BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037483
(693 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 61/156 (39%), Gaps = 34/156 (21%)
Query: 404 SIDGCFKLENVSETLGQVEI---------LEELDISGTTIREPPSSIFAIKNLKKLSFSG 454
SI C +L + E L + L+ L + T IR P+SI ++NLK L
Sbjct: 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRN 215
Query: 455 CSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGN 514
P + +G +++ L L +LDL C P G
Sbjct: 216 S-------------PLSALGPAIH----------HLPKLEELDLRGCTALRN-YPPIFGG 251
Query: 515 LCSLKELYLSK-NNFVTLPASISGLLNLKELELEDC 549
LK L L +N +TLP I L L++L+L C
Sbjct: 252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 490 LCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPASISGLLNLKELELEDC 549
L L + GL E +P+ L+ L L++N LPASI+ L L+EL + C
Sbjct: 103 LSHLQHXTIDAAGLXE--LPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC 160
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 487 LSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPASISGLLNLKELEL 546
+ L +L LDLS+ L ++P ++G+ LK Y N TLP L NL+ L +
Sbjct: 266 IKNLSNLRVLDLSHNRLT--SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGV 323
Query: 547 EDCALK 552
E L+
Sbjct: 324 EGNPLE 329
>pdb|2G7R|A Chain A, X-Ray Structure Of The Death Domain Of The Human Mucosa
Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|2G7R|B Chain B, X-Ray Structure Of The Death Domain Of The Human Mucosa
Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
Length = 117
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Query: 533 ASISGLLNLKELELEDCALKLRKSDCTIIKCIDSLKLLVNNGLAISMLQEYLEAMS---- 588
A G L L L+LE C+LK+ + + + C+ LKL+ G ++ L ++L+AM
Sbjct: 52 AGSRGRLRLSCLDLEQCSLKVLEPEGSPSLCL--LKLMGEKGCTVTELSDFLQAMEHTEV 109
Query: 589 ---LSPP 592
LSPP
Sbjct: 110 LQLLSPP 116
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 486 SLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLP-ASISGLLNLKEL 544
+ GL L L L CGL E P L +L+ LYL NN LP + L NL L
Sbjct: 99 TFRGLGHLHTLHLDRCGLQELG-PGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHL 157
Query: 545 ELE 547
L
Sbjct: 158 FLH 160
>pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
pdb|1LLQ|B Chain B, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
pdb|1O0S|A Chain A, Crystal Structure Of Ascaris Suum Malic Enzyme Complexed
With Nadh
pdb|1O0S|B Chain B, Crystal Structure Of Ascaris Suum Malic Enzyme Complexed
With Nadh
Length = 605
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 10/56 (17%)
Query: 204 RDPPNKIMSILQISFDGLQDSEKKIFLDVACFFKWKSREYVTKILEACGFSPVIGI 259
R+ PN + +Q+ DGLQD +K+F V C ++V +++ ++P +G+
Sbjct: 87 REQPNDLARYIQL--DGLQDRNEKLFYRVVC-------DHVKELMPIV-YTPTVGL 132
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 14 ETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGS 72
+T K +I L + + ++D G + +IGI G G+GKTT R + I+ + EGS
Sbjct: 267 KTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD-EGS 324
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 41 VRMIGICGMGGLGKTTLVRAVYD 63
R GICG G GK+TL+RA+ +
Sbjct: 461 ARRYGICGPNGCGKSTLMRAIAN 483
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 41 VRMIGICGMGGLGKTTLVRAVYD 63
R GICG G GK+TL RA+ +
Sbjct: 455 ARRYGICGPNGCGKSTLXRAIAN 477
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 41 VRMIGICGMGGLGKTTLVRAVYD 63
R GICG G GK+TL RA+ +
Sbjct: 461 ARRYGICGPNGCGKSTLXRAIAN 483
>pdb|1F48|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1IHU|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase In Complex With
Mg-Adp-Alf3
pdb|1II0|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1II0|B Chain B, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1II9|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
pdb|1II9|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
Length = 589
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 7 SKIPVKSETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAV 61
S PV S + + ++ + L +L+D+ ++ +I + G GG+GKTT+ A+
Sbjct: 293 STQPVASPSSDEYLQQRPDIPSLSALVDDIARNEHGLIMLMGKGGVGKTTMAAAI 347
>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|F Chain F, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|G Chain G, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|H Chain H, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
Length = 457
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 491 CSLSKLDLSYCGLGE---GAIPNDIGNLCSLKELYLSKN 526
C + KL L CGL E G +P + +L +L+EL+L+ N
Sbjct: 81 CKIQKLSLQNCGLTEAGCGILPGMLRSLSTLRELHLNDN 119
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 5 ISSKIPVKSETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVR 59
+S ++ V+ ETL + R+ + ++ G +IGI G G+GKTT V+
Sbjct: 346 LSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVK 400
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 475 KSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPN--DIGNLCSLKELYLSKNNFVTLP 532
+SLY + ++ L L+KLD L + I + + L L+ LYLSKN+ L
Sbjct: 134 ESLYLGNNKITDITVLSRLTKLDT--LSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLR 191
Query: 533 ASISGLLNLKELEL 546
A ++GL NL LEL
Sbjct: 192 A-LAGLKNLDVLEL 204
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,808,635
Number of Sequences: 62578
Number of extensions: 744805
Number of successful extensions: 2130
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 2082
Number of HSP's gapped (non-prelim): 79
length of query: 693
length of database: 14,973,337
effective HSP length: 106
effective length of query: 587
effective length of database: 8,340,069
effective search space: 4895620503
effective search space used: 4895620503
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)