confidence 999999999999999999998762 3356788888999999999999999999988742 33 2222 33346789
Q ss_pred CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCccccCChhHHHhhhcc
Q 037477 561 TVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHHIRQDSKISLLFGSA 623 (639)
Q Consensus 561 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~~~~ 623 (639)
++++|...++++.+..+.+...|..+..+|.+.|++++|.+.+++........+.....++..
T Consensus 174 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 174 MLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 999999999999888888899999999999999999999999999765555555555544443
No 52
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.38 E-value=7.4e-11 Score=112.69 Aligned_cols=241 Identities=9% Similarity=-0.027 Sum_probs=183.4
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 037477 375 VYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIP--DIKTWTILIQG 452 (639)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~t~~~li~~ 452 (639)
.+......+...|++++|.+.|++..+.. +.+...+..+...|...|++++|...+++..+.+..| ....|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34556778899999999999999998874 3355588889999999999999999999998843222 23458899999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHH
Q 037477 453 HCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRP-WQATFKTLIEKLLGARRLE 531 (639)
Q Consensus 453 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~ 531 (639)
|...|++++|.+.+++..+.. +.+..++..+...|...|++++|...|++..+. .| +...|..+...+...++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP---TTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS---SCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc---CCCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999875 346678999999999999999999999988654 34 4566666663444556999
Q ss_pred HHHHHHHHHHhCCCCCChH-hH---HHHHhhcCC---HHHHHHHHHHhhcCC---CC-----CHHHHHHHHHHHHhcCCH
Q 037477 532 EAMNLLRLMKKQNYPPFPE-PF---VQYISKFGT---VEDASEFLKALSVKE---YP-----SSAAYLQVFESFFNEGRH 596 (639)
Q Consensus 532 ~A~~~~~~m~~~~~~p~~~-~~---~~ll~~~g~---~~~a~~~~~~~~~~~---~~-----~~~~~~~l~~~~~~~g~~ 596 (639)
+|.+.++++.+. .|+.. .+ ..++...|+ .++|...+++..+.. +. ....|..+...|.+.|++
T Consensus 160 ~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 160 KADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 999999999873 34432 22 222334466 777888888877652 22 136888899999999999
Q ss_pred HHHHHHHhhCCccccCChhHHHhhhc
Q 037477 597 YEAKDLLYKCPHHIRQDSKISLLFGS 622 (639)
Q Consensus 597 ~~A~~~~~~m~~~~~~~~~~~~l~~~ 622 (639)
++|.+.+++.....+.++.....+..
T Consensus 238 ~~A~~~~~~al~~~p~~~~a~~~l~~ 263 (272)
T 3u4t_A 238 VKADAAWKNILALDPTNKKAIDGLKM 263 (272)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHC-
T ss_pred HHHHHHHHHHHhcCccHHHHHHHhhh
Confidence 99999999975544555554444433
No 53
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.36 E-value=5.6e-09 Score=111.29 Aligned_cols=204 Identities=9% Similarity=-0.030 Sum_probs=105.4
Q ss_pred ChhhHHHHHHHHHccCChhHHH-HHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------CCC
Q 037477 372 SKSVYDGIHRALTKLGRFDEAE-KMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENG---------CIP 441 (639)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------~~p 441 (639)
...+|-..+..+...|+.++|. ++|++.... ++.+...|-..+...-+.|++++|..+|+++.+.. -.|
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p 420 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP 420 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 4445555555555566666664 666666543 23344445556666666666666666666665421 012
Q ss_pred C------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcC-CChhHHHHHHHHHHHh
Q 037477 442 D------------IKTWTILIQGHCAANEVDRALLCFAKMMEK-NYDADADLLDVLINGFLSQ-KRVNGAYKLLVEMIEK 507 (639)
Q Consensus 442 ~------------~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~ 507 (639)
+ ...|...+....+.|+.+.|..+|.+.++. + ......|......-.+. ++.+.|..+|+...+.
T Consensus 421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~ 499 (679)
T 4e6h_A 421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY 499 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 1 224555555555666666666666666654 2 11122222222222222 3366666666666655
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-h-HhHH---HHHhhcCCHHHHHHHHHHhhcCCCCC
Q 037477 508 VRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPF-P-EPFV---QYISKFGTVEDASEFLKALSVKEYPS 579 (639)
Q Consensus 508 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~-~~~~---~ll~~~g~~~~a~~~~~~~~~~~~~~ 579 (639)
++- +...|...++.....|+.+.|..+|++.......+. . ..|. .+-...|+.+.+..+.+++.+..|.+
T Consensus 500 ~p~--~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 500 FAT--DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp HTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred CCC--chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 322 333445555555556666666666666665332111 1 1122 22245566666666666666654433
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.36 E-value=2e-10 Score=114.56 Aligned_cols=231 Identities=9% Similarity=0.122 Sum_probs=167.9
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 037477 265 NTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRM-MEDAVKLFEFMMDGPYKPSVQDCSLLL 343 (639)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~a~~l~~~m~~~g~~p~~~~~~~ll 343 (639)
+...|+.+...+.+.|++++|++.+++..+.. +-+...|+.+..++...|+ +++|+..|++..+. .|
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--~P--------- 163 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QP--------- 163 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CT---------
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--CC---------
Confidence 45677888888889999999999999998874 4467888899999999996 99999999888653 11
Q ss_pred HHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 037477 344 RSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGR 423 (639)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 423 (639)
-+...|..+..++...|++++|+..|+++.+.. +-+...|..+..++.+.|+
T Consensus 164 ---------------------------~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~ 215 (382)
T 2h6f_A 164 ---------------------------KNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKL 215 (382)
T ss_dssp ---------------------------TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred ---------------------------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCC
Confidence 123456666777777888888888888888765 4467788888888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHcCC--Chh
Q 037477 424 FEDACNVLDEMEENGCIPDIKTWTILIQGHCA-ANEVDRA-----LLCFAKMMEKNYDADADLLDVLINGFLSQK--RVN 495 (639)
Q Consensus 424 ~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~-~g~~~~a-----~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~ 495 (639)
+++|+..|+++.+.... +...|+.+..++.. .|..++| ++.+++.++.. +-+...|+.+...+.+.| +++
T Consensus 216 ~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~ 293 (382)
T 2h6f_A 216 WDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYP 293 (382)
T ss_dssp CTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCH
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchH
Confidence 88888888888876544 67788888888887 5554666 47777777754 335667777777777777 577
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHH
Q 037477 496 GAYKLLVEMIEKVRLRPWQATFKTLIEKLLGAR---------RLEEAMNLLRLM 540 (639)
Q Consensus 496 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g---------~~~~A~~~~~~m 540 (639)
+|++.+.++ + ....+...+..+...|.+.| ..++|+++++++
T Consensus 294 ~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 294 NLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 777777776 2 22334556666766666653 235666666665
No 55
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.33 E-value=2.5e-10 Score=113.93 Aligned_cols=225 Identities=11% Similarity=0.041 Sum_probs=188.6
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037477 374 SVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGR-FEDACNVLDEMEENGCIPDIKTWTILIQG 452 (639)
Q Consensus 374 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~t~~~li~~ 452 (639)
..|..+...+.+.|++++|++.+++..+.. +-+...|+.+...+...|+ +++|+..|++..+.... +...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 457777888899999999999999999875 4467889999999999997 99999999999987654 78899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHH
Q 037477 453 HCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLG-ARRLE 531 (639)
Q Consensus 453 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~ 531 (639)
+...|++++|+..|+++++.. +-+...|..+..++.+.|++++|+..|+++.+.. .-+...|+.+..++.+ .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999976 4478899999999999999999999999999862 2256788888888888 66657
Q ss_pred HH-----HHHHHHHHhCCCCCChH-hH---HHHHhhcC--CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC------
Q 037477 532 EA-----MNLLRLMKKQNYPPFPE-PF---VQYISKFG--TVEDASEFLKALSVKEYPSSAAYLQVFESFFNEG------ 594 (639)
Q Consensus 532 ~A-----~~~~~~m~~~~~~p~~~-~~---~~ll~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------ 594 (639)
+| ++.+++..+ +.|+.. .+ ..++...| +.++|.+.+.++ +..+.+...+..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 77 588888877 445543 22 33445666 689999999998 778889999999999999874
Q ss_pred ---CHHHHHHHHhhC
Q 037477 595 ---RHYEAKDLLYKC 606 (639)
Q Consensus 595 ---~~~~A~~~~~~m 606 (639)
..++|++++++.
T Consensus 330 ~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 330 KEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 358999999997
No 56
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.32 E-value=6.8e-11 Score=121.79 Aligned_cols=219 Identities=14% Similarity=0.058 Sum_probs=158.7
Q ss_pred hHHHHHHHHHccC---ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHH
Q 037477 375 VYDGIHRALTKLG---RFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKA----GRFEDACNVLDEMEENGCIPDIKTWT 447 (639)
Q Consensus 375 ~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~t~~ 447 (639)
.+..+...|...| +.++|.+.|+...+.| .++...+..+...|... +++++|...|++.. .| +...+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHH
Confidence 5666777788888 8999999999999887 56666666677777654 79999999999988 43 445666
Q ss_pred HHHHH-H--HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-----ChhHHHHHHHHHHHhCCCCCCHHHHHH
Q 037477 448 ILIQG-H--CAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQK-----RVNGAYKLLVEMIEKVRLRPWQATFKT 519 (639)
Q Consensus 448 ~li~~-~--~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~~~~~p~~~~~~~ 519 (639)
.+... | ...++.++|.+.|++..+.| +...+..|-..|. .| ++++|...|+... . -+...+..
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~----g~~~A~~~ 323 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G----REVAADYY 323 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T----TCHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C----CCHHHHHH
Confidence 66665 3 46889999999999999887 6677777777776 44 8999999998765 2 24556666
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhCCCCCChHhHHHHHh----hcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 037477 520 LIEKLLG----ARRLEEAMNLLRLMKKQNYPPFPEPFVQYIS----KFGTVEDASEFLKALSVKEYPSSAAYLQVFESFF 591 (639)
Q Consensus 520 li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 591 (639)
|-..|.. ..+.++|...|++..+.|...-...+..++. ...+.++|..+|+...+...+........+....
T Consensus 324 Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~ 403 (452)
T 3e4b_A 324 LGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPL 403 (452)
T ss_dssp HHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 6666665 3489999999999998876444444444443 2458999999999988775444443333333333
Q ss_pred hcCCHHHHHHHHhhCC
Q 037477 592 NEGRHYEAKDLLYKCP 607 (639)
Q Consensus 592 ~~g~~~~A~~~~~~m~ 607 (639)
..++.++|..+.++..
T Consensus 404 ~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 404 TPAQRAEGQRLVQQEL 419 (452)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4456777888877753
No 57
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.31 E-value=2.5e-11 Score=118.42 Aligned_cols=234 Identities=13% Similarity=0.067 Sum_probs=170.3
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHC-------CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC
Q 037477 373 KSVYDGIHRALTKLGRFDEAEKMMKAMKNA-------GFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEEN------GC 439 (639)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~ 439 (639)
..++..+...+...|++++|..+++++.+. ..+.....+..+...|...|++++|...+++..+. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456788889999999999999999998863 22334567888999999999999999999998754 21
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhC---
Q 037477 440 IP-DIKTWTILIQGHCAANEVDRALLCFAKMMEK------NYDA-DADLLDVLINGFLSQKRVNGAYKLLVEMIEKV--- 508 (639)
Q Consensus 440 ~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--- 508 (639)
.| ...++..+...|...|++++|.+.+++..+. +..| ....+..+...|...|++++|..+|++..+..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 22 3567888999999999999999999998874 2222 34567788889999999999999999887641
Q ss_pred --CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCChHh---HHHHH-------hhcCCHHHHHHH
Q 037477 509 --RLRP-WQATFKTLIEKLLGARRLEEAMNLLRLMKKQ-------NYPPFPEP---FVQYI-------SKFGTVEDASEF 568 (639)
Q Consensus 509 --~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~p~~~~---~~~ll-------~~~g~~~~a~~~ 568 (639)
+..| ....+..+...|...|++++|.+.++++.+. ...+.... ....+ ...+.+.++...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 1122 2457888899999999999999999998752 11121111 11111 234566666777
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 569 LKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 569 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
++......+....+|..+..+|.+.|++++|.+++++.
T Consensus 267 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 267 YKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 77777666778889999999999999999999999874
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.30 E-value=7.6e-11 Score=119.83 Aligned_cols=301 Identities=13% Similarity=0.068 Sum_probs=210.3
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHH
Q 037477 263 KHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMD----IDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQD 338 (639)
Q Consensus 263 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~ 338 (639)
......+......+...|++++|...|++..+.+ +.+ ...|..+...|...|++++|...+++..+.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------- 76 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL-------- 76 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------
Confidence 4456677778888899999999999999988864 223 357888888999999999999998877531
Q ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHccCChhHHHHHHHHHHHCCC-CCC----HHhHH
Q 037477 339 CSLLLRSISSINNPDLGLVFRVANKYESLGNSL-SKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGF-EPD----NITYS 412 (639)
Q Consensus 339 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~ 412 (639)
+.. .+..+ ...++..+...|...|++++|...+++..+... .++ ..++.
T Consensus 77 -------~~~------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 131 (406)
T 3sf4_A 77 -------ART------------------IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALY 131 (406)
T ss_dssp -------HHH------------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred -------HHh------------------ccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHH
Confidence 000 00001 123466677888899999999998887764310 012 34677
Q ss_pred HHHHHHHhcCC--------------------HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 037477 413 QVIFGLCKAGR--------------------FEDACNVLDEMEEN----GCIP-DIKTWTILIQGHCAANEVDRALLCFA 467 (639)
Q Consensus 413 ~li~~~~~~g~--------------------~~~A~~~~~~m~~~----~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~ 467 (639)
.+...|...|+ +++|...+.+..+. +-.| ...++..+...|...|++++|...++
T Consensus 132 ~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 211 (406)
T 3sf4_A 132 NLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHE 211 (406)
T ss_dssp HHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHH
T ss_pred HHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 88888889999 99999888876532 1111 23467888888999999999999999
Q ss_pred HHHHcCC-CCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 037477 468 KMMEKNY-DAD----ADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW----QATFKTLIEKLLGARRLEEAMNLLR 538 (639)
Q Consensus 468 ~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~ 538 (639)
+..+... .++ ..++..+...|...|++++|...+++..+...-.++ ..++..+...|...|++++|.+.++
T Consensus 212 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 291 (406)
T 3sf4_A 212 QRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHL 291 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 8876311 112 236777888899999999999999887653211122 4577788888999999999999998
Q ss_pred HHHhC----CCCCChH----hHHHHHhhcCCHHHHHHHHHHhhcC------CCCCHHHHHHHHHHHHhcCCHH
Q 037477 539 LMKKQ----NYPPFPE----PFVQYISKFGTVEDASEFLKALSVK------EYPSSAAYLQVFESFFNEGRHY 597 (639)
Q Consensus 539 ~m~~~----~~~p~~~----~~~~ll~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~ 597 (639)
+..+. +..+... .+..++...|++++|...+++..+. .+....++..+...|...|+..
T Consensus 292 ~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 292 KHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 87652 1111111 1233345779999999998887654 1223556777888888777653
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.28 E-value=9.5e-11 Score=119.49 Aligned_cols=243 Identities=11% Similarity=0.013 Sum_probs=149.4
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHH
Q 037477 265 NTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDI----DTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCS 340 (639)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~ 340 (639)
....+..+...+...|++++|...|++..+.+ +.+. ..|..+...|...|++++|+..|++..+.
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------- 115 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL---------- 115 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------
Confidence 34555666778888999999999999988864 2233 46788888888999999999988877531
Q ss_pred HHHHHHhhcCCCchhHHHHHHHHHHhcCC-CCChhhHHHHHHHHHccCChhHHHHHHHHHHHC----CC-CCCHHhHHHH
Q 037477 341 LLLRSISSINNPDLGLVFRVANKYESLGN-SLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNA----GF-EPDNITYSQV 414 (639)
Q Consensus 341 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~~~~l 414 (639)
+. ..+. .....++..+...|...|++++|.+.+++..+. +- .....++..+
T Consensus 116 -----~~------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 172 (411)
T 4a1s_A 116 -----AK------------------SMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNL 172 (411)
T ss_dssp -----HH------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -----HH------------------HccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 00 0111 112346777788888888888888888876543 10 1123456667
Q ss_pred HHHHHhcCC-----------------HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 037477 415 IFGLCKAGR-----------------FEDACNVLDEMEEN----GCIP-DIKTWTILIQGHCAANEVDRALLCFAKMMEK 472 (639)
Q Consensus 415 i~~~~~~g~-----------------~~~A~~~~~~m~~~----~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 472 (639)
...|...|+ +++|...+++..+. +-.+ ...++..+...|...|++++|...+++..+.
T Consensus 173 ~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 252 (411)
T 4a1s_A 173 GNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRI 252 (411)
T ss_dssp HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 777777777 77777777665431 1111 1235666666677777777777777666552
Q ss_pred CC-CCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037477 473 NY-DAD----ADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW----QATFKTLIEKLLGARRLEEAMNLLRLMK 541 (639)
Q Consensus 473 g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 541 (639)
.. ..+ ..++..+...|...|++++|...|++..+...-..+ ..++..+...|...|++++|.+.+++..
T Consensus 253 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 253 AREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 10 011 124555666666667777777666665543111111 3345555556666666666666665554
No 60
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.26 E-value=1.8e-09 Score=96.24 Aligned_cols=166 Identities=16% Similarity=0.115 Sum_probs=137.8
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037477 372 SKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQ 451 (639)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~ 451 (639)
+..+|..+...|...|++++|.+.|++..+.. +-+...|..+...|.+.|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 45678888889999999999999999988775 446778888889999999999999999988876543 6677788888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 037477 452 GHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLE 531 (639)
Q Consensus 452 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 531 (639)
.+...++++.|...+.+..+.. +-+...+..+...|.+.|++++|+..|++..+.. .-+...|..+...|.+.|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK--PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc--chhhhHHHHHHHHHHHCCCHH
Confidence 8889999999999999888864 4467788888889999999999999999888762 224667888888899999999
Q ss_pred HHHHHHHHHHh
Q 037477 532 EAMNLLRLMKK 542 (639)
Q Consensus 532 ~A~~~~~~m~~ 542 (639)
+|++.|++..+
T Consensus 159 ~A~~~~~~al~ 169 (184)
T 3vtx_A 159 EAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998877
No 61
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.25 E-value=8.1e-11 Score=114.73 Aligned_cols=246 Identities=12% Similarity=0.039 Sum_probs=170.1
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHH
Q 037477 265 NTITYNGILRVLARHESVRDFWNVVEEMKKE-------GYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQ 337 (639)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ 337 (639)
+..++..+...+...|++++|..+++++.+. ..+.....+..+...|...|++++|+..+++..+.
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------- 98 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI------- 98 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------
Confidence 5678899999999999999999999998873 22445677889999999999999999999887542
Q ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHC------CCCC-CHHh
Q 037477 338 DCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNA------GFEP-DNIT 410 (639)
Q Consensus 338 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~~-~~~~ 410 (639)
..............++..+...|...|++++|.+.+++..+. +-.| ....
T Consensus 99 -----------------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 99 -----------------------REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQ 155 (311)
T ss_dssp -----------------------HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred -----------------------HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 000000011122346777889999999999999999998764 2122 3456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCC
Q 037477 411 YSQVIFGLCKAGRFEDACNVLDEMEEN------GCIP-DIKTWTILIQGHCAANEVDRALLCFAKMMEK-------NYDA 476 (639)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~~ 476 (639)
+..+...|...|++++|...|+++.+. +-.| ...++..+...|...|++++|.+.++++.+. ...+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 788889999999999999999998764 2122 3457888999999999999999999998863 1111
Q ss_pred C-------HHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 477 D-------ADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 477 ~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
. ...+..+...+...+.+.++...+...... -.....++..+...|.+.|++++|.+.+++..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC-----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 122233334445556666777777766543 122356788888999999999999999998765
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.25 E-value=2.8e-10 Score=115.97 Aligned_cols=273 Identities=12% Similarity=0.012 Sum_probs=192.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHH
Q 037477 300 DIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGI 379 (639)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 379 (639)
....+..+...+...|++++|+..|++..+. .|+..... ..++..+
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~--------------------------------~~~~~~l 92 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQA--GTEDLRTL--------------------------------SAIYSQL 92 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHH--------------------------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh--cccChhHH--------------------------------HHHHHHH
Confidence 4555666777888999999999999998875 23211100 0124456
Q ss_pred HHHHHccCChhHHHHHHHHHHHC----CC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHH
Q 037477 380 HRALTKLGRFDEAEKMMKAMKNA----GF-EPDNITYSQVIFGLCKAGRFEDACNVLDEMEEN----GCI-PDIKTWTIL 449 (639)
Q Consensus 380 i~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~~~t~~~l 449 (639)
...|...|++++|.+.+++..+. +- ......+..+...|...|++++|...+++..+. +-. ....++..+
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 172 (411)
T 4a1s_A 93 GNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNL 172 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 77788889999999988877543 21 223456788888899999999999999887643 111 134578888
Q ss_pred HHHHHHcCC-----------------HHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 037477 450 IQGHCAANE-----------------VDRALLCFAKMMEK----NYDA-DADLLDVLINGFLSQKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 450 i~~~~~~g~-----------------~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (639)
...|...|+ +++|.+.+++..+. +..+ ...++..+...|...|++++|...|++..+.
T Consensus 173 ~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 252 (411)
T 4a1s_A 173 GNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRI 252 (411)
T ss_dssp HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 888999999 99999988887652 2111 2346777888899999999999999887653
Q ss_pred CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCh----H---hHHHHHhhcCCHHHHHHHHHHhhcC
Q 037477 508 VRLRPW----QATFKTLIEKLLGARRLEEAMNLLRLMKKQNYP-PFP----E---PFVQYISKFGTVEDASEFLKALSVK 575 (639)
Q Consensus 508 ~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~----~---~~~~ll~~~g~~~~a~~~~~~~~~~ 575 (639)
..-.++ ...+..+...|...|++++|.+.+++..+.... .+. . .+..++...|++++|..++++....
T Consensus 253 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 253 AREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI 332 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 222233 347788888899999999999999887652110 111 1 2233346789999999999887654
Q ss_pred C------CCCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 576 E------YPSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 576 ~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
. ......+..+..+|.+.|++++|.+.+++.
T Consensus 333 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 333 AQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 1 112457888899999999999999998873
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.24 E-value=2.6e-10 Score=115.89 Aligned_cols=275 Identities=12% Similarity=0.003 Sum_probs=201.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHH
Q 037477 298 EMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYD 377 (639)
Q Consensus 298 ~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (639)
......+......+...|++++|+..|++..+. .|+.... -..++.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~--------------------------------~~~~~~ 51 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKT--------------------------------LSAIYS 51 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHH--------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhc--CcccHHH--------------------------------HHHHHH
Confidence 446677788888999999999999999988764 1211000 012466
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHC----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHH
Q 037477 378 GIHRALTKLGRFDEAEKMMKAMKNA----GFEP-DNITYSQVIFGLCKAGRFEDACNVLDEMEENGCI-PD----IKTWT 447 (639)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~t~~ 447 (639)
.+...|...|++++|...+++.... +-.| ....+..+...|...|++++|...+++..+.... ++ ..++.
T Consensus 52 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 131 (406)
T 3sf4_A 52 QLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALY 131 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHH
Confidence 6778889999999999999886543 2122 2456788889999999999999999987653110 12 44788
Q ss_pred HHHHHHHHcCC--------------------HHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHcCCChhHHHHHHH
Q 037477 448 ILIQGHCAANE--------------------VDRALLCFAKMMEK----NYDA-DADLLDVLINGFLSQKRVNGAYKLLV 502 (639)
Q Consensus 448 ~li~~~~~~g~--------------------~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~ 502 (639)
.+...|...|+ +++|...+++..+. +..+ ...++..+...|...|++++|...++
T Consensus 132 ~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 211 (406)
T 3sf4_A 132 NLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHE 211 (406)
T ss_dssp HHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHH
T ss_pred HHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 88899999999 99999999887652 1111 23467788889999999999999999
Q ss_pred HHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCChH-------hHHHHHhhcCCHHHHHHHHH
Q 037477 503 EMIEKVRLRPW----QATFKTLIEKLLGARRLEEAMNLLRLMKKQNY-PPFPE-------PFVQYISKFGTVEDASEFLK 570 (639)
Q Consensus 503 ~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~-------~~~~ll~~~g~~~~a~~~~~ 570 (639)
+..+...-.++ ...|..+...|...|++++|...+++..+... .++.. .+..++...|++++|...++
T Consensus 212 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 291 (406)
T 3sf4_A 212 QRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHL 291 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 88754222233 34788888999999999999999998775211 11111 12333467899999999999
Q ss_pred HhhcCC--CCC----HHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 571 ALSVKE--YPS----SAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 571 ~~~~~~--~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
+..+.. ..+ ..++..+..+|.+.|++++|.+.+++.
T Consensus 292 ~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 292 KHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 887651 112 667889999999999999999998884
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.24 E-value=9.5e-09 Score=99.99 Aligned_cols=219 Identities=9% Similarity=0.058 Sum_probs=165.5
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCH-------HHHHHHHHHhhcCCCCCCHHHHHHHHHHHhh
Q 037477 283 RDFWNVVEEMKKEGYEMDIDTYIKISRQFQK-------FRMM-------EDAVKLFEFMMDGPYKPSVQDCSLLLRSISS 348 (639)
Q Consensus 283 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-------~g~~-------~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~ 348 (639)
++|..+|++..... +-+...|..++..+.. .|++ ++|..+|++..+. +.|
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p-------------- 96 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLK-------------- 96 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTT--------------
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCc--------------
Confidence 67888888888753 4577788888777753 4775 7888888877652 112
Q ss_pred cCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC-HH-hHHHHHHHHHhcCCHHH
Q 037477 349 INNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPD-NI-TYSQVIFGLCKAGRFED 426 (639)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~-~~~~li~~~~~~g~~~~ 426 (639)
.+...|..++..+.+.|++++|.++|++..+. .|+ .. .|..+...+.+.|++++
T Consensus 97 ----------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~ 152 (308)
T 2ond_A 97 ----------------------KNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKS 152 (308)
T ss_dssp ----------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHH
T ss_pred ----------------------ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHH
Confidence 12335667777888899999999999999875 443 33 78889999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 037477 427 ACNVLDEMEENGCIPDIKTWTILIQGHC-AANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMI 505 (639)
Q Consensus 427 A~~~~~~m~~~~~~p~~~t~~~li~~~~-~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 505 (639)
|..+|++..+... ++...|........ ..|+.++|..+|++.++.. +-+...|..++..+.+.|++++|..+|++..
T Consensus 153 A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al 230 (308)
T 2ond_A 153 GRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVL 230 (308)
T ss_dssp HHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999987653 24455544433322 3699999999999988863 3467888888889999999999999999988
Q ss_pred HhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 037477 506 EKVRLRP--WQATFKTLIEKLLGARRLEEAMNLLRLMKKQ 543 (639)
Q Consensus 506 ~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 543 (639)
....+.| ....|..++..+.+.|+.++|..+++++.+.
T Consensus 231 ~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 231 TSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7533454 3668888888888899999999999988863
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.23 E-value=5e-10 Score=110.21 Aligned_cols=279 Identities=13% Similarity=0.062 Sum_probs=174.4
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 037477 268 TYNGILRVLARHESVRDFWNVVEEMKKEGYEMD----IDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLL 343 (639)
Q Consensus 268 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll 343 (639)
.+......+...|++++|...|+++.+.. +.+ ...+..+...|...|++++|++.+++..+.
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------- 72 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL------------- 72 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------------
Confidence 44555677889999999999999998864 223 467888899999999999999999877531
Q ss_pred HHHhhcCCCchhHHHHHHHHHHhcCCC-CChhhHHHHHHHHHccCChhHHHHHHHHHHHCCC-CCC----HHhHHHHHHH
Q 037477 344 RSISSINNPDLGLVFRVANKYESLGNS-LSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGF-EPD----NITYSQVIFG 417 (639)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~ 417 (639)
... .+.. ....++..+...|...|++++|.+.+++..+... .++ ..++..+...
T Consensus 73 --~~~------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 132 (338)
T 3ro2_A 73 --ART------------------IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNV 132 (338)
T ss_dssp --HHH------------------HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --hhc------------------ccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 000 0000 1123466678888889999999998888654310 112 3367777788
Q ss_pred HHhcCC--------------------HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 037477 418 LCKAGR--------------------FEDACNVLDEMEEN----GCIP-DIKTWTILIQGHCAANEVDRALLCFAKMMEK 472 (639)
Q Consensus 418 ~~~~g~--------------------~~~A~~~~~~m~~~----~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 472 (639)
|...|+ +++|...+++.... +..+ ...++..+...+...|++++|.+.+++..+.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 212 (338)
T 3ro2_A 133 YHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 212 (338)
T ss_dssp HHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 888888 88888888775431 1111 1345667777778888888888888777652
Q ss_pred CC-CCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 037477 473 NY-DAD----ADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW----QATFKTLIEKLLGARRLEEAMNLLRLMKKQ 543 (639)
Q Consensus 473 g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 543 (639)
.. .++ ..++..+...|...|++++|...+++..+...-..+ ..++..+...|...|++++|.+.+++..+.
T Consensus 213 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 213 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 10 011 225566666777777777777777766543111111 345555566666666666666666655431
Q ss_pred CCCCChHhHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 544 NYPPFPEPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 544 ~~~p~~~~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
. +. .++ .+....++..+...|.+.|++++|.+.+++.
T Consensus 293 ~--~~----------~~~--------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 293 A--QE----------LKD--------------RIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp H--HH----------HTC--------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred H--Hh----------cCC--------------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 0 00 000 0011335556666677777777777766653
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.22 E-value=6.5e-09 Score=101.20 Aligned_cols=220 Identities=7% Similarity=-0.001 Sum_probs=171.2
Q ss_pred HHHHHHHHHHhccCCCCCCHHHHHHHHHHHH-------cCCCh-------hHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037477 247 VKALGFFRWVGEHSGYKHNTITYNGILRVLA-------RHESV-------RDFWNVVEEMKKEGYEMDIDTYIKISRQFQ 312 (639)
Q Consensus 247 ~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~-------~~g~~-------~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 312 (639)
++|+..|++..+.. +.+...|..+...+. +.|++ ++|..+|++..+.-.+-+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 46777887775432 346778888887775 45886 899999999997322446778999999999
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChh-hHHHHHHHHHccCChhH
Q 037477 313 KFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKS-VYDGIHRALTKLGRFDE 391 (639)
Q Consensus 313 ~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~ 391 (639)
+.|++++|..+|++..+. .|+. .. +|..+...+.+.|++++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~------------------------------------~~~~~~~~~~~~~~~~~~~~ 152 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDID------------------------------------PTLVYIQYMKFARRAEGIKS 152 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSC------------------------------------THHHHHHHHHHHHHHHCHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccC------------------------------------ccHHHHHHHHHHHHhcCHHH
Confidence 999999999999998763 2221 11 46667777888899999
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 037477 392 AEKMMKAMKNAGFEPDNITYSQVIFGLC-KAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMM 470 (639)
Q Consensus 392 A~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 470 (639)
|.++|++..+.. +.+...|........ ..|++++|..+|++..+.... +...|..++..+.+.|++++|..+|++.+
T Consensus 153 A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al 230 (308)
T 2ond_A 153 GRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVL 230 (308)
T ss_dssp HHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999998764 334455544433322 369999999999998875432 67889999999999999999999999999
Q ss_pred HcC-CCC--CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhC
Q 037477 471 EKN-YDA--DADLLDVLINGFLSQKRVNGAYKLLVEMIEKV 508 (639)
Q Consensus 471 ~~g-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 508 (639)
+.. +.| ....|..++..+.+.|+.+.|..+++++.+..
T Consensus 231 ~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 231 TSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred hccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 863 454 46788888999999999999999999998763
No 67
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.21 E-value=7.2e-10 Score=114.90 Aligned_cols=210 Identities=10% Similarity=0.004 Sum_probs=162.2
Q ss_pred hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 037477 389 FDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRF-EDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFA 467 (639)
Q Consensus 389 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 467 (639)
++++.+.++...... +.+...+..+...|...|++ ++|+..|++..+.... +...|..+...|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455666666655442 34677778888888888888 8888888888776432 57788888888888888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHcC---------CChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------CCH
Q 037477 468 KMMEKNYDADADLLDVLINGFLSQ---------KRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGA--------RRL 530 (639)
Q Consensus 468 ~m~~~g~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~--------g~~ 530 (639)
+.++.. |+...+..+...|... |++++|...|++..+.. .-+...|..+..+|... |++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 888763 6677788888888888 88888888888887752 22466788888888887 889
Q ss_pred HHHHHHHHHHHhCCCCC----ChHhH---HHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037477 531 EEAMNLLRLMKKQNYPP----FPEPF---VQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLL 603 (639)
Q Consensus 531 ~~A~~~~~~m~~~~~~p----~~~~~---~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 603 (639)
++|++.|++..+. .| +...+ ..++...|++++|...|++..+..|.+...+..+..++...|++++|++.+
T Consensus 238 ~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 238 QQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999888873 34 22222 333467799999999999988888889999999999999999999999877
Q ss_pred hhC
Q 037477 604 YKC 606 (639)
Q Consensus 604 ~~m 606 (639)
.++
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 776
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.21 E-value=4.5e-10 Score=110.58 Aligned_cols=267 Identities=10% Similarity=-0.002 Sum_probs=193.0
Q ss_pred ccChHHHHHHHHHHhccCCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcC
Q 037477 243 RIYPVKALGFFRWVGEHSGYKHN--TITYNGILRVLARHESVRDFWNVVEEMKKE----GYE-MDIDTYIKISRQFQKFR 315 (639)
Q Consensus 243 ~~~~~~A~~~f~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-p~~~~~~~li~~~~~~g 315 (639)
.+++++|+..|+.+.+...-.+. ...+..+...+...|++++|.+.+++..+. +.. ....++..+...|...|
T Consensus 18 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 97 (338)
T 3ro2_A 18 SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG 97 (338)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred hccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHcc
Confidence 58899999999998654211111 467889999999999999999999886543 212 23567888999999999
Q ss_pred CHHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCC------
Q 037477 316 MMEDAVKLFEFMMDGPY-KPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGR------ 388 (639)
Q Consensus 316 ~~~~a~~l~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------ 388 (639)
++++|...+++..+... .++.. ....++..+...|...|+
T Consensus 98 ~~~~A~~~~~~al~~~~~~~~~~---------------------------------~~~~~~~~l~~~~~~~~~~~~~~~ 144 (338)
T 3ro2_A 98 NFDEAIVCCQRHLDISRELNDKV---------------------------------GEARALYNLGNVYHAKGKSFGCPG 144 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHH---------------------------------HHHHHHHHHHHHHHHHHHTSSSSS
T ss_pred CHHHHHHHHHHHHHHHHHhcCch---------------------------------HHHHHHHHHHHHHHHcCcccccch
Confidence 99999999988754200 00000 012245566777777788
Q ss_pred --------------hhHHHHHHHHHHHC----CCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HH
Q 037477 389 --------------FDEAEKMMKAMKNA----GFE-PDNITYSQVIFGLCKAGRFEDACNVLDEMEENGC-IPD----IK 444 (639)
Q Consensus 389 --------------~~~A~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~ 444 (639)
+++|.+.+++..+. +.. .....+..+...|...|++++|...+++..+... .++ ..
T Consensus 145 ~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 224 (338)
T 3ro2_A 145 PQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERR 224 (338)
T ss_dssp CC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 88888888776432 111 1234677888899999999999999998764210 012 33
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC----HH
Q 037477 445 TWTILIQGHCAANEVDRALLCFAKMMEKNY-DAD----ADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW----QA 515 (639)
Q Consensus 445 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~ 515 (639)
++..+...+...|++++|...+++..+... ..+ ..++..+...|...|++++|...+++..+...-..+ ..
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 304 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 788888999999999999999998876311 112 456777888999999999999999987654211112 44
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 516 TFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 516 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
++..+...|.+.|++++|.+.+++..+
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 305 ACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 677888899999999999999998876
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.20 E-value=7.5e-10 Score=114.72 Aligned_cols=215 Identities=9% Similarity=-0.064 Sum_probs=166.4
Q ss_pred ChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037477 245 YPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESV-RDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKL 323 (639)
Q Consensus 245 ~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l 323 (639)
..++++..++..... .+.+...|..+...|...|++ ++|.+.|++..+.. +-+...|..+...|...|++++|++.
T Consensus 83 ~~~~al~~l~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 83 EMEKTLQQMEEVLGS--AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHTT--CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 345677777766422 234788999999999999999 99999999998874 44688999999999999999999999
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc---------CChhHHHH
Q 037477 324 FEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKL---------GRFDEAEK 394 (639)
Q Consensus 324 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~ 394 (639)
|+...+. .|+.. .+..+..+|... |++++|.+
T Consensus 160 ~~~al~~--~p~~~-------------------------------------~~~~lg~~~~~~~~~~~~~~~g~~~~A~~ 200 (474)
T 4abn_A 160 FSGALTH--CKNKV-------------------------------------SLQNLSMVLRQLQTDSGDEHSRHVMDSVR 200 (474)
T ss_dssp HHHHHTT--CCCHH-------------------------------------HHHHHHHHHTTCCCSCHHHHHHHHHHHHH
T ss_pred HHHHHhh--CCCHH-------------------------------------HHHHHHHHHHHhccCChhhhhhhHHHHHH
Confidence 9998865 34432 233445555555 88899999
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCHHHHHH
Q 037477 395 MMKAMKNAGFEPDNITYSQVIFGLCKA--------GRFEDACNVLDEMEENGCI--PDIKTWTILIQGHCAANEVDRALL 464 (639)
Q Consensus 395 ~~~~m~~~g~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~--p~~~t~~~li~~~~~~g~~~~a~~ 464 (639)
.|++..+.. +.+...|..+..+|... |++++|...|++..+.... -+...|..+...|...|++++|.+
T Consensus 201 ~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~ 279 (474)
T 4abn_A 201 QAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALE 279 (474)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999888764 44677888888888888 8889999988888875420 267788888888888888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 037477 465 CFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVE 503 (639)
Q Consensus 465 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 503 (639)
.|++..+.. +-+...+..+...+...|++++|...+..
T Consensus 280 ~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 280 GFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 888888764 33566777777778888888777765543
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.19 E-value=5e-10 Score=112.96 Aligned_cols=227 Identities=9% Similarity=-0.037 Sum_probs=169.1
Q ss_pred HHHHHHccCChhHHHHHHHHHHHC----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-----CHHHHH
Q 037477 379 IHRALTKLGRFDEAEKMMKAMKNA----GFEP-DNITYSQVIFGLCKAGRFEDACNVLDEMEENGCI-P-----DIKTWT 447 (639)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p-----~~~t~~ 447 (639)
....+...|++++|.+.|++..+. +-.+ ...++..+...|...|++++|...+.+..+.... + ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556778899999999999998764 1111 2457888899999999999999999987652111 1 235788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHcCCChhHHHHHHHHHHHh---CCCCC-CHHHHH
Q 037477 448 ILIQGHCAANEVDRALLCFAKMMEKNYD-AD----ADLLDVLINGFLSQKRVNGAYKLLVEMIEK---VRLRP-WQATFK 518 (639)
Q Consensus 448 ~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~p-~~~~~~ 518 (639)
.+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|...|++..+. .+..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8899999999999999999988763111 12 246778889999999999999999988762 12213 356788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC---CCCh----HhHHHHHhhcCC---HHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 037477 519 TLIEKLLGARRLEEAMNLLRLMKKQNY---PPFP----EPFVQYISKFGT---VEDASEFLKALSVKEYPSSAAYLQVFE 588 (639)
Q Consensus 519 ~li~~~~~~g~~~~A~~~~~~m~~~~~---~p~~----~~~~~ll~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~ 588 (639)
.+...|.+.|++++|.+.+++..+... .|.. ..+..++...|+ .++|..++++.. ..+.....+..+..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM-LYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc-CHHHHHHHHHHHHH
Confidence 899999999999999999998775211 1111 122333356677 778888887762 23345567889999
Q ss_pred HHHhcCCHHHHHHHHhhC
Q 037477 589 SFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 589 ~~~~~g~~~~A~~~~~~m 606 (639)
.|...|++++|.+.+++.
T Consensus 348 ~y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKV 365 (383)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHH
Confidence 999999999999999884
No 71
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.18 E-value=4.6e-09 Score=93.47 Aligned_cols=160 Identities=13% Similarity=0.071 Sum_probs=95.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 037477 442 DIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLI 521 (639)
Q Consensus 442 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 521 (639)
+...|..+...|...|++++|.+.|++.++.. +-+...+..+..+|.+.|++++|...+....... .-+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHHH
Confidence 44555555566666666666666666655543 2245555555556666666666666666555431 11234444555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChH----hHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH
Q 037477 522 EKLLGARRLEEAMNLLRLMKKQNYPPFPE----PFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHY 597 (639)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 597 (639)
..+...++++.|.+.+.+..+. .|+.. .+..++...|++++|++.|++..+..|.+..+|..+..+|.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 5555666666666666655542 22221 12233346677777777777777767777888888888888888888
Q ss_pred HHHHHHhhC
Q 037477 598 EAKDLLYKC 606 (639)
Q Consensus 598 ~A~~~~~~m 606 (639)
+|++.|++.
T Consensus 159 ~A~~~~~~a 167 (184)
T 3vtx_A 159 EAVKYFKKA 167 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888774
No 72
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.17 E-value=7.7e-10 Score=113.87 Aligned_cols=339 Identities=10% Similarity=-0.029 Sum_probs=217.7
Q ss_pred hccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---
Q 037477 242 LRIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESV---RDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFR--- 315 (639)
Q Consensus 242 ~~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--- 315 (639)
-.+++++|++.|+...+. | +...+..|-..|...|+. ++|.+.|++..+. +...+..+...+...+
T Consensus 15 ~~g~~~~A~~~~~~aa~~-g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~ 86 (452)
T 3e4b_A 15 KRGDTVTAQQNYQQLAEL-G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGAT 86 (452)
T ss_dssp HHHHHHHHHHHHHHHHHH-T---CCTGGGTCC--------------------------------CHHHHHHHHHTC--CC
T ss_pred hCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCC
Confidence 358899999999998643 3 445666677777788888 8999999988754 5556666666555555
Q ss_pred --CHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCC-CchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHH
Q 037477 316 --MMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINN-PDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEA 392 (639)
Q Consensus 316 --~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 392 (639)
++++|+..|+...+.|... .+..|-..|...+. .....+...+......+. ......+...|...+.++++
T Consensus 87 ~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~ 160 (452)
T 3e4b_A 87 EAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQH 160 (452)
T ss_dssp HHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGG
T ss_pred CcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccC
Confidence 7899999999998876433 44445555554432 122344444544444443 44566777888888866655
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----CCHHHHHHH
Q 037477 393 EKMMKAMKNAGFEPDNITYSQVIFGLCKAG---RFEDACNVLDEMEENGCIPDIKTWTILIQGHCAA----NEVDRALLC 465 (639)
Q Consensus 393 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~----g~~~~a~~~ 465 (639)
......+.+.-...++..+..|...|...| +.++|+..|++..+.|. ++...+..+...|... ++.++|.+.
T Consensus 161 ~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~ 239 (452)
T 3e4b_A 161 LDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQAL 239 (452)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 555444333222334448888999999999 99999999999998875 3666666677777655 799999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHH-H--HcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHH
Q 037477 466 FAKMMEKNYDADADLLDVLING-F--LSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGAR-----RLEEAMNLL 537 (639)
Q Consensus 466 ~~~m~~~g~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~ 537 (639)
|++.. .| +...+..|-.. | ...+++++|...|++..+. | +...+..|-..|. .| ++++|.+.|
T Consensus 240 ~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~ 310 (452)
T 3e4b_A 240 LEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHF 310 (452)
T ss_dssp HHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHH
T ss_pred HHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHH
Confidence 99988 54 45556666555 4 4688999999999998876 4 5667777777776 45 999999999
Q ss_pred HHHHhCCCCCChHhHHHHHhh----cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHhhCC
Q 037477 538 RLMKKQNYPPFPEPFVQYISK----FGTVEDASEFLKALSVKEYPSSAAYLQVFESFFN----EGRHYEAKDLLYKCP 607 (639)
Q Consensus 538 ~~m~~~~~~p~~~~~~~ll~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~ 607 (639)
++.. .|.......+..++.. ..+.++|..+|++..+.. ++.....|...|.. ..+.++|...+++--
T Consensus 311 ~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 311 EKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp HTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred HHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 9887 4432222233333332 349999999999988753 45566778888875 458999999999853
No 73
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.17 E-value=3.8e-07 Score=97.29 Aligned_cols=442 Identities=8% Similarity=-0.015 Sum_probs=281.0
Q ss_pred HHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHHHHHH
Q 037477 110 EKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAALNQF 189 (639)
Q Consensus 110 ~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~~~ 189 (639)
.+.+..|+......+ -|..+|..+|..+.+.+.++.+..+|+.+... .+.....|..-+..-.+.|..
T Consensus 49 ~d~i~~lE~~l~~np--~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~--------- 116 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQP--TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEE--------- 116 (679)
T ss_dssp SCHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--C---------
T ss_pred HHHHHHHHHHHHHCc--CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCc---------
Confidence 334444444333232 68999999999999999999999999999876 344455555444433332210
Q ss_pred HHHHhhhccchhHHHHHHHHHhcCCchHHHHHHHhhccCcCCHHHHHHHHHHhccChHHHHHHHHHHhccCCCCCCHHHH
Q 037477 190 HDGMVKEIAMDNVAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKHNTITY 269 (639)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p~~~~~ 269 (639)
...+.+..+|++........|++..|
T Consensus 117 ------------------------------------------------------~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 117 ------------------------------------------------------LDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp ------------------------------------------------------CCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred ------------------------------------------------------chHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 11445666666664332224777788
Q ss_pred HHHHHHHHcCCCh--------hHHHHHHHHHHH-CCC-CC-CHHHHHHHHHHHH---------hcCCHHHHHHHHHHhhc
Q 037477 270 NGILRVLARHESV--------RDFWNVVEEMKK-EGY-EM-DIDTYIKISRQFQ---------KFRMMEDAVKLFEFMMD 329 (639)
Q Consensus 270 ~~li~~~~~~g~~--------~~a~~~~~~m~~-~g~-~p-~~~~~~~li~~~~---------~~g~~~~a~~l~~~m~~ 329 (639)
...+....+.++. +.+.++|+.... .|. .+ +...|...+.... ..++++.+..+|+..+.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 7777666555443 334567776544 365 44 3567777776543 33457888999999886
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCC-----------chhHHHHHHHHHHhc--CCC---CC--------------------h
Q 037477 330 GPYKPSVQDCSLLLRSISSINNP-----------DLGLVFRVANKYESL--GNS---LS--------------------K 373 (639)
Q Consensus 330 ~g~~p~~~~~~~ll~~~~~~~~~-----------~~~~~~~~~~~~~~~--~~~---~~--------------------~ 373 (639)
.....-..+|......-...+.. +...+......+... ++. |. .
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 43222233443222211111110 011112222222221 211 11 1
Q ss_pred hhHHHHHHHHHccC-------ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHH
Q 037477 374 SVYDGIHRALTKLG-------RFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDAC-NVLDEMEENGCIPDIKT 445 (639)
Q Consensus 374 ~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~p~~~t 445 (639)
..|...+.---..+ ..+.+..+|++....- +-+...|-..+.-+...|+.++|. .+|++..... ..+...
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~L 380 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHH
Confidence 24555554333322 1234556788777653 446778888888888899999997 9999988643 346667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC---------CCC------------HHHHHHHHHHHHcCCChhHHHHHHHHH
Q 037477 446 WTILIQGHCAANEVDRALLCFAKMMEKNY---------DAD------------ADLLDVLINGFLSQKRVNGAYKLLVEM 504 (639)
Q Consensus 446 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~---------~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m 504 (639)
|-..+....+.|+++.|.++|+++++... .|+ ..+|...+....+.|..+.|..+|...
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888889999999999999999998520 132 246777888888889999999999999
Q ss_pred HHh-CCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCChH----hHHHHHhhcCCHHHHHHHHHHhhcCCCC
Q 037477 505 IEK-VRLRPWQATFKTLIEKLLGA-RRLEEAMNLLRLMKKQNYPPFPE----PFVQYISKFGTVEDASEFLKALSVKEYP 578 (639)
Q Consensus 505 ~~~-~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~g~~~~a~~~~~~~~~~~~~ 578 (639)
.+. ....+......+.+. .+. ++.+.|..+|+...+. .|+.. .|..+....|+.+.|..+|++.....++
T Consensus 461 ~~~~~~~~~~lyi~~A~lE--~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 461 RRLKKLVTPDIYLENAYIE--YHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHTGGGSCTHHHHHHHHHH--HTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHhcCCCChHHHHHHHHHH--HHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 875 223333333333333 333 5589999999998874 23332 3444446789999999999999988653
Q ss_pred ---CHHHHHHHHHHHHhcCCHHHHHHHHhhCCccccCChhHHHhhhcc
Q 037477 579 ---SSAAYLQVFESFFNEGRHYEAKDLLYKCPHHIRQDSKISLLFGSA 623 (639)
Q Consensus 579 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~~~~ 623 (639)
....|...+..-.+.|+.+.+.++.++|....+.++.+..+..--
T Consensus 537 ~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 537 SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFTNKY 584 (679)
T ss_dssp TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHh
Confidence 556788888888899999999999999988777777777665433
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.13 E-value=7.3e-09 Score=91.94 Aligned_cols=163 Identities=15% Similarity=0.110 Sum_probs=137.7
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037477 375 VYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHC 454 (639)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~ 454 (639)
.+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 45667778889999999999999887653 44677888899999999999999999999887643 36788888999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037477 455 AANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAM 534 (639)
Q Consensus 455 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 534 (639)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...+++..+.. ..+...+..+...+...|++++|.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999998874 4577888888899999999999999999988762 335678888889999999999999
Q ss_pred HHHHHHHh
Q 037477 535 NLLRLMKK 542 (639)
Q Consensus 535 ~~~~~m~~ 542 (639)
+.+++..+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998876
No 75
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.10 E-value=7.8e-10 Score=105.90 Aligned_cols=223 Identities=13% Similarity=0.038 Sum_probs=150.3
Q ss_pred HccCChhHHHHHHHHHHHC-------CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHH
Q 037477 384 TKLGRFDEAEKMMKAMKNA-------GFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEEN------GCIP-DIKTWTIL 449 (639)
Q Consensus 384 ~~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~t~~~l 449 (639)
...|++++|...+++..+. ..+....++..+...|...|++++|...+++..+. +-.| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456666666666665542 21224567888889999999999999999987753 2122 34678888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhC-----CCCC-CHHH
Q 037477 450 IQGHCAANEVDRALLCFAKMMEK------NY-DADADLLDVLINGFLSQKRVNGAYKLLVEMIEKV-----RLRP-WQAT 516 (639)
Q Consensus 450 i~~~~~~g~~~~a~~~~~~m~~~------g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~p-~~~~ 516 (639)
...|...|++++|.+.+++..+. .- +....++..+...|...|++++|...|++..+.. +-.| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999988764 11 2235677888889999999999999999887641 1122 2567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCChHhHHHHH----h------hcCCHHHHHHHHHHhhcCCCCC
Q 037477 517 FKTLIEKLLGARRLEEAMNLLRLMKKQ-------NYPPFPEPFVQYI----S------KFGTVEDASEFLKALSVKEYPS 579 (639)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~p~~~~~~~ll----~------~~g~~~~a~~~~~~~~~~~~~~ 579 (639)
+..+...|...|++++|.+.+++..+. ...+....+...+ . ....+..+...++......+..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888889999999999999999988752 1222222221111 1 1233444444444444334556
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 580 SAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 580 ~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
...+..+..+|.+.|++++|.+++++.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 678999999999999999999999874
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.09 E-value=6e-09 Score=104.78 Aligned_cols=227 Identities=11% Similarity=-0.053 Sum_probs=167.1
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCC-CCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C---CC-CHHHHH
Q 037477 379 IHRALTKLGRFDEAEKMMKAMKNAGF-EPD----NITYSQVIFGLCKAGRFEDACNVLDEMEENG--C---IP-DIKTWT 447 (639)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~---~p-~~~t~~ 447 (639)
....+...|++++|...|++..+... .++ ..++..+...|...|++++|...+.+..+.. . .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 44567789999999999999875421 122 3567888899999999999999999876421 1 11 245788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhC---CCCCCHHHHHH
Q 037477 448 ILIQGHCAANEVDRALLCFAKMMEK----NYDA-DADLLDVLINGFLSQKRVNGAYKLLVEMIEKV---RLRPWQATFKT 519 (639)
Q Consensus 448 ~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~p~~~~~~~ 519 (639)
.+...|...|++++|.+.+++..+. +..+ ...++..+...|...|++++|...|++..+.. +......++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 8999999999999999999988773 1111 23467778889999999999999999887611 11122667888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC---CCChHhH----HHHHhhcCC---HHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 037477 520 LIEKLLGARRLEEAMNLLRLMKKQNY---PPFPEPF----VQYISKFGT---VEDASEFLKALSVKEYPSSAAYLQVFES 589 (639)
Q Consensus 520 li~~~~~~g~~~~A~~~~~~m~~~~~---~p~~~~~----~~ll~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 589 (639)
+...|.+.|++++|.+.+++..+... .|..... ..++...|+ +++|..++++.. ..+.....+..+...
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN-LHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-ChhHHHHHHHHHHHH
Confidence 88999999999999999999886322 1222221 222245677 777888877632 233345677889999
Q ss_pred HHhcCCHHHHHHHHhhC
Q 037477 590 FFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 590 ~~~~g~~~~A~~~~~~m 606 (639)
|...|++++|.+.+++.
T Consensus 346 y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKV 362 (378)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 99999999999999885
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.08 E-value=2.5e-08 Score=88.46 Aligned_cols=166 Identities=13% Similarity=0.076 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHH
Q 037477 301 IDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIH 380 (639)
Q Consensus 301 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 380 (639)
...|..+...+...|++++|+..|+.+.+.. | .+..++..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~------------------------------------~~~~~~~~~~ 49 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD--A------------------------------------FDVDVALHLG 49 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT--S------------------------------------CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--c------------------------------------cChHHHHHHH
Confidence 4567778888999999999999999886531 1 1233466677
Q ss_pred HHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 037477 381 RALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVD 460 (639)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~ 460 (639)
..+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+...|+++
T Consensus 50 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~ 127 (186)
T 3as5_A 50 IAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFD 127 (186)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHH
Confidence 88889999999999999998764 45678889999999999999999999999987643 37788999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 037477 461 RALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 461 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (639)
+|...++++.+.. +.+...+..+...|...|++++|...++...+.
T Consensus 128 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 128 EAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999875 456788999999999999999999999988764
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.07 E-value=5.6e-08 Score=89.82 Aligned_cols=207 Identities=7% Similarity=-0.042 Sum_probs=146.5
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037477 372 SKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQ 451 (639)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~ 451 (639)
++..+......+...|++++|.+.|+...+...+++...+..+..++...|++++|+..|++..+.... +...|..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 345666777788888999999999998887753367777777888888999999999999988876533 5567888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC---HHHHHHHH
Q 037477 452 GHCAANEVDRALLCFAKMMEKNYDADA-------DLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW---QATFKTLI 521 (639)
Q Consensus 452 ~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~---~~~~~~li 521 (639)
.|...|++++|...+++..+.. +.+. ..|..+-..+...|++++|...|++..+. .|+ ...|..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---SCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---CCCcccHHHHHHHH
Confidence 8899999999999999888864 2244 45667777788888999999998887653 554 34556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHH-hhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 037477 522 EKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYI-SKFGTVEDASEFLKALSVKEYPSSAAYLQVFES 589 (639)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 589 (639)
..|...| ..+++++...+ ..+...+.... ...+.+++|...+++..+..|.+..+...+...
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 6665433 34455554432 12233333333 344667888888888888777777766655443
No 79
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.06 E-value=1.2e-08 Score=102.82 Aligned_cols=232 Identities=9% Similarity=0.001 Sum_probs=136.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHc
Q 037477 307 ISRQFQKFRMMEDAVKLFEFMMDGP-YKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTK 385 (639)
Q Consensus 307 li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 385 (639)
....+...|++++|+..|++..+.- -.++... ...++..+...|..
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---------------------------------~a~~~~~lg~~~~~ 155 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIE---------------------------------KAEFFFKMSESYYY 155 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHH---------------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHH---------------------------------HHHHHHHHHHHHHH
Confidence 4556677888888888888776531 0111110 12245556667777
Q ss_pred cCChhHHHHHHHHHHHCCC-CC-----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHH
Q 037477 386 LGRFDEAEKMMKAMKNAGF-EP-----DNITYSQVIFGLCKAGRFEDACNVLDEMEENGCI-PD----IKTWTILIQGHC 454 (639)
Q Consensus 386 ~g~~~~A~~~~~~m~~~g~-~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~t~~~li~~~~ 454 (639)
.|++++|.+.+.+..+.-. .+ ...+++.+...|...|++++|...|++..+.... ++ ..++..+...|.
T Consensus 156 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 235 (383)
T 3ulq_A 156 MKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKN 235 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 7777777777776654210 01 1345666777777777777777777776532100 11 236666777777
Q ss_pred HcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh
Q 037477 455 AANEVDRALLCFAKMMEK----NY-DADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW---QATFKTLIEKLLG 526 (639)
Q Consensus 455 ~~g~~~~a~~~~~~m~~~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~---~~~~~~li~~~~~ 526 (639)
..|++++|.+.+++..+. +. +....++..+...|.+.|++++|...+++..+...-..+ ...+..+...+..
T Consensus 236 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~ 315 (383)
T 3ulq_A 236 SQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLS 315 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTS
T ss_pred HCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 777777777777777661 22 223456667777777777777777777765543111111 2234556666677
Q ss_pred cCC---HHHHHHHHHHHHhCCCCCChHh----HHHHHhhcCCHHHHHHHHHHhhc
Q 037477 527 ARR---LEEAMNLLRLMKKQNYPPFPEP----FVQYISKFGTVEDASEFLKALSV 574 (639)
Q Consensus 527 ~g~---~~~A~~~~~~m~~~~~~p~~~~----~~~ll~~~g~~~~a~~~~~~~~~ 574 (639)
.|+ +++|+.++++. +..|+... +..++...|+.++|..++++..+
T Consensus 316 ~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 316 GPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp SCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777 55555555544 34443332 23334566777777777776654
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.04 E-value=7.2e-08 Score=96.59 Aligned_cols=299 Identities=12% Similarity=-0.004 Sum_probs=181.2
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 037477 268 TYNGILRVLARHESVRDFWNVVEEMKKEGYEMDID----TYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLL 343 (639)
Q Consensus 268 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll 343 (639)
.+......+...|++++|...+++.....-..+.. .++.+...+...|++++|...+++.....
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------ 83 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA------------ 83 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH------------
Confidence 33444456677899999999998877754222322 45667777888899999988888775420
Q ss_pred HHHhhcCCCchhHHHHHHHHHHhcCCC-CChhhHHHHHHHHHccCChhHHHHHHHHHHHC----CCC--C-CHHhHHHHH
Q 037477 344 RSISSINNPDLGLVFRVANKYESLGNS-LSKSVYDGIHRALTKLGRFDEAEKMMKAMKNA----GFE--P-DNITYSQVI 415 (639)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--~-~~~~~~~li 415 (639)
.. .+.. ....++..+...+...|++++|...+++..+. +.. | ....+..+.
T Consensus 84 ---~~------------------~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 142 (373)
T 1hz4_A 84 ---RQ------------------HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRA 142 (373)
T ss_dssp ---HH------------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHH
T ss_pred ---Hh------------------cCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHH
Confidence 00 0000 01123556777888889999988888877643 211 2 234556677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC--C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHH----HHH
Q 037477 416 FGLCKAGRFEDACNVLDEMEENGCI--P--DIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDAD--ADLLD----VLI 485 (639)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~~~~--p--~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~----~li 485 (639)
..+...|++++|...+++....... + ...++..+...+...|++++|...+++.....-.++ ..... ..+
T Consensus 143 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 222 (373)
T 1hz4_A 143 QLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRV 222 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHH
Confidence 7788888888888888887654221 1 235677777888888888888888888776321111 12111 122
Q ss_pred HHHHcCCChhHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCChH-h---HHHH
Q 037477 486 NGFLSQKRVNGAYKLLVEMIEKVRLRP--WQATFKTLIEKLLGARRLEEAMNLLRLMKKQ----NYPPFPE-P---FVQY 555 (639)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~-~---~~~l 555 (639)
..+...|++++|...+++........+ ....+..+...+...|++++|...++...+. |..++.. . ...+
T Consensus 223 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~ 302 (373)
T 1hz4_A 223 IYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQL 302 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHH
Confidence 346788888888888877654311111 1234566677788888888888888776542 2111111 1 1222
Q ss_pred HhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037477 556 ISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKC 606 (639)
Q Consensus 556 l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 606 (639)
+...|+.++|...+++.....++ .-.+..+...| +....+++++
T Consensus 303 ~~~~g~~~~A~~~l~~al~~~~~-----~g~~~~~~~~g--~~~~~ll~~~ 346 (373)
T 1hz4_A 303 YWQAGRKSDAQRVLLDALKLANR-----TGFISHFVIEG--EAMAQQLRQL 346 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHH-----HCCCHHHHTTH--HHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHhcc-----ccHHHHHHHcc--HHHHHHHHHH
Confidence 34667788888777777654211 11233444445 4555666654
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.01 E-value=1.9e-08 Score=108.61 Aligned_cols=164 Identities=13% Similarity=0.092 Sum_probs=145.1
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037477 373 KSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQG 452 (639)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~ 452 (639)
...|+.+..+|.+.|++++|++.|++..+.. +-+...|..+..+|.+.|++++|+..|++..+.... +...|..+...
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4678889999999999999999999998874 345788999999999999999999999999886533 57899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHH
Q 037477 453 HCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW-QATFKTLIEKLLGARRLE 531 (639)
Q Consensus 453 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~ 531 (639)
|...|++++|.+.|++.++.. +-+...|+.+..+|.+.|++++|+..|++..+. .|+ ...|..+...|...|+++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l---~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL---KPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHhhhhhHHHhcccHH
Confidence 999999999999999999875 346889999999999999999999999999876 444 678899999999999999
Q ss_pred HHHHHHHHHHh
Q 037477 532 EAMNLLRLMKK 542 (639)
Q Consensus 532 ~A~~~~~~m~~ 542 (639)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998887754
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.99 E-value=2.2e-07 Score=93.10 Aligned_cols=302 Identities=13% Similarity=-0.012 Sum_probs=206.3
Q ss_pred HHHHHhccChHHHHHHHHHHhccCCCCCCH----HHHHHHHHHHHcCCChhHHHHHHHHHHHCCC-CCC----HHHHHHH
Q 037477 237 TVLKELRIYPVKALGFFRWVGEHSGYKHNT----ITYNGILRVLARHESVRDFWNVVEEMKKEGY-EMD----IDTYIKI 307 (639)
Q Consensus 237 ~~l~~~~~~~~~A~~~f~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~l 307 (639)
..+....+++++|...++....... ..+. .+++.+...+...|++++|.+.+++...... ..+ ..++..+
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3344457999999999999865432 1222 2567777888899999999999998765310 112 2346778
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCC--C-ChhhHHHHHHHHH
Q 037477 308 SRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNS--L-SKSVYDGIHRALT 384 (639)
Q Consensus 308 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~li~~~~ 384 (639)
...+...|++++|...+++..+. ....+.. + ....+..+...+.
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~---------------------------------~~~~~~~~~~~~~~~~~~la~~~~ 146 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQL---------------------------------INEQHLEQLPMHEFLVRIRAQLLW 146 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---------------------------------HHHTTCTTSTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH---------------------------------HHHhccccCcHHHHHHHHHHHHHH
Confidence 88999999999999999877531 1111221 2 2346677888999
Q ss_pred ccCChhHHHHHHHHHHHCCCCC----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHH
Q 037477 385 KLGRFDEAEKMMKAMKNAGFEP----DNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPD--IKTWT----ILIQGHC 454 (639)
Q Consensus 385 ~~g~~~~A~~~~~~m~~~g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~----~li~~~~ 454 (639)
..|++++|...+++........ ...++..+...+...|++++|...+++.......++ ..... ..+..+.
T Consensus 147 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (373)
T 1hz4_A 147 AWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQ 226 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHH
Confidence 9999999999999987653221 234677788889999999999999999875321111 22111 2334477
Q ss_pred HcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhC---CCCCCH-HHHHHHHHHHHhc
Q 037477 455 AANEVDRALLCFAKMMEKNYDA---DADLLDVLINGFLSQKRVNGAYKLLVEMIEKV---RLRPWQ-ATFKTLIEKLLGA 527 (639)
Q Consensus 455 ~~g~~~~a~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~p~~-~~~~~li~~~~~~ 527 (639)
..|++++|...+++.......+ ....+..+...+...|++++|...++...... +..++. ..+..+..++...
T Consensus 227 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 306 (373)
T 1hz4_A 227 MTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA 306 (373)
T ss_dssp HTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHh
Confidence 9999999999999887643221 13356677888999999999999999876531 211222 3566677888899
Q ss_pred CCHHHHHHHHHHHHhCCCCCChHhHHHHHhhcCCHHHHHHHHHHhhcCCC
Q 037477 528 RRLEEAMNLLRLMKKQNYPPFPEPFVQYISKFGTVEDASEFLKALSVKEY 577 (639)
Q Consensus 528 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~g~~~~a~~~~~~~~~~~~ 577 (639)
|+.++|...+++..+.. +. .-+...+...| +....+++.+....+
T Consensus 307 g~~~~A~~~l~~al~~~--~~-~g~~~~~~~~g--~~~~~ll~~~~~~~~ 351 (373)
T 1hz4_A 307 GRKSDAQRVLLDALKLA--NR-TGFISHFVIEG--EAMAQQLRQLIQLNT 351 (373)
T ss_dssp TCHHHHHHHHHHHHHHH--HH-HCCCHHHHTTH--HHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHh--cc-ccHHHHHHHcc--HHHHHHHHHHHhCCC
Confidence 99999999999988631 11 11222233333 556666666666544
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.99 E-value=2.7e-08 Score=95.02 Aligned_cols=236 Identities=11% Similarity=0.017 Sum_probs=152.3
Q ss_pred HcCCChhHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhc
Q 037477 277 ARHESVRDFWNVVEEMKK-------EGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSI 349 (639)
Q Consensus 277 ~~~g~~~~a~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~ 349 (639)
...|++++|...+++..+ ...+....++..+...|...|++++|+..|++..+.
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------------- 72 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAI------------------- 72 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-------------------
Confidence 345666666666665544 222334677888999999999999999999887542
Q ss_pred CCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHC------C-CCCCHHhHHHHHHHHHhcC
Q 037477 350 NNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNA------G-FEPDNITYSQVIFGLCKAG 422 (639)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g-~~~~~~~~~~li~~~~~~g 422 (639)
..............++..+...|...|++++|.+.+++..+. . -+.....+..+...|...|
T Consensus 73 -----------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 141 (283)
T 3edt_B 73 -----------REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQG 141 (283)
T ss_dssp -----------HHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT
T ss_pred -----------HHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcC
Confidence 000000001112346777889999999999999999988764 1 1223567888899999999
Q ss_pred CHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCC-CHHHHHHHHHH
Q 037477 423 RFEDACNVLDEMEEN------GCIP-DIKTWTILIQGHCAANEVDRALLCFAKMMEK-------NYDA-DADLLDVLING 487 (639)
Q Consensus 423 ~~~~A~~~~~~m~~~------~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~~-~~~~~~~li~~ 487 (639)
++++|...|++..+. +-.| ...++..+...|...|++++|...+++..+. ...+ ....+..+...
T Consensus 142 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (283)
T 3edt_B 142 KAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEER 221 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH
Confidence 999999999998764 1122 3467888999999999999999999988863 1122 22233333333
Q ss_pred HHcCCChhHHHHHHHHHH--HhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 488 FLSQKRVNGAYKLLVEMI--EKVR-LRP-WQATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~--~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
+...+....+..+..... +..+ ..| ...++..+...|...|++++|.+++++..+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 222 EESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 443333333222211111 1101 112 245677888889999999999999988765
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.97 E-value=3.9e-08 Score=90.83 Aligned_cols=211 Identities=12% Similarity=-0.031 Sum_probs=155.2
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037477 405 EPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVL 484 (639)
Q Consensus 405 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 484 (639)
..|+..+......+...|++++|...|++..+....++...+..+..++...|++++|.+.+++..+.. +-+...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 346678888899999999999999999999887654677888889999999999999999999999875 3356778888
Q ss_pred HHHHHcCCChhHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hHhHHHHHh
Q 037477 485 INGFLSQKRVNGAYKLLVEMIEKVRLRPWQ-----ATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPF--PEPFVQYIS 557 (639)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~ 557 (639)
...|...|++++|...|++..+...-.+.. ..|..+-..+...|++++|++.+++..+ ..|+ .......++
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHH
Confidence 999999999999999999998763222211 4577777888899999999999999987 3465 222111111
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCccccCChhHHHhhh
Q 037477 558 KFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHHIRQDSKISLLFG 621 (639)
Q Consensus 558 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~~ 621 (639)
.+ ....+..+++++....+.+...|.... ....|.+++|...+++...-.+..+....+++
T Consensus 161 ~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 221 (228)
T 4i17_A 161 VL-FYNNGADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQD 221 (228)
T ss_dssp HH-HHHHHHHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 11 134455666777666666666665544 34467789999999987554455555555444
No 85
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.96 E-value=5.4e-07 Score=90.40 Aligned_cols=231 Identities=13% Similarity=0.117 Sum_probs=139.0
Q ss_pred HHHHhccChHHHHHHHHHHhccCCCCC----CHHHHHHHHHHHHcCCChhHHHHHHHHHHHC----C-CCC-CHHHHHHH
Q 037477 238 VLKELRIYPVKALGFFRWVGEHSGYKH----NTITYNGILRVLARHESVRDFWNVVEEMKKE----G-YEM-DIDTYIKI 307 (639)
Q Consensus 238 ~l~~~~~~~~~A~~~f~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g-~~p-~~~~~~~l 307 (639)
.+....+++++|+..|+...+...-.+ ...++..+...|...|+++.|...+++..+. + ..+ ...+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 334446888999999988753322122 3467888888999999999999988887652 1 111 25578888
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCC-CChhhHHHHHHHHHcc
Q 037477 308 SRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNS-LSKSVYDGIHRALTKL 386 (639)
Q Consensus 308 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~ 386 (639)
...|...|++++|++.|++..+. +.. .+.. ....++..+..+|...
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~---------------~~~------------------~~~~~~~~~~~~~lg~~y~~~ 235 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALEL---------------AMD------------------IQNDRFIAISLLNIANSYDRS 235 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---------------HHH------------------TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHH---------------HHH------------------cCCHHHHHHHHHHHHHHHHHC
Confidence 88999999999999998877531 000 0000 0123466677777888
Q ss_pred CChhHHHHHHHHHHH-----CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---C-CHHHHHHHHHHHHHcC
Q 037477 387 GRFDEAEKMMKAMKN-----AGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCI---P-DIKTWTILIQGHCAAN 457 (639)
Q Consensus 387 g~~~~A~~~~~~m~~-----~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---p-~~~t~~~li~~~~~~g 457 (639)
|++++|.+.+++..+ .. +....++..+...|.+.|++++|...+++..+.... | ....+..+...|...|
T Consensus 236 ~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~ 314 (378)
T 3q15_A 236 GDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETV 314 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSC
T ss_pred CCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 888888888877765 22 222455666667777777777777777776543111 1 1233444444445555
Q ss_pred C---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 037477 458 E---VDRALLCFAKMMEKNYDAD-ADLLDVLINGFLSQKRVNGAYKLLVEMI 505 (639)
Q Consensus 458 ~---~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 505 (639)
+ +.+|...+++ .+..++ ...+..+...|...|++++|...|+...
T Consensus 315 ~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 315 DERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp CHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5 4445444443 211111 2234445555666666666666665544
No 86
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.94 E-value=4.2e-08 Score=105.87 Aligned_cols=166 Identities=12% Similarity=0.077 Sum_probs=112.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHH
Q 037477 300 DIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGI 379 (639)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 379 (639)
+...|+.+...|.+.|++++|++.|++..+. .|+ +...+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~------------------------------------~~~a~~nL 49 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPE------------------------------------FAAAHSNL 49 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSC------------------------------------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC------------------------------------CHHHHHHH
Confidence 3556666666677777777777776665442 111 22345556
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 037477 380 HRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEV 459 (639)
Q Consensus 380 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~ 459 (639)
..+|.+.|++++|++.|++..+.. +-+...|..+..+|...|++++|++.|++..+.... +...|+.+...|...|++
T Consensus 50 g~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~ 127 (723)
T 4gyw_A 50 ASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNI 127 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCH
Confidence 666777777777777777766653 334667777777777778888888877777765432 566777777788888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 037477 460 DRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIE 506 (639)
Q Consensus 460 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (639)
++|++.|++.++.. +-+...+..+..+|...|++++|.+.+++..+
T Consensus 128 ~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 128 PEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 88888888777764 33566777777788888888877777776554
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.91 E-value=1.9e-07 Score=88.30 Aligned_cols=247 Identities=12% Similarity=0.050 Sum_probs=142.2
Q ss_pred HHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCC
Q 037477 309 RQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGR 388 (639)
Q Consensus 309 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 388 (639)
+-..-.|.+..++.-...+.. ..+......+.+++...+..+. .....|....+..+.. |...+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~-----------~~~~~~~~~a~~~la~-~~~~~- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQS-----------QDPTSKLGKVLDLYVQ-FLDTK- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCC-----------CCSSSTTHHHHHHHHH-HHTTT-
T ss_pred HHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCcc-----------CCCCCHHHHHHHHHHH-Hhccc-
Confidence 334557888888874443322 1222333334455555554321 1111222223333333 22322
Q ss_pred hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 037477 389 FDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGC-IPDIKTWTILIQGHCAANEVDRALLCFA 467 (639)
Q Consensus 389 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~t~~~li~~~~~~g~~~~a~~~~~ 467 (639)
|...|++..+.+ .++..++..+..++...|++++|++++.+....|. .-+...+..++..+.+.|+.+.|.+.++
T Consensus 85 ---a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~ 160 (310)
T 3mv2_B 85 ---NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFD 160 (310)
T ss_dssp ---CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 566677666554 45555556777777888888888888887766553 1255677777788888888888888888
Q ss_pred HHHHcCCCC-----CHHHHHHHHHH--HHc--CCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037477 468 KMMEKNYDA-----DADLLDVLING--FLS--QKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLR 538 (639)
Q Consensus 468 ~m~~~g~~~-----~~~~~~~li~~--~~~--~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 538 (639)
+|.+. .| +..+...|..+ ... .+++.+|+.+|+++.+. .|+..+-..++.++.+.|++++|.+.++
T Consensus 161 ~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 161 NYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHH
Confidence 88765 44 24555555544 222 33788888888887654 3442333344446777888888888887
Q ss_pred HHHhC-----CC---CC-ChHhHHHHH---hhcCCHHHHHHHHHHhhcCCCCCHHH
Q 037477 539 LMKKQ-----NY---PP-FPEPFVQYI---SKFGTVEDASEFLKALSVKEYPSSAA 582 (639)
Q Consensus 539 ~m~~~-----~~---~p-~~~~~~~ll---~~~g~~~~a~~~~~~~~~~~~~~~~~ 582 (639)
.+.+. .- .| +..++..++ ...|+ +|.++++++.+..|.++.+
T Consensus 236 ~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 236 LLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 65542 00 13 334443442 23454 7777777777777666654
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.89 E-value=1.2e-07 Score=78.70 Aligned_cols=128 Identities=15% Similarity=0.160 Sum_probs=63.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 037477 411 YSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLS 490 (639)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (639)
|..+...+...|++++|..+|+++.+.+. .+...+..+...+...|++++|...++++.+.+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 33444444455555555555555444322 134444445555555555555555555555443 2234444555555555
Q ss_pred CCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 491 QKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 491 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
.|++++|..+++++.+.. ..+...+..+...+.+.|++++|.+.++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 555555555555554431 12344455555555555555555555555544
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.88 E-value=2.3e-07 Score=77.04 Aligned_cols=130 Identities=17% Similarity=0.205 Sum_probs=111.4
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037477 375 VYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHC 454 (639)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~ 454 (639)
.+..+...+...|++++|.++++++.+.+ +.+...+..+...+...|++++|...|+++.+.+. .+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHH
Confidence 56778888999999999999999988764 44677888889999999999999999999887653 36778888999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 037477 455 AANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 455 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (639)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...|+++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999999998875 446778888899999999999999999988765
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.86 E-value=8.4e-07 Score=83.90 Aligned_cols=254 Identities=11% Similarity=0.010 Sum_probs=149.3
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCc
Q 037477 274 RVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPD 353 (639)
Q Consensus 274 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 353 (639)
+-.--.|++..++.-...+.. ......-.-+.++|...|++... ..-.|....+..+...+. .+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~~-~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFLD-TK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHHT-TT---
T ss_pred HHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHhc-cc---
Confidence 344556788777763322221 22223333445677777766531 112233333333333322 11
Q ss_pred hhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCC-CCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 037477 354 LGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGF-EPDNITYSQVIFGLCKAGRFEDACNVLD 432 (639)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~ 432 (639)
+...++++...+ .++...+..+..++...|++++|++++.+....|. .-+...+..++..+.+.|+.+.|.+.++
T Consensus 85 ---a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~ 160 (310)
T 3mv2_B 85 ---NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFD 160 (310)
T ss_dssp ---CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 233344443333 34444555677788888888888888888765542 1245667777888888888888888888
Q ss_pred HHHHCCCCC-----CHHHHHHHHHH--HHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 037477 433 EMEENGCIP-----DIKTWTILIQG--HCAAN--EVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVE 503 (639)
Q Consensus 433 ~m~~~~~~p-----~~~t~~~li~~--~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 503 (639)
+|.+. .| +..+...+..+ ....| +..+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.
T Consensus 161 ~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 161 NYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88764 35 24555666656 33334 788888888887654 35534444555578888888888888886
Q ss_pred HHHhCC----C---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHH
Q 037477 504 MIEKVR----L---RP-WQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQY 555 (639)
Q Consensus 504 m~~~~~----~---~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 555 (639)
+.+.+. . .| +..+...+|......|+ +|.+++.++.+ ..|+......+
T Consensus 237 l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp~i~d~ 292 (310)
T 3mv2_B 237 LLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEHAFIKHH 292 (310)
T ss_dssp HHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCHHHHHH
T ss_pred HHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCChHHHHH
Confidence 654310 0 13 34555455555555676 77888888877 44665544444
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.84 E-value=2.8e-07 Score=88.67 Aligned_cols=205 Identities=9% Similarity=-0.061 Sum_probs=136.0
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHH
Q 037477 388 RFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEEN----GCIPD-IKTWTILIQGHCAANEVDRA 462 (639)
Q Consensus 388 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~t~~~li~~~~~~g~~~~a 462 (639)
++++|...|.+. ...|...|++++|...|.+..+. |-.++ ..+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 367777776665 34566778888888888776542 21111 45778888888888888888
Q ss_pred HHHHHHHHHcCCC-CC----HHHHHHHHHHHHcC-CChhHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHH
Q 037477 463 LLCFAKMMEKNYD-AD----ADLLDVLINGFLSQ-KRVNGAYKLLVEMIEKVRLRPW----QATFKTLIEKLLGARRLEE 532 (639)
Q Consensus 463 ~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~ 532 (639)
...+++.++.... .+ ..+++.+...|... |++++|+..|++..+...-..+ ..+|..+...+.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 8888877663110 11 34677778888886 9999999998887654211111 3467788888899999999
Q ss_pred HHHHHHHHHhCCCCCChH------hH---HHHHhhcCCHHHHHHHHHHhhcCCCCCHH-----HHHHHHHHHH--hcCCH
Q 037477 533 AMNLLRLMKKQNYPPFPE------PF---VQYISKFGTVEDASEFLKALSVKEYPSSA-----AYLQVFESFF--NEGRH 596 (639)
Q Consensus 533 A~~~~~~m~~~~~~p~~~------~~---~~ll~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~l~~~~~--~~g~~ 596 (639)
|+..+++..+........ .+ ..++...|++++|...+++..+..|.... .+..++.+|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 999999888744322211 12 22235679999999999988876443322 3445566665 45789
Q ss_pred HHHHHHHhhCC
Q 037477 597 YEAKDLLYKCP 607 (639)
Q Consensus 597 ~~A~~~~~~m~ 607 (639)
++|++.++++.
T Consensus 257 ~~A~~~~~~~~ 267 (292)
T 1qqe_A 257 SEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHHhccCC
Confidence 99999998864
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.80 E-value=7.8e-08 Score=90.94 Aligned_cols=190 Identities=9% Similarity=-0.029 Sum_probs=126.5
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-C-CCHH
Q 037477 405 EPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPD---IKTWTILIQGHCAANEVDRALLCFAKMMEKNY-D-ADAD 479 (639)
Q Consensus 405 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~-~~~~ 479 (639)
+.+...+-.+...+.+.|++++|...|+++.+.... + ...+..+..+|.+.|++++|...|++.++... . ....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 345667777888899999999999999999886532 2 56788888999999999999999999998632 1 2245
Q ss_pred HHHHHHHHHHc--------CCChhHHHHHHHHHHHhCCCCCCHHHH---------------HHHHHHHHhcCCHHHHHHH
Q 037477 480 LLDVLINGFLS--------QKRVNGAYKLLVEMIEKVRLRPWQATF---------------KTLIEKLLGARRLEEAMNL 536 (639)
Q Consensus 480 ~~~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~~p~~~~~---------------~~li~~~~~~g~~~~A~~~ 536 (639)
.+..+..++.. .|++++|...|++..+.+.-.+..... ..+...|.+.|++++|+..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 66677778888 999999999999998874433332211 3445666777777777777
Q ss_pred HHHHHhCCCCCChH----hH---HHHHhhc----------CCHHHHHHHHHHhhcCCCCCH---HHHHHHHHHHHhcCCH
Q 037477 537 LRLMKKQNYPPFPE----PF---VQYISKF----------GTVEDASEFLKALSVKEYPSS---AAYLQVFESFFNEGRH 596 (639)
Q Consensus 537 ~~~m~~~~~~p~~~----~~---~~ll~~~----------g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~ 596 (639)
|+++.+.. |+.. .+ ...+... |++++|...++++.+..|.+. ..+..+...+.+.|++
T Consensus 171 ~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 171 YEAVFDAY--PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp HHHHHHHC--TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHC--CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHh
Confidence 77776532 3211 11 1111222 667777777777776655553 3333444444444443
Q ss_pred H
Q 037477 597 Y 597 (639)
Q Consensus 597 ~ 597 (639)
+
T Consensus 249 ~ 249 (261)
T 3qky_A 249 E 249 (261)
T ss_dssp H
T ss_pred h
Confidence 3
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.79 E-value=2.2e-07 Score=89.40 Aligned_cols=205 Identities=10% Similarity=-0.055 Sum_probs=146.5
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHC----CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHH
Q 037477 376 YDGIHRALTKLGRFDEAEKMMKAMKNA----GFEPD-NITYSQVIFGLCKAGRFEDACNVLDEMEENGCI-PD----IKT 445 (639)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~t 445 (639)
|......|...|++++|.+.|.+..+. |-+++ ..+|+.+...|.+.|++++|+..|++..+.... .+ ..+
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 119 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444566788999999999999887653 32222 468899999999999999999999987653111 11 357
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCH-----
Q 037477 446 WTILIQGHCAA-NEVDRALLCFAKMMEKNYD-AD----ADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQ----- 514 (639)
Q Consensus 446 ~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~----- 514 (639)
++.+...|... |++++|...|++.++.... .+ ..++..+...|.+.|++++|...|++..+...-.+..
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 88899999996 9999999999998874211 11 3568888999999999999999999998752222221
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH------hHHHHH-----hhcCCHHHHHHHHHHhhcCCCCCHHH
Q 037477 515 ATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPE------PFVQYI-----SKFGTVEDASEFLKALSVKEYPSSAA 582 (639)
Q Consensus 515 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~~~ll-----~~~g~~~~a~~~~~~~~~~~~~~~~~ 582 (639)
..|..+..++...|++++|...+++..+ +.|+.. .+..+. ...+++++|...|+++....|.....
T Consensus 200 ~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~ 276 (292)
T 1qqe_A 200 DYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITI 276 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHH
Confidence 2567778889999999999999999876 334322 122222 13467888888887776654433333
No 94
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.74 E-value=9.7e-07 Score=81.20 Aligned_cols=185 Identities=9% Similarity=0.034 Sum_probs=117.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHH
Q 037477 408 NITYSQVIFGLCKAGRFEDACNVLDEMEENGCI-PD-IKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADA--DLLDV 483 (639)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~ 483 (639)
...+..+...+...|++++|...|+++.+.... |. ...+..+..+|.+.|++++|...|+++++....... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 445556677788889999999999988875422 11 356777888888999999999999988876422111 13333
Q ss_pred HHHHHHc------------------CCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 037477 484 LINGFLS------------------QKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNY 545 (639)
Q Consensus 484 li~~~~~------------------~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 545 (639)
+..++.. .|++++|...|+++.+.+.-.+. .+..... .+. +...+..
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~--a~~a~~~----l~~------~~~~~~~--- 148 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQY--TTDATKR----LVF------LKDRLAK--- 148 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTT--HHHHHHH----HHH------HHHHHHH---
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChh--HHHHHHH----HHH------HHHHHHH---
Confidence 3444443 45566666666666654222222 1111100 000 0000000
Q ss_pred CCChHhHHHHHhhcCCHHHHHHHHHHhhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHhhCCcc
Q 037477 546 PPFPEPFVQYISKFGTVEDASEFLKALSVKEYPSS---AAYLQVFESFFNEGRHYEAKDLLYKCPHH 609 (639)
Q Consensus 546 ~p~~~~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 609 (639)
.......++...|++++|+..|+++.+..|.++ ..+..+..+|.+.|++++|.+.++++...
T Consensus 149 --~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 149 --YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp --HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 001223445678999999999999998877665 67889999999999999999999986443
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.73 E-value=7.1e-07 Score=84.24 Aligned_cols=175 Identities=10% Similarity=0.029 Sum_probs=134.9
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC-HHHH
Q 037477 372 SKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPD---NITYSQVIFGLCKAGRFEDACNVLDEMEENGCI-PD-IKTW 446 (639)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~-~~t~ 446 (639)
+...+-.....+.+.|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|...|++..+.... |. ...+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 34456667778889999999999999998763 223 567888889999999999999999999886421 22 4567
Q ss_pred HHHHHHHHH--------cCCHHHHHHHHHHHHHcCCCCCHHHH-----------------HHHHHHHHcCCChhHHHHHH
Q 037477 447 TILIQGHCA--------ANEVDRALLCFAKMMEKNYDADADLL-----------------DVLINGFLSQKRVNGAYKLL 501 (639)
Q Consensus 447 ~~li~~~~~--------~g~~~~a~~~~~~m~~~g~~~~~~~~-----------------~~li~~~~~~g~~~~A~~~~ 501 (639)
..+..++.. .|++++|...|++.++.... +.... ..+...|.+.|++++|...|
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 778888888 99999999999999986422 22222 45577899999999999999
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCChH
Q 037477 502 VEMIEKVRLRP-WQATFKTLIEKLLGA----------RRLEEAMNLLRLMKKQNYPPFPE 550 (639)
Q Consensus 502 ~~m~~~~~~~p-~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~~ 550 (639)
+.+.+.+.-.+ ....+..+..+|... |++++|...++++.+. .|+..
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~ 229 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDSP 229 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTCT
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCCh
Confidence 99988743333 245677777888766 8999999999999873 35543
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.65 E-value=1.3e-06 Score=79.30 Aligned_cols=107 Identities=12% Similarity=0.106 Sum_probs=57.5
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCCC-HHhHHH----------------HHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 037477 379 IHRALTKLGRFDEAEKMMKAMKNAGFEPD-NITYSQ----------------VIFGLCKAGRFEDACNVLDEMEENGCIP 441 (639)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~~~~p 441 (639)
....+...|++++|...|++..+. .|+ ...|.. +..+|.+.|++++|+..|++..+....
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~- 86 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN- 86 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-
Confidence 344566778888888888887765 232 333444 445555555555555555555544322
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037477 442 DIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFL 489 (639)
Q Consensus 442 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 489 (639)
+...|..+...|...|++++|...|++.++.. +-+...+..+...|.
T Consensus 87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 87 NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYY 133 (208)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 34455555555555555555555555555543 223444444444443
No 97
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.60 E-value=4.3e-07 Score=79.89 Aligned_cols=162 Identities=13% Similarity=0.025 Sum_probs=104.5
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HH
Q 037477 376 YDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQG-HC 454 (639)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~-~~ 454 (639)
+......+...|++++|...|++..+.. +.+...+..+...+...|++++|...|++..... |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 4445566777888888888888765542 3356677778888888888888888888776543 344333222111 11
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037477 455 AANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAM 534 (639)
Q Consensus 455 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 534 (639)
..+....|...+++..+.. +-+...+..+...+...|++++|...|+++.+...-..+...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2222234667777777653 335677777777788888888888888877654211122456777777777778877777
Q ss_pred HHHHHHH
Q 037477 535 NLLRLMK 541 (639)
Q Consensus 535 ~~~~~m~ 541 (639)
..|++..
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777654
No 98
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.60 E-value=1e-06 Score=84.45 Aligned_cols=165 Identities=15% Similarity=0.038 Sum_probs=103.0
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHH
Q 037477 373 KSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTI-LIQ 451 (639)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~-li~ 451 (639)
...+..+...+...|++++|...|++..+.. +-+...+..+...+...|++++|...+++..... |+...... ...
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~ 193 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHH
Confidence 3445556666677777777777777776653 3355666677777777777777777777765543 44332222 222
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 037477 452 GHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLE 531 (639)
Q Consensus 452 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 531 (639)
.+...++.+.|...+++..+.. +.+...+..+...|...|++++|...|.++.+...-..+...+..+...|...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 3455566666777777766654 345666677777777777777777777777665221112456667777777777777
Q ss_pred HHHHHHHHHH
Q 037477 532 EAMNLLRLMK 541 (639)
Q Consensus 532 ~A~~~~~~m~ 541 (639)
+|...+++..
T Consensus 273 ~a~~~~r~al 282 (287)
T 3qou_A 273 ALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 7776666543
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.59 E-value=7.5e-07 Score=96.52 Aligned_cols=153 Identities=11% Similarity=-0.032 Sum_probs=89.6
Q ss_pred HccCChhHHHHHHHHHH--------HCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 037477 384 TKLGRFDEAEKMMKAMK--------NAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCA 455 (639)
Q Consensus 384 ~~~g~~~~A~~~~~~m~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~ 455 (639)
...|++++|.+.+++.. +.. +.+...+..+...|...|++++|...|++..+.... +...|..+...|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 55566666666666665 221 233455566666666666666666666666654322 45566666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037477 456 ANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMN 535 (639)
Q Consensus 456 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 535 (639)
.|++++|.+.|++.++.. +-+...+..+..+|.+.|++++ ...|++..+.. .-+...|..+..++.+.|++++|++
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666666666653 2244555566666666666666 66666665541 1134455666666666666666666
Q ss_pred HHHHHHh
Q 037477 536 LLRLMKK 542 (639)
Q Consensus 536 ~~~~m~~ 542 (639)
.|++..+
T Consensus 556 ~~~~al~ 562 (681)
T 2pzi_A 556 TLDEVPP 562 (681)
T ss_dssp HHHTSCT
T ss_pred HHHhhcc
Confidence 6665554
No 100
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.59 E-value=4.7e-06 Score=76.53 Aligned_cols=167 Identities=10% Similarity=0.062 Sum_probs=107.4
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHCCCC-C-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCH-HHHHHHH
Q 037477 375 VYDGIHRALTKLGRFDEAEKMMKAMKNAGFE-P-DNITYSQVIFGLCKAGRFEDACNVLDEMEENGCI-PDI-KTWTILI 450 (639)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~-~t~~~li 450 (639)
.+..+...+.+.|++++|...|+.+.+.... | ....+..+..+|.+.|++++|+..|+++.+.... +.. ..+..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 3445666788899999999999999876321 1 1356777889999999999999999999876433 111 2344444
Q ss_pred HHHHH------------------cCCHHHHHHHHHHHHHcCCCCCH-HHH-----------------HHHHHHHHcCCCh
Q 037477 451 QGHCA------------------ANEVDRALLCFAKMMEKNYDADA-DLL-----------------DVLINGFLSQKRV 494 (639)
Q Consensus 451 ~~~~~------------------~g~~~~a~~~~~~m~~~g~~~~~-~~~-----------------~~li~~~~~~g~~ 494 (639)
.++.. .|+.++|...|+++++.. |+. ..+ ..+...|.+.|++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~ 163 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAW 163 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 44443 578999999999998863 322 121 1233445566666
Q ss_pred hHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 037477 495 NGAYKLLVEMIEKVRLRPW-QATFKTLIEKLLGARRLEEAMNLLRLMKKQ 543 (639)
Q Consensus 495 ~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 543 (639)
++|...|+.+.+.+.-.|. ...+..+..+|.+.|+.++|.+.++.+...
T Consensus 164 ~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 164 VAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 6666666666655221111 134555666666666666666666666553
No 101
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.56 E-value=5.1e-06 Score=75.43 Aligned_cols=140 Identities=16% Similarity=0.058 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHH
Q 037477 391 EAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAAN----EVDRALLCF 466 (639)
Q Consensus 391 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g----~~~~a~~~~ 466 (639)
+|.+.|++..+.| +...+..+-..|...+++++|+..|++..+.| +...+..+...|.. + +.++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3555666665543 45556666666666666666666666666543 44555555555555 4 666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh----cCCHHHHHH
Q 037477 467 AKMMEKNYDADADLLDVLINGFLS----QKRVNGAYKLLVEMIEKVRLRPW---QATFKTLIEKLLG----ARRLEEAMN 535 (639)
Q Consensus 467 ~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~---~~~~~~li~~~~~----~g~~~~A~~ 535 (639)
++..+.| +...+..|-..|.. .+++++|..+|+...+. .|. ...+..|-..|.. .++.++|..
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 6665554 44455555555554 55666666666655433 221 3445555555554 455555555
Q ss_pred HHHHHHhC
Q 037477 536 LLRLMKKQ 543 (639)
Q Consensus 536 ~~~~m~~~ 543 (639)
.|++..+.
T Consensus 151 ~~~~A~~~ 158 (212)
T 3rjv_A 151 YFKGSSSL 158 (212)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 55555544
No 102
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.53 E-value=3.6e-06 Score=89.44 Aligned_cols=132 Identities=8% Similarity=-0.032 Sum_probs=80.0
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037477 373 KSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQG 452 (639)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~ 452 (639)
...+..+...|...|++++|.+.+++..+.. +.+...|..+...|...|++++|...|++..+.... +...+..+...
T Consensus 23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 100 (568)
T 2vsy_A 23 FVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE-HPGIALWLGHA 100 (568)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 4555666666666666666666666666543 234555666666666666666666666666554322 45566666666
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC---CChhHHHHHHHHHHHh
Q 037477 453 HCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQ---KRVNGAYKLLVEMIEK 507 (639)
Q Consensus 453 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~ 507 (639)
|.+.|++++|.+.+++..+.. +.+...+..+...+... |++++|...+++..+.
T Consensus 101 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 101 LEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 666666666666666666553 23455566666666666 6666666666666554
No 103
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.51 E-value=9e-07 Score=75.43 Aligned_cols=143 Identities=13% Similarity=0.041 Sum_probs=102.7
Q ss_pred HHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 037477 381 RALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVD 460 (639)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~ 460 (639)
..+...|++++|+..+....... +-+...+-.+...|.+.|++++|++.|++..+.... +..+|..+...|...|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchH
Confidence 34556678888888887765431 122445667788888999999999999988876543 6788888888999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHH-HHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 037477 461 RALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKL-LVEMIEKVRLRP-WQATFKTLIEKLLGARR 529 (639)
Q Consensus 461 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~~~~~p-~~~~~~~li~~~~~~g~ 529 (639)
+|...|++.++.. +-+...+..+...|.+.|++++|.+. ++...+. .| +...|......+...|+
T Consensus 83 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l---~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL---FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH---STTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHhCc
Confidence 9999999888874 33677888888888888888776655 4666654 34 34566666666665553
No 104
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.51 E-value=7.2e-06 Score=74.21 Aligned_cols=188 Identities=12% Similarity=-0.001 Sum_probs=121.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 037477 303 TYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRA 382 (639)
Q Consensus 303 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 382 (639)
.+-.....+...|++++|+..|+...+. .|+......... ... . ..........+..+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~----~~~-~---------------~~~~~~~~~~lg~~ 63 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTN----VDK-N---------------SEISSKLATELALA 63 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHH----SCT-T---------------SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhh----hcc-h---------------hhhhHHHHHHHHHH
Confidence 3344445566778888888888877653 232221110000 000 0 00112234457888
Q ss_pred HHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH--H
Q 037477 383 LTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEV--D 460 (639)
Q Consensus 383 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~--~ 460 (639)
|.+.|++++|...|++..+.. +-+...|..+...|...|++++|...|++..+.... +...|..+...|...|+. .
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~ 141 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKK 141 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999998875 456888999999999999999999999999987543 678888888888766543 3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHH
Q 037477 461 RALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKT 519 (639)
Q Consensus 461 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ 519 (639)
.+...++.... ..|....+..+-.++...|++++|...|++..+ +.|+......
T Consensus 142 ~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~---l~P~~~~~~~ 195 (208)
T 3urz_A 142 KLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL---RFPSTEAQKT 195 (208)
T ss_dssp HHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT---TSCCHHHHHH
T ss_pred HHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCHHHHHH
Confidence 44555554431 122222333344456667889999999998864 4677554443
No 105
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.50 E-value=3.2e-06 Score=91.63 Aligned_cols=170 Identities=15% Similarity=0.006 Sum_probs=98.6
Q ss_pred CchhHHHHHHHHHHh-------cCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH
Q 037477 352 PDLGLVFRVANKYES-------LGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRF 424 (639)
Q Consensus 352 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 424 (639)
.+.+.+...++.... ...+.+...+..+..+|...|++++|.+.|++..+.. +.+...|..+..+|...|++
T Consensus 405 ~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~ 483 (681)
T 2pzi_A 405 SQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDY 483 (681)
T ss_dssp CCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCH
T ss_pred cCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCH
Confidence 345555555555541 1112234456666666666777777777776666543 33455666666666677777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 037477 425 EDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEM 504 (639)
Q Consensus 425 ~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 504 (639)
++|...|++..+.... +...|..+..+|.+.|++++ .+.|++.++.+ +-+...|..+..+|.+.|++++|...|++.
T Consensus 484 ~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 560 (681)
T 2pzi_A 484 DSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEV 560 (681)
T ss_dssp HHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 7777777766654422 44566666666667777766 66676666654 335556666666677777777777776655
Q ss_pred HHhCCCCCC-HHHHHHHHHHHHhcC
Q 037477 505 IEKVRLRPW-QATFKTLIEKLLGAR 528 (639)
Q Consensus 505 ~~~~~~~p~-~~~~~~li~~~~~~g 528 (639)
.+ +.|+ ...|..+..++...|
T Consensus 561 l~---l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 561 PP---TSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp CT---TSTTHHHHHHHHHHHTC---
T ss_pred cc---cCcccHHHHHHHHHHHHccC
Confidence 43 3444 344545555554433
No 106
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.48 E-value=5.1e-06 Score=80.47 Aligned_cols=209 Identities=14% Similarity=0.029 Sum_probs=132.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C-CCC--HHHHHH
Q 037477 414 VIFGLCKAGRFEDACNVLDEMEEN----GCIP-DIKTWTILIQGHCAANEVDRALLCFAKMMEKN--Y-DAD--ADLLDV 483 (639)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g--~-~~~--~~~~~~ 483 (639)
....|...|++++|...|.+..+. +-.+ -..+|+.+...|...|++++|...+++.++.- . .+. ..++..
T Consensus 42 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~ 121 (307)
T 2ifu_A 42 AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDR 121 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 345677788888888888876542 1100 13477788888888899988888888776531 1 111 345667
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCChH-hHHH
Q 037477 484 LINGFLSQKRVNGAYKLLVEMIEKVRLRPW----QATFKTLIEKLLGARRLEEAMNLLRLMKKQ----NYPPFPE-PFVQ 554 (639)
Q Consensus 484 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~-~~~~ 554 (639)
+...|.. |++++|+..|++..+...-..+ ..++..+...|.+.|++++|++.+++..+. +..+... .+..
T Consensus 122 lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (307)
T 2ifu_A 122 AGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIA 200 (307)
T ss_dssp HHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 7777877 9999999998877653211111 456778888888999999999999887752 1111111 1211
Q ss_pred H---HhhcCCHHHHHHHHHHhhcCCCC---CH--HHHHHHHHHHHhcCCHHHHHHHHhhCCccccCChhHHHhhhccCCC
Q 037477 555 Y---ISKFGTVEDASEFLKALSVKEYP---SS--AAYLQVFESFFNEGRHYEAKDLLYKCPHHIRQDSKISLLFGSAKSN 626 (639)
Q Consensus 555 l---l~~~g~~~~a~~~~~~~~~~~~~---~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~~~~~~~ 626 (639)
+ ....|++++|...|++.. ..|. .. .....++.++ ..|+.+.+.+ +.+-+.-..-++|...+.......
T Consensus 201 ~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~-~~~~~~~~~ld~~~~~~~~~l~~~ 277 (307)
T 2ifu_A 201 QVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR-VCRSPLVTYMDNDYAKLAISLKVP 277 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH-HTTSHHHHTSCHHHHHHHHTCCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH-HHhCchhhhhhHHHHHHHHhCCCC
Confidence 1 134599999999999888 5332 21 2344555555 5788877777 333333344567777666554443
No 107
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.48 E-value=8.3e-06 Score=78.94 Aligned_cols=202 Identities=10% Similarity=-0.012 Sum_probs=124.3
Q ss_pred cChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037477 244 IYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKL 323 (639)
Q Consensus 244 ~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l 323 (639)
++.++|.+++++..+... .. .+...+++++|...|... ...|...|++++|...
T Consensus 5 ~~~~eA~~~~~~a~k~~~--~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYLK--TS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHC--CC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHHcc--cc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 566788888887643211 11 011146777777777654 4567788999999988
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHC-
Q 037477 324 FEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNA- 402 (639)
Q Consensus 324 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 402 (639)
|.+..+. +.+.+ +.. .-..+|+.+..+|...|++++|...|++..+.
T Consensus 59 ~~~al~~---------------~~~~~--~~~---------------~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 106 (307)
T 2ifu_A 59 YLQEAEA---------------HANNR--SLF---------------HAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMY 106 (307)
T ss_dssp HHHHHHH---------------HHHTT--CHH---------------HHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH
T ss_pred HHHHHHH---------------HHHcC--CHH---------------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 8876531 11111 000 01235666778888889999998888876543
Q ss_pred ---CCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 037477 403 ---GFEPD--NITYSQVIFGLCKAGRFEDACNVLDEMEENGCIP-----DIKTWTILIQGHCAANEVDRALLCFAKMMEK 472 (639)
Q Consensus 403 ---g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 472 (639)
| .+. ..+++.+...|.. |++++|+..|++..+..... ...++..+...|...|++++|...|++.++.
T Consensus 107 ~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 184 (307)
T 2ifu_A 107 VENG-TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM 184 (307)
T ss_dssp HTTT-CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHcC-CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 111 3456667777777 88888888887765421100 1346667777777888888888877777652
Q ss_pred ----CCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 037477 473 ----NYDAD-ADLLDVLINGFLSQKRVNGAYKLLVEMI 505 (639)
Q Consensus 473 ----g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 505 (639)
+..+. ...+..+..++...|++++|...|++..
T Consensus 185 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 185 YKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 11111 1245555566666777777777777765
No 108
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.47 E-value=1.7e-05 Score=71.92 Aligned_cols=163 Identities=12% Similarity=0.030 Sum_probs=82.6
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHHHHH
Q 037477 372 SKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAG----RFEDACNVLDEMEENGCIPDIKTWT 447 (639)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~p~~~t~~ 447 (639)
+...+..+...|...+++++|.+.|++..+.| +...+..|-..|.. + ++++|...|++..+.| +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 34445555555555566666666666655543 34444555555554 4 5666666666655543 444555
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHc----CCChhHHHHHHHHHHHhCCCCCCHHHHH
Q 037477 448 ILIQGHCA----ANEVDRALLCFAKMMEKNYD-ADADLLDVLINGFLS----QKRVNGAYKLLVEMIEKVRLRPWQATFK 518 (639)
Q Consensus 448 ~li~~~~~----~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~ 518 (639)
.|...|.. .+++++|.+.|++..+.|.. .+...+..|-..|.. .+++++|..+|+...+. + .+...+.
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~--~~~~a~~ 166 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-S--RTGYAEY 166 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-S--CTTHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-C--CCHHHHH
Confidence 55555544 55566666666655554411 014444555555555 45566666666655443 1 1222344
Q ss_pred HHHHHHHhc-C-----CHHHHHHHHHHHHhCC
Q 037477 519 TLIEKLLGA-R-----RLEEAMNLLRLMKKQN 544 (639)
Q Consensus 519 ~li~~~~~~-g-----~~~~A~~~~~~m~~~~ 544 (639)
.|-..|... | +.++|...+++..+.|
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 444444332 2 5555555555555443
No 109
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.46 E-value=0.00011 Score=70.23 Aligned_cols=217 Identities=10% Similarity=0.036 Sum_probs=164.2
Q ss_pred ccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HHc--
Q 037477 385 KLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAG--RFEDACNVLDEMEENGCIPDIKTWTILIQGH----CAA-- 456 (639)
Q Consensus 385 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~----~~~-- 456 (639)
+....++|+++++.+...+ +-+...|+.--..+...| ++++++..++.+.....+ +..+|+.--..+ ...
T Consensus 45 ~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 45 AEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTT
T ss_pred cCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccc
Confidence 3344568999999998875 345667888888888888 999999999999987654 556666544444 455
Q ss_pred -CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChh--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----
Q 037477 457 -NEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVN--GAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARR---- 529 (639)
Q Consensus 457 -g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~---- 529 (639)
+++++++++++.+.+.. +-+..+|+.-.-.+.+.|.++ +++++++.+.+.. .-|...|+.-...+.+.|.
T Consensus 123 ~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp CCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchh
Confidence 78999999999999976 447888888777788888888 9999999999873 2356667665555666666
Q ss_pred --HHHHHHHHHHHHhCCCCCChH-hH---HHHHhhcCC-HHHHHHHHHHhhcCC---CCCHHHHHHHHHHHHhcCCHHHH
Q 037477 530 --LEEAMNLLRLMKKQNYPPFPE-PF---VQYISKFGT-VEDASEFLKALSVKE---YPSSAAYLQVFESFFNEGRHYEA 599 (639)
Q Consensus 530 --~~~A~~~~~~m~~~~~~p~~~-~~---~~ll~~~g~-~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A 599 (639)
++++++.++.+... .|+.. .+ ..++.+.|+ .+....+..++.+.. +.++..+..++++|.+.|+.++|
T Consensus 200 ~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 200 NTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 89999999998874 34433 22 334456666 444666777766543 77899999999999999999999
Q ss_pred HHHHhhCCc
Q 037477 600 KDLLYKCPH 608 (639)
Q Consensus 600 ~~~~~~m~~ 608 (639)
.+++++...
T Consensus 278 ~~~~~~l~~ 286 (306)
T 3dra_A 278 RTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999754
No 110
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.46 E-value=0.00018 Score=68.54 Aligned_cols=232 Identities=10% Similarity=0.030 Sum_probs=162.6
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCc
Q 037477 276 LARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFR--MMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPD 353 (639)
Q Consensus 276 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 353 (639)
..+....++|+++++.+.... +-+...|+.--..+...| ++++++++++.+.....+.- ..|+.--..
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y-~aW~~R~~i-------- 112 (306)
T 3dra_A 43 MKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY-QIWNYRQLI-------- 112 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC-HHHHHHHHH--------
T ss_pred HHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH-HHHHHHHHH--------
Confidence 334444578999999998874 335666888777788888 99999999998876422111 111110000
Q ss_pred hhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHH--HHHHHH
Q 037477 354 LGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFE--DACNVL 431 (639)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--~A~~~~ 431 (639)
+..++......+++++++++++.+.+.. +.+...|+--...+.+.|.++ ++++.+
T Consensus 113 ----------------------L~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~ 169 (306)
T 3dra_A 113 ----------------------IGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFV 169 (306)
T ss_dssp ----------------------HHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ----------------------HHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHH
Confidence 0000011111267899999999998875 557888888888888888888 999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhH-HHHHHHHH
Q 037477 432 DEMEENGCIPDIKTWTILIQGHCAANE------VDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNG-AYKLLVEM 504 (639)
Q Consensus 432 ~~m~~~~~~p~~~t~~~li~~~~~~g~------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m 504 (639)
+++.+.... |...|+.-...+.+.|. ++++++.+++++... +-|...|+-+-..+.+.|+... +..+..++
T Consensus 170 ~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~ 247 (306)
T 3dra_A 170 DKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQF 247 (306)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTT
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 999988765 88888877777777666 888999999998876 4588888888888888887444 44566555
Q ss_pred HHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 505 IEKV-RLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 505 ~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
.+.. .-..+...+..+.+.|.+.|+.++|.++++.+.+
T Consensus 248 ~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 248 VDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp EEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 4321 1123567788888888888888888888888765
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.45 E-value=2.4e-06 Score=81.83 Aligned_cols=133 Identities=17% Similarity=0.098 Sum_probs=82.0
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037477 405 EPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVL 484 (639)
Q Consensus 405 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 484 (639)
+.+...+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++..... |+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 334455566666677777777777777777665432 55666677777777777777777777766542 333322222
Q ss_pred -HHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 485 -INGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 485 -i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
...+...++.++|...+++..... ..+...+..+...+...|++++|++.+.++.+
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~--P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~ 247 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN--PEDAALATQLALQLHQVGRNEEALELLFGHLR 247 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 223455566666777776666541 22355666666667777777777777776665
No 112
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.44 E-value=8.2e-06 Score=70.46 Aligned_cols=128 Identities=9% Similarity=-0.051 Sum_probs=76.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037477 410 TYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFL 489 (639)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 489 (639)
.+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3455555666666666666666666554322 45666666666667777777777776666653 334566666666677
Q ss_pred cCCChhHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHH
Q 037477 490 SQKRVNGAYKLLVEMIEKVRLRPWQATF--KTLIEKLLGARRLEEAMNLLRLMK 541 (639)
Q Consensus 490 ~~g~~~~A~~~~~~m~~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~ 541 (639)
..|++++|...|++..+...- +...+ ..+...+.+.|++++|++.+....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPH--DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 777777777777776654222 22233 233333556677777777666543
No 113
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.44 E-value=4.1e-06 Score=73.51 Aligned_cols=164 Identities=12% Similarity=0.018 Sum_probs=107.8
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHh
Q 037477 268 TYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSIS 347 (639)
Q Consensus 268 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~ 347 (639)
.+..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|+..|+..... .|+...+ .+...+
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~-~~~~~~- 82 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYK-SLIAKL- 82 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHH-HHHHHH-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHH-HHHHHH-
Confidence 34556677888999999999999877653 446788899999999999999999999988654 2332211 111000
Q ss_pred hcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHH
Q 037477 348 SINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDA 427 (639)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 427 (639)
.+...+...+|...+++..+.. +.+...+..+...+...|++++|
T Consensus 83 ----------------------------------~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A 127 (176)
T 2r5s_A 83 ----------------------------------ELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEA 127 (176)
T ss_dssp ----------------------------------HHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred ----------------------------------HHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHH
Confidence 0011112233566666666543 33466777777777778888888
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 037477 428 CNVLDEMEENGCIP-DIKTWTILIQGHCAANEVDRALLCFAKMME 471 (639)
Q Consensus 428 ~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 471 (639)
...|+++.+....+ +...+..+...+...|+.++|...|++.+.
T Consensus 128 ~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 128 LELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 88877777654332 245677777777777777777777766543
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.44 E-value=5.7e-06 Score=87.86 Aligned_cols=93 Identities=13% Similarity=-0.006 Sum_probs=43.5
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-
Q 037477 378 GIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAA- 456 (639)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~- 456 (639)
.+..+|...|++++|.+.+++..+.. +.+...+..+...|.+.|++++|.+.|++..+.... +...+..+...+...
T Consensus 62 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~ 139 (568)
T 2vsy_A 62 RLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLC 139 (568)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhh
Confidence 34444444444555554444444432 223444444555555555555555555554443221 344444455555555
Q ss_pred --CCHHHHHHHHHHHHHc
Q 037477 457 --NEVDRALLCFAKMMEK 472 (639)
Q Consensus 457 --g~~~~a~~~~~~m~~~ 472 (639)
|+.++|.+.+++..+.
T Consensus 140 ~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 140 DWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp CCTTHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHhc
Confidence 5555555555555443
No 115
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.43 E-value=5.1e-05 Score=72.75 Aligned_cols=165 Identities=10% Similarity=-0.008 Sum_probs=118.9
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCC-CCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHH
Q 037477 378 GIHRALTKLGRFDEAEKMMKAMKNAGF-EPDN----ITYSQVIFGLCKAGRFEDACNVLDEMEENGCI-PD----IKTWT 447 (639)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~t~~ 447 (639)
..+..+...|++++|.+++++..+... .|+. ..+..+...+...|++++|+..|++..+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346778889999999999999876421 2221 12334666677778999999999998874222 22 33688
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHHh---CCCCCC-HHHH
Q 037477 448 ILIQGHCAANEVDRALLCFAKMMEK-----NYDAD-ADLLDVLINGFLSQKRVNGAYKLLVEMIEK---VRLRPW-QATF 517 (639)
Q Consensus 448 ~li~~~~~~g~~~~a~~~~~~m~~~-----g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~p~-~~~~ 517 (639)
.+...|...|++++|...++++.+. +..+. ..++..+...|.+.|++++|...+++..+. .+..+. ...|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8999999999999999999988851 21222 236778888899999999999998876643 122222 5678
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHh
Q 037477 518 KTLIEKLLGAR-RLEEAMNLLRLMKK 542 (639)
Q Consensus 518 ~~li~~~~~~g-~~~~A~~~~~~m~~ 542 (639)
..+-.+|.+.| .+++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88888888899 46899988887764
No 116
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.43 E-value=0.00012 Score=70.22 Aligned_cols=205 Identities=9% Similarity=-0.052 Sum_probs=140.8
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHH
Q 037477 261 GYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDT---YIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQ 337 (639)
Q Consensus 261 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ 337 (639)
...|+..+...+...+.-.- + .+.......+... +...+..+...|++++|..++++..+.. +...
T Consensus 41 ~~~~~~~~l~~i~~~l~~~~--~-------~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~--~~~~ 109 (293)
T 3u3w_A 41 AVYPSMDILQGIAAKLQIPI--I-------HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE--EYHP 109 (293)
T ss_dssp SCCCCHHHHHHHHHHHTCCT--H-------HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CCCH
T ss_pred CCCCCHHHHHHHHHHhCcCH--H-------HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc--cCCh
Confidence 34688888887777765431 1 1222222223333 3344677889999999999999987632 1111
Q ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCC-CC----HHhHH
Q 037477 338 DCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFE-PD----NITYS 412 (639)
Q Consensus 338 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~ 412 (639)
.....+ ..+..+...+...|++++|.+.|++..+.... ++ ..+++
T Consensus 110 ~~~~~~------------------------------~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 110 EFQQFL------------------------------QWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHH------------------------------HHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHH------------------------------HHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 100000 12344666777888999999999999874322 22 23688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHH
Q 037477 413 QVIFGLCKAGRFEDACNVLDEMEE----N-GCIPD-IKTWTILIQGHCAANEVDRALLCFAKMMEK----NYDAD-ADLL 481 (639)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~----~-~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~-~~~~ 481 (639)
.+...|...|++++|...|+++.+ . +..+. ..+|..+...|.+.|++++|...+++.++. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999999999999999999874 1 11122 247888999999999999999999988762 22222 5778
Q ss_pred HHHHHHHHcCCC-hhHHHHHHHHHHH
Q 037477 482 DVLINGFLSQKR-VNGAYKLLVEMIE 506 (639)
Q Consensus 482 ~~li~~~~~~g~-~~~A~~~~~~m~~ 506 (639)
..+..+|.+.|+ +++|...|++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 888899999995 6999999987654
No 117
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.43 E-value=0.00048 Score=71.05 Aligned_cols=373 Identities=10% Similarity=-0.012 Sum_probs=202.1
Q ss_pred CChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCC-hHHHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHhcC-chhh
Q 037477 107 NDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDS-LKQFWVTLRRMKED-HC-YIEEETYLSILGVLKKAK-KASD 182 (639)
Q Consensus 107 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~l~~~m~~~-g~-~~~~~t~~~ll~~~~~~~-~~~~ 182 (639)
++.+.+..+|+..... .|++..|..-+....+.+. .+.+..+|+..... |. ..+...|...+.-+.... ..++
T Consensus 28 ~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 7899999999988872 3799999998888877663 35567778776653 43 235566766665443211 1234
Q ss_pred HHHHHHHHHHHhhhccchhHHHHHHHHHhcCCchHHHHHHHhhccCcCCHHHHHHHHHHhccChHHHHHHHHHHhccCCC
Q 037477 183 LAALNQFHDGMVKEIAMDNVAKTLVDVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGY 262 (639)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~ 262 (639)
...+..+|+..+..... . ...+-..|.. ++.. ........++.........|..+++.+.....
T Consensus 105 ~~~vR~iy~rAL~~P~~-~-~~~lw~~Y~~----------fE~~---~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~- 168 (493)
T 2uy1_A 105 IEKIRNGYMRALQTPMG-S-LSELWKDFEN----------FELE---LNKITGKKIVGDTLPIFQSSFQRYQQIQPLIR- 168 (493)
T ss_dssp HHHHHHHHHHHHTSCCT-T-HHHHHHHHHH----------HHHH---HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhChhh-h-HHHHHHHHHH----------HHHH---hccccHHHHHHHHhHHHHHHHHHHHHHHHHHh-
Confidence 55677788888763211 1 1111111111 0000 00001111111111222334444443321000
Q ss_pred CCCHHHHHHHHHHHHcCCC-------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC
Q 037477 263 KHNTITYNGILRVLARHES-------VRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPS 335 (639)
Q Consensus 263 ~p~~~~~~~li~~~~~~g~-------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~ 335 (639)
..+...|...+.--...+. .+.+..+|+++.... +.+...|-..+..+.+.|+.++|..+|++.... |.
T Consensus 169 ~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~ 244 (493)
T 2uy1_A 169 GWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SD 244 (493)
T ss_dssp TCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CC
T ss_pred hccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CC
Confidence 0134466666654332211 345677898888753 557888888888889999999999999999876 44
Q ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHH
Q 037477 336 VQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVI 415 (639)
Q Consensus 336 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 415 (639)
...... .++.... .+.. +..+...+... ..+.+. +. .+ ......|...+
T Consensus 245 ~~~l~~---~y~~~~e--~~~~------------------~~~l~~~~~~~-~~~~~~-----~~-~~-~~~~~lw~~y~ 293 (493)
T 2uy1_A 245 GMFLSL---YYGLVMD--EEAV------------------YGDLKRKYSMG-EAESAE-----KV-FS-KELDLLRINHL 293 (493)
T ss_dssp SSHHHH---HHHHHTT--CTHH------------------HHHHHHHTC-----------------CH-HHHHHHHHHHH
T ss_pred cHHHHH---HHHhhcc--hhHH------------------HHHHHHHHHhh-ccchhh-----hh-cc-cccHHHHHHHH
Confidence 432221 1211110 0110 11121111000 000000 00 00 11124566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh
Q 037477 416 FGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCA-ANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRV 494 (639)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 494 (639)
..+.+.++++.|..+|++. +.. ..+...|......-.. .++.+.|..+|+...+.- +-+...+...++...+.|+.
T Consensus 294 ~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~ 370 (493)
T 2uy1_A 294 NYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDE 370 (493)
T ss_dssp HHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCH
Confidence 6666777788888888887 321 1244444432222222 236888888888887753 22344556667766777888
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 495 NGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 495 ~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
+.|..+|+.+. .....|...++.-...|+.+.+..+++++.+
T Consensus 371 ~~aR~l~er~~------k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 371 ENARALFKRLE------KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHSC------CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888888762 1356777777766677888888888877664
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.42 E-value=1.9e-05 Score=71.61 Aligned_cols=124 Identities=10% Similarity=-0.018 Sum_probs=64.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 037477 414 VIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKR 493 (639)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 493 (639)
+...+...|++++|...|++.. .|+...|..+...|...|++++|...+++..+.. +.+...+..+..+|...|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 3444445555555555555442 2445555555555555555555555555555543 2244455555555555555
Q ss_pred hhHHHHHHHHHHHhCCCC-------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 494 VNGAYKLLVEMIEKVRLR-------------P-WQATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 494 ~~~A~~~~~~m~~~~~~~-------------p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
+++|...|+...+...-. | ....+..+..+|.+.|++++|.+.+++..+
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555555555555431111 1 124455555566666666666666666655
No 119
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.41 E-value=0.00015 Score=74.86 Aligned_cols=340 Identities=13% Similarity=0.014 Sum_probs=198.4
Q ss_pred cChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCC-hhHHHHHHHHHHHC-CC-CCCHHHHHHHHHHHH----hcCC
Q 037477 244 IYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHES-VRDFWNVVEEMKKE-GY-EMDIDTYIKISRQFQ----KFRM 316 (639)
Q Consensus 244 ~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~-g~-~p~~~~~~~li~~~~----~~g~ 316 (639)
+..+.+..+|++... ..|+...|...+....+.++ .+....+|+..... |. ..+...|...+..+. ..++
T Consensus 28 ~~~e~~~~iferal~---~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLK---KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHST---TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 668889999988864 24799999998888877663 45677788877654 43 346778888877654 3467
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCC-----------CchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHc
Q 037477 317 MEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINN-----------PDLGLVFRVANKYESLGNSLSKSVYDGIHRALTK 385 (639)
Q Consensus 317 ~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 385 (639)
.+.+.++|+.........-...|......-...+. +....+..++......-...+...|...+.--..
T Consensus 105 ~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~ 184 (493)
T 2uy1_A 105 IEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEME 184 (493)
T ss_dssp HHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence 88899999999874322212222222211111000 0011112222222211001123355555444322
Q ss_pred cC--C-----hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 037477 386 LG--R-----FDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANE 458 (639)
Q Consensus 386 ~g--~-----~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~ 458 (639)
.+ - .+.+..+|+++.... +.+...|-..+.-+...|++++|..+|++.... ..+...|. .|+...+
T Consensus 185 ~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e 257 (493)
T 2uy1_A 185 NGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMD 257 (493)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTT
T ss_pred CCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcc
Confidence 21 1 234667888877653 455777888888888889999999999998877 22332222 2332221
Q ss_pred HHHHHHHHHHHHHcC---------CCC---CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHH--HHHHHH
Q 037477 459 VDRALLCFAKMMEKN---------YDA---DADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFK--TLIEKL 524 (639)
Q Consensus 459 ~~~a~~~~~~m~~~g---------~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~--~li~~~ 524 (639)
.++. ++.+.+.- ..+ ...+|...+..+.+.+..+.|..+|+.. +..+ .+...|. +.+...
T Consensus 258 ~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~i~~A~lE~~ 331 (493)
T 2uy1_A 258 EEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVFIYCAFIEYY 331 (493)
T ss_dssp CTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHHHHHHHHHHH
T ss_pred hhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHHHHHHHHHHH
Confidence 1111 33333210 011 1234555666666677899999999988 3212 2334443 333322
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCh----HhHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037477 525 LGARRLEEAMNLLRLMKKQNYPPFP----EPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAK 600 (639)
Q Consensus 525 ~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 600 (639)
. .++.+.|..+|+...+.- |+. ..|..+....|+.+.|..+|+.+. .....|...+..-...|+.+.+.
T Consensus 332 ~-~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r 404 (493)
T 2uy1_A 332 A-TGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFR 404 (493)
T ss_dssp H-HCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHH
T ss_pred H-CCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHH
Confidence 2 236889999999887642 332 223444467789999999998873 35777888887777789999888
Q ss_pred HHHhhC
Q 037477 601 DLLYKC 606 (639)
Q Consensus 601 ~~~~~m 606 (639)
++++++
T Consensus 405 ~v~~~~ 410 (493)
T 2uy1_A 405 ELVDQK 410 (493)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888775
No 120
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.39 E-value=1.9e-06 Score=82.30 Aligned_cols=193 Identities=10% Similarity=-0.020 Sum_probs=114.8
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037477 407 DNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLIN 486 (639)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 486 (639)
+...+..+...+.+.|++++|...|++..+.... +...|..+...|.+.|++++|...+++.++.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3455666667777777777777777777665422 56677777777777778888877777777653 335666777777
Q ss_pred HHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHh--hcCCHHH
Q 037477 487 GFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYIS--KFGTVED 564 (639)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~--~~g~~~~ 564 (639)
+|...|++++|...|+...+...-.+. .+...+....+. .++.. +..........+.. +...+. ..|+.++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~--~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~-i~~~l~~l~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRL--NFGDDIPSALRI---AKKKR-WNSIEERRIHQESE-LHSYLTRLIAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTC--CCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCH-HHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchh--hHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHH-HHHHHHHHHHHHHHH
Confidence 777888888888877776553111110 011111111111 11111 11122222222222 222221 2577888
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHhhCCc
Q 037477 565 ASEFLKALSVKEYPSSAAYLQVFESFFNE-GRHYEAKDLLYKCPH 608 (639)
Q Consensus 565 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~ 608 (639)
|.+.++...+..|.+......+...+.+. +.+++|.++|.+...
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 88888887777776666666666666665 678889999987644
No 121
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.38 E-value=2.6e-06 Score=72.55 Aligned_cols=116 Identities=9% Similarity=-0.057 Sum_probs=95.3
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037477 375 VYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHC 454 (639)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~ 454 (639)
.+-.+...|.+.|++++|.+.|++..+.. +-+...|..+..+|.+.|++++|...|++..+.... +...|..+...|.
T Consensus 33 ~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~ 110 (150)
T 4ga2_A 33 KGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPT-QKDLVLKIAELLC 110 (150)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 45567889999999999999999998875 457889999999999999999999999999986533 6788999999999
Q ss_pred HcCCHHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 037477 455 AANEVDRALLC-FAKMMEKNYDADADLLDVLINGFLSQKR 493 (639)
Q Consensus 455 ~~g~~~~a~~~-~~~m~~~g~~~~~~~~~~li~~~~~~g~ 493 (639)
+.|+.++|.+. +++.++.. +-+..+|......+...|+
T Consensus 111 ~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 111 KNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 99998876655 58888764 3466777777666666664
No 122
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.35 E-value=1.9e-05 Score=64.01 Aligned_cols=95 Identities=17% Similarity=0.234 Sum_probs=43.7
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 037477 376 YDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCA 455 (639)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~ 455 (639)
+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...|+++.+... .+..++..+...|..
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHH
Confidence 3444444555555555555555544432 22334444444444555555555555544444321 133444444444444
Q ss_pred cCCHHHHHHHHHHHHHc
Q 037477 456 ANEVDRALLCFAKMMEK 472 (639)
Q Consensus 456 ~g~~~~a~~~~~~m~~~ 472 (639)
.|++++|...++++.+.
T Consensus 90 ~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 90 QGDYDEAIEYYQKALEL 106 (125)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh
Confidence 44444444444444443
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.35 E-value=1.9e-05 Score=68.14 Aligned_cols=129 Identities=14% Similarity=0.037 Sum_probs=106.2
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037477 375 VYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHC 454 (639)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~ 454 (639)
.+..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|...+++..+... .+...|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 46667888899999999999999988764 44688899999999999999999999999987653 36788999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHcCCChhHHHHHHHHHHH
Q 037477 455 AANEVDRALLCFAKMMEKNYDADADLLD--VLINGFLSQKRVNGAYKLLVEMIE 506 (639)
Q Consensus 455 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~ 506 (639)
..|++++|...+++..+.. +.+...+. .+...+...|++++|...+.....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999874 33455553 334447788999999999887643
No 124
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.33 E-value=2.8e-05 Score=70.40 Aligned_cols=127 Identities=7% Similarity=-0.070 Sum_probs=108.6
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 037477 376 YDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCA 455 (639)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~ 455 (639)
+..+...+...|++++|.+.|++.. .|+...|..+...|...|++++|...|++..+... .+...|..+...|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHH
Confidence 4456677889999999999998773 67889999999999999999999999999987653 367889999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCC--------------C-CHHHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 037477 456 ANEVDRALLCFAKMMEKNYD--------------A-DADLLDVLINGFLSQKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 456 ~g~~~~a~~~~~~m~~~g~~--------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (639)
.|++++|.+.|++..+.... | ....+..+..+|.+.|++++|...|+...+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 99999999999999985321 1 1267888889999999999999999998764
No 125
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.31 E-value=1.2e-05 Score=68.14 Aligned_cols=98 Identities=12% Similarity=-0.030 Sum_probs=65.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037477 408 NITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLING 487 (639)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 487 (639)
...+..+...+.+.|++++|...|++....... +...|..+..+|...|++++|...|++..+.. +-+...|..+-.+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 335556666677777777777777777665432 56667777777777777777777777777654 2345566666677
Q ss_pred HHcCCChhHHHHHHHHHHHh
Q 037477 488 FLSQKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~~~ 507 (639)
|...|++++|...|+...+.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777776654
No 126
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.31 E-value=9.3e-06 Score=72.88 Aligned_cols=158 Identities=14% Similarity=0.060 Sum_probs=104.3
Q ss_pred HccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCC
Q 037477 384 TKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEEN----GCIP-DIKTWTILIQGHCAANE 458 (639)
Q Consensus 384 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~t~~~li~~~~~~g~ 458 (639)
...|++++|.++++.+... .......+..+...|...|++++|...+++..+. +..+ ...++..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4568888888855555432 1234567778888888889999988888887651 1111 23567777788888899
Q ss_pred HHHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcC
Q 037477 459 VDRALLCFAKMMEK----NYDA--DADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW----QATFKTLIEKLLGAR 528 (639)
Q Consensus 459 ~~~a~~~~~~m~~~----g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g 528 (639)
+++|.+.+++..+. +-.+ ....+..+...+...|++++|...+++..+...-..+ ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 98888888877663 2111 1344666777888888888888888876643111112 234566777788888
Q ss_pred CHHHHHHHHHHHHh
Q 037477 529 RLEEAMNLLRLMKK 542 (639)
Q Consensus 529 ~~~~A~~~~~~m~~ 542 (639)
++++|.+.+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 88888888877654
No 127
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.30 E-value=5.2e-05 Score=72.71 Aligned_cols=165 Identities=10% Similarity=-0.043 Sum_probs=111.6
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH------HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HH
Q 037477 376 YDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDN------ITYSQVIFGLCKAGRFEDACNVLDEMEENGC---IPD--IK 444 (639)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~p~--~~ 444 (639)
+...+..+...|++++|.+.+....+.... .. ..+..+...+...|++++|...+++..+... .+. ..
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444666778888999998888877765322 21 1233455566777888888888888765321 122 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---cC-CCC--CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhC---CCCCC-H
Q 037477 445 TWTILIQGHCAANEVDRALLCFAKMME---KN-YDA--DADLLDVLINGFLSQKRVNGAYKLLVEMIEKV---RLRPW-Q 514 (639)
Q Consensus 445 t~~~li~~~~~~g~~~~a~~~~~~m~~---~g-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~p~-~ 514 (639)
+|+.+...|...|++++|...+++..+ .. ..+ ...++..+...|.+.|++++|...+++..+.. +.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 788888888888888888888888773 21 111 12567777888888888888888888765431 11111 5
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 037477 515 ATFKTLIEKLLGARRLEEA-MNLLRLMK 541 (639)
Q Consensus 515 ~~~~~li~~~~~~g~~~~A-~~~~~~m~ 541 (639)
.+|..+...|.+.|+.++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5777778888888888888 66676654
No 128
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.27 E-value=5.8e-05 Score=61.07 Aligned_cols=98 Identities=16% Similarity=0.206 Sum_probs=71.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037477 408 NITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLING 487 (639)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 487 (639)
...|..+...+...|++++|...|+++.+... .+..++..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 45667777777788888888888888776542 256677777777788888888888887777754 3456677777777
Q ss_pred HHcCCChhHHHHHHHHHHHh
Q 037477 488 FLSQKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~~~ 507 (639)
|...|++++|...|+++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 77788888888888777665
No 129
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.26 E-value=1.5e-05 Score=69.86 Aligned_cols=121 Identities=7% Similarity=0.022 Sum_probs=84.6
Q ss_pred HccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCCH--H
Q 037477 384 TKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQG-HCAANEV--D 460 (639)
Q Consensus 384 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~-~~~~g~~--~ 460 (639)
...|++++|...++...+.. +.+...|..+...|...|++++|...|++..+.... +...+..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchH
Confidence 45577788888887776654 446677777888888888888888888887765432 56667777777 6677777 8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 037477 461 RALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 461 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (639)
+|...+++..+.. +.+...+..+...|...|++++|...|+...+.
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 8888888877764 335666777777788888888888888877765
No 130
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.26 E-value=3e-05 Score=63.51 Aligned_cols=114 Identities=11% Similarity=0.073 Sum_probs=52.9
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 037477 376 YDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCA 455 (639)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~ 455 (639)
+..+...+...|++++|.+.|++..+.. +.+...+..+...+...|++++|...+++..+... .+...+..+...|..
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHHHHH
Confidence 3444445555555555555555554432 22344444555555555555555555555444321 134444444445555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 037477 456 ANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQK 492 (639)
Q Consensus 456 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 492 (639)
.|++++|...+++..+.. +.+...+..+..++...|
T Consensus 93 ~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 555555555555544432 123333444444443333
No 131
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.26 E-value=8.7e-06 Score=68.99 Aligned_cols=98 Identities=15% Similarity=0.055 Sum_probs=64.4
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037477 408 NITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLING 487 (639)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 487 (639)
...+..+...+...|++++|...|++....... +...|..+..+|...|++++|...|++.++.. +.+...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 344555666667777777777777776655432 56666667777777777777777777776654 2345566666667
Q ss_pred HHcCCChhHHHHHHHHHHHh
Q 037477 488 FLSQKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~~~ 507 (639)
|...|++++|...|+...+.
T Consensus 99 ~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777766654
No 132
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.25 E-value=0.00019 Score=68.78 Aligned_cols=173 Identities=8% Similarity=0.000 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHH
Q 037477 266 TITYNGILRVLARHESVRDFWNVVEEMKKEGYEMD-----IDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCS 340 (639)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~ 340 (639)
...+...+..+...|++++|.+.+.+..+.....+ ...+..+...+...|++++|+..+++..+........
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--- 151 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV--- 151 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch---
Confidence 34555677788899999999999988877532211 1224445666778889999999998876532110000
Q ss_pred HHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHC-CCCCC-----HHhHHHH
Q 037477 341 LLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNA-GFEPD-----NITYSQV 414 (639)
Q Consensus 341 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~-----~~~~~~l 414 (639)
.....+++.+...|...|++++|...|++..+. ...|+ ..++..+
T Consensus 152 -----------------------------~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nl 202 (293)
T 2qfc_A 152 -----------------------------YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNH 202 (293)
T ss_dssp -----------------------------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred -----------------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhH
Confidence 001225777888899999999999999887621 00122 1467777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC----CCC-CHHHHHHHHHHHHHcCCHHHH-HHHHHHHH
Q 037477 415 IFGLCKAGRFEDACNVLDEMEENG----CIP-DIKTWTILIQGHCAANEVDRA-LLCFAKMM 470 (639)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~~----~~p-~~~t~~~li~~~~~~g~~~~a-~~~~~~m~ 470 (639)
...|...|++++|...+++..+.. ... -..+|..+...|.+.|+.++| ...+++..
T Consensus 203 g~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 203 AKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 788888888888888887765421 111 145667777777777777777 66566554
No 133
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.23 E-value=4.5e-05 Score=62.43 Aligned_cols=94 Identities=10% Similarity=-0.034 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 037477 411 YSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLS 490 (639)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (639)
+......|.+.|++++|+..|++..+.... +...|..+..+|.+.|++++|+..+++.++.+ +.+...|..+..+|..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 333444444445555555555444443221 34444444445555555555555555544432 2234444444445555
Q ss_pred CCChhHHHHHHHHHHH
Q 037477 491 QKRVNGAYKLLVEMIE 506 (639)
Q Consensus 491 ~g~~~~A~~~~~~m~~ 506 (639)
.|++++|...|+...+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5555555555554443
No 134
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.22 E-value=5.5e-05 Score=61.88 Aligned_cols=96 Identities=17% Similarity=0.088 Sum_probs=51.5
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037477 375 VYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHC 454 (639)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~ 454 (639)
.+......|.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|+..|++..+.... +...|..+..+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHH
Confidence 34445555555555555555555555443 334455555555555555555555555555544322 3445555555555
Q ss_pred HcCCHHHHHHHHHHHHHc
Q 037477 455 AANEVDRALLCFAKMMEK 472 (639)
Q Consensus 455 ~~g~~~~a~~~~~~m~~~ 472 (639)
..|++++|.+.|++.++.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 555555555555555554
No 135
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.21 E-value=2.8e-05 Score=64.01 Aligned_cols=97 Identities=16% Similarity=0.075 Sum_probs=52.2
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037477 374 SVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGH 453 (639)
Q Consensus 374 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~ 453 (639)
..+..+...+...|++++|.+.|++..+.. +.+...+..+...|...|++++|...+++..+.... +...+..+...+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHHH
Confidence 344555555566666666666666655442 224455555555555556666666655555543321 344555555555
Q ss_pred HHcCCHHHHHHHHHHHHHc
Q 037477 454 CAANEVDRALLCFAKMMEK 472 (639)
Q Consensus 454 ~~~g~~~~a~~~~~~m~~~ 472 (639)
...|++++|.+.+++..+.
T Consensus 95 ~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHh
Confidence 5555555555555555543
No 136
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.20 E-value=9e-05 Score=62.69 Aligned_cols=104 Identities=9% Similarity=-0.043 Sum_probs=86.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 037477 442 DIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLI 521 (639)
Q Consensus 442 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 521 (639)
+...+..+...+.+.|++++|...|++.++.. +-+...|..+..+|...|++++|...|++..+...- +...|..+-
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~--~~~~~~~lg 111 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN--DYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS--CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC--CcHHHHHHH
Confidence 34567788888999999999999999999875 457888999999999999999999999999876332 355788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChH
Q 037477 522 EKLLGARRLEEAMNLLRLMKKQNYPPFPE 550 (639)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 550 (639)
.+|.+.|++++|.+.|++..+. .|+..
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 9999999999999999999873 35543
No 137
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.17 E-value=4.5e-05 Score=62.73 Aligned_cols=119 Identities=8% Similarity=-0.045 Sum_probs=86.3
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037477 406 PDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLI 485 (639)
Q Consensus 406 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 485 (639)
.+...|..+...+...|++++|...|++..+.... +...+..+...|...|++++|...+++..+.. +.+...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 34566777888888888888888888888775432 67778888888888888888888888888764 34677777888
Q ss_pred HHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 037477 486 NGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGAR 528 (639)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 528 (639)
.+|.+.|++++|...|++..+...- +...+..+...+...|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSS--CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGG--GTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHhc
Confidence 8888888888888888887765211 2334555555554443
No 138
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.13 E-value=8.5e-05 Score=60.66 Aligned_cols=119 Identities=11% Similarity=-0.056 Sum_probs=90.0
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037477 407 DNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLIN 486 (639)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 486 (639)
+...+..+...+...|++++|...|++...... .+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 445677777888888999999999888876543 267788888888888899999998888888764 345777788888
Q ss_pred HHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 037477 487 GFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARR 529 (639)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 529 (639)
.|...|++++|...|++..+.. ..+...+..+...+.+.|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD--PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHhc
Confidence 8888888888888888887652 1245566666666666554
No 139
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.12 E-value=0.00095 Score=64.39 Aligned_cols=221 Identities=10% Similarity=0.071 Sum_probs=156.9
Q ss_pred HHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-C-C
Q 037477 382 ALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAG-RFEDACNVLDEMEENGCIPDIKTWTILIQGHCAA-N-E 458 (639)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~-g-~ 458 (639)
...+.+..++|+++++.+.... +-+...|+.--..+...| .+++++..++.+.....+ +...|+.-...+.+. + +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSC
T ss_pred HHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCC
Confidence 3344556678999999998875 445667887777777788 599999999999987755 778888877777776 6 8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChh--------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-
Q 037477 459 VDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVN--------GAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARR- 529 (639)
Q Consensus 459 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~- 529 (639)
+++++++++++.+.. +-|...|+.-.-.+.+.|.++ +++++++++.+.. .-|...|+.....+.+.+.
T Consensus 141 ~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp CHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHTTSTTC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcccc
Confidence 899999999999875 347777776555555555555 8999999998862 2366677777777777775
Q ss_pred ------HHHHHHHHHHHHhCCCCCChH-hH---HHHHhhcCCH--------------------HHHHHHHHHhhcCC---
Q 037477 530 ------LEEAMNLLRLMKKQNYPPFPE-PF---VQYISKFGTV--------------------EDASEFLKALSVKE--- 576 (639)
Q Consensus 530 ------~~~A~~~~~~m~~~~~~p~~~-~~---~~ll~~~g~~--------------------~~a~~~~~~~~~~~--- 576 (639)
++++++.++++... .|+.. .+ ..++.+.|+. .+...+...+....
T Consensus 218 ~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPE 295 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCS
T ss_pred ccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccc
Confidence 78899999888873 35443 22 3344455443 23333333333222
Q ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCcc
Q 037477 577 ---YPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHH 609 (639)
Q Consensus 577 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 609 (639)
.+++.....|++.|...|+.++|.++++.+..+
T Consensus 296 ~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 296 DTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp SCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 578889999999999999999999999997533
No 140
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.10 E-value=0.0012 Score=63.71 Aligned_cols=225 Identities=9% Similarity=0.057 Sum_probs=133.0
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCc
Q 037477 275 VLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFR-MMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPD 353 (639)
Q Consensus 275 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 353 (639)
...+.+..++|+++++.+.... +-+..+|+.--..+...| .+++++++++.+.... |..
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKn----------------- 122 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKS----------------- 122 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCC-----------------
T ss_pred HHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCc-----------------
Confidence 3344455567888888887764 335566777666666677 4888888888776542 211
Q ss_pred hhHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc-C-ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHH------
Q 037477 354 LGLVFRVANKYESLGNSLSKSVYDGIHRALTKL-G-RFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFE------ 425 (639)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~------ 425 (639)
..+|+.-...+.+. + ++++++++++.+.+.. +.+...|+--...+.+.|.++
T Consensus 123 -------------------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~ 182 (349)
T 3q7a_A 123 -------------------YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQ 182 (349)
T ss_dssp -------------------HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred -------------------HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhh
Confidence 11222222222222 3 5677778888777654 446667766555555555555
Q ss_pred --HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh--
Q 037477 426 --DACNVLDEMEENGCIPDIKTWTILIQGHCAANE-------VDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRV-- 494 (639)
Q Consensus 426 --~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~-------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-- 494 (639)
++++.++++.+.... |...|+.....+.+.+. ++++++.+++++... +-|...|+-+-..+.+.|+.
T Consensus 183 ~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~ 260 (349)
T 3q7a_A 183 WGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLV 260 (349)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcc
Confidence 788888888876654 77778777777766665 677888888777764 44677776666556655543
Q ss_pred ------------------hHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037477 495 ------------------NGAYKLLVEMIEKV----RLRPWQATFKTLIEKLLGARRLEEAMNLLRLMK 541 (639)
Q Consensus 495 ------------------~~A~~~~~~m~~~~----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 541 (639)
.....+..++.... .-.+.......+++.|...|+.++|.++++.+.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 261 PILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp GGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 11222222221110 002345556666666666666666666666654
No 141
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.10 E-value=8.4e-05 Score=64.07 Aligned_cols=104 Identities=8% Similarity=-0.123 Sum_probs=69.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037477 408 NITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLING 487 (639)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 487 (639)
...|..+...+.+.|++++|+..|++..+.... +...|..+..+|...|++++|...+++.++.. +-+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 445566666677777777777777776665422 56667777777777777777777777777664 3356667777777
Q ss_pred HHcCCChhHHHHHHHHHHHhCCCCCC
Q 037477 488 FLSQKRVNGAYKLLVEMIEKVRLRPW 513 (639)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~~~~~~~p~ 513 (639)
|...|++++|...|++..+...-.++
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchH
Confidence 77777777777777777665333333
No 142
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.09 E-value=0.00012 Score=68.27 Aligned_cols=206 Identities=12% Similarity=0.021 Sum_probs=125.8
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHH-------HHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcC
Q 037477 278 RHESVRDFWNVVEEMKKEGYEMDIDTYIKIS-------RQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSIN 350 (639)
Q Consensus 278 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li-------~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~ 350 (639)
..++.+.|.+.|.+..+.. +-....|..++ ..+...++..+++..+..-. ++.|+......-| .+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l--~l~p~~l~a~~~~-----~g 89 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV--QISMSTLNARIAI-----GG 89 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT--TCCGGGGCCEEEC-----CT
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh--cCChhhhhhhhcc-----CC
Confidence 5789999999999998874 33567777663 34444444444443333332 2233221000000 00
Q ss_pred C-CchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 037477 351 N-PDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACN 429 (639)
Q Consensus 351 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 429 (639)
- +| ....+.--....-.+...+...|++++|.++|+.+...+ |+....-.+...+.+.+++++|+.
T Consensus 90 ~y~~-----------~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~ 156 (282)
T 4f3v_A 90 LYGD-----------ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVID 156 (282)
T ss_dssp TTCC-----------CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccc-----------cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHH
Confidence 0 00 000000112234456677888899999999998887653 443355555567888899999999
Q ss_pred HHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHH
Q 037477 430 VLDEMEENGCIPDI----KTWTILIQGHCAANEVDRALLCFAKMMEKNYDAD--ADLLDVLINGFLSQKRVNGAYKLLVE 503 (639)
Q Consensus 430 ~~~~m~~~~~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~ 503 (639)
.|+..... |+. ..+..+-.++...|++++|+..|++.......|. .........++.+.|+.++|..+|++
T Consensus 157 ~l~~a~~~---~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~ 233 (282)
T 4f3v_A 157 QVKSAGKW---PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEW 233 (282)
T ss_dssp HHTTGGGC---SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHhhcc---CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88755442 222 3566777888888888888888888875433243 23455556677888888888888888
Q ss_pred HHHh
Q 037477 504 MIEK 507 (639)
Q Consensus 504 m~~~ 507 (639)
+...
T Consensus 234 a~a~ 237 (282)
T 4f3v_A 234 LQTT 237 (282)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8765
No 143
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.09 E-value=0.00014 Score=67.78 Aligned_cols=195 Identities=8% Similarity=-0.102 Sum_probs=133.7
Q ss_pred ccCChhHHHHHHHHHHHCCCCCCHHhHHHH-------HHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------
Q 037477 385 KLGRFDEAEKMMKAMKNAGFEPDNITYSQV-------IFGLCKAGRFEDACNVLDEMEENGCIPD--------------- 442 (639)
Q Consensus 385 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~~~~p~--------------- 442 (639)
..++...|.+.|.+..+.. +-....|..+ ...+...++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 5799999999999998874 3456677776 4555555555665555554433 1111
Q ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC--
Q 037477 443 -------IKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW-- 513 (639)
Q Consensus 443 -------~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-- 513 (639)
...+-.....+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+..... . .|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~ 170 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLA 170 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccH
Confidence 2234456677888999999999998887654 44435555566788999999999999854321 1 111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH-----hHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 037477 514 QATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPE-----PFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVF 587 (639)
Q Consensus 514 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-----~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 587 (639)
...+..+-.++.+.|++++|+..|++.......|... .....+.+.|+.++|...|+++....|. ...+..|.
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 2356677788999999999999999987544325411 2233446889999999999999887665 66555553
No 144
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.09 E-value=4.2e-05 Score=68.49 Aligned_cols=161 Identities=8% Similarity=0.014 Sum_probs=97.7
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhH
Q 037477 277 ARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGL 356 (639)
Q Consensus 277 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~ 356 (639)
...|++++|.++++.+... .......+..+...+...|++++|+..+++..+. +.
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---------------~~--------- 57 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQ---------------AQ--------- 57 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HH---------
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH---------------HH---------
Confidence 4568888888855555432 1235667888888888899999998888877541 00
Q ss_pred HHHHHHHHHhcCCC-CChhhHHHHHHHHHccCChhHHHHHHHHHHHC----CCCC--CHHhHHHHHHHHHhcCCHHHHHH
Q 037477 357 VFRVANKYESLGNS-LSKSVYDGIHRALTKLGRFDEAEKMMKAMKNA----GFEP--DNITYSQVIFGLCKAGRFEDACN 429 (639)
Q Consensus 357 ~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~--~~~~~~~li~~~~~~g~~~~A~~ 429 (639)
..+.. ....++..+...|...|++++|.+.+++..+. +-.+ ....+..+...+...|++++|..
T Consensus 58 ---------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 128 (203)
T 3gw4_A 58 ---------KSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQ 128 (203)
T ss_dssp ---------TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred ---------HcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 00110 11234666777888888888888888776543 1111 13346667777777888888888
Q ss_pred HHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 037477 430 VLDEMEENGC-IPD----IKTWTILIQGHCAANEVDRALLCFAKMME 471 (639)
Q Consensus 430 ~~~~m~~~~~-~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 471 (639)
.+++..+... ..+ ..++..+...+...|++++|.+.+++..+
T Consensus 129 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 129 EYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 8777653210 011 12345566666777777777777666554
No 145
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.09 E-value=6.6e-05 Score=73.51 Aligned_cols=87 Identities=14% Similarity=0.008 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 037477 444 KTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEK 523 (639)
Q Consensus 444 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~ 523 (639)
..|..+..+|.+.|++++|...+++.++.. +.+...+..+..+|...|++++|...|++..+.. .-+...+..+...
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~ 273 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVC 273 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 445555555555555555555555555543 2244455555555555555555555555554431 1123344445555
Q ss_pred HHhcCCHHHH
Q 037477 524 LLGARRLEEA 533 (639)
Q Consensus 524 ~~~~g~~~~A 533 (639)
+.+.|+.++|
T Consensus 274 ~~~~~~~~~a 283 (336)
T 1p5q_A 274 QQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 146
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.08 E-value=6.2e-05 Score=65.81 Aligned_cols=121 Identities=11% Similarity=0.138 Sum_probs=96.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHcCCCh--h
Q 037477 419 CKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLING-FLSQKRV--N 495 (639)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~--~ 495 (639)
...|++++|...+++..+... .+...|..+...|...|++++|...|++..+.. +.+...+..+..+ |...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 456888999999998877653 367889999999999999999999999998865 3467777788888 7789998 9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 037477 496 GAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQ 543 (639)
Q Consensus 496 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 543 (639)
+|...|+...+.. .-+...+..+...|...|++++|...+++..+.
T Consensus 99 ~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALD--SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 9999999998762 224667888888999999999999999998874
No 147
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.06 E-value=0.00015 Score=70.86 Aligned_cols=132 Identities=16% Similarity=0.055 Sum_probs=86.8
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC--------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037477 373 KSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPD--------------NITYSQVIFGLCKAGRFEDACNVLDEMEENG 438 (639)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 438 (639)
...+..+...|.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..|++..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44566666777777777777777777766532111 3667777777777777777777777776654
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHH-HHHHHHHHH
Q 037477 439 CIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGA-YKLLVEMIE 506 (639)
Q Consensus 439 ~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~ 506 (639)
.. +...|..+..+|...|++++|...|++.++.. +-+...+..+..++.+.|+.++| ..+|..|..
T Consensus 227 p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 227 SN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 56677777777777777777777777777654 33556666666677777776666 345555443
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.03 E-value=0.00023 Score=56.72 Aligned_cols=93 Identities=10% Similarity=-0.046 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 037477 411 YSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLS 490 (639)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (639)
+..+...+...|++++|...|++...... .+...+..+...+...|++++|...+++..+.. +.+...+..+..++..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 33344444444444444444444443321 134444444444444555555555554444432 2234444444445555
Q ss_pred CCChhHHHHHHHHHH
Q 037477 491 QKRVNGAYKLLVEMI 505 (639)
Q Consensus 491 ~g~~~~A~~~~~~m~ 505 (639)
.|++++|...|+...
T Consensus 85 ~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 85 LNRFEEAKRTYEEGL 99 (118)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHH
Confidence 555555555555444
No 149
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.03 E-value=0.00031 Score=66.68 Aligned_cols=187 Identities=13% Similarity=0.040 Sum_probs=128.5
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037477 373 KSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQG 452 (639)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~ 452 (639)
...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|...+++..+.... +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3456677888999999999999999998874 347888999999999999999999999999886533 67889999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 037477 453 HCAANEVDRALLCFAKMMEKNY----DADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGAR 528 (639)
Q Consensus 453 ~~~~g~~~~a~~~~~~m~~~g~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 528 (639)
|...|++++|...|++..+.+. ..+...+..+ .. .++.. +...... ....+......+ ..+ ..|
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~------~~~~~-~~~~~~~-~~~~~~~i~~~l-~~l-~~~ 149 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RI------AKKKR-WNSIEER-RIHQESELHSYL-TRL-IAA 149 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HH------HHHHH-HHHHHHT-CCCCCCHHHHHH-HHH-HHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HH------HHHHH-HHHHHHH-HHhhhHHHHHHH-HHH-HHH
Confidence 9999999999999999887421 1111122111 11 11112 1222222 333343333333 223 268
Q ss_pred CHHHHHHHHHHHHhCCCCCChHhHH----HHHhhc-CCHHHHHHHHHHhhcC
Q 037477 529 RLEEAMNLLRLMKKQNYPPFPEPFV----QYISKF-GTVEDASEFLKALSVK 575 (639)
Q Consensus 529 ~~~~A~~~~~~m~~~~~~p~~~~~~----~ll~~~-g~~~~a~~~~~~~~~~ 575 (639)
+.++|++.++...+ ..|+..... .++... +.+++|.++|.+..+.
T Consensus 150 ~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 150 ERERELEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 88999998887776 456654432 233333 6788899999887654
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.02 E-value=0.00022 Score=58.10 Aligned_cols=95 Identities=12% Similarity=-0.010 Sum_probs=51.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037477 410 TYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFL 489 (639)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 489 (639)
.|..+...+.+.|++++|...|++..+.... +...|..+..+|.+.|++++|...+++.++.. +.+...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3444445555555555555555555544321 44555555555555666666666555555543 223455555555555
Q ss_pred cCCChhHHHHHHHHHHH
Q 037477 490 SQKRVNGAYKLLVEMIE 506 (639)
Q Consensus 490 ~~g~~~~A~~~~~~m~~ 506 (639)
..|++++|...|++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 56666666655555544
No 151
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.00 E-value=0.00013 Score=61.12 Aligned_cols=95 Identities=13% Similarity=0.064 Sum_probs=53.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 037477 411 YSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLS 490 (639)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (639)
+..+...+.+.|++++|...|++....... +...|..+..+|...|++++|...|++.++.. +.+...+..+..+|..
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 344445555666666666666665554322 45555556666666666666666666666553 2244455555556666
Q ss_pred CCChhHHHHHHHHHHHh
Q 037477 491 QKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 491 ~g~~~~A~~~~~~m~~~ 507 (639)
.|++++|...|+...+.
T Consensus 99 ~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 99 LGDLDGAESGFYSARAL 115 (142)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666655543
No 152
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.00 E-value=3.9e-05 Score=64.92 Aligned_cols=98 Identities=14% Similarity=-0.047 Sum_probs=79.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 037477 442 DIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLI 521 (639)
Q Consensus 442 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 521 (639)
+...+..+...+...|++++|...|++.+... +.+...|..+..+|...|++++|...|+.......- +...|..+.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~lg 96 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX--EPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--CchHHHHHH
Confidence 44566777888889999999999999988875 447788888888899999999999999998876322 345777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 037477 522 EKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~m~~ 542 (639)
.+|...|++++|.+.|++..+
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 889999999999999988876
No 153
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.96 E-value=0.00024 Score=58.06 Aligned_cols=96 Identities=17% Similarity=0.077 Sum_probs=48.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCC----HHHHHH
Q 037477 410 TYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKN--YDAD----ADLLDV 483 (639)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~----~~~~~~ 483 (639)
.+..+...+.+.|++++|+..|++..+.... +...|..+..+|.+.|++++|++.+++.++.. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3444555555555555555555555544322 34555555555555555555555555554421 1111 123444
Q ss_pred HHHHHHcCCChhHHHHHHHHHHH
Q 037477 484 LINGFLSQKRVNGAYKLLVEMIE 506 (639)
Q Consensus 484 li~~~~~~g~~~~A~~~~~~m~~ 506 (639)
+-.++...|++++|++.|++...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 44455555555555555555444
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.96 E-value=0.00024 Score=57.83 Aligned_cols=97 Identities=16% Similarity=0.070 Sum_probs=85.3
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037477 374 SVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGH 453 (639)
Q Consensus 374 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~ 453 (639)
..+......+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..|++..+.... +...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 346667788899999999999999998875 457888999999999999999999999999887543 678899999999
Q ss_pred HHcCCHHHHHHHHHHHHHc
Q 037477 454 CAANEVDRALLCFAKMMEK 472 (639)
Q Consensus 454 ~~~g~~~~a~~~~~~m~~~ 472 (639)
...|++++|...|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 9999999999999998875
No 155
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.95 E-value=0.00013 Score=57.66 Aligned_cols=94 Identities=10% Similarity=0.104 Sum_probs=40.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHH
Q 037477 411 YSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDA--DADLLDVLINGF 488 (639)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~ 488 (639)
+..+...+...|++++|...|++..+... .+...|..+...+...|++++|...+++..+.. +. +...+..+..+|
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHH
Confidence 33344444444444444444444443321 133344444444444444444444444444432 11 234444444444
Q ss_pred HcC-CChhHHHHHHHHHHH
Q 037477 489 LSQ-KRVNGAYKLLVEMIE 506 (639)
Q Consensus 489 ~~~-g~~~~A~~~~~~m~~ 506 (639)
... |++++|.+.|+...+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGG
T ss_pred HHHhCCHHHHHHHHHHHhh
Confidence 444 444444444444433
No 156
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.95 E-value=2.7e-05 Score=69.70 Aligned_cols=155 Identities=8% Similarity=-0.102 Sum_probs=87.2
Q ss_pred HHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------HHHHH
Q 037477 383 LTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPD---------------IKTWT 447 (639)
Q Consensus 383 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---------------~~t~~ 447 (639)
....|+++++.+.++.-.+.. ......+..+...+...|++++|...|++..+....-. ...|.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp --------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 334455555555554322110 11234566667777788888888888888776432211 25677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 037477 448 ILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGA 527 (639)
Q Consensus 448 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 527 (639)
.+..+|...|++++|...+++.++.. +.+...+..+..+|...|++++|...|+...+.. .-+...+..+...+...
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHH
Confidence 77777777888888888887777764 3456677777777777888888888887776652 12344556665666555
Q ss_pred CCHHHHH-HHHHHHH
Q 037477 528 RRLEEAM-NLLRLMK 541 (639)
Q Consensus 528 g~~~~A~-~~~~~m~ 541 (639)
++.+++. ..+..|.
T Consensus 170 ~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 170 KEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHC----------
T ss_pred HHHHHHHHHHHHHHh
Confidence 5555554 3444443
No 157
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.95 E-value=0.0015 Score=66.37 Aligned_cols=199 Identities=6% Similarity=-0.014 Sum_probs=107.3
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHhhcC-CCCCCHH
Q 037477 275 VLARHESVRDFWNVVEEMKKEGYEMD----------------IDTYIKISRQFQKFRMMEDAVKLFEFMMDG-PYKPSVQ 337 (639)
Q Consensus 275 ~~~~~g~~~~a~~~~~~m~~~g~~p~----------------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g~~p~~~ 337 (639)
.+.+.|++++|.+.|..+.+...... ...+..+...|...|++++|.+.+..+... +-.++..
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 45566777777777777766421110 124667788888888888888888776542 0001110
Q ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHH----CCCCCC-HHhHH
Q 037477 338 DCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKN----AGFEPD-NITYS 412 (639)
Q Consensus 338 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~~~-~~~~~ 412 (639)
+.. .+.+.+-..+...|+.++|.+++..... .+..+. ..++.
T Consensus 93 ~~~---------------------------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (434)
T 4b4t_Q 93 TVK---------------------------------VLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSI 139 (434)
T ss_dssp HHH---------------------------------HHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHH
T ss_pred HHH---------------------------------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHH
Confidence 000 0112222233344666666666655432 122222 23455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCC----HHHH
Q 037477 413 QVIFGLCKAGRFEDACNVLDEMEEN--GC--IP-DIKTWTILIQGHCAANEVDRALLCFAKMMEK--NYDAD----ADLL 481 (639)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~--~~--~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~----~~~~ 481 (639)
.+...|...|++++|..++++.... +. .+ ...++..++..|...|++++|..++++.... .+..+ ...+
T Consensus 140 ~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 219 (434)
T 4b4t_Q 140 KLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELD 219 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHH
Confidence 6666677777777777776665432 11 11 1345666666777777777777776665541 11111 2334
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHH
Q 037477 482 DVLINGFLSQKRVNGAYKLLVEMIE 506 (639)
Q Consensus 482 ~~li~~~~~~g~~~~A~~~~~~m~~ 506 (639)
..+...+...|++++|...|.+..+
T Consensus 220 ~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 220 LMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4445555666777777666665543
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.93 E-value=0.00058 Score=54.32 Aligned_cols=96 Identities=11% Similarity=0.041 Sum_probs=46.8
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037477 375 VYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHC 454 (639)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~ 454 (639)
.+..+...+...|++++|.+.|+...... +.+...+..+...+...|++++|...+++..+.... +...+..+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 34444445555555555555555554432 223444444555555555555555555555443221 3444455555555
Q ss_pred HcCCHHHHHHHHHHHHHc
Q 037477 455 AANEVDRALLCFAKMMEK 472 (639)
Q Consensus 455 ~~g~~~~a~~~~~~m~~~ 472 (639)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 555555555555555443
No 159
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.92 E-value=0.00026 Score=57.93 Aligned_cols=106 Identities=11% Similarity=0.074 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCC-CCCC----HHHH
Q 037477 443 IKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVR-LRPW----QATF 517 (639)
Q Consensus 443 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~p~----~~~~ 517 (639)
...+..+...+.+.|++++|++.|++.++.. +-+...|..+..+|.+.|++++|+..|+...+... ..++ ..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 3466778888999999999999999998875 44678888888899999999999999988765411 1111 2356
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHh
Q 037477 518 KTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEP 551 (639)
Q Consensus 518 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 551 (639)
..+-.++...|++++|++.|++..+ ..|+...
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~ 118 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPEL 118 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHH
Confidence 6677778888888888888888776 3355443
No 160
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.90 E-value=0.00016 Score=59.02 Aligned_cols=97 Identities=12% Similarity=0.100 Sum_probs=48.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCC----HHHHHH
Q 037477 410 TYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNY--DAD----ADLLDV 483 (639)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~----~~~~~~ 483 (639)
.|..+...+...|++++|...|++..+... .+...+..+...|...|++++|...+++..+... .++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 344444555555555555555555544331 1344555555555555555555555555544321 111 344455
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHh
Q 037477 484 LINGFLSQKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 484 li~~~~~~g~~~~A~~~~~~m~~~ 507 (639)
+..+|...|++++|...|+...+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 555555555555565555555543
No 161
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.90 E-value=0.00035 Score=57.72 Aligned_cols=97 Identities=10% Similarity=-0.020 Sum_probs=47.5
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037477 407 DNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLIN 486 (639)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 486 (639)
+...|..+...+...|++++|...|++....... +...|..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 3444444555555555555555555554443321 34445555555555555555555555555443 223444445555
Q ss_pred HHHcCCChhHHHHHHHHHH
Q 037477 487 GFLSQKRVNGAYKLLVEMI 505 (639)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~ 505 (639)
+|...|++++|...|+...
T Consensus 86 ~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 5555555555555555444
No 162
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.89 E-value=0.00055 Score=57.28 Aligned_cols=97 Identities=13% Similarity=0.042 Sum_probs=60.8
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 037477 373 KSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPD----NITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTI 448 (639)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 448 (639)
...+..+...+...|++++|.+.|++..+. .|+ ...|..+...|...|++++|...+++..+.... +...|..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHH
Confidence 345555666667777777777777776654 344 455666666666667777777666666554321 4555666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Q 037477 449 LIQGHCAANEVDRALLCFAKMMEK 472 (639)
Q Consensus 449 li~~~~~~g~~~~a~~~~~~m~~~ 472 (639)
+..+|...|++++|...|++..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 666666666666666666666654
No 163
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.89 E-value=0.00018 Score=60.26 Aligned_cols=96 Identities=14% Similarity=0.025 Sum_probs=83.5
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037477 375 VYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHC 454 (639)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~ 454 (639)
.+..+...+.+.|++++|...|+...... +.+...|..+..+|...|++++|...|++....... +...+..+..+|.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHH
Confidence 44556778889999999999999998875 457888999999999999999999999999887643 6678888999999
Q ss_pred HcCCHHHHHHHHHHHHHc
Q 037477 455 AANEVDRALLCFAKMMEK 472 (639)
Q Consensus 455 ~~g~~~~a~~~~~~m~~~ 472 (639)
..|++++|...|++.++.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999998875
No 164
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.88 E-value=0.00077 Score=68.46 Aligned_cols=194 Identities=11% Similarity=0.049 Sum_probs=129.5
Q ss_pred HHHHccCChhHHHHHHHHHHHCCCCCC----------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH
Q 037477 381 RALTKLGRFDEAEKMMKAMKNAGFEPD----------------NITYSQVIFGLCKAGRFEDACNVLDEMEENG-CIPDI 443 (639)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~m~~~g~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~ 443 (639)
..+.+.|++++|.+.|..+.+...... ...+..+...|...|++++|.+.+.++...- ..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 456778999999999999887532211 1236778899999999999999998875421 11222
Q ss_pred H----HHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCC---C
Q 037477 444 K----TWTILIQGHCAANEVDRALLCFAKMME----KNYDAD-ADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRL---R 511 (639)
Q Consensus 444 ~----t~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~ 511 (639)
. +.+.+-..+...|+.+.|..++..... .+..+. ..++..+...|...|++++|..++++......- .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1 223333344457889999998887765 222332 456778888999999999999999987654221 1
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCChH---hH----HHHHhhcCCHHHHHHHHHHhhc
Q 037477 512 PW-QATFKTLIEKLLGARRLEEAMNLLRLMKKQ--NYPPFPE---PF----VQYISKFGTVEDASEFLKALSV 574 (639)
Q Consensus 512 p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~---~~----~~ll~~~g~~~~a~~~~~~~~~ 574 (639)
+. ...|..++..|...|++++|..++++.... .+..+.. .+ ..+....|++++|...|.+..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 567888889999999999999999887642 1221111 11 1112466889998887766643
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.88 E-value=0.0003 Score=58.13 Aligned_cols=100 Identities=14% Similarity=0.015 Sum_probs=87.8
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037477 371 LSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILI 450 (639)
Q Consensus 371 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li 450 (639)
.+...+..+...+...|++++|...|+...+.. +.+...|..+..+|...|++++|...+++..+.... +...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence 345677888899999999999999999988775 446788999999999999999999999999886543 678899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc
Q 037477 451 QGHCAANEVDRALLCFAKMMEK 472 (639)
Q Consensus 451 ~~~~~~g~~~~a~~~~~~m~~~ 472 (639)
..|...|++++|...|++..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999998874
No 166
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.87 E-value=0.00032 Score=60.31 Aligned_cols=99 Identities=13% Similarity=0.085 Sum_probs=87.2
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037477 373 KSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQG 452 (639)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~ 452 (639)
...+..+...+.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|+..|++..+.... +...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4457778889999999999999999998875 447888999999999999999999999999887543 68899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcC
Q 037477 453 HCAANEVDRALLCFAKMMEKN 473 (639)
Q Consensus 453 ~~~~g~~~~a~~~~~~m~~~g 473 (639)
|...|++++|...|++.++..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999998853
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.86 E-value=0.00015 Score=59.15 Aligned_cols=111 Identities=14% Similarity=0.126 Sum_probs=90.2
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHH
Q 037477 374 SVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGC--IPD----IKTWT 447 (639)
Q Consensus 374 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~----~~t~~ 447 (639)
..+..+...+...|++++|...|+...+.. +.+...+..+...|...|++++|...+++..+... .++ ..+|.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 346678888999999999999999998775 45678888999999999999999999999876532 122 67888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037477 448 ILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLING 487 (639)
Q Consensus 448 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 487 (639)
.+...+...|++++|.+.|++..+.. |+......+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~ 121 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence 89999999999999999999999864 466555544433
No 168
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.86 E-value=0.00022 Score=56.24 Aligned_cols=100 Identities=10% Similarity=0.017 Sum_probs=85.8
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 037477 373 KSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCI-PDIKTWTILIQ 451 (639)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~t~~~li~ 451 (639)
...+..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|...|++..+.... .+...+..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 4456678888999999999999999998775 446788889999999999999999999999876421 15788999999
Q ss_pred HHHHc-CCHHHHHHHHHHHHHcC
Q 037477 452 GHCAA-NEVDRALLCFAKMMEKN 473 (639)
Q Consensus 452 ~~~~~-g~~~~a~~~~~~m~~~g 473 (639)
.+... |++++|.+.+++..+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 99999 99999999999998864
No 169
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.83 E-value=0.011 Score=56.77 Aligned_cols=195 Identities=8% Similarity=0.014 Sum_probs=133.2
Q ss_pred hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HHHHHHH
Q 037477 389 FDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAG--RFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANE-VDRALLC 465 (639)
Q Consensus 389 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~-~~~a~~~ 465 (639)
+++++.+++.+.... +-+..+|+.-...+.+.| .+++++.+++++.+.... |...|+.-.-.+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 567788888887664 457778887777777777 488999999998887654 78888877777777787 6888999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcC--------------CChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----
Q 037477 466 FAKMMEKNYDADADLLDVLINGFLSQ--------------KRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGA---- 527 (639)
Q Consensus 466 ~~~m~~~g~~~~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---- 527 (639)
++++++.. +-|...|+.....+.+. +.++++++.++...... +-|...|+-+--.+.+.
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~--P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccCcc
Confidence 99988876 44777776665554443 44778888888877652 22455665444444443
Q ss_pred -------CCHHHHHHHHHHHHhCCCCCChH-hHHHH------HhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 037477 528 -------RRLEEAMNLLRLMKKQNYPPFPE-PFVQY------ISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESF 590 (639)
Q Consensus 528 -------g~~~~A~~~~~~m~~~~~~p~~~-~~~~l------l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 590 (639)
+.++++++.++++.+ ..|+.. .+..+ +...|..++...++.++.+.+|....-|..+...+
T Consensus 245 ~~~~~~~~~l~~el~~~~elle--~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQE--LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHh--hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 356788888888876 445532 11111 12356777788888888887777777777665554
No 170
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.81 E-value=0.00019 Score=61.09 Aligned_cols=132 Identities=13% Similarity=-0.010 Sum_probs=66.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHH
Q 037477 411 YSQVIFGLCKAGRFEDACNVLDEMEENGCI-PD----IKTWTILIQGHCAANEVDRALLCFAKMMEKNY-DAD----ADL 480 (639)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~~ 480 (639)
+..+...|...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.+++..+... ..+ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 344444445555555555555544321100 01 12455555556666666666666655544210 001 234
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 481 LDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW----QATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
+..+...+...|++++|...+++..+...-..+ ...+..+...+...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 455555666666666666666655432110111 23455566666777777777777766553
No 171
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.80 E-value=0.00038 Score=62.02 Aligned_cols=130 Identities=11% Similarity=-0.044 Sum_probs=97.7
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC---------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 037477 375 VYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPD---------------NITYSQVIFGLCKAGRFEDACNVLDEMEENGC 439 (639)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 439 (639)
.+..+...+...|++++|.+.|++..+...... ...|..+..+|.+.|++++|+..+++..+...
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 355577788899999999999999987531111 26788889999999999999999999988653
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHH-HHHHHHHH
Q 037477 440 IPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAY-KLLVEMIE 506 (639)
Q Consensus 440 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~ 506 (639)
.+...+..+..+|...|++++|.+.|++..+.. +-+...+..+..++...++.+++. ..|..|..
T Consensus 120 -~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 120 -NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp -TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred -ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 367889999999999999999999999999874 346777777777777777766665 44554443
No 172
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.78 E-value=0.0012 Score=55.22 Aligned_cols=99 Identities=15% Similarity=0.043 Sum_probs=74.2
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 037477 406 PDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPD----IKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLL 481 (639)
Q Consensus 406 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 481 (639)
.+...+..+...+...|++++|...|++..+.. |+ ...|..+...|...|++++|...+++..+.. +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 355667777788888888888888888887653 55 5677777777888888888888888877763 3356667
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHh
Q 037477 482 DVLINGFLSQKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 482 ~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (639)
..+..+|...|++++|...|++..+.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 77777778888888888888877665
No 173
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.75 E-value=0.032 Score=53.42 Aligned_cols=224 Identities=10% Similarity=0.048 Sum_probs=147.0
Q ss_pred HcCCChh-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 037477 277 ARHESVR-DFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRM----------MEDAVKLFEFMMDGPYKPSVQDCSLLLRS 345 (639)
Q Consensus 277 ~~~g~~~-~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------~~~a~~l~~~m~~~g~~p~~~~~~~ll~~ 345 (639)
.+.|.++ +|+++++.+.... +-+...|+.=-..+...+. +++++.+++.+...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--------------- 103 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------------- 103 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh---------------
Confidence 3455554 7899999888764 2244456543333322222 44555555555432
Q ss_pred HhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC--ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 037477 346 ISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLG--RFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGR 423 (639)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 423 (639)
.+-+..+|+.-...+...| ++++++.+++.+.+.. +.|...|+--...+...|.
T Consensus 104 -----------------------~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~ 159 (331)
T 3dss_A 104 -----------------------NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAV 159 (331)
T ss_dssp -----------------------CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred -----------------------CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCc
Confidence 1123334444444455556 4789999999998876 5578888887777888888
Q ss_pred -HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037477 424 -FEDACNVLDEMEENGCIPDIKTWTILIQGHCAA--------------NEVDRALLCFAKMMEKNYDADADLLDVLINGF 488 (639)
Q Consensus 424 -~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~--------------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (639)
++++++.++++.+..+. |...|+.....+.+. +.++++++.+...+... +-|...|+-+-..+
T Consensus 160 ~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll 237 (331)
T 3dss_A 160 APAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLL 237 (331)
T ss_dssp CHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 58999999999987765 788888776666655 45788999999998875 45777777555555
Q ss_pred HcC-----------CChhHHHHHHHHHHHhCCCCCCHHHHHH--HH---HHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 037477 489 LSQ-----------KRVNGAYKLLVEMIEKVRLRPWQATFKT--LI---EKLLGARRLEEAMNLLRLMKKQNYPPF 548 (639)
Q Consensus 489 ~~~-----------g~~~~A~~~~~~m~~~~~~~p~~~~~~~--li---~~~~~~g~~~~A~~~~~~m~~~~~~p~ 548 (639)
.+. +.++++++.++++.+. .|+. .|.. ++ .+....|..+++...++++.+ +.|.
T Consensus 238 ~~~~~~~~~~~~~~~~l~~el~~~~elle~---~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~ 307 (331)
T 3dss_A 238 GAGSGRCELSVEKSTVLQSELESCKELQEL---EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPM 307 (331)
T ss_dssp HSSSCGGGCCHHHHHHHHHHHHHHHHHHHH---CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGG
T ss_pred HhccCccccchHHHHHHHHHHHHHHHHHhh---Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcc
Confidence 554 4578899999999876 4553 2322 22 222346777888888888876 4454
No 174
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.74 E-value=0.00017 Score=61.41 Aligned_cols=133 Identities=16% Similarity=0.099 Sum_probs=100.7
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHCCCC-CC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HH
Q 037477 375 VYDGIHRALTKLGRFDEAEKMMKAMKNAGFE-PD----NITYSQVIFGLCKAGRFEDACNVLDEMEENGCI-PD----IK 444 (639)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~ 444 (639)
++..+...|...|++++|.+.+++..+.... ++ ...+..+...+...|++++|...+++..+.... .+ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 5667888889999999999999887654211 11 146778889999999999999999987642110 12 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 037477 445 TWTILIQGHCAANEVDRALLCFAKMMEK----NYD-ADADLLDVLINGFLSQKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 445 t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (639)
.+..+...+...|++++|.+.+++..+. +.. .....+..+...|...|++++|...+++..+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6778888999999999999999988763 211 11345677788899999999999999987653
No 175
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.72 E-value=6.8e-05 Score=60.35 Aligned_cols=84 Identities=11% Similarity=-0.017 Sum_probs=34.7
Q ss_pred CChhHHHHHHHHHHHCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 037477 387 GRFDEAEKMMKAMKNAG--FEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALL 464 (639)
Q Consensus 387 g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~ 464 (639)
|++++|+..|++..+.+ -+.+...|..+...|...|++++|...|++..+.... +...+..+..++...|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHH
Confidence 44444555554444332 0112233444444444444444444444444443322 23344444444444444444444
Q ss_pred HHHHHHH
Q 037477 465 CFAKMME 471 (639)
Q Consensus 465 ~~~~m~~ 471 (639)
.+++.++
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.72 E-value=0.00033 Score=56.68 Aligned_cols=92 Identities=14% Similarity=0.084 Sum_probs=55.1
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 037477 378 GIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAAN 457 (639)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g 457 (639)
.+...+.+.|++++|...|+...+.. +.+...|..+..++...|++++|+..|++..+.... +...+..+...|...|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 34455566666666666666666543 234555666666666666666666666666654322 4455666666666666
Q ss_pred CHHHHHHHHHHHHH
Q 037477 458 EVDRALLCFAKMME 471 (639)
Q Consensus 458 ~~~~a~~~~~~m~~ 471 (639)
++++|...+++.++
T Consensus 100 ~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 100 NANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666666554
No 177
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.68 E-value=0.00042 Score=56.05 Aligned_cols=94 Identities=11% Similarity=0.091 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 037477 411 YSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLS 490 (639)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (639)
+..+...+.+.|++++|...|++..+.... +...|..+..++...|++++|...|++.++.. +-+...+..+..+|..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 334455566667777777777766654422 55666666666666777777777776666654 2245566666666666
Q ss_pred CCChhHHHHHHHHHHH
Q 037477 491 QKRVNGAYKLLVEMIE 506 (639)
Q Consensus 491 ~g~~~~A~~~~~~m~~ 506 (639)
.|++++|...|++..+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666666553
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.62 E-value=0.00024 Score=73.19 Aligned_cols=122 Identities=14% Similarity=0.040 Sum_probs=83.6
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 037477 379 IHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANE 458 (639)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~ 458 (639)
+...+.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|+..+++..+.... +...|..+..+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 3345677888888888888887763 345777888888888888888888888888876432 56778888888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHcCCChhHHHHHHHH
Q 037477 459 VDRALLCFAKMMEKNYDADADLLDVLING--FLSQKRVNGAYKLLVE 503 (639)
Q Consensus 459 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~ 503 (639)
+++|.+.+++..+... -+...+..+..+ +.+.|++++|.+.+++
T Consensus 90 ~~eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 90 FRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 8888888888877532 123334444334 6777788888877764
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.60 E-value=0.0025 Score=51.70 Aligned_cols=92 Identities=9% Similarity=0.005 Sum_probs=46.6
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHH
Q 037477 379 IHRALTKLGRFDEAEKMMKAMKNAGFEPDN---ITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPD---IKTWTILIQG 452 (639)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~t~~~li~~ 452 (639)
+...+...|++++|.+.|+...+.. +.+. ..+..+..++.+.|++++|...|++..+.... + ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 3344555566666666666555442 1112 24444555555555565555555555543311 1 3344445555
Q ss_pred HHHcCCHHHHHHHHHHHHHc
Q 037477 453 HCAANEVDRALLCFAKMMEK 472 (639)
Q Consensus 453 ~~~~g~~~~a~~~~~~m~~~ 472 (639)
+...|++++|...|+++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 55555555555555555544
No 180
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.59 E-value=0.00025 Score=73.05 Aligned_cols=114 Identities=11% Similarity=-0.014 Sum_probs=73.0
Q ss_pred CchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 037477 352 PDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVL 431 (639)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 431 (639)
.+.+.+...+.+..+.. +.+...|..+..+|.+.|++++|.+.+++..+.. +.+...|..+..+|...|++++|.+.|
T Consensus 20 g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~~~~ 97 (477)
T 1wao_1 20 KDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALRDY 97 (477)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35666666666665542 2246677777888888888888888888887764 345667777788888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHH
Q 037477 432 DEMEENGCIPDIKTWTILIQG--HCAANEVDRALLCFAK 468 (639)
Q Consensus 432 ~~m~~~~~~p~~~t~~~li~~--~~~~g~~~~a~~~~~~ 468 (639)
++..+.... +...+..+..+ +.+.|++++|.+.+++
T Consensus 98 ~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 98 ETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 887765322 23344444444 6677777777777654
No 181
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.58 E-value=0.00021 Score=57.44 Aligned_cols=106 Identities=13% Similarity=0.029 Sum_probs=80.0
Q ss_pred hcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHH
Q 037477 420 KAGRFEDACNVLDEMEENGC--IPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGA 497 (639)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~~~--~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 497 (639)
..|++++|+..|++..+.+. .-+...|..+...|...|++++|...+++.++.. +-+...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 35888999999999887641 1245678888889999999999999999999875 34678888888999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 037477 498 YKLLVEMIEKVRLRPWQATFKTLIEKLLG 526 (639)
Q Consensus 498 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 526 (639)
...|++..+...-.|+...|...+..|.+
T Consensus 81 ~~~~~~al~~~p~~~~~~~~~~ai~~~~~ 109 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQSYKQAILFYAD 109 (117)
T ss_dssp HHHHHHHHHHHCCCHHHHHTHHHHHHHTT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 99999888765555556666666666654
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.57 E-value=0.0024 Score=51.81 Aligned_cols=93 Identities=17% Similarity=0.121 Sum_probs=61.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHH
Q 037477 413 QVIFGLCKAGRFEDACNVLDEMEENGCIPDI---KTWTILIQGHCAANEVDRALLCFAKMMEKNYDAD---ADLLDVLIN 486 (639)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~ 486 (639)
.+...+...|++++|...|++..+.... +. ..+..+..++...|++++|...+++..+... .+ ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP-THDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC-CCcccHHHHHHHHH
Confidence 3455666777777887777777664322 22 3566667777777777777777777776532 12 455666666
Q ss_pred HHHcCCChhHHHHHHHHHHHh
Q 037477 487 GFLSQKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~~~ 507 (639)
+|...|++++|...|+.+.+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777777665
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.44 E-value=0.0014 Score=64.91 Aligned_cols=136 Identities=13% Similarity=0.029 Sum_probs=68.9
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 037477 376 YDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCA 455 (639)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~ 455 (639)
+..+...+.+.|++++|.+.|++..+.- +.. ......+++ .+.. ..+...|..+..+|.+
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~-------~~~~-~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADG-------AKLQ-PVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHH-------GGGH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHH-------HHHH-HHHHHHHHHHHHHHHh
Confidence 5556667777777777777777765410 000 000000000 0000 0133455555566666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 037477 456 ANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRP-WQATFKTLIEKLLGARRLEEAM 534 (639)
Q Consensus 456 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~ 534 (639)
.|++++|.+.+++.++.. +-+...+..+..+|...|++++|...|++..+. .| +...+..+...+...++.+++.
T Consensus 286 ~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l---~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 286 MSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI---APEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp TTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666665543 224555555556666666666666666665544 22 3444455555555555555544
Q ss_pred H
Q 037477 535 N 535 (639)
Q Consensus 535 ~ 535 (639)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 3
No 184
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.43 E-value=0.0025 Score=65.18 Aligned_cols=129 Identities=14% Similarity=0.039 Sum_probs=81.5
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 037477 408 NITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPD--------------IKTWTILIQGHCAANEVDRALLCFAKMMEKN 473 (639)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--------------~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 473 (639)
...|..+...|.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..+++.++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34566666777777777777777777665322111 4667777777777777777777777777754
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHH-HHHHH
Q 037477 474 YDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW-QATFKTLIEKLLGARRLEEAMN-LLRLM 540 (639)
Q Consensus 474 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~-~~~~m 540 (639)
+.+...|..+..+|...|++++|...|++..+. .|+ ...+..+..++.+.|+.+++.. ++..|
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV---NPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---C----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335666777777777777777777777777653 332 3355566666666666665543 33433
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.43 E-value=0.0024 Score=54.49 Aligned_cols=63 Identities=8% Similarity=0.078 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 037477 444 KTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 444 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (639)
..|..+..+|.+.|++++|...+++.++.. +.+...|..+..+|...|++++|...|+...+.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 455566666666666666666666666653 334556666666666666666666666666543
No 186
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.39 E-value=0.0017 Score=66.34 Aligned_cols=129 Identities=13% Similarity=0.013 Sum_probs=102.4
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC--------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037477 375 VYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPD--------------NITYSQVIFGLCKAGRFEDACNVLDEMEENGCI 440 (639)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 440 (639)
.+..+...|.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..|++..+....
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 466778889999999999999999887531111 578889999999999999999999999886543
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHH-HHHHHH
Q 037477 441 PDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYK-LLVEMI 505 (639)
Q Consensus 441 p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m~ 505 (639)
+...|..+..+|...|++++|...|++.++.. +-+...+..+..++.+.++.+++.+ ++..|.
T Consensus 350 -~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 350 -NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999864 3355677778888888888877653 444443
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.32 E-value=0.0029 Score=54.01 Aligned_cols=98 Identities=12% Similarity=0.037 Sum_probs=82.0
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHC--------C---------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037477 375 VYDGIHRALTKLGRFDEAEKMMKAMKNA--------G---------FEPDNITYSQVIFGLCKAGRFEDACNVLDEMEEN 437 (639)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 437 (639)
.+......+.+.|++++|...|....+. . -+.+...|..+..+|.+.|++++|+..+++..+.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4556778889999999999999988764 1 0123457888899999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 037477 438 GCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKN 473 (639)
Q Consensus 438 ~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 473 (639)
... +...|..+..+|...|++++|...|++.++..
T Consensus 93 ~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 93 EET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp STT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 533 67899999999999999999999999999874
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.31 E-value=0.0028 Score=62.60 Aligned_cols=132 Identities=14% Similarity=0.078 Sum_probs=89.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037477 410 TYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFL 489 (639)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 489 (639)
.+..+...+.+.|++++|+..|++..+.- +.. ......+.+ .+.. +.+..+|..+..+|.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~-------~~~~-~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADG-------AKLQ-PVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHH-------GGGH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHH-------HHHH-HHHHHHHHHHHHHHH
Confidence 46667788888999999999888877520 000 001111111 1110 124567888889999
Q ss_pred cCCChhHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHH----hhcCCHHH
Q 037477 490 SQKRVNGAYKLLVEMIEKVRLRP-WQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYI----SKFGTVED 564 (639)
Q Consensus 490 ~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll----~~~g~~~~ 564 (639)
+.|++++|+..+++..+. .| +...|..+..+|...|++++|++.|++..+. .|+.......+ ...++.++
T Consensus 285 ~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEI---DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp HTTCHHHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHh---CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999864 34 4778888999999999999999999999873 45544333222 34455555
Q ss_pred HH
Q 037477 565 AS 566 (639)
Q Consensus 565 a~ 566 (639)
+.
T Consensus 360 a~ 361 (370)
T 1ihg_A 360 KE 361 (370)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 189
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.27 E-value=0.0015 Score=66.92 Aligned_cols=132 Identities=12% Similarity=0.016 Sum_probs=82.2
Q ss_pred HHHcCCChhHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHh
Q 037477 275 VLARHESVRDFWNVVEEMKKE---GYEM----DIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSIS 347 (639)
Q Consensus 275 ~~~~~g~~~~a~~~~~~m~~~---g~~p----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~ 347 (639)
.+...|++++|+.++++..+. -+.+ ...+++.|...|...|++++|+.++++..+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i----------------- 380 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDG----------------- 380 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----------------
Confidence 356789999999999887652 1122 3567999999999999999999999877531
Q ss_pred hcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHH-----CCCC-CC-HHhHHHHHHHHHh
Q 037477 348 SINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKN-----AGFE-PD-NITYSQVIFGLCK 420 (639)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~-~~-~~~~~~li~~~~~ 420 (639)
.........+....+++.|...|...|++++|+.++++..+ .|.. |+ ..+.+.+-.++..
T Consensus 381 -------------~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 447 (490)
T 3n71_A 381 -------------YMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEME 447 (490)
T ss_dssp -------------HHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred -------------HHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 11111111112234577777778888888888777776543 1211 11 1223334445555
Q ss_pred cCCHHHHHHHHHHHHH
Q 037477 421 AGRFEDACNVLDEMEE 436 (639)
Q Consensus 421 ~g~~~~A~~~~~~m~~ 436 (639)
.+.+++|+.+|.++++
T Consensus 448 ~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 448 LRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566666666665543
No 190
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.21 E-value=0.0018 Score=51.59 Aligned_cols=77 Identities=12% Similarity=0.055 Sum_probs=33.8
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 037477 392 AEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMM 470 (639)
Q Consensus 392 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 470 (639)
|.+.|++..+.. +.+...+..+...|...|++++|...|++..+.... +...|..+..+|...|++++|...|++..
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444332 223444444444444455555555555444443211 23344444444444444444444444443
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.20 E-value=0.0012 Score=64.47 Aligned_cols=144 Identities=10% Similarity=0.013 Sum_probs=73.5
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 037477 376 YDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCA 455 (639)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~ 455 (639)
+..+...+.+.|++++|...|++.... .|+... +...|+.+++...+ . ...|..+..+|.+
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla~~~~~ 242 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H-------HHHHHHHHHHHHH
Confidence 555677788889999999999887754 343321 11223333332221 1 1366777777778
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCC-HHHHHHHHHH-HHhcCCHHHH
Q 037477 456 ANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPW-QATFKTLIEK-LLGARRLEEA 533 (639)
Q Consensus 456 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~-~~~~g~~~~A 533 (639)
.|++++|...+++.++.. +.+...|..+..+|...|++++|...|+...+. .|+ ...+..+... ....+..+++
T Consensus 243 ~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l---~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 243 LKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY---APDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp TTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888777764 336677777777888888888888888776543 333 2233333333 2234566677
Q ss_pred HHHHHHHHh
Q 037477 534 MNLLRLMKK 542 (639)
Q Consensus 534 ~~~~~~m~~ 542 (639)
..+|..|..
T Consensus 319 ~~~~~~~l~ 327 (338)
T 2if4_A 319 KEMYKGIFK 327 (338)
T ss_dssp ---------
T ss_pred HHHHHHhhC
Confidence 777777765
No 192
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.19 E-value=0.0015 Score=66.76 Aligned_cols=125 Identities=12% Similarity=0.000 Sum_probs=67.5
Q ss_pred HHHccCChhHHHHHHHHHHHCC---C---CCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCC-CC-HHHHH
Q 037477 382 ALTKLGRFDEAEKMMKAMKNAG---F---EPD-NITYSQVIFGLCKAGRFEDACNVLDEMEE-----NGCI-PD-IKTWT 447 (639)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m~~~g---~---~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~-p~-~~t~~ 447 (639)
.+...|++++|+.++++..+.. + .|+ ..+++.|...|...|++++|..++++..+ .|.. |+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3456677777777776655421 1 111 24566666777777777777776666542 1211 11 24566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH-----cCCC-C-CHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 037477 448 ILIQGHCAANEVDRALLCFAKMME-----KNYD-A-DADLLDVLINGFLSQKRVNGAYKLLVEMIE 506 (639)
Q Consensus 448 ~li~~~~~~g~~~~a~~~~~~m~~-----~g~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (639)
.|...|...|++++|..++++.++ .|.. | ...+.+.+-.++...+.+++|..+|..+.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666665544 1211 1 122233444455555556666666655544
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.18 E-value=0.012 Score=49.24 Aligned_cols=93 Identities=16% Similarity=0.106 Sum_probs=48.4
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHCCCCCC--------H-----HhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C
Q 037477 377 DGIHRALTKLGRFDEAEKMMKAMKNAGFEPD--------N-----ITYSQVIFGLCKAGRFEDACNVLDEMEEN-----G 438 (639)
Q Consensus 377 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--------~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~ 438 (639)
......+.+.|++++|...|++..+.. |+ . ..|+.+..++.+.|++++|+..+++..+. .
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 334455666677777777777666542 22 1 14555555555555555555555555543 0
Q ss_pred CCCC-HHHH----HHHHHHHHHcCCHHHHHHHHHHHHH
Q 037477 439 CIPD-IKTW----TILIQGHCAANEVDRALLCFAKMME 471 (639)
Q Consensus 439 ~~p~-~~t~----~~li~~~~~~g~~~~a~~~~~~m~~ 471 (639)
+.|+ ...| .....++...|++++|+..|++.++
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 0222 2344 4444555555555555555555443
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.18 E-value=0.0071 Score=50.70 Aligned_cols=95 Identities=15% Similarity=0.047 Sum_probs=53.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-----CH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C
Q 037477 410 TYSQVIFGLCKAGRFEDACNVLDEMEENGCI-P-----DI-----KTWTILIQGHCAANEVDRALLCFAKMMEK-----N 473 (639)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p-----~~-----~t~~~li~~~~~~g~~~~a~~~~~~m~~~-----g 473 (639)
.+......+.+.|++++|+..|++..+.... | +. ..|+.+..++.+.|++++|+..+++.++. .
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 3455566677788888888888887764322 0 11 25666666666666666666666666553 0
Q ss_pred CCC-CHHHH----HHHHHHHHcCCChhHHHHHHHHH
Q 037477 474 YDA-DADLL----DVLINGFLSQKRVNGAYKLLVEM 504 (639)
Q Consensus 474 ~~~-~~~~~----~~li~~~~~~g~~~~A~~~~~~m 504 (639)
+.| +...| ...-.++...|++++|+..|+..
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA 128 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 128 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence 122 22333 44444445555555555555444
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.17 E-value=0.011 Score=48.82 Aligned_cols=109 Identities=13% Similarity=-0.047 Sum_probs=59.5
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 037477 388 RFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCA----ANEVDRAL 463 (639)
Q Consensus 388 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~----~g~~~~a~ 463 (639)
++++|.+.|++..+.| .++.. |-..|...+.+++|.+.|++..+.| +...+..+-..|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4556666666666555 22222 4444555555666666666665543 44555555555555 55666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHHh
Q 037477 464 LCFAKMMEKNYDADADLLDVLINGFLS----QKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 464 ~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~ 507 (639)
+.|++..+.| +...+..|-..|.. .+++++|..+|+...+.
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 6666665554 34444555555555 45555555555555443
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.12 E-value=0.00063 Score=53.62 Aligned_cols=91 Identities=12% Similarity=-0.004 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH-hH---HHHHhhcCCHHHHHHHHHHhhcCCCCC------HHHHHH
Q 037477 516 TFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPE-PF---VQYISKFGTVEDASEFLKALSVKEYPS------SAAYLQ 585 (639)
Q Consensus 516 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~---~~ll~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~ 585 (639)
.|..+...+...|++++|++.+++..+. .|+.. .+ ...+...|++++|...+++..+..|.+ ...+..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 3444444444555555555555544442 12211 11 112234455555555555555554444 555666
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCc
Q 037477 586 VFESFFNEGRHYEAKDLLYKCPH 608 (639)
Q Consensus 586 l~~~~~~~g~~~~A~~~~~~m~~ 608 (639)
+..++...|++++|.+.+++++.
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~~~~ 106 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVDELPE 106 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSSSCSS
T ss_pred HHHHHHHHHhHhhhHhHHHHhHH
Confidence 66666667776666666666544
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.05 E-value=0.021 Score=47.06 Aligned_cols=112 Identities=12% Similarity=-0.054 Sum_probs=82.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCChhHH
Q 037477 422 GRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLS----QKRVNGA 497 (639)
Q Consensus 422 g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A 497 (639)
+++++|+..|++..+.|. |+.. +-..|...+.+++|.+.|++..+.| +...+..|-..|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 467788888888887762 3333 6666667777888888888888876 56677777777777 7788888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCC
Q 037477 498 YKLLVEMIEKVRLRPWQATFKTLIEKLLG----ARRLEEAMNLLRLMKKQNY 545 (639)
Q Consensus 498 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~ 545 (639)
..+|+...+. | +...+..|-..|.. .++.++|.+.|++..+.|.
T Consensus 81 ~~~~~~Aa~~-g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGL-N---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcC-C---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 8888888765 3 45566677777777 7788888888888877653
No 198
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.00 E-value=0.0022 Score=62.63 Aligned_cols=142 Identities=8% Similarity=0.047 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037477 443 IKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIE 522 (639)
Q Consensus 443 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 522 (639)
...+..+...+.+.|++++|...|++.++.. |+... +...|+.+++...+ . ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHH
Confidence 4567777778888889999999998887753 43321 12223333322211 1 115555666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCh-HhH---HHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHH-HhcCCHH
Q 037477 523 KLLGARRLEEAMNLLRLMKKQNYPPFP-EPF---VQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESF-FNEGRHY 597 (639)
Q Consensus 523 ~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~---~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 597 (639)
+|.+.|++++|+..+++..+. .|+. ..+ ...+...|++++|...|++..+..|.+...+..+.... ...+..+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 666677777777777666652 2322 111 22234567777777777777666666666666665553 3345556
Q ss_pred HHHHHHhhC
Q 037477 598 EAKDLLYKC 606 (639)
Q Consensus 598 ~A~~~~~~m 606 (639)
++.+++++|
T Consensus 317 ~a~~~~~~~ 325 (338)
T 2if4_A 317 KQKEMYKGI 325 (338)
T ss_dssp ---------
T ss_pred HHHHHHHHh
Confidence 666666665
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.98 E-value=0.0066 Score=48.11 Aligned_cols=80 Identities=14% Similarity=0.063 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 037477 426 DACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMI 505 (639)
Q Consensus 426 ~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 505 (639)
+|+..|++..+... .+...+..+...|...|++++|...+++.++.. +.+...|..+..+|...|++++|...|+...
T Consensus 3 ~a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45667777766543 256777788888888888888888888888764 3456677777888888888888888888776
Q ss_pred Hh
Q 037477 506 EK 507 (639)
Q Consensus 506 ~~ 507 (639)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.92 E-value=0.0015 Score=51.34 Aligned_cols=62 Identities=11% Similarity=0.060 Sum_probs=30.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 037477 410 TYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEK 472 (639)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 472 (639)
.|..+...+...|++++|...|++..+.... +...|..+..+|...|++++|.+.+++.++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3444444555555555555555555443221 3444555555555555555555555555543
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.90 E-value=0.011 Score=44.19 Aligned_cols=60 Identities=17% Similarity=0.237 Sum_probs=29.5
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037477 376 YDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEE 436 (639)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 436 (639)
+..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...|++..+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3344444555555555555555554432 22344444455555555555555555555444
No 202
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.85 E-value=0.062 Score=56.24 Aligned_cols=175 Identities=9% Similarity=0.008 Sum_probs=126.0
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhc
Q 037477 280 ESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRM----------MEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSI 349 (639)
Q Consensus 280 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~ 349 (639)
..-++|++.++.+.... +-+...|+.--.++...|+ ++++++.++.+.+.. |
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--p--------------- 104 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--P--------------- 104 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--T---------------
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--C---------------
Confidence 34567899999998874 3355667766555555555 777777777776431 1
Q ss_pred CCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC--ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC-CHHH
Q 037477 350 NNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLG--RFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAG-RFED 426 (639)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~ 426 (639)
-+..+|+.-.-++.+.| +++++++.++++.+.. +.+...|+.-...+.+.| .+++
T Consensus 105 ---------------------K~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~ 162 (567)
T 1dce_A 105 ---------------------KSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAE 162 (567)
T ss_dssp ---------------------TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHH
T ss_pred ---------------------CCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHH
Confidence 12334444445566677 6799999999999876 457888888888888888 8999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 037477 427 ACNVLDEMEENGCIPDIKTWTILIQGHCAA--------------NEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQK 492 (639)
Q Consensus 427 A~~~~~~m~~~~~~p~~~t~~~li~~~~~~--------------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 492 (639)
+++.++++.+..+. |...|+.....+.+. +.++++.+.+++.+... +-|...|+-+-..+.+.+
T Consensus 163 el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~ 240 (567)
T 1dce_A 163 ELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAE 240 (567)
T ss_dssp HHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCC
Confidence 99999999887655 788888877776663 45788899998888865 446777877777777777
Q ss_pred ChhH
Q 037477 493 RVNG 496 (639)
Q Consensus 493 ~~~~ 496 (639)
+.++
T Consensus 241 ~~~~ 244 (567)
T 1dce_A 241 PHDV 244 (567)
T ss_dssp CCSC
T ss_pred Cccc
Confidence 6444
No 203
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.84 E-value=0.043 Score=57.44 Aligned_cols=135 Identities=8% Similarity=-0.072 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC--ChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHH
Q 037477 459 VDRALLCFAKMMEKNYDADADLLDVLINGFLSQK--RVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGAR-RLEEAMN 535 (639)
Q Consensus 459 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~ 535 (639)
++++++.++.+.+.. +-+..+|+.--..+.+.| +++++++.++.+.+.. .-+...|+.---.+.+.| .++++++
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~ 165 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELA 165 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHH
Confidence 455555555555443 223444444444444445 3455555555555441 113334444333344444 4555555
Q ss_pred HHHHHHhCCCCCC-hHhHH---HHHhh--------------cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH
Q 037477 536 LLRLMKKQNYPPF-PEPFV---QYISK--------------FGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHY 597 (639)
Q Consensus 536 ~~~~m~~~~~~p~-~~~~~---~ll~~--------------~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 597 (639)
.++++.+.. |+ ...|. .++.. .+.++++.+++++.....|.+...|..+...+.+.|+.+
T Consensus 166 ~~~~~I~~~--p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 166 FTDSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp HHHTTTTTT--CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCS
T ss_pred HHHHHHHHC--CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCcc
Confidence 555554422 21 11111 11111 245788999999988889999999999999998888855
Q ss_pred H
Q 037477 598 E 598 (639)
Q Consensus 598 ~ 598 (639)
+
T Consensus 244 ~ 244 (567)
T 1dce_A 244 V 244 (567)
T ss_dssp C
T ss_pred c
Confidence 5
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.83 E-value=0.014 Score=43.45 Aligned_cols=63 Identities=16% Similarity=0.214 Sum_probs=33.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 037477 409 ITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEK 472 (639)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 472 (639)
..+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++..+.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444555555556666666655555543321 3445555555555555555555555555554
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.76 E-value=0.0069 Score=46.68 Aligned_cols=62 Identities=16% Similarity=0.052 Sum_probs=29.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 037477 408 NITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMM 470 (639)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 470 (639)
...+..+...|...|++++|+..|++..+.... +...|..+..+|...|++++|.+.+++.+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444455555555555555555554443322 23344445555555555555555554444
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.52 E-value=0.012 Score=45.33 Aligned_cols=63 Identities=11% Similarity=-0.014 Sum_probs=36.2
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037477 372 SKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEME 435 (639)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 435 (639)
+...+..+..+|...|++++|...|++..+.. +.+...|..+..+|...|++++|...|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555566666666666666666665543 2234455556666666666666666665554
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.52 E-value=0.0096 Score=49.78 Aligned_cols=87 Identities=10% Similarity=0.025 Sum_probs=56.4
Q ss_pred HccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH----------HHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037477 384 TKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRF----------EDACNVLDEMEENGCIPDIKTWTILIQGH 453 (639)
Q Consensus 384 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~----------~~A~~~~~~m~~~~~~p~~~t~~~li~~~ 453 (639)
.+.+.+++|.+.++...+.. +.+...|+.+..++...+++ ++|+..|++..+.... +...|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 34456777788887777664 44677777777777776654 4777777777665432 455666677777
Q ss_pred HHcC-----------CHHHHHHHHHHHHHc
Q 037477 454 CAAN-----------EVDRALLCFAKMMEK 472 (639)
Q Consensus 454 ~~~g-----------~~~~a~~~~~~m~~~ 472 (639)
...| ++++|.+.|++.++.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 6653 566666666666654
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.50 E-value=0.0099 Score=49.71 Aligned_cols=98 Identities=10% Similarity=0.087 Sum_probs=63.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037477 419 CKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEV----------DRALLCFAKMMEKNYDADADLLDVLINGF 488 (639)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~----------~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (639)
.+.+.+++|...++...+.... +...|+.+..++...+++ ++|+..|++.++.. +-+...|..+-.+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 3556778888888888876543 677787777777777654 47777777777764 23556667777777
Q ss_pred HcCC-----------ChhHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 037477 489 LSQK-----------RVNGAYKLLVEMIEKVRLRPWQATFKTLI 521 (639)
Q Consensus 489 ~~~g-----------~~~~A~~~~~~m~~~~~~~p~~~~~~~li 521 (639)
...| ++++|...|++..+. .|+...|...+
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l---~P~~~~y~~al 131 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE---QPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 6653 566666666666543 45544444433
No 209
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.29 E-value=0.062 Score=59.38 Aligned_cols=45 Identities=11% Similarity=0.158 Sum_probs=22.3
Q ss_pred ccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037477 385 KLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEME 435 (639)
Q Consensus 385 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 435 (639)
..|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.
T Consensus 664 ~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 664 KVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 345555555553322 234455555555555555555555555443
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.79 E-value=0.031 Score=56.09 Aligned_cols=93 Identities=14% Similarity=0.062 Sum_probs=64.5
Q ss_pred cCCChhHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcC
Q 037477 278 RHESVRDFWNVVEEMKKE---GYEM----DIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSIN 350 (639)
Q Consensus 278 ~~g~~~~a~~~~~~m~~~---g~~p----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~ 350 (639)
..|++++|..++++..+. -+.| ...+++.+..+|...|++++|+.++++..+.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i-------------------- 369 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKP-------------------- 369 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--------------------
Confidence 457899999999887652 1222 2577999999999999999999999987531
Q ss_pred CCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 037477 351 NPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMK 400 (639)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 400 (639)
.........+....+++.+...|...|++++|+.++++..
T Consensus 370 ----------~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 370 ----------YSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp ----------HHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----------HHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 1111111111123457778888888888888888877765
No 211
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.67 E-value=0.056 Score=54.24 Aligned_cols=92 Identities=14% Similarity=0.019 Sum_probs=59.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC---CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCC-CC-CHHH
Q 037477 415 IFGLCKAGRFEDACNVLDEMEENG---CIP----DIKTWTILIQGHCAANEVDRALLCFAKMME-----KNY-DA-DADL 480 (639)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~~---~~p----~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~-~~-~~~~ 480 (639)
+..+.+.|++++|+.++++..+.. ..| ...+++.+...|...|++++|+.++++.++ .|. .| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444556778888888887776421 112 235677777788888888888888777665 121 11 2345
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHH
Q 037477 481 LDVLINGFLSQKRVNGAYKLLVEMIE 506 (639)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (639)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 66777777778888777777776543
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.62 E-value=0.45 Score=45.85 Aligned_cols=72 Identities=10% Similarity=-0.016 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHh
Q 037477 475 DADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEP 551 (639)
Q Consensus 475 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 551 (639)
+.+..+|.++...+...|++++|...+++.... .|+...|..+-..+.-.|++++|.+.+++... +.|...+
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L---n~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t 345 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL---EMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANT 345 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcCh
Confidence 345555555555555556666666666666654 25555555555555666666666666666555 3344444
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.60 E-value=0.04 Score=55.28 Aligned_cols=63 Identities=13% Similarity=0.070 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHh----CC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037477 479 DLLDVLINGFLSQKRVNGAYKLLVEMIEK----VR-LRPW-QATFKTLIEKLLGARRLEEAMNLLRLMK 541 (639)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 541 (639)
.+++.|..+|...|++++|..++++..+. +| -.|+ ..+|+.|...|...|++++|+.++++..
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 44555555555555555555555554321 11 1222 3345556666666666666666665544
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.58 E-value=0.7 Score=44.53 Aligned_cols=61 Identities=7% Similarity=-0.075 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhH---HHHHhhcCCHHHHHHHHHHhhcC
Q 037477 513 WQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPF---VQYISKFGTVEDASEFLKALSVK 575 (639)
Q Consensus 513 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~---~~ll~~~g~~~~a~~~~~~~~~~ 575 (639)
+...|..+...+...|++++|...++++...+ |+...+ ..++.-.|+.++|.+.+++....
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 44455555444444566666666666665533 443322 11223456666666666555554
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.54 E-value=0.066 Score=53.77 Aligned_cols=100 Identities=9% Similarity=0.025 Sum_probs=68.7
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCC---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 037477 271 GILRVLARHESVRDFWNVVEEMKKEG---YEM----DIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLL 343 (639)
Q Consensus 271 ~li~~~~~~g~~~~a~~~~~~m~~~g---~~p----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll 343 (639)
..+..+.+.|++++|+.++++..+.. +.| ...+++.+...|...|++++|+.++++..+.
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i------------- 358 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEP------------- 358 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-------------
Confidence 34556778899999999999987631 222 2567899999999999999999999877531
Q ss_pred HHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 037477 344 RSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMK 400 (639)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 400 (639)
.........+....+++.+...|...|++++|+.++++..
T Consensus 359 -----------------~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 359 -----------------YRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp -----------------HHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -----------------HHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 1111111111123456777777888888888877777654
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.27 E-value=0.14 Score=38.73 Aligned_cols=55 Identities=16% Similarity=0.242 Sum_probs=25.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 037477 417 GLCKAGRFEDACNVLDEMEENGCIPDIK-TWTILIQGHCAANEVDRALLCFAKMMEK 472 (639)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~m~~~ 472 (639)
.+.+.|++++|...|++..+.... +.. .|..+..+|...|++++|.+.|++.++.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344445555555555554443211 233 4444444555555555555555555443
No 217
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.16 E-value=0.059 Score=40.62 Aligned_cols=60 Identities=17% Similarity=0.026 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCccccCChhHHHhhh
Q 037477 562 VEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHHIRQDSKISLLFG 621 (639)
Q Consensus 562 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~~ 621 (639)
.++|..++++..+..|.+......+...+.+.|++++|++.|+++.......+|...+-.
T Consensus 25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~~i~~ 84 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRVTIIE 84 (93)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence 688899999999888999999999999999999999999999997444333777665543
No 218
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.14 E-value=0.58 Score=51.46 Aligned_cols=151 Identities=12% Similarity=0.043 Sum_probs=82.3
Q ss_pred HccCChhHHHH-HHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 037477 384 TKLGRFDEAEK-MMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRA 462 (639)
Q Consensus 384 ~~~g~~~~A~~-~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a 462 (639)
...+++++|.+ ++..+ ++......++..+.+.|.+++|.++.+. .. .-.......|+++.|
T Consensus 610 ~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTLA 671 (814)
T ss_dssp HHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHHH
Confidence 45677777766 44221 1122236666777777777777765421 11 112334567777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 463 LLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 463 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
.++.+.+ .+...|..+...+.+.|+++.|.+.|..+.+ |..+...|...|+.+...++-+....
T Consensus 672 ~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 672 RDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 7765332 3567777888888888888888888776632 33444445556666655554444443
Q ss_pred CCCCCChHhHHHHHhhcCCHHHHHHHHHH
Q 037477 543 QNYPPFPEPFVQYISKFGTVEDASEFLKA 571 (639)
Q Consensus 543 ~~~~p~~~~~~~ll~~~g~~~~a~~~~~~ 571 (639)
.| +...-..++.+.|++++|.+++.+
T Consensus 736 ~~---~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 736 TG---KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp TT---CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cC---chHHHHHHHHHcCCHHHHHHHHHH
Confidence 22 111112223344555555554433
No 219
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.14 E-value=1.3 Score=37.49 Aligned_cols=103 Identities=8% Similarity=0.115 Sum_probs=69.3
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCc
Q 037477 274 RVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPD 353 (639)
Q Consensus 274 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 353 (639)
......|+++.|.++.+++. +...|..|.......|+++-|.+.|....+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D------------------------ 62 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQHS------------------------ 62 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC------------------------
Confidence 34567899999998887762 788899999999999999999999988753
Q ss_pred hhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 037477 354 LGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDE 433 (639)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 433 (639)
+..+.-.|.-.|+.++..++-+.....| -++.....+...|+++++.++|.+
T Consensus 63 ----------------------~~~L~~Ly~~tg~~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 63 ----------------------FDKLSFLYLVTGDVNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp ----------------------HHHHHHHHHHHTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHhCCHHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2333344455566655555544444443 145555556667777777776644
Q ss_pred H
Q 037477 434 M 434 (639)
Q Consensus 434 m 434 (639)
.
T Consensus 115 ~ 115 (177)
T 3mkq_B 115 G 115 (177)
T ss_dssp T
T ss_pred C
Confidence 3
No 220
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.61 E-value=0.94 Score=38.37 Aligned_cols=99 Identities=13% Similarity=0.124 Sum_probs=52.1
Q ss_pred HccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 037477 384 TKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRAL 463 (639)
Q Consensus 384 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~ 463 (639)
...|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+.++..
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 4456666666665544 2455566666666666666666666655443 233334444555555544
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 037477 464 LCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVE 503 (639)
Q Consensus 464 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 503 (639)
.+-+.....|- ++.....+.-.|+++++.++|.+
T Consensus 81 kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 81 KMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444443331 33334444555666666665543
No 221
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.59 E-value=1.4 Score=35.12 Aligned_cols=139 Identities=14% Similarity=0.127 Sum_probs=90.6
Q ss_pred ccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 037477 385 KLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALL 464 (639)
Q Consensus 385 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~ 464 (639)
-.|.+++..++..+.... .+..-||.+|--....-+-+-..++++.+-+. .|. ..+|+......
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHH
Confidence 357788888888777653 24455666666665566666666666555432 222 23444444444
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 037477 465 CFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQN 544 (639)
Q Consensus 465 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 544 (639)
.+-.+ | -+...+...++.+..+|+-+.-.+++.++.. +..|+....-.+..+|.+.|+..+|.+++.+..+.|
T Consensus 83 C~~~~---n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 83 CGVIN---N--TLNEHVNKALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHT---T--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHh---c--chHHHHHHHHHHHHHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 44322 1 2344556677788888888888888888543 346677788888888999999999999988888887
Q ss_pred CC
Q 037477 545 YP 546 (639)
Q Consensus 545 ~~ 546 (639)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 64
No 222
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.53 E-value=0.31 Score=36.71 Aligned_cols=58 Identities=14% Similarity=0.172 Sum_probs=46.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 037477 449 LIQGHCAANEVDRALLCFAKMMEKNYDADAD-LLDVLINGFLSQKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 449 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (639)
....+...|++++|...+++.++.. +.+.. .+..+..+|...|++++|...|+...+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3456778899999999999988864 33556 7888888888999999999999988876
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.21 E-value=0.81 Score=34.22 Aligned_cols=20 Identities=20% Similarity=0.202 Sum_probs=7.9
Q ss_pred HHHHcCCChhHHHHHHHHHH
Q 037477 486 NGFLSQKRVNGAYKLLVEMI 505 (639)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~m~ 505 (639)
..+.+.|++++|...|+.+.
T Consensus 51 ~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 51 NDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 33333444444444444333
No 224
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.02 E-value=1.9 Score=34.39 Aligned_cols=69 Identities=16% Similarity=0.118 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC
Q 037477 264 HNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYK 333 (639)
Q Consensus 264 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~ 333 (639)
.+....+..++.+...|.-|+-.+++.++.. +.+|++...-.+..+|.+.|+..++.+++.+..+.|++
T Consensus 89 ~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 89 TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 3566778888999999999999999999644 33788999999999999999999999999999888763
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.57 E-value=0.43 Score=39.36 Aligned_cols=80 Identities=11% Similarity=0.129 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHcCCChhHHHHH
Q 037477 426 DACNVLDEMEENGCIPDIKTWTILIQGHCAAN---EVDRALLCFAKMMEKNYDA--DADLLDVLINGFLSQKRVNGAYKL 500 (639)
Q Consensus 426 ~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~ 500 (639)
.+.+-|.+..+.|. ++..+.-.+..++++.+ +.+++..++++..+.+ .| +...+-.|--+|.+.|++++|.++
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34444444444333 35555555555555555 4445555555555543 12 223333344455566666666666
Q ss_pred HHHHHHh
Q 037477 501 LVEMIEK 507 (639)
Q Consensus 501 ~~~m~~~ 507 (639)
++.+.+.
T Consensus 94 ~~~lL~i 100 (152)
T 1pc2_A 94 VRGLLQT 100 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 6655543
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=92.90 E-value=0.84 Score=37.61 Aligned_cols=81 Identities=19% Similarity=0.211 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHH
Q 037477 390 DEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAG---RFEDACNVLDEMEENGCIP--DIKTWTILIQGHCAANEVDRALL 464 (639)
Q Consensus 390 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p--~~~t~~~li~~~~~~g~~~~a~~ 464 (639)
..+.+.|.+..+.| .++..+...+..++++.+ ++++++.+|++..+.+ .| +...+-.+.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 34555566555555 367777777777777777 5667888888777654 23 23344455566788888888888
Q ss_pred HHHHHHHc
Q 037477 465 CFAKMMEK 472 (639)
Q Consensus 465 ~~~~m~~~ 472 (639)
.++.+++.
T Consensus 93 y~~~lL~i 100 (152)
T 1pc2_A 93 YVRGLLQT 100 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 88888776
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.72 E-value=0.77 Score=35.15 Aligned_cols=63 Identities=14% Similarity=0.099 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 037477 444 KTWTILIQGHCAANEVDRALLCFAKMMEKN------YDADADLLDVLINGFLSQKRVNGAYKLLVEMIE 506 (639)
Q Consensus 444 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (639)
.-+-.|...+.+.|+++.|...++...+.- -.+....+..|..+|.+.|+++.|..++++..+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 334444555555555555555555544420 012234444444444555555555555544443
No 228
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.71 E-value=14 Score=40.50 Aligned_cols=26 Identities=12% Similarity=0.202 Sum_probs=18.6
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHH
Q 037477 269 YNGILRVLARHESVRDFWNVVEEMKK 294 (639)
Q Consensus 269 ~~~li~~~~~~g~~~~a~~~~~~m~~ 294 (639)
|..++.++.+.++.+.+.++|..+.+
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55666677777777777777777764
No 229
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.29 E-value=2.3 Score=45.44 Aligned_cols=53 Identities=11% Similarity=0.031 Sum_probs=49.0
Q ss_pred HhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCc
Q 037477 556 ISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPH 608 (639)
Q Consensus 556 l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 608 (639)
+...|+++.|.++-++.....|.+..+|..|..+|...|+|+.|+-.+..||-
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScPm 399 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMPR 399 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred HhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 34679999999999999998999999999999999999999999999999973
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.23 E-value=2 Score=39.61 Aligned_cols=63 Identities=16% Similarity=0.193 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-CChhHHHHHHHHHHH
Q 037477 444 KTWTILIQGHCAA-----NEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQ-KRVNGAYKLLVEMIE 506 (639)
Q Consensus 444 ~t~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~ 506 (639)
..|..+...|.+. |+.++|.+.|++.++.+..-+..++......++.. |+.+++.+.+++...
T Consensus 200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~ 268 (301)
T 3u64_A 200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALA 268 (301)
T ss_dssp HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 3445555555552 55555555555555543211234444444444442 555555555555544
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=91.65 E-value=2.3 Score=32.32 Aligned_cols=62 Identities=13% Similarity=0.083 Sum_probs=32.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 037477 411 YSQVIFGLCKAGRFEDACNVLDEMEENG------CIPDIKTWTILIQGHCAANEVDRALLCFAKMMEK 472 (639)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 472 (639)
+..+...+...|+++.|...|+...+.- -.+....+..+..+|.+.|+++.|...+++..+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3444455555555555555555543310 1123445555666666666666666666666554
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.39 E-value=2.1 Score=34.95 Aligned_cols=110 Identities=13% Similarity=0.053 Sum_probs=65.6
Q ss_pred hhHHHHHHHHHccCCh------hHHHHHHHHHHHCCCCCCHH-hHHHHHH------HHHhcCCHHHHHHHHHHHHHCCCC
Q 037477 374 SVYDGIHRALTKLGRF------DEAEKMMKAMKNAGFEPDNI-TYSQVIF------GLCKAGRFEDACNVLDEMEENGCI 440 (639)
Q Consensus 374 ~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~~~~~-~~~~li~------~~~~~g~~~~A~~~~~~m~~~~~~ 440 (639)
.+|-..+...-+.|+. ++..++|++.... ++|+.. .|..-+. .+...+++++|.++|+.+.+..-.
T Consensus 14 d~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~hKk 92 (161)
T 4h7y_A 14 EDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANCKK 92 (161)
T ss_dssp HHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhHH
Confidence 3444444444445555 5666677766553 344421 1111111 112347888899999888765323
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037477 441 PDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLIN 486 (639)
Q Consensus 441 p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 486 (639)
- ...|....+--.+.|++..|.+++.+.+..+.+| ...+...|.
T Consensus 93 F-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 93 F-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp B-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 2 6677777777778899999999999888877665 334444443
No 233
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=91.39 E-value=6.1e-06 Score=80.59 Aligned_cols=328 Identities=12% Similarity=0.115 Sum_probs=202.7
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhhccchhHHHHHH
Q 037477 128 SSTVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKAKKASDLAALNQFHDGMVKEIAMDNVAKTLV 207 (639)
Q Consensus 128 ~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 207 (639)
.+..|..|-.+..+.+++.+|++.|-+ . -|+..|..++.++.+.|.+++....+++ .+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk---A---~Dps~y~eVi~~A~~~~~~edLv~yL~M----aR------------ 110 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK---A---DDPSSYMEVVQAANTSGNWEELVKYLQM----AR------------ 110 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC---C---SCCCSSSHHHHHTTTSSCCTTHHHHHHT----TS------------
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh---C---CChHHHHHHHHHHHhCCCHHHHHHHHHH----HH------------
Confidence 456799999999999999998877622 2 2667788899999999988887543221 11
Q ss_pred HHHhcCCchHHHHHHHhhccCcCCHHHHHHHHHHhccChHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 037477 208 DVVLGSDWDDKIGKKLEDMKIELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWN 287 (639)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 287 (639)
+. ..+...=+.|+-+|++.+++.+..+
T Consensus 111 ---------------------------------------------------k~--~ke~~IDteLi~ayAk~~rL~elEe 137 (624)
T 3lvg_A 111 ---------------------------------------------------KK--ARESYVETELIFALAKTNRLAELEE 137 (624)
T ss_dssp ---------------------------------------------------TT--CCSTTTTHHHHHHHHTSCSSSTTTS
T ss_pred ---------------------------------------------------HH--hcccccHHHHHHHHHhhCcHHHHHH
Confidence 11 1122333578888998888766544
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhc
Q 037477 288 VVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSINNPDLGLVFRVANKYESL 367 (639)
Q Consensus 288 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 367 (639)
++. .||..-...+.+-|...|.++.|.-+|..+..
T Consensus 138 fl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-------------------------------------- 172 (624)
T 3lvg_A 138 FIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-------------------------------------- 172 (624)
T ss_dssp TTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC--------------------------------------
T ss_pred HHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc--------------------------------------
Confidence 332 35666667788888888888888877766643
Q ss_pred CCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 037477 368 GNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWT 447 (639)
Q Consensus 368 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 447 (639)
|..|...+.+.|++..|.+.-++ ..++.||..+-.+|...+.+.-|.-.--.+.-. | .-..
T Consensus 173 --------~akLAstLV~L~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---a--deL~ 233 (624)
T 3lvg_A 173 --------FGRLASTLVHLGEYQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---A--DELE 233 (624)
T ss_dssp --------CTTTSSSSSSCSGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---S--SCCS
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---H--HHHH
Confidence 22244455666777766654322 236678888888888888887665443333321 1 1223
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 037477 448 ILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGA 527 (639)
Q Consensus 448 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 527 (639)
.++..|...|.+++-+.+++.-.... +.....|+-|.-.|++- +.++.++.++....+-++ ..+|++|.+.
T Consensus 234 elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNi-------pKviracE~a 304 (624)
T 3lvg_A 234 ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNI-------PKVLRAAEQA 304 (624)
T ss_dssp GGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCC-------TTTHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccH-------HHHHHHHHHH
Confidence 46677888888888888887776432 56778888888788875 445554444433222111 2356666666
Q ss_pred CCHHHHHHHHHHHHh----------C-CCCCChHhHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCH
Q 037477 528 RRLEEAMNLLRLMKK----------Q-NYPPFPEPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRH 596 (639)
Q Consensus 528 g~~~~A~~~~~~m~~----------~-~~~p~~~~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 596 (639)
..|.++.-++..-.+ + ...-+...|..++.+-++.|--.+.+.-..+. .+...+-|+.++...=+.
T Consensus 305 hLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e---~P~lL~DLL~vL~prlDh 381 (624)
T 3lvg_A 305 HLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF---KPLLLNDLLMVLSPRLDH 381 (624)
T ss_dssp TCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTS---CCTTSHHHHHHHCTTCCS
T ss_pred hhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHHh---ChHHHHHHHHhccccCCh
Confidence 666666655553221 1 01123345555666667776655555555544 333355566666666666
Q ss_pred HHHHHHHhhC
Q 037477 597 YEAKDLLYKC 606 (639)
Q Consensus 597 ~~A~~~~~~m 606 (639)
..+.++|++.
T Consensus 382 ~RvV~~~~k~ 391 (624)
T 3lvg_A 382 TRAVNYFSKV 391 (624)
T ss_dssp TTTHHHHHTT
T ss_pred HHHHHHHHhc
Confidence 6677777663
No 234
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=90.95 E-value=1.7 Score=40.09 Aligned_cols=94 Identities=13% Similarity=0.155 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHHHCCCCCC---HHhHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CCH
Q 037477 389 FDEAEKMMKAMKNAGFEPD---NITYSQVIFGLCK-----AGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAA-NEV 459 (639)
Q Consensus 389 ~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~-g~~ 459 (639)
...|...+++..+. .|+ ...|..+...|.+ -|+.++|.+.|++..+.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45566666666665 454 5578888888888 489999999999988865322467777788888874 889
Q ss_pred HHHHHHHHHHHHcCCC--CCHHHHHHH
Q 037477 460 DRALLCFAKMMEKNYD--ADADLLDVL 484 (639)
Q Consensus 460 ~~a~~~~~~m~~~g~~--~~~~~~~~l 484 (639)
+.+.+.+++.+..... |+....+.+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 9999999998887666 665544443
No 235
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.16 E-value=2 Score=35.73 Aligned_cols=141 Identities=10% Similarity=0.059 Sum_probs=75.8
Q ss_pred cCCCCCHHHHHH--HHHHHHcCCChhHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 472 KNYDADADLLDV--LINGFLSQKRVNGAYKLLVEMIEKVRLRPW-------QATFKTLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 472 ~g~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
.|+.|....|+. =+..+...|.++.|.-+.+-+....+..|+ ..++..+.+++...|++.+|...|+....
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 456665544433 356777888888888877765543233444 23556667788888999999988888653
Q ss_pred C-CCCCChHhHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhCCccccCChhHHHhhh
Q 037477 543 Q-NYPPFPEPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFNEGRHYEAKDLLYKCPHHIRQDSKISLLFG 621 (639)
Q Consensus 543 ~-~~~p~~~~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~~ 621 (639)
. ..-+...+....+.-...... . ...+.+.+.-..+..+|.+.|++++|+.+++.+|.+-+ .|.+..+++
T Consensus 92 ~~k~l~k~~s~~~~~~~~ss~p~------s--~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~R-t~kvnm~La 162 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTGNSASTPQ------S--QCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQR-TPKINMLLA 162 (167)
T ss_dssp HHHCC----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGC-CHHHHHHHH
T ss_pred HHHHHhcCCCccccccccCCCcc------c--ccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhc-CHHHHHHHH
Confidence 1 111111100000000000000 0 01233556666789999999999999999999986543 445555544
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=89.72 E-value=2.2 Score=33.73 Aligned_cols=81 Identities=12% Similarity=0.076 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHcCCChhHHHH
Q 037477 425 EDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDR---ALLCFAKMMEKNYDA--DADLLDVLINGFLSQKRVNGAYK 499 (639)
Q Consensus 425 ~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~---a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~ 499 (639)
..+.+-|.+....|. ++..+--.+..++.+..+... ++.+++...+.+ .| .....-.|.-++.+.|++++|.+
T Consensus 18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 334444444333332 344444444445555444433 555555554432 11 12222233345555555555555
Q ss_pred HHHHHHHh
Q 037477 500 LLVEMIEK 507 (639)
Q Consensus 500 ~~~~m~~~ 507 (639)
.++.+.+.
T Consensus 96 ~~~~lL~~ 103 (126)
T 1nzn_A 96 YVRGLLQT 103 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555543
No 237
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.71 E-value=7.3 Score=44.53 Aligned_cols=145 Identities=9% Similarity=0.019 Sum_probs=92.2
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----------------
Q 037477 378 GIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCI----------------- 440 (639)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----------------- 440 (639)
.++..+...|..+.+.++.... +.+...--.+..+|..+|++++|...|.+... |+.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccc
Confidence 4555666677777666654332 33444434455677889999999999976421 110
Q ss_pred ------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHcCCChhHHHHHHHHHHHhCCC
Q 037477 441 ------PDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADA----DLLDVLINGFLSQKRVNGAYKLLVEMIEKVRL 510 (639)
Q Consensus 441 ------p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 510 (639)
.-..-|..++..+.+.|.++.+.++-...++..-.-+. ..|..+.+++...|++++|...+-.+... ..
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~~ 969 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-PL 969 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-SS
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-HH
Confidence 01233667777888888888888877776664322222 25777888888888888888888877664 33
Q ss_pred CCCHHHHHHHHHHHHhcCCHH
Q 037477 511 RPWQATFKTLIEKLLGARRLE 531 (639)
Q Consensus 511 ~p~~~~~~~li~~~~~~g~~~ 531 (639)
-......+|..++..|..+
T Consensus 970 --r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 970 --KKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp --CHHHHHHHHHHHHHHCCHH
T ss_pred --HHHHHHHHHHHHHhCCChh
Confidence 2446666766666655543
No 238
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.34 E-value=8.1 Score=37.87 Aligned_cols=68 Identities=12% Similarity=0.127 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH----hCCCCCCHH
Q 037477 447 TILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIE----KVRLRPWQA 515 (639)
Q Consensus 447 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~p~~~ 515 (639)
..++..+...|+++++...+..+.... +.+...+..+|.++.+.|+..+|++.|+.+.+ ..|+.|...
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 345555666666666666666665543 44666666666666666666666666665433 236666543
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.13 E-value=26 Score=34.97 Aligned_cols=164 Identities=9% Similarity=0.053 Sum_probs=102.8
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCC-C----HHhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC--HH
Q 037477 376 YDGIHRALTKLGRFDEAEKMMKAMKNAGFEP-D----NITYSQVIFGLCKAGRFEDACNVLDEMEE----NGCIPD--IK 444 (639)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~--~~ 444 (639)
...+...|-..|++.+|.+++..+...-... + ...+...++.|...+++.+|..++.++.. ....|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 3457788999999999999999986431111 1 24566778899999999999999988742 222222 24
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHH-----HHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHH
Q 037477 445 TWTILIQGHCAANEVDRALLCFAKMMEK-NYDADADLL-----DVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFK 518 (639)
Q Consensus 445 t~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~ 518 (639)
.+...+..+...+++.+|.+.|.+..+. ....|...+ ..++.. .-.+..+.-..+....... ...++...|.
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~-iLa~~~~~~~~ll~~~~~~-~~~~~l~~~~ 297 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFL-VLSPYGNLQNDLIHKIQND-NNLKKLESQE 297 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH-HHSSCSSTTHHHHHSHHHH-SSCHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH-HhCCCCchHHHHHHHHhhc-ccccccHHHH
Confidence 5677788888899999998888877652 111233222 222222 2222223333334443333 2345677889
Q ss_pred HHHHHHHhc--CCHHHHHHHHHHHH
Q 037477 519 TLIEKLLGA--RRLEEAMNLLRLMK 541 (639)
Q Consensus 519 ~li~~~~~~--g~~~~A~~~~~~m~ 541 (639)
.++.+|... .+++.+.+.|....
T Consensus 298 ~L~k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 298 SLVKLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp HHHHHHHHCCSSSHHHHHHHTCSST
T ss_pred HHHHHHHhchHhhhHHHHHHHHHHh
Confidence 999988763 45666666665443
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=86.41 E-value=2.6 Score=45.00 Aligned_cols=56 Identities=13% Similarity=0.087 Sum_probs=47.4
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037477 379 IHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEME 435 (639)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 435 (639)
-...+...|+++.|+++-++....- +-+-.+|-.|..+|.+.|+++.|+-.++.+.
T Consensus 343 Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 343 QTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3455667899999999999988763 4457899999999999999999999998873
No 241
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=86.35 E-value=5.1 Score=31.62 Aligned_cols=86 Identities=12% Similarity=0.026 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhH---HHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHH
Q 037477 458 EVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNG---AYKLLVEMIEKVRLRP--WQATFKTLIEKLLGARRLEE 532 (639)
Q Consensus 458 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~~ 532 (639)
....+.+-|.+....|. ++..+-..+..++.+.....+ ++.+++++.+. + .| .....-.+.-++.+.|++++
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 34445555555555553 566665566666676665554 77777766553 1 13 12233334456777777777
Q ss_pred HHHHHHHHHhCCCCCC
Q 037477 533 AMNLLRLMKKQNYPPF 548 (639)
Q Consensus 533 A~~~~~~m~~~~~~p~ 548 (639)
|.+.++.+.+ +.|+
T Consensus 93 A~~~~~~lL~--~eP~ 106 (126)
T 1nzn_A 93 ALKYVRGLLQ--TEPQ 106 (126)
T ss_dssp HHHHHHHHHH--HCTT
T ss_pred HHHHHHHHHH--hCCC
Confidence 7777777776 4454
No 242
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.35 E-value=6.2 Score=29.50 Aligned_cols=63 Identities=8% Similarity=0.140 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037477 458 EVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIE 522 (639)
Q Consensus 458 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 522 (639)
+.-+..+-++.+....+.|+..+..+.+.+|.+.+++..|.++|+.++.+.+.. ..+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 444556666666667777777777777777777777777777777777664333 234555543
No 243
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=86.09 E-value=13 Score=30.40 Aligned_cols=63 Identities=13% Similarity=0.163 Sum_probs=47.6
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037477 387 GRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQ 451 (639)
Q Consensus 387 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~ 451 (639)
+++++|.++|+.+.+.+-.- ...|.....--.+.|++.+|.+++......+.+| .....+.|+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 89999999999997663333 6667766677778999999999999999888764 344444443
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.16 E-value=3.3 Score=40.69 Aligned_cols=67 Identities=16% Similarity=0.113 Sum_probs=40.7
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 037477 378 GIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEE-----NGCIPDIKT 445 (639)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~t 445 (639)
.++..+...|++++|...+..+.... +-+...|..+|.++.+.|+..+|++.|+...+ .|+.|...+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34555666667776666666665443 34555666667777777777777666666532 366665543
No 245
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=84.98 E-value=9.3 Score=28.58 Aligned_cols=62 Identities=21% Similarity=0.267 Sum_probs=38.4
Q ss_pred chhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHH
Q 037477 353 DLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVI 415 (639)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 415 (639)
|.-.+.+.+..+......|++.+..+.+++|-+.+++..|.++|+-.+..- .+...+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 444555566666666677777777777777777777777777777766442 22233455444
No 246
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.27 E-value=7.1 Score=26.72 Aligned_cols=41 Identities=10% Similarity=0.105 Sum_probs=36.6
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHhcCCChHHHHHHHHHHhh
Q 037477 81 ELENKLEELSPKLTHESVVYVLRKLDNDPEKASAFFNWVCD 121 (639)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~ 121 (639)
.....|+.+.+.++...+..+|....|+.+.|+..+-.|..
T Consensus 20 ~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ms~ 60 (67)
T 2dhy_A 20 QAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQMNL 60 (67)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Confidence 45566888999999999999999999999999999988876
No 247
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=82.63 E-value=32 Score=32.21 Aligned_cols=142 Identities=11% Similarity=0.056 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHH----HHHHHHHhCCCCCCHHHHHHH
Q 037477 445 TWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYK----LLVEMIEKVRLRPWQATFKTL 520 (639)
Q Consensus 445 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~----~~~~m~~~~~~~p~~~~~~~l 520 (639)
.|.++..=|.+.+++++|.+++..-- ..+.+.|....|-+ +.+...+ .++.++......+
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~-~~~~~~~~~~~rl 98 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDL-AEVKVDDISVARL 98 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCSHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHH-cCCCCCHHHHHHH
Confidence 45566667777888888887764422 12344455544444 3333333 4788888777777
Q ss_pred HHHHHhcCCHH-HHHHHHHHHH----hCCCCC-Ch----HhHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 037477 521 IEKLLGARRLE-EAMNLLRLMK----KQNYPP-FP----EPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESF 590 (639)
Q Consensus 521 i~~~~~~g~~~-~A~~~~~~m~----~~~~~p-~~----~~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 590 (639)
+..+.....-+ .=.++++++. +.|-.+ -. ..+...+.+.|++.+|+..|-.- ...++..+..++.-.
T Consensus 99 ~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~---~~~s~~~~a~~l~~w 175 (312)
T 2wpv_A 99 VRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG---THDSMIKYVDLLWDW 175 (312)
T ss_dssp HHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS---CHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC---CCccHHHHHHHHHHH
Confidence 77665532111 1123333333 222211 11 12333345667777777665311 111355555555555
Q ss_pred Hhc---CCHHHHHHHHhh
Q 037477 591 FNE---GRHYEAKDLLYK 605 (639)
Q Consensus 591 ~~~---g~~~~A~~~~~~ 605 (639)
... |...++--++-+
T Consensus 176 ~~~~~~~~~~e~dlf~~R 193 (312)
T 2wpv_A 176 LCQVDDIEDSTVAEFFSR 193 (312)
T ss_dssp HHHTTCCCHHHHHHHHHH
T ss_pred HHhcCCCCcchHHHHHHH
Confidence 554 666665444333
No 248
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.30 E-value=42 Score=33.40 Aligned_cols=233 Identities=9% Similarity=0.050 Sum_probs=112.6
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHC-CCCCCHHhHHHHHHHH----HhcCCHHHHHH--HHHHHHH--CC-CCC
Q 037477 372 SKSVYDGIHRALTKLGRFDEAEKMMKAMKNA-GFEPDNITYSQVIFGL----CKAGRFEDACN--VLDEMEE--NG-CIP 441 (639)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~----~~~g~~~~A~~--~~~~m~~--~~-~~p 441 (639)
+..+...++..|...|+++...+.+..+.+. |..+. ....++..+ ......+.... +.+.... .| +-.
T Consensus 55 ~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kifl 132 (445)
T 4b4t_P 55 SKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFV 132 (445)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHH
Confidence 4556677777777778877777766665543 22222 222333322 22232222111 1111100 11 111
Q ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHcCCChhHHHHHHHHHHHh-CCC--
Q 037477 442 ---DIKTWTILIQGHCAANEVDRALLCFAKMMEK--NYDAD---ADLLDVLINGFLSQKRVNGAYKLLVEMIEK-VRL-- 510 (639)
Q Consensus 442 ---~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~-- 510 (639)
.......|...|...|++.+|.+++..+... |.... ...+...+..|...+++..|..++..+... ...
T Consensus 133 E~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~ 212 (445)
T 4b4t_P 133 EVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPK 212 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCC
Confidence 1122345666777777777777777776542 22111 234555566777777777777777765421 111
Q ss_pred CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChHhHHHHH-----h--hcCCHHHHHHHHHHhhcC-CCCC
Q 037477 511 RPW--QATFKTLIEKLLGARRLEEAMNLLRLMKKQ-NYPPFPEPFVQYI-----S--KFGTVEDASEFLKALSVK-EYPS 579 (639)
Q Consensus 511 ~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll-----~--~~g~~~~a~~~~~~~~~~-~~~~ 579 (639)
.|+ ...|..++..+...+++.+|...|.+..+. ....+...+..++ + -.+....-..++...... .-+.
T Consensus 213 ~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~ 292 (445)
T 4b4t_P 213 YESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKK 292 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccc
Confidence 122 345566666777777777777766665431 1111111111111 0 011111111222222211 1123
Q ss_pred HHHHHHHHHHHHhc--CCHHHHHHHHhhC
Q 037477 580 SAAYLQVFESFFNE--GRHYEAKDLLYKC 606 (639)
Q Consensus 580 ~~~~~~l~~~~~~~--g~~~~A~~~~~~m 606 (639)
...|..++.+|... .+|+.+.+.+...
T Consensus 293 l~~~~~L~k~f~~~~L~~~~~~~~~~~~~ 321 (445)
T 4b4t_P 293 LESQESLVKLFTTNELMRWPIVQKTYEPV 321 (445)
T ss_dssp HHHHHHHHHHHHHCCSSSHHHHHHHTCSS
T ss_pred cHHHHHHHHHHHhchHhhhHHHHHHHHHH
Confidence 45677777777764 3577777766653
No 249
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=82.05 E-value=3.7 Score=27.36 Aligned_cols=47 Identities=17% Similarity=0.225 Sum_probs=39.7
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCC
Q 037477 81 ELENKLEELSPKLTHESVVYVLRKLDNDPEKASAFFNWVCDKKQFRPS 128 (639)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~ 128 (639)
+-...|..+.+.++...+..+|....|+.+.|...+-.|.. .++.|+
T Consensus 11 e~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~-~~~~~~ 57 (59)
T 1wgl_A 11 EDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGE-EPSGPS 57 (59)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSC-CCCSCC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcC-CCCCCC
Confidence 44456788899999999999999999999999999999887 555554
No 250
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=79.73 E-value=21 Score=28.33 Aligned_cols=63 Identities=8% Similarity=0.140 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037477 458 EVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIE 522 (639)
Q Consensus 458 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 522 (639)
|.-+..+-++.+...++.|+..+..+.+.+|-+.+++..|.++|+-++.+.+.. ...|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~--~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCc--hhhHHHHHH
Confidence 344456666677777788888888888888888888888888888887764433 335666553
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=79.29 E-value=31 Score=39.41 Aligned_cols=49 Identities=10% Similarity=0.112 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC----HHHHHHHHHHHhhcCC
Q 037477 303 TYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPS----VQDCSLLLRSISSINN 351 (639)
Q Consensus 303 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~----~~~~~~ll~~~~~~~~ 351 (639)
-|..++..+-+.+.++.+.++-....+..-.-+ ...|..+++++...+.
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ 953 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGK 953 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCC
Confidence 456677777777777777666555443211111 1245566666665554
No 252
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=77.53 E-value=25 Score=27.93 Aligned_cols=62 Identities=21% Similarity=0.267 Sum_probs=37.5
Q ss_pred chhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHH
Q 037477 353 DLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVI 415 (639)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 415 (639)
|.-++.+-+..+......|++.+..+.+++|-+.+|+..|.++|+-.+..- .+....|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 333455555555566667777777777777777777777777777666442 22333455444
No 253
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=74.78 E-value=44 Score=30.34 Aligned_cols=56 Identities=9% Similarity=-0.066 Sum_probs=47.4
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcC
Q 037477 274 RVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDG 330 (639)
Q Consensus 274 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 330 (639)
..+.+.|+++++++....-++.. +-|...-..++..+|-.|+|+.|.+-++...+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 45678899999999998888775 668888889999999999999999888877653
No 254
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=71.96 E-value=0.0053 Score=60.41 Aligned_cols=76 Identities=13% Similarity=0.078 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-HhHHHHHhhcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 037477 514 QATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFP-EPFVQYISKFGTVEDASEFLKALSVKEYPSSAAYLQVFESFFN 592 (639)
Q Consensus 514 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 592 (639)
+.||-.+-.+|...+.+.-|.-.--.+. +.||. ..+...+...|.+++-+.+++.-..........++-|.-.|++
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqicGLniI---vhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsK 275 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMCGLHIV---VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 275 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHhCchHHHHHHHhcchhc---ccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHh
Confidence 3466666666666666555444332232 11211 1222233444555555555555554444555555555555544
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=71.16 E-value=44 Score=27.76 Aligned_cols=60 Identities=8% Similarity=0.047 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 037477 412 SQVIFGLCKAGRFEDACNVLDEMEEN-GCIPD-------IKTWTILIQGHCAANEVDRALLCFAKMME 471 (639)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~-------~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 471 (639)
-.-+..+...|.++.|+-+.+.+... +..|+ ..++..+.+++...|++..|...|++.++
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34456666667777776666554321 11122 12445556666667777777777766554
No 256
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.10 E-value=47 Score=32.87 Aligned_cols=96 Identities=14% Similarity=0.033 Sum_probs=49.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCCHH----H
Q 037477 410 TYSQVIFGLCKAGRFEDACNVLDEMEENG--CIPDIKTWTILIQGHCAANEVDRALLCFAKMME---KNYDADAD----L 480 (639)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~~~~~----~ 480 (639)
++..+...|.+.|++++|.+.|.++.... ..--...+-.+|+.+...+++..+...+++... .+-.|+.. .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 34455555666666666666666655421 122234555566666666666666666665543 12122211 1
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHh
Q 037477 481 LDVLINGFLSQKRVNGAYKLLVEMIEK 507 (639)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (639)
|..+ .+...+++..|...|-+....
T Consensus 213 ~~gl--~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGI--HCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHH--GGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHhChHHHHHHHHHHHhcc
Confidence 1111 233456777777777666554
No 257
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=67.95 E-value=88 Score=32.84 Aligned_cols=29 Identities=3% Similarity=-0.026 Sum_probs=20.8
Q ss_pred CHHHHHHHH---HHH--HhcCCHHHHHHHHhhCC
Q 037477 579 SSAAYLQVF---ESF--FNEGRHYEAKDLLYKCP 607 (639)
Q Consensus 579 ~~~~~~~l~---~~~--~~~g~~~~A~~~~~~m~ 607 (639)
+..++..|. ..+ ...|+|++|++.+++.+
T Consensus 532 ~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L~ 565 (661)
T 2qx5_A 532 NKEICMLLLNISSIRELYFNKQWQETLSQMELLD 565 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 445555443 333 78999999999999974
No 258
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=67.10 E-value=14 Score=23.39 Aligned_cols=39 Identities=15% Similarity=0.148 Sum_probs=33.5
Q ss_pred HHHHhhhCCCCCHHHHHHHHHhcCCChHHHHHHHHHHhh
Q 037477 83 ENKLEELSPKLTHESVVYVLRKLDNDPEKASAFFNWVCD 121 (639)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~ 121 (639)
...|..+.|..+...+..+|....|+.+.|..++-.+.+
T Consensus 8 v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~~~ 46 (49)
T 1otr_A 8 LSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKEND 46 (49)
T ss_dssp HHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhccc
Confidence 356778899999999999999999999999998776643
No 259
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=67.08 E-value=1.3e+02 Score=31.47 Aligned_cols=267 Identities=13% Similarity=0.066 Sum_probs=143.1
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 037477 265 NTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLR 344 (639)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~ 344 (639)
....-+.-+..+++.+++......+.. .+.+...-.....+....|+..+|......+=..| ......+..++.
T Consensus 71 ~~~Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~ 144 (618)
T 1qsa_A 71 ARTLQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFS 144 (618)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHH
Confidence 334445566777788888777765443 24456666667777888888777766665554333 122233344444
Q ss_pred HHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHh-HHHHHHHHHhcCC
Q 037477 345 SISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNIT-YSQVIFGLCKAGR 423 (639)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~ 423 (639)
.+. +.|...+..++..+ ......|+...|..+...+ .++... ...++..+.+-
T Consensus 145 ~~~------------------~~g~lt~~~~~~R~-~~al~~~~~~~a~~l~~~l-----~~~~~~~a~~~~al~~~p-- 198 (618)
T 1qsa_A 145 VWR------------------ASGKQDPLAYLERI-RLAMKAGNTGLVTVLAGQM-----PADYQTIASAIISLANNP-- 198 (618)
T ss_dssp HHH------------------HTTCSCHHHHHHHH-HHHHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHHCG--
T ss_pred HHH------------------HCCCCCHHHHHHHH-HHHHHCCCHHHHHHHHHhC-----CHHHHHHHHHHHHHHhCh--
Confidence 433 33333333333333 4455667777777775543 233222 23333333222
Q ss_pred HHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HcCCChhH
Q 037477 424 FEDACNVLDEMEENGCIPDIKT---WTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGF----LSQKRVNG 496 (639)
Q Consensus 424 ~~~A~~~~~~m~~~~~~p~~~t---~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~----~~~g~~~~ 496 (639)
..+...... . .++... +...+.-+.+ .+.+.|...+....+.. ..+......+-..+ ...+...+
T Consensus 199 -~~~~~~~~~---~--~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~ 270 (618)
T 1qsa_A 199 -NTVLTFART---T--GATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDE 270 (618)
T ss_dssp -GGHHHHHHH---S--CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHH
T ss_pred -HhHHHHHhc---c--CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChH
Confidence 222222211 1 233332 2222333333 37899999998887654 23443333333333 33443556
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHH--HHHhhcCCHHHHHHHHHHhhc
Q 037477 497 AYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFV--QYISKFGTVEDASEFLKALSV 574 (639)
Q Consensus 497 A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~--~ll~~~g~~~~a~~~~~~~~~ 574 (639)
+...+...... .++.....-.+....+.|+++.|...|..|......-....|- ..+...|+.++|..+|+.+..
T Consensus 271 ~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 271 QAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 77777765443 2343334444455567799999999998886532211111222 223567999999999999875
No 260
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=65.19 E-value=50 Score=26.21 Aligned_cols=19 Identities=11% Similarity=0.099 Sum_probs=8.0
Q ss_pred HHHcCCChhHHHHHHHHHH
Q 037477 487 GFLSQKRVNGAYKLLVEMI 505 (639)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~ 505 (639)
++.+.|++++|.++.+.+.
T Consensus 87 g~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 87 GCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp HHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH
Confidence 3444444444444444433
No 261
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=64.14 E-value=53 Score=26.09 Aligned_cols=74 Identities=11% Similarity=0.039 Sum_probs=56.2
Q ss_pred CCCCCHHHHHHHHHHHHcCCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCH
Q 037477 261 GYKHNTITYNGILRVLARHESV---RDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSV 336 (639)
Q Consensus 261 ~~~p~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~ 336 (639)
+-.|+..|--....++++..+. ..++.+++++.+.+..-....+--+.-++.+.|++++|.+..+.+.+. .|+.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N 111 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 111 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCC
Confidence 4467777777788888888764 568889988887652223556667788899999999999999999874 5554
No 262
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=62.68 E-value=1.1e+02 Score=29.24 Aligned_cols=26 Identities=12% Similarity=0.285 Sum_probs=18.7
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHH
Q 037477 268 TYNGILRVLARHESVRDFWNVVEEMK 293 (639)
Q Consensus 268 ~~~~li~~~~~~g~~~~a~~~~~~m~ 293 (639)
....+|.-|...|+.++|...++++.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 34666777777788888877777764
No 263
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=62.25 E-value=1.1e+02 Score=28.95 Aligned_cols=114 Identities=9% Similarity=0.055 Sum_probs=56.2
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH----HHHhhcCCCCCCHHHHHHHH
Q 037477 268 TYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKL----FEFMMDGPYKPSVQDCSLLL 343 (639)
Q Consensus 268 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l----~~~m~~~g~~p~~~~~~~ll 343 (639)
+|-++..-|.+.+++++|.+++..-- ..+.+.|+...|-++ .+-..+.++++|.....-++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34556666788888888887764422 113334444333332 34444456667766666666
Q ss_pred HHHhhcCCCchhH---HHHHHHHHHhcC--CCCChhhHHHHHHHHHccCChhHHHHHH
Q 037477 344 RSISSINNPDLGL---VFRVANKYESLG--NSLSKSVYDGIHRALTKLGRFDEAEKMM 396 (639)
Q Consensus 344 ~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~ 396 (639)
..+......+... +.+....-.+.| ..-|+.....+...|.+.+++.+|+..|
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 6665544322211 011111111112 2234444455555666666666665555
No 264
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=62.07 E-value=26 Score=31.84 Aligned_cols=53 Identities=17% Similarity=0.196 Sum_probs=28.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 037477 419 CKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEK 472 (639)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 472 (639)
.+.|++++|++....-++.... |...-..+++.+|-.|++++|.+-++...+.
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3455555555555555544332 5555555556666666666665555555543
No 265
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.29 E-value=66 Score=31.79 Aligned_cols=98 Identities=15% Similarity=0.005 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHH----
Q 037477 445 TWTILIQGHCAANEVDRALLCFAKMMEK--NYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFK---- 518 (639)
Q Consensus 445 t~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~---- 518 (639)
+...+...|.+.|+++.|.+.+.++... +..--...+..++..+...+++..+...+........-.++....+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5677889999999999999999999884 3333456788889999999999999999998765422233322211
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 037477 519 TLIEKLLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 519 ~li~~~~~~g~~~~A~~~~~~m~~ 542 (639)
.-...+...+++.+|...|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 112224457899999998877665
No 266
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=60.17 E-value=51 Score=24.60 Aligned_cols=79 Identities=13% Similarity=0.179 Sum_probs=48.9
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 037477 387 GRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCF 466 (639)
Q Consensus 387 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~ 466 (639)
...++|.-+-+-+...+. ...+--+-+..+...|++++|..+.+.+- .||...|-.+.. .+.|..+++..-+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 446667776666665542 22111222345667788888887665544 578877776654 4777777777777
Q ss_pred HHHHHcC
Q 037477 467 AKMMEKN 473 (639)
Q Consensus 467 ~~m~~~g 473 (639)
.++...|
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 6776666
No 267
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=58.29 E-value=49 Score=24.64 Aligned_cols=79 Identities=16% Similarity=0.156 Sum_probs=47.7
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 037477 387 GRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCF 466 (639)
Q Consensus 387 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~ 466 (639)
...++|.-+-+-+...+. ...+--+-+..+...|++++|..+.+.+- .||...|-.+.. .+.|..+++..-+
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 345666666666665542 11111222344567788888876654433 577777766644 4777777777777
Q ss_pred HHHHHcC
Q 037477 467 AKMMEKN 473 (639)
Q Consensus 467 ~~m~~~g 473 (639)
.++...|
T Consensus 92 ~~la~sg 98 (115)
T 2uwj_G 92 AGLGGSS 98 (115)
T ss_dssp HHHHTCS
T ss_pred HHHHhCC
Confidence 6776666
No 268
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=54.07 E-value=1.1e+02 Score=26.40 Aligned_cols=77 Identities=13% Similarity=0.155 Sum_probs=55.8
Q ss_pred CCCCCCHHHHHHHHHHHHc--CCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCH
Q 037477 260 SGYKHNTITYNGILRVLAR--HESVRDFWNVVEEMKKEGYEMD-IDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSV 336 (639)
Q Consensus 260 ~~~~p~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~ 336 (639)
..++-|..-...-|..--. ++...++.++|..|...|+... +..|......+-..|++.+|.++|+.-.+.+-+|-.
T Consensus 71 ~rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 71 ETYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp GGGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred ccccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 3445565444433332222 4557799999999999887654 556888888999999999999999999888766643
No 269
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=51.96 E-value=71 Score=23.80 Aligned_cols=46 Identities=22% Similarity=0.192 Sum_probs=18.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHH-hhcCCHHHHHHHHHHhh
Q 037477 524 LLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYI-SKFGTVEDASEFLKALS 573 (639)
Q Consensus 524 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll-~~~g~~~~a~~~~~~~~ 573 (639)
+.+.|++++|..+.+.+ ..||...+..+. .+.|..+.+...+..+.
T Consensus 49 LmNrG~Yq~Al~l~~~~----c~pdlepw~ALce~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGN----PWPALEPWFALCEWHLGLGAALDRRLAGLG 95 (115)
T ss_dssp HHHTTCHHHHHGGGTTC----CCGGGHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHcchhHHHHHHhcCCC----CCchHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 33444444444433322 234444444444 23444444444443333
No 270
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=51.27 E-value=74 Score=23.76 Aligned_cols=46 Identities=17% Similarity=0.199 Sum_probs=19.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHH-hhcCCHHHHHHHHHHhh
Q 037477 524 LLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYI-SKFGTVEDASEFLKALS 573 (639)
Q Consensus 524 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll-~~~g~~~~a~~~~~~~~ 573 (639)
+.+.|++++|..+.+.+ ..||...+..+. .+.|..+.+...+..+.
T Consensus 50 LmNrG~Yq~Al~l~~~~----c~pdlepw~ALce~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 50 LMNRGDYASALQQGNKL----AYPDLEPWLALCEYRLGLGSALESRLNRLA 96 (116)
T ss_dssp HHHTTCHHHHHHHHTTS----CCGGGHHHHHHHHHHHTCHHHHHHHHHHHT
T ss_pred HHcchhHHHHHHhcCCC----CCchHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 33444444444443332 234444444444 23444444444443333
No 271
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=50.27 E-value=1.6e+02 Score=27.36 Aligned_cols=60 Identities=12% Similarity=0.220 Sum_probs=28.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC--hhHHHHHHHHHHHh
Q 037477 447 TILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKR--VNGAYKLLVEMIEK 507 (639)
Q Consensus 447 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~ 507 (639)
..++.-|...|+.++|.+.++++....+. ...+..++..++-+.++ .+....++..+.+.
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~ 231 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKS 231 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHC
Confidence 44555566666666666666655422111 12333344444443322 33445555555544
No 272
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=49.82 E-value=70 Score=25.22 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=12.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 037477 412 SQVIFGLCKAGRFEDACNVLDEME 435 (639)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~ 435 (639)
+.++.-|...|+.++|...++++.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 344444555555555555555543
No 273
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=49.13 E-value=1e+02 Score=24.79 Aligned_cols=66 Identities=11% Similarity=0.074 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 037477 441 PDIKTWTILIQGHCAANE---VDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIE 506 (639)
Q Consensus 441 p~~~t~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (639)
|+..+--....++.+..+ ..++..+++.+...+..-.....--|.-++.+.|++++|.++.+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444444444444444443 234555555555543222223333344456666666666666666654
No 274
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=48.51 E-value=1.7e+02 Score=27.22 Aligned_cols=115 Identities=17% Similarity=0.101 Sum_probs=60.5
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH----HHHHhhcCCCCCCHHHHHHHH
Q 037477 268 TYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVK----LFEFMMDGPYKPSVQDCSLLL 343 (639)
Q Consensus 268 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~----l~~~m~~~g~~p~~~~~~~ll 343 (639)
.|-++..-|.+.+++++|.+++..--. .+.+.|+...|-+ +.+-..+.+++++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 345566667777888888777654321 1334455444333 344445566777777777776
Q ss_pred HHHhhcCCCchhH---HHHHHHHHHhcC--CCCChhhHHHHHHHHHccCChhHHHHHHH
Q 037477 344 RSISSINNPDLGL---VFRVANKYESLG--NSLSKSVYDGIHRALTKLGRFDEAEKMMK 397 (639)
Q Consensus 344 ~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 397 (639)
..+......+... +.+....-.+.| ..-++.....+...|.+.|++.+|+..|-
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 6665543322211 111111111222 12345556666666777777776666553
No 275
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=44.01 E-value=72 Score=28.71 Aligned_cols=19 Identities=16% Similarity=0.139 Sum_probs=9.7
Q ss_pred HHHHHHHcCCChhHHHHHH
Q 037477 271 GILRVLARHESVRDFWNVV 289 (639)
Q Consensus 271 ~li~~~~~~g~~~~a~~~~ 289 (639)
+.+...++.|+++.+..++
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll 25 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLL 25 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHH
Confidence 3444556666655444433
No 276
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=40.40 E-value=2.1e+02 Score=28.23 Aligned_cols=38 Identities=8% Similarity=0.028 Sum_probs=25.1
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcC
Q 037477 313 KFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSIN 350 (639)
Q Consensus 313 ~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~ 350 (639)
+.++.+.|+.++..|.+.|..|....-..+..+.-..|
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig 304 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVG 304 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 45788889999999988887766554444444443333
No 277
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=39.81 E-value=69 Score=26.16 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=11.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 037477 412 SQVIFGLCKAGRFEDACNVLDEME 435 (639)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~ 435 (639)
+.++.-|...|+.++|...++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 344444555555555555555543
No 278
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=39.79 E-value=1.8e+02 Score=24.91 Aligned_cols=32 Identities=6% Similarity=0.022 Sum_probs=17.2
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 037477 314 FRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSI 346 (639)
Q Consensus 314 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~ 346 (639)
-.+.+.|+-.+.+|.+.| .|.-..=..++-+.
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~As 58 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGY 58 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Confidence 456666666666666666 44443333333333
No 279
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=39.71 E-value=72 Score=21.07 Aligned_cols=47 Identities=17% Similarity=0.128 Sum_probs=30.7
Q ss_pred HHHHHHhhccCcCCHHHHHHHHHHhccChHHHHHHHHHHhccCCCCCC
Q 037477 218 KIGKKLEDMKIELSDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKHN 265 (639)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p~ 265 (639)
+....+..|-...+...+..+|...+++.+.|+..+-.|. ..+..|+
T Consensus 11 e~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~-~~~~~~~ 57 (59)
T 1wgl_A 11 EDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMG-EEPSGPS 57 (59)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSS-CCCCSCC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCc-CCCCCCC
Confidence 4444555555566777777777777778888887777774 3444443
No 280
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=39.44 E-value=87 Score=25.94 Aligned_cols=51 Identities=8% Similarity=0.094 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 037477 497 AYKLLVEMIEKVRLRPW-QATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPF 548 (639)
Q Consensus 497 A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 548 (639)
+..+|..|..+ ++.-. ...|......+...|++.+|.++|..-++.+-.|.
T Consensus 79 p~~if~~L~~~-~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQ-GIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHT-TSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHC-CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 55556666554 44333 34455555555666666666666666666655553
No 281
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=38.79 E-value=1.9e+02 Score=24.86 Aligned_cols=57 Identities=19% Similarity=0.211 Sum_probs=38.3
Q ss_pred CCChhHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 037477 491 QKRVNGAYKLLVEMIEKVRLRPW-QATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPF 548 (639)
Q Consensus 491 ~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 548 (639)
++...++..+|..|..+ |+.-. ...|......+...|++.+|.++|+.-.+.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~-~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNK-GIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHH-TSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 34456777777777766 55443 44566666667777777777777777777766664
No 282
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=36.94 E-value=47 Score=29.05 Aligned_cols=19 Identities=0% Similarity=-0.204 Sum_probs=9.6
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q 037477 307 ISRQFQKFRMMEDAVKLFE 325 (639)
Q Consensus 307 li~~~~~~g~~~~a~~l~~ 325 (639)
.+...+..|+.+-+..+++
T Consensus 45 ~L~~A~~~~~~~~v~~Ll~ 63 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYYIS 63 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHH
Confidence 3444455666655444443
No 283
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=36.92 E-value=88 Score=26.35 Aligned_cols=56 Identities=21% Similarity=0.232 Sum_probs=28.1
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCH
Q 037477 276 LARHESVRDFWNVVEEMKKEGYEMDID--TYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSV 336 (639)
Q Consensus 276 ~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~ 336 (639)
.++.|+++....++.. ++. ... .-.+.+...+..|+.+.-.++.+.+.+.|..++.
T Consensus 13 Aa~~g~~~~~~~l~~~----~~~-~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~ 70 (186)
T 3t8k_A 13 AAMLGTYEDFLELFEK----GYE-DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKS 70 (186)
T ss_dssp HHHHSCHHHHHHHHHH----SSS-CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSC
T ss_pred HHHcCCHHHHHHHHhc----Ccc-cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCC
Confidence 3456777665555432 211 111 1123444445566666555666666666655543
No 284
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=36.64 E-value=1.7e+02 Score=23.78 Aligned_cols=73 Identities=14% Similarity=0.160 Sum_probs=50.8
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCH
Q 037477 261 GYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMD-IDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSV 336 (639)
Q Consensus 261 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~ 336 (639)
..+-|..-...-|. |+.. .+++.++|..|...|+... +..|......+-..|++.+|.++|+.-.+.+-+|-.
T Consensus 63 ~YknD~RyLklWl~-ya~~--~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 63 KYHNDPRFISYCLK-FAEY--NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp GGTTCHHHHHHHHH-HHTT--BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred cccCCHHHHHHHHH-HHHh--cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 34445544444443 2222 3448888999988876554 556788888888889999999999988888777754
No 285
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=34.39 E-value=3.3e+02 Score=26.35 Aligned_cols=131 Identities=7% Similarity=0.002 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcC-CCCCC---HHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhH--
Q 037477 303 TYIKISRQFQKFRMMEDAVKLFEFMMDG-PYKPS---VQDCSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVY-- 376 (639)
Q Consensus 303 ~~~~li~~~~~~g~~~~a~~l~~~m~~~-g~~p~---~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 376 (639)
....+...|.+.|+.++..+++.....- +.-|- ......++..+...... .+...++..+..+.... ...+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~-~~~~~~~~~~~~~~a~~-~~r~flr 98 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAG-TGIEVQLCKDCIEWAKQ-EKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCC-HHHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 4456777788888888888777766431 11111 12233444444443322 12222222222111100 01112
Q ss_pred ----HHHHHHHHccCChhHHHHHHHHHHHCCCCCC-----HHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037477 377 ----DGIHRALTKLGRFDEAEKMMKAMKNAGFEPD-----NITYSQVIFGLCKAGRFEDACNVLDEME 435 (639)
Q Consensus 377 ----~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 435 (639)
..++..|...|++.+|.+++..+.+.=-..| ...|-.-+..|...+++.++...+....
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1355566666666666666665554211111 1223334455556666666666665543
No 286
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=33.37 E-value=88 Score=25.83 Aligned_cols=70 Identities=16% Similarity=0.165 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCH
Q 037477 247 VKALGFFRWVGEHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKE--GYEMDIDTYIKISRQFQKFRMM 317 (639)
Q Consensus 247 ~~A~~~f~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~ 317 (639)
+.+++-+....++.|++++. --..++..+...+..-.|.++++.+.+. +...+..|.-.-+..+...|-.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 34555555555667777654 3456677777777888999999999887 6666777766666666666643
No 287
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=32.73 E-value=2e+02 Score=23.39 Aligned_cols=69 Identities=16% Similarity=0.153 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHhccChHHHHHHHHHHhccCCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCH
Q 037477 231 SDNFVLTVLKELRIYPVKALGFFRWVGEHSGYKH-NTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDI 301 (639)
Q Consensus 231 ~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 301 (639)
+...+.-.+.-.. ...++.++|..|. ..|+-- -...|......+-..|++.+|.++|+.-.+.+-.|-.
T Consensus 67 D~RyLklWl~ya~-~~~dp~~if~~L~-~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 67 DPRFISYCLKFAE-YNSDLHQFFEFLY-NHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp CHHHHHHHHHHHT-TBSCHHHHHHHHH-TTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHHH-hcCCHHHHHHHHH-HCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 4444444444332 2334888888885 444443 4677888888899999999999999999998777743
No 288
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=32.50 E-value=2.4e+02 Score=24.31 Aligned_cols=33 Identities=12% Similarity=0.061 Sum_probs=16.8
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 037477 314 FRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSI 346 (639)
Q Consensus 314 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~ 346 (639)
-.+.+.|+-.+.+|.+.|-.|.-..=..++-+.
T Consensus 48 GSDpDAALywLaRMl~~GEDp~~IaRRLvi~As 80 (213)
T 3ctd_A 48 GSDPDATLYWLANMVEAGEDPNFIFRRLLISAC 80 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 345566666666666655555444433333333
No 289
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=32.24 E-value=2e+02 Score=23.15 Aligned_cols=72 Identities=8% Similarity=-0.045 Sum_probs=44.8
Q ss_pred CCCHHHHHHHHHHHHcCCC---hhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh
Q 037477 475 DADADLLDVLINGFLSQKR---VNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFP 549 (639)
Q Consensus 475 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 549 (639)
.|+..+--.+..++.+... ..+++.+++++.+. +..-.....-.+.-++.+.|++++|.+..+.+.+ +.|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 4566665556666666654 44677777777765 2111223333445577888888888888888877 45654
No 290
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=32.07 E-value=4.5e+02 Score=27.26 Aligned_cols=237 Identities=8% Similarity=-0.037 Sum_probs=123.0
Q ss_pred HHHHHHHhhhCCCCCHHHHH----HHHHhcCCChHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHH
Q 037477 80 DELENKLEELSPKLTHESVV----YVLRKLDNDPEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRM 155 (639)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~~~----~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m 155 (639)
.++...+...+..+-.+.+. ..|.+ .+++..-+.++.. .+.+...-+....+....|+..+|....+++
T Consensus 56 ~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~-~~~w~~~l~~~~~------~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~l 128 (618)
T 1qsa_A 56 VTVTNFVRANPTLPPARTLQSRFVNELAR-REDWRGLLAFSPE------KPGTTEAQCNYYYAKWNTGQSEEAWQGAKEL 128 (618)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHH-TTCHHHHHHHCCS------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCChhHHHHHHHHHHHHHh-CCCHHHHHHhccC------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 35555555555444333322 22322 4666665554432 1245666667778888889888888888888
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhhccchh--------------HHHHHHHHHhcCCchHHHHH
Q 037477 156 KEDHCYIEEETYLSILGVLKKAKKASDLAALNQFHDGMVKEIAMDN--------------VAKTLVDVVLGSDWDDKIGK 221 (639)
Q Consensus 156 ~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~l~~~~~~~~~~~~~~~ 221 (639)
-..|- ..+..+..++..+.+.|.........++ ..++..+.... ....++.++.+.... ..
T Consensus 129 W~~~~-~~p~~c~~l~~~~~~~g~lt~~~~~~R~-~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~ 203 (618)
T 1qsa_A 129 WLTGK-SQPNACDKLFSVWRASGKQDPLAYLERI-RLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LT 203 (618)
T ss_dssp HSCSS-CCCTHHHHHHHHHHHTTCSCHHHHHHHH-HHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HH
T ss_pred HhCCC-CCcHHHHHHHHHHHHCCCCCHHHHHHHH-HHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HH
Confidence 77773 3456677888888877766543332222 22222111100 122233333221111 11
Q ss_pred HHhhcc-CcCCHHHHHHHH-HHhccChHHHHHHHHHHhccCCCCCCH--HHHHHHHHHHHcCCChhHHHHHHHHHHHCCC
Q 037477 222 KLEDMK-IELSDNFVLTVL-KELRIYPVKALGFFRWVGEHSGYKHNT--ITYNGILRVLARHESVRDFWNVVEEMKKEGY 297 (639)
Q Consensus 222 ~~~~~~-~~~~~~~~~~~l-~~~~~~~~~A~~~f~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 297 (639)
.....+ .......+...+ ...+.+++.|...|....+...+.+.. ..+..+...+...+...++...+.......
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~- 282 (618)
T 1qsa_A 204 FARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS- 282 (618)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC-
T ss_pred HHhccCCChhhHHHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC-
Confidence 111111 111112222223 334678899999998886444333222 122233333344453556777777655543
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcC
Q 037477 298 EMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDG 330 (639)
Q Consensus 298 ~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 330 (639)
.+.....-.+....+.|+++.|...|..|...
T Consensus 283 -~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~ 314 (618)
T 1qsa_A 283 -QSTSLIERRVRMALGTGDRRGLNTWLARLPME 314 (618)
T ss_dssp -CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT
T ss_pred -CChHHHHHHHHHHHHCCCHHHHHHHHHHcccc
Confidence 34333333444455779999999999988653
No 291
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=31.31 E-value=1.9e+02 Score=23.05 Aligned_cols=58 Identities=10% Similarity=0.001 Sum_probs=25.2
Q ss_pred HHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 037477 399 MKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAAN 457 (639)
Q Consensus 399 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g 457 (639)
+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 44444444332 22333333344444445555555555444444444444444444443
No 292
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=30.07 E-value=1.4e+02 Score=22.96 Aligned_cols=33 Identities=18% Similarity=0.138 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 037477 495 NGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARR 529 (639)
Q Consensus 495 ~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 529 (639)
+.++++.....+..|+.|. ++...++...+.|-
T Consensus 36 Elawk~~k~~l~~~g~~~~--s~rd~~r~a~~~gl 68 (119)
T 1wty_A 36 ELAWKTLKTFLELQGLEAR--SPRAAIRGAFQVGL 68 (119)
T ss_dssp HHHHHHHHHHHHHHTCCCS--SHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCCCC--CHHHHHHHHHHcCC
Confidence 3444444444333344332 33444444444443
No 293
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=29.72 E-value=29 Score=31.20 Aligned_cols=53 Identities=17% Similarity=0.089 Sum_probs=29.7
Q ss_pred HHHccCChhHHHHHHHHHHHCCCCCCHH-------hHHHHHHHHH--hcCCHHHHHHHHHHH
Q 037477 382 ALTKLGRFDEAEKMMKAMKNAGFEPDNI-------TYSQVIFGLC--KAGRFEDACNVLDEM 434 (639)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~-------~~~~li~~~~--~~g~~~~A~~~~~~m 434 (639)
..++.|+.+....+++.+.+.|..++.. -++.|..+.. +.|+.+-+..+++.-
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 3455677777777777666665554422 2344444432 456666666655554
No 294
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=29.40 E-value=6e+02 Score=27.87 Aligned_cols=157 Identities=13% Similarity=0.076 Sum_probs=85.1
Q ss_pred HHHHHHHHccCC---hhHHHHHHHHHHHCC----CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 037477 377 DGIHRALTKLGR---FDEAEKMMKAMKNAG----FEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTIL 449 (639)
Q Consensus 377 ~~li~~~~~~g~---~~~A~~~~~~m~~~g----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 449 (639)
..++...|..|. .+.|.+.|+.....+ ++||.. ..+...-.+.|.-++-..+++..... .+..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHH
Confidence 346667777776 456777887766532 445543 23333344667766666677777664 345556678
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHcC-CChhHHHHHHHH----HHHhCCCCCCHHHHHHHHHH
Q 037477 450 IQGHCAANEVDRALLCFAKMMEKN-YDADADLLDVLINGFLSQ-KRVNGAYKLLVE----MIEKVRLRPWQATFKTLIEK 523 (639)
Q Consensus 450 i~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~----m~~~~~~~p~~~~~~~li~~ 523 (639)
+.+++...+.+...++++..+... +++ ...... +.+.... ...+.|++++.+ +.++++ .....+..+|..
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~~~ir~-qd~~~~-~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~--~~~~~~~~~i~~ 840 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNPDLIRK-QDATST-INSIASNVIGQPLAWDFVQSNWKKLFQDYG--GGSFSFSNLIQG 840 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCTTTSCG-GGHHHH-HHHHHHSTTHHHHHHHHHHHHCTTTTTSSS--SCCCCHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHhCCCCCch-hhHHHH-HHHHhcChHHHHHHHHHHHHHHHHHHHHhC--CCchHHHHHHHH
Confidence 888888888888778777766543 333 222222 3333322 223444444433 111111 122345667766
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 037477 524 LLGARRLEEAMNLLRLMKK 542 (639)
Q Consensus 524 ~~~~g~~~~A~~~~~~m~~ 542 (639)
....-..++-.+-++...+
T Consensus 841 ~~~~~~t~~~~~~~~~f~~ 859 (909)
T 4fke_A 841 VTRRFSSEFELQQLEQFKK 859 (909)
T ss_dssp HHTTCCSHHHHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHHh
Confidence 6655444444444555444
No 295
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=29.27 E-value=3.2e+02 Score=26.06 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=16.0
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHH
Q 037477 270 NGILRVLARHESVRDFWNVVEEMK 293 (639)
Q Consensus 270 ~~li~~~~~~g~~~~a~~~~~~m~ 293 (639)
..+|.-|...|++++|.+.++++.
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 456666666677777777776664
No 296
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=28.96 E-value=4e+02 Score=25.72 Aligned_cols=59 Identities=7% Similarity=0.110 Sum_probs=44.7
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 037477 271 GILRVLARHESVRDFWNVVEEMKKEGYEMD-----IDTYIKISRQFQKFRMMEDAVKLFEFMMD 329 (639)
Q Consensus 271 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 329 (639)
.++..|...|++.+|.+++..+.+.=-..| ...|-.-+..|...+++.++...+.....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSART 167 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 578889999999999999988876311111 34466677888899999999988887654
No 297
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=28.33 E-value=3.9e+02 Score=25.38 Aligned_cols=65 Identities=15% Similarity=0.279 Sum_probs=31.6
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCC
Q 037477 481 LDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARR--LEEAMNLLRLMKKQNYPP 547 (639)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p 547 (639)
...++.-|...|+.++|.+.++++... ... ....+..+..++-+.++ .+...+++..+...|+-+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p-~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls 286 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVP-HFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 286 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCT-TCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCC-cch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC
Confidence 355566666666666666666665311 000 12333444444444332 234555555555554433
No 298
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=28.14 E-value=1.8e+02 Score=21.47 Aligned_cols=26 Identities=4% Similarity=0.149 Sum_probs=10.1
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHH
Q 037477 393 EKMMKAMKNAGFEPDNITYSQVIFGL 418 (639)
Q Consensus 393 ~~~~~~m~~~g~~~~~~~~~~li~~~ 418 (639)
.++.++...-|+.|+..+..-++..|
T Consensus 29 e~L~eEfdefGi~~~d~VldKc~ELC 54 (101)
T 2keb_A 29 QQLAEELQIFGLDCEEALIEKLVELC 54 (101)
T ss_dssp HHHHHHHHHHTCBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 33333333344444433333333333
No 299
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=28.01 E-value=1.6e+02 Score=26.06 Aligned_cols=23 Identities=30% Similarity=0.169 Sum_probs=15.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 037477 414 VIFGLCKAGRFEDACNVLDEMEE 436 (639)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~ 436 (639)
-++.+....++++|.+++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 45666667777777777666543
No 300
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=27.97 E-value=3.3e+02 Score=24.33 Aligned_cols=17 Identities=18% Similarity=0.155 Sum_probs=7.9
Q ss_pred CHHHHHHHHHHHHcCCC
Q 037477 477 DADLLDVLINGFLSQKR 493 (639)
Q Consensus 477 ~~~~~~~li~~~~~~g~ 493 (639)
+..+-...+.++.+.|+
T Consensus 205 ~~~vR~~A~~aL~~~~~ 221 (280)
T 1oyz_A 205 NEEVRIEAIIGLSYRKD 221 (280)
T ss_dssp CHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 34444444445555554
No 301
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=27.87 E-value=2.6e+02 Score=23.10 Aligned_cols=74 Identities=12% Similarity=0.157 Sum_probs=53.7
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCH
Q 037477 260 SGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMD-IDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSV 336 (639)
Q Consensus 260 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~ 336 (639)
..+.-|..-...-|..--.+ +...++|..|...|+... +..|......+-..|++.+|.++|..-.+.+-+|-.
T Consensus 57 ~~YknD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 57 KRYYSDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp GGGTTCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred hhhccCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 34455665555545332222 457889999999987655 556888888899999999999999999888777754
No 302
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=27.67 E-value=2.1e+02 Score=24.39 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=9.3
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 037477 416 FGLCKAGRFEDACNVLDE 433 (639)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~ 433 (639)
..|.+.|.+++|.++|++
T Consensus 125 ~VCiekg~Fk~A~eiLkr 142 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFER 142 (211)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHccchHHHHHHHHH
Confidence 345555555555555555
No 303
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=27.47 E-value=48 Score=29.67 Aligned_cols=26 Identities=4% Similarity=-0.010 Sum_probs=14.9
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCC
Q 037477 275 VLARHESVRDFWNVVEEMKKEGYEMD 300 (639)
Q Consensus 275 ~~~~~g~~~~a~~~~~~m~~~g~~p~ 300 (639)
..++.|+.+....+++.+.+.|..++
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 34455666666666666655554444
No 304
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=27.45 E-value=6.5e+02 Score=27.67 Aligned_cols=259 Identities=8% Similarity=0.021 Sum_probs=134.5
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhhcCCC--CCC---H-HHHHHHH-HH
Q 037477 275 VLARHESVRDFWNVVEEMKKEGYEMDID--TYIKISRQFQKFRMMEDAVKLFEFMMDGPY--KPS---V-QDCSLLL-RS 345 (639)
Q Consensus 275 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~a~~l~~~m~~~g~--~p~---~-~~~~~ll-~~ 345 (639)
+....|+.++++.+++.....+-..+.. .=..+.-+....|..+++..++.......- .-+ . ....+.+ -+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4567788888877776655421112322 223344455666766677777766554210 011 1 1111111 11
Q ss_pred HhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHH--HHHHhcCC
Q 037477 346 ISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVI--FGLCKAGR 423 (639)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li--~~~~~~g~ 423 (639)
++..|..+.+....+...+...........--++...+.-.|+-+....++..+.+.. +......+. -++...|+
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTC
T ss_pred HHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCC
Confidence 2223333332233333333221100000111123334556677777778887776542 222333333 34446788
Q ss_pred HHHHHHHHHHHHHCCCCCCHHH-HH---HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 037477 424 FEDACNVLDEMEENGCIPDIKT-WT---ILIQGHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYK 499 (639)
Q Consensus 424 ~~~A~~~~~~m~~~~~~p~~~t-~~---~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 499 (639)
.+.+..+.+.+... .+... |. ++.-+|+..|+.....+++..+.+.. ..+..-...+--++...|+.+.+.+
T Consensus 540 ~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 540 QELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp GGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred hHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 88888888888763 23332 32 23446778889887777888888652 2233333333335555777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 037477 500 LLVEMIEKVRLRPWQATFKTLIEKLLGARRL-EEAMNLLRLMKK 542 (639)
Q Consensus 500 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~ 542 (639)
+++.+.+. ..|.+..-..+.-+....|.. .++++++..+..
T Consensus 616 lv~~L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 616 IVQLLSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HTTTGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 77766543 245544444444455555543 678888888863
No 305
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=27.22 E-value=2.9e+02 Score=23.55 Aligned_cols=38 Identities=11% Similarity=0.079 Sum_probs=24.4
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcC
Q 037477 313 KFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSISSIN 350 (639)
Q Consensus 313 ~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~ 350 (639)
+-.+.+.|+-.+.+|.+.|-.|.-..=..++-+.-..|
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 45678888888888888776666555555444444333
No 306
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=26.58 E-value=2.3e+02 Score=22.14 Aligned_cols=65 Identities=20% Similarity=0.358 Sum_probs=42.5
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCC
Q 037477 376 YDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGR--FEDACNVLDEMEENGCIP 441 (639)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p 441 (639)
...++.-|...|+.++|.+.++++..... ....+..++..++-+.++ .+.+..++..+.+.|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 45688889999999999999999862111 112334445555555432 456778888887776553
No 307
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=26.57 E-value=2.2e+02 Score=22.90 Aligned_cols=11 Identities=9% Similarity=-0.106 Sum_probs=4.3
Q ss_pred HHHHHHHHHHc
Q 037477 462 ALLCFAKMMEK 472 (639)
Q Consensus 462 a~~~~~~m~~~ 472 (639)
|.++++.+.+.
T Consensus 45 a~ei~~~l~~~ 55 (150)
T 2xig_A 45 PEEITHSIRQK 55 (150)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 33444443333
No 308
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=26.48 E-value=4.7e+02 Score=25.71 Aligned_cols=37 Identities=16% Similarity=0.053 Sum_probs=20.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 037477 456 ANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQK 492 (639)
Q Consensus 456 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 492 (639)
.++.+.|+..+.+|++.|..|....-..++.+.-.-|
T Consensus 268 gsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig 304 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVG 304 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 4566666666666666665554444444444444444
No 309
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=26.40 E-value=2.7e+02 Score=24.31 Aligned_cols=52 Identities=8% Similarity=0.095 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 037477 495 NGAYKLLVEMIEKVRLRPW-QATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPP 547 (639)
Q Consensus 495 ~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 547 (639)
+++..+|..|..+ ||.-. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~-~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHH-HIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHT-TCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHC-CcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4666677777665 55443 4456666666667777777777777777666666
No 310
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=26.03 E-value=77 Score=27.01 Aligned_cols=37 Identities=16% Similarity=0.124 Sum_probs=23.0
Q ss_pred HHHHHHHhcCCHHHHHHHHhh-CCccccCChhHHHhhh
Q 037477 585 QVFESFFNEGRHYEAKDLLYK-CPHHIRQDSKISLLFG 621 (639)
Q Consensus 585 ~l~~~~~~~g~~~~A~~~~~~-m~~~~~~~~~~~~l~~ 621 (639)
..+-.|.+.|.+++|.+++++ +.+.+...+....|+.
T Consensus 122 qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~ 159 (211)
T 3bqo_A 122 QAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLM 159 (211)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 456678889999999999988 5655555555554443
No 311
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=25.94 E-value=3e+02 Score=23.21 Aligned_cols=62 Identities=16% Similarity=0.064 Sum_probs=29.1
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 037477 405 EPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMME 471 (639)
Q Consensus 405 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 471 (639)
.++...-...+.++.+.|..+ +...+..+.+ .++..+-...+.++.+.+. ..+...+..+.+
T Consensus 123 d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 123 DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 345444455555555555432 3333333332 2455555555555555555 234444444443
No 312
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=25.66 E-value=2.1e+02 Score=22.57 Aligned_cols=58 Identities=21% Similarity=0.155 Sum_probs=26.5
Q ss_pred HHHCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 037477 399 MKNAGFEPDNITYSQVIFGLCKAG-RFEDACNVLDEMEENGCIPDIKTWTILIQGHCAAN 457 (639)
Q Consensus 399 m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g 457 (639)
+.+.|++++.. -..++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34455444432 223344444443 44555666666655554444444444444444444
No 313
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=25.50 E-value=1.7e+02 Score=20.33 Aligned_cols=31 Identities=13% Similarity=0.055 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 037477 426 DACNVLDEMEENGCIPDIKTWTILIQGHCAA 456 (639)
Q Consensus 426 ~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 456 (639)
.+.++++.+.+.+...+..|....+..+...
T Consensus 35 s~~el~~~l~~~~~~is~~TVyR~L~~L~~~ 65 (83)
T 2fu4_A 35 SAEDLYKRLIDMGEEIGLATVYRVLNQFDDA 65 (83)
T ss_dssp CHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 3444444444443333444444444444333
No 314
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=24.54 E-value=4.2e+02 Score=24.40 Aligned_cols=280 Identities=12% Similarity=0.016 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 037477 270 NGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYI---KISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQDCSLLLRSI 346 (639)
Q Consensus 270 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~---~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~ 346 (639)
++.+...++.|+++-+..+++. |..++...-. +-+...+..|+.+-+.-+++.-..-................
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~----Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~ 101 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEG----GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAI 101 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH----TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHC----CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHh
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHH------------HH
Q 037477 347 SSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYS------------QV 414 (639)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~------------~l 414 (639)
. ...............-...+..-++.+..+..... .++.+.+.+.|..++..... +.
T Consensus 102 ~-----~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~-----~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~ 171 (337)
T 4g8k_A 102 A-----GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGK-----VKALKFLYKRGANVNLRRKTKEDQERLRKGGATA 171 (337)
T ss_dssp H-----TCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTC-----HHHHHHHHHTTCCTTCCCCCC-----CTTCSCCH
T ss_pred c-----ccchhhHHhhhccchhhhhccCCCCHHHHHHHcCc-----HHHHHHHHHcCCCcchhhccccccccccCCCCcH
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHcCC
Q 037477 415 IFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAANEVDRALLCFAKMMEKNYDADADLLD--VLINGFLSQK 492 (639)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g 492 (639)
+...+..|+.+-+..++++....--..|..-.+.+..+........ ...+.+.+++.|..++..... ..+...+..|
T Consensus 172 L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~-~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~ 250 (337)
T 4g8k_A 172 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSD-VEAITHLLLDHGADVNVRGERGKTPLILAVEKK 250 (337)
T ss_dssp HHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTT-HHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCccc-HHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhh
Q ss_pred ChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHhhcCCHHHHHHHHH
Q 037477 493 RVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLEEAMNLLRLMKKQNYPPFPEPFVQYISKFGTVEDASEFLK 570 (639)
Q Consensus 493 ~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~g~~~~a~~~~~ 570 (639)
..+....+++.-... --..|..-++.|..+..... .++.+.+.+.|..++..+....-+..|+.+-+.-+++
T Consensus 251 ~~~~v~~Ll~~~~~~-vn~~d~~G~TpL~~A~~~g~-----~~iv~~Ll~~GAd~n~~~~L~~A~~~~~~~iv~~Ll~ 322 (337)
T 4g8k_A 251 HLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKL-----KKIAELLCKRGASTDCGDLVMTARRNYDHSLVKVLLS 322 (337)
T ss_dssp CHHHHHHHHTSTTCC-TTCBCTTSCBHHHHHHHTTC-----HHHHHHHHTTSCSSTTCCHHHHHHHTTCHHHHHHHHH
T ss_pred hhHHHHHHHHhcCCc-ccCcCCCCCCHHHHHHHcCC-----HHHHHHHHHCCCCCCCCCHHHHHHHcCCHHHHHHHHH
No 315
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=24.45 E-value=3.7e+02 Score=23.72 Aligned_cols=90 Identities=10% Similarity=0.010 Sum_probs=54.1
Q ss_pred HHHHHHccCChhHHHHHHHHHHHC--CCCC----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037477 379 IHRALTKLGRFDEAEKMMKAMKNA--GFEP----DNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQG 452 (639)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m~~~--g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~ 452 (639)
-++.+....++++|.+++++..+. +.++ +.......+..-.....-.-+..+.+++.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 567888899999999999877642 2221 111122223333333333334444444533 3566677777888
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 037477 453 HCAANEVDRALLCFAKMME 471 (639)
Q Consensus 453 ~~~~g~~~~a~~~~~~m~~ 471 (639)
+.+.|+.++|.++|=+...
T Consensus 101 L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHH
Confidence 8899999999888765543
No 316
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=24.30 E-value=3.5e+02 Score=23.46 Aligned_cols=48 Identities=15% Similarity=0.205 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHHCCCCCCHH-------hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037477 389 FDEAEKMMKAMKNAGFEPDNI-------TYSQVIFGLCKAGRFEDACNVLDEMEE 436 (639)
Q Consensus 389 ~~~A~~~~~~m~~~g~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~ 436 (639)
++.|+.+|+.+.+.-.-++.. .--..+-.|.+.|.+++|.++|++...
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 455666666666543111111 011334456667777777777776654
No 317
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=23.38 E-value=3e+02 Score=22.31 Aligned_cols=25 Identities=8% Similarity=0.169 Sum_probs=15.3
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHH
Q 037477 269 YNGILRVLARHESVRDFWNVVEEMK 293 (639)
Q Consensus 269 ~~~li~~~~~~g~~~~a~~~~~~m~ 293 (639)
.+.+|.-|...|+.++|.+.++++.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 4555666666666666666666654
No 318
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=23.05 E-value=2e+02 Score=23.05 Aligned_cols=57 Identities=11% Similarity=0.067 Sum_probs=25.2
Q ss_pred HHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 037477 399 MKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAAN 457 (639)
Q Consensus 399 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g 457 (639)
+.+.|++++.. -..++..+...+ .-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 10 L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 10 LRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 34445444332 222333333334 4455555555555544444444444444444444
No 319
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=23.02 E-value=3.2e+02 Score=22.47 Aligned_cols=52 Identities=15% Similarity=0.187 Sum_probs=34.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH-H-----HHHcCCHHHHHHHHHHHHH
Q 037477 420 KAGRFEDACNVLDEMEENGCIP--DIKTWTILIQ-G-----HCAANEVDRALLCFAKMME 471 (639)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~~~~p--~~~t~~~li~-~-----~~~~g~~~~a~~~~~~m~~ 471 (639)
..|++-+|-++|+..=.....+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3488888888888876654444 4456666666 2 2356788888887777765
No 320
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=22.92 E-value=1.6e+02 Score=19.33 Aligned_cols=36 Identities=14% Similarity=0.099 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCC
Q 037477 93 LTHESVVYVLRKLDNDPEKASAFFNWVCDKKQFRPS 128 (639)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~ 128 (639)
+........|....-|++.|...|..+.....++|+
T Consensus 20 mn~~~s~~cL~~~~Wd~~~A~~~F~~l~~~~~IP~e 55 (59)
T 1oai_A 20 MNLEWSQKCLQDNNWDYTRSAQAFTHLKAKGEIPEV 55 (59)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCSCGG
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCHH
Confidence 344444445555445677777777766553444443
No 321
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=22.88 E-value=6.7e+02 Score=26.22 Aligned_cols=46 Identities=13% Similarity=0.242 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 037477 130 TVYSLMLRNLVNKDSLKQFWVTLRRMKEDHCYIEEETYLSILGVLKKA 177 (639)
Q Consensus 130 ~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~~~~ 177 (639)
..|. +|-.|.|.|.+++|.++.++.... +.--...|...+..++..
T Consensus 154 p~Wa-~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~s 199 (661)
T 2qx5_A 154 PIWA-LIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYASS 199 (661)
T ss_dssp EHHH-HHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC---
T ss_pred ccHH-HHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHhC
Confidence 3554 577788899999999888665432 111124566777777643
No 322
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=22.86 E-value=1.4e+02 Score=18.71 Aligned_cols=31 Identities=26% Similarity=0.464 Sum_probs=23.6
Q ss_pred HHHhhhCCCCCHHHHHHHHHhcCCChHHHHHHH
Q 037477 84 NKLEELSPKLTHESVVYVLRKLDNDPEKASAFF 116 (639)
Q Consensus 84 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f 116 (639)
..|..++ ++.+.+...|+.+.++++.|..++
T Consensus 13 ~~L~~MG--F~~~~a~~AL~~~~~n~e~A~e~L 43 (49)
T 1ify_A 13 TEIMSMG--YERERVVAALRASYNNPHRAVEYL 43 (49)
T ss_dssp HHHHHTT--CCHHHHHHHHHTTTSCSHHHHHHH
T ss_pred HHHHHcC--CCHHHHHHHHHHhCCCHHHHHHHH
Confidence 3444555 588889999999888999987654
No 323
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=22.64 E-value=1.9e+02 Score=23.08 Aligned_cols=38 Identities=11% Similarity=-0.135 Sum_probs=15.7
Q ss_pred CCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 037477 491 QKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARR 529 (639)
Q Consensus 491 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 529 (639)
.+..-.|.++++.+.+. +...+..|...-++.+...|-
T Consensus 34 ~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 34 SMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp CSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCC
Confidence 33344444555544433 223333333333444444443
No 324
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=22.31 E-value=1.5e+02 Score=18.32 Aligned_cols=33 Identities=21% Similarity=0.272 Sum_probs=18.2
Q ss_pred HHHHHhCCCCCChHhHHHHHhhcCCHHHHHHHH
Q 037477 537 LRLMKKQNYPPFPEPFVQYISKFGTVEDASEFL 569 (639)
Q Consensus 537 ~~~m~~~~~~p~~~~~~~ll~~~g~~~~a~~~~ 569 (639)
++.+.+.|+.........+....|+++.|.+++
T Consensus 11 i~~L~~MGF~d~~~~~~AL~~~~gnv~~Ave~L 43 (46)
T 2bwb_A 11 LRQLNDMGFFDFDRNVAALRRSGGSVQGALDSL 43 (46)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence 344555565333334455555667777776654
No 325
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=22.15 E-value=2e+02 Score=23.62 Aligned_cols=73 Identities=12% Similarity=0.122 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCchhh
Q 037477 109 PEKASAFFNWVCDKKQFRPSSTVYSLMLRNLVNKDSLKQFWVTLRRMKED--HCYIEEETYLSILGVLKKAKKASD 182 (639)
Q Consensus 109 ~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~--g~~~~~~t~~~ll~~~~~~~~~~~ 182 (639)
.+.++.-+....+..|.+.+.. =..++..+...+..-.|.++++.+.+. +...+..|.---|..+...|.+..
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 3455555555555577776554 345667777777777888889888887 666677777777788888876544
No 326
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=21.72 E-value=2.4e+02 Score=28.74 Aligned_cols=89 Identities=11% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 037477 339 CSLLLRSISSINNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGL 418 (639)
Q Consensus 339 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 418 (639)
|..-+..+..++..+.........++...-.--+..-...++..|.+.|-.+.|.++++.+-..-+.-+..- ..+..|
T Consensus 482 W~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~~g~~g--eAL~~f 559 (570)
T 3f3f_C 482 WPVAIGLIALSATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLSAHNII--ESIANF 559 (570)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC-----------------
T ss_pred hhHHHHHHhcCCccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHCccHH--HHHHHH
Q ss_pred HhcCCHHHHHH
Q 037477 419 CKAGRFEDACN 429 (639)
Q Consensus 419 ~~~g~~~~A~~ 429 (639)
+++|+++.+..
T Consensus 560 ~rA~~~~~Vk~ 570 (570)
T 3f3f_C 560 SRAGKYELVKS 570 (570)
T ss_dssp -----------
T ss_pred HHcCChhhccC
No 327
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=21.40 E-value=3.8e+02 Score=22.84 Aligned_cols=32 Identities=13% Similarity=0.009 Sum_probs=14.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037477 421 AGRFEDACNVLDEMEENGCIPDIKTWTILIQG 452 (639)
Q Consensus 421 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~ 452 (639)
..+.+.|+-.+.+|.+.|..|....-..++-+
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~A 51 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLAIA 51 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34455555555555555544433333333333
No 328
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=21.26 E-value=3e+02 Score=24.34 Aligned_cols=45 Identities=4% Similarity=-0.035 Sum_probs=19.3
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHh--HHHHHHHHHhcCCHHHHHHH
Q 037477 386 LGRFDEAEKMMKAMKNAGFEPDNIT--YSQVIFGLCKAGRFEDACNV 430 (639)
Q Consensus 386 ~g~~~~A~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~ 430 (639)
.|+.....++++.+.+.|..++... -.+.+...++.|+.+-+..+
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 238 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL 238 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred ccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence 3443344455555555554443221 11223334455665544333
No 329
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=21.11 E-value=2.4e+02 Score=22.73 Aligned_cols=35 Identities=11% Similarity=0.028 Sum_probs=15.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 037477 423 RFEDACNVLDEMEENGCIPDIKTWTILIQGHCAAN 457 (639)
Q Consensus 423 ~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g 457 (639)
..-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555554444444444433444444443
No 330
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=20.93 E-value=4.2e+02 Score=23.13 Aligned_cols=51 Identities=16% Similarity=0.207 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 037477 391 EAEKMMKAMKNAGFEPD-NITYSQVIFGLCKAGRFEDACNVLDEMEENGCIP 441 (639)
Q Consensus 391 ~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 441 (639)
.+..+|..|...|+-.. ..-|......+...|++.+|.++|+.-++.+..|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44455555555544322 2334444455555555555555555555554444
No 331
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=20.87 E-value=3.8e+02 Score=22.53 Aligned_cols=152 Identities=16% Similarity=0.023 Sum_probs=70.9
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037477 372 SKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACNVLDEMEENGCIPDIKTWTILIQ 451 (639)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~ 451 (639)
+..+-...+..+.+.|+.+....+.+.+. .++...-...+.++.+.|..+ +...+.++.. .++..+-...+.
T Consensus 32 ~~~vR~~A~~~L~~~~~~~~~~~L~~~l~----~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~ 103 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDERAVEPLIKALK----DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAV 103 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTT----CSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHc----CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHH
Confidence 33334444555555555333333333222 345555555556666666533 3333333332 256666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 037477 452 GHCAANEVDRALLCFAKMMEKNYDADADLLDVLINGFLSQKRVNGAYKLLVEMIEKVRLRPWQATFKTLIEKLLGARRLE 531 (639)
Q Consensus 452 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 531 (639)
++.+.|+.+ +...+..+.+ .++..+-...+.++.+.|..+ +...+..+.+ .++...-...+.++.+.|. .
T Consensus 104 aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~-~ 173 (211)
T 3ltm_A 104 ALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK----DEDGWVRQSAADALGEIGG-E 173 (211)
T ss_dssp HHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHCS-H
T ss_pred HHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc----CCCHHHHHHHHHHHHHhCc-h
Confidence 666666543 3333333332 345555555555666555533 3333333322 2344455555555665554 3
Q ss_pred HHHHHHHHHH
Q 037477 532 EAMNLLRLMK 541 (639)
Q Consensus 532 ~A~~~~~~m~ 541 (639)
++...+..+.
T Consensus 174 ~~~~~L~~~l 183 (211)
T 3ltm_A 174 RVRAAMEKLA 183 (211)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 3444444443
No 332
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=20.76 E-value=2.6e+02 Score=22.33 Aligned_cols=57 Identities=14% Similarity=0.253 Sum_probs=35.4
Q ss_pred ccCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 037477 258 EHSGYKHNTITYNGILRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRM 316 (639)
Q Consensus 258 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 316 (639)
++.|++++..= ..++..+...+ .-.|.++++.+.+.+...+..|.-..+..+...|-
T Consensus 11 ~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 11 RQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 45666655432 33444455555 66788888888877766677765555666666553
No 333
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=20.65 E-value=4e+02 Score=22.78 Aligned_cols=36 Identities=14% Similarity=0.131 Sum_probs=18.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 037477 421 AGRFEDACNVLDEMEENGCIPDIKTWTILIQGHCAAN 457 (639)
Q Consensus 421 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g 457 (639)
..+.+.|+-.+.+|.+.| .|....-..++-+....|
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 455666666666666666 444444444444444443
No 334
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=20.57 E-value=84 Score=20.75 Aligned_cols=35 Identities=9% Similarity=0.042 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HhcCc
Q 037477 145 LKQFWVTLRRMKEDHCYIEEETYLSILGVL-KKAKK 179 (639)
Q Consensus 145 ~~~a~~l~~~m~~~g~~~~~~t~~~ll~~~-~~~~~ 179 (639)
.++|...|.+|.+..-.++..||..+++.+ ++-.+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPr 37 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPR 37 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCc
Confidence 357778888877655445668888888888 55543
No 335
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=20.46 E-value=84 Score=26.47 Aligned_cols=186 Identities=10% Similarity=0.046 Sum_probs=0.0
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHH---HHHHHHHHhhc
Q 037477 273 LRVLARHESVRDFWNVVEEMKKEGYEMDIDTYIKISRQFQKFRMMEDAVKLFEFMMDGPYKPSVQD---CSLLLRSISSI 349 (639)
Q Consensus 273 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~---~~~ll~~~~~~ 349 (639)
+...+..|+.+.+..++..-...--..|..-++.+..++.... .++++.+.+.|..++... .+.+..++..
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~- 82 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNND-----IEIAKALIDRGADINLQNSISDSPYLYAGAQ- 82 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTC-----HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-
T ss_pred HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCC-----HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-
Q ss_pred CCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 037477 350 NNPDLGLVFRVANKYESLGNSLSKSVYDGIHRALTKLGRFDEAEKMMKAMKNAGFEPDNITYSQVIFGLCKAGRFEDACN 429 (639)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 429 (639)
....+.+.+-.-...........-.+.+...+..|+.+-+..+++.-...--..|..-++.+..+.........-.+
T Consensus 83 ---~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~ 159 (201)
T 3hra_A 83 ---GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQD 159 (201)
T ss_dssp ---TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHH
T ss_pred ---CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHH
Q ss_pred HHHHHHHCCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHH
Q 037477 430 VLDEMEENGCIPDIKTWT--ILIQGHCAANEVDRALLCFA 467 (639)
Q Consensus 430 ~~~~m~~~~~~p~~~t~~--~li~~~~~~g~~~~a~~~~~ 467 (639)
+.+.+.+.|..++..... +-+...++.|+.+-+.-+++
T Consensus 160 ~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 199 (201)
T 3hra_A 160 IVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199 (201)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHh
No 336
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=20.20 E-value=1.3e+02 Score=17.49 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=19.9
Q ss_pred CCCHHHHHHHHHhcCCChHHHHHHH
Q 037477 92 KLTHESVVYVLRKLDNDPEKASAFF 116 (639)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~A~~~f 116 (639)
-++.+.+...|..+.++++.|...+
T Consensus 15 Gf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 15 GFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4577888888999888999887654
No 337
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=20.08 E-value=1.2e+02 Score=20.12 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=20.4
Q ss_pred CCCHHHHHHHHHhcCCChHHHHHH
Q 037477 92 KLTHESVVYVLRKLDNDPEKASAF 115 (639)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~A~~~ 115 (639)
-++.+...+.|+...++++.|.+.
T Consensus 30 GFs~~qA~kALKat~~NvErAaDW 53 (63)
T 1wgn_A 30 GYSYECVLRAMKKKGENIEQILDY 53 (63)
T ss_dssp HCCHHHHHHHHHHHCSCHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 378899999999999999988763
Done!