Query 037483
Match_columns 693
No_of_seqs 759 out of 4493
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 12:45:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037483.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037483hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 9.1E-73 2E-77 664.6 56.8 624 1-645 167-1005(1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 8.7E-54 1.9E-58 476.8 24.1 415 20-454 161-651 (889)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.7E-35 3.8E-40 299.8 11.4 234 22-256 1-284 (287)
4 PLN00113 leucine-rich repeat r 99.8 8E-20 1.7E-24 216.6 14.9 214 335-551 137-368 (968)
5 PLN00113 leucine-rich repeat r 99.8 5.7E-20 1.2E-24 217.8 13.5 233 335-572 115-366 (968)
6 KOG4194 Membrane glycoprotein 99.8 5E-21 1.1E-25 193.0 2.4 270 334-613 193-487 (873)
7 KOG0444 Cytoskeletal regulator 99.8 7.4E-22 1.6E-26 200.2 -4.4 245 325-572 113-372 (1255)
8 KOG0444 Cytoskeletal regulator 99.7 9.8E-20 2.1E-24 184.9 -2.3 225 326-567 66-296 (1255)
9 KOG4194 Membrane glycoprotein 99.7 9.6E-19 2.1E-23 176.7 1.1 220 333-575 168-405 (873)
10 KOG0617 Ras suppressor protein 99.7 2.2E-19 4.7E-24 153.6 -4.9 162 335-536 30-193 (264)
11 KOG0617 Ras suppressor protein 99.7 9.9E-19 2.2E-23 149.6 -4.1 167 358-561 29-195 (264)
12 KOG0472 Leucine-rich repeat pr 99.6 9E-19 1.9E-23 169.4 -9.4 206 327-551 103-309 (565)
13 PLN03210 Resistant to P. syrin 99.6 4E-15 8.6E-20 176.8 16.9 222 321-551 641-905 (1153)
14 KOG0472 Leucine-rich repeat pr 99.6 3.2E-18 7E-23 165.6 -8.0 182 325-535 124-316 (565)
15 KOG4237 Extracellular matrix p 99.6 8.5E-17 1.8E-21 155.7 -0.9 245 342-587 71-374 (498)
16 PRK04841 transcriptional regul 99.6 1.6E-13 3.4E-18 162.1 22.9 263 12-293 9-335 (903)
17 PRK15370 E3 ubiquitin-protein 99.5 7.6E-14 1.7E-18 155.0 10.4 191 326-552 189-380 (754)
18 PRK15387 E3 ubiquitin-protein 99.5 3.1E-13 6.8E-18 149.1 14.1 223 326-575 212-458 (788)
19 KOG0618 Serine/threonine phosp 99.4 6.4E-15 1.4E-19 157.4 -1.6 226 337-574 218-464 (1081)
20 KOG0618 Serine/threonine phosp 99.4 3.4E-15 7.4E-20 159.5 -4.2 199 326-551 252-464 (1081)
21 PRK15370 E3 ubiquitin-protein 99.4 1.3E-13 2.8E-18 153.1 7.6 191 326-552 210-401 (754)
22 COG3899 Predicted ATPase [Gene 99.4 1.8E-12 4E-17 146.9 16.2 271 18-293 1-389 (849)
23 PRK15387 E3 ubiquitin-protein 99.4 1.8E-12 3.9E-17 143.2 12.7 213 339-575 202-435 (788)
24 cd00116 LRR_RI Leucine-rich re 99.4 6.2E-14 1.3E-18 144.6 0.3 192 333-551 76-290 (319)
25 TIGR00635 ruvB Holliday juncti 99.3 2.5E-11 5.5E-16 123.8 15.7 250 17-275 4-293 (305)
26 PRK00080 ruvB Holliday junctio 99.3 9.2E-12 2E-16 127.7 11.9 254 13-274 21-313 (328)
27 COG2909 MalT ATP-dependent tra 99.3 8.9E-11 1.9E-15 125.9 17.6 264 12-294 14-342 (894)
28 cd00116 LRR_RI Leucine-rich re 99.3 4.1E-13 8.9E-18 138.5 -1.1 219 330-575 43-291 (319)
29 KOG0532 Leucine-rich repeat (L 99.3 1.9E-13 4.2E-18 138.7 -4.2 168 342-551 79-246 (722)
30 KOG3207 Beta-tubulin folding c 99.2 3.8E-12 8.3E-17 125.6 2.3 185 334-551 142-338 (505)
31 KOG3207 Beta-tubulin folding c 99.2 2.1E-12 4.6E-17 127.4 -0.4 182 335-551 118-313 (505)
32 PRK00411 cdc6 cell division co 99.2 3.5E-09 7.7E-14 112.3 23.7 253 12-271 25-358 (394)
33 KOG0532 Leucine-rich repeat (L 99.2 6.7E-13 1.5E-17 134.8 -5.2 183 326-550 86-271 (722)
34 PF01637 Arch_ATPase: Archaeal 99.2 5.1E-11 1.1E-15 116.8 7.7 160 19-182 1-233 (234)
35 KOG1259 Nischarin, modulator o 99.2 3.8E-12 8.3E-17 119.3 -0.4 128 421-575 283-412 (490)
36 COG4886 Leucine-rich repeat (L 99.1 4.1E-11 8.9E-16 127.2 6.1 177 334-551 112-289 (394)
37 KOG4237 Extracellular matrix p 99.1 3E-12 6.5E-17 124.6 -3.6 221 351-575 58-335 (498)
38 TIGR02928 orc1/cdc6 family rep 99.1 2.5E-08 5.3E-13 104.7 23.4 255 10-271 8-350 (365)
39 PF14580 LRR_9: Leucine-rich r 99.1 6.2E-11 1.3E-15 107.3 3.1 35 512-546 109-147 (175)
40 KOG1259 Nischarin, modulator o 99.1 1.4E-11 3E-16 115.6 -1.3 127 384-551 283-411 (490)
41 PF14580 LRR_9: Leucine-rich r 99.0 1.1E-10 2.5E-15 105.6 3.0 105 420-551 17-125 (175)
42 PRK06893 DNA replication initi 99.0 4.4E-09 9.6E-14 101.6 13.4 143 41-185 39-205 (229)
43 PF05729 NACHT: NACHT domain 99.0 1.8E-09 3.9E-14 99.4 10.0 111 42-152 1-163 (166)
44 COG4886 Leucine-rich repeat (L 99.0 4.2E-10 9E-15 119.5 5.5 190 342-572 97-287 (394)
45 COG2256 MGS1 ATPase related to 99.0 1.7E-09 3.7E-14 106.7 8.1 160 13-178 20-207 (436)
46 COG3903 Predicted ATPase [Gene 98.9 3E-10 6.6E-15 112.8 2.6 250 40-293 13-317 (414)
47 TIGR03015 pepcterm_ATPase puta 98.9 3E-08 6.5E-13 99.3 17.1 161 26-187 28-242 (269)
48 KOG1909 Ran GTPase-activating 98.9 1.5E-10 3.2E-15 111.6 -0.1 198 327-551 81-310 (382)
49 TIGR03420 DnaA_homol_Hda DnaA 98.8 6E-08 1.3E-12 94.3 14.0 166 16-186 14-204 (226)
50 PF05496 RuvB_N: Holliday junc 98.8 2.9E-08 6.3E-13 91.7 10.9 170 13-188 20-226 (233)
51 PRK13342 recombination factor 98.8 3.1E-08 6.6E-13 104.8 11.8 167 13-185 8-198 (413)
52 KOG4658 Apoptotic ATPase [Sign 98.8 3.2E-09 6.9E-14 120.4 4.1 233 334-567 567-848 (889)
53 PRK14961 DNA polymerase III su 98.8 6E-07 1.3E-11 93.2 20.0 164 14-181 13-218 (363)
54 PRK07471 DNA polymerase III su 98.7 6E-07 1.3E-11 92.3 19.0 165 12-184 14-239 (365)
55 PRK07003 DNA polymerase III su 98.7 5.2E-07 1.1E-11 97.9 19.0 165 14-182 13-220 (830)
56 PRK14963 DNA polymerase III su 98.7 6.7E-07 1.5E-11 95.8 19.0 164 14-181 11-215 (504)
57 PRK12402 replication factor C 98.7 4.9E-07 1.1E-11 93.8 17.6 165 13-182 11-225 (337)
58 PRK04195 replication factor C 98.7 3.2E-07 6.9E-12 99.2 15.9 165 13-183 10-202 (482)
59 PRK08903 DnaA regulatory inact 98.7 2.3E-07 5E-12 90.0 13.3 170 14-187 15-203 (227)
60 PRK14960 DNA polymerase III su 98.7 9.4E-07 2E-11 94.9 18.5 164 14-181 12-217 (702)
61 PRK00440 rfc replication facto 98.7 9.4E-07 2E-11 91.0 18.2 162 14-181 14-201 (319)
62 PRK09087 hypothetical protein; 98.7 1.3E-07 2.9E-12 90.7 10.3 136 41-183 44-195 (226)
63 KOG1909 Ran GTPase-activating 98.7 4.7E-09 1E-13 101.3 0.3 189 336-551 28-253 (382)
64 PRK08727 hypothetical protein; 98.7 4.2E-07 9.1E-12 88.0 13.8 159 17-180 19-201 (233)
65 TIGR02397 dnaX_nterm DNA polym 98.6 2.7E-06 5.9E-11 88.9 20.4 166 14-184 11-219 (355)
66 PRK08084 DNA replication initi 98.6 5.7E-07 1.2E-11 87.3 14.0 141 41-184 45-210 (235)
67 PRK05564 DNA polymerase III su 98.6 1.8E-06 3.8E-11 88.1 17.5 159 17-183 4-190 (313)
68 PLN03150 hypothetical protein; 98.6 8E-08 1.7E-12 106.9 8.0 106 423-551 419-527 (623)
69 PLN03025 replication factor C 98.6 1.9E-06 4E-11 88.1 17.3 162 13-179 9-196 (319)
70 PRK14949 DNA polymerase III su 98.6 6.6E-07 1.4E-11 99.1 14.7 166 14-183 13-220 (944)
71 PRK08691 DNA polymerase III su 98.6 1.6E-06 3.4E-11 94.1 17.1 166 14-183 13-220 (709)
72 PRK14962 DNA polymerase III su 98.6 2.9E-06 6.3E-11 90.2 19.0 169 13-185 10-221 (472)
73 PTZ00112 origin recognition co 98.6 8.5E-07 1.8E-11 96.8 14.8 216 10-233 748-1030(1164)
74 PRK12323 DNA polymerase III su 98.6 6.5E-07 1.4E-11 95.9 13.8 165 14-182 13-224 (700)
75 PRK14964 DNA polymerase III su 98.6 3.3E-06 7.2E-11 89.3 18.5 163 14-180 10-214 (491)
76 PRK09112 DNA polymerase III su 98.6 1.8E-06 3.8E-11 88.3 15.6 167 12-184 18-241 (351)
77 PRK14955 DNA polymerase III su 98.5 2.7E-06 5.8E-11 89.5 17.1 165 13-182 12-227 (397)
78 PRK06645 DNA polymerase III su 98.5 5.3E-06 1.1E-10 88.6 19.1 164 13-180 17-226 (507)
79 PRK07940 DNA polymerase III su 98.5 1.9E-06 4.1E-11 89.4 15.3 160 17-183 5-213 (394)
80 PRK14957 DNA polymerase III su 98.5 2.1E-06 4.6E-11 92.1 15.9 166 14-183 13-221 (546)
81 PRK06620 hypothetical protein; 98.5 7.4E-07 1.6E-11 84.7 11.2 158 14-179 14-185 (214)
82 TIGR01242 26Sp45 26S proteasom 98.5 2.5E-07 5.5E-12 96.4 8.4 161 14-177 119-328 (364)
83 TIGR00678 holB DNA polymerase 98.5 2.7E-06 5.8E-11 79.9 14.5 142 28-179 3-187 (188)
84 PF13855 LRR_8: Leucine rich r 98.5 5.6E-08 1.2E-12 72.2 2.3 59 491-551 1-61 (61)
85 PRK14958 DNA polymerase III su 98.5 5.4E-06 1.2E-10 89.2 18.3 165 14-182 13-219 (509)
86 PLN03150 hypothetical protein; 98.5 2E-07 4.3E-12 103.8 7.4 105 339-456 419-526 (623)
87 PRK13341 recombination factor 98.5 7.2E-07 1.6E-11 99.3 11.5 163 13-181 24-215 (725)
88 PRK14951 DNA polymerase III su 98.5 8.3E-06 1.8E-10 88.9 19.3 165 14-182 13-224 (618)
89 PRK05642 DNA replication initi 98.5 2.2E-06 4.7E-11 83.1 13.4 141 41-184 45-209 (234)
90 KOG0531 Protein phosphatase 1, 98.5 1.7E-08 3.7E-13 107.3 -1.5 174 334-551 91-267 (414)
91 KOG1859 Leucine-rich repeat pr 98.5 1.7E-09 3.6E-14 113.5 -8.9 100 424-551 166-266 (1096)
92 PF13173 AAA_14: AAA domain 98.5 5.4E-07 1.2E-11 78.5 8.2 102 41-143 2-126 (128)
93 PRK05896 DNA polymerase III su 98.5 2.3E-06 5.1E-11 91.9 14.4 162 13-178 12-215 (605)
94 PRK14956 DNA polymerase III su 98.5 1.8E-06 4E-11 90.1 13.1 163 13-179 14-218 (484)
95 KOG0531 Protein phosphatase 1, 98.5 3.2E-08 6.9E-13 105.2 0.1 38 358-395 91-128 (414)
96 KOG1859 Leucine-rich repeat pr 98.5 3.2E-09 6.9E-14 111.4 -7.4 177 331-551 102-291 (1096)
97 PRK14970 DNA polymerase III su 98.5 1.2E-05 2.6E-10 84.2 19.2 165 13-181 13-207 (367)
98 PRK07994 DNA polymerase III su 98.4 2.5E-06 5.5E-11 93.0 14.0 166 14-183 13-220 (647)
99 KOG2028 ATPase related to the 98.4 4.9E-07 1.1E-11 87.8 7.1 132 12-151 133-293 (554)
100 cd00009 AAA The AAA+ (ATPases 98.4 1.4E-06 3.1E-11 78.2 10.0 100 20-122 1-130 (151)
101 PRK14969 DNA polymerase III su 98.4 9.5E-06 2.1E-10 88.0 17.5 162 14-179 13-216 (527)
102 PRK14954 DNA polymerase III su 98.4 1.8E-05 3.9E-10 86.6 19.6 161 14-178 13-223 (620)
103 PF00308 Bac_DnaA: Bacterial d 98.4 3.1E-06 6.6E-11 81.0 11.7 165 16-183 8-208 (219)
104 PRK09111 DNA polymerase III su 98.4 1.2E-05 2.5E-10 88.0 17.6 166 14-183 21-233 (598)
105 PF13855 LRR_8: Leucine rich r 98.4 3.7E-07 8.1E-12 67.7 4.3 59 338-396 1-60 (61)
106 PRK14950 DNA polymerase III su 98.4 2.3E-05 5.1E-10 86.5 19.8 167 14-184 13-222 (585)
107 PRK14959 DNA polymerase III su 98.4 2.1E-05 4.6E-10 85.1 18.6 170 14-187 13-225 (624)
108 PRK14953 DNA polymerase III su 98.3 4.1E-05 8.9E-10 82.0 20.3 167 14-184 13-221 (486)
109 PRK14952 DNA polymerase III su 98.3 3.7E-05 8E-10 83.6 20.1 166 14-183 10-220 (584)
110 PRK15386 type III secretion pr 98.3 2.7E-06 5.8E-11 86.8 10.5 133 336-527 50-188 (426)
111 PRK06305 DNA polymerase III su 98.3 3.2E-05 7E-10 82.3 18.8 162 14-180 14-219 (451)
112 PRK07133 DNA polymerase III su 98.3 3.6E-05 7.8E-10 84.7 19.0 164 13-180 14-216 (725)
113 PRK07764 DNA polymerase III su 98.3 2.9E-05 6.3E-10 87.9 18.5 163 15-181 13-219 (824)
114 PRK08451 DNA polymerase III su 98.3 0.00012 2.5E-09 78.6 21.2 166 14-183 11-218 (535)
115 PRK03992 proteasome-activating 98.3 5E-06 1.1E-10 87.0 10.7 155 16-176 130-336 (389)
116 COG1474 CDC6 Cdc6-related prot 98.3 5.5E-05 1.2E-09 77.8 18.0 252 10-271 10-334 (366)
117 PRK06647 DNA polymerase III su 98.3 6.8E-05 1.5E-09 81.6 19.6 165 14-183 13-220 (563)
118 PRK14971 DNA polymerase III su 98.3 5.5E-05 1.2E-09 83.4 19.1 163 14-181 14-220 (614)
119 PHA02544 44 clamp loader, smal 98.2 7.6E-06 1.7E-10 83.9 11.6 133 13-150 17-171 (316)
120 KOG2120 SCF ubiquitin ligase, 98.2 1.6E-08 3.4E-13 95.4 -7.5 182 339-550 186-374 (419)
121 PF13191 AAA_16: AAA ATPase do 98.2 1.5E-06 3.2E-11 81.6 5.5 51 18-68 1-51 (185)
122 TIGR02881 spore_V_K stage V sp 98.2 2.1E-05 4.6E-10 77.9 13.7 137 17-153 6-192 (261)
123 PRK14948 DNA polymerase III su 98.2 0.00011 2.3E-09 81.1 20.2 166 14-183 13-222 (620)
124 KOG2982 Uncharacterized conser 98.2 2E-07 4.4E-12 88.1 -1.1 202 337-551 44-261 (418)
125 COG2255 RuvB Holliday junction 98.2 3E-05 6.4E-10 73.6 13.1 250 13-276 22-316 (332)
126 PRK15386 type III secretion pr 98.2 3.5E-06 7.5E-11 86.0 7.2 110 318-459 56-170 (426)
127 PRK14087 dnaA chromosomal repl 98.2 1.7E-05 3.7E-10 84.3 12.7 147 41-187 141-323 (450)
128 PRK05563 DNA polymerase III su 98.2 0.00015 3.3E-09 79.4 20.2 164 13-180 12-217 (559)
129 PF14516 AAA_35: AAA-like doma 98.2 0.00035 7.6E-09 71.6 21.7 168 12-190 6-246 (331)
130 TIGR03345 VI_ClpV1 type VI sec 98.2 1.8E-05 4E-10 90.6 13.5 135 13-152 183-363 (852)
131 PRK07399 DNA polymerase III su 98.1 9.4E-05 2E-09 74.7 16.8 159 17-183 4-221 (314)
132 TIGR00362 DnaA chromosomal rep 98.1 1.7E-05 3.6E-10 84.2 11.5 164 18-183 112-310 (405)
133 PRK05707 DNA polymerase III su 98.1 4.4E-05 9.4E-10 77.5 13.3 138 40-183 21-203 (328)
134 PRK14965 DNA polymerase III su 98.1 0.00014 3.1E-09 80.0 18.2 166 14-183 13-221 (576)
135 PRK00149 dnaA chromosomal repl 98.1 2.4E-05 5.2E-10 84.0 11.7 163 18-183 124-322 (450)
136 TIGR02639 ClpA ATP-dependent C 98.1 2.4E-05 5.2E-10 89.1 11.7 132 15-152 180-358 (731)
137 KOG0989 Replication factor C, 98.0 3.5E-05 7.6E-10 73.9 10.4 159 13-176 32-223 (346)
138 PTZ00202 tuzin; Provisional 98.0 1E-05 2.2E-10 82.1 7.1 56 11-66 256-311 (550)
139 TIGR03689 pup_AAA proteasome A 98.0 3.5E-05 7.6E-10 82.0 11.3 138 15-152 180-378 (512)
140 PRK14088 dnaA chromosomal repl 98.0 4.6E-05 1E-09 81.0 12.0 141 41-183 130-305 (440)
141 PRK12422 chromosomal replicati 98.0 7.8E-05 1.7E-09 79.0 13.6 137 17-153 112-285 (445)
142 COG5238 RNA1 Ran GTPase-activa 98.0 2.3E-06 4.9E-11 80.1 1.7 188 337-551 29-254 (388)
143 PF12799 LRR_4: Leucine Rich r 98.0 4.8E-06 1E-10 56.4 2.4 38 492-531 2-39 (44)
144 PRK14086 dnaA chromosomal repl 98.0 5.2E-05 1.1E-09 81.8 11.4 138 42-181 315-486 (617)
145 PF05673 DUF815: Protein of un 98.0 0.00061 1.3E-08 64.4 16.9 79 13-93 23-115 (249)
146 KOG2120 SCF ubiquitin ligase, 97.9 2.3E-07 4.9E-12 87.8 -5.9 159 333-526 205-373 (419)
147 KOG0741 AAA+-type ATPase [Post 97.9 0.00021 4.5E-09 73.5 14.5 110 40-151 537-685 (744)
148 TIGR02903 spore_lon_C ATP-depe 97.9 9.1E-05 2E-09 82.0 13.0 50 13-65 150-199 (615)
149 PTZ00454 26S protease regulato 97.9 6.8E-05 1.5E-09 78.1 11.3 160 14-177 142-351 (398)
150 PRK08769 DNA polymerase III su 97.9 0.00069 1.5E-08 68.2 18.0 150 25-184 12-209 (319)
151 PRK10865 protein disaggregatio 97.9 6E-05 1.3E-09 86.8 11.4 134 14-152 175-354 (857)
152 CHL00181 cbbX CbbX; Provisiona 97.9 0.00042 9.2E-09 69.1 16.0 137 17-153 23-210 (287)
153 CHL00095 clpC Clp protease ATP 97.9 4.6E-05 1E-09 87.8 10.4 130 17-151 179-353 (821)
154 PTZ00361 26 proteosome regulat 97.9 3E-05 6.6E-10 81.3 8.2 137 15-153 181-368 (438)
155 PF12799 LRR_4: Leucine Rich r 97.9 9.4E-06 2E-10 55.0 2.7 37 516-552 1-37 (44)
156 TIGR02880 cbbX_cfxQ probable R 97.9 0.0001 2.3E-09 73.5 10.8 135 18-152 23-208 (284)
157 PRK06871 DNA polymerase III su 97.9 0.00053 1.1E-08 69.1 15.7 146 25-179 10-199 (325)
158 KOG4579 Leucine-rich repeat (L 97.8 6.2E-07 1.3E-11 75.0 -4.3 104 424-551 29-135 (177)
159 PRK06090 DNA polymerase III su 97.8 0.0012 2.6E-08 66.4 18.1 147 25-183 11-201 (319)
160 CHL00176 ftsH cell division pr 97.8 0.00019 4.2E-09 79.2 13.1 157 16-175 182-386 (638)
161 COG5238 RNA1 Ran GTPase-activa 97.8 3E-06 6.4E-11 79.3 -0.8 176 326-528 80-284 (388)
162 PRK07993 DNA polymerase III su 97.8 0.0005 1.1E-08 70.1 15.2 148 24-180 9-201 (334)
163 COG1222 RPT1 ATP-dependent 26S 97.8 0.00021 4.6E-09 70.2 11.6 157 16-178 150-358 (406)
164 COG0593 DnaA ATPase involved i 97.8 0.00015 3.2E-09 74.4 11.1 138 16-153 87-258 (408)
165 KOG0991 Replication factor C, 97.8 0.00013 2.9E-09 66.9 9.3 83 13-98 23-127 (333)
166 TIGR03346 chaperone_ClpB ATP-d 97.8 0.00014 3E-09 84.1 12.1 133 15-152 171-349 (852)
167 KOG4579 Leucine-rich repeat (L 97.8 1.8E-06 4E-11 72.2 -2.7 105 341-459 30-137 (177)
168 PRK11034 clpA ATP-dependent Cl 97.7 0.00011 2.4E-09 82.6 9.9 131 17-152 186-362 (758)
169 PRK08058 DNA polymerase III su 97.7 0.00054 1.2E-08 70.1 13.9 132 18-151 6-181 (329)
170 TIGR01241 FtsH_fam ATP-depende 97.7 0.00016 3.5E-09 78.6 9.5 165 16-183 54-267 (495)
171 KOG2982 Uncharacterized conser 97.6 1E-05 2.2E-10 76.9 -0.6 196 336-547 69-287 (418)
172 PRK10536 hypothetical protein; 97.6 0.00029 6.2E-09 67.5 9.0 53 17-74 55-109 (262)
173 KOG3665 ZYG-1-like serine/thre 97.6 1.2E-05 2.7E-10 89.3 -0.4 57 339-395 123-183 (699)
174 PF00004 AAA: ATPase family as 97.6 0.0002 4.4E-09 62.7 7.3 23 44-66 1-23 (132)
175 PF13401 AAA_22: AAA domain; P 97.6 8E-05 1.7E-09 65.2 4.7 80 40-121 3-125 (131)
176 PF10443 RNA12: RNA12 protein; 97.6 0.0057 1.2E-07 62.7 18.2 101 84-188 148-283 (431)
177 PRK06964 DNA polymerase III su 97.5 0.0052 1.1E-07 62.5 17.7 134 40-183 20-225 (342)
178 CHL00195 ycf46 Ycf46; Provisio 97.5 0.00037 8E-09 74.4 9.8 161 16-177 227-429 (489)
179 PRK08181 transposase; Validate 97.5 0.00012 2.5E-09 71.9 5.5 81 42-122 107-209 (269)
180 PF13177 DNA_pol3_delta2: DNA 97.5 0.00071 1.5E-08 61.4 10.1 117 21-139 1-161 (162)
181 KOG1644 U2-associated snRNP A' 97.5 0.00015 3.2E-09 65.4 5.2 37 513-549 110-150 (233)
182 COG1618 Predicted nucleotide k 97.5 0.00022 4.8E-09 61.9 6.0 54 41-94 5-59 (179)
183 PRK08116 hypothetical protein; 97.5 0.00024 5.2E-09 70.2 7.1 79 42-121 115-220 (268)
184 PRK09376 rho transcription ter 97.5 0.00016 3.5E-09 73.2 5.8 48 28-77 158-206 (416)
185 KOG3665 ZYG-1-like serine/thre 97.5 4.8E-05 1E-09 84.6 2.0 155 362-550 122-286 (699)
186 PRK12377 putative replication 97.4 0.0002 4.4E-09 69.3 5.6 37 41-77 101-137 (248)
187 PRK11331 5-methylcytosine-spec 97.4 0.00041 8.8E-09 72.0 7.9 46 16-66 174-219 (459)
188 TIGR02640 gas_vesic_GvpN gas v 97.4 0.00081 1.7E-08 66.5 9.6 36 25-65 10-45 (262)
189 KOG2227 Pre-initiation complex 97.4 0.0048 1E-07 63.1 14.7 172 14-186 147-371 (529)
190 TIGR00602 rad24 checkpoint pro 97.4 0.00091 2E-08 73.4 10.5 53 13-65 80-134 (637)
191 cd01128 rho_factor Transcripti 97.4 0.00029 6.2E-09 68.4 5.9 38 40-77 15-53 (249)
192 TIGR01243 CDC48 AAA family ATP 97.4 0.0009 1.9E-08 76.6 10.5 156 17-178 178-382 (733)
193 smart00763 AAA_PrkA PrkA AAA d 97.3 0.00031 6.8E-09 70.8 5.8 53 14-66 48-103 (361)
194 KOG1644 U2-associated snRNP A' 97.3 0.00037 8E-09 62.9 5.5 65 486-551 59-125 (233)
195 KOG0733 Nuclear AAA ATPase (VC 97.3 0.0012 2.7E-08 69.3 10.0 137 16-152 189-374 (802)
196 PF00910 RNA_helicase: RNA hel 97.3 0.0004 8.7E-09 58.1 5.3 52 44-96 1-61 (107)
197 COG1373 Predicted ATPase (AAA+ 97.3 0.0032 6.9E-08 66.1 13.2 131 43-183 39-192 (398)
198 PRK09183 transposase/IS protei 97.3 0.00027 5.9E-09 69.5 4.7 80 41-121 102-205 (259)
199 PRK06696 uridine kinase; Valid 97.3 0.00052 1.1E-08 66.2 6.6 47 21-67 2-48 (223)
200 TIGR01243 CDC48 AAA family ATP 97.3 0.0013 2.9E-08 75.3 11.0 157 17-177 453-657 (733)
201 KOG2543 Origin recognition com 97.3 0.0025 5.3E-08 63.5 11.1 136 14-152 3-193 (438)
202 PF02562 PhoH: PhoH-like prote 97.2 0.00072 1.6E-08 63.0 6.7 93 22-122 5-156 (205)
203 PRK06526 transposase; Provisio 97.2 0.00019 4.2E-09 70.0 3.1 55 41-95 98-170 (254)
204 PF01695 IstB_IS21: IstB-like 97.2 0.00017 3.6E-09 66.5 2.2 38 40-77 46-83 (178)
205 KOG2739 Leucine-rich acidic nu 97.2 0.00018 4E-09 67.7 2.2 64 487-551 61-128 (260)
206 PLN00020 ribulose bisphosphate 97.2 0.0052 1.1E-07 61.8 12.4 130 40-178 147-333 (413)
207 TIGR00763 lon ATP-dependent pr 97.1 0.0025 5.5E-08 73.2 11.2 136 17-152 320-505 (775)
208 PF04665 Pox_A32: Poxvirus A32 97.1 0.00097 2.1E-08 63.6 6.4 37 41-77 13-49 (241)
209 KOG0731 AAA+-type ATPase conta 97.1 0.0023 4.9E-08 70.4 10.0 164 15-180 309-521 (774)
210 COG3267 ExeA Type II secretory 97.1 0.0076 1.7E-07 56.9 11.9 158 28-185 38-247 (269)
211 PRK06921 hypothetical protein; 97.1 0.00053 1.2E-08 67.6 4.6 53 41-93 117-186 (266)
212 COG0466 Lon ATP-dependent Lon 97.1 0.0027 5.8E-08 68.4 9.9 136 17-152 323-508 (782)
213 smart00382 AAA ATPases associa 97.1 0.0009 1.9E-08 59.2 5.5 34 42-75 3-36 (148)
214 PRK07952 DNA replication prote 97.1 0.0011 2.4E-08 64.1 6.3 37 41-77 99-135 (244)
215 TIGR00767 rho transcription te 97.1 0.00087 1.9E-08 68.4 5.8 38 40-77 167-205 (415)
216 TIGR02902 spore_lonB ATP-depen 97.1 0.0043 9.2E-08 67.8 11.6 45 17-64 65-109 (531)
217 PF13207 AAA_17: AAA domain; P 97.0 0.00053 1.2E-08 59.0 3.6 23 43-65 1-23 (121)
218 KOG4341 F-box protein containi 97.0 1.7E-05 3.6E-10 79.1 -6.5 64 334-397 160-228 (483)
219 PRK08699 DNA polymerase III su 97.0 0.019 4.1E-07 58.4 15.2 112 40-151 20-184 (325)
220 COG2607 Predicted ATPase (AAA+ 97.0 0.0053 1.1E-07 57.2 9.9 107 16-122 59-183 (287)
221 PRK06835 DNA replication prote 97.0 0.00085 1.8E-08 68.0 5.2 80 42-121 184-288 (329)
222 PRK08939 primosomal protein Dn 97.0 0.0011 2.5E-08 66.5 6.0 101 21-121 135-260 (306)
223 PHA00729 NTP-binding motif con 97.0 0.0024 5.3E-08 60.2 7.6 27 40-66 16-42 (226)
224 COG2812 DnaX DNA polymerase II 97.0 0.0028 6E-08 67.3 8.8 157 17-177 16-214 (515)
225 PRK10787 DNA-binding ATP-depen 97.0 0.0032 6.9E-08 71.7 9.9 136 17-152 322-506 (784)
226 KOG0744 AAA+-type ATPase [Post 97.0 0.0033 7.2E-08 61.0 8.4 36 41-76 177-216 (423)
227 COG1484 DnaC DNA replication p 97.0 0.0013 2.8E-08 64.3 5.9 38 40-77 104-141 (254)
228 COG0542 clpA ATP-binding subun 97.0 0.0047 1E-07 68.5 10.5 133 16-152 169-346 (786)
229 KOG2739 Leucine-rich acidic nu 96.9 0.00048 1E-08 65.0 2.3 61 490-550 90-154 (260)
230 COG0470 HolB ATPase involved i 96.9 0.0048 1E-07 63.6 10.0 126 18-144 2-173 (325)
231 TIGR01650 PD_CobS cobaltochela 96.9 0.093 2E-06 52.7 18.3 50 13-67 41-90 (327)
232 TIGR02639 ClpA ATP-dependent C 96.9 0.0086 1.9E-07 68.5 12.5 51 16-66 453-509 (731)
233 KOG0730 AAA+-type ATPase [Post 96.9 0.0043 9.3E-08 66.2 9.1 158 17-177 434-637 (693)
234 PRK10865 protein disaggregatio 96.9 0.0056 1.2E-07 70.8 10.7 51 16-66 567-623 (857)
235 PF14532 Sigma54_activ_2: Sigm 96.8 0.00035 7.5E-09 61.7 0.7 100 20-122 1-110 (138)
236 TIGR03345 VI_ClpV1 type VI sec 96.8 0.0035 7.7E-08 72.2 9.0 51 16-66 565-621 (852)
237 PF03215 Rad17: Rad17 cell cyc 96.8 0.015 3.3E-07 62.7 13.1 53 13-65 15-69 (519)
238 cd01133 F1-ATPase_beta F1 ATP 96.8 0.0019 4E-08 63.0 5.5 38 40-77 68-105 (274)
239 PRK07667 uridine kinase; Provi 96.8 0.0031 6.8E-08 59.2 6.9 42 26-68 3-44 (193)
240 PF01583 APS_kinase: Adenylyls 96.8 0.0022 4.9E-08 56.8 5.4 37 41-77 2-38 (156)
241 cd01120 RecA-like_NTPases RecA 96.8 0.0032 6.9E-08 57.3 6.8 33 43-75 1-33 (165)
242 PF07726 AAA_3: ATPase family 96.8 0.001 2.2E-08 56.2 2.9 32 44-75 2-33 (131)
243 KOG0734 AAA+-type ATPase conta 96.8 0.0044 9.5E-08 64.2 8.0 135 17-152 304-484 (752)
244 KOG0736 Peroxisome assembly fa 96.8 0.015 3.3E-07 63.2 12.2 131 10-145 664-849 (953)
245 KOG4341 F-box protein containi 96.7 5.6E-05 1.2E-09 75.4 -5.8 201 339-551 139-358 (483)
246 TIGR03346 chaperone_ClpB ATP-d 96.7 0.0063 1.4E-07 70.7 9.9 51 16-66 564-620 (852)
247 KOG2228 Origin recognition com 96.7 0.008 1.7E-07 58.9 8.8 137 15-152 22-219 (408)
248 KOG0733 Nuclear AAA ATPase (VC 96.7 0.0049 1.1E-07 65.0 7.8 113 41-153 545-693 (802)
249 PF07693 KAP_NTPase: KAP famil 96.7 0.064 1.4E-06 55.2 16.4 47 22-68 1-47 (325)
250 PRK10733 hflB ATP-dependent me 96.7 0.0075 1.6E-07 67.6 9.9 134 17-153 152-336 (644)
251 PRK08118 topology modulation p 96.7 0.0014 3.1E-08 59.7 3.3 24 43-66 3-26 (167)
252 PHA02244 ATPase-like protein 96.7 0.0038 8.3E-08 63.2 6.6 55 13-68 92-146 (383)
253 KOG1514 Origin recognition com 96.6 0.043 9.4E-07 59.3 14.4 168 15-183 394-621 (767)
254 KOG0735 AAA+-type ATPase [Post 96.6 0.015 3.3E-07 62.5 10.9 142 40-183 430-616 (952)
255 COG1875 NYN ribonuclease and A 96.6 0.0083 1.8E-07 59.5 8.1 38 22-62 229-266 (436)
256 PRK04132 replication factor C 96.6 0.087 1.9E-06 60.0 17.3 133 47-181 570-729 (846)
257 PRK13531 regulatory ATPase Rav 96.6 0.0025 5.4E-08 66.9 4.8 47 15-66 18-64 (498)
258 PF13604 AAA_30: AAA domain; P 96.6 0.011 2.4E-07 55.5 8.9 93 25-123 6-132 (196)
259 KOG2035 Replication factor C, 96.6 0.085 1.9E-06 50.5 14.3 184 15-203 11-259 (351)
260 TIGR01817 nifA Nif-specific re 96.6 0.033 7.2E-07 61.5 13.9 51 14-65 193-243 (534)
261 KOG1969 DNA replication checkp 96.5 0.0021 4.6E-08 69.1 3.8 56 40-97 325-400 (877)
262 COG0542 clpA ATP-binding subun 96.5 0.0075 1.6E-07 66.9 8.1 51 16-66 490-546 (786)
263 PRK15455 PrkA family serine pr 96.5 0.0031 6.8E-08 67.1 5.0 51 17-67 76-129 (644)
264 KOG0728 26S proteasome regulat 96.5 0.025 5.3E-07 52.9 10.1 130 18-152 147-331 (404)
265 PF10236 DAP3: Mitochondrial r 96.5 0.048 1E-06 55.2 13.3 48 133-180 258-306 (309)
266 PRK05541 adenylylsulfate kinas 96.5 0.0036 7.9E-08 57.9 4.9 37 40-76 6-42 (176)
267 COG0464 SpoVK ATPases of the A 96.4 0.016 3.4E-07 63.4 10.3 138 16-153 241-424 (494)
268 PRK11034 clpA ATP-dependent Cl 96.4 0.0089 1.9E-07 67.6 8.4 51 16-66 457-513 (758)
269 TIGR02974 phageshock_pspF psp 96.4 0.053 1.1E-06 55.5 13.3 45 19-64 1-45 (329)
270 PF13238 AAA_18: AAA domain; P 96.4 0.0027 5.8E-08 55.2 3.4 22 44-65 1-22 (129)
271 CHL00095 clpC Clp protease ATP 96.4 0.015 3.3E-07 67.3 10.1 50 16-65 508-563 (821)
272 KOG2123 Uncharacterized conser 96.4 0.00012 2.7E-09 69.0 -5.6 80 423-527 20-99 (388)
273 PRK12608 transcription termina 96.4 0.007 1.5E-07 61.5 6.3 44 25-70 119-162 (380)
274 PF03266 NTPase_1: NTPase; In 96.4 0.0088 1.9E-07 54.4 6.4 50 44-93 2-52 (168)
275 KOG1970 Checkpoint RAD17-RFC c 96.3 0.07 1.5E-06 56.0 13.1 44 22-65 87-134 (634)
276 KOG0743 AAA+-type ATPase [Post 96.3 0.06 1.3E-06 55.4 12.3 136 41-185 235-411 (457)
277 KOG1532 GTPase XAB1, interacts 96.3 0.0055 1.2E-07 58.0 4.6 32 39-70 17-48 (366)
278 cd01131 PilT Pilus retraction 96.2 0.019 4.1E-07 54.1 8.2 27 42-68 2-28 (198)
279 PF03308 ArgK: ArgK protein; 96.2 0.013 2.8E-07 56.0 6.9 43 25-68 14-56 (266)
280 KOG4308 LRR-containing protein 96.2 4.8E-05 1E-09 81.0 -10.5 185 340-551 89-302 (478)
281 PF00485 PRK: Phosphoribulokin 96.2 0.0044 9.5E-08 58.3 3.8 26 43-68 1-26 (194)
282 PRK07261 topology modulation p 96.2 0.0038 8.3E-08 57.2 3.3 23 43-65 2-24 (171)
283 PRK07132 DNA polymerase III su 96.2 0.77 1.7E-05 46.0 19.7 124 26-151 5-161 (299)
284 KOG2123 Uncharacterized conser 96.2 0.00022 4.7E-09 67.4 -5.0 79 362-456 19-99 (388)
285 PRK11889 flhF flagellar biosyn 96.2 0.038 8.3E-07 56.5 10.4 28 40-67 240-267 (436)
286 PRK15429 formate hydrogenlyase 96.1 0.11 2.5E-06 59.2 15.5 49 16-65 375-423 (686)
287 cd02019 NK Nucleoside/nucleoti 96.1 0.005 1.1E-07 46.6 3.0 23 43-65 1-23 (69)
288 PRK04040 adenylate kinase; Pro 96.1 0.0061 1.3E-07 56.7 4.2 26 41-66 2-27 (188)
289 PTZ00301 uridine kinase; Provi 96.1 0.0058 1.3E-07 57.8 4.0 29 41-69 3-31 (210)
290 PRK09270 nucleoside triphospha 96.1 0.0099 2.2E-07 57.6 5.6 30 39-68 31-60 (229)
291 PRK06762 hypothetical protein; 96.1 0.0057 1.2E-07 55.9 3.8 25 41-65 2-26 (166)
292 COG1223 Predicted ATPase (AAA+ 96.1 0.023 5E-07 53.6 7.6 155 17-177 121-319 (368)
293 KOG0652 26S proteasome regulat 96.1 0.06 1.3E-06 50.7 10.2 141 12-152 166-355 (424)
294 COG2884 FtsE Predicted ATPase 96.0 0.018 3.8E-07 51.9 6.4 48 83-130 154-205 (223)
295 PRK07276 DNA polymerase III su 96.0 0.62 1.3E-05 46.3 17.9 121 25-150 10-173 (290)
296 PRK03839 putative kinase; Prov 96.0 0.0059 1.3E-07 56.7 3.6 24 43-66 2-25 (180)
297 COG1066 Sms Predicted ATP-depe 96.0 0.018 3.9E-07 58.3 6.9 52 26-79 79-130 (456)
298 PRK08233 hypothetical protein; 96.0 0.0057 1.2E-07 56.9 3.5 25 41-65 3-27 (182)
299 PF08433 KTI12: Chromatin asso 96.0 0.0055 1.2E-07 60.4 3.4 57 42-98 2-84 (270)
300 PRK04296 thymidine kinase; Pro 96.0 0.027 5.8E-07 52.7 7.9 79 42-122 3-116 (190)
301 COG0572 Udk Uridine kinase [Nu 96.0 0.0094 2E-07 55.6 4.7 30 39-68 6-35 (218)
302 KOG0729 26S proteasome regulat 96.0 0.02 4.4E-07 54.0 6.8 73 17-94 177-280 (435)
303 cd02117 NifH_like This family 96.0 0.0081 1.7E-07 57.5 4.4 27 42-68 1-27 (212)
304 PRK06547 hypothetical protein; 96.0 0.0096 2.1E-07 54.4 4.7 27 39-65 13-39 (172)
305 PF07728 AAA_5: AAA domain (dy 96.0 0.0064 1.4E-07 53.7 3.4 22 44-65 2-23 (139)
306 PRK09361 radB DNA repair and r 95.9 0.017 3.6E-07 55.9 6.6 50 28-78 11-60 (225)
307 PRK05439 pantothenate kinase; 95.9 0.012 2.7E-07 58.8 5.6 31 37-67 82-112 (311)
308 TIGR00150 HI0065_YjeE ATPase, 95.9 0.012 2.5E-07 50.8 4.7 41 24-65 6-46 (133)
309 PF13671 AAA_33: AAA domain; P 95.9 0.007 1.5E-07 53.7 3.5 23 43-65 1-23 (143)
310 PRK05480 uridine/cytidine kina 95.9 0.0079 1.7E-07 57.4 4.0 26 40-65 5-30 (209)
311 PRK00625 shikimate kinase; Pro 95.9 0.007 1.5E-07 55.4 3.4 24 43-66 2-25 (173)
312 TIGR02237 recomb_radB DNA repa 95.9 0.014 3E-07 55.7 5.7 39 40-78 11-49 (209)
313 cd01394 radB RadB. The archaea 95.9 0.02 4.3E-07 55.1 6.7 49 27-76 6-54 (218)
314 PRK05917 DNA polymerase III su 95.9 0.21 4.5E-06 49.5 13.7 113 25-139 5-154 (290)
315 KOG0735 AAA+-type ATPase [Post 95.8 0.07 1.5E-06 57.7 10.8 154 17-178 667-871 (952)
316 COG0714 MoxR-like ATPases [Gen 95.8 0.016 3.4E-07 59.6 5.9 50 16-70 23-72 (329)
317 COG0465 HflB ATP-dependent Zn 95.8 0.034 7.3E-07 60.2 8.4 163 14-179 147-357 (596)
318 PF00560 LRR_1: Leucine Rich R 95.8 0.0026 5.6E-08 35.7 0.0 20 517-536 1-20 (22)
319 TIGR00390 hslU ATP-dependent p 95.8 0.013 2.8E-07 60.4 5.0 53 16-68 11-74 (441)
320 COG0529 CysC Adenylylsulfate k 95.8 0.017 3.6E-07 51.4 5.0 30 40-69 22-51 (197)
321 PRK00889 adenylylsulfate kinas 95.7 0.016 3.4E-07 53.6 5.2 28 40-67 3-30 (175)
322 cd01129 PulE-GspE PulE/GspE Th 95.7 0.041 9E-07 54.3 8.4 39 25-67 68-106 (264)
323 cd00983 recA RecA is a bacter 95.7 0.027 5.9E-07 56.6 7.1 52 27-79 41-93 (325)
324 KOG0651 26S proteasome regulat 95.7 0.014 3.1E-07 56.5 4.7 107 18-124 133-283 (388)
325 COG1703 ArgK Putative periplas 95.7 0.024 5.2E-07 55.0 6.1 43 27-70 38-80 (323)
326 PRK00131 aroK shikimate kinase 95.7 0.0099 2.1E-07 54.9 3.6 25 41-65 4-28 (175)
327 PF06309 Torsin: Torsin; Inte 95.6 0.025 5.5E-07 47.7 5.5 49 17-65 25-77 (127)
328 COG1224 TIP49 DNA helicase TIP 95.6 0.025 5.5E-07 55.9 6.2 60 14-74 36-98 (450)
329 TIGR00235 udk uridine kinase. 95.6 0.013 2.8E-07 55.8 4.3 27 40-66 5-31 (207)
330 PRK09354 recA recombinase A; P 95.6 0.033 7.2E-07 56.5 7.3 53 26-79 45-98 (349)
331 cd00227 CPT Chloramphenicol (C 95.6 0.011 2.4E-07 54.6 3.6 25 42-66 3-27 (175)
332 PF06068 TIP49: TIP49 C-termin 95.5 0.023 5E-07 57.1 5.7 64 14-78 21-87 (398)
333 cd00561 CobA_CobO_BtuR ATP:cor 95.5 0.071 1.5E-06 47.6 8.3 24 42-65 3-26 (159)
334 KOG0739 AAA+-type ATPase [Post 95.5 0.11 2.4E-06 50.1 9.9 159 17-177 133-335 (439)
335 PF08298 AAA_PrkA: PrkA AAA do 95.5 0.028 6.1E-07 56.4 6.2 54 15-68 59-115 (358)
336 TIGR01360 aden_kin_iso1 adenyl 95.5 0.012 2.7E-07 55.0 3.7 26 40-65 2-27 (188)
337 COG4088 Predicted nucleotide k 95.5 0.011 2.4E-07 53.7 3.1 28 42-69 2-29 (261)
338 PRK13947 shikimate kinase; Pro 95.5 0.012 2.5E-07 54.2 3.4 24 43-66 3-26 (171)
339 PRK03846 adenylylsulfate kinas 95.5 0.022 4.7E-07 53.8 5.2 29 40-68 23-51 (198)
340 PRK10820 DNA-binding transcrip 95.5 0.32 6.9E-06 53.3 14.9 50 14-64 201-250 (520)
341 TIGR00064 ftsY signal recognit 95.5 0.038 8.1E-07 54.8 7.0 29 40-68 71-99 (272)
342 PRK13235 nifH nitrogenase redu 95.5 0.017 3.7E-07 57.8 4.6 27 42-68 2-28 (274)
343 cd02028 UMPK_like Uridine mono 95.4 0.018 4E-07 53.2 4.4 25 43-67 1-25 (179)
344 TIGR01359 UMP_CMP_kin_fam UMP- 95.4 0.011 2.3E-07 55.2 2.9 23 43-65 1-23 (183)
345 PF00448 SRP54: SRP54-type pro 95.4 0.021 4.6E-07 53.4 4.9 28 41-68 1-28 (196)
346 KOG2004 Mitochondrial ATP-depe 95.4 0.018 3.9E-07 62.1 4.8 133 17-152 411-596 (906)
347 COG1102 Cmk Cytidylate kinase 95.4 0.013 2.9E-07 51.1 3.1 24 43-66 2-25 (179)
348 PF00158 Sigma54_activat: Sigm 95.4 0.017 3.7E-07 52.6 4.0 45 19-64 1-45 (168)
349 PHA02774 E1; Provisional 95.4 0.055 1.2E-06 58.0 8.1 65 25-94 420-489 (613)
350 PF12775 AAA_7: P-loop contain 95.3 0.051 1.1E-06 53.8 7.5 35 27-65 23-57 (272)
351 PRK10463 hydrogenase nickel in 95.3 0.036 7.8E-07 54.6 6.2 31 39-69 102-132 (290)
352 KOG0737 AAA+-type ATPase [Post 95.3 0.042 9.1E-07 54.8 6.6 156 17-177 92-296 (386)
353 KOG0726 26S proteasome regulat 95.3 0.018 3.9E-07 55.1 3.9 60 10-69 178-247 (440)
354 PF00560 LRR_1: Leucine Rich R 95.3 0.0092 2E-07 33.4 1.2 19 364-382 2-20 (22)
355 PRK05537 bifunctional sulfate 95.3 0.027 5.9E-07 61.9 5.7 52 15-67 367-418 (568)
356 COG0467 RAD55 RecA-superfamily 95.2 0.033 7.2E-07 55.1 5.9 39 40-78 22-60 (260)
357 PRK05201 hslU ATP-dependent pr 95.2 0.029 6.2E-07 58.0 5.4 52 16-67 14-76 (443)
358 cd02021 GntK Gluconate kinase 95.2 0.014 3E-07 52.3 2.9 22 43-64 1-22 (150)
359 PF13245 AAA_19: Part of AAA d 95.2 0.028 6E-07 43.4 4.0 24 41-64 10-33 (76)
360 TIGR01281 DPOR_bchL light-inde 95.2 0.025 5.3E-07 56.4 4.8 26 43-68 2-27 (268)
361 KOG3347 Predicted nucleotide k 95.2 0.017 3.6E-07 49.6 3.0 24 41-64 7-30 (176)
362 PRK12339 2-phosphoglycerate ki 95.2 0.02 4.2E-07 53.7 3.8 25 41-65 3-27 (197)
363 PRK13185 chlL protochlorophyll 95.2 0.027 5.9E-07 56.2 5.1 27 42-68 3-29 (270)
364 PF00625 Guanylate_kin: Guanyl 95.1 0.022 4.8E-07 53.0 4.0 49 41-89 2-54 (183)
365 COG1936 Predicted nucleotide k 95.1 0.017 3.7E-07 51.3 3.0 20 43-62 2-21 (180)
366 TIGR01420 pilT_fam pilus retra 95.1 0.084 1.8E-06 54.5 8.6 35 41-75 122-156 (343)
367 TIGR00554 panK_bact pantothena 95.1 0.037 8E-07 55.0 5.7 28 39-66 60-87 (290)
368 cd02024 NRK1 Nicotinamide ribo 95.1 0.016 3.5E-07 53.5 2.9 23 43-65 1-23 (187)
369 CHL00206 ycf2 Ycf2; Provisiona 95.1 0.054 1.2E-06 65.4 7.8 25 40-64 1629-1653(2281)
370 PRK11388 DNA-binding transcrip 95.1 0.42 9.2E-06 54.1 14.8 49 15-64 323-371 (638)
371 PRK06217 hypothetical protein; 95.1 0.017 3.8E-07 53.7 3.1 23 43-65 3-25 (183)
372 TIGR03878 thermo_KaiC_2 KaiC d 95.1 0.039 8.4E-07 54.4 5.7 38 40-77 35-72 (259)
373 cd02020 CMPK Cytidine monophos 95.1 0.018 4E-07 51.3 3.1 23 43-65 1-23 (147)
374 COG3854 SpoIIIAA ncharacterize 95.1 0.074 1.6E-06 49.5 6.9 79 42-123 138-254 (308)
375 TIGR02322 phosphon_PhnN phosph 95.0 0.02 4.3E-07 53.1 3.4 25 42-66 2-26 (179)
376 cd00071 GMPK Guanosine monopho 95.0 0.016 3.5E-07 50.9 2.6 26 43-68 1-26 (137)
377 cd01124 KaiC KaiC is a circadi 95.0 0.027 5.9E-07 52.6 4.4 34 43-76 1-34 (187)
378 PRK13948 shikimate kinase; Pro 95.0 0.021 4.6E-07 52.7 3.4 27 40-66 9-35 (182)
379 COG1428 Deoxynucleoside kinase 95.0 0.021 4.5E-07 52.6 3.3 26 41-66 4-29 (216)
380 PRK10751 molybdopterin-guanine 95.0 0.027 5.8E-07 51.1 4.0 28 40-67 5-32 (173)
381 PRK13949 shikimate kinase; Pro 95.0 0.02 4.4E-07 52.3 3.2 24 43-66 3-26 (169)
382 PRK14722 flhF flagellar biosyn 95.0 0.083 1.8E-06 54.4 7.9 29 40-68 136-164 (374)
383 PRK09435 membrane ATPase/prote 95.0 0.066 1.4E-06 54.3 7.1 41 27-68 43-83 (332)
384 COG2019 AdkA Archaeal adenylat 95.0 0.029 6.3E-07 49.3 3.8 25 41-65 4-28 (189)
385 PRK05973 replicative DNA helic 94.9 0.037 8E-07 53.1 5.0 39 40-78 63-101 (237)
386 COG0703 AroK Shikimate kinase 94.9 0.022 4.7E-07 51.1 3.1 28 42-69 3-30 (172)
387 cd01393 recA_like RecA is a b 94.9 0.049 1.1E-06 52.7 6.0 40 28-68 7-46 (226)
388 cd00464 SK Shikimate kinase (S 94.9 0.023 5E-07 51.1 3.4 22 44-65 2-23 (154)
389 PRK14737 gmk guanylate kinase; 94.9 0.029 6.4E-07 52.1 4.1 26 40-65 3-28 (186)
390 PRK14974 cell division protein 94.9 0.056 1.2E-06 55.0 6.4 28 40-67 139-166 (336)
391 cd03281 ABC_MSH5_euk MutS5 hom 94.9 0.085 1.8E-06 50.3 7.3 23 41-63 29-51 (213)
392 cd02025 PanK Pantothenate kina 94.9 0.02 4.3E-07 54.9 3.0 24 43-66 1-24 (220)
393 TIGR03877 thermo_KaiC_1 KaiC d 94.9 0.055 1.2E-06 52.7 6.2 50 27-77 8-57 (237)
394 PF13504 LRR_7: Leucine rich r 94.9 0.014 3E-07 30.3 1.0 16 517-532 2-17 (17)
395 COG0003 ArsA Predicted ATPase 94.9 0.038 8.2E-07 55.6 5.1 29 41-69 2-30 (322)
396 cd02023 UMPK Uridine monophosp 94.9 0.02 4.4E-07 54.0 3.1 23 43-65 1-23 (198)
397 TIGR03574 selen_PSTK L-seryl-t 94.9 0.028 6E-07 55.3 4.1 25 43-67 1-25 (249)
398 PRK13975 thymidylate kinase; P 94.9 0.027 5.8E-07 53.2 3.8 26 42-67 3-28 (196)
399 COG4618 ArpD ABC-type protease 94.9 0.045 9.8E-07 56.9 5.6 22 42-63 363-384 (580)
400 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.8 0.073 1.6E-06 47.2 6.3 84 41-127 26-132 (144)
401 PF01078 Mg_chelatase: Magnesi 94.8 0.046 1E-06 50.8 5.1 42 17-63 3-44 (206)
402 PRK12723 flagellar biosynthesi 94.8 0.25 5.5E-06 51.4 11.0 27 40-66 173-199 (388)
403 TIGR02012 tigrfam_recA protein 94.8 0.06 1.3E-06 54.2 6.3 51 27-78 41-92 (321)
404 PRK13946 shikimate kinase; Pro 94.8 0.024 5.2E-07 52.8 3.2 25 41-65 10-34 (184)
405 cd02027 APSK Adenosine 5'-phos 94.8 0.035 7.6E-07 49.6 4.1 24 43-66 1-24 (149)
406 PRK13234 nifH nitrogenase redu 94.8 0.04 8.7E-07 55.5 5.1 36 41-76 4-39 (295)
407 COG0563 Adk Adenylate kinase a 94.8 0.025 5.5E-07 51.9 3.2 22 43-64 2-23 (178)
408 cd01121 Sms Sms (bacterial rad 94.8 0.057 1.2E-06 55.9 6.2 49 27-76 69-117 (372)
409 KOG0727 26S proteasome regulat 94.8 0.049 1.1E-06 51.0 5.0 77 17-95 155-259 (408)
410 PRK13768 GTPase; Provisional 94.8 0.044 9.5E-07 53.8 5.1 28 41-68 2-29 (253)
411 COG3640 CooC CO dehydrogenase 94.7 0.048 1E-06 51.0 4.8 26 43-68 2-27 (255)
412 cd01123 Rad51_DMC1_radA Rad51_ 94.7 0.051 1.1E-06 52.9 5.5 36 29-65 8-43 (235)
413 COG0378 HypB Ni2+-binding GTPa 94.7 0.051 1.1E-06 49.4 4.8 34 41-74 13-46 (202)
414 PRK05342 clpX ATP-dependent pr 94.7 0.042 9.1E-07 57.7 5.0 51 17-67 71-134 (412)
415 COG0194 Gmk Guanylate kinase [ 94.7 0.039 8.4E-07 49.8 4.0 25 41-65 4-28 (191)
416 PRK10416 signal recognition pa 94.7 0.078 1.7E-06 53.7 6.8 28 40-67 113-140 (318)
417 PF03205 MobB: Molybdopterin g 94.7 0.047 1E-06 48.0 4.5 34 42-75 1-35 (140)
418 cd03228 ABCC_MRP_Like The MRP 94.6 0.1 2.2E-06 47.9 7.0 24 41-64 28-51 (171)
419 PRK14530 adenylate kinase; Pro 94.6 0.029 6.3E-07 53.8 3.4 23 43-65 5-27 (215)
420 TIGR00764 lon_rel lon-related 94.6 0.05 1.1E-06 60.4 5.6 63 10-77 11-74 (608)
421 TIGR01313 therm_gnt_kin carboh 94.6 0.023 5.1E-07 51.7 2.5 22 44-65 1-22 (163)
422 KOG0736 Peroxisome assembly fa 94.6 0.2 4.4E-06 54.9 9.7 157 18-177 402-598 (953)
423 TIGR03881 KaiC_arch_4 KaiC dom 94.5 0.082 1.8E-06 51.2 6.4 49 28-77 8-56 (229)
424 PLN02200 adenylate kinase fami 94.5 0.036 7.8E-07 53.6 3.8 26 40-65 42-67 (234)
425 PRK06761 hypothetical protein; 94.5 0.047 1E-06 53.9 4.6 27 42-68 4-30 (282)
426 TIGR02858 spore_III_AA stage I 94.5 0.15 3.2E-06 50.3 8.1 83 40-125 110-232 (270)
427 PRK14738 gmk guanylate kinase; 94.5 0.038 8.2E-07 52.4 3.9 26 39-64 11-36 (206)
428 cd02034 CooC The accessory pro 94.5 0.061 1.3E-06 45.5 4.7 25 44-68 2-26 (116)
429 PRK13765 ATP-dependent proteas 94.5 0.036 7.8E-07 61.3 4.2 63 10-77 24-87 (637)
430 PRK05057 aroK shikimate kinase 94.5 0.033 7.1E-07 51.1 3.3 25 41-65 4-28 (172)
431 PRK00771 signal recognition pa 94.5 0.084 1.8E-06 55.8 6.7 29 40-68 94-122 (437)
432 PRK14527 adenylate kinase; Pro 94.5 0.035 7.5E-07 52.1 3.5 26 40-65 5-30 (191)
433 TIGR01287 nifH nitrogenase iro 94.5 0.045 9.8E-07 54.7 4.5 27 42-68 1-27 (275)
434 cd03115 SRP The signal recogni 94.4 0.059 1.3E-06 49.6 4.9 26 43-68 2-27 (173)
435 PF13306 LRR_5: Leucine rich r 94.4 0.16 3.4E-06 44.0 7.4 104 333-454 7-112 (129)
436 PF03193 DUF258: Protein of un 94.4 0.053 1.1E-06 48.4 4.3 35 23-63 23-57 (161)
437 cd01983 Fer4_NifH The Fer4_Nif 94.4 0.053 1.2E-06 44.1 4.2 25 43-67 1-25 (99)
438 TIGR03263 guanyl_kin guanylate 94.4 0.03 6.5E-07 52.0 2.8 24 42-65 2-25 (180)
439 TIGR00176 mobB molybdopterin-g 94.4 0.054 1.2E-06 48.6 4.3 26 43-68 1-26 (155)
440 TIGR01425 SRP54_euk signal rec 94.4 0.082 1.8E-06 55.3 6.2 29 40-68 99-127 (429)
441 PF13521 AAA_28: AAA domain; P 94.4 0.035 7.7E-07 50.5 3.2 21 44-64 2-22 (163)
442 PF02374 ArsA_ATPase: Anion-tr 94.3 0.046 1E-06 55.1 4.3 27 42-68 2-28 (305)
443 smart00072 GuKc Guanylate kina 94.3 0.036 7.7E-07 51.6 3.2 29 41-69 2-30 (184)
444 PF13306 LRR_5: Leucine rich r 94.3 0.096 2.1E-06 45.3 5.8 59 486-548 53-112 (129)
445 PRK15453 phosphoribulokinase; 94.3 0.066 1.4E-06 52.3 5.1 27 40-66 4-30 (290)
446 TIGR00382 clpX endopeptidase C 94.3 0.059 1.3E-06 56.3 5.1 51 17-67 77-142 (413)
447 PRK13236 nitrogenase reductase 94.3 0.079 1.7E-06 53.5 5.9 48 40-87 5-52 (296)
448 PLN02348 phosphoribulokinase 94.3 0.06 1.3E-06 55.2 4.9 30 39-68 47-76 (395)
449 PRK12678 transcription termina 94.3 0.084 1.8E-06 56.4 6.1 28 40-67 415-442 (672)
450 TIGR00073 hypB hydrogenase acc 94.3 0.073 1.6E-06 50.6 5.3 29 39-67 20-48 (207)
451 TIGR00750 lao LAO/AO transport 94.3 0.1 2.3E-06 52.7 6.7 29 40-68 33-61 (300)
452 TIGR02768 TraA_Ti Ti-type conj 94.3 0.17 3.6E-06 57.9 9.0 78 42-121 369-476 (744)
453 PRK06067 flagellar accessory p 94.2 0.088 1.9E-06 51.2 5.9 49 28-77 13-61 (234)
454 cd04121 Rab40 Rab40 subfamily. 94.2 0.25 5.5E-06 46.1 8.7 23 41-63 6-28 (189)
455 PRK05818 DNA polymerase III su 94.2 3.2 7E-05 40.3 16.2 100 40-139 6-147 (261)
456 PF05621 TniB: Bacterial TniB 94.2 0.064 1.4E-06 52.8 4.8 52 17-68 34-88 (302)
457 PF02367 UPF0079: Uncharacteri 94.2 0.061 1.3E-06 45.7 4.1 26 40-65 14-39 (123)
458 PRK04182 cytidylate kinase; Pr 94.2 0.041 8.8E-07 51.0 3.4 23 43-65 2-24 (180)
459 PRK12338 hypothetical protein; 94.2 0.042 9.2E-07 54.9 3.6 26 40-65 3-28 (319)
460 CHL00072 chlL photochlorophyll 94.2 0.06 1.3E-06 54.1 4.7 25 44-68 3-27 (290)
461 COG3910 Predicted ATPase [Gene 94.2 0.23 4.9E-06 44.8 7.6 24 40-63 36-59 (233)
462 TIGR00416 sms DNA repair prote 94.2 0.096 2.1E-06 56.0 6.4 50 26-76 80-129 (454)
463 PRK03731 aroL shikimate kinase 94.2 0.044 9.5E-07 50.3 3.4 24 42-65 3-26 (171)
464 PF08477 Miro: Miro-like prote 94.2 0.044 9.6E-07 46.7 3.2 21 44-64 2-22 (119)
465 cd01858 NGP_1 NGP-1. Autoanti 94.2 0.07 1.5E-06 48.2 4.7 44 20-63 81-124 (157)
466 PRK14531 adenylate kinase; Pro 94.2 0.047 1E-06 50.8 3.6 24 42-65 3-26 (183)
467 KOG0742 AAA+-type ATPase [Post 94.1 0.11 2.3E-06 52.5 6.1 108 40-152 383-528 (630)
468 PRK13407 bchI magnesium chelat 94.1 0.052 1.1E-06 55.2 4.1 49 13-65 4-53 (334)
469 PF13086 AAA_11: AAA domain; P 94.1 0.087 1.9E-06 51.1 5.7 36 25-65 6-41 (236)
470 PRK00300 gmk guanylate kinase; 94.1 0.042 9.2E-07 52.2 3.3 25 41-65 5-29 (205)
471 PRK13230 nitrogenase reductase 94.1 0.079 1.7E-06 53.1 5.4 37 42-78 2-38 (279)
472 TIGR02173 cyt_kin_arch cytidyl 94.1 0.045 9.7E-07 50.3 3.3 23 43-65 2-24 (171)
473 PRK14493 putative bifunctional 94.1 0.067 1.4E-06 52.9 4.7 28 42-69 2-29 (274)
474 PRK04328 hypothetical protein; 94.1 0.099 2.1E-06 51.3 5.9 49 28-77 11-59 (249)
475 PRK13695 putative NTPase; Prov 94.1 0.084 1.8E-06 48.6 5.1 34 43-76 2-36 (174)
476 TIGR03499 FlhF flagellar biosy 94.1 0.075 1.6E-06 53.1 5.1 28 40-67 193-220 (282)
477 PF00437 T2SE: Type II/IV secr 94.0 0.14 3.1E-06 51.0 7.1 53 15-68 102-154 (270)
478 PTZ00088 adenylate kinase 1; P 94.0 0.046 9.9E-07 52.5 3.4 23 43-65 8-30 (229)
479 PRK14532 adenylate kinase; Pro 94.0 0.042 9.2E-07 51.4 3.1 22 44-65 3-24 (188)
480 PHA02624 large T antigen; Prov 94.0 0.098 2.1E-06 56.4 5.9 65 25-93 416-487 (647)
481 PRK15115 response regulator Gl 94.0 0.75 1.6E-05 49.6 13.0 47 17-64 134-180 (444)
482 COG1072 CoaA Panthothenate kin 94.0 0.099 2.2E-06 50.3 5.3 45 27-71 68-112 (283)
483 cd01428 ADK Adenylate kinase ( 93.9 0.047 1E-06 51.3 3.3 21 44-64 2-22 (194)
484 PRK11608 pspF phage shock prot 93.9 0.058 1.3E-06 55.2 4.1 47 16-63 5-51 (326)
485 COG1124 DppF ABC-type dipeptid 93.9 0.053 1.2E-06 51.1 3.4 27 41-67 33-59 (252)
486 PRK05703 flhF flagellar biosyn 93.9 0.12 2.5E-06 54.8 6.4 26 41-66 221-246 (424)
487 cd00820 PEPCK_HprK Phosphoenol 93.9 0.06 1.3E-06 44.3 3.3 22 41-62 15-36 (107)
488 TIGR02782 TrbB_P P-type conjug 93.9 0.24 5.1E-06 49.9 8.3 27 42-68 133-159 (299)
489 PF03029 ATP_bind_1: Conserved 93.9 0.059 1.3E-06 52.2 3.8 23 46-68 1-23 (238)
490 cd03243 ABC_MutS_homologs The 93.9 0.14 3E-06 48.5 6.3 22 42-63 30-51 (202)
491 COG0237 CoaE Dephospho-CoA kin 93.8 0.057 1.2E-06 50.5 3.5 23 41-63 2-24 (201)
492 PLN02318 phosphoribulokinase/u 93.8 0.081 1.8E-06 57.0 5.0 27 39-65 63-89 (656)
493 PRK10078 ribose 1,5-bisphospho 93.8 0.048 1E-06 50.9 3.0 23 42-64 3-25 (186)
494 cd03114 ArgK-like The function 93.8 0.087 1.9E-06 46.9 4.5 26 43-68 1-26 (148)
495 cd03116 MobB Molybdenum is an 93.8 0.099 2.1E-06 47.0 4.9 27 42-68 2-28 (159)
496 TIGR00455 apsK adenylylsulfate 93.8 0.094 2E-06 48.8 5.0 28 40-67 17-44 (184)
497 PRK11823 DNA repair protein Ra 93.8 0.12 2.7E-06 55.1 6.5 50 26-76 66-115 (446)
498 cd01135 V_A-ATPase_B V/A-type 93.8 0.13 2.7E-06 50.3 5.8 27 40-66 68-94 (276)
499 COG1121 ZnuC ABC-type Mn/Zn tr 93.8 0.12 2.6E-06 49.7 5.6 23 41-63 30-52 (254)
500 KOG1942 DNA helicase, TBP-inte 93.8 0.11 2.4E-06 49.9 5.3 61 14-75 35-98 (456)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=9.1e-73 Score=664.61 Aligned_cols=624 Identities=31% Similarity=0.509 Sum_probs=435.0
Q ss_pred ChhHHHhcC-CCCccCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEcc-
Q 037483 1 MVKAISSKI-PVKSETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDE- 78 (693)
Q Consensus 1 ~~~~~~~~l-~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~- 78 (693)
||++|++++ .+++...+++|||++++++|.+++..+.+ ++++|+||||||+||||||+++|+++..+|++.+|+...
T Consensus 167 Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~-~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~ 245 (1153)
T PLN03210 167 IANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESE-EVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAF 245 (1153)
T ss_pred HHHHHHHhhccccCcccccccchHHHHHHHHHHHccccC-ceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccc
Confidence 799999999 77788889999999999999999876544 799999999999999999999999999999998887420
Q ss_pred ---------------c------------------------------CCCCCeEEEEEecCCChhhhhHHhcCCCcCCCCc
Q 037483 79 ---------------V------------------------------GCNTKKVLLVIDDVVDIKQLEYLVGKREWFGSGS 113 (693)
Q Consensus 79 ---------------~------------------------------~~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~~~ 113 (693)
. .+.++|+|+||||||+.++|+.+.....|+++|+
T Consensus 246 v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~Gs 325 (1153)
T PLN03210 246 ISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGS 325 (1153)
T ss_pred cccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCc
Confidence 0 1356899999999999999999998888889999
Q ss_pred eEEEEeCChHHHHHcCCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHHhhhhcCCChH
Q 037483 114 RIIITSRDEHLLKTHGVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVLGSFLNGRSTD 193 (693)
Q Consensus 114 ~iliTtR~~~~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~ 193 (693)
+||||||++.++...+.+++|+++.+++++|++||+++||+...+.++..+++++|+++|+|+|||++++|++|++++..
T Consensus 326 rIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~ 405 (1153)
T PLN03210 326 RIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKE 405 (1153)
T ss_pred EEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHH
Confidence 99999999999988778889999999999999999999998877777889999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCchHHHHHHHhhccCcH-hhHhHHhhhhcccCCCCHHHHHHHHHHcCCCccchhhhhhcCCcEEEeC
Q 037483 194 QWRSTLERLKRDPPNKIMSILQISFDGLQD-SEKKIFLDVACFFKWKSREYVTKILEACGFSPVIGIEVLIEKSLLIVDE 272 (693)
Q Consensus 194 ~w~~~l~~l~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sLi~~~~ 272 (693)
+|+.++++++...+..+..+++.||++|++ .+|.||+++||||.+...+.+..+++.+++.+..+++.|++++||+..
T Consensus 406 ~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~- 484 (1153)
T PLN03210 406 DWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVR- 484 (1153)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEc-
Confidence 999999999988888999999999999986 589999999999999999999999998999888999999999999887
Q ss_pred CCcEehhHHHHHHHHHHhhccCcCCCCccccccChhhHHHHHhhCccc----------------------cccCcCcccc
Q 037483 273 DNRLQMHDLLQELGHQIVQRQSSEEPGKRSRILKKEEVRQVLIENALT----------------------LKGCKNLSSL 330 (693)
Q Consensus 273 ~~~~~~H~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------l~~~~~L~~l 330 (693)
.+++.|||++|+||++++++++ .++++++++|++++++.++..++++ |.+|.+|+.+
T Consensus 485 ~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L 563 (1153)
T PLN03210 485 EDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFL 563 (1153)
T ss_pred CCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEE
Confidence 6789999999999999999987 7899999999999999999877653 3445444332
Q ss_pred cc---------------------------------------------------------------ccCCCCCCcEEEcCC
Q 037483 331 LI---------------------------------------------------------------SLSSLKCLRTLELSG 347 (693)
Q Consensus 331 ~~---------------------------------------------------------------~l~~l~~L~~L~l~~ 347 (693)
.. .+..+++|+.|+|++
T Consensus 564 ~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~ 643 (1153)
T PLN03210 564 KFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRG 643 (1153)
T ss_pred EEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCC
Confidence 11 122334444445544
Q ss_pred CCCcccchhhhcCccccceeccCCc-CceeecCCcCCCCCCCEEecCCCCCCccCCCCC----------CCCcccccccc
Q 037483 348 CSKLKRFLEIVASMEDLSELYLDGT-FITKLPLSIELLTGLELLNLNDCKNLLRLPSSI----------DGCFKLENVSE 416 (693)
Q Consensus 348 ~~~~~~~~~~~~~l~~L~~L~L~~~-~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~----------~~~~~L~~lp~ 416 (693)
|...+.+|+ ++.+++|+.|+|++| .+..+|..+.++++|+.|++++|..++.+|..+ .+|..++.+|.
T Consensus 644 ~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~ 722 (1153)
T PLN03210 644 SKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPD 722 (1153)
T ss_pred CCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcccccc
Confidence 444444442 444555555555554 344555555566666666666665555555432 23333333332
Q ss_pred cccCCCCccEEecCCCccccCCCccccC-------------------------------CCCCEEEccCCCCCCCCCCcc
Q 037483 417 TLGQVEILEELDISGTTIREPPSSIFAI-------------------------------KNLKKLSFSGCSGPPSSASWH 465 (693)
Q Consensus 417 ~l~~l~~L~~L~l~~n~i~~lp~~~~~l-------------------------------~~L~~L~l~~~~~~~~~~~~~ 465 (693)
. ..+|++|++++|.+..+|..+ .+ ++|+.|++++|......|...
T Consensus 723 ~---~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si 798 (1153)
T PLN03210 723 I---STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSI 798 (1153)
T ss_pred c---cCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhh
Confidence 1 223444455555444444322 11 233333333333222221110
Q ss_pred cccc--ccccCCCCchhhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCccccCCCCCCE
Q 037483 466 LHFP--FNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPASISGLLNLKE 543 (693)
Q Consensus 466 ~~~~--~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~ 543 (693)
.... ..+.-..+.....++..+ ++++|+.|++++|.. ...+|. ..++|++|+|++|.++.+|.++..+++|+.
T Consensus 799 ~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~-L~~~p~---~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~ 873 (1153)
T PLN03210 799 QNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSR-LRTFPD---ISTNISDLNLSRTGIEEVPWWIEKFSNLSF 873 (1153)
T ss_pred hCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCc-cccccc---cccccCEeECCCCCCccChHHHhcCCCCCE
Confidence 0000 000000000000011111 334444444444432 112222 124556666666666666666666666666
Q ss_pred Eecccccc---------------eeeccCcccccccCCch----------------------hhhcchhhhHHHHHHHHH
Q 037483 544 LELEDCAL---------------KLRKSDCTIIKCIDSLK----------------------LLVNNGLAISMLQEYLEA 586 (693)
Q Consensus 544 L~L~~n~~---------------~~~~~~~~~l~~l~~l~----------------------~~~n~~~~~~~~~~~~~~ 586 (693)
|+|++|+. .+...+|.+|..++... .+.||+++.... +++
T Consensus 874 L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a--~l~- 950 (1153)
T PLN03210 874 LDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEA--LLQ- 950 (1153)
T ss_pred EECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCchh--hhc-
Confidence 66666543 12223344333221100 133454433211 111
Q ss_pred hcCCCCCceeEEeeCCCCCCCCccccCCCceEE-EEcCCCCccCCCccceeEEEEeecCC
Q 037483 587 MSLSPPRQEFKIVVPGSEIPKWFMYQNEGSSIT-VTTPSYLYNKNKVVGYAICCVFHVSK 645 (693)
Q Consensus 587 ~~~~~~~~~~~~~~~g~~~P~w~~~~~~~~~i~-~~lp~~~~~~~~~~~~~~~~v~~~~~ 645 (693)
.......+.+||.++|.||.|+..|++++ +++|+.+. ...++||++|+|+....
T Consensus 951 ----~~~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~-~~~~~~f~~c~v~~~~~ 1005 (1153)
T PLN03210 951 ----QQSIFKQLILSGEEVPSYFTHRTTGASLTNIPLLHISP-CQPFFRFRACAVVDSES 1005 (1153)
T ss_pred ----ccccceEEECCCccCchhccCCcccceeeeeccCCccc-CCCccceEEEEEEecCc
Confidence 11223457889999999999999999998 99988776 56799999999997653
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=8.7e-54 Score=476.83 Aligned_cols=415 Identities=29% Similarity=0.406 Sum_probs=298.1
Q ss_pred cccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHH---HhcccceeEEEEccc-----------------
Q 037483 20 VRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDL---ISHEFEGSSFLVDEV----------------- 79 (693)
Q Consensus 20 vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~---~~~~f~~~~~~~~~~----------------- 79 (693)
||.+..++++.+.|..+. .++|+|+||||+||||||++++++ ++.+|+.++|+.+..
T Consensus 161 VG~e~~~~kl~~~L~~d~---~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~ 237 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDD---VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGL 237 (889)
T ss_pred ccHHHHHHHHHHHhccCC---CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhcc
Confidence 999999999999998653 389999999999999999999983 789999999998843
Q ss_pred -------------------CCCCCeEEEEEecCCChhhhhHHhcCCCcCCCCceEEEEeCChHHHHH-cCCCceeeCCCC
Q 037483 80 -------------------GCNTKKVLLVIDDVVDIKQLEYLVGKREWFGSGSRIIITSRDEHLLKT-HGVDELCEPNGL 139 (693)
Q Consensus 80 -------------------~~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~iliTtR~~~~~~~-~~~~~~~~l~~L 139 (693)
-+.++|+++|+||||+..+|+.+..+++....||+|++|||++.|+.. +++...++++.|
T Consensus 238 ~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L 317 (889)
T KOG4658|consen 238 LDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECL 317 (889)
T ss_pred CCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcccccccc
Confidence 177899999999999999999999998888889999999999999998 788889999999
Q ss_pred CHHHHHHHHHHhcccCC-CCchHHHHHHHHHHHHhCCCchhHHHHhhhhcCC-ChHHHHHHHHHhccC-------CCchH
Q 037483 140 NYDEALQLLNTKAFKTH-KPLEECAKLSERVPQYAGGLPLALKVLGSFLNGR-STDQWRSTLERLKRD-------PPNKI 210 (693)
Q Consensus 140 ~~~ea~~l~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~-~~~~w~~~l~~l~~~-------~~~~~ 210 (693)
+.+|||+||.+.+|... ...+...+++++++++|+|+|||+.++|..++.+ +..+|+++...+... ..+.+
T Consensus 318 ~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i 397 (889)
T KOG4658|consen 318 TPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESI 397 (889)
T ss_pred CccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhh
Confidence 99999999999998763 3345588999999999999999999999999965 667999999988654 13578
Q ss_pred HHHHHHhhccCcHhhHhHHhhhhcccCCC--CHHHHHHHHHHcCCCc------------cchhhhhhcCCcEEEeCC---
Q 037483 211 MSILQISFDGLQDSEKKIFLDVACFFKWK--SREYVTKILEACGFSP------------VIGIEVLIEKSLLIVDED--- 273 (693)
Q Consensus 211 ~~~l~~s~~~L~~~~~~~~~~la~f~~~~--~~~~l~~~~~~~~~~~------------~~~l~~L~~~sLi~~~~~--- 273 (693)
..++.+||+.|+++.|.||+|||.||+++ ..+.+...|.++|+.. ...+++|++++|+.....
T Consensus 398 ~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~ 477 (889)
T KOG4658|consen 398 LPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGR 477 (889)
T ss_pred HHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccc
Confidence 89999999999999999999999999987 7889999999999653 234899999999987642
Q ss_pred -CcEehhHHHHHHHHHHhhccCcCCCCcccc----ccChhhHHHHHhhCccccccC-cCccccccccCCCCCCcEEEcCC
Q 037483 274 -NRLQMHDLLQELGHQIVQRQSSEEPGKRSR----ILKKEEVRQVLIENALTLKGC-KNLSSLLISLSSLKCLRTLELSG 347 (693)
Q Consensus 274 -~~~~~H~lv~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~-~~L~~l~~~l~~l~~L~~L~l~~ 347 (693)
.++.|||+||++|.+++.+........... +....++...-.... ...+ .....++ .-..++.|++|-+.+
T Consensus 478 ~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr--~s~~~~~~~~~~-~~~~~~~L~tLll~~ 554 (889)
T KOG4658|consen 478 KETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRR--MSLMNNKIEHIA-GSSENPKLRTLLLQR 554 (889)
T ss_pred eeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeE--EEEeccchhhcc-CCCCCCccceEEEee
Confidence 579999999999999998544322211100 000111111000000 0000 1111111 112233455555555
Q ss_pred CC--CcccchhhhcCccccceeccCCc-CceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCcccccccccccCCCCc
Q 037483 348 CS--KLKRFLEIVASMEDLSELYLDGT-FITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLENVSETLGQVEIL 424 (693)
Q Consensus 348 ~~--~~~~~~~~~~~l~~L~~L~L~~~-~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~lp~~l~~l~~L 424 (693)
|. ........|..++.|++|||++| .+.++|.+++.+-+|++|+++++ .+..+|..++++.+|
T Consensus 555 n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t--------------~I~~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 555 NSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT--------------GISHLPSGLGNLKKL 620 (889)
T ss_pred cchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC--------------CccccchHHHHHHhh
Confidence 43 22222333555555555555544 34455555555555555555553 344455555555555
Q ss_pred cEEecCCCccccC-CCccccCCCCCEEEccC
Q 037483 425 EELDISGTTIREP-PSSIFAIKNLKKLSFSG 454 (693)
Q Consensus 425 ~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~ 454 (693)
.+|++..+..... |.....+++|++|.+..
T Consensus 621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 621 IYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred heeccccccccccccchhhhcccccEEEeec
Confidence 5555555533222 23333355555555543
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.7e-35 Score=299.75 Aligned_cols=234 Identities=33% Similarity=0.540 Sum_probs=186.8
Q ss_pred cchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHH--HhcccceeEEEEccc--------------------
Q 037483 22 IDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDL--ISHEFEGSSFLVDEV-------------------- 79 (693)
Q Consensus 22 r~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~--~~~~f~~~~~~~~~~-------------------- 79 (693)
||.++++|.+.|.... ++.++|+|+||||+||||||.+++++ ++.+|+.++|+....
T Consensus 1 re~~~~~l~~~L~~~~-~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS-NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTT-TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCC-CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccccc
Confidence 7899999999998855 47999999999999999999999987 899999999987632
Q ss_pred -----------------CCCCCeEEEEEecCCChhhhhHHhcCCCcCCCCceEEEEeCChHHHHHcCC-CceeeCCCCCH
Q 037483 80 -----------------GCNTKKVLLVIDDVVDIKQLEYLVGKREWFGSGSRIIITSRDEHLLKTHGV-DELCEPNGLNY 141 (693)
Q Consensus 80 -----------------~~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~iliTtR~~~~~~~~~~-~~~~~l~~L~~ 141 (693)
.+.++++|+||||||+...|+.+...+.....|++||||||+..++..... ...+++++|+.
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred ccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 035679999999999999998888777666789999999999987765544 67899999999
Q ss_pred HHHHHHHHHhcccCC-CCchHHHHHHHHHHHHhCCCchhHHHHhhhhcC-CChHHHHHHHHHhccCC------CchHHHH
Q 037483 142 DEALQLLNTKAFKTH-KPLEECAKLSERVPQYAGGLPLALKVLGSFLNG-RSTDQWRSTLERLKRDP------PNKIMSI 213 (693)
Q Consensus 142 ~ea~~l~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~-~~~~~w~~~l~~l~~~~------~~~~~~~ 213 (693)
+||++||.+.++... .......+.+++|+++|+|+||||+++|++++. .+..+|.+.++++.... ...+..+
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 239 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSA 239 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999997655 233444567899999999999999999999953 26678999988766533 4679999
Q ss_pred HHHhhccCcHhhHhHHhhhhcccCCC--CHHHHHHHHHHcCCCcc
Q 037483 214 LQISFDGLQDSEKKIFLDVACFFKWK--SREYVTKILEACGFSPV 256 (693)
Q Consensus 214 l~~s~~~L~~~~~~~~~~la~f~~~~--~~~~l~~~~~~~~~~~~ 256 (693)
+..||+.|+++.|+||.+||+||.+. +.+.+.++|.++|+...
T Consensus 240 l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 240 LELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 99999999999999999999999986 69999999999887653
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.82 E-value=8e-20 Score=216.60 Aligned_cols=214 Identities=26% Similarity=0.302 Sum_probs=128.8
Q ss_pred CCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCce-eecCCcCCCCCCCEEecCCCCCCccCCCCCCCCcccc-
Q 037483 335 SSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFIT-KLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLE- 412 (693)
Q Consensus 335 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~- 412 (693)
..+++|++|++++|.+.+.+|..++++++|++|++++|.+. .+|..+.++++|++|++++|.+.+.+|..+.++.+|+
T Consensus 137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 34667777777777666666666777777777777777665 5666667777777777777776666666665555554
Q ss_pred ----------cccccccCCCCccEEecCCCccc-cCCCccccCCCCCEEEccCCCCCCCCCCcccc----ccccccCCCC
Q 037483 413 ----------NVSETLGQVEILEELDISGTTIR-EPPSSIFAIKNLKKLSFSGCSGPPSSASWHLH----FPFNLMGKSL 477 (693)
Q Consensus 413 ----------~lp~~l~~l~~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~----~~~~~~~~~~ 477 (693)
.+|..++++++|++|++++|.+. .+|..+.++++|++|++++|.+....+..... ..+.+....+
T Consensus 217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 296 (968)
T PLN00113 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296 (968)
T ss_pred EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence 23556677777777777777766 34667777777777777777665443321000 0000000000
Q ss_pred chhhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCc-ccCccccCCCCCCEEecccccc
Q 037483 478 YPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFV-TLPASISGLLNLKELELEDCAL 551 (693)
Q Consensus 478 ~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~~ 551 (693)
....+..+.++++|+.|++++|.+ .+.+|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++
T Consensus 297 --~~~~p~~~~~l~~L~~L~l~~n~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l 368 (968)
T PLN00113 297 --SGEIPELVIQLQNLEILHLFSNNF-TGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL 368 (968)
T ss_pred --ccCCChhHcCCCCCcEEECCCCcc-CCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCee
Confidence 001112445566666666666666 3455666666666666666666665 5566666666666666666665
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.82 E-value=5.7e-20 Score=217.82 Aligned_cols=233 Identities=24% Similarity=0.274 Sum_probs=168.9
Q ss_pred CCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCce-eecCCcCCCCCCCEEecCCCCCCccCCCCCCCCccccc
Q 037483 335 SSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFIT-KLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLEN 413 (693)
Q Consensus 335 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~ 413 (693)
..+++|++|++++|.+.+.+|. +.+++|++|+|++|.++ .+|..++.+++|++|++++|.+.+.+|..+.++++|+.
T Consensus 115 ~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 192 (968)
T PLN00113 115 TTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF 192 (968)
T ss_pred ccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCe
Confidence 3889999999999988877774 46899999999999997 77888999999999999999999999998887777764
Q ss_pred -----------ccccccCCCCccEEecCCCccc-cCCCccccCCCCCEEEccCCCCCCCCCCccccc----cccccCCCC
Q 037483 414 -----------VSETLGQVEILEELDISGTTIR-EPPSSIFAIKNLKKLSFSGCSGPPSSASWHLHF----PFNLMGKSL 477 (693)
Q Consensus 414 -----------lp~~l~~l~~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~----~~~~~~~~~ 477 (693)
+|..++++++|++|++++|.+. .+|..+.++++|++|++++|.+....+...... .+.+....+
T Consensus 193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 272 (968)
T PLN00113 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL 272 (968)
T ss_pred eeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCee
Confidence 4778899999999999999998 568899999999999999998765544311000 000000000
Q ss_pred chhhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCc-ccCccccCCCCCCEEecccccceee-c
Q 037483 478 YPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFV-TLPASISGLLNLKELELEDCALKLR-K 555 (693)
Q Consensus 478 ~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~-~ 555 (693)
....+..+.++++|+.|++++|.+ .+.+|..+.++++|+.|++++|.++ .+|..+..+++|+.|++++|.+... .
T Consensus 273 --~~~~p~~l~~l~~L~~L~Ls~n~l-~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p 349 (968)
T PLN00113 273 --SGPIPPSIFSLQKLISLDLSDNSL-SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP 349 (968)
T ss_pred --eccCchhHhhccCcCEEECcCCee-ccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCC
Confidence 011222556667777777777776 4556666777777777777777776 5666677777777777777776322 2
Q ss_pred cCcccccccCCchhhhc
Q 037483 556 SDCTIIKCIDSLKLLVN 572 (693)
Q Consensus 556 ~~~~~l~~l~~l~~~~n 572 (693)
.....+.+|..+++..|
T Consensus 350 ~~l~~~~~L~~L~Ls~n 366 (968)
T PLN00113 350 KNLGKHNNLTVLDLSTN 366 (968)
T ss_pred hHHhCCCCCcEEECCCC
Confidence 22334455555555544
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.81 E-value=5e-21 Score=193.04 Aligned_cols=270 Identities=25% Similarity=0.228 Sum_probs=164.5
Q ss_pred cCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceee-cCCcCCCCCCCEEecCCCCCCccCCCCCCCCcccc
Q 037483 334 LSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKL-PLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLE 412 (693)
Q Consensus 334 l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~ 412 (693)
|.++.+|.+|.|+.|.+....+..|.++++|+.|+|..|.|..+ ...|..+++|+.|.|..|....--...|.+|.+++
T Consensus 193 F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme 272 (873)
T KOG4194|consen 193 FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKME 272 (873)
T ss_pred ccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccc
Confidence 44455555555555554444444555555555555555555533 23345555555555555554444444455555554
Q ss_pred ccc-----------ccccCCCCccEEecCCCccccC-CCccccCCCCCEEEccCCCCCCCCCCccc----cccccccCCC
Q 037483 413 NVS-----------ETLGQVEILEELDISGTTIREP-PSSIFAIKNLKKLSFSGCSGPPSSASWHL----HFPFNLMGKS 476 (693)
Q Consensus 413 ~lp-----------~~l~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~----~~~~~~~~~~ 476 (693)
.+. .++-+|++|+.|++|+|.|..+ +++...+++|+.|+|++|.+....+.... ...+++...+
T Consensus 273 ~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns 352 (873)
T KOG4194|consen 273 HLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS 352 (873)
T ss_pred eeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc
Confidence 432 3445666677777777777665 55666666777777777766655443210 0111222221
Q ss_pred CchhhhhhcccCCCCcCCeeeCCCCCCCCCCC---CccCCCCCCCCEEeCCCCCCcccC-ccccCCCCCCEEecccccc-
Q 037483 477 LYPVALMLFSLSGLCSLSKLDLSYCGLGEGAI---PNDIGNLCSLKELYLSKNNFVTLP-ASISGLLNLKELELEDCAL- 551 (693)
Q Consensus 477 ~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~---p~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~n~~- 551 (693)
+.. .....|.++++|+.|||++|.++ +.+ ...|..|++|+.|++.+|++..+| ..+.++.+|+.|+|.+|.+
T Consensus 353 i~~--l~e~af~~lssL~~LdLr~N~ls-~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 353 IDH--LAEGAFVGLSSLHKLDLRSNELS-WCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIA 429 (873)
T ss_pred hHH--HHhhHHHHhhhhhhhcCcCCeEE-EEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcce
Confidence 111 11226788899999999999873 333 334778999999999999999999 6789999999999999998
Q ss_pred eeeccCcccccccCCchh---hhcchhhhHHHHHHHHHhcCCCCCceeEEeeCCCCCCCCccccC
Q 037483 552 KLRKSDCTIIKCIDSLKL---LVNNGLAISMLQEYLEAMSLSPPRQEFKIVVPGSEIPKWFMYQN 613 (693)
Q Consensus 552 ~~~~~~~~~l~~l~~l~~---~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~P~w~~~~~ 613 (693)
++....+..+ .|+.|.+ .--|.+...|+..|+-...+. ..+.--+..|+|+..|.
T Consensus 430 SIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq------~sv~a~CayPe~Lad~~ 487 (873)
T KOG4194|consen 430 SIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWLYRRKLQ------SSVIAKCAYPEPLADQS 487 (873)
T ss_pred eecccccccc-hhhhhhhcccceEEeccHHHHHHHHHhcccc------cceeeeccCCcccccce
Confidence 4444444444 5555533 345888888888888543221 11222356888887765
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.81 E-value=7.4e-22 Score=200.19 Aligned_cols=245 Identities=22% Similarity=0.287 Sum_probs=194.6
Q ss_pred cCccccccccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCc----c
Q 037483 325 KNLSSLLISLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLL----R 400 (693)
Q Consensus 325 ~~L~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~----~ 400 (693)
.+|++.|..+.+-+++-+|+||+|++.+.....+-++..|-+|+|++|.+..+|+.+..+.+|++|.|++|.+.. .
T Consensus 113 NqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ 192 (1255)
T KOG0444|consen 113 NQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQ 192 (1255)
T ss_pred hhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhc
Confidence 367888888888899999999998866555566789999999999999999999999999999999999997643 4
Q ss_pred CCCCC--------CCCcccccccccccCCCCccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCC---cccccc
Q 037483 401 LPSSI--------DGCFKLENVSETLGQVEILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSAS---WHLHFP 469 (693)
Q Consensus 401 lp~~~--------~~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~~~ 469 (693)
+|+-- +.-..+..+|.++..|.+|..+|+|.|++..+|+.+.++.+|+.|+|++|+++..... |.....
T Consensus 193 LPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEt 272 (1255)
T KOG0444|consen 193 LPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLET 272 (1255)
T ss_pred CccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhh
Confidence 45311 0111234678999999999999999999999999999999999999999998765321 221122
Q ss_pred ccccCCCCchhhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCccccCCCCCCEEecccc
Q 037483 470 FNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPASISGLLNLKELELEDC 549 (693)
Q Consensus 470 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n 549 (693)
+++.. ..+..++..+.+++.|+.|.+.+|.++-+.+|..++++.+|+.+..++|.+.-+|+++..|..|+.|.|++|
T Consensus 273 LNlSr---NQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~N 349 (1255)
T KOG0444|consen 273 LNLSR---NQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHN 349 (1255)
T ss_pred hcccc---chhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccccc
Confidence 22222 234455668888899999999999887788999999999999999999999989999999999999999999
Q ss_pred cceeeccCcccccccCCchhhhc
Q 037483 550 ALKLRKSDCTIIKCIDSLKLLVN 572 (693)
Q Consensus 550 ~~~~~~~~~~~l~~l~~l~~~~n 572 (693)
++...+.....|+.|..|++..|
T Consensus 350 rLiTLPeaIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 350 RLITLPEAIHLLPDLKVLDLREN 372 (1255)
T ss_pred ceeechhhhhhcCCcceeeccCC
Confidence 88555666667777777766555
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.74 E-value=9.8e-20 Score=184.94 Aligned_cols=225 Identities=22% Similarity=0.222 Sum_probs=146.2
Q ss_pred CccccccccCCCCCCcEEEcCCCCCc-ccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCC
Q 037483 326 NLSSLLISLSSLKCLRTLELSGCSKL-KRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSS 404 (693)
Q Consensus 326 ~L~~l~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~ 404 (693)
+|.++...++.+|.|+.+.+..|+.. ..+|..+..+..|..|+|++|+++++|..+..-+++-+|+|++|
T Consensus 66 ~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N--------- 136 (1255)
T KOG0444|consen 66 QLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYN--------- 136 (1255)
T ss_pred hhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccC---------
Confidence 45566667888999999999987753 34777788899999999999999999999999999999999998
Q ss_pred CCCCccccccccc-ccCCCCccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCC----CCccccccccccCCCCch
Q 037483 405 IDGCFKLENVSET-LGQVEILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSS----ASWHLHFPFNLMGKSLYP 479 (693)
Q Consensus 405 ~~~~~~L~~lp~~-l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 479 (693)
+++.+|.. +-+++.|-.||||+|.+..+|+.+..+.+|++|.|++|.+.... |.......+.+. +....
T Consensus 137 -----~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms-~TqRT 210 (1255)
T KOG0444|consen 137 -----NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMS-NTQRT 210 (1255)
T ss_pred -----ccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcc-cccch
Confidence 34444433 45788888999999999999999999999999999998654321 100000000000 00001
Q ss_pred hhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCccccCCCCCCEEecccccceeeccCcc
Q 037483 480 VALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPASISGLLNLKELELEDCALKLRKSDCT 559 (693)
Q Consensus 480 ~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~ 559 (693)
...++.++..+.+|..+|+|.|.+. .+|+.+-++++|+.|+||+|.|+.+.-......+|++|+++.|.++..+...-
T Consensus 211 l~N~Ptsld~l~NL~dvDlS~N~Lp--~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avc 288 (1255)
T KOG0444|consen 211 LDNIPTSLDDLHNLRDVDLSENNLP--IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVC 288 (1255)
T ss_pred hhcCCCchhhhhhhhhccccccCCC--cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHh
Confidence 1112224555556666666666653 25666666666666666666666555555555566666666666543333333
Q ss_pred cccccCCc
Q 037483 560 IIKCIDSL 567 (693)
Q Consensus 560 ~l~~l~~l 567 (693)
.|..|..|
T Consensus 289 KL~kL~kL 296 (1255)
T KOG0444|consen 289 KLTKLTKL 296 (1255)
T ss_pred hhHHHHHH
Confidence 44444444
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.72 E-value=9.6e-19 Score=176.72 Aligned_cols=220 Identities=23% Similarity=0.235 Sum_probs=158.2
Q ss_pred ccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCC-cCCCCCCCEEecCCCCCCccCCCCCCCCccc
Q 037483 333 SLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLS-IELLTGLELLNLNDCKNLLRLPSSIDGCFKL 411 (693)
Q Consensus 333 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L 411 (693)
++..-.++++|+|++|.+...-...|.++.+|..|.|+.|.++.+|.. |.++++|+.|+|..|.+-..--..|.++.+|
T Consensus 168 sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl 247 (873)
T KOG4194|consen 168 SFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSL 247 (873)
T ss_pred CCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhh
Confidence 455557899999999988777677889999999999999999999875 5669999999999997544334455666666
Q ss_pred cccc-----------ccccCCCCccEEecCCCccccC-CCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCch
Q 037483 412 ENVS-----------ETLGQVEILEELDISGTTIREP-PSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYP 479 (693)
Q Consensus 412 ~~lp-----------~~l~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (693)
+.+. ..|-.|.++++|+|..|++..+ -.++.++++|+.|++++|.+......
T Consensus 248 ~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d---------------- 311 (873)
T KOG4194|consen 248 QNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID---------------- 311 (873)
T ss_pred hhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecc----------------
Confidence 6442 4567789999999999999988 56789999999999999988765432
Q ss_pred hhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCc-cccCCCCCCEEeccccccee----e
Q 037483 480 VALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPA-SISGLLNLKELELEDCALKL----R 554 (693)
Q Consensus 480 ~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n~~~~----~ 554 (693)
+...+++|+.|+|++|+|+. --+..|..+..|++|+|++|.++.+.+ .+..+++|++|||++|.+.. -
T Consensus 312 ------~WsftqkL~~LdLs~N~i~~-l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDa 384 (873)
T KOG4194|consen 312 ------SWSFTQKLKELDLSSNRITR-LDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDA 384 (873)
T ss_pred ------hhhhcccceeEecccccccc-CChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecc
Confidence 45566777777777777732 223456666677777777777666553 34556666666666666621 1
Q ss_pred ccCcccccccCCchhhhcchh
Q 037483 555 KSDCTIIKCIDSLKLLVNNGL 575 (693)
Q Consensus 555 ~~~~~~l~~l~~l~~~~n~~~ 575 (693)
+..+..|.+|..|.+.+|..+
T Consensus 385 a~~f~gl~~LrkL~l~gNqlk 405 (873)
T KOG4194|consen 385 AVAFNGLPSLRKLRLTGNQLK 405 (873)
T ss_pred hhhhccchhhhheeecCceee
Confidence 222334555555555555444
No 10
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=2.2e-19 Score=153.58 Aligned_cols=162 Identities=26% Similarity=0.384 Sum_probs=89.2
Q ss_pred CCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCcccccc
Q 037483 335 SSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLENV 414 (693)
Q Consensus 335 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~l 414 (693)
-++.+.+.|.|++|. ....|..+..+.+|+.|++.+|+|+++|.++..+++|+.|+++-| .|..+
T Consensus 30 f~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn--------------rl~~l 94 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN--------------RLNIL 94 (264)
T ss_pred cchhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh--------------hhhcC
Confidence 345555666666644 334444556666666666666666666666666666666666554 34445
Q ss_pred cccccCCCCccEEecCCCccc--cCCCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCc
Q 037483 415 SETLGQVEILEELDISGTTIR--EPPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCS 492 (693)
Q Consensus 415 p~~l~~l~~L~~L~l~~n~i~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 492 (693)
|..||.++.|+.||+.+|++. .+|..+..++.|+.|.++.|.+....+ .++++++
T Consensus 95 prgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~-----------------------dvg~lt~ 151 (264)
T KOG0617|consen 95 PRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPP-----------------------DVGKLTN 151 (264)
T ss_pred ccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCCh-----------------------hhhhhcc
Confidence 555566666666666666555 345555555555555555553322211 3455555
Q ss_pred CCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCcccc
Q 037483 493 LSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPASIS 536 (693)
Q Consensus 493 L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~ 536 (693)
|+.|.+..|.+.+ +|..++.++.|++|++.+|+++.+|..++
T Consensus 152 lqil~lrdndll~--lpkeig~lt~lrelhiqgnrl~vlppel~ 193 (264)
T KOG0617|consen 152 LQILSLRDNDLLS--LPKEIGDLTRLRELHIQGNRLTVLPPELA 193 (264)
T ss_pred eeEEeeccCchhh--CcHHHHHHHHHHHHhcccceeeecChhhh
Confidence 5555555555422 55555555555555555555555554433
No 11
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.68 E-value=9.9e-19 Score=149.57 Aligned_cols=167 Identities=23% Similarity=0.350 Sum_probs=148.1
Q ss_pred hcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCcccccccccccCCCCccEEecCCCccccC
Q 037483 358 VASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLENVSETLGQVEILEELDISGTTIREP 437 (693)
Q Consensus 358 ~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~l 437 (693)
+.++++.+.|.|++|+++.+|+.+..+.+|+.|++.+| .++.+|.+++.+++|+.|+++-|.+..+
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn--------------qie~lp~~issl~klr~lnvgmnrl~~l 94 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN--------------QIEELPTSISSLPKLRILNVGMNRLNIL 94 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc--------------hhhhcChhhhhchhhhheecchhhhhcC
Confidence 34577889999999999999999999999999999998 5777888889999999999999999999
Q ss_pred CCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCC
Q 037483 438 PSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCS 517 (693)
Q Consensus 438 p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~ 517 (693)
|.+++.++.|+.|++++|++.... ++..|..++.|+.|.+++|.+ +.+|..++++++
T Consensus 95 prgfgs~p~levldltynnl~e~~---------------------lpgnff~m~tlralyl~dndf--e~lp~dvg~lt~ 151 (264)
T KOG0617|consen 95 PRGFGSFPALEVLDLTYNNLNENS---------------------LPGNFFYMTTLRALYLGDNDF--EILPPDVGKLTN 151 (264)
T ss_pred ccccCCCchhhhhhcccccccccc---------------------CCcchhHHHHHHHHHhcCCCc--ccCChhhhhhcc
Confidence 999999999999999999776542 122677778999999999998 569999999999
Q ss_pred CCEEeCCCCCCcccCccccCCCCCCEEecccccceeeccCcccc
Q 037483 518 LKELYLSKNNFVTLPASISGLLNLKELELEDCALKLRKSDCTII 561 (693)
Q Consensus 518 L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~l 561 (693)
|+.|.+..|.+-++|..++.+..|+.|.+.+|++...++....+
T Consensus 152 lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlppel~~l 195 (264)
T KOG0617|consen 152 LQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPPELANL 195 (264)
T ss_pred eeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecChhhhhh
Confidence 99999999999999999999999999999999997666554443
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.64 E-value=9e-19 Score=169.40 Aligned_cols=206 Identities=27% Similarity=0.288 Sum_probs=114.3
Q ss_pred ccccccccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCC
Q 037483 327 LSSLLISLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSID 406 (693)
Q Consensus 327 L~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~ 406 (693)
+..+|..+.++.+|+.|+.++|.. ...|+.++.+..|+.|+..+|++..+|..+.++.+|..|++.+|.
T Consensus 103 ls~lp~~i~s~~~l~~l~~s~n~~-~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~---------- 171 (565)
T KOG0472|consen 103 LSELPEQIGSLISLVKLDCSSNEL-KELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK---------- 171 (565)
T ss_pred HhhccHHHhhhhhhhhhhccccce-eecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc----------
Confidence 344444444444444444444332 223334444444444444444444444444444444444444442
Q ss_pred CCcccccccccccCCCCccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhc-
Q 037483 407 GCFKLENVSETLGQVEILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLF- 485 (693)
Q Consensus 407 ~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 485 (693)
++.+|+..-+|+.|++||...|-++.+|+.++.+.+|..|++..|++...+.........+ ..-+......++.
T Consensus 172 ----l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~E-lh~g~N~i~~lpae 246 (565)
T KOG0472|consen 172 ----LKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKE-LHVGENQIEMLPAE 246 (565)
T ss_pred ----hhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHH-HHhcccHHHhhHHH
Confidence 2334444444566666666666666666666666666666666665544321100000000 0000011122222
Q ss_pred ccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCccccCCCCCCEEecccccc
Q 037483 486 SLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPASISGLLNLKELELEDCAL 551 (693)
Q Consensus 486 ~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~ 551 (693)
...++++|..||+..|++.+ +|+.+..+.+|+.||+|+|.++.+|-.++++ +|+.|.+.+|++
T Consensus 247 ~~~~L~~l~vLDLRdNklke--~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 247 HLKHLNSLLVLDLRDNKLKE--VPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred Hhcccccceeeecccccccc--CchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCch
Confidence 34577888888888888844 8888888888888888888888888888888 888888888887
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.63 E-value=4e-15 Score=176.82 Aligned_cols=222 Identities=27% Similarity=0.347 Sum_probs=158.8
Q ss_pred cccCcCccccccccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCc-CceeecCCcCCCCCCCEEecCCCCCCc
Q 037483 321 LKGCKNLSSLLISLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGT-FITKLPLSIELLTGLELLNLNDCKNLL 399 (693)
Q Consensus 321 l~~~~~L~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~-~l~~l~~~~~~l~~L~~L~L~~~~~~~ 399 (693)
+.++.+++.+| .++.+++|++|++++|.....+|..+.++++|+.|++++| .++.+|..+ ++++|+.|++++|..+.
T Consensus 641 Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~ 718 (1153)
T PLN03210 641 LRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLK 718 (1153)
T ss_pred CCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcc
Confidence 45555666665 5778899999999999988899999999999999999986 677888765 78899999999998777
Q ss_pred cCCCCCCCCc-------ccccccccc------------------------------cCCCCccEEecCCCc-cccCCCcc
Q 037483 400 RLPSSIDGCF-------KLENVSETL------------------------------GQVEILEELDISGTT-IREPPSSI 441 (693)
Q Consensus 400 ~lp~~~~~~~-------~L~~lp~~l------------------------------~~l~~L~~L~l~~n~-i~~lp~~~ 441 (693)
.+|....++. .++.+|..+ ...++|+.|++++|. +..+|.++
T Consensus 719 ~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si 798 (1153)
T PLN03210 719 SFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSI 798 (1153)
T ss_pred ccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhh
Confidence 7664322211 122333211 113567888888874 45678888
Q ss_pred ccCCCCCEEEccCCCCCCCCCCcccc---ccccccCCCCchhhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCC
Q 037483 442 FAIKNLKKLSFSGCSGPPSSASWHLH---FPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSL 518 (693)
Q Consensus 442 ~~l~~L~~L~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L 518 (693)
+++++|+.|++++|......|..... ..+.+.+ +..... .....++|+.|+|++|.++ .+|.++..+++|
T Consensus 799 ~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~--c~~L~~---~p~~~~nL~~L~Ls~n~i~--~iP~si~~l~~L 871 (1153)
T PLN03210 799 QNLHKLEHLEIENCINLETLPTGINLESLESLDLSG--CSRLRT---FPDISTNISDLNLSRTGIE--EVPWWIEKFSNL 871 (1153)
T ss_pred hCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCC--CCcccc---ccccccccCEeECCCCCCc--cChHHHhcCCCC
Confidence 89999999999988765544322100 0000100 000000 0112368999999999995 499999999999
Q ss_pred CEEeCCCC-CCcccCccccCCCCCCEEecccccc
Q 037483 519 KELYLSKN-NFVTLPASISGLLNLKELELEDCAL 551 (693)
Q Consensus 519 ~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~~ 551 (693)
+.|+|++| +++.+|..+..+++|+.|++++|..
T Consensus 872 ~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 872 SFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred CEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence 99999985 7889998889999999999999964
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.62 E-value=3.2e-18 Score=165.58 Aligned_cols=182 Identities=26% Similarity=0.331 Sum_probs=153.3
Q ss_pred cCccccccccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCC
Q 037483 325 KNLSSLLISLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSS 404 (693)
Q Consensus 325 ~~L~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~ 404 (693)
..+.+++.+++.+..|..|+..+|++ ...|..+.++.+|..|++.+|.++.+|+..-.++.|+.||...| .++.+|..
T Consensus 124 n~~~el~~~i~~~~~l~dl~~~~N~i-~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~ 201 (565)
T KOG0472|consen 124 NELKELPDSIGRLLDLEDLDATNNQI-SSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPE 201 (565)
T ss_pred cceeecCchHHHHhhhhhhhcccccc-ccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCChh
Confidence 46788888999999999999998765 45677788899999999999999999887777999999999886 67888888
Q ss_pred CCCCcccc----------cccccccCCCCccEEecCCCccccCCCccc-cCCCCCEEEccCCCCCCCCCCcccccccccc
Q 037483 405 IDGCFKLE----------NVSETLGQVEILEELDISGTTIREPPSSIF-AIKNLKKLSFSGCSGPPSSASWHLHFPFNLM 473 (693)
Q Consensus 405 ~~~~~~L~----------~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 473 (693)
++++.+|+ .+| .|+++..|.+|+++.|+|+.+|.... ++.+|..|++..|++...+.
T Consensus 202 lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pd----------- 269 (565)
T KOG0472|consen 202 LGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPD----------- 269 (565)
T ss_pred hcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCch-----------
Confidence 87776665 456 67888889999999999988887765 88999999999998765533
Q ss_pred CCCCchhhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCccc
Q 037483 474 GKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPASI 535 (693)
Q Consensus 474 ~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l 535 (693)
.+.-+.+|..||+|+|.|+. +|..++++ .|+.|-+.||.+..+-..+
T Consensus 270 ------------e~clLrsL~rLDlSNN~is~--Lp~sLgnl-hL~~L~leGNPlrTiRr~i 316 (565)
T KOG0472|consen 270 ------------EICLLRSLERLDLSNNDISS--LPYSLGNL-HLKFLALEGNPLRTIRREI 316 (565)
T ss_pred ------------HHHHhhhhhhhcccCCcccc--CCcccccc-eeeehhhcCCchHHHHHHH
Confidence 57778999999999999965 99999999 8999999999998665544
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.60 E-value=8.5e-17 Score=155.71 Aligned_cols=245 Identities=20% Similarity=0.235 Sum_probs=151.4
Q ss_pred EEEcCCCCCcccchhhhcCccccceeccCCcCceee-cCCcCCCCCCCEEecCCCCCCccCCCC-CCCCccccc------
Q 037483 342 TLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKL-PLSIELLTGLELLNLNDCKNLLRLPSS-IDGCFKLEN------ 413 (693)
Q Consensus 342 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~L~~~~~~~~lp~~-~~~~~~L~~------ 413 (693)
.++|..|.+....+..|+.+++||.|+|++|.|+.+ |..|..+.+|..|-+.+|..+..+|.. |.++..++.
T Consensus 71 eirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan 150 (498)
T KOG4237|consen 71 EIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN 150 (498)
T ss_pred EEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh
Confidence 344444444443444444555555555555554433 333444444444444443333333332 233332221
Q ss_pred -----ccccccCCCCccEEecCCCccccCCC-ccccCCCCCEEEccCCCCCCCCC-Ccc---------------c-----
Q 037483 414 -----VSETLGQVEILEELDISGTTIREPPS-SIFAIKNLKKLSFSGCSGPPSSA-SWH---------------L----- 466 (693)
Q Consensus 414 -----lp~~l~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~-~~~---------------~----- 466 (693)
..+.+..|++|..|.+..|.+..++. ++..+..++.+.+..|.....-. .|. .
T Consensus 151 ~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~r 230 (498)
T KOG4237|consen 151 HINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYR 230 (498)
T ss_pred hhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHH
Confidence 12557788889999999998888876 67788888888887665221110 000 0
Q ss_pred -------------------cccccccCCCCchhhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCC
Q 037483 467 -------------------HFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNN 527 (693)
Q Consensus 467 -------------------~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~ 527 (693)
.....+.....+....-...|..+++|+.|+|++|.+ ++.-+.+|.....+++|.|..|+
T Consensus 231 l~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i-~~i~~~aFe~~a~l~eL~L~~N~ 309 (498)
T KOG4237|consen 231 LYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKI-TRIEDGAFEGAAELQELYLTRNK 309 (498)
T ss_pred HHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCcc-chhhhhhhcchhhhhhhhcCcch
Confidence 0000111111111111122488999999999999999 45567789999999999999999
Q ss_pred CcccC-ccccCCCCCCEEeccccccee-eccCcccccccCCchhhhc---chhhhHHHHHHHHHh
Q 037483 528 FVTLP-ASISGLLNLKELELEDCALKL-RKSDCTIIKCIDSLKLLVN---NGLAISMLQEYLEAM 587 (693)
Q Consensus 528 l~~lp-~~l~~l~~L~~L~L~~n~~~~-~~~~~~~l~~l~~l~~~~n---~~~~~~~~~~~~~~~ 587 (693)
+..+. ..+.++..|+.|+|.+|+++. ....+..+.+|..+.++.| |.+-..|..+|++..
T Consensus 310 l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~ 374 (498)
T KOG4237|consen 310 LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKK 374 (498)
T ss_pred HHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhC
Confidence 99776 467899999999999999943 3445566777777777655 777778999999854
No 16
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.57 E-value=1.6e-13 Score=162.13 Aligned_cols=263 Identities=17% Similarity=0.178 Sum_probs=175.0
Q ss_pred CccCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc------------
Q 037483 12 KSETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV------------ 79 (693)
Q Consensus 12 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~------------ 79 (693)
+|.....+|-|+.-++.|.+. ...+++.|+|++|.||||++.++.++ ++.+.|+....
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~~------~~~~~~~v~apaG~GKTtl~~~~~~~----~~~~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSGA------NNYRLVLVTSPAGYGKTTLISQWAAG----KNNLGWYSLDESDNQPERFASYL 78 (903)
T ss_pred CCCCccccCcchHHHHHHhcc------cCCCeEEEECCCCCCHHHHHHHHHHh----CCCeEEEecCcccCCHHHHHHHH
Confidence 566677899999777766532 25789999999999999999998863 23577875421
Q ss_pred ---------C-----------------------------CCCCeEEEEEecCCChhh--hh-HHhcCCCcCCCCceEEEE
Q 037483 80 ---------G-----------------------------CNTKKVLLVIDDVVDIKQ--LE-YLVGKREWFGSGSRIIIT 118 (693)
Q Consensus 80 ---------~-----------------------------~~~~~~LlvlDdv~~~~~--~~-~l~~~~~~~~~~~~iliT 118 (693)
+ ..+++++||+||++..++ +. .+........++.++|||
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence 0 115789999999977542 12 222222223567889899
Q ss_pred eCChHHH---HHcCCCceeeCC----CCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHHhhhhcCCC
Q 037483 119 SRDEHLL---KTHGVDELCEPN----GLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVLGSFLNGRS 191 (693)
Q Consensus 119 tR~~~~~---~~~~~~~~~~l~----~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~ 191 (693)
||...-. .........+++ +|+.+|+.++|....+... ..+.+..|.+.|+|+|+++..++..+....
T Consensus 159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~-----~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~ 233 (903)
T PRK04841 159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI-----EAAESSRLCDDVEGWATALQLIALSARQNN 233 (903)
T ss_pred eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC-----CHHHHHHHHHHhCChHHHHHHHHHHHhhCC
Confidence 9984211 111112345555 8999999999987653221 123467899999999999999987765432
Q ss_pred hHHHHHHHHHhccCCCchHHHHHHH-hhccCcHhhHhHHhhhhcccCCCCHHHHHHHHHHcCCCccchhhhhhcCCcEEE
Q 037483 192 TDQWRSTLERLKRDPPNKIMSILQI-SFDGLQDSEKKIFLDVACFFKWKSREYVTKILEACGFSPVIGIEVLIEKSLLIV 270 (693)
Q Consensus 192 ~~~w~~~l~~l~~~~~~~~~~~l~~-s~~~L~~~~~~~~~~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sLi~~ 270 (693)
.. .......+.......+...+.. .++.||++.++++...|+++ .++.+.+..+.. .......++.|.+.+++..
T Consensus 234 ~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~--~~~~~~~L~~l~~~~l~~~ 309 (903)
T PRK04841 234 SS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTG--EENGQMRLEELERQGLFIQ 309 (903)
T ss_pred Cc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcC--CCcHHHHHHHHHHCCCeeE
Confidence 10 1111222222223456665444 48999999999999999986 566665555543 2234566899999999653
Q ss_pred -eC--CCcEehhHHHHHHHHHHhhcc
Q 037483 271 -DE--DNRLQMHDLLQELGHQIVQRQ 293 (693)
Q Consensus 271 -~~--~~~~~~H~lv~~~~~~~~~~~ 293 (693)
.+ ..+|+.|++++++.+..+..+
T Consensus 310 ~~~~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 310 RMDDSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred eecCCCCEEehhHHHHHHHHHHHHhc
Confidence 32 237999999999999887544
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.49 E-value=7.6e-14 Score=154.96 Aligned_cols=191 Identities=21% Similarity=0.262 Sum_probs=114.0
Q ss_pred CccccccccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCC
Q 037483 326 NLSSLLISLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSI 405 (693)
Q Consensus 326 ~L~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~ 405 (693)
+++.+|..+. ++|+.|++++|.+. .+|..+. ++|++|++++|.++.+|..+. .+|+.|+|++|.+. .+|..
T Consensus 189 ~LtsLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~-~LP~~- 259 (754)
T PRK15370 189 GLTTIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRIT-ELPER- 259 (754)
T ss_pred CcCcCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccC-cCChh-
Confidence 4566665443 47899999987654 5665543 589999999999888886553 47899999988543 44432
Q ss_pred CCCcccccccccccCCCCccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCCccc-cccccccCCCCchhhhhh
Q 037483 406 DGCFKLENVSETLGQVEILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSASWHL-HFPFNLMGKSLYPVALML 484 (693)
Q Consensus 406 ~~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 484 (693)
+. .+|+.|++++|+++.+|..+. ++|+.|++++|.+......... ...+.+....+. .++
T Consensus 260 ------------l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt---~LP 320 (754)
T PRK15370 260 ------------LP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLT---ALP 320 (754)
T ss_pred ------------Hh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccc---cCC
Confidence 22 356777777777776665543 4677777777765543211000 000000000000 000
Q ss_pred cccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCccccCCCCCCEEecccccce
Q 037483 485 FSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPASISGLLNLKELELEDCALK 552 (693)
Q Consensus 485 ~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~ 552 (693)
.. -.++|+.|++++|.++. +|..+. ++|+.|++++|+++.+|..+. ++|+.|+|++|++.
T Consensus 321 ~~--l~~sL~~L~Ls~N~Lt~--LP~~l~--~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~Lt 380 (754)
T PRK15370 321 ET--LPPGLKTLEAGENALTS--LPASLP--PELQVLDVSKNQITVLPETLP--PTITTLDVSRNALT 380 (754)
T ss_pred cc--ccccceeccccCCcccc--CChhhc--CcccEEECCCCCCCcCChhhc--CCcCEEECCCCcCC
Confidence 01 12467777777777743 665442 577777777777777775543 57777777777763
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.48 E-value=3.1e-13 Score=149.13 Aligned_cols=223 Identities=21% Similarity=0.149 Sum_probs=120.4
Q ss_pred CccccccccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCC
Q 037483 326 NLSSLLISLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSI 405 (693)
Q Consensus 326 ~L~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~ 405 (693)
+|+.+|..+. ++|+.|++.+|.+. .+|. .+++|++|++++|.++.+|.. .++|+.|++++|.+. .+|...
T Consensus 212 ~LtsLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~-~Lp~lp 281 (788)
T PRK15387 212 GLTTLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLT-HLPALP 281 (788)
T ss_pred CCCcCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCcccCc---ccccceeeccCCchh-hhhhch
Confidence 5666776554 36777777776533 3443 246677777777777766642 345666666666432 333221
Q ss_pred CCCc-------ccccccccccCCCCccEEecCCCccccCCCcccc-----------------CCCCCEEEccCCCCCCCC
Q 037483 406 DGCF-------KLENVSETLGQVEILEELDISGTTIREPPSSIFA-----------------IKNLKKLSFSGCSGPPSS 461 (693)
Q Consensus 406 ~~~~-------~L~~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~-----------------l~~L~~L~l~~~~~~~~~ 461 (693)
.++. +++.+|.. +++|+.|++++|+++.+|..... ..+|++|++++|.+....
T Consensus 282 ~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP 358 (788)
T PRK15387 282 SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLP 358 (788)
T ss_pred hhcCEEECcCCcccccccc---ccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCCCC
Confidence 1111 22333321 24566666666666555331110 135777777777666533
Q ss_pred CCccccccccccCCCCchhhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCccccCCCCC
Q 037483 462 ASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPASISGLLNL 541 (693)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L 541 (693)
........+.+....+. .++. ...+|+.|++++|.++. +|.. .++|+.|++++|.++.+|.. ..+|
T Consensus 359 ~lp~~L~~L~Ls~N~L~---~LP~---l~~~L~~LdLs~N~Lt~--LP~l---~s~L~~LdLS~N~LssIP~l---~~~L 424 (788)
T PRK15387 359 TLPSELYKLWAYNNRLT---SLPA---LPSGLKELIVSGNRLTS--LPVL---PSELKELMVSGNRLTSLPML---PSGL 424 (788)
T ss_pred CCCcccceehhhccccc---cCcc---cccccceEEecCCcccC--CCCc---ccCCCEEEccCCcCCCCCcc---hhhh
Confidence 21110000001111010 0110 12468888888888843 6643 35788888888888887753 2467
Q ss_pred CEEecccccceeeccCcccccccCCchhhhcchh
Q 037483 542 KELELEDCALKLRKSDCTIIKCIDSLKLLVNNGL 575 (693)
Q Consensus 542 ~~L~L~~n~~~~~~~~~~~l~~l~~l~~~~n~~~ 575 (693)
+.|++++|.+.-.+.....+..|..+++.+|...
T Consensus 425 ~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 425 LSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred hhhhhccCcccccChHHhhccCCCeEECCCCCCC
Confidence 7788888887544444455666666777666544
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.45 E-value=6.4e-15 Score=157.45 Aligned_cols=226 Identities=25% Similarity=0.270 Sum_probs=146.0
Q ss_pred CCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCc-------
Q 037483 337 LKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCF------- 409 (693)
Q Consensus 337 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~------- 409 (693)
-++|+.|+...|.+....+.. .-.+|++++++.|.++.+|.+++.+.+|+.++..+|.+ ..+|..+...+
T Consensus 218 g~~l~~L~a~~n~l~~~~~~p--~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~ 294 (1081)
T KOG0618|consen 218 GPSLTALYADHNPLTTLDVHP--VPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSA 294 (1081)
T ss_pred CcchheeeeccCcceeecccc--ccccceeeecchhhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHh
Confidence 356777777777665433322 23578888888888888888888888888888888755 45554433222
Q ss_pred ---ccccccccccCCCCccEEecCCCccccCCCccccC--CCCCEEEccCCCCCCCCCCcc--------ccccccccCCC
Q 037483 410 ---KLENVSETLGQVEILEELDISGTTIREPPSSIFAI--KNLKKLSFSGCSGPPSSASWH--------LHFPFNLMGKS 476 (693)
Q Consensus 410 ---~L~~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l--~~L~~L~l~~~~~~~~~~~~~--------~~~~~~~~~~~ 476 (693)
.++.+|+..+.+++|++|+|..|++..+|+.+..- .+|+.|+.+.|++........ ....-|..+..
T Consensus 295 ~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~ 374 (1081)
T KOG0618|consen 295 AYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDS 374 (1081)
T ss_pred hhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccccc
Confidence 33456666677777777777777777776643321 124555555554443321110 00111222222
Q ss_pred CchhhhhhcccCCCCcCCeeeCCCCCCCCCCCCcc-CCCCCCCCEEeCCCCCCcccCccccCCCCCCEEecccccceeec
Q 037483 477 LYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPND-IGNLCSLKELYLSKNNFVTLPASISGLLNLKELELEDCALKLRK 555 (693)
Q Consensus 477 ~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~-l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~ 555 (693)
+.+ .+.++.+|+.|+|++|++.. +|+. +.++..|++|+||+|.++.+|+.+..++.|++|....|.+...+
T Consensus 375 c~p------~l~~~~hLKVLhLsyNrL~~--fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP 446 (1081)
T KOG0618|consen 375 CFP------VLVNFKHLKVLHLSYNRLNS--FPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP 446 (1081)
T ss_pred chh------hhccccceeeeeeccccccc--CCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech
Confidence 222 57788899999999998843 7754 67888999999999999999888888888888888888774333
Q ss_pred cCcccccccCCchhhhcch
Q 037483 556 SDCTIIKCIDSLKLLVNNG 574 (693)
Q Consensus 556 ~~~~~l~~l~~l~~~~n~~ 574 (693)
....++.|+.+++..|..
T Consensus 447 -e~~~l~qL~~lDlS~N~L 464 (1081)
T KOG0618|consen 447 -ELAQLPQLKVLDLSCNNL 464 (1081)
T ss_pred -hhhhcCcceEEecccchh
Confidence 556666666666666643
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.44 E-value=3.4e-15 Score=159.50 Aligned_cols=199 Identities=25% Similarity=0.270 Sum_probs=119.0
Q ss_pred CccccccccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCC
Q 037483 326 NLSSLLISLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSI 405 (693)
Q Consensus 326 ~L~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~ 405 (693)
++..+|..+..+.+|+.++..+|.+ ..+|..+....+|+.|.+..|.+..+|+....+++|++|+|..|. +.++|+.+
T Consensus 252 ~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~-L~~lp~~~ 329 (1081)
T KOG0618|consen 252 NLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNF 329 (1081)
T ss_pred hhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc-ccccchHH
Confidence 4555565677788888888888765 667777778888888888888888888888889999999999884 55666533
Q ss_pred ------------CCCcccccccccc-cCCCCccEEecCCCccccC-CCccccCCCCCEEEccCCCCCCCCCCcccccccc
Q 037483 406 ------------DGCFKLENVSETL-GQVEILEELDISGTTIREP-PSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFN 471 (693)
Q Consensus 406 ------------~~~~~L~~lp~~l-~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 471 (693)
..+..+..+|..= ..+..|+.|.+.+|.++.- -+.+.+.++|+.|+|++|.+...+..
T Consensus 330 l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas-------- 401 (1081)
T KOG0618|consen 330 LAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPAS-------- 401 (1081)
T ss_pred HhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHH--------
Confidence 1122233333110 1233455555556655522 23445556666666666554433221
Q ss_pred ccCCCCchhhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCccccCCCCCCEEecccccc
Q 037483 472 LMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPASISGLLNLKELELEDCAL 551 (693)
Q Consensus 472 ~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~ 551 (693)
.+.+++.|+.|+||+|.++. +|+.+..++.|++|...+|.+..+| .+.+++.|+++|++.|.+
T Consensus 402 --------------~~~kle~LeeL~LSGNkL~~--Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L 464 (1081)
T KOG0618|consen 402 --------------KLRKLEELEELNLSGNKLTT--LPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNL 464 (1081)
T ss_pred --------------HHhchHHhHHHhcccchhhh--hhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchh
Confidence 34455555555555555533 5555555555555555555555555 445555555555555554
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.44 E-value=1.3e-13 Score=153.12 Aligned_cols=191 Identities=21% Similarity=0.240 Sum_probs=114.4
Q ss_pred CccccccccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCC
Q 037483 326 NLSSLLISLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSI 405 (693)
Q Consensus 326 ~L~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~ 405 (693)
+++.+|..+. ++|++|++++|.+. .+|..+. ++|+.|+|++|.+..+|..+. .+|+.|++++|++. .+|..+
T Consensus 210 ~LtsLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l 281 (754)
T PRK15370 210 ELKSLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNKIS-CLPENL 281 (754)
T ss_pred CCCcCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCccC-cccccc
Confidence 5666665443 58999999987644 5665443 478889999998888887654 47888999877544 445432
Q ss_pred CCCcccccccccccCCCCccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCCccc-cccccccCCCCchhhhhh
Q 037483 406 DGCFKLENVSETLGQVEILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSASWHL-HFPFNLMGKSLYPVALML 484 (693)
Q Consensus 406 ~~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 484 (693)
. ++|+.|++++|+++.+|..+. ++|+.|++++|.+......... ...+.+.... ...++
T Consensus 282 -------------~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~---Lt~LP 341 (754)
T PRK15370 282 -------------P--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPETLPPGLKTLEAGENA---LTSLP 341 (754)
T ss_pred -------------C--CCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCccccccceeccccCCc---cccCC
Confidence 1 245555555555555543322 2444455555444322110000 0000000000 00011
Q ss_pred cccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCccccCCCCCCEEecccccce
Q 037483 485 FSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPASISGLLNLKELELEDCALK 552 (693)
Q Consensus 485 ~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~ 552 (693)
..+ .++|+.|++++|.++. +|..+ .++|++|+|++|+++.+|..+. .+|+.|++++|++.
T Consensus 342 ~~l--~~sL~~L~Ls~N~L~~--LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~ 401 (754)
T PRK15370 342 ASL--PPELQVLDVSKNQITV--LPETL--PPTITTLDVSRNALTNLPENLP--AALQIMQASRNNLV 401 (754)
T ss_pred hhh--cCcccEEECCCCCCCc--CChhh--cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcc
Confidence 122 2589999999998853 77655 3689999999999998887664 36888999999874
No 22
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.43 E-value=1.8e-12 Score=146.92 Aligned_cols=271 Identities=15% Similarity=0.205 Sum_probs=184.5
Q ss_pred CccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc------------------
Q 037483 18 KLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV------------------ 79 (693)
Q Consensus 18 ~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~------------------ 79 (693)
.++||+.+++.|...+....++...++.+.|.+|||||++++++...+.+++ +.++....
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~--~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQR--GYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccc--eeeeHhhcccccCCCchHHHHHHHHH
Confidence 4799999999999999998777889999999999999999999998776552 11211100
Q ss_pred -----------------------------------------------------------------------CCCCCeEEE
Q 037483 80 -----------------------------------------------------------------------GCNTKKVLL 88 (693)
Q Consensus 80 -----------------------------------------------------------------------~~~~~~~Ll 88 (693)
-...+++++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 045579999
Q ss_pred EEecCCChhh-----hhHHhcCCC---cCCCCceEEEEeCCh--HHHHHcCCCceeeCCCCCHHHHHHHHHHhcccCCCC
Q 037483 89 VIDDVVDIKQ-----LEYLVGKRE---WFGSGSRIIITSRDE--HLLKTHGVDELCEPNGLNYDEALQLLNTKAFKTHKP 158 (693)
Q Consensus 89 vlDdv~~~~~-----~~~l~~~~~---~~~~~~~iliTtR~~--~~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~ 158 (693)
|+||+++.+. ++.+..... ......-.+.|.+.. .+.........+.+.+|+..+...+..........
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~- 237 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKL- 237 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccc-
Confidence 9999977654 333333321 001122233344433 22222334578999999999999999888744222
Q ss_pred chHHHHHHHHHHHHhCCCchhHHHHhhhhcCC-------ChHHHHHHHHHhccCC-CchHHHHHHHhhccCcHhhHhHHh
Q 037483 159 LEECAKLSERVPQYAGGLPLALKVLGSFLNGR-------STDQWRSTLERLKRDP-PNKIMSILQISFDGLQDSEKKIFL 230 (693)
Q Consensus 159 ~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~-------~~~~w~~~l~~l~~~~-~~~~~~~l~~s~~~L~~~~~~~~~ 230 (693)
...+....|+++.+|+|+.+..+-..+... +...|..-...+.... .+++...+....+.||...|+++.
T Consensus 238 --~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~ 315 (849)
T COG3899 238 --LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLK 315 (849)
T ss_pred --ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 233457789999999999999998888643 3345665555444322 134556788999999999999999
Q ss_pred hhhcccCCCCHHHHHHHHHHcCCCccchhhhhhcCCcEEEeC--------CC---cEehhHHHHHHHHHHhhcc
Q 037483 231 DVACFFKWKSREYVTKILEACGFSPVIGIEVLIEKSLLIVDE--------DN---RLQMHDLLQELGHQIVQRQ 293 (693)
Q Consensus 231 ~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sLi~~~~--------~~---~~~~H~lv~~~~~~~~~~~ 293 (693)
..||+...++.+.+..++..........+-.....++|.+.. .. +-..|+.+|+.+.....+.
T Consensus 316 ~AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~~ 389 (849)
T COG3899 316 AAACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPES 389 (849)
T ss_pred HHHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCchh
Confidence 999999999999888888753333222333333334443321 11 2267999999988876544
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.39 E-value=1.8e-12 Score=143.20 Aligned_cols=213 Identities=21% Similarity=0.155 Sum_probs=133.1
Q ss_pred CCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCccc-------
Q 037483 339 CLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKL------- 411 (693)
Q Consensus 339 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L------- 411 (693)
.-..|+++.+.+. .+|..+. ++|+.|++++|+++.+|. .+++|++|++++|.+. .+|....++..|
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~Lt-sLP~lp~sL~~L~Ls~N~L 274 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPL 274 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccC-cccCcccccceeeccCCch
Confidence 4667899987654 6777664 489999999999999885 3589999999999655 556543333322
Q ss_pred ccccccccCCCCccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhc------
Q 037483 412 ENVSETLGQVEILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLF------ 485 (693)
Q Consensus 412 ~~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 485 (693)
..+|.. ..+|+.|++++|.++.+|.. +++|+.|++++|.+............+.+....+..++..+.
T Consensus 275 ~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~Ld 348 (788)
T PRK15387 275 THLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELS 348 (788)
T ss_pred hhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCCccccCCCCcccccccccccCccccccccccccceEe
Confidence 233332 25688999999999998863 478999999999887643211100001111111111000000
Q ss_pred ----ccCC----CCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCccccCCCCCCEEecccccceeeccC
Q 037483 486 ----SLSG----LCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPASISGLLNLKELELEDCALKLRKSD 557 (693)
Q Consensus 486 ----~l~~----l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~~~ 557 (693)
.+.. .++|+.|++++|.++ .+|.. .++|+.|++++|.++.+|.. .++|+.|++++|++...+..
T Consensus 349 LS~N~Ls~LP~lp~~L~~L~Ls~N~L~--~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~l 420 (788)
T PRK15387 349 VSDNQLASLPTLPSELYKLWAYNNRLT--SLPAL---PSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPML 420 (788)
T ss_pred cCCCccCCCCCCCcccceehhhccccc--cCccc---ccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCcc
Confidence 0000 124455555555553 24432 35789999999999988854 35899999999998532221
Q ss_pred cccccccCCchhhhcchh
Q 037483 558 CTIIKCIDSLKLLVNNGL 575 (693)
Q Consensus 558 ~~~l~~l~~l~~~~n~~~ 575 (693)
...|..|++.+|...
T Consensus 421 ---~~~L~~L~Ls~NqLt 435 (788)
T PRK15387 421 ---PSGLLSLSVYRNQLT 435 (788)
T ss_pred ---hhhhhhhhhccCccc
Confidence 235566677766654
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.38 E-value=6.2e-14 Score=144.60 Aligned_cols=192 Identities=23% Similarity=0.185 Sum_probs=92.6
Q ss_pred ccCCCCCCcEEEcCCCCCcccchhhhcCccc---cceeccCCcCce-----eecCCcCCC-CCCCEEecCCCCCCccCCC
Q 037483 333 SLSSLKCLRTLELSGCSKLKRFLEIVASMED---LSELYLDGTFIT-----KLPLSIELL-TGLELLNLNDCKNLLRLPS 403 (693)
Q Consensus 333 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~---L~~L~L~~~~l~-----~l~~~~~~l-~~L~~L~L~~~~~~~~lp~ 403 (693)
.+..+++|+.|++++|.+....+..+..+.+ |++|++++|.++ .+...+..+ ++|+.|++++|.+.+.
T Consensus 76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~--- 152 (319)
T cd00116 76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA--- 152 (319)
T ss_pred HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCch---
Confidence 3444556666666665554433333333333 666666666554 122233344 5666666666644321
Q ss_pred CCCCCcccccccccccCCCCccEEecCCCcccc-----CCCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCc
Q 037483 404 SIDGCFKLENVSETLGQVEILEELDISGTTIRE-----PPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLY 478 (693)
Q Consensus 404 ~~~~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~-----lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (693)
....++..+..+++|++|++++|.+++ ++..+..+++|++|++++|.+...
T Consensus 153 ------~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~------------------ 208 (319)
T cd00116 153 ------SCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDE------------------ 208 (319)
T ss_pred ------HHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChH------------------
Confidence 111223334455556666666665552 122333445666666666654321
Q ss_pred hhhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCC----CCCCCCEEeCCCCCCc-----ccCccccCCCCCCEEecccc
Q 037483 479 PVALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIG----NLCSLKELYLSKNNFV-----TLPASISGLLNLKELELEDC 549 (693)
Q Consensus 479 ~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~----~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~L~~n 549 (693)
........+..+++|++|++++|.+++..+..... ..+.|++|++++|.++ .+...+..+++|+++++++|
T Consensus 209 ~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 209 GASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred HHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC
Confidence 11112223445566666666666653211111111 1356666666666654 23334445556666666666
Q ss_pred cc
Q 037483 550 AL 551 (693)
Q Consensus 550 ~~ 551 (693)
.+
T Consensus 289 ~l 290 (319)
T cd00116 289 KF 290 (319)
T ss_pred CC
Confidence 55
No 25
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.33 E-value=2.5e-11 Score=123.77 Aligned_cols=250 Identities=16% Similarity=0.098 Sum_probs=150.3
Q ss_pred CCccccchhHHHHHHHHhcC--CCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEE--EEc------ccCCCCCeE
Q 037483 17 KKLVRIDSCLEELRSLMDEG--LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSF--LVD------EVGCNTKKV 86 (693)
Q Consensus 17 ~~~vGr~~~~~~l~~~l~~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~--~~~------~~~~~~~~~ 86 (693)
.+|||+++.+++|..++... ..+....+.++|++|+|||+||+++++++...+....- ... ....-+...
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 83 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAAILTNLEEGD 83 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHHHHHHhcccCC
Confidence 57999999999999988642 12235668999999999999999999987544321100 000 001223456
Q ss_pred EEEEecCCChhh--hhHHhcCCC-------------------cCCCCceEEEEeCChHHHHHc--CCCceeeCCCCCHHH
Q 037483 87 LLVIDDVVDIKQ--LEYLVGKRE-------------------WFGSGSRIIITSRDEHLLKTH--GVDELCEPNGLNYDE 143 (693)
Q Consensus 87 LlvlDdv~~~~~--~~~l~~~~~-------------------~~~~~~~iliTtR~~~~~~~~--~~~~~~~l~~L~~~e 143 (693)
++++|+++.... .+.+...+. ...+.+-|..|||...+.... .....+++++++.++
T Consensus 84 vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e 163 (305)
T TIGR00635 84 VLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEE 163 (305)
T ss_pred EEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEEeCCCCHHH
Confidence 899999975422 222221110 112345556677764332221 123467899999999
Q ss_pred HHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHHhhhhcCCChHHHHHHH-HHhccCCC---chHHHHHHHhhc
Q 037483 144 ALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVLGSFLNGRSTDQWRSTL-ERLKRDPP---NKIMSILQISFD 219 (693)
Q Consensus 144 a~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~w~~~l-~~l~~~~~---~~~~~~l~~s~~ 219 (693)
..+++.+.+...... -..+....|++.|+|.|..+..++..+. ..+. ..-..... ......+...+.
T Consensus 164 ~~~il~~~~~~~~~~--~~~~al~~ia~~~~G~pR~~~~ll~~~~-------~~a~~~~~~~it~~~v~~~l~~l~~~~~ 234 (305)
T TIGR00635 164 LAEIVSRSAGLLNVE--IEPEAALEIARRSRGTPRIANRLLRRVR-------DFAQVRGQKIINRDIALKALEMLMIDEL 234 (305)
T ss_pred HHHHHHHHHHHhCCC--cCHHHHHHHHHHhCCCcchHHHHHHHHH-------HHHHHcCCCCcCHHHHHHHHHHhCCCCC
Confidence 999999887533222 2234567899999999977665554321 1100 00000001 111222455678
Q ss_pred cCcHhhHhHHhhh-hcccC-CCCHHHHHHHHHHcCCCccchhh-hhhcCCcEEEeCCCc
Q 037483 220 GLQDSEKKIFLDV-ACFFK-WKSREYVTKILEACGFSPVIGIE-VLIEKSLLIVDEDNR 275 (693)
Q Consensus 220 ~L~~~~~~~~~~l-a~f~~-~~~~~~l~~~~~~~~~~~~~~l~-~L~~~sLi~~~~~~~ 275 (693)
.+++.++..+..+ +.+.. +...+.+...+..........++ .|++++||.....++
T Consensus 235 ~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~~~g~ 293 (305)
T TIGR00635 235 GLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRTPRGR 293 (305)
T ss_pred CCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccCCchh
Confidence 8999888877734 55543 34666677666555555566677 699999997654443
No 26
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.32 E-value=9.2e-12 Score=127.66 Aligned_cols=254 Identities=15% Similarity=0.109 Sum_probs=153.5
Q ss_pred ccCCCCccccchhHHHHHHHHhcC--CCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeE--EEEcc------cCCC
Q 037483 13 SETLKKLVRIDSCLEELRSLMDEG--LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSS--FLVDE------VGCN 82 (693)
Q Consensus 13 ~~~~~~~vGr~~~~~~l~~~l~~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~--~~~~~------~~~~ 82 (693)
|..-.+|+|+++.++.+..++... .+...+.+.|+|++|+|||++|+.+++.+...+.... .+... ...-
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~~l~~~l~~l 100 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPGDLAAILTNL 100 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccChHHHHHHHHhc
Confidence 345578999999999998888642 2224567899999999999999999998765432111 11100 0122
Q ss_pred CCeEEEEEecCCChh--hhhHHhcCCC-------------------cCCCCceEEEEeCChHHHHHc--CCCceeeCCCC
Q 037483 83 TKKVLLVIDDVVDIK--QLEYLVGKRE-------------------WFGSGSRIIITSRDEHLLKTH--GVDELCEPNGL 139 (693)
Q Consensus 83 ~~~~LlvlDdv~~~~--~~~~l~~~~~-------------------~~~~~~~iliTtR~~~~~~~~--~~~~~~~l~~L 139 (693)
+..-++++|+++... ..+.+..... ...+.+-|..|+|...+.... .....++++++
T Consensus 101 ~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~ 180 (328)
T PRK00080 101 EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFY 180 (328)
T ss_pred ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCeeeecCCC
Confidence 345689999997543 1121211100 012344556677754332211 12346899999
Q ss_pred CHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHHhhhhcCCChHHHHHHHHHhccCCC---chHHHHHHH
Q 037483 140 NYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVLGSFLNGRSTDQWRSTLERLKRDPP---NKIMSILQI 216 (693)
Q Consensus 140 ~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~w~~~l~~l~~~~~---~~~~~~l~~ 216 (693)
+.++..+++.+.+....... ..+.+..|++.|+|.|..+..+...+. .|... ..-..... ......+..
T Consensus 181 ~~~e~~~il~~~~~~~~~~~--~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~-~~~~~I~~~~v~~~l~~~~~ 252 (328)
T PRK00080 181 TVEELEKIVKRSARILGVEI--DEEGALEIARRSRGTPRIANRLLRRVR-----DFAQV-KGDGVITKEIADKALDMLGV 252 (328)
T ss_pred CHHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHH-cCCCCCCHHHHHHHHHHhCC
Confidence 99999999998875433322 234578899999999976655554321 11110 00000111 122234455
Q ss_pred hhccCcHhhHhHHh-hhhcccC-CCCHHHHHHHHHHcCCCccchhh-hhhcCCcEEEeCCC
Q 037483 217 SFDGLQDSEKKIFL-DVACFFK-WKSREYVTKILEACGFSPVIGIE-VLIEKSLLIVDEDN 274 (693)
Q Consensus 217 s~~~L~~~~~~~~~-~la~f~~-~~~~~~l~~~~~~~~~~~~~~l~-~L~~~sLi~~~~~~ 274 (693)
.+..|++..+..+. .+..|.. +...+.+...+.......+..++ .|++.+||+....+
T Consensus 253 ~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~~~g 313 (328)
T PRK00080 253 DELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRTPRG 313 (328)
T ss_pred CcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcccCCch
Confidence 67889988888886 4555544 34677777776555555555677 89999999755433
No 27
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.29 E-value=8.9e-11 Score=125.94 Aligned_cols=264 Identities=22% Similarity=0.238 Sum_probs=173.1
Q ss_pred CccCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc------------
Q 037483 12 KSETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV------------ 79 (693)
Q Consensus 12 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~------------ 79 (693)
+|......|-|..-+++|... .+.|.+.|..++|.|||||+.++++.. ..-..+.|+.-..
T Consensus 14 ~P~~~~~~v~R~rL~~~L~~~------~~~RL~li~APAGfGKttl~aq~~~~~-~~~~~v~Wlslde~dndp~rF~~yL 86 (894)
T COG2909 14 RPVRPDNYVVRPRLLDRLRRA------NDYRLILISAPAGFGKTTLLAQWRELA-ADGAAVAWLSLDESDNDPARFLSYL 86 (894)
T ss_pred CCCCcccccccHHHHHHHhcC------CCceEEEEeCCCCCcHHHHHHHHHHhc-CcccceeEeecCCccCCHHHHHHHH
Confidence 345567888888766666543 258999999999999999999998843 3445677876521
Q ss_pred --------------------------------------CCCCCeEEEEEecCCChhh---hhHHhcCCCcCCCCceEEEE
Q 037483 80 --------------------------------------GCNTKKVLLVIDDVVDIKQ---LEYLVGKREWFGSGSRIIIT 118 (693)
Q Consensus 80 --------------------------------------~~~~~~~LlvlDdv~~~~~---~~~l~~~~~~~~~~~~iliT 118 (693)
..-.+++.+||||.+-..+ -+.+...+....++-.+++|
T Consensus 87 i~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~ 166 (894)
T COG2909 87 IAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVT 166 (894)
T ss_pred HHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEE
Confidence 0234689999999965432 12222222334689999999
Q ss_pred eCChHHHHH---cCCCceeeCC----CCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHHhhhhcCC-
Q 037483 119 SRDEHLLKT---HGVDELCEPN----GLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVLGSFLNGR- 190 (693)
Q Consensus 119 tR~~~~~~~---~~~~~~~~l~----~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~- 190 (693)
||...-... --.+...+++ .|+.+|+.++|....... -....++.+.+..+|.+-|+..++-.++..
T Consensus 167 SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~-----Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~ 241 (894)
T COG2909 167 SRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLP-----LDAADLKALYDRTEGWAAALQLIALALRNNT 241 (894)
T ss_pred eccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCC-----CChHHHHHHHhhcccHHHHHHHHHHHccCCC
Confidence 998642211 1113345555 589999999998876221 122337789999999999999999888733
Q ss_pred ChHHHHHHHHHhccCCCchHHH-HHHHhhccCcHhhHhHHhhhhcccCCCCHHHHHHHHHHcCCCccchhhhhhcCCcEE
Q 037483 191 STDQWRSTLERLKRDPPNKIMS-ILQISFDGLQDSEKKIFLDVACFFKWKSREYVTKILEACGFSPVIGIEVLIEKSLLI 269 (693)
Q Consensus 191 ~~~~w~~~l~~l~~~~~~~~~~-~l~~s~~~L~~~~~~~~~~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sLi~ 269 (693)
+.+.- +..+... .+.+.. ..+--++.||++.|.++..+|++.. +..+...++... .+....+++|..++|+-
T Consensus 242 ~~~q~---~~~LsG~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~-f~~eL~~~Ltg~--~ng~amLe~L~~~gLFl 314 (894)
T COG2909 242 SAEQS---LRGLSGA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR-FNDELCNALTGE--ENGQAMLEELERRGLFL 314 (894)
T ss_pred cHHHH---hhhccch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH-hhHHHHHHHhcC--CcHHHHHHHHHhCCCce
Confidence 32221 1222211 122332 3344589999999999999999743 222222222211 12233489999999876
Q ss_pred E--eC-CCcEehhHHHHHHHHHHhhccC
Q 037483 270 V--DE-DNRLQMHDLLQELGHQIVQRQS 294 (693)
Q Consensus 270 ~--~~-~~~~~~H~lv~~~~~~~~~~~~ 294 (693)
. ++ ...|+.|.++.+|.+.....+.
T Consensus 315 ~~Ldd~~~WfryH~LFaeFL~~r~~~~~ 342 (894)
T COG2909 315 QRLDDEGQWFRYHHLFAEFLRQRLQREL 342 (894)
T ss_pred eeecCCCceeehhHHHHHHHHhhhcccc
Confidence 3 22 5589999999999999887754
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.27 E-value=4.1e-13 Score=138.46 Aligned_cols=219 Identities=23% Similarity=0.202 Sum_probs=136.9
Q ss_pred cccccCCCCCCcEEEcCCCCCc------ccchhhhcCccccceeccCCcCce-eecCCcCCC---CCCCEEecCCCCCCc
Q 037483 330 LLISLSSLKCLRTLELSGCSKL------KRFLEIVASMEDLSELYLDGTFIT-KLPLSIELL---TGLELLNLNDCKNLL 399 (693)
Q Consensus 330 l~~~l~~l~~L~~L~l~~~~~~------~~~~~~~~~l~~L~~L~L~~~~l~-~l~~~~~~l---~~L~~L~L~~~~~~~ 399 (693)
++..+...++|+.|+++++... ..++..+..+++|++|++++|.+. ..+..+..+ ++|++|++++|....
T Consensus 43 i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~ 122 (319)
T cd00116 43 LASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGD 122 (319)
T ss_pred HHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccch
Confidence 3445566777888888876554 223456667788888888888776 233333333 448888888886442
Q ss_pred cCCCCCCCCcccccccccccCC-CCccEEecCCCcccc-----CCCccccCCCCCEEEccCCCCCCCCCCcccccccccc
Q 037483 400 RLPSSIDGCFKLENVSETLGQV-EILEELDISGTTIRE-----PPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLM 473 (693)
Q Consensus 400 ~lp~~~~~~~~L~~lp~~l~~l-~~L~~L~l~~n~i~~-----lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 473 (693)
. .+..+...+..+ ++|+.|++++|.++. ++..+..+++|++|++++|.+...
T Consensus 123 ~---------~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~------------- 180 (319)
T cd00116 123 R---------GLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA------------- 180 (319)
T ss_pred H---------HHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH-------------
Confidence 1 112233345556 788899999888772 244556677888999888866532
Q ss_pred CCCCchhhhhhcccCCCCcCCeeeCCCCCCCCC---CCCccCCCCCCCCEEeCCCCCCccc-Cccc-----cCCCCCCEE
Q 037483 474 GKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEG---AIPNDIGNLCSLKELYLSKNNFVTL-PASI-----SGLLNLKEL 544 (693)
Q Consensus 474 ~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~---~~p~~l~~l~~L~~L~L~~n~l~~l-p~~l-----~~l~~L~~L 544 (693)
........+..+++|+.|++++|.+++. .++..+..+++|++|++++|.++.. ...+ ...+.|+.|
T Consensus 181 -----~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L 255 (319)
T cd00116 181 -----GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTL 255 (319)
T ss_pred -----HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEE
Confidence 1112222455567899999999887432 1334566778899999999888731 1111 124789999
Q ss_pred ecccccce-----eeccCcccccccCCchhhhcchh
Q 037483 545 ELEDCALK-----LRKSDCTIIKCIDSLKLLVNNGL 575 (693)
Q Consensus 545 ~L~~n~~~-----~~~~~~~~l~~l~~l~~~~n~~~ 575 (693)
++++|.+. -....++.++.|..+++..|...
T Consensus 256 ~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 256 SLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred EccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 99999873 11223444455666666666544
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.26 E-value=1.9e-13 Score=138.69 Aligned_cols=168 Identities=25% Similarity=0.321 Sum_probs=80.4
Q ss_pred EEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCcccccccccccCC
Q 037483 342 TLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLENVSETLGQV 421 (693)
Q Consensus 342 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~lp~~l~~l 421 (693)
..|++.|. ...+|..++.+..|+.+.|..|.+..+|..+.++..|.+|+|+.|+ +..+|..++.|
T Consensus 79 ~aDlsrNR-~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq--------------lS~lp~~lC~l 143 (722)
T KOG0532|consen 79 FADLSRNR-FSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ--------------LSHLPDGLCDL 143 (722)
T ss_pred hhhccccc-cccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch--------------hhcCChhhhcC
Confidence 34555433 2334444555555555555555555555555555555555555552 22233333333
Q ss_pred CCccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCeeeCCCC
Q 037483 422 EILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYC 501 (693)
Q Consensus 422 ~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n 501 (693)
+ |+.|-+++|+++.+|..++.+..|..|+.+.|.+....+ .++++.+|+.|++..|
T Consensus 144 p-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slps-----------------------ql~~l~slr~l~vrRn 199 (722)
T KOG0532|consen 144 P-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPS-----------------------QLGYLTSLRDLNVRRN 199 (722)
T ss_pred c-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchH-----------------------HhhhHHHHHHHHHhhh
Confidence 3 444555555555555555544455555555444332211 3444444444555444
Q ss_pred CCCCCCCCccCCCCCCCCEEeCCCCCCcccCccccCCCCCCEEecccccc
Q 037483 502 GLGEGAIPNDIGNLCSLKELYLSKNNFVTLPASISGLLNLKELELEDCAL 551 (693)
Q Consensus 502 ~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~ 551 (693)
++.. +|..+..|+ |..||+|+|+++.||-.|.+++.|++|-|.+|++
T Consensus 200 ~l~~--lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 200 HLED--LPEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred hhhh--CCHHHhCCc-eeeeecccCceeecchhhhhhhhheeeeeccCCC
Confidence 4422 444444332 4445555555555554455555555555555544
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=3.8e-12 Score=125.60 Aligned_cols=185 Identities=25% Similarity=0.251 Sum_probs=138.1
Q ss_pred cCCCCCCcEEEcCCCCCcc--cchhhhcCccccceeccCCcCceeecCCc--CCCCCCCEEecCCCCCCccCCCCCCCCc
Q 037483 334 LSSLKCLRTLELSGCSKLK--RFLEIVASMEDLSELYLDGTFITKLPLSI--ELLTGLELLNLNDCKNLLRLPSSIDGCF 409 (693)
Q Consensus 334 l~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~L~~~~l~~l~~~~--~~l~~L~~L~L~~~~~~~~lp~~~~~~~ 409 (693)
...|++++.|||+.|-+.. .+......+++|+.|+|+.|.+....++. ..+++|+.|.|+.|.+..
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~---------- 211 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSW---------- 211 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCH----------
Confidence 3568899999999975433 23456788999999999999887544332 467899999999996542
Q ss_pred ccccccccccCCCCccEEecCCCc-cccCCCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccC
Q 037483 410 KLENVSETLGQVEILEELDISGTT-IREPPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLS 488 (693)
Q Consensus 410 ~L~~lp~~l~~l~~L~~L~l~~n~-i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 488 (693)
..+-..+..+|+|+.|++.+|. +..--.....+..|+.|+|++|.+....... ..+
T Consensus 212 --k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~---------------------~~~ 268 (505)
T KOG3207|consen 212 --KDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGY---------------------KVG 268 (505)
T ss_pred --HHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccc---------------------ccc
Confidence 1222334567889999999995 3222334456788999999999876553211 567
Q ss_pred CCCcCCeeeCCCCCCCCCCCCcc-----CCCCCCCCEEeCCCCCCcccC--ccccCCCCCCEEecccccc
Q 037483 489 GLCSLSKLDLSYCGLGEGAIPND-----IGNLCSLKELYLSKNNFVTLP--ASISGLLNLKELELEDCAL 551 (693)
Q Consensus 489 ~l~~L~~L~ls~n~l~~~~~p~~-----l~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~L~~n~~ 551 (693)
.++.|..|+++.|++++-..|+. ...+++|++|+++.|++..++ ..+..+++|+.|.+..|.+
T Consensus 269 ~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 269 TLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred cccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 88999999999999977666665 467899999999999998666 3566788899999888887
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=2.1e-12 Score=127.39 Aligned_cols=182 Identities=21% Similarity=0.203 Sum_probs=134.7
Q ss_pred CCCCCCcEEEcCCCCCcccch--hhhcCccccceeccCCcCcee---ecCCcCCCCCCCEEecCCCCCCccCCCCCCCCc
Q 037483 335 SSLKCLRTLELSGCSKLKRFL--EIVASMEDLSELYLDGTFITK---LPLSIELLTGLELLNLNDCKNLLRLPSSIDGCF 409 (693)
Q Consensus 335 ~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~L~~~~l~~---l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~ 409 (693)
+++.+|+...|.++.. +..+ .....+++++.|+|++|-+.. +......|++|+.|+|+.|.+........
T Consensus 118 sn~kkL~~IsLdn~~V-~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~---- 192 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRV-EDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT---- 192 (505)
T ss_pred hhHHhhhheeecCccc-cccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc----
Confidence 5677888899987653 3333 367789999999999997763 33445789999999999997644332211
Q ss_pred ccccccccccCCCCccEEecCCCccc--cCCCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhccc
Q 037483 410 KLENVSETLGQVEILEELDISGTTIR--EPPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSL 487 (693)
Q Consensus 410 ~L~~lp~~l~~l~~L~~L~l~~n~i~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 487 (693)
-..+++|+.|.++.|.++ ++...+..+++|..|.|.+|........ ..
T Consensus 193 --------~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~----------------------~~ 242 (505)
T KOG3207|consen 193 --------TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKAT----------------------ST 242 (505)
T ss_pred --------hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecc----------------------hh
Confidence 135678999999999988 2334456789999999999953222111 34
Q ss_pred CCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCc--ccCcc-----ccCCCCCCEEecccccc
Q 037483 488 SGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFV--TLPAS-----ISGLLNLKELELEDCAL 551 (693)
Q Consensus 488 ~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~--~lp~~-----l~~l~~L~~L~L~~n~~ 551 (693)
..+..|+.|||++|++.+...-...+.++.|+.|+++.|.++ .+|+. ...+++|++|+++.|++
T Consensus 243 ~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 243 KILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred hhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 456789999999999855222256788999999999999998 44544 46789999999999998
No 32
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.19 E-value=3.5e-09 Score=112.28 Aligned_cols=253 Identities=17% Similarity=0.158 Sum_probs=148.7
Q ss_pred CccCCCCccccchhHHHHHHHHhcC-CCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccc--eeEEEEccc---------
Q 037483 12 KSETLKKLVRIDSCLEELRSLMDEG-LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFE--GSSFLVDEV--------- 79 (693)
Q Consensus 12 ~~~~~~~~vGr~~~~~~l~~~l~~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~~~~--------- 79 (693)
+...++.++||++++++|...+... .++....+.|+|++|+|||++++.+++.+....+ ..+++....
T Consensus 25 ~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 25 PDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHH
Confidence 3446678999999999999998553 2334567899999999999999999998765432 223332210
Q ss_pred -------C----------------------CCCCeEEEEEecCCChh------hhhHHhcCCCcC-CCCceEEEEeCChH
Q 037483 80 -------G----------------------CNTKKVLLVIDDVVDIK------QLEYLVGKREWF-GSGSRIIITSRDEH 123 (693)
Q Consensus 80 -------~----------------------~~~~~~LlvlDdv~~~~------~~~~l~~~~~~~-~~~~~iliTtR~~~ 123 (693)
+ ..+++++||||+++... .+..+....... +....+|.++.+..
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLT 184 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcc
Confidence 0 12456899999997753 233333322211 11333666666544
Q ss_pred HHHHcC-------CCceeeCCCCCHHHHHHHHHHhccc---CCCCch-HHHHHHHHHHHHhCCCchhHHHHhhhh--c--
Q 037483 124 LLKTHG-------VDELCEPNGLNYDEALQLLNTKAFK---THKPLE-ECAKLSERVPQYAGGLPLALKVLGSFL--N-- 188 (693)
Q Consensus 124 ~~~~~~-------~~~~~~l~~L~~~ea~~l~~~~~~~---~~~~~~-~~~~~~~~i~~~~~g~Plal~~~~~~l--~-- 188 (693)
+..... ....+.+++++.++..+++..++-. .....+ ....+++......|..+.|+..+-... .
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER 264 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 332211 1246789999999999999887621 112222 222222322222455667776653321 1
Q ss_pred -C---CChHHHHHHHHHhccCCCchHHHHHHHhhccCcHhhHhHHhhhhccc----CCCCHHHHHHH----HHHcCCCc-
Q 037483 189 -G---RSTDQWRSTLERLKRDPPNKIMSILQISFDGLQDSEKKIFLDVACFF----KWKSREYVTKI----LEACGFSP- 255 (693)
Q Consensus 189 -~---~~~~~w~~~l~~l~~~~~~~~~~~l~~s~~~L~~~~~~~~~~la~f~----~~~~~~~l~~~----~~~~~~~~- 255 (693)
+ -+.+.+..++++.. .......+..||.++|.++..++... .......+... ....|..+
T Consensus 265 ~~~~~I~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~~ 337 (394)
T PRK00411 265 EGSRKVTEEDVRKAYEKSE-------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEPR 337 (394)
T ss_pred cCCCCcCHHHHHHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCcC
Confidence 1 14455555555541 22345568899999999988877543 22344443322 22234332
Q ss_pred -----cchhhhhhcCCcEEEe
Q 037483 256 -----VIGIEVLIEKSLLIVD 271 (693)
Q Consensus 256 -----~~~l~~L~~~sLi~~~ 271 (693)
...+..|.+.++|...
T Consensus 338 ~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 338 THTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred cHHHHHHHHHHHHhcCCeEEE
Confidence 2347889999998864
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.17 E-value=6.7e-13 Score=134.84 Aligned_cols=183 Identities=25% Similarity=0.341 Sum_probs=154.2
Q ss_pred CccccccccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCC
Q 037483 326 NLSSLLISLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSI 405 (693)
Q Consensus 326 ~L~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~ 405 (693)
++.++|..+..|..|..+.|..|. ...+|..+.++..|++|+|+.|++..+|..++.|+ |+.|-+++|
T Consensus 86 R~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN---------- 153 (722)
T KOG0532|consen 86 RFSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN---------- 153 (722)
T ss_pred ccccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC----------
Confidence 456777777888888888888865 45678889999999999999999999999998887 999999987
Q ss_pred CCCcccccccccccCCCCccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhc
Q 037483 406 DGCFKLENVSETLGQVEILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLF 485 (693)
Q Consensus 406 ~~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (693)
++..+|+.++.++.|..||.+.|.+..+|.-++.+.+|+.|++..|.......
T Consensus 154 ----kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~----------------------- 206 (722)
T KOG0532|consen 154 ----KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPE----------------------- 206 (722)
T ss_pred ----ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCH-----------------------
Confidence 66777778888899999999999999999999999999999999987665432
Q ss_pred ccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCccc---cCCCCCCEEeccccc
Q 037483 486 SLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPASI---SGLLNLKELELEDCA 550 (693)
Q Consensus 486 ~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l---~~l~~L~~L~L~~n~ 550 (693)
.+.. -.|..||+|+|+++. +|-.|.+|+.|++|-|.+|.+++=|..+ +...-.++|+..-|.
T Consensus 207 El~~-LpLi~lDfScNkis~--iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 207 ELCS-LPLIRLDFSCNKISY--LPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred HHhC-CceeeeecccCceee--cchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 3443 358899999999955 9999999999999999999999877655 455667888888884
No 34
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.17 E-value=5.1e-11 Score=116.76 Aligned_cols=160 Identities=23% Similarity=0.248 Sum_probs=92.6
Q ss_pred ccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEc-----------c---------
Q 037483 19 LVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVD-----------E--------- 78 (693)
Q Consensus 19 ~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~-----------~--------- 78 (693)
|+||++++++|.+++..+ ..+.+.|+|+.|+|||+|++++.+...+.....+|+.. .
T Consensus 1 F~gR~~el~~l~~~l~~~---~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG---PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH-----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhh---cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHH
Confidence 799999999999999863 34689999999999999999998865322111111110 0
Q ss_pred --------------------c---------------CCCCCeEEEEEecCCChh-h-------hhHHhcCCCc--CCCCc
Q 037483 79 --------------------V---------------GCNTKKVLLVIDDVVDIK-Q-------LEYLVGKREW--FGSGS 113 (693)
Q Consensus 79 --------------------~---------------~~~~~~~LlvlDdv~~~~-~-------~~~l~~~~~~--~~~~~ 113 (693)
. ...++++++|+||++... . ...+...+.. .....
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 157 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV 157 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc
Confidence 0 022345999999997666 1 1122221111 12344
Q ss_pred eEEEEeCChHHHHH--------cCCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHH
Q 037483 114 RIIITSRDEHLLKT--------HGVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKV 182 (693)
Q Consensus 114 ~iliTtR~~~~~~~--------~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 182 (693)
.++++.....+... .+....+.+++|+.+++.+++...+-.. .......+..++|++.+||+|..|..
T Consensus 158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 45566655554443 2233458999999999999998875322 11112344568899999999988764
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.16 E-value=3.8e-12 Score=119.27 Aligned_cols=128 Identities=27% Similarity=0.280 Sum_probs=92.7
Q ss_pred CCCccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCeeeCCC
Q 037483 421 VEILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSY 500 (693)
Q Consensus 421 l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~ 500 (693)
.+.|++||||+|.|+.+..++.-++.++.|+++.|.+.... .+..+++|+.||||+
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~------------------------nLa~L~~L~~LDLS~ 338 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ------------------------NLAELPQLQLLDLSG 338 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh------------------------hhhhcccceEeeccc
Confidence 35678888888888888778888888888888888776542 566778888888888
Q ss_pred CCCCCCCCCccCCCCCCCCEEeCCCCCCcccCccccCCCCCCEEecccccce--eeccCcccccccCCchhhhcchh
Q 037483 501 CGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPASISGLLNLKELELEDCALK--LRKSDCTIIKCIDSLKLLVNNGL 575 (693)
Q Consensus 501 n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~--~~~~~~~~l~~l~~l~~~~n~~~ 575 (693)
|.++. +-.+=.++-+.++|.|++|.+..+. .+.++-+|..||+++|++. .......+|++|..+.+.+|...
T Consensus 339 N~Ls~--~~Gwh~KLGNIKtL~La~N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 339 NLLAE--CVGWHLKLGNIKTLKLAQNKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred chhHh--hhhhHhhhcCEeeeehhhhhHhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 87743 5455556778888888888887776 6777888888888888872 22344556666666666666443
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.14 E-value=4.1e-11 Score=127.19 Aligned_cols=177 Identities=32% Similarity=0.450 Sum_probs=128.6
Q ss_pred cCCCCCCcEEEcCCCCCcccchhhhcCcc-ccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCcccc
Q 037483 334 LSSLKCLRTLELSGCSKLKRFLEIVASME-DLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLE 412 (693)
Q Consensus 334 l~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~ 412 (693)
+..++.++.|++.++.. ..++.....+. +|+.|++++|.+..+|..+..+++|+.|++++| .+.
T Consensus 112 ~~~~~~l~~L~l~~n~i-~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N--------------~l~ 176 (394)
T COG4886 112 LLELTNLTSLDLDNNNI-TDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN--------------DLS 176 (394)
T ss_pred hhcccceeEEecCCccc-ccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc--------------hhh
Confidence 34456677777777553 34444455553 777888888777777666777777888887777 344
Q ss_pred cccccccCCCCccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCc
Q 037483 413 NVSETLGQVEILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCS 492 (693)
Q Consensus 413 ~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 492 (693)
.+|...+.+++|+.|++++|.++.+|..+..+..|+.|.+++|...... ..+.++.+
T Consensus 177 ~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~-----------------------~~~~~~~~ 233 (394)
T COG4886 177 DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELL-----------------------SSLSNLKN 233 (394)
T ss_pred hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecc-----------------------hhhhhccc
Confidence 4444444677788888888888888776666667888888777422221 15677788
Q ss_pred CCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCccccCCCCCCEEecccccc
Q 037483 493 LSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPASISGLLNLKELELEDCAL 551 (693)
Q Consensus 493 L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~ 551 (693)
+..|.+.+|.+.. ++..++.+++|++|++++|.++.++. ++.+.+|+.|++++|.+
T Consensus 234 l~~l~l~~n~~~~--~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 234 LSGLELSNNKLED--LPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSL 289 (394)
T ss_pred ccccccCCceeee--ccchhccccccceecccccccccccc-ccccCccCEEeccCccc
Confidence 8888888888733 57788888999999999999998886 88889999999999876
No 37
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.11 E-value=3e-12 Score=124.60 Aligned_cols=221 Identities=21% Similarity=0.227 Sum_probs=140.0
Q ss_pred cccchhhhcCccccceeccCCcCceeecCC-cCCCCCCCEEecCCCCCCccCCCCCCCCcccc-----------ccc-cc
Q 037483 351 LKRFLEIVASMEDLSELYLDGTFITKLPLS-IELLTGLELLNLNDCKNLLRLPSSIDGCFKLE-----------NVS-ET 417 (693)
Q Consensus 351 ~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~-----------~lp-~~ 417 (693)
+..+|..+. +.-.+++|..|+|+.+|+. |+.+++|+.|||++|.+...-|+.|.++.++. .+| ..
T Consensus 58 L~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~ 135 (498)
T KOG4237|consen 58 LTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA 135 (498)
T ss_pred cccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence 344554432 3567899999999999865 78999999999999999888888876655443 344 34
Q ss_pred ccCCCCccEEecCCCccccC-CCccccCCCCCEEEccCCCCCCCCCCccc--------cccc-------cccCCCCchhh
Q 037483 418 LGQVEILEELDISGTTIREP-PSSIFAIKNLKKLSFSGCSGPPSSASWHL--------HFPF-------NLMGKSLYPVA 481 (693)
Q Consensus 418 l~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~--------~~~~-------~~~~~~~~~~~ 481 (693)
|++|..|+.|.+.-|.+.-+ ...+..+++|..|.+..|.+......... +... +++-... ...
T Consensus 136 F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~-~~a 214 (498)
T KOG4237|consen 136 FGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLAD-DLA 214 (498)
T ss_pred hhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhh-HHh
Confidence 67777777777777777765 44567788888888877765443321110 0000 0000000 000
Q ss_pred hhhcccCCC----------------------CcCCee---eCCCCCCCCCCCC-ccCCCCCCCCEEeCCCCCCcccC-cc
Q 037483 482 LMLFSLSGL----------------------CSLSKL---DLSYCGLGEGAIP-NDIGNLCSLKELYLSKNNFVTLP-AS 534 (693)
Q Consensus 482 ~~~~~l~~l----------------------~~L~~L---~ls~n~l~~~~~p-~~l~~l~~L~~L~L~~n~l~~lp-~~ 534 (693)
..+..++.. .+++.+ -.+.+.. +...| ..|+.+++|++|+|++|.++.+. .+
T Consensus 215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~-d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a 293 (498)
T KOG4237|consen 215 MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFP-DSICPAKCFKKLPNLRKLNLSNNKITRIEDGA 293 (498)
T ss_pred hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCc-CCcChHHHHhhcccceEeccCCCccchhhhhh
Confidence 000011111 111111 1122222 23344 34788999999999999999775 68
Q ss_pred ccCCCCCCEEecccccce-eeccCcccccccCCchhhhcchh
Q 037483 535 ISGLLNLKELELEDCALK-LRKSDCTIIKCIDSLKLLVNNGL 575 (693)
Q Consensus 535 l~~l~~L~~L~L~~n~~~-~~~~~~~~l~~l~~l~~~~n~~~ 575 (693)
|..+..++.|.|..|++. ....-+..+..|..|++..|...
T Consensus 294 Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it 335 (498)
T KOG4237|consen 294 FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT 335 (498)
T ss_pred hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE
Confidence 899999999999999993 33445567777888888877544
No 38
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.07 E-value=2.5e-08 Score=104.73 Aligned_cols=255 Identities=17% Similarity=0.129 Sum_probs=147.8
Q ss_pred CCCccCCCCccccchhHHHHHHHHhcC-CCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccc------eeEEEEccc---
Q 037483 10 PVKSETLKKLVRIDSCLEELRSLMDEG-LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFE------GSSFLVDEV--- 79 (693)
Q Consensus 10 ~~~~~~~~~~vGr~~~~~~l~~~l~~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~------~~~~~~~~~--- 79 (693)
-.+.+.++.++||++++++|.+.+... .++....+.|+|++|+|||++++++++++....+ ..+|+....
T Consensus 8 l~~~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~ 87 (365)
T TIGR02928 8 LEPDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDT 87 (365)
T ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCC
Confidence 345566779999999999999998752 2234567999999999999999999987653322 123333200
Q ss_pred ---------------C----------------------CCCCeEEEEEecCCChh--h---hhHHhcCC--C-cCCCCce
Q 037483 80 ---------------G----------------------CNTKKVLLVIDDVVDIK--Q---LEYLVGKR--E-WFGSGSR 114 (693)
Q Consensus 80 ---------------~----------------------~~~~~~LlvlDdv~~~~--~---~~~l~~~~--~-~~~~~~~ 114 (693)
+ ..++++++|||+++... . +..+.... . ..+....
T Consensus 88 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~ 167 (365)
T TIGR02928 88 LYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVG 167 (365)
T ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEE
Confidence 0 12457899999998762 1 22222221 1 1113344
Q ss_pred EEEEeCChHHHHHcC-------CCceeeCCCCCHHHHHHHHHHhcc---cCCCCchHHHHHHHHHHHHhCCCchhHHHHh
Q 037483 115 IIITSRDEHLLKTHG-------VDELCEPNGLNYDEALQLLNTKAF---KTHKPLEECAKLSERVPQYAGGLPLALKVLG 184 (693)
Q Consensus 115 iliTtR~~~~~~~~~-------~~~~~~l~~L~~~ea~~l~~~~~~---~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 184 (693)
+|.++.......... ....+.+++.+.+|..+++..++- ....-.++..+.+..++....|.|..+..+.
T Consensus 168 lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l 247 (365)
T TIGR02928 168 VIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLL 247 (365)
T ss_pred EEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 555565443222111 124678999999999999988763 2222233344455667777788885443322
Q ss_pred hh-h--c---C---CChHHHHHHHHHhccCCCchHHHHHHHhhccCcHhhHhHHhhhhcccC----CCCHHHHHH----H
Q 037483 185 SF-L--N---G---RSTDQWRSTLERLKRDPPNKIMSILQISFDGLQDSEKKIFLDVACFFK----WKSREYVTK----I 247 (693)
Q Consensus 185 ~~-l--~---~---~~~~~w~~~l~~l~~~~~~~~~~~l~~s~~~L~~~~~~~~~~la~f~~----~~~~~~l~~----~ 247 (693)
.. . . + -+.+....+.+.+. .....-++..||.+++.++..++..-. ......+.. +
T Consensus 248 ~~a~~~a~~~~~~~it~~~v~~a~~~~~-------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~ 320 (365)
T TIGR02928 248 RVAGEIAEREGAERVTEDHVEKAQEKIE-------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEV 320 (365)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 11 1 1 1 23444444444431 233445678999999888877663321 123333322 1
Q ss_pred HHHcCCCc------cchhhhhhcCCcEEEe
Q 037483 248 LEACGFSP------VIGIEVLIEKSLLIVD 271 (693)
Q Consensus 248 ~~~~~~~~------~~~l~~L~~~sLi~~~ 271 (693)
....|..+ ...+..|...|+|+..
T Consensus 321 ~~~~~~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 321 CEDIGVDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHhcCCCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 22223222 2347888889998865
No 39
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.07 E-value=6.2e-11 Score=107.29 Aligned_cols=35 Identities=29% Similarity=0.242 Sum_probs=12.3
Q ss_pred CCCCCCCCEEeCCCCCCcccCc----cccCCCCCCEEec
Q 037483 512 IGNLCSLKELYLSKNNFVTLPA----SISGLLNLKELEL 546 (693)
Q Consensus 512 l~~l~~L~~L~L~~n~l~~lp~----~l~~l~~L~~L~L 546 (693)
+..+++|+.|+|.+|.++.-+. .+..+|+|+.||-
T Consensus 109 L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 109 LSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp GGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred HHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 3344455555555554443321 2344555555544
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.07 E-value=1.4e-11 Score=115.57 Aligned_cols=127 Identities=24% Similarity=0.250 Sum_probs=69.5
Q ss_pred CCCCCEEecCCCCCCccCCCCCCCCcccccccccccCCCCccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCC
Q 037483 384 LTGLELLNLNDCKNLLRLPSSIDGCFKLENVSETLGQVEILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSAS 463 (693)
Q Consensus 384 l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~ 463 (693)
.+.|+.|||++| .+..+.++..-+|.++.|++|+|.|..+. .+..+++|+.|+|++|.+.....
T Consensus 283 Wq~LtelDLS~N--------------~I~~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~Ls~~~G- 346 (490)
T KOG1259|consen 283 WQELTELDLSGN--------------LITQIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNLLAECVG- 346 (490)
T ss_pred Hhhhhhcccccc--------------chhhhhhhhhhccceeEEeccccceeeeh-hhhhcccceEeecccchhHhhhh-
Confidence 445566666665 23333344444555666666666665553 25556666666666665443321
Q ss_pred ccccccccccCCCCchhhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccC--ccccCCCCC
Q 037483 464 WHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLP--ASISGLLNL 541 (693)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L 541 (693)
.-.++.+++.|.|++|.+.+ ...++++-+|..||+++|+|..+. ..++++|.|
T Consensus 347 ----------------------wh~KLGNIKtL~La~N~iE~---LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCL 401 (490)
T KOG1259|consen 347 ----------------------WHLKLGNIKTLKLAQNKIET---LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCL 401 (490)
T ss_pred ----------------------hHhhhcCEeeeehhhhhHhh---hhhhHhhhhheeccccccchhhHHHhcccccccHH
Confidence 11233456666666665521 234555666666666666666443 356666666
Q ss_pred CEEecccccc
Q 037483 542 KELELEDCAL 551 (693)
Q Consensus 542 ~~L~L~~n~~ 551 (693)
+.|.|.+|++
T Consensus 402 E~l~L~~NPl 411 (490)
T KOG1259|consen 402 ETLRLTGNPL 411 (490)
T ss_pred HHHhhcCCCc
Confidence 6666666666
No 41
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.03 E-value=1.1e-10 Score=105.57 Aligned_cols=105 Identities=31% Similarity=0.416 Sum_probs=40.4
Q ss_pred CCCCccEEecCCCccccCCCccc-cCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCeeeC
Q 037483 420 QVEILEELDISGTTIREPPSSIF-AIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDL 498 (693)
Q Consensus 420 ~l~~L~~L~l~~n~i~~lp~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 498 (693)
+..++++|+|.+|.|+.+. .++ .+.+|+.|++++|.+.... .+..+++|+.|++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~------------------------~l~~L~~L~~L~L 71 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE------------------------GLPGLPRLKTLDL 71 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--T------------------------T----TT--EEE-
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc------------------------CccChhhhhhccc
Confidence 3445788888888887763 454 5778888888888776542 5667788999999
Q ss_pred CCCCCCCCCCCccC-CCCCCCCEEeCCCCCCcccC--ccccCCCCCCEEecccccc
Q 037483 499 SYCGLGEGAIPNDI-GNLCSLKELYLSKNNFVTLP--ASISGLLNLKELELEDCAL 551 (693)
Q Consensus 499 s~n~l~~~~~p~~l-~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~L~~n~~ 551 (693)
++|.|++ +...+ ..+++|++|++++|++..+. ..++.+++|+.|+|.+|++
T Consensus 72 ~~N~I~~--i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 72 SNNRISS--ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp -SS---S---CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred CCCCCCc--cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 9999854 55444 36899999999999998654 4678899999999999998
No 42
>PRK06893 DNA replication initiation factor; Validated
Probab=99.01 E-value=4.4e-09 Score=101.60 Aligned_cols=143 Identities=14% Similarity=0.140 Sum_probs=92.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc---------CCCCCeEEEEEecCCCh---hhhh-HHhcCCC
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV---------GCNTKKVLLVIDDVVDI---KQLE-YLVGKRE 107 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~---------~~~~~~~LlvlDdv~~~---~~~~-~l~~~~~ 107 (693)
.+.+.|||++|+|||+||+++++.+..+.....|+.... ..-.+.-++|+||++.. .+|+ .+...++
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~dlLilDDi~~~~~~~~~~~~l~~l~n 118 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFSPAVLENLEQQDLVCLDDLQAVIGNEEWELAIFDLFN 118 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhhHHHHhhcccCCEEEEeChhhhcCChHHHHHHHHHHH
Confidence 457899999999999999999998766555566665521 01123358999999863 3343 2222222
Q ss_pred cC-CCCceEEE-EeCC---------hHHHHHcCCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCC
Q 037483 108 WF-GSGSRIII-TSRD---------EHLLKTHGVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGL 176 (693)
Q Consensus 108 ~~-~~~~~ili-TtR~---------~~~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 176 (693)
.. ..|..+|+ |++. +.+...+....+++++++++++.++++.+.+....... ..+...-|++++.|.
T Consensus 119 ~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l--~~~v~~~L~~~~~~d 196 (229)
T PRK06893 119 RIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIEL--SDEVANFLLKRLDRD 196 (229)
T ss_pred HHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHhccCC
Confidence 11 24556655 4443 35566666667899999999999999999886443221 223456677777776
Q ss_pred chhHHHHhh
Q 037483 177 PLALKVLGS 185 (693)
Q Consensus 177 Plal~~~~~ 185 (693)
.-.+..+-.
T Consensus 197 ~r~l~~~l~ 205 (229)
T PRK06893 197 MHTLFDALD 205 (229)
T ss_pred HHHHHHHHH
Confidence 655544433
No 43
>PF05729 NACHT: NACHT domain
Probab=99.00 E-value=1.8e-09 Score=99.44 Aligned_cols=111 Identities=24% Similarity=0.292 Sum_probs=78.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccc------ceeEEEEccc--------------------------------CCCC
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLISHEF------EGSSFLVDEV--------------------------------GCNT 83 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~--------------------------------~~~~ 83 (693)
|++.|+|.+|+||||+++.+++++.... ...+|+.... ....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 5899999999999999999998775553 2333433210 0357
Q ss_pred CeEEEEEecCCChhh---------hhHHh-cCCC-cCCCCceEEEEeCChHH---HHHcCCCceeeCCCCCHHHHHHHHH
Q 037483 84 KKVLLVIDDVVDIKQ---------LEYLV-GKRE-WFGSGSRIIITSRDEHL---LKTHGVDELCEPNGLNYDEALQLLN 149 (693)
Q Consensus 84 ~~~LlvlDdv~~~~~---------~~~l~-~~~~-~~~~~~~iliTtR~~~~---~~~~~~~~~~~l~~L~~~ea~~l~~ 149 (693)
+++++|+|++++... +..+. .... ...++++++||+|.... .........+++++|++++..+++.
T Consensus 81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLR 160 (166)
T ss_pred CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHH
Confidence 899999999976543 11122 1111 12578999999999765 3334445689999999999999997
Q ss_pred Hhc
Q 037483 150 TKA 152 (693)
Q Consensus 150 ~~~ 152 (693)
++.
T Consensus 161 ~~f 163 (166)
T PF05729_consen 161 KYF 163 (166)
T ss_pred HHh
Confidence 765
No 44
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.98 E-value=4.2e-10 Score=119.50 Aligned_cols=190 Identities=29% Similarity=0.384 Sum_probs=151.8
Q ss_pred EEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCcCCCC-CCCEEecCCCCCCccCCCCCCCCcccccccccccC
Q 037483 342 TLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSIELLT-GLELLNLNDCKNLLRLPSSIDGCFKLENVSETLGQ 420 (693)
Q Consensus 342 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~-~L~~L~L~~~~~~~~lp~~~~~~~~L~~lp~~l~~ 420 (693)
.+++..+...... ..+..++.++.|++.+|.++.++.....+. +|+.|++++| +++.+|..++.
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N--------------~i~~l~~~~~~ 161 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN--------------KIESLPSPLRN 161 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccccCccccccchhhccccccccc--------------chhhhhhhhhc
Confidence 5777776543333 334556889999999999999999888885 9999999998 45555566789
Q ss_pred CCCccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCeeeCCC
Q 037483 421 VEILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSY 500 (693)
Q Consensus 421 l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~ 500 (693)
+++|+.|++++|.+..+|...+.+++|+.|++++|.+..... .......|+.|.+++
T Consensus 162 l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~-----------------------~~~~~~~L~~l~~~~ 218 (394)
T COG4886 162 LPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPP-----------------------EIELLSALEELDLSN 218 (394)
T ss_pred cccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCch-----------------------hhhhhhhhhhhhhcC
Confidence 999999999999999999888899999999999998876532 223445699999999
Q ss_pred CCCCCCCCCccCCCCCCCCEEeCCCCCCcccCccccCCCCCCEEecccccceeeccCcccccccCCchhhhc
Q 037483 501 CGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPASISGLLNLKELELEDCALKLRKSDCTIIKCIDSLKLLVN 572 (693)
Q Consensus 501 n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~l~~l~~~~n 572 (693)
|.+.. .+..+.+++++..|.+.+|.+..++..++.+++|+.|++++|.+.-... ...+.++..+.+..|
T Consensus 219 N~~~~--~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 219 NSIIE--LLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGN 287 (394)
T ss_pred Cccee--cchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc-ccccCccCEEeccCc
Confidence 96423 7788899999999999999999989899999999999999999843222 555556665555443
No 45
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.95 E-value=1.7e-09 Score=106.70 Aligned_cols=160 Identities=19% Similarity=0.262 Sum_probs=103.9
Q ss_pred ccCCCCccccchhH---HHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc----------
Q 037483 13 SETLKKLVRIDSCL---EELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV---------- 79 (693)
Q Consensus 13 ~~~~~~~vGr~~~~---~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~---------- 79 (693)
|..-+++||.+..+ .-|..++. .+....+.+||+||+||||||+.++......|....-+....
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~---~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~a 96 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVE---AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEEA 96 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHh---cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHHHHHH
Confidence 45556777776555 23444444 336788999999999999999999998877776543333311
Q ss_pred ---CCCCCeEEEEEecCCC--hhhhhHHhcCCCcCCCCceEEE--EeCChHH---HHHcCCCceeeCCCCCHHHHHHHHH
Q 037483 80 ---GCNTKKVLLVIDDVVD--IKQLEYLVGKREWFGSGSRIII--TSRDEHL---LKTHGVDELCEPNGLNYDEALQLLN 149 (693)
Q Consensus 80 ---~~~~~~~LlvlDdv~~--~~~~~~l~~~~~~~~~~~~ili--TtR~~~~---~~~~~~~~~~~l~~L~~~ea~~l~~ 149 (693)
...+++.++++|.|+. ..|-+.|++.. ..|..|+| ||-++.. ........++++++|+.++..+++.
T Consensus 97 ~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ 173 (436)
T COG2256 97 RKNRLLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLK 173 (436)
T ss_pred HHHHhcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHH
Confidence 2458999999999965 45566676654 47777777 5555421 1222346789999999999999998
Q ss_pred HhcccCCCC-----chHHHHHHHHHHHHhCCCch
Q 037483 150 TKAFKTHKP-----LEECAKLSERVPQYAGGLPL 178 (693)
Q Consensus 150 ~~~~~~~~~-----~~~~~~~~~~i~~~~~g~Pl 178 (693)
+.+...... ..-..+....+++.++|=-.
T Consensus 174 ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 174 RALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred HHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 843211111 10122344557777777543
No 46
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.95 E-value=3e-10 Score=112.83 Aligned_cols=250 Identities=20% Similarity=0.254 Sum_probs=174.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc--------------------------------CCCCCeEE
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV--------------------------------GCNTKKVL 87 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~--------------------------------~~~~~~~L 87 (693)
..|.+.++|.|||||||++.++.. ++..|....|+.+.. ....++.+
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~~~~~~~~~~~~rr~l 91 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDSAVDTLVRRIGDRRAL 91 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHhHHHHHhhcccccccchHHHHHHHHHHhhhhHH
Confidence 468999999999999999999999 888998888776622 14568899
Q ss_pred EEEecCCChhh-hhHHhcCCCcCCCCceEEEEeCChHHHHHcCCCceeeCCCCCHH-HHHHHHHHhcccCCC---CchHH
Q 037483 88 LVIDDVVDIKQ-LEYLVGKREWFGSGSRIIITSRDEHLLKTHGVDELCEPNGLNYD-EALQLLNTKAFKTHK---PLEEC 162 (693)
Q Consensus 88 lvlDdv~~~~~-~~~l~~~~~~~~~~~~iliTtR~~~~~~~~~~~~~~~l~~L~~~-ea~~l~~~~~~~~~~---~~~~~ 162 (693)
+|+||...... ...+...+....+.-.|+.|+|+... ...+..+.++.|+.. ++.++|...+..... .....
T Consensus 92 lvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~~ 168 (414)
T COG3903 92 LVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDDN 168 (414)
T ss_pred HHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccceeecCCc
Confidence 99999876543 33333334434677789999998532 344567788887765 788898777632221 12334
Q ss_pred HHHHHHHHHHhCCCchhHHHHhhhhcCCChHHHHHHHH----HhccC------CCchHHHHHHHhhccCcHhhHhHHhhh
Q 037483 163 AKLSERVPQYAGGLPLALKVLGSFLNGRSTDQWRSTLE----RLKRD------PPNKIMSILQISFDGLQDSEKKIFLDV 232 (693)
Q Consensus 163 ~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~w~~~l~----~l~~~------~~~~~~~~l~~s~~~L~~~~~~~~~~l 232 (693)
...+.+|.++..|.|++|..+++..+.....+..+.+. .++.. ........+..||.-|..-++-.|..+
T Consensus 169 ~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~~~~rL 248 (414)
T COG3903 169 AAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERALFGRL 248 (414)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHHHhcch
Confidence 55678899999999999999999988766554443333 23222 124566788899999999999999999
Q ss_pred hcccCCCCHHHHHHHHHHcCC-----CccchhhhhhcCCcEEEeC---CCcEehhHHHHHHHHHHhhcc
Q 037483 233 ACFFKWKSREYVTKILEACGF-----SPVIGIEVLIEKSLLIVDE---DNRLQMHDLLQELGHQIVQRQ 293 (693)
Q Consensus 233 a~f~~~~~~~~l~~~~~~~~~-----~~~~~l~~L~~~sLi~~~~---~~~~~~H~lv~~~~~~~~~~~ 293 (693)
+.|...+..+........... .....+..+++++++.... ..+|+.-+-.+.|+.+.+.+.
T Consensus 249 a~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r~ 317 (414)
T COG3903 249 AVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHRS 317 (414)
T ss_pred hhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 999888877733322221111 1123366788999987654 336777777888877776554
No 47
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.94 E-value=3e-08 Score=99.27 Aligned_cols=161 Identities=21% Similarity=0.277 Sum_probs=97.6
Q ss_pred HHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc--------------C-----------
Q 037483 26 LEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV--------------G----------- 80 (693)
Q Consensus 26 ~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~--------------~----------- 80 (693)
.++....+...-..+.++++|+|++|+||||+++.+++.+...--..+++.... |
T Consensus 28 ~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~ 107 (269)
T TIGR03015 28 HKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAAL 107 (269)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHH
Confidence 344444443221223568999999999999999999987652211122322100 1
Q ss_pred ------------CCCCeEEEEEecCCChh--hhhHHhc---CCCcCCCCceEEEEeCChHHHHHc----------CCCce
Q 037483 81 ------------CNTKKVLLVIDDVVDIK--QLEYLVG---KREWFGSGSRIIITSRDEHLLKTH----------GVDEL 133 (693)
Q Consensus 81 ------------~~~~~~LlvlDdv~~~~--~~~~l~~---~~~~~~~~~~iliTtR~~~~~~~~----------~~~~~ 133 (693)
..+++.++|+||++... .++.+.. ..........|++|.... ..... .....
T Consensus 108 ~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~ 186 (269)
T TIGR03015 108 LRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIAS 186 (269)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeee
Confidence 25678999999998754 3444332 111112233455665543 22111 11346
Q ss_pred eeCCCCCHHHHHHHHHHhcccCCC--CchHHHHHHHHHHHHhCCCchhHHHHhhhh
Q 037483 134 CEPNGLNYDEALQLLNTKAFKTHK--PLEECAKLSERVPQYAGGLPLALKVLGSFL 187 (693)
Q Consensus 134 ~~l~~L~~~ea~~l~~~~~~~~~~--~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 187 (693)
+++++++.+|..+++...+..... ...-..+..+.|++.++|.|..|..++..+
T Consensus 187 ~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 187 CHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred eeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 789999999999999877532111 111234568889999999999999998765
No 48
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.93 E-value=1.5e-10 Score=111.58 Aligned_cols=198 Identities=22% Similarity=0.208 Sum_probs=144.3
Q ss_pred ccccccccCCCCCCcEEEcCCCCCcccch----hhhcCccccceeccCCcCceee--------------cCCcCCCCCCC
Q 037483 327 LSSLLISLSSLKCLRTLELSGCSKLKRFL----EIVASMEDLSELYLDGTFITKL--------------PLSIELLTGLE 388 (693)
Q Consensus 327 L~~l~~~l~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~L~~~~l~~l--------------~~~~~~l~~L~ 388 (693)
|..+...+..+++|++|+||.|.+....+ +.+..+..|++|+|.+|.+... ...+.+-++|+
T Consensus 81 L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lr 160 (382)
T KOG1909|consen 81 LKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLR 160 (382)
T ss_pred HHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceE
Confidence 44445567778899999999998665433 4567789999999999988732 12345667899
Q ss_pred EEecCCCCCCccCCCCCCCCcccccccccccCCCCccEEecCCCccccC-----CCccccCCCCCEEEccCCCCCCCCCC
Q 037483 389 LLNLNDCKNLLRLPSSIDGCFKLENVSETLGQVEILEELDISGTTIREP-----PSSIFAIKNLKKLSFSGCSGPPSSAS 463 (693)
Q Consensus 389 ~L~L~~~~~~~~lp~~~~~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~l-----p~~~~~l~~L~~L~l~~~~~~~~~~~ 463 (693)
++....|++-.. .-+.+...+...+.|+.+.++.|.|..- -..+..+++|+.|+|..|.++...
T Consensus 161 v~i~~rNrlen~---------ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~eg-- 229 (382)
T KOG1909|consen 161 VFICGRNRLENG---------GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEG-- 229 (382)
T ss_pred EEEeeccccccc---------cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHH--
Confidence 999988853221 1123334566778999999999987621 345778999999999999765442
Q ss_pred ccccccccccCCCCchhhhhhcccCCCCcCCeeeCCCCCCCCCCCC---ccC-CCCCCCCEEeCCCCCCc-----ccCcc
Q 037483 464 WHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIP---NDI-GNLCSLKELYLSKNNFV-----TLPAS 534 (693)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p---~~l-~~l~~L~~L~L~~n~l~-----~lp~~ 534 (693)
...+...++.+++|+.|++++|.+.+...- ..+ ...++|+.|.+.+|.++ .+...
T Consensus 230 ----------------s~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~ 293 (382)
T KOG1909|consen 230 ----------------SVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAAC 293 (382)
T ss_pred ----------------HHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHH
Confidence 223444678889999999999998654321 112 34789999999999998 33445
Q ss_pred ccCCCCCCEEecccccc
Q 037483 535 ISGLLNLKELELEDCAL 551 (693)
Q Consensus 535 l~~l~~L~~L~L~~n~~ 551 (693)
+...+.|+.|+|++|++
T Consensus 294 ~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 294 MAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhcchhhHHhcCCcccc
Confidence 66789999999999988
No 49
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.83 E-value=6e-08 Score=94.31 Aligned_cols=166 Identities=18% Similarity=0.158 Sum_probs=102.1
Q ss_pred CCCccc--cchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc---------CCCCC
Q 037483 16 LKKLVR--IDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV---------GCNTK 84 (693)
Q Consensus 16 ~~~~vG--r~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~---------~~~~~ 84 (693)
-++|++ .+..++++.+++.. ...+.+.|+|++|+|||++|+.++++.........++.... ..-.+
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~~---~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 90 (226)
T TIGR03420 14 FDNFYAGGNAELLAALRQLAAG---KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQADPEVLEGLEQ 90 (226)
T ss_pred hcCcCcCCcHHHHHHHHHHHhc---CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhHHHHHhhccc
Confidence 345663 44466777777542 24578999999999999999999987654444444554311 11122
Q ss_pred eEEEEEecCCChhh----hhHHhcCCCc-CCCCceEEEEeCChH---------HHHHcCCCceeeCCCCCHHHHHHHHHH
Q 037483 85 KVLLVIDDVVDIKQ----LEYLVGKREW-FGSGSRIIITSRDEH---------LLKTHGVDELCEPNGLNYDEALQLLNT 150 (693)
Q Consensus 85 ~~LlvlDdv~~~~~----~~~l~~~~~~-~~~~~~iliTtR~~~---------~~~~~~~~~~~~l~~L~~~ea~~l~~~ 150 (693)
.-++|+||++.... .+.+...+.. ...+..+|+|++... +.........++++++++++...++..
T Consensus 91 ~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~ 170 (226)
T TIGR03420 91 ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQS 170 (226)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHH
Confidence 34899999976532 2233322211 123457888887532 222333345789999999999999887
Q ss_pred hcccCCCCchHHHHHHHHHHHHhCCCchhHHHHhhh
Q 037483 151 KAFKTHKPLEECAKLSERVPQYAGGLPLALKVLGSF 186 (693)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~ 186 (693)
.+-..... -..+..+.+++.+.|+|..+..+...
T Consensus 171 ~~~~~~~~--~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 171 RAARRGLQ--LPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred HHHHcCCC--CCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 65222111 12234566777889998877766543
No 50
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.82 E-value=2.9e-08 Score=91.73 Aligned_cols=170 Identities=18% Similarity=0.161 Sum_probs=99.8
Q ss_pred ccCCCCccccchhHHHHHHHHhc--CCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEcc----c-------
Q 037483 13 SETLKKLVRIDSCLEELRSLMDE--GLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDE----V------- 79 (693)
Q Consensus 13 ~~~~~~~vGr~~~~~~l~~~l~~--~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~----~------- 79 (693)
|..-++|||.+..++.+.-++.. ..++...-+.+||+||+||||||.-+++.....|.. .... .
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~---~sg~~i~k~~dl~~il 96 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKI---TSGPAIEKAGDLAAIL 96 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEE---EECCC--SCHHHHHHH
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeEe---ccchhhhhHHHHHHHH
Confidence 55668999999999988766654 223357789999999999999999999988776642 2221 0
Q ss_pred -CCCCCeEEEEEecCCChh--hhhHHhcCCCcC--------CC-----------CceEEEEeCChHHHHHcCC--Cceee
Q 037483 80 -GCNTKKVLLVIDDVVDIK--QLEYLVGKREWF--------GS-----------GSRIIITSRDEHLLKTHGV--DELCE 135 (693)
Q Consensus 80 -~~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~--------~~-----------~~~iliTtR~~~~~~~~~~--~~~~~ 135 (693)
.+ .++-++.+|.++... +-+.|.+....+ ++ -+-|=.|||...+...... .-+.+
T Consensus 97 ~~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~ 175 (233)
T PF05496_consen 97 TNL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLR 175 (233)
T ss_dssp HT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE
T ss_pred Hhc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecc
Confidence 23 345678889998653 223333222111 22 2345568887544433322 23457
Q ss_pred CCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHHhhhhc
Q 037483 136 PNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVLGSFLN 188 (693)
Q Consensus 136 l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~ 188 (693)
++..+.+|-.+++.+.+..-... -..+.+.+|++++.|-|....-+-...+
T Consensus 176 l~~Y~~~el~~Iv~r~a~~l~i~--i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 176 LEFYSEEELAKIVKRSARILNIE--IDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp ----THHHHHHHHHHCCHCTT-E--E-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred hhcCCHHHHHHHHHHHHHHhCCC--cCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 99999999999999887433332 3345688999999999976555554443
No 51
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.80 E-value=3.1e-08 Score=104.84 Aligned_cols=167 Identities=22% Similarity=0.276 Sum_probs=105.7
Q ss_pred ccCCCCccccchhHHH---HHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc----------
Q 037483 13 SETLKKLVRIDSCLEE---LRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV---------- 79 (693)
Q Consensus 13 ~~~~~~~vGr~~~~~~---l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~---------- 79 (693)
|...+++||++..+.. +.+++... ....+.|+|++|+||||+|+.+++.....|..........
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~~---~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~~~~ir~ii~~~ 84 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEAG---RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSGVKDLREVIEEA 84 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHcC---CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccccHHHHHHHHHHH
Confidence 3445689999988776 77777643 4567889999999999999999987655442211111100
Q ss_pred ---CCCCCeEEEEEecCCCh--hhhhHHhcCCCcCCCCceEEEE--eCChH--HH-HHcCCCceeeCCCCCHHHHHHHHH
Q 037483 80 ---GCNTKKVLLVIDDVVDI--KQLEYLVGKREWFGSGSRIIIT--SRDEH--LL-KTHGVDELCEPNGLNYDEALQLLN 149 (693)
Q Consensus 80 ---~~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliT--tR~~~--~~-~~~~~~~~~~l~~L~~~ea~~l~~ 149 (693)
...+++.++++|+++.. .+.+.+...+. .+..++|. |.+.. +. ........+.+.+++.++..+++.
T Consensus 85 ~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~ 161 (413)
T PRK13342 85 RQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLK 161 (413)
T ss_pred HHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHH
Confidence 12347789999999865 34455554433 35555553 34322 11 112224678999999999999998
Q ss_pred HhcccCCCCc-hHHHHHHHHHHHHhCCCchhHHHHhh
Q 037483 150 TKAFKTHKPL-EECAKLSERVPQYAGGLPLALKVLGS 185 (693)
Q Consensus 150 ~~~~~~~~~~-~~~~~~~~~i~~~~~g~Plal~~~~~ 185 (693)
+.+....... .-..+..+.+++.++|.+..+..+..
T Consensus 162 ~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 162 RALEDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred HHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 8653211100 12234567789999999977655443
No 52
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.79 E-value=3.2e-09 Score=120.42 Aligned_cols=233 Identities=30% Similarity=0.325 Sum_probs=139.1
Q ss_pred cCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCccccc
Q 037483 334 LSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLEN 413 (693)
Q Consensus 334 l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~ 413 (693)
|..++.|++|||++|...+.+|+.++.+-+||+|+++++.+..+|.++.+|..|.+||+..+.....+|.....+++|+.
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~ 646 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRV 646 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccE
Confidence 77899999999999999999999999999999999999999999999999999999999998877777766666677764
Q ss_pred cc-------------ccccCCCCccEEecCC--------------------------CccccCCCccccCCCCCEEEccC
Q 037483 414 VS-------------ETLGQVEILEELDISG--------------------------TTIREPPSSIFAIKNLKKLSFSG 454 (693)
Q Consensus 414 lp-------------~~l~~l~~L~~L~l~~--------------------------n~i~~lp~~~~~l~~L~~L~l~~ 454 (693)
+. ..+.++.+|+.+.... +.....+..+..+.+|+.|.+.+
T Consensus 647 L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~ 726 (889)
T KOG4658|consen 647 LRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILD 726 (889)
T ss_pred EEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEc
Confidence 42 1123333343333322 22223345667788899999988
Q ss_pred CCCCCCCCCcccccc----c-cccCCCCchhh--hhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCC
Q 037483 455 CSGPPSSASWHLHFP----F-NLMGKSLYPVA--LMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNN 527 (693)
Q Consensus 455 ~~~~~~~~~~~~~~~----~-~~~~~~~~~~~--~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~ 527 (693)
|........+..... + ++......... ..+....-.++|+.|.+..|+..+. +......+..++++.+..+.
T Consensus 727 ~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~-~i~~~k~~~~l~~~i~~f~~ 805 (889)
T KOG4658|consen 727 CGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLED-IIPKLKALLELKELILPFNK 805 (889)
T ss_pred CCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEeccccccc-CCCHHHHhhhcccEEecccc
Confidence 887643221110000 0 00000000000 0000112235677777777765332 22333444455555555555
Q ss_pred CcccC--ccccCCCCCCEEecccccc-eeeccCcccccccCCc
Q 037483 528 FVTLP--ASISGLLNLKELELEDCAL-KLRKSDCTIIKCIDSL 567 (693)
Q Consensus 528 l~~lp--~~l~~l~~L~~L~L~~n~~-~~~~~~~~~l~~l~~l 567 (693)
+..++ ...+.++++..+.+.+=.+ ...+..|+.+..+|.+
T Consensus 806 ~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~ 848 (889)
T KOG4658|consen 806 LEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLL 848 (889)
T ss_pred cccceeeecCCCCceeEecccCccchhheehhcCcccccCccc
Confidence 54332 2344455555544444333 3444556666655554
No 53
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.77 E-value=6e-07 Score=93.23 Aligned_cols=164 Identities=13% Similarity=0.081 Sum_probs=109.8
Q ss_pred cCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc---------------------ccee
Q 037483 14 ETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHE---------------------FEGS 72 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---------------------f~~~ 72 (693)
..-.+++|.+..++.+...+..+. -.+.+.++|++|+||||+|+.+++.+.-. +...
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~~--~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~ 90 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLGR--IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDL 90 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcCC--CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 444689999999999999887532 35788999999999999999999875311 1122
Q ss_pred EEEEcc--c---------------CCCCCeEEEEEecCCChh--hhhHHhcCCCcCCCCceEEEEeCCh-HHHHH-cCCC
Q 037483 73 SFLVDE--V---------------GCNTKKVLLVIDDVVDIK--QLEYLVGKREWFGSGSRIIITSRDE-HLLKT-HGVD 131 (693)
Q Consensus 73 ~~~~~~--~---------------~~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTtR~~-~~~~~-~~~~ 131 (693)
..+... . ...+++-++|+|+++... .++.+...+....+..++|++|.+. .+... .+..
T Consensus 91 ~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc 170 (363)
T PRK14961 91 IEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRC 170 (363)
T ss_pred EEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhc
Confidence 222211 0 123456799999998765 3566666655555666777766553 33322 2234
Q ss_pred ceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHH
Q 037483 132 ELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALK 181 (693)
Q Consensus 132 ~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 181 (693)
..+++.+++.++..+++...+-...... ..+.+..|++.++|.|..+.
T Consensus 171 ~~~~~~~l~~~el~~~L~~~~~~~g~~i--~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 171 LQFKLKIISEEKIFNFLKYILIKESIDT--DEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred eEEeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 6889999999999999887663322211 22346678889999886443
No 54
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.75 E-value=6e-07 Score=92.27 Aligned_cols=165 Identities=16% Similarity=0.090 Sum_probs=111.2
Q ss_pred CccCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHh-cc----------------------
Q 037483 12 KSETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLIS-HE---------------------- 68 (693)
Q Consensus 12 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~-~~---------------------- 68 (693)
.|....+++|.++..+.|.+.+..+. -.+.+.++|+.|+||+++|..+++.+- +.
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~r--l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~ 91 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSGR--LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPV 91 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcCC--CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChH
Confidence 45566789999999999999988643 357899999999999999999988642 11
Q ss_pred --------cceeEEEEc---cc-----------------------CCCCCeEEEEEecCCChhh--hhHHhcCCCcCCCC
Q 037483 69 --------FEGSSFLVD---EV-----------------------GCNTKKVLLVIDDVVDIKQ--LEYLVGKREWFGSG 112 (693)
Q Consensus 69 --------f~~~~~~~~---~~-----------------------~~~~~~~LlvlDdv~~~~~--~~~l~~~~~~~~~~ 112 (693)
.+...++.. +. ...+.+.++|+||++..+. ...+...+....++
T Consensus 92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred HHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 122233321 10 1345677999999976543 45555555444456
Q ss_pred ceEEEEeCCh-HHHHH-cCCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHHh
Q 037483 113 SRIIITSRDE-HLLKT-HGVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVLG 184 (693)
Q Consensus 113 ~~iliTtR~~-~~~~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 184 (693)
+.+|++|.+. .+... ......+.+.+++.++..+++...... . .+ +....+++.++|.|+....+.
T Consensus 172 ~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~--~-~~---~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD--L-PD---DPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred eEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc--C-CH---HHHHHHHHHcCCCHHHHHHHh
Confidence 6677766664 33322 233568999999999999999876421 1 11 112568899999998655543
No 55
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.75 E-value=5.2e-07 Score=97.89 Aligned_cols=165 Identities=16% Similarity=0.131 Sum_probs=112.5
Q ss_pred cCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhc---------------------cccee
Q 037483 14 ETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISH---------------------EFEGS 72 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~---------------------~f~~~ 72 (693)
..-+++||.+..++.|..++..+. -.+.+.++|..|+||||+|+.+++.+-. .|...
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~gR--L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDGGR--LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhcCC--CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 344689999999999999987542 2567789999999999999999876521 22333
Q ss_pred EEEEcc--c---------------CCCCCeEEEEEecCCChhh--hhHHhcCCCcCCCCceEEEEeCChH-HHHH-cCCC
Q 037483 73 SFLVDE--V---------------GCNTKKVLLVIDDVVDIKQ--LEYLVGKREWFGSGSRIIITSRDEH-LLKT-HGVD 131 (693)
Q Consensus 73 ~~~~~~--~---------------~~~~~~~LlvlDdv~~~~~--~~~l~~~~~~~~~~~~iliTtR~~~-~~~~-~~~~ 131 (693)
+.+... . ...++.-++|||+++.... +..|+..+....+..++|++|.+.. +... ....
T Consensus 91 iEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRC 170 (830)
T PRK07003 91 VEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC 170 (830)
T ss_pred EEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhhe
Confidence 333221 1 1234566899999987654 6667666655566788888887753 2222 2335
Q ss_pred ceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCch-hHHH
Q 037483 132 ELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPL-ALKV 182 (693)
Q Consensus 132 ~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~ 182 (693)
..+++..++.++..+.+.+.+....... ..+....|++.++|... |+..
T Consensus 171 q~f~Fk~Ls~eeIv~~L~~Il~~EgI~i--d~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 171 LQFNLKQMPAGHIVSHLERILGEERIAF--EPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred EEEecCCcCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 6899999999999999988764332221 23446778888988653 4444
No 56
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.72 E-value=6.7e-07 Score=95.82 Aligned_cols=164 Identities=15% Similarity=0.078 Sum_probs=108.6
Q ss_pred cCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhc--ccc------------------eeE
Q 037483 14 ETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISH--EFE------------------GSS 73 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~--~f~------------------~~~ 73 (693)
..-++++|.+...+.|..++.... -.+.+.++|++|+||||+|+.+++.+.. .+. ...
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~~~--l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~ 88 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQGR--LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVL 88 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceE
Confidence 334679999999999999988643 3577899999999999999999987632 111 122
Q ss_pred EEEcc--c---------------CCCCCeEEEEEecCCCh--hhhhHHhcCCCcCCCCceEEEEeCC-hHHHHHc-CCCc
Q 037483 74 FLVDE--V---------------GCNTKKVLLVIDDVVDI--KQLEYLVGKREWFGSGSRIIITSRD-EHLLKTH-GVDE 132 (693)
Q Consensus 74 ~~~~~--~---------------~~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTtR~-~~~~~~~-~~~~ 132 (693)
++... . ...+++-++|+|+++.. ..++.+...+....+.+.+|++|.. ..+.... ....
T Consensus 89 el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~ 168 (504)
T PRK14963 89 EIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQ 168 (504)
T ss_pred EecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceE
Confidence 22211 0 13346678999999765 3466666655544455565555543 3332222 3356
Q ss_pred eeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHH
Q 037483 133 LCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALK 181 (693)
Q Consensus 133 ~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 181 (693)
.+++.+++.++..+++.+.+-...... ..+....|++.++|.+.-+.
T Consensus 169 ~~~f~~ls~~el~~~L~~i~~~egi~i--~~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 169 HFRFRRLTEEEIAGKLRRLLEAEGREA--EPEALQLVARLADGAMRDAE 215 (504)
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 899999999999999988764333221 23456779999999886543
No 57
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.72 E-value=4.9e-07 Score=93.81 Aligned_cols=165 Identities=19% Similarity=0.154 Sum_probs=103.6
Q ss_pred ccCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccc-ce-eEEEEccc-----------
Q 037483 13 SETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEF-EG-SSFLVDEV----------- 79 (693)
Q Consensus 13 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~-~~~~~~~~----------- 79 (693)
|..-++++|+++.++.+.+++..+ ..+.+.++|++|+||||+|+++++.+..+. .. ...+....
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~~---~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDSP---NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVE 87 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhCC---CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhc
Confidence 333467999999999999988753 334578999999999999999998764321 11 11211100
Q ss_pred ---------------------------------CCCCCeEEEEEecCCChhh--hhHHhcCCCcCCCCceEEEEeCCh-H
Q 037483 80 ---------------------------------GCNTKKVLLVIDDVVDIKQ--LEYLVGKREWFGSGSRIIITSRDE-H 123 (693)
Q Consensus 80 ---------------------------------~~~~~~~LlvlDdv~~~~~--~~~l~~~~~~~~~~~~iliTtR~~-~ 123 (693)
.....+-++|+||++.... .+.+...+....+.+++|+|+... .
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 88 DPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred CcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 0113345899999976532 333433333334567788777543 2
Q ss_pred HHHH-cCCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHH
Q 037483 124 LLKT-HGVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKV 182 (693)
Q Consensus 124 ~~~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 182 (693)
+... ......+++.+++.++..+++...+-..... -..+....+++.++|.+..+..
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 2221 1234578889999999999998876332222 1234567788888888765543
No 58
>PRK04195 replication factor C large subunit; Provisional
Probab=98.70 E-value=3.2e-07 Score=99.17 Aligned_cols=165 Identities=18% Similarity=0.186 Sum_probs=106.1
Q ss_pred ccCCCCccccchhHHHHHHHHhcCC-CCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc------------
Q 037483 13 SETLKKLVRIDSCLEELRSLMDEGL-NDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV------------ 79 (693)
Q Consensus 13 ~~~~~~~vGr~~~~~~l~~~l~~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~------------ 79 (693)
|....+++|.+..++++.+|+..-. +...+.+.|+|++|+||||+|+++++.+. |+...+-....
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~ielnasd~r~~~~i~~~i~~ 87 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEVIELNASDQRTADVIERVAGE 87 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCEEEEcccccccHHHHHHHHHH
Confidence 4445679999999999999997532 22368899999999999999999998763 22222211100
Q ss_pred -----CCC-CCeEEEEEecCCChhh------hhHHhcCCCcCCCCceEEEEeCChH-HH--HHcCCCceeeCCCCCHHHH
Q 037483 80 -----GCN-TKKVLLVIDDVVDIKQ------LEYLVGKREWFGSGSRIIITSRDEH-LL--KTHGVDELCEPNGLNYDEA 144 (693)
Q Consensus 80 -----~~~-~~~~LlvlDdv~~~~~------~~~l~~~~~~~~~~~~iliTtR~~~-~~--~~~~~~~~~~l~~L~~~ea 144 (693)
... .++-+||+|+++.... +..+...+. ..+..||+|+.+.. .. ........+++.+++.++.
T Consensus 88 ~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i 165 (482)
T PRK04195 88 AATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSI 165 (482)
T ss_pred hhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHhccceEEEecCCCHHHH
Confidence 122 3678999999976532 344433332 23455666664421 11 1112346789999999999
Q ss_pred HHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHH
Q 037483 145 LQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVL 183 (693)
Q Consensus 145 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 183 (693)
...+...+....... ..+....|++.++|....+...
T Consensus 166 ~~~L~~i~~~egi~i--~~eaL~~Ia~~s~GDlR~ain~ 202 (482)
T PRK04195 166 VPVLKRICRKEGIEC--DDEALKEIAERSGGDLRSAIND 202 (482)
T ss_pred HHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 998888764333222 2345778888999877655443
No 59
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.69 E-value=2.3e-07 Score=90.03 Aligned_cols=170 Identities=18% Similarity=0.157 Sum_probs=97.6
Q ss_pred cCCCCcc-ccchhH-HHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc-----CCCCCeE
Q 037483 14 ETLKKLV-RIDSCL-EELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV-----GCNTKKV 86 (693)
Q Consensus 14 ~~~~~~v-Gr~~~~-~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~-----~~~~~~~ 86 (693)
..-++|+ |..+.. ..+.++.... ...+.+.|+|.+|+|||+||+++++.....-....++.... ......-
T Consensus 15 ~~~d~f~~~~~~~~~~~l~~~~~~~--~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 92 (227)
T PRK08903 15 PTFDNFVAGENAELVARLRELAAGP--VADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLAFDFDPEAE 92 (227)
T ss_pred hhhcccccCCcHHHHHHHHHHHhcc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHHHhhcccCC
Confidence 3345555 554444 4444444421 23567899999999999999999987643323334444311 1222344
Q ss_pred EEEEecCCChh--hhhHHhcCCCcC-CCCc-eEEEEeCChHH--------HHHcCCCceeeCCCCCHHHHHHHHHHhccc
Q 037483 87 LLVIDDVVDIK--QLEYLVGKREWF-GSGS-RIIITSRDEHL--------LKTHGVDELCEPNGLNYDEALQLLNTKAFK 154 (693)
Q Consensus 87 LlvlDdv~~~~--~~~~l~~~~~~~-~~~~-~iliTtR~~~~--------~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~ 154 (693)
++|+||++... +.+.+...+... ..+. .+|+|++.... .........++++++++++-.+++.+.+-.
T Consensus 93 ~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~ 172 (227)
T PRK08903 93 LYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAE 172 (227)
T ss_pred EEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHH
Confidence 78999997542 222232222111 2333 46677665321 112233468899999998877777665422
Q ss_pred CCCCchHHHHHHHHHHHHhCCCchhHHHHhhhh
Q 037483 155 THKPLEECAKLSERVPQYAGGLPLALKVLGSFL 187 (693)
Q Consensus 155 ~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 187 (693)
.... -..+..+.+++...|++..+..+...+
T Consensus 173 ~~v~--l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 173 RGLQ--LADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred cCCC--CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 2211 123456677778899988877666544
No 60
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=9.4e-07 Score=94.92 Aligned_cols=164 Identities=17% Similarity=0.115 Sum_probs=110.8
Q ss_pred cCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhc---------------------cccee
Q 037483 14 ETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISH---------------------EFEGS 72 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~---------------------~f~~~ 72 (693)
..-.++||.+...+.|..++..+. -.+.+.++|+.|+||||+|+.+++.+-- .+...
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~gr--l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDv 89 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERGR--LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDL 89 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCce
Confidence 444689999999999999998543 2578899999999999999999886521 12223
Q ss_pred EEEEcc--c---------------CCCCCeEEEEEecCCChh--hhhHHhcCCCcCCCCceEEEEeCChH-HHHH-cCCC
Q 037483 73 SFLVDE--V---------------GCNTKKVLLVIDDVVDIK--QLEYLVGKREWFGSGSRIIITSRDEH-LLKT-HGVD 131 (693)
Q Consensus 73 ~~~~~~--~---------------~~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTtR~~~-~~~~-~~~~ 131 (693)
+.+... . ...++.-++|+|+++... ....+...+.....+.++|++|.+.. +... ....
T Consensus 90 iEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRC 169 (702)
T PRK14960 90 IEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRC 169 (702)
T ss_pred EEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhh
Confidence 333221 0 133566789999998653 45556655554456677777776642 2211 2335
Q ss_pred ceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHH
Q 037483 132 ELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALK 181 (693)
Q Consensus 132 ~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 181 (693)
..+++.+++.++..+.+.+.+-..... -..+....|++.++|.+..+.
T Consensus 170 q~feFkpLs~eEI~k~L~~Il~kEgI~--id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 170 LQFTLRPLAVDEITKHLGAILEKEQIA--ADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred heeeccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 688999999999999998876433222 223346778889999875444
No 61
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.68 E-value=9.4e-07 Score=90.96 Aligned_cols=162 Identities=17% Similarity=0.188 Sum_probs=103.5
Q ss_pred cCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc-cceeEEEEc----cc---------
Q 037483 14 ETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHE-FEGSSFLVD----EV--------- 79 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~----~~--------- 79 (693)
..-.+++|+++.++.+.+++... ..+.+.|+|.+|+||||+|+.+++.+... +.. .++.. ..
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~~---~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~-~~i~~~~~~~~~~~~~~~~i 89 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKEK---NMPHLLFAGPPGTGKTTAALALARELYGEDWRE-NFLELNASDERGIDVIRNKI 89 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhCC---CCCeEEEECCCCCCHHHHHHHHHHHHcCCcccc-ceEEeccccccchHHHHHHH
Confidence 34467999999999999998753 23457999999999999999999875322 211 11111 00
Q ss_pred -------CCC-CCeEEEEEecCCChh--hhhHHhcCCCcCCCCceEEEEeCCh-HHHH-HcCCCceeeCCCCCHHHHHHH
Q 037483 80 -------GCN-TKKVLLVIDDVVDIK--QLEYLVGKREWFGSGSRIIITSRDE-HLLK-THGVDELCEPNGLNYDEALQL 147 (693)
Q Consensus 80 -------~~~-~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTtR~~-~~~~-~~~~~~~~~l~~L~~~ea~~l 147 (693)
... ..+-++++|+++... ..+.+...+....+.+++|+++... .+.. .......++++++++++...+
T Consensus 90 ~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~ 169 (319)
T PRK00440 90 KEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAER 169 (319)
T ss_pred HHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHH
Confidence 011 346689999997543 2344544444445567777776432 1111 112234689999999999999
Q ss_pred HHHhcccCCCCchHHHHHHHHHHHHhCCCchhHH
Q 037483 148 LNTKAFKTHKPLEECAKLSERVPQYAGGLPLALK 181 (693)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 181 (693)
+...+-...... ..+....+++.++|.+.-+.
T Consensus 170 l~~~~~~~~~~i--~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 170 LRYIAENEGIEI--TDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred HHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 888774333221 23346778889999886543
No 62
>PRK09087 hypothetical protein; Validated
Probab=98.66 E-value=1.3e-07 Score=90.66 Aligned_cols=136 Identities=13% Similarity=0.032 Sum_probs=85.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEcc-cC----CCCCeEEEEEecCCChhh-hhHHhcCCCc-CCCCc
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDE-VG----CNTKKVLLVIDDVVDIKQ-LEYLVGKREW-FGSGS 113 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~-~~----~~~~~~LlvlDdv~~~~~-~~~l~~~~~~-~~~~~ 113 (693)
.+.+.|||++|+|||+|++.+++.... .++... .+ ..-..-++++||++.... -+.+...++. ...|.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~-----~~i~~~~~~~~~~~~~~~~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~ 118 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDA-----LLIHPNEIGSDAANAAAEGPVLIEDIDAGGFDETGLFHLINSVRQAGT 118 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCC-----EEecHHHcchHHHHhhhcCeEEEECCCCCCCCHHHHHHHHHHHHhCCC
Confidence 456899999999999999998875422 244331 11 000123788899965321 1223222211 13577
Q ss_pred eEEEEeCC---------hHHHHHcCCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHH
Q 037483 114 RIIITSRD---------EHLLKTHGVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVL 183 (693)
Q Consensus 114 ~iliTtR~---------~~~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 183 (693)
.+|+|++. +.+...+....+++++++++++-.+++.+.+-..... -.++...-|++++.|...++..+
T Consensus 119 ~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~--l~~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 119 SLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLY--VDPHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred eEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHhhhhHHHHHHH
Confidence 89999874 3355555667789999999999999999887432211 12334556777777766655543
No 63
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.66 E-value=4.7e-09 Score=101.34 Aligned_cols=189 Identities=22% Similarity=0.268 Sum_probs=108.8
Q ss_pred CCCCCcEEEcCCCCCccc----chhhhcCccccceeccCCcCce----eecCC-------cCCCCCCCEEecCCCCCCcc
Q 037483 336 SLKCLRTLELSGCSKLKR----FLEIVASMEDLSELYLDGTFIT----KLPLS-------IELLTGLELLNLNDCKNLLR 400 (693)
Q Consensus 336 ~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~~~l~----~l~~~-------~~~l~~L~~L~L~~~~~~~~ 400 (693)
.+..++.++|++|.+... +...+.+.++|+..++++-... .+|+. +..+++|++|+||+|-+-..
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 355677888888765443 3445666677887777763221 33332 34566888888888754332
Q ss_pred CCCCCCCCcccccccccccCCCCccEEecCCCccccC--------------CCccccCCCCCEEEccCCCCCCCCCCccc
Q 037483 401 LPSSIDGCFKLENVSETLGQVEILEELDISGTTIREP--------------PSSIFAIKNLKKLSFSGCSGPPSSASWHL 466 (693)
Q Consensus 401 lp~~~~~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~l--------------p~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 466 (693)
.+ +.+-+-+.++.+|++|.|.+|.+... -.-+..-++|+++....|.+...
T Consensus 108 g~---------~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~------ 172 (382)
T KOG1909|consen 108 GI---------RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG------ 172 (382)
T ss_pred ch---------HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc------
Confidence 22 22223355677788888888876532 11233456777887777765433
Q ss_pred cccccccCCCCchhhhhhcccCCCCcCCeeeCCCCCCCCCCC---CccCCCCCCCCEEeCCCCCCc-----ccCccccCC
Q 037483 467 HFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAI---PNDIGNLCSLKELYLSKNNFV-----TLPASISGL 538 (693)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~---p~~l~~l~~L~~L~L~~n~l~-----~lp~~l~~l 538 (693)
+...+...+...+.|+.+.++.|.|....+ -..+..+++|+.|||..|.|+ .+...+..+
T Consensus 173 ------------ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~ 240 (382)
T KOG1909|consen 173 ------------GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSW 240 (382)
T ss_pred ------------cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhccc
Confidence 122233345555666666666666532222 123456666666666666665 234455566
Q ss_pred CCCCEEecccccc
Q 037483 539 LNLKELELEDCAL 551 (693)
Q Consensus 539 ~~L~~L~L~~n~~ 551 (693)
++|+.|++++|.+
T Consensus 241 ~~L~El~l~dcll 253 (382)
T KOG1909|consen 241 PHLRELNLGDCLL 253 (382)
T ss_pred chheeeccccccc
Confidence 6666666666665
No 64
>PRK08727 hypothetical protein; Validated
Probab=98.65 E-value=4.2e-07 Score=88.05 Aligned_cols=159 Identities=16% Similarity=0.106 Sum_probs=95.4
Q ss_pred CCccccchh-HHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEcccC---------CCCCeE
Q 037483 17 KKLVRIDSC-LEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEVG---------CNTKKV 86 (693)
Q Consensus 17 ~~~vGr~~~-~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~---------~~~~~~ 86 (693)
++|++.... +..+..+... . ....+.|+|.+|+|||+|++++++...++.....|+..... .-...-
T Consensus 19 ~~f~~~~~n~~~~~~~~~~~-~--~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~d 95 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAAG-Q--SSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRDALEALEGRS 95 (233)
T ss_pred hhccCCcHHHHHHHHHHHhc-c--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHHHHHHHhcCC
Confidence 456655543 3333333321 1 23569999999999999999999887665555566554210 112335
Q ss_pred EEEEecCCChh---hhh-HHhcCCCc-CCCCceEEEEeCCh---------HHHHHcCCCceeeCCCCCHHHHHHHHHHhc
Q 037483 87 LLVIDDVVDIK---QLE-YLVGKREW-FGSGSRIIITSRDE---------HLLKTHGVDELCEPNGLNYDEALQLLNTKA 152 (693)
Q Consensus 87 LlvlDdv~~~~---~~~-~l~~~~~~-~~~~~~iliTtR~~---------~~~~~~~~~~~~~l~~L~~~ea~~l~~~~~ 152 (693)
++|+||++... .++ .+...+.. ...+..||+|++.. .+...+.....+++++++.++-.+++.+++
T Consensus 96 lLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a 175 (233)
T PRK08727 96 LVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERA 175 (233)
T ss_pred EEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHH
Confidence 89999997432 222 22222211 13466799999863 233344445688999999999999999877
Q ss_pred ccCCCCchHHHHHHHHHHHHhCCCchhH
Q 037483 153 FKTHKPLEECAKLSERVPQYAGGLPLAL 180 (693)
Q Consensus 153 ~~~~~~~~~~~~~~~~i~~~~~g~Plal 180 (693)
...... -..+....|++.+.|-...+
T Consensus 176 ~~~~l~--l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 176 QRRGLA--LDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHcCCC--CCHHHHHHHHHhCCCCHHHH
Confidence 432221 12233555666666554433
No 65
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.64 E-value=2.7e-06 Score=88.95 Aligned_cols=166 Identities=14% Similarity=0.139 Sum_probs=110.3
Q ss_pred cCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhc----------------------ccce
Q 037483 14 ETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISH----------------------EFEG 71 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~----------------------~f~~ 71 (693)
..-.+++|.+..++.+.+.+..+. -.+.+.++|++|+|||++|+.+++.+.. +++
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~~~--~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~- 87 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKNGR--IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD- 87 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-
Confidence 444678999999999999987532 3568899999999999999999987531 122
Q ss_pred eEEEEcc--c---------------CCCCCeEEEEEecCCCh--hhhhHHhcCCCcCCCCceEEEEeCChH-HHHH-cCC
Q 037483 72 SSFLVDE--V---------------GCNTKKVLLVIDDVVDI--KQLEYLVGKREWFGSGSRIIITSRDEH-LLKT-HGV 130 (693)
Q Consensus 72 ~~~~~~~--~---------------~~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTtR~~~-~~~~-~~~ 130 (693)
..++... . ...+++-++|+|+++.. .....+...+....+.+.+|++|.+.. +... ...
T Consensus 88 ~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr 167 (355)
T TIGR02397 88 VIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSR 167 (355)
T ss_pred EEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhh
Confidence 2333221 0 13345668999998765 335556555544455667667765543 2222 223
Q ss_pred CceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHHh
Q 037483 131 DELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVLG 184 (693)
Q Consensus 131 ~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 184 (693)
...+++.++++++..+++...+-...... ..+.+..+++.++|.|..+....
T Consensus 168 ~~~~~~~~~~~~~l~~~l~~~~~~~g~~i--~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 168 CQRFDFKRIPLEDIVERLKKILDKEGIKI--EDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred eeEEEcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCChHHHHHHH
Confidence 45788999999999999988663322221 13456778899999987665544
No 66
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.63 E-value=5.7e-07 Score=87.29 Aligned_cols=141 Identities=18% Similarity=0.169 Sum_probs=87.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc----------CCCCCeEEEEEecCCCh---hhhhH-HhcCC
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV----------GCNTKKVLLVIDDVVDI---KQLEY-LVGKR 106 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~----------~~~~~~~LlvlDdv~~~---~~~~~-l~~~~ 106 (693)
.+.+.|+|++|+|||+|++++++........+.|+.... ... +--++++||++.. .+|+. +...+
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~-~~dlliiDdi~~~~~~~~~~~~lf~l~ 123 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWFVPEVLEGME-QLSLVCIDNIECIAGDELWEMAIFDLY 123 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhhhHHHHHHhh-hCCEEEEeChhhhcCCHHHHHHHHHHH
Confidence 457999999999999999999987765444445554422 111 1237899999654 23332 22222
Q ss_pred CcC-CCC-ceEEEEeCCh---------HHHHHcCCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCC
Q 037483 107 EWF-GSG-SRIIITSRDE---------HLLKTHGVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGG 175 (693)
Q Consensus 107 ~~~-~~~-~~iliTtR~~---------~~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g 175 (693)
... ..| .++|+||+.. .+...+....+++++++++++-.+++.+.+-.... .-.++...-|++.+.|
T Consensus 124 n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~--~l~~~v~~~L~~~~~~ 201 (235)
T PRK08084 124 NRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGF--ELPEDVGRFLLKRLDR 201 (235)
T ss_pred HHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhhcC
Confidence 111 233 4789999864 34445555678999999999999999886633221 1123445567777776
Q ss_pred CchhHHHHh
Q 037483 176 LPLALKVLG 184 (693)
Q Consensus 176 ~Plal~~~~ 184 (693)
...++..+-
T Consensus 202 d~r~l~~~l 210 (235)
T PRK08084 202 EMRTLFMTL 210 (235)
T ss_pred CHHHHHHHH
Confidence 655544443
No 67
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.61 E-value=1.8e-06 Score=88.08 Aligned_cols=159 Identities=14% Similarity=0.142 Sum_probs=109.1
Q ss_pred CCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHh------cccceeEEEEccc-----------
Q 037483 17 KKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLIS------HEFEGSSFLVDEV----------- 79 (693)
Q Consensus 17 ~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~------~~f~~~~~~~~~~----------- 79 (693)
++++|-+...+.+.+.+..+. -.+...++|+.|+|||++|+++++.+- .+.+...|...+.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~--~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~ 81 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR--FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNI 81 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC--CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHH
Confidence 468899999999999987532 367889999999999999999998652 2223333333111
Q ss_pred -------CCCCCeEEEEEecCCC--hhhhhHHhcCCCcCCCCceEEEEeCChH-HHHH-cCCCceeeCCCCCHHHHHHHH
Q 037483 80 -------GCNTKKVLLVIDDVVD--IKQLEYLVGKREWFGSGSRIIITSRDEH-LLKT-HGVDELCEPNGLNYDEALQLL 148 (693)
Q Consensus 80 -------~~~~~~~LlvlDdv~~--~~~~~~l~~~~~~~~~~~~iliTtR~~~-~~~~-~~~~~~~~l~~L~~~ea~~l~ 148 (693)
...+++-++|+|+++. ...+..+...+....+++.+|++|.+.. +... ......+++.++++++...++
T Consensus 82 ~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l 161 (313)
T PRK05564 82 IEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFI 161 (313)
T ss_pred HHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHH
Confidence 1344566777777754 4457778887777678888888887653 2111 223568899999999999888
Q ss_pred HHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHH
Q 037483 149 NTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVL 183 (693)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 183 (693)
..... ..+ .+.++.++.+++|.|..+...
T Consensus 162 ~~~~~--~~~----~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 162 SYKYN--DIK----EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred HHHhc--CCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 76541 111 223667889999998655433
No 68
>PLN03150 hypothetical protein; Provisional
Probab=98.60 E-value=8e-08 Score=106.91 Aligned_cols=106 Identities=31% Similarity=0.513 Sum_probs=83.3
Q ss_pred CccEEecCCCccc-cCCCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCeeeCCCC
Q 037483 423 ILEELDISGTTIR-EPPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYC 501 (693)
Q Consensus 423 ~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n 501 (693)
.++.|+|++|.+. .+|..+..+++|+.|+|++|.+....+. .++.+++|+.|+|++|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~----------------------~~~~l~~L~~LdLs~N 476 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP----------------------SLGSITSLEVLDLSYN 476 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCCh----------------------HHhCCCCCCEEECCCC
Confidence 3778888888887 4577888888999999988877655432 5778888899999998
Q ss_pred CCCCCCCCccCCCCCCCCEEeCCCCCCc-ccCccccCC-CCCCEEecccccc
Q 037483 502 GLGEGAIPNDIGNLCSLKELYLSKNNFV-TLPASISGL-LNLKELELEDCAL 551 (693)
Q Consensus 502 ~l~~~~~p~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l-~~L~~L~L~~n~~ 551 (693)
.+ .+.+|..++++++|+.|+|++|+++ .+|..+..+ .++..+++.+|..
T Consensus 477 ~l-sg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 477 SF-NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CC-CCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcc
Confidence 88 5678888888899999999998888 788777653 4667777777753
No 69
>PLN03025 replication factor C subunit; Provisional
Probab=98.60 E-value=1.9e-06 Score=88.12 Aligned_cols=162 Identities=15% Similarity=0.215 Sum_probs=102.2
Q ss_pred ccCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHh-cccceeEEEEc---ccC--------
Q 037483 13 SETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLIS-HEFEGSSFLVD---EVG-------- 80 (693)
Q Consensus 13 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~~~---~~~-------- 80 (693)
|..-.+++|.++.++.|.+++..+ +.+-+.++|++|+||||+|..+++.+. ..|.....-.+ ..+
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~~---~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr~~i 85 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARDG---NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKI 85 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhcC---CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHHHHHH
Confidence 444568999999999998887643 334477999999999999999998763 22322111111 110
Q ss_pred ----------CCCCeEEEEEecCCChhh--hhHHhcCCCcCCCCceEEEEeCCh-HHHHH-cCCCceeeCCCCCHHHHHH
Q 037483 81 ----------CNTKKVLLVIDDVVDIKQ--LEYLVGKREWFGSGSRIIITSRDE-HLLKT-HGVDELCEPNGLNYDEALQ 146 (693)
Q Consensus 81 ----------~~~~~~LlvlDdv~~~~~--~~~l~~~~~~~~~~~~iliTtR~~-~~~~~-~~~~~~~~l~~L~~~ea~~ 146 (693)
..++.-++|+|+++.... ...+.......+..+++++++... .+... ......++++++++++..+
T Consensus 86 ~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~ 165 (319)
T PLN03025 86 KMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILG 165 (319)
T ss_pred HHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHH
Confidence 124567999999986532 334444333345667777766542 22111 1123578999999999999
Q ss_pred HHHHhcccCCCCchHHHHHHHHHHHHhCCCchh
Q 037483 147 LLNTKAFKTHKPLEECAKLSERVPQYAGGLPLA 179 (693)
Q Consensus 147 l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 179 (693)
.+...+-......+ .+....|++.++|-...
T Consensus 166 ~L~~i~~~egi~i~--~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 166 RLMKVVEAEKVPYV--PEGLEAIIFTADGDMRQ 196 (319)
T ss_pred HHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHH
Confidence 98887743322211 23467788888887643
No 70
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=6.6e-07 Score=99.07 Aligned_cols=166 Identities=19% Similarity=0.132 Sum_probs=112.5
Q ss_pred cCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc---------------------ccee
Q 037483 14 ETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHE---------------------FEGS 72 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---------------------f~~~ 72 (693)
..-.++||.+..++.|..++..+. -.+.+.++|+.|+||||+|+.+++.+-.. |...
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~r--l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQR--LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCC--CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 344689999999999999987532 25667999999999999999999875321 2222
Q ss_pred EEEEcc--c---------------CCCCCeEEEEEecCCCh--hhhhHHhcCCCcCCCCceEEEEeCC-hHHHHH-cCCC
Q 037483 73 SFLVDE--V---------------GCNTKKVLLVIDDVVDI--KQLEYLVGKREWFGSGSRIIITSRD-EHLLKT-HGVD 131 (693)
Q Consensus 73 ~~~~~~--~---------------~~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTtR~-~~~~~~-~~~~ 131 (693)
+++... . ...+++-++|||+++.. ...+.|+..+.......++|++|.+ ..+... ....
T Consensus 91 iEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRC 170 (944)
T PRK14949 91 IEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRC 170 (944)
T ss_pred EEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhh
Confidence 333221 1 13467789999999765 4466776666655566766666555 333322 2235
Q ss_pred ceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHH
Q 037483 132 ELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVL 183 (693)
Q Consensus 132 ~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 183 (693)
..|++.+++.++..+++.+.+-..... ...+....|++.++|.|.-+..+
T Consensus 171 q~f~fkpLs~eEI~~~L~~il~~EgI~--~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 171 LQFNLKSLTQDEIGTQLNHILTQEQLP--FEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred eEEeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 689999999999999998866332211 22345677999999988644433
No 71
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.59 E-value=1.6e-06 Score=94.13 Aligned_cols=166 Identities=16% Similarity=0.139 Sum_probs=108.7
Q ss_pred cCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhc---------------------cccee
Q 037483 14 ETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISH---------------------EFEGS 72 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~---------------------~f~~~ 72 (693)
..-.++||.+..++.|..++..+. -.+.+.++|+.|+||||+|+.+++.+-- .|...
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~~r--l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dv 90 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDEGR--LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL 90 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccce
Confidence 344689999999999999998632 3578999999999999999999875421 12222
Q ss_pred EEEEcc--cC---------------CCCCeEEEEEecCCChhh--hhHHhcCCCcCCCCceEEEEeCCh-HHHHH-cCCC
Q 037483 73 SFLVDE--VG---------------CNTKKVLLVIDDVVDIKQ--LEYLVGKREWFGSGSRIIITSRDE-HLLKT-HGVD 131 (693)
Q Consensus 73 ~~~~~~--~~---------------~~~~~~LlvlDdv~~~~~--~~~l~~~~~~~~~~~~iliTtR~~-~~~~~-~~~~ 131 (693)
+.+... .+ ..+++-++|+|+++.... ...|+..+......+++|++|.+. .+... .+..
T Consensus 91 lEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC 170 (709)
T PRK08691 91 LEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRC 170 (709)
T ss_pred EEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHH
Confidence 333211 11 235667899999986543 444555544344566777776553 22211 1223
Q ss_pred ceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHH
Q 037483 132 ELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVL 183 (693)
Q Consensus 132 ~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 183 (693)
..+++..++.++..+.+.+.+-...... ..+....|++.++|.+.-+..+
T Consensus 171 ~~f~f~~Ls~eeI~~~L~~Il~kEgi~i--d~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 171 LQFVLRNMTAQQVADHLAHVLDSEKIAY--EPPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred hhhhcCCCCHHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHhCCCHHHHHHH
Confidence 5678889999999999988774333222 2345678999999988544433
No 72
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=2.9e-06 Score=90.21 Aligned_cols=169 Identities=18% Similarity=0.129 Sum_probs=106.1
Q ss_pred ccCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc---------------------cce
Q 037483 13 SETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHE---------------------FEG 71 (693)
Q Consensus 13 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---------------------f~~ 71 (693)
|..-+++||.+...+.|...+..+. -.+.+.++|++|+||||+|+.+++.+... +..
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~~--l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~d 87 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKNS--ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMD 87 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCc
Confidence 3445689999988888888877532 24678999999999999999998865321 111
Q ss_pred eEEEEcc--c---------------CCCCCeEEEEEecCCChh--hhhHHhcCCCcCCCCceEEEEeCC-hHHHHHc-CC
Q 037483 72 SSFLVDE--V---------------GCNTKKVLLVIDDVVDIK--QLEYLVGKREWFGSGSRIIITSRD-EHLLKTH-GV 130 (693)
Q Consensus 72 ~~~~~~~--~---------------~~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTtR~-~~~~~~~-~~ 130 (693)
...+... . ...+++-++|+|+++... +.+.+...+....+...+|++|.+ ..+.... ..
T Consensus 88 v~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR 167 (472)
T PRK14962 88 VIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISR 167 (472)
T ss_pred cEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcC
Confidence 2222221 1 133466799999997653 345555555433444554444443 3333322 33
Q ss_pred CceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCC-chhHHHHhh
Q 037483 131 DELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGL-PLALKVLGS 185 (693)
Q Consensus 131 ~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~ 185 (693)
...+++.+++.++....+...+-...... ..+....|++.++|- +.|+..+..
T Consensus 168 ~~vv~f~~l~~~el~~~L~~i~~~egi~i--~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 168 CQVIEFRNISDELIIKRLQEVAEAEGIEI--DREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred cEEEEECCccHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 56889999999999999888764322221 223456678777654 566666644
No 73
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.59 E-value=8.5e-07 Score=96.78 Aligned_cols=216 Identities=16% Similarity=0.150 Sum_probs=117.6
Q ss_pred CCCccCCCCccccchhHHHHHHHHhcCC--CCCeEEEEEEcCCCchHHHHHHHHHHHHhcc-----cc--eeEEEEccc-
Q 037483 10 PVKSETLKKLVRIDSCLEELRSLMDEGL--NDDVRMIGICGMGGLGKTTLVRAVYDLISHE-----FE--GSSFLVDEV- 79 (693)
Q Consensus 10 ~~~~~~~~~~vGr~~~~~~l~~~l~~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f~--~~~~~~~~~- 79 (693)
-.+.+.++.+.|||+++++|...|...- .+...++.|+|++|.|||+.++.+.+++.+. .+ ..+++....
T Consensus 748 L~~DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~L 827 (1164)
T PTZ00112 748 MQLDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNV 827 (1164)
T ss_pred cCcccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCcc
Confidence 4455677899999999999999987621 2234577899999999999999998876432 11 123332200
Q ss_pred ---------------------C----------------CCCCeEEEEEecCCChh--hhhHHhcCCCcC-CCCceEEE--
Q 037483 80 ---------------------G----------------CNTKKVLLVIDDVVDIK--QLEYLVGKREWF-GSGSRIII-- 117 (693)
Q Consensus 80 ---------------------~----------------~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~-~~~~~ili-- 117 (693)
+ ......+||||+++... +-+.|...+.|. ..+++|++
T Consensus 828 stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIG 907 (1164)
T PTZ00112 828 VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIA 907 (1164)
T ss_pred CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEE
Confidence 0 11224689999997543 112222111111 23445443
Q ss_pred EeCChH--------HHHHcCCCceeeCCCCCHHHHHHHHHHhcccC-C-CCchHHHHHHHHHHHHhCCCchhHHHHhhhh
Q 037483 118 TSRDEH--------LLKTHGVDELCEPNGLNYDEALQLLNTKAFKT-H-KPLEECAKLSERVPQYAGGLPLALKVLGSFL 187 (693)
Q Consensus 118 TtR~~~--------~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~-~-~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 187 (693)
++.+.. +...++ ...+..++.+.++-.+++..++-.. . ...+..+-+|+.++...|-.=.||.++-.+.
T Consensus 908 ISNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 908 ISNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred ecCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 443311 222222 2246678999999999999987421 1 1222333333434333344445555553332
Q ss_pred c--CC---ChHHHHHHHHHhccCCCchHHHHHHHhhccCcHhhHhHHhhhh
Q 037483 188 N--GR---STDQWRSTLERLKRDPPNKIMSILQISFDGLQDSEKKIFLDVA 233 (693)
Q Consensus 188 ~--~~---~~~~w~~~l~~l~~~~~~~~~~~l~~s~~~L~~~~~~~~~~la 233 (693)
. +. ..+....+..++.. ..+.-....||.++|.++..+.
T Consensus 987 EikegskVT~eHVrkAleeiE~-------srI~e~IktLPlHqKLVLlALI 1030 (1164)
T PTZ00112 987 ENKRGQKIVPRDITEATNQLFD-------SPLTNAINYLPWPFKMFLTCLI 1030 (1164)
T ss_pred hhcCCCccCHHHHHHHHHHHHh-------hhHHHHHHcCCHHHHHHHHHHH
Confidence 2 11 22333333333211 1233345678888877766544
No 74
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=6.5e-07 Score=95.85 Aligned_cols=165 Identities=14% Similarity=0.072 Sum_probs=111.5
Q ss_pred cCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhc--------------------------
Q 037483 14 ETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISH-------------------------- 67 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-------------------------- 67 (693)
..-+++||-+..++.|.+.+..+. -.+.+.++|..|+||||+|+.+++.+-.
T Consensus 13 qtFddVIGQe~vv~~L~~al~~gR--LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQR--LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAG 90 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhCC--CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcC
Confidence 344689999999999999998643 3567899999999999999999886532
Q ss_pred ccceeEEEEcc--c---------------CCCCCeEEEEEecCCChh--hhhHHhcCCCcCCCCceEEEEeCC-hHHHHH
Q 037483 68 EFEGSSFLVDE--V---------------GCNTKKVLLVIDDVVDIK--QLEYLVGKREWFGSGSRIIITSRD-EHLLKT 127 (693)
Q Consensus 68 ~f~~~~~~~~~--~---------------~~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTtR~-~~~~~~ 127 (693)
.|...+.+... . ...++.-++|||+++... ....|+..+..-..++++|++|.+ ..+...
T Consensus 91 ~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpT 170 (700)
T PRK12323 91 RFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVT 170 (700)
T ss_pred CCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhH
Confidence 11223333221 0 134567799999998764 466777766655566665555554 444332
Q ss_pred c-CCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHH
Q 037483 128 H-GVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKV 182 (693)
Q Consensus 128 ~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 182 (693)
. .....+.+..++.++..+.+.+.+....... ..+..+.|++.++|.|.....
T Consensus 171 IrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~--d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 171 VLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH--EVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred HHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHH
Confidence 2 2246789999999999999887764322221 223457789999999864433
No 75
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=3.3e-06 Score=89.31 Aligned_cols=163 Identities=17% Similarity=0.134 Sum_probs=110.1
Q ss_pred cCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHh---------------------ccccee
Q 037483 14 ETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLIS---------------------HEFEGS 72 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~---------------------~~f~~~ 72 (693)
..-.++||.+..++.|...+..+. -.+.+.++|+.|+||||+|+.+++.+- ..+..+
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~r--i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLNK--IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC--CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 445789999999999998887542 256899999999999999999987531 122333
Q ss_pred EEEEcc--c---------------CCCCCeEEEEEecCCChh--hhhHHhcCCCcCCCCceEEEEeCC-hHHHHH-cCCC
Q 037483 73 SFLVDE--V---------------GCNTKKVLLVIDDVVDIK--QLEYLVGKREWFGSGSRIIITSRD-EHLLKT-HGVD 131 (693)
Q Consensus 73 ~~~~~~--~---------------~~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTtR~-~~~~~~-~~~~ 131 (693)
..+... . ...++.-++|+|+++... ..+.+...+....+.+++|++|.+ +.+... ....
T Consensus 88 ~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc 167 (491)
T PRK14964 88 IEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRC 167 (491)
T ss_pred EEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhh
Confidence 344331 1 134567789999997653 356666666555567766665543 444332 2335
Q ss_pred ceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhH
Q 037483 132 ELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLAL 180 (693)
Q Consensus 132 ~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 180 (693)
..+++.+++.++..+.+...+....... ..+....|++.++|.+..+
T Consensus 168 ~~~~f~~l~~~el~~~L~~ia~~Egi~i--~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 168 QRFDLQKIPTDKLVEHLVDIAKKENIEH--DEESLKLIAENSSGSMRNA 214 (491)
T ss_pred eeeecccccHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 6789999999999999988774433222 2234667888999987543
No 76
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.55 E-value=1.8e-06 Score=88.34 Aligned_cols=167 Identities=16% Similarity=0.110 Sum_probs=110.3
Q ss_pred CccCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc-----------------------
Q 037483 12 KSETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHE----------------------- 68 (693)
Q Consensus 12 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~----------------------- 68 (693)
.|.....++|-++..+.+...+..+. ..+.+.|+|+.|+||||+|..+++.+-..
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~gr--l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i 95 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREGK--LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQI 95 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcCC--CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHH
Confidence 45667889999999999999998643 36789999999999999999998865320
Q ss_pred ----cceeEEEEc----c-----c-----------------CCCCCeEEEEEecCCChhh--hhHHhcCCCcCCCCceEE
Q 037483 69 ----FEGSSFLVD----E-----V-----------------GCNTKKVLLVIDDVVDIKQ--LEYLVGKREWFGSGSRII 116 (693)
Q Consensus 69 ----f~~~~~~~~----~-----~-----------------~~~~~~~LlvlDdv~~~~~--~~~l~~~~~~~~~~~~il 116 (693)
.+...++.. . . ...++.-++|+|+++.... .+.+...+........+|
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fi 175 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFI 175 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEE
Confidence 011122321 0 0 1345677899999986643 455555554434455544
Q ss_pred E-EeCChHHHHHc-CCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHHh
Q 037483 117 I-TSRDEHLLKTH-GVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVLG 184 (693)
Q Consensus 117 i-TtR~~~~~~~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 184 (693)
+ |++...+.... .....+++.+++.++..+++........ -..+.+..+++.++|.|.....+.
T Consensus 176 Lit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~----~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 176 LISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG----SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred EEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4 44443332222 2346899999999999999987532111 112346678999999997655443
No 77
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=2.7e-06 Score=89.51 Aligned_cols=165 Identities=13% Similarity=0.058 Sum_probs=107.7
Q ss_pred ccCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc------------------------
Q 037483 13 SETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHE------------------------ 68 (693)
Q Consensus 13 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------------------------ 68 (693)
|..-.+++|.+...+.|.+++..+. -.+.+.++|++|+||||+|+.+++.+.-.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~~--~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~ 89 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMGR--VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRD 89 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhCC--cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHH
Confidence 3444689999999999999887532 35678999999999999999999876321
Q ss_pred ------cceeEEEEc-c-c---------------CCCCCeEEEEEecCCChh--hhhHHhcCCCcCCCCceEEEEe-CCh
Q 037483 69 ------FEGSSFLVD-E-V---------------GCNTKKVLLVIDDVVDIK--QLEYLVGKREWFGSGSRIIITS-RDE 122 (693)
Q Consensus 69 ------f~~~~~~~~-~-~---------------~~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTt-R~~ 122 (693)
++. ..+.. . . ...+++-++|+|+++... .++.+...+....+.+.+|++| +..
T Consensus 90 ~~~~~~~n~-~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~ 168 (397)
T PRK14955 90 FDAGTSLNI-SEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELH 168 (397)
T ss_pred HhcCCCCCe-EeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 111 11111 0 0 133456788999997653 4666666655455666666555 434
Q ss_pred HHHHHc-CCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHH
Q 037483 123 HLLKTH-GVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKV 182 (693)
Q Consensus 123 ~~~~~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 182 (693)
.+.... .....+++.++++++..+.+...+-.... .-..+.+..+++.++|.+.-+..
T Consensus 169 kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~--~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 169 KIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI--SVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 443221 22357899999999999888877632221 12234567899999998864443
No 78
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.53 E-value=5.3e-06 Score=88.61 Aligned_cols=164 Identities=14% Similarity=0.091 Sum_probs=109.3
Q ss_pred ccCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccc-----------------------
Q 037483 13 SETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEF----------------------- 69 (693)
Q Consensus 13 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f----------------------- 69 (693)
|..-.++||-+..++.|...+..+. -.+.+.++|++|+||||+|+.+++.+-...
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~r--i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~ 94 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILNDR--LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNH 94 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC--CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcC
Confidence 3444689999999999988877532 257899999999999999999998652210
Q ss_pred --ceeEEEEcc--c---------------CCCCCeEEEEEecCCCh--hhhhHHhcCCCcCCCCceEEE-EeCChHHHHH
Q 037483 70 --EGSSFLVDE--V---------------GCNTKKVLLVIDDVVDI--KQLEYLVGKREWFGSGSRIII-TSRDEHLLKT 127 (693)
Q Consensus 70 --~~~~~~~~~--~---------------~~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~ili-TtR~~~~~~~ 127 (693)
+....+... . ...+++-++|+|+++.. ..+..+...+....+.+.+|+ ||+.+.+...
T Consensus 95 ~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~t 174 (507)
T PRK06645 95 NHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPAT 174 (507)
T ss_pred CCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHH
Confidence 111222110 0 13456778999999875 346667666554455666554 5554454433
Q ss_pred c-CCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhH
Q 037483 128 H-GVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLAL 180 (693)
Q Consensus 128 ~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 180 (693)
. .....+++.+++.++..+++...+-...... ..+....|++.++|.+.-+
T Consensus 175 I~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i--e~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 175 IISRCQRYDLRRLSFEEIFKLLEYITKQENLKT--DIEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHhcceEEEccCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 2 2346789999999999999988874333222 2234567888999987544
No 79
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=1.9e-06 Score=89.39 Aligned_cols=160 Identities=14% Similarity=0.104 Sum_probs=106.7
Q ss_pred CCccccchhHHHHHHHHhcCCC-------CCeEEEEEEcCCCchHHHHHHHHHHHHhc--------------------cc
Q 037483 17 KKLVRIDSCLEELRSLMDEGLN-------DDVRMIGICGMGGLGKTTLVRAVYDLISH--------------------EF 69 (693)
Q Consensus 17 ~~~vGr~~~~~~l~~~l~~~~~-------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~--------------------~f 69 (693)
.+++|-+..++.|.+.+..... .-.+.+.++|++|+|||++|+.+++.+-- .+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 4689999999999999986431 13678999999999999999999875421 12
Q ss_pred ceeEEEEccc------------------CCCCCeEEEEEecCCChh--hhhHHhcCCCcCCCCceEEEEeCCh-HHHHH-
Q 037483 70 EGSSFLVDEV------------------GCNTKKVLLVIDDVVDIK--QLEYLVGKREWFGSGSRIIITSRDE-HLLKT- 127 (693)
Q Consensus 70 ~~~~~~~~~~------------------~~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTtR~~-~~~~~- 127 (693)
+...++..+. ...+++-++|+|+++... ....+...+....++..+|++|.+. .+...
T Consensus 85 pD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTI 164 (394)
T PRK07940 85 PDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTI 164 (394)
T ss_pred CCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHH
Confidence 3333443211 134456688889998664 3445555555445667666666653 33322
Q ss_pred cCCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHH
Q 037483 128 HGVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVL 183 (693)
Q Consensus 128 ~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 183 (693)
......+.+.+++.++..+++..... .+ .+.+..++..++|.|.....+
T Consensus 165 rSRc~~i~f~~~~~~~i~~~L~~~~~---~~----~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 165 RSRCRHVALRTPSVEAVAEVLVRRDG---VD----PETARRAARASQGHIGRARRL 213 (394)
T ss_pred HhhCeEEECCCCCHHHHHHHHHHhcC---CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 23356889999999999998875431 11 234677899999999654333
No 80
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=2.1e-06 Score=92.14 Aligned_cols=166 Identities=16% Similarity=0.115 Sum_probs=108.9
Q ss_pred cCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhc---------------------cccee
Q 037483 14 ETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISH---------------------EFEGS 72 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~---------------------~f~~~ 72 (693)
..-.+++|-+..++.|...+..+. -.+.+.++|++|+||||+|+.+++.+.. .|...
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~r--l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQK--VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 344689999999999999987532 3567889999999999999999986532 13333
Q ss_pred EEEEc-c-c---------------CCCCCeEEEEEecCCCh--hhhhHHhcCCCcCCCCceEEEEeCC-hHHHHH-cCCC
Q 037483 73 SFLVD-E-V---------------GCNTKKVLLVIDDVVDI--KQLEYLVGKREWFGSGSRIIITSRD-EHLLKT-HGVD 131 (693)
Q Consensus 73 ~~~~~-~-~---------------~~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTtR~-~~~~~~-~~~~ 131 (693)
+.+.. . . ...+++-++|+|+++.. ...+.|...+......+++|++|-+ ..+... ....
T Consensus 91 ieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc 170 (546)
T PRK14957 91 IEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRC 170 (546)
T ss_pred EEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHhe
Confidence 33322 1 1 13456779999999755 3466676666655556666554444 333322 2335
Q ss_pred ceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCch-hHHHH
Q 037483 132 ELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPL-ALKVL 183 (693)
Q Consensus 132 ~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 183 (693)
..+++.+++.++..+.+.+.+-..... ...+....|++.++|.+. |+..+
T Consensus 171 ~~~~f~~Ls~~eI~~~L~~il~~egi~--~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 171 IQLHLKHISQADIKDQLKIILAKENIN--SDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred eeEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 689999999999988888765322211 123345678888888764 43333
No 81
>PRK06620 hypothetical protein; Validated
Probab=98.52 E-value=7.4e-07 Score=84.73 Aligned_cols=158 Identities=12% Similarity=-0.034 Sum_probs=88.1
Q ss_pred cCCCCccccchh--HHHHHHHHhcCCCCC-eEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc---CCCCCeEE
Q 037483 14 ETLKKLVRIDSC--LEELRSLMDEGLNDD-VRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV---GCNTKKVL 87 (693)
Q Consensus 14 ~~~~~~vGr~~~--~~~l~~~l~~~~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~---~~~~~~~L 87 (693)
.....+||-... ...+.++-....... .+.+.|||++|+|||+|++++++.... .++.... ......-+
T Consensus 14 tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~~~~~~~~~~~~~d~ 88 (214)
T PRK06620 14 HPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIKDIFFNEEILEKYNA 88 (214)
T ss_pred CchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCC-----EEcchhhhchhHHhcCCE
Confidence 334556666333 334444432111101 267999999999999999998775422 2222111 01122347
Q ss_pred EEEecCCChhhhhHHhcCCCc-CCCCceEEEEeCChH-------HHHHcCCCceeeCCCCCHHHHHHHHHHhcccCCCCc
Q 037483 88 LVIDDVVDIKQLEYLVGKREW-FGSGSRIIITSRDEH-------LLKTHGVDELCEPNGLNYDEALQLLNTKAFKTHKPL 159 (693)
Q Consensus 88 lvlDdv~~~~~~~~l~~~~~~-~~~~~~iliTtR~~~-------~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~ 159 (693)
+++||++...+ +.+...++. ...|..||+|++... +..+....-+++++++++++-.+++.+.+-.....
T Consensus 89 lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~- 166 (214)
T PRK06620 89 FIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVT- 166 (214)
T ss_pred EEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCC-
Confidence 88999985433 122221111 135678999988532 33444555689999999999888887776322111
Q ss_pred hHHHHHHHHHHHHhCCCchh
Q 037483 160 EECAKLSERVPQYAGGLPLA 179 (693)
Q Consensus 160 ~~~~~~~~~i~~~~~g~Pla 179 (693)
-.++..+-|++++.|.-..
T Consensus 167 -l~~ev~~~L~~~~~~d~r~ 185 (214)
T PRK06620 167 -ISRQIIDFLLVNLPREYSK 185 (214)
T ss_pred -CCHHHHHHHHHHccCCHHH
Confidence 1223445566666555433
No 82
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.51 E-value=2.5e-07 Score=96.39 Aligned_cols=161 Identities=17% Similarity=0.249 Sum_probs=98.9
Q ss_pred cCCCCccccchhHHHHHHHHhcCCC----------CCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEE-------EE
Q 037483 14 ETLKKLVRIDSCLEELRSLMDEGLN----------DDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSF-------LV 76 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~~~~----------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~-------~~ 76 (693)
....++.|+++.++++.+.+...-. ..++-+.|+|++|+|||++|+++++.....|-.... +.
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g 198 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIG 198 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhh
Confidence 3446789999999999987753210 135669999999999999999999876555422110 00
Q ss_pred ccc---------CCCCCeEEEEEecCCChh----------------hhhHHhcCCCcC--CCCceEEEEeCChH-----H
Q 037483 77 DEV---------GCNTKKVLLVIDDVVDIK----------------QLEYLVGKREWF--GSGSRIIITSRDEH-----L 124 (693)
Q Consensus 77 ~~~---------~~~~~~~LlvlDdv~~~~----------------~~~~l~~~~~~~--~~~~~iliTtR~~~-----~ 124 (693)
... .....+.+|++|+++... .+..+...+... ..+.+||.||.... +
T Consensus 199 ~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al 278 (364)
T TIGR01242 199 EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPAL 278 (364)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhh
Confidence 000 123456899999986531 122222222211 24677888887543 2
Q ss_pred HHHcCCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCc
Q 037483 125 LKTHGVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLP 177 (693)
Q Consensus 125 ~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 177 (693)
......+..++++..+.++..++|..++.......+. ....+++.+.|..
T Consensus 279 ~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~---~~~~la~~t~g~s 328 (364)
T TIGR01242 279 LRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV---DLEAIAKMTEGAS 328 (364)
T ss_pred cCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC---CHHHHHHHcCCCC
Confidence 2111235678999999999999999887443322110 1345667777654
No 83
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.51 E-value=2.7e-06 Score=79.87 Aligned_cols=142 Identities=20% Similarity=0.200 Sum_probs=94.5
Q ss_pred HHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhc---------------------ccceeEEEEccc-------
Q 037483 28 ELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISH---------------------EFEGSSFLVDEV------- 79 (693)
Q Consensus 28 ~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~---------------------~f~~~~~~~~~~------- 79 (693)
.+.+.+... .-.+.+.++|+.|+|||++|+.+++.+-. .++...++....
T Consensus 3 ~l~~~i~~~--~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~ 80 (188)
T TIGR00678 3 QLKRALEKG--RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQ 80 (188)
T ss_pred HHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHH
Confidence 455555542 13578999999999999999999987642 232233332210
Q ss_pred -----------CCCCCeEEEEEecCCChh--hhhHHhcCCCcCCCCceEEEEeCCh-HHHHH-cCCCceeeCCCCCHHHH
Q 037483 80 -----------GCNTKKVLLVIDDVVDIK--QLEYLVGKREWFGSGSRIIITSRDE-HLLKT-HGVDELCEPNGLNYDEA 144 (693)
Q Consensus 80 -----------~~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTtR~~-~~~~~-~~~~~~~~l~~L~~~ea 144 (693)
...+.+-++|+||++... ..+.+...+....+.+.+|++|++. .+... ......+++.+++.++.
T Consensus 81 i~~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~ 160 (188)
T TIGR00678 81 VRELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEAL 160 (188)
T ss_pred HHHHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHH
Confidence 134567789999997653 3566666665555677777777653 22221 12346899999999999
Q ss_pred HHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchh
Q 037483 145 LQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLA 179 (693)
Q Consensus 145 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 179 (693)
.+++.... .. .+.+..+++.++|.|..
T Consensus 161 ~~~l~~~g----i~----~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 161 LQWLIRQG----IS----EEAAELLLALAGGSPGA 187 (188)
T ss_pred HHHHHHcC----CC----HHHHHHHHHHcCCCccc
Confidence 99998871 11 24577899999998853
No 84
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.50 E-value=5.6e-08 Score=72.15 Aligned_cols=59 Identities=42% Similarity=0.589 Sum_probs=52.4
Q ss_pred CcCCeeeCCCCCCCCCCCC-ccCCCCCCCCEEeCCCCCCcccC-ccccCCCCCCEEecccccc
Q 037483 491 CSLSKLDLSYCGLGEGAIP-NDIGNLCSLKELYLSKNNFVTLP-ASISGLLNLKELELEDCAL 551 (693)
Q Consensus 491 ~~L~~L~ls~n~l~~~~~p-~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~n~~ 551 (693)
++|+.|++++|.++. +| ..|..+++|++|++++|.++.++ ..+..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~--i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTE--IPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESE--ECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCc--cCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 579999999999943 55 57899999999999999999887 5789999999999999975
No 85
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=5.4e-06 Score=89.19 Aligned_cols=165 Identities=15% Similarity=0.092 Sum_probs=108.5
Q ss_pred cCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHh---------------------ccccee
Q 037483 14 ETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLIS---------------------HEFEGS 72 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~---------------------~~f~~~ 72 (693)
..-.++||-+..++.|..++..+. -.+.+.++|+.|+||||+|+.+++.+- ..++..
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~~~--l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQQY--LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCC--CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 344689999999999999997642 256789999999999999999988642 123333
Q ss_pred EEEEcc--c---------------CCCCCeEEEEEecCCCh--hhhhHHhcCCCcCCCCceEEEEeCCh-HHHHH-cCCC
Q 037483 73 SFLVDE--V---------------GCNTKKVLLVIDDVVDI--KQLEYLVGKREWFGSGSRIIITSRDE-HLLKT-HGVD 131 (693)
Q Consensus 73 ~~~~~~--~---------------~~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTtR~~-~~~~~-~~~~ 131 (693)
..+... . ...++.-++|+|+++.. .....+...+....+.+++|++|.+. .+... ....
T Consensus 91 ~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc 170 (509)
T PRK14958 91 FEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRC 170 (509)
T ss_pred EEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHh
Confidence 444321 1 13456678999999865 34566666555555677766665543 33222 1224
Q ss_pred ceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHH
Q 037483 132 ELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKV 182 (693)
Q Consensus 132 ~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 182 (693)
..+++.+++.++..+.+...+-......+ .+....|++.++|.+.-+..
T Consensus 171 ~~~~f~~l~~~~i~~~l~~il~~egi~~~--~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 171 LQFHLAQLPPLQIAAHCQHLLKEENVEFE--NAALDLLARAANGSVRDALS 219 (509)
T ss_pred hhhhcCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCcHHHHHH
Confidence 57889999999988887766533222221 23356788888998854433
No 86
>PLN03150 hypothetical protein; Provisional
Probab=98.49 E-value=2e-07 Score=103.81 Aligned_cols=105 Identities=21% Similarity=0.325 Sum_probs=85.8
Q ss_pred CCcEEEcCCCCCcccchhhhcCccccceeccCCcCce-eecCCcCCCCCCCEEecCCCCCCccCCCCCCCCccccccccc
Q 037483 339 CLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFIT-KLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLENVSET 417 (693)
Q Consensus 339 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~lp~~ 417 (693)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+. .+|..+..+++|+.|+|++|.+.+.+|. .
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~-------------~ 485 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE-------------S 485 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch-------------H
Confidence 4788899998888888888999999999999999887 7888889999999999999977776654 4
Q ss_pred ccCCCCccEEecCCCccc-cCCCccccC-CCCCEEEccCCC
Q 037483 418 LGQVEILEELDISGTTIR-EPPSSIFAI-KNLKKLSFSGCS 456 (693)
Q Consensus 418 l~~l~~L~~L~l~~n~i~-~lp~~~~~l-~~L~~L~l~~~~ 456 (693)
++++++|++|+|++|.++ .+|..+..+ .++..+++.+|.
T Consensus 486 l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 486 LGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred HhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 577788999999999888 557777653 466778888774
No 87
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.48 E-value=7.2e-07 Score=99.35 Aligned_cols=163 Identities=22% Similarity=0.281 Sum_probs=99.4
Q ss_pred ccCCCCccccchhHH---HHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEE-Ec--c--------
Q 037483 13 SETLKKLVRIDSCLE---ELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFL-VD--E-------- 78 (693)
Q Consensus 13 ~~~~~~~vGr~~~~~---~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~-~~--~-------- 78 (693)
|..-++++|.+..+. .+.+.+.. ++...+.++|++|+||||+|+.+++.....|...--. .. .
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~---~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~i~dir~~i~~a 100 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA---DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAGVKDLRAEVDRA 100 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc---CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhhhHHHHHHHHHH
Confidence 444567999998885 45566653 2456689999999999999999998776554221100 00 0
Q ss_pred ---cCCCCCeEEEEEecCCCh--hhhhHHhcCCCcCCCCceEEEE--eCChH--HHHH-cCCCceeeCCCCCHHHHHHHH
Q 037483 79 ---VGCNTKKVLLVIDDVVDI--KQLEYLVGKREWFGSGSRIIIT--SRDEH--LLKT-HGVDELCEPNGLNYDEALQLL 148 (693)
Q Consensus 79 ---~~~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliT--tR~~~--~~~~-~~~~~~~~l~~L~~~ea~~l~ 148 (693)
....+++.++||||++.. .+.+.+.... ..+..++|+ |.+.. +... .....++.+++++.++...++
T Consensus 101 ~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL 177 (725)
T PRK13341 101 KERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLL 177 (725)
T ss_pred HHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHH
Confidence 012346779999999754 4455565543 245555553 33321 1111 122457899999999999999
Q ss_pred HHhcccC-----CCCchHHHHHHHHHHHHhCCCchhHH
Q 037483 149 NTKAFKT-----HKPLEECAKLSERVPQYAGGLPLALK 181 (693)
Q Consensus 149 ~~~~~~~-----~~~~~~~~~~~~~i~~~~~g~Plal~ 181 (693)
.+.+-.. .....-..+....|++.+.|....+.
T Consensus 178 ~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~ll 215 (725)
T PRK13341 178 KRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLL 215 (725)
T ss_pred HHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHH
Confidence 8766310 11111223445678888888754433
No 88
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=8.3e-06 Score=88.88 Aligned_cols=165 Identities=13% Similarity=0.108 Sum_probs=109.1
Q ss_pred cCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhc--------------------------
Q 037483 14 ETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISH-------------------------- 67 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-------------------------- 67 (693)
..-+++||-+..++.|..++..+. -.+.+.++|+.|+||||+|+.+++.+--
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~r--l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g 90 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQR--LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSG 90 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcC
Confidence 344689999999999999988642 3578899999999999999999876421
Q ss_pred ccceeEEEEcc--c---------------CCCCCeEEEEEecCCChh--hhhHHhcCCCcCCCCceEEEEeCC-hHHHHH
Q 037483 68 EFEGSSFLVDE--V---------------GCNTKKVLLVIDDVVDIK--QLEYLVGKREWFGSGSRIIITSRD-EHLLKT 127 (693)
Q Consensus 68 ~f~~~~~~~~~--~---------------~~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTtR~-~~~~~~ 127 (693)
.+.....+... . ...++.-++|||+++... ....+...+......+++|++|.+ ..+...
T Consensus 91 ~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~T 170 (618)
T PRK14951 91 RFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVT 170 (618)
T ss_pred CCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHH
Confidence 12223333221 1 134456689999998653 366666666554556666655544 333322
Q ss_pred -cCCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHH
Q 037483 128 -HGVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKV 182 (693)
Q Consensus 128 -~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 182 (693)
......+++..++.++..+.+.+.+....... ..+....|++.++|.+.-+..
T Consensus 171 IlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i--e~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 171 VLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA--EPQALRLLARAARGSMRDALS 224 (618)
T ss_pred HHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHH
Confidence 23356899999999999999988764333222 223466788888887754443
No 89
>PRK05642 DNA replication initiation factor; Validated
Probab=98.48 E-value=2.2e-06 Score=83.11 Aligned_cols=141 Identities=19% Similarity=0.181 Sum_probs=87.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc----------CCCCCeEEEEEecCCCh---hhhhH-HhcCC
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV----------GCNTKKVLLVIDDVVDI---KQLEY-LVGKR 106 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~----------~~~~~~~LlvlDdv~~~---~~~~~-l~~~~ 106 (693)
...+.|+|.+|+|||.|++++++.+..+-..++|+.... ....- =++|+||++.. .+|+. +...+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~-d~LiiDDi~~~~~~~~~~~~Lf~l~ 123 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPELLDNLEQY-ELVCLDDLDVIAGKADWEEALFHLF 123 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhhHHHHHhhhhC-CEEEEechhhhcCChHHHHHHHHHH
Confidence 367899999999999999999987765444556665521 11112 26889999633 23332 33332
Q ss_pred Cc-CCCCceEEEEeCChH---------HHHHcCCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCC
Q 037483 107 EW-FGSGSRIIITSRDEH---------LLKTHGVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGL 176 (693)
Q Consensus 107 ~~-~~~~~~iliTtR~~~---------~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 176 (693)
+. ...|..+|+|++... +..+.....+++++++++++-.+++..++....... ..+...-|++++.|-
T Consensus 124 n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l--~~ev~~~L~~~~~~d 201 (234)
T PRK05642 124 NRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHL--TDEVGHFILTRGTRS 201 (234)
T ss_pred HHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHhcCCC
Confidence 21 135778899887532 233334456789999999999999986663322111 124455666666666
Q ss_pred chhHHHHh
Q 037483 177 PLALKVLG 184 (693)
Q Consensus 177 Plal~~~~ 184 (693)
...+..+-
T Consensus 202 ~r~l~~~l 209 (234)
T PRK05642 202 MSALFDLL 209 (234)
T ss_pred HHHHHHHH
Confidence 55444433
No 90
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.47 E-value=1.7e-08 Score=107.30 Aligned_cols=174 Identities=29% Similarity=0.313 Sum_probs=116.9
Q ss_pred cCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCccccc
Q 037483 334 LSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLEN 413 (693)
Q Consensus 334 l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~ 413 (693)
+..+++|..|++.+|.+.. +...+..+++|++|++++|.|+.+. .+..++.|+.|++++|.+...
T Consensus 91 l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~------------- 155 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDI------------- 155 (414)
T ss_pred cccccceeeeeccccchhh-cccchhhhhcchheecccccccccc-chhhccchhhheeccCcchhc-------------
Confidence 5667777788887765433 2222566777888888888777764 366667788888887743221
Q ss_pred ccccccCCCCccEEecCCCccccCCCc-cccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCc
Q 037483 414 VSETLGQVEILEELDISGTTIREPPSS-IFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCS 492 (693)
Q Consensus 414 lp~~l~~l~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 492 (693)
..+..+++|+.+++++|.+..+... ...+.+++.+.+.+|.+.... .+..+..
T Consensus 156 --~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~------------------------~~~~~~~ 209 (414)
T KOG0531|consen 156 --SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE------------------------GLDLLKK 209 (414)
T ss_pred --cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc------------------------chHHHHH
Confidence 1123367778888888877776443 467777777778777665442 2333345
Q ss_pred CCeeeCCCCCCCCCCCCccCCCCCC--CCEEeCCCCCCcccCccccCCCCCCEEecccccc
Q 037483 493 LSKLDLSYCGLGEGAIPNDIGNLCS--LKELYLSKNNFVTLPASISGLLNLKELELEDCAL 551 (693)
Q Consensus 493 L~~L~ls~n~l~~~~~p~~l~~l~~--L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~ 551 (693)
+..+++..|.++. + ..+..+.. |+.+++++|.+..++..+..+..+..|++.+|++
T Consensus 210 l~~~~l~~n~i~~--~-~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~ 267 (414)
T KOG0531|consen 210 LVLLSLLDNKISK--L-EGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRI 267 (414)
T ss_pred HHHhhccccccee--c-cCcccchhHHHHHHhcccCccccccccccccccccccchhhccc
Confidence 5555777777732 1 22333444 8999999999998877888899999999999876
No 91
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.47 E-value=1.7e-09 Score=113.46 Aligned_cols=100 Identities=28% Similarity=0.276 Sum_probs=46.6
Q ss_pred ccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCeeeCCCCCC
Q 037483 424 LEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCGL 503 (693)
Q Consensus 424 L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l 503 (693)
|...+.++|.+..+..++.-++.|+.|+|++|++.... .+..|+.|++|||++|.+
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~------------------------~Lr~l~~LkhLDlsyN~L 221 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD------------------------NLRRLPKLKHLDLSYNCL 221 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH------------------------HHHhcccccccccccchh
Confidence 34444444544444444444555555555555443321 344445555555555554
Q ss_pred CCCCCCcc-CCCCCCCCEEeCCCCCCcccCccccCCCCCCEEecccccc
Q 037483 504 GEGAIPND-IGNLCSLKELYLSKNNFVTLPASISGLLNLKELELEDCAL 551 (693)
Q Consensus 504 ~~~~~p~~-l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~ 551 (693)
.. +|.. ...+ .|+.|+|++|.++.+- .+.++.+|+.||+++|-+
T Consensus 222 ~~--vp~l~~~gc-~L~~L~lrnN~l~tL~-gie~LksL~~LDlsyNll 266 (1096)
T KOG1859|consen 222 RH--VPQLSMVGC-KLQLLNLRNNALTTLR-GIENLKSLYGLDLSYNLL 266 (1096)
T ss_pred cc--ccccchhhh-hheeeeecccHHHhhh-hHHhhhhhhccchhHhhh
Confidence 22 3321 1112 2555555555555444 445555555555555544
No 92
>PF13173 AAA_14: AAA domain
Probab=98.47 E-value=5.4e-07 Score=78.49 Aligned_cols=102 Identities=23% Similarity=0.220 Sum_probs=72.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc-----------------CCCCCeEEEEEecCCChhhhhHHh
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV-----------------GCNTKKVLLVIDDVVDIKQLEYLV 103 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~-----------------~~~~~~~LlvlDdv~~~~~~~~l~ 103 (693)
.+++.|.|+.|+||||++++++++.. .-...+++..+. ....++.+++||+++...+|....
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~~~~~~~l 80 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYLPDWEDAL 80 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhhccHHHHH
Confidence 36899999999999999999998665 122233332210 022367899999999988887776
Q ss_pred cCCCcCCCCceEEEEeCChHHHHHc------CCCceeeCCCCCHHH
Q 037483 104 GKREWFGSGSRIIITSRDEHLLKTH------GVDELCEPNGLNYDE 143 (693)
Q Consensus 104 ~~~~~~~~~~~iliTtR~~~~~~~~------~~~~~~~l~~L~~~e 143 (693)
..+....+..+|++|+......... +....+++.+|+..|
T Consensus 81 k~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 81 KFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred HHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 6655555678999999987655331 223467888888776
No 93
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.47 E-value=2.3e-06 Score=91.86 Aligned_cols=162 Identities=15% Similarity=0.080 Sum_probs=104.5
Q ss_pred ccCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc---------------------cce
Q 037483 13 SETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHE---------------------FEG 71 (693)
Q Consensus 13 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---------------------f~~ 71 (693)
|..-.+++|++..++.+.+.+..+. -.+.+.++|+.|+||||+|+.+++.+... .+.
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~r--l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~D 89 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNNK--LTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVD 89 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC--CCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCc
Confidence 3445689999999999999887542 35789999999999999999998865210 122
Q ss_pred eEEEEcc--c---------------CCCCCeEEEEEecCCCh--hhhhHHhcCCCcCCCCceEEEEe-CChHHHHH-cCC
Q 037483 72 SSFLVDE--V---------------GCNTKKVLLVIDDVVDI--KQLEYLVGKREWFGSGSRIIITS-RDEHLLKT-HGV 130 (693)
Q Consensus 72 ~~~~~~~--~---------------~~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTt-R~~~~~~~-~~~ 130 (693)
..++... . ...+++-++|+|+++.. .....|...+....+.+.+|++| ....+... ...
T Consensus 90 iieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SR 169 (605)
T PRK05896 90 IVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISR 169 (605)
T ss_pred eEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhh
Confidence 2333321 1 12233446999999764 34555655544334455555544 43344322 233
Q ss_pred CceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCch
Q 037483 131 DELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPL 178 (693)
Q Consensus 131 ~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 178 (693)
...+++.+++.++....+...+-...... ..+.+..+++.++|.+.
T Consensus 170 cq~ieF~~Ls~~eL~~~L~~il~kegi~I--s~eal~~La~lS~GdlR 215 (605)
T PRK05896 170 CQRYNFKKLNNSELQELLKSIAKKEKIKI--EDNAIDKIADLADGSLR 215 (605)
T ss_pred hhhcccCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHH
Confidence 56889999999999999888763322111 12346678888998764
No 94
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=1.8e-06 Score=90.10 Aligned_cols=163 Identities=12% Similarity=0.039 Sum_probs=107.1
Q ss_pred ccCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccc---------------------ce
Q 037483 13 SETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEF---------------------EG 71 (693)
Q Consensus 13 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f---------------------~~ 71 (693)
|..-.++||.+..+..|..++..+. -.+.+.++|++|+||||+|+.+++.+.... ..
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~r--i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~d 91 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGK--IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSD 91 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCcc
Confidence 3444689999999999999988643 246789999999999999999998653211 01
Q ss_pred eEEEEc--cc---------------CCCCCeEEEEEecCCCh--hhhhHHhcCCCcCCCCceEEEEeC-ChHHHHHc-CC
Q 037483 72 SSFLVD--EV---------------GCNTKKVLLVIDDVVDI--KQLEYLVGKREWFGSGSRIIITSR-DEHLLKTH-GV 130 (693)
Q Consensus 72 ~~~~~~--~~---------------~~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTtR-~~~~~~~~-~~ 130 (693)
...+.. .. ...++.-++|+|+++.. +.++.++..+........+|.+|. ...+.... ..
T Consensus 92 viEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SR 171 (484)
T PRK14956 92 VLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSR 171 (484)
T ss_pred ceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhh
Confidence 111111 00 13456779999999765 346777666654444555554444 44443222 23
Q ss_pred CceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchh
Q 037483 131 DELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLA 179 (693)
Q Consensus 131 ~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 179 (693)
...|.+.+++.++..+.+.+.+-..... -..+....|++.++|.+.-
T Consensus 172 Cq~~~f~~ls~~~i~~~L~~i~~~Egi~--~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 172 CQDFIFKKVPLSVLQDYSEKLCKIENVQ--YDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred hheeeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCChHHH
Confidence 4679999999999999888876332221 1234467799999998843
No 95
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.46 E-value=3.2e-08 Score=105.21 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=18.1
Q ss_pred hcCccccceeccCCcCceeecCCcCCCCCCCEEecCCC
Q 037483 358 VASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDC 395 (693)
Q Consensus 358 ~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~ 395 (693)
+..+++|+.|++.+|.|..+...+..+++|++|++++|
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N 128 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN 128 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheecccc
Confidence 33444455555555555444333444455555555554
No 96
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.46 E-value=3.2e-09 Score=111.42 Aligned_cols=177 Identities=26% Similarity=0.251 Sum_probs=104.6
Q ss_pred ccccCCCCCCcEEEcCCCCCcccchhhhcCc-cccceeccCCcCceee----c---CCcCC---CCCCCEEecCCCCCCc
Q 037483 331 LISLSSLKCLRTLELSGCSKLKRFLEIVASM-EDLSELYLDGTFITKL----P---LSIEL---LTGLELLNLNDCKNLL 399 (693)
Q Consensus 331 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~L~~~~l~~l----~---~~~~~---l~~L~~L~L~~~~~~~ 399 (693)
|+++..|..||+|.+.+|.+.... .+..+ ..|+.|.-.+ .+..+ . ..+.+ ...|.+.+.++|
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~--GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN---- 174 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAK--GLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSPVWNKLATASFSYN---- 174 (1096)
T ss_pred CceeccccceeeEEecCcchhhhh--hhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccchhhhhHhhhhcchh----
Confidence 456777889999999998754310 01111 1233332221 11110 0 01111 123445555544
Q ss_pred cCCCCCCCCcccccccccccCCCCccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCch
Q 037483 400 RLPSSIDGCFKLENVSETLGQVEILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYP 479 (693)
Q Consensus 400 ~lp~~~~~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (693)
.|..+..++.-++.|+.|+|++|+++... .+..|++|++|||++|.+...+..
T Consensus 175 ----------~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l---------------- 227 (1096)
T KOG1859|consen 175 ----------RLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQL---------------- 227 (1096)
T ss_pred ----------hHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhcccccc----------------
Confidence 55556666666777888888888877764 677788888888888766544321
Q ss_pred hhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccC--ccccCCCCCCEEecccccc
Q 037483 480 VALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLP--ASISGLLNLKELELEDCAL 551 (693)
Q Consensus 480 ~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~L~~n~~ 551 (693)
.-.++ .|+.|.+++|.+++ ...+.++.+|+.||+++|-+.... ..+..+..|+.|+|.+|++
T Consensus 228 ------~~~gc-~L~~L~lrnN~l~t---L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 228 ------SMVGC-KLQLLNLRNNALTT---LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ------chhhh-hheeeeecccHHHh---hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 12222 37778888887743 245667778888888888655222 2355667788888888877
No 97
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=1.2e-05 Score=84.21 Aligned_cols=165 Identities=17% Similarity=0.190 Sum_probs=104.9
Q ss_pred ccCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhc--------ccceeEEEEccc-----
Q 037483 13 SETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISH--------EFEGSSFLVDEV----- 79 (693)
Q Consensus 13 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~--------~f~~~~~~~~~~----- 79 (693)
|..-++++|.+...+.+.+.+..+. -.+.+.++|++|+|||++|+.+++.+.. .|....+-.+..
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~~--~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 90 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENNH--LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV 90 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH
Confidence 3445788999999999999997532 3578999999999999999999887643 222222211110
Q ss_pred -------------CCCCCeEEEEEecCCChh--hhhHHhcCCCcCCCCceEEEEeC-ChHHHHH-cCCCceeeCCCCCHH
Q 037483 80 -------------GCNTKKVLLVIDDVVDIK--QLEYLVGKREWFGSGSRIIITSR-DEHLLKT-HGVDELCEPNGLNYD 142 (693)
Q Consensus 80 -------------~~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTtR-~~~~~~~-~~~~~~~~l~~L~~~ 142 (693)
...+++-++++|+++... .++.+...+......+.+|++|. ...+... ......+++++++++
T Consensus 91 ~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~ 170 (367)
T PRK14970 91 DDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIK 170 (367)
T ss_pred HHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHH
Confidence 123455689999997543 35555444333334555555553 3232221 223457899999999
Q ss_pred HHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHH
Q 037483 143 EALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALK 181 (693)
Q Consensus 143 ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 181 (693)
+...++...+-...... ..+.+..+++.++|.+..+.
T Consensus 171 ~l~~~l~~~~~~~g~~i--~~~al~~l~~~~~gdlr~~~ 207 (367)
T PRK14970 171 DIKEHLAGIAVKEGIKF--EDDALHIIAQKADGALRDAL 207 (367)
T ss_pred HHHHHHHHHHHHcCCCC--CHHHHHHHHHhCCCCHHHHH
Confidence 99999888764333211 23456778888888765433
No 98
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.44 E-value=2.5e-06 Score=93.01 Aligned_cols=166 Identities=17% Similarity=0.157 Sum_probs=110.7
Q ss_pred cCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhc---------------------cccee
Q 037483 14 ETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISH---------------------EFEGS 72 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~---------------------~f~~~ 72 (693)
..-.++||.+..++.|...+..+. -.+.+.++|+.|+||||+|+.+++.+-. .|...
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~r--l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ 90 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGR--LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDL 90 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCc
Confidence 445789999999999999987642 2466899999999999999999875422 12233
Q ss_pred EEEEcc--c---------------CCCCCeEEEEEecCCChh--hhhHHhcCCCcCCCCceEEEEeCC-hHHHHH-cCCC
Q 037483 73 SFLVDE--V---------------GCNTKKVLLVIDDVVDIK--QLEYLVGKREWFGSGSRIIITSRD-EHLLKT-HGVD 131 (693)
Q Consensus 73 ~~~~~~--~---------------~~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTtR~-~~~~~~-~~~~ 131 (693)
+.+... . ...++.-++|||+++... ....|+..+.......++|++|.+ ..+... ....
T Consensus 91 ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC 170 (647)
T PRK07994 91 IEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 (647)
T ss_pred eeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhh
Confidence 333321 1 144677799999997653 466666665554556655555544 444322 2235
Q ss_pred ceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHH
Q 037483 132 ELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVL 183 (693)
Q Consensus 132 ~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 183 (693)
..+.+.+++.++..+.+.+.+-...... ..+....|++.++|.+.....+
T Consensus 171 ~~~~f~~Ls~~ei~~~L~~il~~e~i~~--e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 171 LQFHLKALDVEQIRQQLEHILQAEQIPF--EPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred eEeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 6899999999999999987653222221 2234567889999988644433
No 99
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.42 E-value=4.9e-07 Score=87.84 Aligned_cols=132 Identities=20% Similarity=0.271 Sum_probs=89.8
Q ss_pred CccCCCCccccchhHHH---HHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc---------
Q 037483 12 KSETLKKLVRIDSCLEE---LRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV--------- 79 (693)
Q Consensus 12 ~~~~~~~~vGr~~~~~~---l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~--------- 79 (693)
-|...+++||.+..+.+ |.+++. .++...+.+||++|+||||||+.++..-+.+- ..|+....
T Consensus 133 RPktL~dyvGQ~hlv~q~gllrs~ie---q~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfvelSAt~a~t~dvR 207 (554)
T KOG2028|consen 133 RPKTLDDYVGQSHLVGQDGLLRSLIE---QNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVELSATNAKTNDVR 207 (554)
T ss_pred CcchHHHhcchhhhcCcchHHHHHHH---cCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEEEeccccchHHHH
Confidence 34555778888776654 333333 34678899999999999999999998655442 33443211
Q ss_pred ----------CCCCCeEEEEEecCCC--hhhhhHHhcCCCcCCCCceEEE--EeCChHH---HHHcCCCceeeCCCCCHH
Q 037483 80 ----------GCNTKKVLLVIDDVVD--IKQLEYLVGKREWFGSGSRIII--TSRDEHL---LKTHGVDELCEPNGLNYD 142 (693)
Q Consensus 80 ----------~~~~~~~LlvlDdv~~--~~~~~~l~~~~~~~~~~~~ili--TtR~~~~---~~~~~~~~~~~l~~L~~~ 142 (693)
.+.++|.++.+|.|+. ..|-+.+++.. ..|..++| ||-++.. ........++.+++|..+
T Consensus 208 ~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~V---E~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n 284 (554)
T KOG2028|consen 208 DIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHV---ENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVN 284 (554)
T ss_pred HHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhccccee---ccCceEEEecccCCCccchhHHHHhccceeEeccCCHH
Confidence 3778999999999964 34445555442 46776666 6665432 222344568899999999
Q ss_pred HHHHHHHHh
Q 037483 143 EALQLLNTK 151 (693)
Q Consensus 143 ea~~l~~~~ 151 (693)
+...++.+.
T Consensus 285 ~v~~iL~ra 293 (554)
T KOG2028|consen 285 AVVTILMRA 293 (554)
T ss_pred HHHHHHHHH
Confidence 999998873
No 100
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.42 E-value=1.4e-06 Score=78.19 Aligned_cols=100 Identities=21% Similarity=0.226 Sum_probs=67.0
Q ss_pred cccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc--------------------
Q 037483 20 VRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV-------------------- 79 (693)
Q Consensus 20 vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~-------------------- 79 (693)
+||++.+..+...+... ..+.+.|+|++|+|||++|+++++.+...-....++....
T Consensus 1 ~~~~~~~~~i~~~~~~~---~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (151)
T cd00009 1 VGQEEAIEALREALELP---PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLF 77 (151)
T ss_pred CchHHHHHHHHHHHhCC---CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHH
Confidence 47888999998888653 3467999999999999999999998753333333433310
Q ss_pred --CCCCCeEEEEEecCCCh--hh---hhHHhcCCCcC---CCCceEEEEeCCh
Q 037483 80 --GCNTKKVLLVIDDVVDI--KQ---LEYLVGKREWF---GSGSRIIITSRDE 122 (693)
Q Consensus 80 --~~~~~~~LlvlDdv~~~--~~---~~~l~~~~~~~---~~~~~iliTtR~~ 122 (693)
....++.++|+||++.. .. +.......... ..+..+|+||...
T Consensus 78 ~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 78 ELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred HhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 13346789999999854 12 22222322211 3678888888864
No 101
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=9.5e-06 Score=87.96 Aligned_cols=162 Identities=15% Similarity=0.116 Sum_probs=106.7
Q ss_pred cCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhc---------------------cccee
Q 037483 14 ETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISH---------------------EFEGS 72 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~---------------------~f~~~ 72 (693)
..-.++||-+..++.|..++..+. -.+.+.++|++|+||||+|+.+++.+-- .|...
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~~--~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQR--LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCC--CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 344689999999999999988632 3567899999999999999999886521 12233
Q ss_pred EEEEcc--c---------------CCCCCeEEEEEecCCChhh--hhHHhcCCCcCCCCceEEEEeCC-hHHHHH-cCCC
Q 037483 73 SFLVDE--V---------------GCNTKKVLLVIDDVVDIKQ--LEYLVGKREWFGSGSRIIITSRD-EHLLKT-HGVD 131 (693)
Q Consensus 73 ~~~~~~--~---------------~~~~~~~LlvlDdv~~~~~--~~~l~~~~~~~~~~~~iliTtR~-~~~~~~-~~~~ 131 (693)
+.+... . ...+++-++|+|+++.... ...+...+......+.+|++|.+ ..+... ....
T Consensus 91 ~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc 170 (527)
T PRK14969 91 IEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRC 170 (527)
T ss_pred eEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHH
Confidence 333321 0 1345677999999986543 55566655544556666665544 332211 1224
Q ss_pred ceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchh
Q 037483 132 ELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLA 179 (693)
Q Consensus 132 ~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 179 (693)
..+++..++.++..+.+.+.+-..... ...+....|++.++|.+.-
T Consensus 171 ~~~~f~~l~~~~i~~~L~~il~~egi~--~~~~al~~la~~s~Gslr~ 216 (527)
T PRK14969 171 LQFNLKQMPPPLIVSHLQHILEQENIP--FDATALQLLARAAAGSMRD 216 (527)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 578999999999998887766322222 1223456788889998753
No 102
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=1.8e-05 Score=86.59 Aligned_cols=161 Identities=13% Similarity=0.064 Sum_probs=104.5
Q ss_pred cCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhc--------------------------
Q 037483 14 ETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISH-------------------------- 67 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-------------------------- 67 (693)
..-.++||-+..++.|.+.+..+. -.+.+.++|+.|+||||+|+.+++.+--
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~~r--i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRMDR--VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC--CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 344789999999999999887532 3567999999999999999999986522
Q ss_pred ----ccceeEEEEcc-c---------------CCCCCeEEEEEecCCChh--hhhHHhcCCCcCCCCceEEEEe-CChHH
Q 037483 68 ----EFEGSSFLVDE-V---------------GCNTKKVLLVIDDVVDIK--QLEYLVGKREWFGSGSRIIITS-RDEHL 124 (693)
Q Consensus 68 ----~f~~~~~~~~~-~---------------~~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTt-R~~~~ 124 (693)
+++...+-... . ...+++-++|+|+++... ..+.|...+....+.+.+|++| +...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 11111111100 0 133455678999997654 3556666555444555555444 44444
Q ss_pred HHH-cCCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCch
Q 037483 125 LKT-HGVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPL 178 (693)
Q Consensus 125 ~~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 178 (693)
... ......+++.+++.++....+...+-..... -..+.++.+++.++|...
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~--I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ--IDADALQLIARKAQGSMR 223 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHhCCCHH
Confidence 432 3345789999999999988887765322211 123346778899999665
No 103
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.39 E-value=3.1e-06 Score=81.01 Aligned_cols=165 Identities=19% Similarity=0.143 Sum_probs=94.1
Q ss_pred CCCccccchhH-HHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccc--eeEEEEccc-------------
Q 037483 16 LKKLVRIDSCL-EELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFE--GSSFLVDEV------------- 79 (693)
Q Consensus 16 ~~~~vGr~~~~-~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~~~~------------- 79 (693)
...++|-..+. -...+.+....+.....+.|||..|+|||.|.+++++.+.+..+ .+.++..+.
T Consensus 8 dnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~ 87 (219)
T PF00308_consen 8 DNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGE 87 (219)
T ss_dssp CCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTS
T ss_pred ccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHccc
Confidence 34446754443 34444454443333456899999999999999999998766543 245554311
Q ss_pred ------CCCCCeEEEEEecCCChhh---hh-HHhcCCC-cCCCCceEEEEeCCh---------HHHHHcCCCceeeCCCC
Q 037483 80 ------GCNTKKVLLVIDDVVDIKQ---LE-YLVGKRE-WFGSGSRIIITSRDE---------HLLKTHGVDELCEPNGL 139 (693)
Q Consensus 80 ------~~~~~~~LlvlDdv~~~~~---~~-~l~~~~~-~~~~~~~iliTtR~~---------~~~~~~~~~~~~~l~~L 139 (693)
+.. .-=++++||++.... |+ .+...++ ....|.+||+|++.. .+.......-+++++++
T Consensus 88 ~~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~p 166 (219)
T PF00308_consen 88 IEEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPP 166 (219)
T ss_dssp HHHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE---
T ss_pred chhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCC
Confidence 122 345789999965432 22 2222221 113577899999653 24445556678999999
Q ss_pred CHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHH
Q 037483 140 NYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVL 183 (693)
Q Consensus 140 ~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 183 (693)
++++..+++.+.+-..... -..+.++-|++.+.+..-.+..+
T Consensus 167 d~~~r~~il~~~a~~~~~~--l~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 167 DDEDRRRILQKKAKERGIE--LPEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp -HHHHHHHHHHHHHHTT----S-HHHHHHHHHHTTSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCC--CcHHHHHHHHHhhcCCHHHHHHH
Confidence 9999999999888443322 22334555666665555444433
No 104
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.39 E-value=1.2e-05 Score=87.95 Aligned_cols=166 Identities=16% Similarity=0.115 Sum_probs=110.3
Q ss_pred cCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccc------------------------
Q 037483 14 ETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEF------------------------ 69 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------------------------ 69 (693)
..-.+++|.+..++.|...+..+. -.+.+.++|+.|+||||+|+.+++.+--..
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~gr--i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g 98 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETGR--IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEG 98 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC--CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcC
Confidence 445689999999999999998643 356899999999999999999998653211
Q ss_pred --ceeEEEEcc--c---------------CCCCCeEEEEEecCCChh--hhhHHhcCCCcCCCCceEEEEe-CChHHHHH
Q 037483 70 --EGSSFLVDE--V---------------GCNTKKVLLVIDDVVDIK--QLEYLVGKREWFGSGSRIIITS-RDEHLLKT 127 (693)
Q Consensus 70 --~~~~~~~~~--~---------------~~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTt-R~~~~~~~ 127 (693)
....++... . ...+++-++|+|+++... ..+.|...+....+.+++|++| ....+...
T Consensus 99 ~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~t 178 (598)
T PRK09111 99 RHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVT 178 (598)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHH
Confidence 112232211 0 133455678999997654 3556666555445666666555 43443332
Q ss_pred c-CCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHH
Q 037483 128 H-GVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVL 183 (693)
Q Consensus 128 ~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 183 (693)
. .....+++..++.++..+++.+.+-...... ..+....|++.++|.+.-+...
T Consensus 179 I~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i--~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 179 VLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV--EDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 2 2356889999999999999988763332221 2245677899999988655443
No 105
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.39 E-value=3.7e-07 Score=67.70 Aligned_cols=59 Identities=22% Similarity=0.304 Sum_probs=35.9
Q ss_pred CCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecC-CcCCCCCCCEEecCCCC
Q 037483 338 KCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPL-SIELLTGLELLNLNDCK 396 (693)
Q Consensus 338 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~L~~~~ 396 (693)
|+|++|++++|.+....+..|.++++|++|++++|.++.+++ .+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 456666666665444444566666666666666666665543 45666666666666653
No 106
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=2.3e-05 Score=86.51 Aligned_cols=167 Identities=16% Similarity=0.112 Sum_probs=109.4
Q ss_pred cCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccc----------------------ce
Q 037483 14 ETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEF----------------------EG 71 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f----------------------~~ 71 (693)
..-+++||.+..++.|..++..+. -.+.+.++|+.|+||||+|+.+++.+.... ..
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~~~--i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d 90 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAEGR--VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVD 90 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCC--CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCe
Confidence 344689999999999999887542 356789999999999999999998653111 11
Q ss_pred eEEEEcc--c---------------CCCCCeEEEEEecCCCh--hhhhHHhcCCCcCCCCceEEEEeCC-hHHHHH-cCC
Q 037483 72 SSFLVDE--V---------------GCNTKKVLLVIDDVVDI--KQLEYLVGKREWFGSGSRIIITSRD-EHLLKT-HGV 130 (693)
Q Consensus 72 ~~~~~~~--~---------------~~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTtR~-~~~~~~-~~~ 130 (693)
.+.+... . ...+++-++|+|+++.. +..+.|...+....+.+.+|++|.+ ..+... ...
T Consensus 91 ~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR 170 (585)
T PRK14950 91 VIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSR 170 (585)
T ss_pred EEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhc
Confidence 1222210 0 13356778999999755 3466666555544556666666644 333322 223
Q ss_pred CceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHHh
Q 037483 131 DELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVLG 184 (693)
Q Consensus 131 ~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 184 (693)
...+++..++.++..+.+...+....... ..+.+..+++.++|.+..+...-
T Consensus 171 ~~~i~f~~l~~~el~~~L~~~a~~egl~i--~~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 171 CQRFDFHRHSVADMAAHLRKIAAAEGINL--EPGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred cceeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 45788999999999998888764333221 22456788999999886555443
No 107
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=2.1e-05 Score=85.13 Aligned_cols=170 Identities=14% Similarity=0.097 Sum_probs=110.7
Q ss_pred cCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc---------------------ccee
Q 037483 14 ETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHE---------------------FEGS 72 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---------------------f~~~ 72 (693)
..-.+++|-+..++.|...+..+. -.+.+.++|+.|+||||+|+.+++.+--. ....
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~~r--i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv 90 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQENR--VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDV 90 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHcCC--CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCce
Confidence 334678999988888998887532 25789999999999999999999865321 1223
Q ss_pred EEEEcc--c---------------CCCCCeEEEEEecCCCh--hhhhHHhcCCCcCCCCceEEEEeCC-hHHHHH-cCCC
Q 037483 73 SFLVDE--V---------------GCNTKKVLLVIDDVVDI--KQLEYLVGKREWFGSGSRIIITSRD-EHLLKT-HGVD 131 (693)
Q Consensus 73 ~~~~~~--~---------------~~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTtR~-~~~~~~-~~~~ 131 (693)
.++... . ...+++-++|+|+++.. +....|...+....+...+|++|.+ ..+... ....
T Consensus 91 ~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRc 170 (624)
T PRK14959 91 VEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRC 170 (624)
T ss_pred EEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhh
Confidence 333221 1 13456679999999765 3356666655443455656665554 343322 2234
Q ss_pred ceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCc-hhHHHHhhhh
Q 037483 132 ELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLP-LALKVLGSFL 187 (693)
Q Consensus 132 ~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~~~~l 187 (693)
..+++.+++.++..+.+...+....... ..+.+..|++.++|.+ .|+..+...+
T Consensus 171 q~i~F~pLs~~eL~~~L~~il~~egi~i--d~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 171 QHFTFTRLSEAGLEAHLTKVLGREGVDY--DPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hccccCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5789999999999999988664332211 2344677888899865 5666665433
No 108
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=4.1e-05 Score=81.98 Aligned_cols=167 Identities=13% Similarity=0.062 Sum_probs=108.0
Q ss_pred cCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhc---------------------cccee
Q 037483 14 ETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISH---------------------EFEGS 72 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~---------------------~f~~~ 72 (693)
..-.+++|-+..++.+...+..+. -.+...++|+.|+||||+|+.++..+-. .+...
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~~~--i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKLQR--VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 344679999999999999997643 3567889999999999999999886531 12222
Q ss_pred EEEEcc--c---------------CCCCCeEEEEEecCCChh--hhhHHhcCCCcCCCCceEEEEe-CChHHHHH-cCCC
Q 037483 73 SFLVDE--V---------------GCNTKKVLLVIDDVVDIK--QLEYLVGKREWFGSGSRIIITS-RDEHLLKT-HGVD 131 (693)
Q Consensus 73 ~~~~~~--~---------------~~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTt-R~~~~~~~-~~~~ 131 (693)
..+... . ...+++-++|+|+++... ..+.+...+....+...+|++| +...+... ....
T Consensus 91 ~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc 170 (486)
T PRK14953 91 IEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRC 170 (486)
T ss_pred EEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhc
Confidence 333220 1 134567799999997653 3555655554444455555554 43333322 2334
Q ss_pred ceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHHh
Q 037483 132 ELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVLG 184 (693)
Q Consensus 132 ~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 184 (693)
..+++.+++.++...++...+-...... ..+.+..+++.++|.+..+....
T Consensus 171 ~~i~f~~ls~~el~~~L~~i~k~egi~i--d~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 171 QRFIFSKPTKEQIKEYLKRICNEEKIEY--EEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred eEEEcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 5789999999999998888663322221 22346678888999876554443
No 109
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=3.7e-05 Score=83.61 Aligned_cols=166 Identities=19% Similarity=0.140 Sum_probs=108.5
Q ss_pred cCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc-----------------------cc
Q 037483 14 ETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHE-----------------------FE 70 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----------------------f~ 70 (693)
..-.++||.+..++.|..++..+. -.+.+.++|+.|+||||+|+.+++.+--. ..
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~~r--~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~ 87 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDAGR--INHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSI 87 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCc
Confidence 344689999999999999998642 35678999999999999999999765311 11
Q ss_pred eeEEEEcc-c-C---------------CCCCeEEEEEecCCCh--hhhhHHhcCCCcCCCCceEEEEe-CChHHHHH-cC
Q 037483 71 GSSFLVDE-V-G---------------CNTKKVLLVIDDVVDI--KQLEYLVGKREWFGSGSRIIITS-RDEHLLKT-HG 129 (693)
Q Consensus 71 ~~~~~~~~-~-~---------------~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTt-R~~~~~~~-~~ 129 (693)
.++.+... . + ..+++-++|+|+++.. ...+.|+..+......+.+|++| ....+... ..
T Consensus 88 dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~S 167 (584)
T PRK14952 88 DVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRS 167 (584)
T ss_pred eEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHH
Confidence 12222221 0 1 2356668999999755 34566666665555566655555 44444432 23
Q ss_pred CCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCch-hHHHH
Q 037483 130 VDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPL-ALKVL 183 (693)
Q Consensus 130 ~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 183 (693)
....+++..++.++..+++.+.+-...... ..+....|++..+|.+. |+..+
T Consensus 168 Rc~~~~F~~l~~~~i~~~L~~i~~~egi~i--~~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 168 RTHHYPFRLLPPRTMRALIARICEQEGVVV--DDAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred hceEEEeeCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 356899999999999998887664332222 22345678888999875 44443
No 110
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.34 E-value=2.7e-06 Score=86.80 Aligned_cols=133 Identities=25% Similarity=0.413 Sum_probs=75.7
Q ss_pred CCCCCcEEEcCCCCCcccchhhhcCccccceeccCCc-CceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCcccccc
Q 037483 336 SLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGT-FITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLENV 414 (693)
Q Consensus 336 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~-~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~l 414 (693)
.+++++.|++++| .+..+|. -.++|++|.+++| .++.+|..+ .++|++|++++|..+..+|
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------------ 111 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------------ 111 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------------
Confidence 3466778888877 3455552 1235788888764 556666544 2578888888774433333
Q ss_pred cccccCCCCccEEecCCCcc---ccCCCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccC-CC
Q 037483 415 SETLGQVEILEELDISGTTI---REPPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLS-GL 490 (693)
Q Consensus 415 p~~l~~l~~L~~L~l~~n~i---~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~l 490 (693)
. +|+.|+++.+.. ..+|. +|+.|.+.++...... .+. .+
T Consensus 112 -~------sLe~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~------------------------~lp~~L 154 (426)
T PRK15386 112 -E------SVRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQA------------------------RIDNLI 154 (426)
T ss_pred -c------ccceEEeCCCCCcccccCcc------hHhheecccccccccc------------------------cccccc
Confidence 2 355666665543 33443 3455655432211000 001 12
Q ss_pred -CcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCC
Q 037483 491 -CSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNN 527 (693)
Q Consensus 491 -~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~ 527 (693)
++|+.|++++|.... +|..+. .+|+.|+++.|.
T Consensus 155 PsSLk~L~Is~c~~i~--LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 155 SPSLKTLSLTGCSNII--LPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred CCcccEEEecCCCccc--Cccccc--ccCcEEEecccc
Confidence 579999999887632 454433 588899988764
No 111
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.32 E-value=3.2e-05 Score=82.25 Aligned_cols=162 Identities=14% Similarity=0.145 Sum_probs=105.6
Q ss_pred cCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc-----------------------cc
Q 037483 14 ETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHE-----------------------FE 70 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----------------------f~ 70 (693)
..-++++|.+..++.|.+.+..+. -.+.+.++|++|+||||+|+.+++.+-.. ++
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~~--i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFNR--AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC--CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 445789999999999999987532 25778999999999999999998865321 11
Q ss_pred eeEEEEc--ccC---------------CCCCeEEEEEecCCChh--hhhHHhcCCCcCCCCceEEEEeCC-hHHHHH-cC
Q 037483 71 GSSFLVD--EVG---------------CNTKKVLLVIDDVVDIK--QLEYLVGKREWFGSGSRIIITSRD-EHLLKT-HG 129 (693)
Q Consensus 71 ~~~~~~~--~~~---------------~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTtR~-~~~~~~-~~ 129 (693)
...+.. ..+ ..+++-++|+|+++... ..+.|...+....+.+.+|++|.. ..+... ..
T Consensus 92 -~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~s 170 (451)
T PRK06305 92 -VLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILS 170 (451)
T ss_pred -eEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHH
Confidence 122221 111 23566789999997553 345555555544456666666643 333222 22
Q ss_pred CCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhH
Q 037483 130 VDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLAL 180 (693)
Q Consensus 130 ~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 180 (693)
....+++.++++++..+.+...+-..... -..+.+..|+++++|.+.-+
T Consensus 171 Rc~~v~f~~l~~~el~~~L~~~~~~eg~~--i~~~al~~L~~~s~gdlr~a 219 (451)
T PRK06305 171 RCQKMHLKRIPEETIIDKLALIAKQEGIE--TSREALLPIARAAQGSLRDA 219 (451)
T ss_pred hceEEeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 34678999999999999888766332211 12345677889999977533
No 112
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.31 E-value=3.6e-05 Score=84.68 Aligned_cols=164 Identities=14% Similarity=0.091 Sum_probs=106.9
Q ss_pred ccCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhc-c-----------------cceeEE
Q 037483 13 SETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISH-E-----------------FEGSSF 74 (693)
Q Consensus 13 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~-----------------f~~~~~ 74 (693)
|..-.+++|.+..++.|...+..+. -.+.+.++|+.|+||||+|+.+++.+-. + ....+.
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~r--l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvie 91 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSNK--ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIE 91 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEE
Confidence 3344689999999999999997642 3677899999999999999999876421 1 011122
Q ss_pred EEcc--c---------------CCCCCeEEEEEecCCChh--hhhHHhcCCCcCCCCceEE-EEeCChHHHHH-cCCCce
Q 037483 75 LVDE--V---------------GCNTKKVLLVIDDVVDIK--QLEYLVGKREWFGSGSRII-ITSRDEHLLKT-HGVDEL 133 (693)
Q Consensus 75 ~~~~--~---------------~~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~il-iTtR~~~~~~~-~~~~~~ 133 (693)
+... . ...+++-++|+|+++... .+..|...+....+.+.+| +|++...+... ......
T Consensus 92 idaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ 171 (725)
T PRK07133 92 MDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQR 171 (725)
T ss_pred EeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhcee
Confidence 2210 0 134567789999997653 4666666555444555544 45444444432 233568
Q ss_pred eeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhH
Q 037483 134 CEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLAL 180 (693)
Q Consensus 134 ~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 180 (693)
+++.+++.++..+.+...+-...... ..+.+..+++.++|.+.-+
T Consensus 172 ieF~~L~~eeI~~~L~~il~kegI~i--d~eAl~~LA~lS~GslR~A 216 (725)
T PRK07133 172 FNFRRISEDEIVSRLEFILEKENISY--EKNALKLIAKLSSGSLRDA 216 (725)
T ss_pred EEccCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 99999999999998887653222211 2234667888998877533
No 113
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.30 E-value=2.9e-05 Score=87.88 Aligned_cols=163 Identities=13% Similarity=0.100 Sum_probs=107.3
Q ss_pred CCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhc-----------------------ccce
Q 037483 15 TLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISH-----------------------EFEG 71 (693)
Q Consensus 15 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-----------------------~f~~ 71 (693)
.-.++||.+..++.|...+..+. -.+.+.++|+.|+||||+|+.+++.+-- .+..
T Consensus 13 ~f~eiiGqe~v~~~L~~~i~~~r--i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d 90 (824)
T PRK07764 13 TFAEVIGQEHVTEPLSTALDSGR--INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD 90 (824)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc
Confidence 34689999999999999988643 3467899999999999999999886531 0111
Q ss_pred eEEEEc-c-c---------------CCCCCeEEEEEecCCChh--hhhHHhcCCCcCCCCceEEEEeCC-hHHHHH-cCC
Q 037483 72 SSFLVD-E-V---------------GCNTKKVLLVIDDVVDIK--QLEYLVGKREWFGSGSRIIITSRD-EHLLKT-HGV 130 (693)
Q Consensus 72 ~~~~~~-~-~---------------~~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTtR~-~~~~~~-~~~ 130 (693)
++++.. . . ...++.-++|||+++... ....|+..+......+.+|++|.+ ..+... ...
T Consensus 91 v~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSR 170 (824)
T PRK07764 91 VTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSR 170 (824)
T ss_pred EEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhh
Confidence 223322 1 0 134556688999998654 355666666555566666655543 344433 233
Q ss_pred CceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHH
Q 037483 131 DELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALK 181 (693)
Q Consensus 131 ~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 181 (693)
...|++..++.++..+++.+.+-...... ..+....|++.++|.+..+.
T Consensus 171 c~~v~F~~l~~~~l~~~L~~il~~EGv~i--d~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 171 THHYPFRLVPPEVMRGYLERICAQEGVPV--EPGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred eeEEEeeCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 56889999999999988887653222211 22345678889999884433
No 114
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.26 E-value=0.00012 Score=78.57 Aligned_cols=166 Identities=16% Similarity=0.096 Sum_probs=109.8
Q ss_pred cCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhc-c-------------------cce-e
Q 037483 14 ETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISH-E-------------------FEG-S 72 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~-------------------f~~-~ 72 (693)
..-.++||-+...+.|...+..+. -.++..++|+.|+||||+|+.+++.+-. . +.. .
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~gr--l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNNR--LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC--CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 445789999999999999987542 3567899999999999999999886521 1 111 1
Q ss_pred EEEEcc--c---------------CCCCCeEEEEEecCCChh--hhhHHhcCCCcCCCCceEEEEeCCh-HHHHH-cCCC
Q 037483 73 SFLVDE--V---------------GCNTKKVLLVIDDVVDIK--QLEYLVGKREWFGSGSRIIITSRDE-HLLKT-HGVD 131 (693)
Q Consensus 73 ~~~~~~--~---------------~~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTtR~~-~~~~~-~~~~ 131 (693)
..+... . ...+++-++|+|+++... ..+.|...+....+.+++|++|.+. .+... ....
T Consensus 89 ~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc 168 (535)
T PRK08451 89 IEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRT 168 (535)
T ss_pred EEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhc
Confidence 222111 0 122466789999997653 3566666655555677777777663 22211 1234
Q ss_pred ceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHH
Q 037483 132 ELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVL 183 (693)
Q Consensus 132 ~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 183 (693)
..+++.+++.++..+.+...+-...... ..+.+..|++.++|.+.-+..+
T Consensus 169 ~~~~F~~Ls~~ei~~~L~~Il~~EGi~i--~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 169 QHFRFKQIPQNSIISHLKTILEKEGVSY--EPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred eeEEcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHHHHH
Confidence 6889999999999999887664332222 2345678899999988555444
No 115
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.26 E-value=5e-06 Score=87.00 Aligned_cols=155 Identities=18% Similarity=0.239 Sum_probs=94.1
Q ss_pred CCCccccchhHHHHHHHHhcC----------CCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc------
Q 037483 16 LKKLVRIDSCLEELRSLMDEG----------LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV------ 79 (693)
Q Consensus 16 ~~~~vGr~~~~~~l~~~l~~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~------ 79 (693)
.+++.|+++.++++.+.+... .-..++-|.++|++|+|||++|++++++....|-. +.....
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~--v~~~~l~~~~~g 207 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIR--VVGSELVQKFIG 207 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEE--eehHHHhHhhcc
Confidence 356889999999999876431 01245679999999999999999999876543311 111110
Q ss_pred ------------CCCCCeEEEEEecCCChh------------h----hhHHhcCCCcC--CCCceEEEEeCChHHHHH--
Q 037483 80 ------------GCNTKKVLLVIDDVVDIK------------Q----LEYLVGKREWF--GSGSRIIITSRDEHLLKT-- 127 (693)
Q Consensus 80 ------------~~~~~~~LlvlDdv~~~~------------~----~~~l~~~~~~~--~~~~~iliTtR~~~~~~~-- 127 (693)
.....+.+|++||++... . +..+....... ..+..||.||........
T Consensus 208 ~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~al 287 (389)
T PRK03992 208 EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAI 287 (389)
T ss_pred chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHH
Confidence 123457899999997541 1 11222222211 235667777765432211
Q ss_pred ---cCCCceeeCCCCCHHHHHHHHHHhcccCCCCc-hHHHHHHHHHHHHhCCC
Q 037483 128 ---HGVDELCEPNGLNYDEALQLLNTKAFKTHKPL-EECAKLSERVPQYAGGL 176 (693)
Q Consensus 128 ---~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~-~~~~~~~~~i~~~~~g~ 176 (693)
...+..++++..+.++..++|..++....... .+ ...+++.+.|.
T Consensus 288 lRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 288 LRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGA 336 (389)
T ss_pred cCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCC
Confidence 12356789999999999999988764322221 12 24455556654
No 116
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=5.5e-05 Score=77.77 Aligned_cols=252 Identities=18% Similarity=0.165 Sum_probs=142.4
Q ss_pred CCCccCCCCccccchhHHHHHHHHhcC-CCCCeEEEEEEcCCCchHHHHHHHHHHHHhccccee--EEEEccc-------
Q 037483 10 PVKSETLKKLVRIDSCLEELRSLMDEG-LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGS--SFLVDEV------- 79 (693)
Q Consensus 10 ~~~~~~~~~~vGr~~~~~~l~~~l~~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~--~~~~~~~------- 79 (693)
..+...++.+.+|+++++++...|... .++.+.-+.|+|.+|+|||+.++.+++++.+..+.. +++....
T Consensus 10 l~~~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i 89 (366)
T COG1474 10 LLEDYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQV 89 (366)
T ss_pred cCCCCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHH
Confidence 445666777999999999999988763 232444599999999999999999999877664333 4443311
Q ss_pred -----------------------------CCCCCeEEEEEecCCChhh-----hhHHhcCCCcCCCCce--EEEEeCChH
Q 037483 80 -----------------------------GCNTKKVLLVIDDVVDIKQ-----LEYLVGKREWFGSGSR--IIITSRDEH 123 (693)
Q Consensus 80 -----------------------------~~~~~~~LlvlDdv~~~~~-----~~~l~~~~~~~~~~~~--iliTtR~~~ 123 (693)
...++.+++|||+++.... +-.+....... .++ +|..+-+..
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~~ 167 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDDK 167 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccHH
Confidence 1456899999999965433 22333322212 343 344444433
Q ss_pred HHH--------HcCCCceeeCCCCCHHHHHHHHHHhc---ccCCCCchHHHHHHHHHHHHhCC-CchhHHHHh--hhhcC
Q 037483 124 LLK--------THGVDELCEPNGLNYDEALQLLNTKA---FKTHKPLEECAKLSERVPQYAGG-LPLALKVLG--SFLNG 189 (693)
Q Consensus 124 ~~~--------~~~~~~~~~l~~L~~~ea~~l~~~~~---~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~~--~~l~~ 189 (693)
... ..+.. .+..++-+.+|-.+++..++ |......++..+++..++..-+| -=.||..+- +.+++
T Consensus 168 ~~~~ld~rv~s~l~~~-~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe 246 (366)
T COG1474 168 FLDYLDPRVKSSLGPS-EIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAE 246 (366)
T ss_pred HHHHhhhhhhhccCcc-eeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHH
Confidence 222 22323 36788899999999998876 33344444555555555555554 223444332 22221
Q ss_pred C------ChHHHHHHHHHhccCCCchHHHHHHHhhccCcHhhHhHHhhhhcccCCCCHHHHHHHH----HHcCC---Ccc
Q 037483 190 R------STDQWRSTLERLKRDPPNKIMSILQISFDGLQDSEKKIFLDVACFFKWKSREYVTKIL----EACGF---SPV 256 (693)
Q Consensus 190 ~------~~~~w~~~l~~l~~~~~~~~~~~l~~s~~~L~~~~~~~~~~la~f~~~~~~~~l~~~~----~~~~~---~~~ 256 (693)
+ +.+.-..+.+.. -.....-....|+.++|..+..++....+...+.+-... ...+. ...
T Consensus 247 ~~~~~~v~~~~v~~a~~~~-------~~~~~~~~~~~L~~~~ki~L~~i~~~~~~~~~~~~y~~y~~~~~~~~~~~~~~~ 319 (366)
T COG1474 247 REGSRKVSEDHVREAQEEI-------ERDVLEEVLKTLPLHQKIVLLAIVELTVEISTGELYDVYESLCERLRTSQRRFS 319 (366)
T ss_pred hhCCCCcCHHHHHHHHHHh-------hHHHHHHHHHcCCHhHHHHHHHHHHhcCCCChHHHHHHHHHHHhhhCchHHHHH
Confidence 0 111222221111 112334447888988888777666553444444443332 22222 111
Q ss_pred chhhhhhcCCcEEEe
Q 037483 257 IGIEVLIEKSLLIVD 271 (693)
Q Consensus 257 ~~l~~L~~~sLi~~~ 271 (693)
..+.+|...+++...
T Consensus 320 ~ii~~L~~lgiv~~~ 334 (366)
T COG1474 320 DIISELEGLGIVSAS 334 (366)
T ss_pred HHHHHHHhcCeEEee
Confidence 335666666766644
No 117
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.25 E-value=6.8e-05 Score=81.65 Aligned_cols=165 Identities=14% Similarity=0.120 Sum_probs=110.0
Q ss_pred cCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhc----------------------ccce
Q 037483 14 ETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISH----------------------EFEG 71 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~----------------------~f~~ 71 (693)
..-.+++|-+..++.|...+..+. -.+.+.++|+.|+||||+|+.+++.+-. +++
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~~~--i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~d- 89 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIESNK--IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLD- 89 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCC-
Confidence 344689999999999999998642 3578999999999999999999986531 122
Q ss_pred eEEEEcc--c---------------CCCCCeEEEEEecCCChh--hhhHHhcCCCcCCCCceEEEEeCC-hHHHHH-cCC
Q 037483 72 SSFLVDE--V---------------GCNTKKVLLVIDDVVDIK--QLEYLVGKREWFGSGSRIIITSRD-EHLLKT-HGV 130 (693)
Q Consensus 72 ~~~~~~~--~---------------~~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTtR~-~~~~~~-~~~ 130 (693)
..++... . ...+++-++|+|+++... ..+.+...+....+.+.+|++|.+ ..+... ...
T Consensus 90 v~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SR 169 (563)
T PRK06647 90 VIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSR 169 (563)
T ss_pred eEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHh
Confidence 2222211 1 134566789999997654 366677666655566666666544 333322 233
Q ss_pred CceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHH
Q 037483 131 DELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVL 183 (693)
Q Consensus 131 ~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 183 (693)
...+++.+++.++..+.+...+....... ..+.+..|++.++|.+..+..+
T Consensus 170 c~~~~f~~l~~~el~~~L~~i~~~egi~i--d~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 170 CQHFNFRLLSLEKIYNMLKKVCLEDQIKY--EDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred ceEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 45789999999999988887764333221 2344667888899988544433
No 118
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=5.5e-05 Score=83.36 Aligned_cols=163 Identities=18% Similarity=0.147 Sum_probs=107.9
Q ss_pred cCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHh-----------------------cccc
Q 037483 14 ETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLIS-----------------------HEFE 70 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~-----------------------~~f~ 70 (693)
..-++++|.+...+.|...+..+. -.+.+.++|+.|+||||+|+.++..+- .+|+
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~~--l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATNK--LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC--CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 444689999999999999987632 357799999999999999999988653 1233
Q ss_pred eeEEEEcc--c---------------CCCCCeEEEEEecCCChh--hhhHHhcCCCcCCCCceEEEEe-CChHHHHH-cC
Q 037483 71 GSSFLVDE--V---------------GCNTKKVLLVIDDVVDIK--QLEYLVGKREWFGSGSRIIITS-RDEHLLKT-HG 129 (693)
Q Consensus 71 ~~~~~~~~--~---------------~~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTt-R~~~~~~~-~~ 129 (693)
... +... . ...+++-++|+|+++... ..+.|...+......+.+|++| +...+... ..
T Consensus 92 ~~~-ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~S 170 (614)
T PRK14971 92 IHE-LDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILS 170 (614)
T ss_pred eEE-ecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHh
Confidence 221 2111 0 133456688999997653 3666666655445566665544 44444433 23
Q ss_pred CCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHH
Q 037483 130 VDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALK 181 (693)
Q Consensus 130 ~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 181 (693)
....+++.++++++...++...+-...... ..+.+..|++.++|...-+.
T Consensus 171 Rc~iv~f~~ls~~ei~~~L~~ia~~egi~i--~~~al~~La~~s~gdlr~al 220 (614)
T PRK14971 171 RCQIFDFNRIQVADIVNHLQYVASKEGITA--EPEALNVIAQKADGGMRDAL 220 (614)
T ss_pred hhheeecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 356899999999999999987663332221 22346778888998775443
No 119
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.24 E-value=7.6e-06 Score=83.94 Aligned_cols=133 Identities=16% Similarity=0.241 Sum_probs=85.7
Q ss_pred ccCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEcc----------c---
Q 037483 13 SETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDE----------V--- 79 (693)
Q Consensus 13 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~----------~--- 79 (693)
|....+++|.++..+.+.+++..+. -..++.++|++|+|||++|+++++.....+- .+... .
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~~--~~~~lll~G~~G~GKT~la~~l~~~~~~~~~---~i~~~~~~~~~i~~~l~~~ 91 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKGR--IPNMLLHSPSPGTGKTTVAKALCNEVGAEVL---FVNGSDCRIDFVRNRLTRF 91 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCC--CCeEEEeeCcCCCCHHHHHHHHHHHhCccce---EeccCcccHHHHHHHHHHH
Confidence 4455789999999999999987532 3578888999999999999999987643221 11110 0
Q ss_pred ----CCCCCeEEEEEecCCCh---hhhhHHhcCCCcCCCCceEEEEeCChH-HHHH-cCCCceeeCCCCCHHHHHHHHHH
Q 037483 80 ----GCNTKKVLLVIDDVVDI---KQLEYLVGKREWFGSGSRIIITSRDEH-LLKT-HGVDELCEPNGLNYDEALQLLNT 150 (693)
Q Consensus 80 ----~~~~~~~LlvlDdv~~~---~~~~~l~~~~~~~~~~~~iliTtR~~~-~~~~-~~~~~~~~l~~L~~~ea~~l~~~ 150 (693)
...+.+-++|+||++.. +..+.+...+.....++++|+||.... +... ......+.++..+.++..+++..
T Consensus 92 ~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 92 ASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred HHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHH
Confidence 12235668999999755 222333333333456788888887543 1111 12234677777888887776654
No 120
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=1.6e-08 Score=95.41 Aligned_cols=182 Identities=20% Similarity=0.197 Sum_probs=104.0
Q ss_pred CCcEEEcCCCCCcc-cchhhhcCccccceeccCCcCce-eecCCcCCCCCCCEEecCCCCCCccCCCCCCCCcccccccc
Q 037483 339 CLRTLELSGCSKLK-RFLEIVASMEDLSELYLDGTFIT-KLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLENVSE 416 (693)
Q Consensus 339 ~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~L~~~~l~-~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~lp~ 416 (693)
.|++|||++..+.. .....++.+.+|+.|.|.++.+. .+...+.+-.+|+.|+|+.|+-..... +.-
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~-----------~~l 254 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENA-----------LQL 254 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhH-----------HHH
Confidence 46667777644332 23344566777777777777766 344445666777777777764332211 111
Q ss_pred cccCCCCccEEecCCCccccC--CCcccc-CCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcC
Q 037483 417 TLGQVEILEELDISGTTIREP--PSSIFA-IKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSL 493 (693)
Q Consensus 417 ~l~~l~~L~~L~l~~n~i~~l--p~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 493 (693)
.+.+++.|..|+++.|.+..- ...+.+ -.+|+.|+++||...-.. . .+.--...+++|
T Consensus 255 l~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~-------------s------h~~tL~~rcp~l 315 (419)
T KOG2120|consen 255 LLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQK-------------S------HLSTLVRRCPNL 315 (419)
T ss_pred HHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhh-------------h------HHHHHHHhCCce
Confidence 245566677777777755421 111111 256777788776422110 0 000123567888
Q ss_pred CeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCc--ccCccccCCCCCCEEeccccc
Q 037483 494 SKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFV--TLPASISGLLNLKELELEDCA 550 (693)
Q Consensus 494 ~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~n~ 550 (693)
.+||||+|.-.....-..|.+++.|++|.++.|..- ..--.+...|+|.+|++.+|-
T Consensus 316 ~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 316 VHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 888888875323334455667888888888887432 111145677888888888764
No 121
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.23 E-value=1.5e-06 Score=81.56 Aligned_cols=51 Identities=31% Similarity=0.510 Sum_probs=37.0
Q ss_pred CccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 18 KLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 18 ~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
.||||+++++++...+.....+..+.+.|+|.+|+|||+|++++++++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 489999999999999964444468999999999999999999999988777
No 122
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.22 E-value=2.1e-05 Score=77.86 Aligned_cols=137 Identities=15% Similarity=0.152 Sum_probs=80.9
Q ss_pred CCccccchhHHHHHHHHhcC------------CCCCeEEEEEEcCCCchHHHHHHHHHHHHhccc--ceeEEEEcc----
Q 037483 17 KKLVRIDSCLEELRSLMDEG------------LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEF--EGSSFLVDE---- 78 (693)
Q Consensus 17 ~~~vGr~~~~~~l~~~l~~~------------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~---- 78 (693)
..++|.++..++|.+..... ..+...-+.++|++|+||||+|+.+++.+...- ....++...
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l 85 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADL 85 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHh
Confidence 45889888887776543221 122456789999999999999999988653211 111122110
Q ss_pred ----cC----------CCCCeEEEEEecCCCh----------hhhhHHhcCCCcCCCCceEEEEeCChHHHH------H-
Q 037483 79 ----VG----------CNTKKVLLVIDDVVDI----------KQLEYLVGKREWFGSGSRIIITSRDEHLLK------T- 127 (693)
Q Consensus 79 ----~~----------~~~~~~LlvlDdv~~~----------~~~~~l~~~~~~~~~~~~iliTtR~~~~~~------~- 127 (693)
.+ .....-+|++|+++.. +.++.+............+++++....... .
T Consensus 86 ~~~~~g~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L 165 (261)
T TIGR02881 86 VGEYIGHTAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGL 165 (261)
T ss_pred hhhhccchHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHH
Confidence 00 0112348899999752 234555554443333445556654432211 0
Q ss_pred -cCCCceeeCCCCCHHHHHHHHHHhcc
Q 037483 128 -HGVDELCEPNGLNYDEALQLLNTKAF 153 (693)
Q Consensus 128 -~~~~~~~~l~~L~~~ea~~l~~~~~~ 153 (693)
-.....++++.++.+|-.+++.+.+.
T Consensus 166 ~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 166 RSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred HhccceEEEECCCCHHHHHHHHHHHHH
Confidence 01235688999999999999987764
No 123
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=0.00011 Score=81.09 Aligned_cols=166 Identities=15% Similarity=0.082 Sum_probs=106.7
Q ss_pred cCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccc-----------------------c
Q 037483 14 ETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEF-----------------------E 70 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-----------------------~ 70 (693)
..-.+++|.+...+.|..++..+. -.+.+.++|+.|+||||+|+.+++.+-... .
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~r--l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~ 90 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNR--IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNAL 90 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCC--CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCc
Confidence 444689999999999999998643 246789999999999999999998653210 1
Q ss_pred eeEEEEccc-----------------CCCCCeEEEEEecCCCh--hhhhHHhcCCCcCCCCceEEEEeCC-hHHHHH-cC
Q 037483 71 GSSFLVDEV-----------------GCNTKKVLLVIDDVVDI--KQLEYLVGKREWFGSGSRIIITSRD-EHLLKT-HG 129 (693)
Q Consensus 71 ~~~~~~~~~-----------------~~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTtR~-~~~~~~-~~ 129 (693)
..+.+.... ...+++-++|+|+++.. +....|...+......+.+|++|.+ ..+... ..
T Consensus 91 D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrS 170 (620)
T PRK14948 91 DVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIIS 170 (620)
T ss_pred cEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHh
Confidence 112222211 12355678999999865 3466666655544445555555544 333322 23
Q ss_pred CCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHH
Q 037483 130 VDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVL 183 (693)
Q Consensus 130 ~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 183 (693)
....+++..++.++....+.+.+....... ..+.+..|++.++|.+..+..+
T Consensus 171 Rc~~~~f~~l~~~ei~~~L~~ia~kegi~i--s~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 171 RCQRFDFRRIPLEAMVQHLSEIAEKESIEI--EPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred heeEEEecCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 356788889999998888877663322211 1234677889999988655444
No 124
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=2e-07 Score=88.09 Aligned_cols=202 Identities=19% Similarity=0.189 Sum_probs=111.4
Q ss_pred CCCCcEEEcCCCCCcc--cchhhhcCccccceeccCCcCce---eecCCcCCCCCCCEEecCCCCCCccCCCCCCCCccc
Q 037483 337 LKCLRTLELSGCSKLK--RFLEIVASMEDLSELYLDGTFIT---KLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKL 411 (693)
Q Consensus 337 l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~L~~~~l~---~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L 411 (693)
..-+..|.+.+|.+.. .....-..++++++|+|.+|.|+ ++...+.++|.|++|+|+.|++...+
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I---------- 113 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI---------- 113 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc----------
Confidence 3344455555554322 22222344567888888888776 33344567788888888877654332
Q ss_pred ccccccccCCCCccEEecCCCccc--cCCCccccCCCCCEEEccCCCCCCCCCCcc--ccccccccCCCCchhhh-----
Q 037483 412 ENVSETLGQVEILEELDISGTTIR--EPPSSIFAIKNLKKLSFSGCSGPPSSASWH--LHFPFNLMGKSLYPVAL----- 482 (693)
Q Consensus 412 ~~lp~~l~~l~~L~~L~l~~n~i~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----- 482 (693)
.++| ..+.+|+.|-|.++.+. .....+..++.++.|.++.|.......... ....-.+..-...+...
T Consensus 114 ~~lp---~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~ 190 (418)
T KOG2982|consen 114 KSLP---LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLN 190 (418)
T ss_pred ccCc---ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHH
Confidence 1222 12345666666665443 223344555666666665553211100000 00000000000000000
Q ss_pred hhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccC--ccccCCCCCCEEecccccc
Q 037483 483 MLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLP--ASISGLLNLKELELEDCAL 551 (693)
Q Consensus 483 ~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~L~~n~~ 551 (693)
......-++++..+-+..|.+.+..--.....++.+.-|+|+.|++.+.. +.+.+++.|..|.++++++
T Consensus 191 ~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 191 KNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPL 261 (418)
T ss_pred HHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcc
Confidence 00012234788888888888765445556677888889999999988554 5778899999999999998
No 125
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.19 E-value=3e-05 Score=73.57 Aligned_cols=250 Identities=19% Similarity=0.215 Sum_probs=139.8
Q ss_pred ccCCCCccccchhHHHHHHHHhcC--CCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeE--EEEc-------ccCC
Q 037483 13 SETLKKLVRIDSCLEELRSLMDEG--LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSS--FLVD-------EVGC 81 (693)
Q Consensus 13 ~~~~~~~vGr~~~~~~l~~~l~~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~--~~~~-------~~~~ 81 (693)
|..-.+|||.+...+.|.=.+... .+...--|.++|+||.||||||.-+++.+...+.... -+.. ..++
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~gDlaaiLt~L 101 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPGDLAAILTNL 101 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChhhHHHHHhcC
Confidence 455578999998888887666542 2335677999999999999999999998755443211 0100 0124
Q ss_pred CCCeEEEEEecCCChhh-hhH-HhcCCCcC--------CCCc-----------eEEEEeCChHH----HHHcCCCceeeC
Q 037483 82 NTKKVLLVIDDVVDIKQ-LEY-LVGKREWF--------GSGS-----------RIIITSRDEHL----LKTHGVDELCEP 136 (693)
Q Consensus 82 ~~~~~LlvlDdv~~~~~-~~~-l~~~~~~~--------~~~~-----------~iliTtR~~~~----~~~~~~~~~~~l 136 (693)
+... ++.+|.++.... .++ +-+....+ ++++ -|=.|||.-.+ ...++ -+.++
T Consensus 102 e~~D-VLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFG--i~~rl 178 (332)
T COG2255 102 EEGD-VLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFG--IIQRL 178 (332)
T ss_pred CcCC-eEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcC--Ceeee
Confidence 4444 556788876532 222 11111111 3333 34468887433 33333 35677
Q ss_pred CCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHHhhhhcCCChHHHHHHHHHhccCC--C----chH
Q 037483 137 NGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVLGSFLNGRSTDQWRSTLERLKRDP--P----NKI 210 (693)
Q Consensus 137 ~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~w~~~l~~l~~~~--~----~~~ 210 (693)
+--+.+|-.+++.+.+..-. .+-..+.+.+|+++..|-|....-+-+..++ ........ . +..
T Consensus 179 efY~~~eL~~Iv~r~a~~l~--i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRD---------fa~V~~~~~I~~~ia~~a 247 (332)
T COG2255 179 EFYTVEELEEIVKRSAKILG--IEIDEEAALEIARRSRGTPRIANRLLRRVRD---------FAQVKGDGDIDRDIADKA 247 (332)
T ss_pred ecCCHHHHHHHHHHHHHHhC--CCCChHHHHHHHHhccCCcHHHHHHHHHHHH---------HHHHhcCCcccHHHHHHH
Confidence 78889999999988873222 2223345788999999999654444433321 11111110 0 112
Q ss_pred HHHHHHhhccCcHhhHhHHhhhhcccC--CCCHHHHHHHHHHcCCCccchhh-hhhcCCcEEEeCCCcE
Q 037483 211 MSILQISFDGLQDSEKKIFLDVACFFK--WKSREYVTKILEACGFSPVIGIE-VLIEKSLLIVDEDNRL 276 (693)
Q Consensus 211 ~~~l~~s~~~L~~~~~~~~~~la~f~~--~~~~~~l~~~~~~~~~~~~~~l~-~L~~~sLi~~~~~~~~ 276 (693)
...+..--..|+...++.+..+.-.+. +...+.+...+..+....++.++ -|+..++++....|+.
T Consensus 248 L~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyLiq~gfi~RTpRGR~ 316 (332)
T COG2255 248 LKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYLIQQGFIQRTPRGRI 316 (332)
T ss_pred HHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHHHHHhchhhhCCCcce
Confidence 233333345667777777766655443 33445555444322222222222 2677788777655543
No 126
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.18 E-value=3.5e-06 Score=85.97 Aligned_cols=110 Identities=25% Similarity=0.386 Sum_probs=72.5
Q ss_pred ccccccCcCccccccccCCCC-CCcEEEcCCCCCcccchhhhcCccccceeccCCc-CceeecCCcCCCCCCCEEecCCC
Q 037483 318 ALTLKGCKNLSSLLISLSSLK-CLRTLELSGCSKLKRFLEIVASMEDLSELYLDGT-FITKLPLSIELLTGLELLNLNDC 395 (693)
Q Consensus 318 ~~~l~~~~~L~~l~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~-~l~~l~~~~~~l~~L~~L~L~~~ 395 (693)
.+.+.+| +|+++| .+| +|++|.+++|..+..+|+.+. ++|++|++++| .+..+|. +|+.|+++.+
T Consensus 56 ~L~Is~c-~L~sLP----~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~~n 122 (426)
T PRK15386 56 RLYIKDC-DIESLP----VLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVRSLEIKGS 122 (426)
T ss_pred EEEeCCC-CCcccC----CCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccceEEeCCC
Confidence 3446677 677776 233 699999999988888887663 68999999998 7777775 4677777654
Q ss_pred CCCccCCCCCCCCcccccccccccCCCCccEEecCCCc-c--ccCCCccccCCCCCEEEccCCCCCC
Q 037483 396 KNLLRLPSSIDGCFKLENVSETLGQVEILEELDISGTT-I--REPPSSIFAIKNLKKLSFSGCSGPP 459 (693)
Q Consensus 396 ~~~~~lp~~~~~~~~L~~lp~~l~~l~~L~~L~l~~n~-i--~~lp~~~~~l~~L~~L~l~~~~~~~ 459 (693)
. |..+..+|.. |+.|.+.+++ . ..+|. .-.++|++|++++|....
T Consensus 123 ~-----------~~~L~~LPss------Lk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~ 170 (426)
T PRK15386 123 A-----------TDSIKNVPNG------LTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNII 170 (426)
T ss_pred C-----------CcccccCcch------Hhheecccccccccccccc--ccCCcccEEEecCCCccc
Confidence 2 2344455543 5566664332 1 11221 122689999999987553
No 127
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.17 E-value=1.7e-05 Score=84.32 Aligned_cols=147 Identities=18% Similarity=0.184 Sum_probs=93.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccc--ceeEEEEccc---------CC-----------CCCeEEEEEecCCChh-
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISHEF--EGSSFLVDEV---------GC-----------NTKKVLLVIDDVVDIK- 97 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~---------~~-----------~~~~~LlvlDdv~~~~- 97 (693)
..-+.|+|..|+|||+|++++++.+.... ..++++..+. +. -...-++|+||++...
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~ 220 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSY 220 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccccC
Confidence 35689999999999999999999765432 2334544311 00 1223489999996542
Q ss_pred --h-hhHHhcCCCc-CCCCceEEEEeCCh---------HHHHHcCCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHH
Q 037483 98 --Q-LEYLVGKREW-FGSGSRIIITSRDE---------HLLKTHGVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAK 164 (693)
Q Consensus 98 --~-~~~l~~~~~~-~~~~~~iliTtR~~---------~~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~ 164 (693)
. .+.+...++. ...+..||+|+... .+...+...-++++++++.++..+++.+.+-.......-..+
T Consensus 221 k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~e 300 (450)
T PRK14087 221 KEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEE 300 (450)
T ss_pred CHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHH
Confidence 1 2333332221 13455788886642 233344455678899999999999999887432211122345
Q ss_pred HHHHHHHHhCCCchhHHHHhhhh
Q 037483 165 LSERVPQYAGGLPLALKVLGSFL 187 (693)
Q Consensus 165 ~~~~i~~~~~g~Plal~~~~~~l 187 (693)
...-|++.+.|.|..+..+...+
T Consensus 301 vl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 301 AINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHHHHHccCCCHHHHHHHHHHH
Confidence 67789999999998887765443
No 128
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=0.00015 Score=79.36 Aligned_cols=164 Identities=13% Similarity=0.084 Sum_probs=106.2
Q ss_pred ccCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc---------------------cce
Q 037483 13 SETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHE---------------------FEG 71 (693)
Q Consensus 13 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---------------------f~~ 71 (693)
|..-.+++|.+...+.|...+..+. -.+.+.++|+.|+|||++|+.+++.+-.. ...
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~--~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~d 89 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGK--ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMD 89 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCC
Confidence 3444789999999999999998643 36778899999999999999998765210 112
Q ss_pred eEEEEcc--c---------------CCCCCeEEEEEecCCCh--hhhhHHhcCCCcCCCCceEEE-EeCChHHHHH-cCC
Q 037483 72 SSFLVDE--V---------------GCNTKKVLLVIDDVVDI--KQLEYLVGKREWFGSGSRIII-TSRDEHLLKT-HGV 130 (693)
Q Consensus 72 ~~~~~~~--~---------------~~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~ili-TtR~~~~~~~-~~~ 130 (693)
.+.+... . ...++.-++|+|+++.. .....|...+........+|+ ||....+... ...
T Consensus 90 v~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SR 169 (559)
T PRK05563 90 VIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSR 169 (559)
T ss_pred eEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhH
Confidence 2233221 0 13456778999999865 346666655554344555554 4444433322 223
Q ss_pred CceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhH
Q 037483 131 DELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLAL 180 (693)
Q Consensus 131 ~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 180 (693)
...+++.+++.++..+.+...+-...... ..+.+..|++.++|.+..+
T Consensus 170 c~~~~f~~~~~~ei~~~L~~i~~~egi~i--~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 170 CQRFDFKRISVEDIVERLKYILDKEGIEY--EDEALRLIARAAEGGMRDA 217 (559)
T ss_pred heEEecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 46788999999999998887763322222 1234667888888877543
No 129
>PF14516 AAA_35: AAA-like domain
Probab=98.16 E-value=0.00035 Score=71.57 Aligned_cols=168 Identities=13% Similarity=0.180 Sum_probs=105.6
Q ss_pred CccCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc-cceeEEEEccc-----------
Q 037483 12 KSETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHE-FEGSSFLVDEV----------- 79 (693)
Q Consensus 12 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~----------- 79 (693)
.|..++.+|.|...-+++.+.+.. ....+.|.|+-.+|||+|..++.+...+. |. .+++....
T Consensus 6 ~~~~~~~Yi~R~~~e~~~~~~i~~----~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~-~v~id~~~~~~~~~~~~~~ 80 (331)
T PF14516_consen 6 LPLDSPFYIERPPAEQECYQEIVQ----PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYR-CVYIDLQQLGSAIFSDLEQ 80 (331)
T ss_pred CCCCCCcccCchHHHHHHHHHHhc----CCCEEEEECcccCCHHHHHHHHHHHHHHCCCE-EEEEEeecCCCcccCCHHH
Confidence 456678899999666677666653 24589999999999999999998877543 33 23333210
Q ss_pred ------------------------------------------CCCCCeEEEEEecCCChhh----hhHHhcCCC-cC---
Q 037483 80 ------------------------------------------GCNTKKVLLVIDDVVDIKQ----LEYLVGKRE-WF--- 109 (693)
Q Consensus 80 ------------------------------------------~~~~~~~LlvlDdv~~~~~----~~~l~~~~~-~~--- 109 (693)
....++++|++|+|+..-. .+.+...+. |.
T Consensus 81 f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~ 160 (331)
T PF14516_consen 81 FLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQR 160 (331)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhc
Confidence 0235899999999975432 112221110 00
Q ss_pred ---C-CCceEEEEeCCh--HHHHH-----cCCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCch
Q 037483 110 ---G-SGSRIIITSRDE--HLLKT-----HGVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPL 178 (693)
Q Consensus 110 ---~-~~~~iliTtR~~--~~~~~-----~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 178 (693)
. ...-.+|..... ..... ......+++++++.+|..+|...+... .. ....++|...++|+|.
T Consensus 161 ~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~~----~~~~~~l~~~tgGhP~ 234 (331)
T PF14516_consen 161 KNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--FS----QEQLEQLMDWTGGHPY 234 (331)
T ss_pred ccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--CC----HHHHHHHHHHHCCCHH
Confidence 0 111122222211 11110 123457899999999999999887522 11 1127889999999999
Q ss_pred hHHHHhhhhcCC
Q 037483 179 ALKVLGSFLNGR 190 (693)
Q Consensus 179 al~~~~~~l~~~ 190 (693)
-+..++..+...
T Consensus 235 Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 235 LVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHHc
Confidence 999999998653
No 130
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.16 E-value=1.8e-05 Score=90.59 Aligned_cols=135 Identities=16% Similarity=0.151 Sum_probs=86.0
Q ss_pred ccCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccc------ceeEEEEc--------c
Q 037483 13 SETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEF------EGSSFLVD--------E 78 (693)
Q Consensus 13 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~--------~ 78 (693)
+..-+++|||+.++.++.+.|.... ..-+.++|++|+||||+|+.+++++.... ...+|..+ .
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~r~~---~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~ 259 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILLRRR---QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGAS 259 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHhcCC---cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccc
Confidence 3445789999999999999887643 34567999999999999999999875332 12233211 0
Q ss_pred c---------------CCCCCeEEEEEecCCChh-------hhh---HHhcCCCcCCCCceEEEEeCChHHHH-------
Q 037483 79 V---------------GCNTKKVLLVIDDVVDIK-------QLE---YLVGKREWFGSGSRIIITSRDEHLLK------- 126 (693)
Q Consensus 79 ~---------------~~~~~~~LlvlDdv~~~~-------~~~---~l~~~~~~~~~~~~iliTtR~~~~~~------- 126 (693)
. ...+.++++++|+++... +.+ .+.+.+. ...-++|-||...+...
T Consensus 260 ~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~--~G~l~~IgaTT~~e~~~~~~~d~A 337 (852)
T TIGR03345 260 VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA--RGELRTIAATTWAEYKKYFEKDPA 337 (852)
T ss_pred cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh--CCCeEEEEecCHHHHhhhhhccHH
Confidence 0 123578999999996542 111 1333322 22345566665432211
Q ss_pred HcCCCceeeCCCCCHHHHHHHHHHhc
Q 037483 127 THGVDELCEPNGLNYDEALQLLNTKA 152 (693)
Q Consensus 127 ~~~~~~~~~l~~L~~~ea~~l~~~~~ 152 (693)
.....+.+.+++++.++..+++....
T Consensus 338 L~rRf~~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 338 LTRRFQVVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred HHHhCeEEEeCCCCHHHHHHHHHHHH
Confidence 11223589999999999999975443
No 131
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.15 E-value=9.4e-05 Score=74.67 Aligned_cols=159 Identities=16% Similarity=0.127 Sum_probs=106.7
Q ss_pred CCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHh---------------cccceeEEEEcc---
Q 037483 17 KKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLIS---------------HEFEGSSFLVDE--- 78 (693)
Q Consensus 17 ~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~---------------~~f~~~~~~~~~--- 78 (693)
.+++|.+...+.+.+.+..+. -.+...++|+.|+||+++|.++++.+- ..++...|+...
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r--l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR--IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 468999999999999997642 258999999999999999999988642 123444554321
Q ss_pred ----------------------c---------------CCCCCeEEEEEecCCChh--hhhHHhcCCCcCCCCceEEE-E
Q 037483 79 ----------------------V---------------GCNTKKVLLVIDDVVDIK--QLEYLVGKREWFGSGSRIII-T 118 (693)
Q Consensus 79 ----------------------~---------------~~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~ili-T 118 (693)
. ...+++-++|+|+++... ....+...+...+ .+.+|+ |
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~ 160 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIA 160 (314)
T ss_pred cccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEE
Confidence 0 134567789999997664 3555665555444 444544 4
Q ss_pred eCChHHHHHc-CCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHH
Q 037483 119 SRDEHLLKTH-GVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVL 183 (693)
Q Consensus 119 tR~~~~~~~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 183 (693)
++...+.... .....+++.++++++..+.+........ .+ .....++..++|.|.....+
T Consensus 161 ~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~--~~---~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 161 PSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI--LN---INFPELLALAQGSPGAAIAN 221 (314)
T ss_pred CChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc--ch---hHHHHHHHHcCCCHHHHHHH
Confidence 4444444332 3357899999999999999988752111 11 11356888999999665443
No 132
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.13 E-value=1.7e-05 Score=84.16 Aligned_cols=164 Identities=20% Similarity=0.150 Sum_probs=93.7
Q ss_pred CccccchhHH-HHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccc--eeEEEEccc-------CC------
Q 037483 18 KLVRIDSCLE-ELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFE--GSSFLVDEV-------GC------ 81 (693)
Q Consensus 18 ~~vGr~~~~~-~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~~~~-------~~------ 81 (693)
.++|.+.... .....+....+.....+.|+|.+|+|||+|++++++.+.++.+ .+.++.... ..
T Consensus 112 fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~ 191 (405)
T TIGR00362 112 FVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKME 191 (405)
T ss_pred cccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHH
Confidence 4567665532 2222222222222456899999999999999999998766542 244554311 00
Q ss_pred -----CCCeEEEEEecCCChhh----hhHHhcCCCcC-CCCceEEEEeCCh-H--------HHHHcCCCceeeCCCCCHH
Q 037483 82 -----NTKKVLLVIDDVVDIKQ----LEYLVGKREWF-GSGSRIIITSRDE-H--------LLKTHGVDELCEPNGLNYD 142 (693)
Q Consensus 82 -----~~~~~LlvlDdv~~~~~----~~~l~~~~~~~-~~~~~iliTtR~~-~--------~~~~~~~~~~~~l~~L~~~ 142 (693)
-...-+|||||++.... .+.+...+... ..+..+|+|+... . +...+.....+++++.+.+
T Consensus 192 ~~~~~~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~ 271 (405)
T TIGR00362 192 EFKEKYRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLE 271 (405)
T ss_pred HHHHHHHhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHH
Confidence 01123899999975321 12232222111 2455677777642 1 2222333456899999999
Q ss_pred HHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHH
Q 037483 143 EALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVL 183 (693)
Q Consensus 143 ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 183 (693)
+-.+++...+-...... ..+....|++.+.|....+.-+
T Consensus 272 ~r~~il~~~~~~~~~~l--~~e~l~~ia~~~~~~~r~l~~~ 310 (405)
T TIGR00362 272 TRLAILQKKAEEEGLEL--PDEVLEFIAKNIRSNVRELEGA 310 (405)
T ss_pred HHHHHHHHHHHHcCCCC--CHHHHHHHHHhcCCCHHHHHHH
Confidence 99999998874332221 2344666777777776654433
No 133
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.10 E-value=4.4e-05 Score=77.51 Aligned_cols=138 Identities=17% Similarity=0.159 Sum_probs=90.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhc---------------------ccceeEEEEcc-----c--------------
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISH---------------------EFEGSSFLVDE-----V-------------- 79 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~---------------------~f~~~~~~~~~-----~-------------- 79 (693)
-.+.+.++|+.|+|||++|+.+++.+-- ..+...++..+ .
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~ 100 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQ 100 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhh
Confidence 4678999999999999999999886421 13344555332 1
Q ss_pred -CCCCCeEEEEEecCCChh--hhhHHhcCCCcCCCCceEEEEeCChH-HHHH-cCCCceeeCCCCCHHHHHHHHHHhccc
Q 037483 80 -GCNTKKVLLVIDDVVDIK--QLEYLVGKREWFGSGSRIIITSRDEH-LLKT-HGVDELCEPNGLNYDEALQLLNTKAFK 154 (693)
Q Consensus 80 -~~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTtR~~~-~~~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~ 154 (693)
...+++-++|+|+++... ....+...+..-.+++.+|++|.+.. +... ......+.+.+++.+++.+++.....
T Consensus 101 ~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~- 179 (328)
T PRK05707 101 TAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALP- 179 (328)
T ss_pred ccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcc-
Confidence 123344455779998653 45666666655556777777777653 3322 23356789999999999999976531
Q ss_pred CCCCchHHHHHHHHHHHHhCCCchhHHHH
Q 037483 155 THKPLEECAKLSERVPQYAGGLPLALKVL 183 (693)
Q Consensus 155 ~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 183 (693)
... .+.+..++..++|.|+....+
T Consensus 180 -~~~----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 180 -ESD----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -cCC----hHHHHHHHHHcCCCHHHHHHH
Confidence 111 122456788999999754443
No 134
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=0.00014 Score=79.97 Aligned_cols=166 Identities=16% Similarity=0.142 Sum_probs=105.8
Q ss_pred cCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc---------------------ccee
Q 037483 14 ETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHE---------------------FEGS 72 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---------------------f~~~ 72 (693)
..-.++||.+...+.|...+..+. -.+.+.++|+.|+||||+|+.+++.+-.. +...
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~~--~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~ 90 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTGR--VAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDV 90 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCe
Confidence 344689999999999999987632 35778999999999999999998865311 1112
Q ss_pred EEEEcc--c---------------CCCCCeEEEEEecCCChh--hhhHHhcCCCcCCCCceEEE-EeCChHHHHHc-CCC
Q 037483 73 SFLVDE--V---------------GCNTKKVLLVIDDVVDIK--QLEYLVGKREWFGSGSRIII-TSRDEHLLKTH-GVD 131 (693)
Q Consensus 73 ~~~~~~--~---------------~~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~ili-TtR~~~~~~~~-~~~ 131 (693)
+.+... . ...++.-++|+|+++... ....|...+....+.+.+|+ ||....+.... ...
T Consensus 91 ~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc 170 (576)
T PRK14965 91 FEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRC 170 (576)
T ss_pred eeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhh
Confidence 222211 0 133456688999997653 35566655554455666655 44444444332 234
Q ss_pred ceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCch-hHHHH
Q 037483 132 ELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPL-ALKVL 183 (693)
Q Consensus 132 ~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 183 (693)
..+++..++.++....+...+-...... ..+....|++.++|... |+..+
T Consensus 171 ~~~~f~~l~~~~i~~~L~~i~~~egi~i--~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 171 QRFDFRRIPLQKIVDRLRYIADQEGISI--SDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred hhhhcCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 6788999999999888877653322221 22346678888888663 44443
No 135
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.08 E-value=2.4e-05 Score=84.02 Aligned_cols=163 Identities=17% Similarity=0.131 Sum_probs=95.3
Q ss_pred CccccchhH--HHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccce--eEEEEccc-------CC-----
Q 037483 18 KLVRIDSCL--EELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEG--SSFLVDEV-------GC----- 81 (693)
Q Consensus 18 ~~vGr~~~~--~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~--~~~~~~~~-------~~----- 81 (693)
.++|..... ....++.. ..+.....+.|+|.+|+|||+|++++++.+..+++. +.++.... ..
T Consensus 124 fv~g~~n~~a~~~~~~~~~-~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~ 202 (450)
T PRK00149 124 FVVGKSNRLAHAAALAVAE-NPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTM 202 (450)
T ss_pred cccCCCcHHHHHHHHHHHh-CcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcH
Confidence 355655442 22333332 222234568999999999999999999988776533 34444311 00
Q ss_pred ------CCCeEEEEEecCCChhh----hhHHhcCCCc-CCCCceEEEEeCChH---------HHHHcCCCceeeCCCCCH
Q 037483 82 ------NTKKVLLVIDDVVDIKQ----LEYLVGKREW-FGSGSRIIITSRDEH---------LLKTHGVDELCEPNGLNY 141 (693)
Q Consensus 82 ------~~~~~LlvlDdv~~~~~----~~~l~~~~~~-~~~~~~iliTtR~~~---------~~~~~~~~~~~~l~~L~~ 141 (693)
-.+.-+|||||++.... .+.+...+.. ...|..|++|+.... +...+....++++++.+.
T Consensus 203 ~~~~~~~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~ 282 (450)
T PRK00149 203 EEFKEKYRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDL 282 (450)
T ss_pred HHHHHHHhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCH
Confidence 01234899999964311 1233222111 123556777776531 233344456789999999
Q ss_pred HHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHH
Q 037483 142 DEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVL 183 (693)
Q Consensus 142 ~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 183 (693)
++-.+++...+-..... -..+....|++.+.|....+.-+
T Consensus 283 ~~r~~il~~~~~~~~~~--l~~e~l~~ia~~~~~~~R~l~~~ 322 (450)
T PRK00149 283 ETRIAILKKKAEEEGID--LPDEVLEFIAKNITSNVRELEGA 322 (450)
T ss_pred HHHHHHHHHHHHHcCCC--CCHHHHHHHHcCcCCCHHHHHHH
Confidence 99999999987432211 12344667888888877654433
No 136
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.06 E-value=2.4e-05 Score=89.06 Aligned_cols=132 Identities=17% Similarity=0.176 Sum_probs=83.6
Q ss_pred CCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccc------ceeEEEEcc--------c-
Q 037483 15 TLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEF------EGSSFLVDE--------V- 79 (693)
Q Consensus 15 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~--------~- 79 (693)
.-++++||+++++++.+.|.... ..-+.++|++|+|||++|+.+++++...- ...+|..+. .
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~~~---~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~ 256 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCRRK---KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYR 256 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhcCC---CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhcccc
Confidence 34689999999999999887642 33478999999999999999999874321 223343220 0
Q ss_pred C-------------CCCCeEEEEEecCCChh-----------hhhHHhcCCCcCCCC-ceEEEEeCChHHHH-------H
Q 037483 80 G-------------CNTKKVLLVIDDVVDIK-----------QLEYLVGKREWFGSG-SRIIITSRDEHLLK-------T 127 (693)
Q Consensus 80 ~-------------~~~~~~LlvlDdv~~~~-----------~~~~l~~~~~~~~~~-~~iliTtR~~~~~~-------~ 127 (693)
| ...++.++++|+++..- ..+.+.+.+ ..| -++|-+|..++... .
T Consensus 257 g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l---~~g~i~~IgaTt~~e~~~~~~~d~al 333 (731)
T TIGR02639 257 GDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL---SSGKLRCIGSTTYEEYKNHFEKDRAL 333 (731)
T ss_pred chHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH---hCCCeEEEEecCHHHHHHHhhhhHHH
Confidence 0 13457899999996331 122233332 223 34454444322110 0
Q ss_pred cCCCceeeCCCCCHHHHHHHHHHhc
Q 037483 128 HGVDELCEPNGLNYDEALQLLNTKA 152 (693)
Q Consensus 128 ~~~~~~~~l~~L~~~ea~~l~~~~~ 152 (693)
......++++.++.++..+++....
T Consensus 334 ~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 334 SRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHhCceEEeCCCCHHHHHHHHHHHH
Confidence 1123578999999999999998654
No 137
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.04 E-value=3.5e-05 Score=73.92 Aligned_cols=159 Identities=14% Similarity=0.168 Sum_probs=106.1
Q ss_pred ccCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHh--cccceeEEEEc---ccC-------
Q 037483 13 SETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLIS--HEFEGSSFLVD---EVG------- 80 (693)
Q Consensus 13 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~--~~f~~~~~~~~---~~~------- 80 (693)
|...++++|.+..+..|...+.. ........||++|.|||+-|+++++++- +-|+.++.-.+ +.|
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~---~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~K 108 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR---RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREK 108 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh---cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhh
Confidence 44557899999999999998876 2467889999999999999999988652 23443332111 111
Q ss_pred -----------------CCCCeEEEEEecCCChh--hhhHHhcCCCcCCCCceEEEEeCC-hHHHHHc-CCCceeeCCCC
Q 037483 81 -----------------CNTKKVLLVIDDVVDIK--QLEYLVGKREWFGSGSRIIITSRD-EHLLKTH-GVDELCEPNGL 139 (693)
Q Consensus 81 -----------------~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTtR~-~~~~~~~-~~~~~~~l~~L 139 (693)
....--.+|||+++.+. .|..+..........++.++.+.. ..+.... ....-+..++|
T Consensus 109 ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L 188 (346)
T KOG0989|consen 109 IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKL 188 (346)
T ss_pred hcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCc
Confidence 11122578999998764 488887776665666665554444 2222111 22346889999
Q ss_pred CHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCC
Q 037483 140 NYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGL 176 (693)
Q Consensus 140 ~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 176 (693)
.+++...-+...+-......+ .+..+.|++.++|-
T Consensus 189 ~d~~iv~rL~~Ia~~E~v~~d--~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 189 KDEDIVDRLEKIASKEGVDID--DDALKLIAKISDGD 223 (346)
T ss_pred chHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHcCCc
Confidence 999999999888854444332 34467788888874
No 138
>PTZ00202 tuzin; Provisional
Probab=98.03 E-value=1e-05 Score=82.07 Aligned_cols=56 Identities=16% Similarity=0.247 Sum_probs=48.2
Q ss_pred CCccCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 11 VKSETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 11 ~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
..|....+|+||+++++.|...|...+.+.+++++|+|++|+|||||++.+.....
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~ 311 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG 311 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC
Confidence 45777899999999999999999865554678999999999999999999987543
No 139
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.02 E-value=3.5e-05 Score=81.97 Aligned_cols=138 Identities=17% Similarity=0.225 Sum_probs=87.3
Q ss_pred CCCCccccchhHHHHHHHHhcC----------CCCCeEEEEEEcCCCchHHHHHHHHHHHHhccc-----ceeEEEEccc
Q 037483 15 TLKKLVRIDSCLEELRSLMDEG----------LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEF-----EGSSFLVDEV 79 (693)
Q Consensus 15 ~~~~~vGr~~~~~~l~~~l~~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-----~~~~~~~~~~ 79 (693)
.-.++.|.++.++++.+.+... .-..++-+.++|++|.|||++|+++++.+...+ ....|+....
T Consensus 180 ~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 180 TYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred CHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccc
Confidence 3466888999999998876421 011356799999999999999999999875542 1222332110
Q ss_pred -------------------------CCCCCeEEEEEecCCChh---------h-----hhHHhcCCCcCC--CCceEEEE
Q 037483 80 -------------------------GCNTKKVLLVIDDVVDIK---------Q-----LEYLVGKREWFG--SGSRIIIT 118 (693)
Q Consensus 80 -------------------------~~~~~~~LlvlDdv~~~~---------~-----~~~l~~~~~~~~--~~~~iliT 118 (693)
...++++++++|+++..- + +..+...+.... .+..||.|
T Consensus 260 ~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~A 339 (512)
T TIGR03689 260 PELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGA 339 (512)
T ss_pred hhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEec
Confidence 123478999999996431 1 123333322111 34455666
Q ss_pred eCChHHHH-----HcCCCceeeCCCCCHHHHHHHHHHhc
Q 037483 119 SRDEHLLK-----THGVDELCEPNGLNYDEALQLLNTKA 152 (693)
Q Consensus 119 tR~~~~~~-----~~~~~~~~~l~~L~~~ea~~l~~~~~ 152 (693)
|....... ....+..++++..+.++..++|..+.
T Consensus 340 TN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 340 SNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred cCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 65543221 11335668999999999999999886
No 140
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.01 E-value=4.6e-05 Score=80.99 Aligned_cols=141 Identities=18% Similarity=0.175 Sum_probs=86.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcccc--eeEEEEccc-------C------------CCCCeEEEEEecCCChh--
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISHEFE--GSSFLVDEV-------G------------CNTKKVLLVIDDVVDIK-- 97 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~~~~-------~------------~~~~~~LlvlDdv~~~~-- 97 (693)
..-+.|||.+|+|||+||+++++.+.+.++ .+.|+..+. . .....-++++||++...
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCc
Confidence 345999999999999999999998766543 344544311 0 01134589999997431
Q ss_pred -hh-hHHhcCCCc-CCCCceEEEEeC-ChH--------HHHHcCCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHH
Q 037483 98 -QL-EYLVGKREW-FGSGSRIIITSR-DEH--------LLKTHGVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKL 165 (693)
Q Consensus 98 -~~-~~l~~~~~~-~~~~~~iliTtR-~~~--------~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~ 165 (693)
.. +.+...+.. ...+..||+||. .+. +...+...-++++++.+.+.-.+++.+.+-...... ..+.
T Consensus 210 ~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l--~~ev 287 (440)
T PRK14088 210 TGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGEL--PEEV 287 (440)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCC--CHHH
Confidence 11 223222111 123557888874 332 122233445789999999999999988874322221 2345
Q ss_pred HHHHHHHhCCCchhHHHH
Q 037483 166 SERVPQYAGGLPLALKVL 183 (693)
Q Consensus 166 ~~~i~~~~~g~Plal~~~ 183 (693)
...|++.+.|.-..+.-+
T Consensus 288 ~~~Ia~~~~~~~R~L~g~ 305 (440)
T PRK14088 288 LNFVAENVDDNLRRLRGA 305 (440)
T ss_pred HHHHHhccccCHHHHHHH
Confidence 667777777766555444
No 141
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.01 E-value=7.8e-05 Score=79.02 Aligned_cols=137 Identities=20% Similarity=0.145 Sum_probs=82.3
Q ss_pred CCccccchhHH--HHHHHHhcC--CC-CCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc-----------C
Q 037483 17 KKLVRIDSCLE--ELRSLMDEG--LN-DDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV-----------G 80 (693)
Q Consensus 17 ~~~vGr~~~~~--~l~~~l~~~--~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~-----------~ 80 (693)
..++|-...+. ...++.... .+ ....-+.|+|++|+|||+|++++++.+......+.++..+. +
T Consensus 112 nFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~ 191 (445)
T PRK12422 112 NFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSG 191 (445)
T ss_pred ceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcc
Confidence 34558766643 333332211 11 12356899999999999999999998765444455555421 0
Q ss_pred -------CCCCeEEEEEecCCChhh----hhHHhcCCCc-CCCCceEEEEeCCh---------HHHHHcCCCceeeCCCC
Q 037483 81 -------CNTKKVLLVIDDVVDIKQ----LEYLVGKREW-FGSGSRIIITSRDE---------HLLKTHGVDELCEPNGL 139 (693)
Q Consensus 81 -------~~~~~~LlvlDdv~~~~~----~~~l~~~~~~-~~~~~~iliTtR~~---------~~~~~~~~~~~~~l~~L 139 (693)
.-...-++++||++.... .+.+...++. ...|..||+||... .+...+.....++++++
T Consensus 192 ~~~~f~~~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~p 271 (445)
T PRK12422 192 EMQRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPL 271 (445)
T ss_pred hHHHHHHHcccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCC
Confidence 112344889999965421 2222222111 12456788888542 22333444568899999
Q ss_pred CHHHHHHHHHHhcc
Q 037483 140 NYDEALQLLNTKAF 153 (693)
Q Consensus 140 ~~~ea~~l~~~~~~ 153 (693)
+.++..+++.+.+-
T Consensus 272 d~e~r~~iL~~k~~ 285 (445)
T PRK12422 272 TKEGLRSFLERKAE 285 (445)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988873
No 142
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.00 E-value=2.3e-06 Score=80.07 Aligned_cols=188 Identities=18% Similarity=0.206 Sum_probs=102.7
Q ss_pred CCCCcEEEcCCCCCcccc----hhhhcCccccceeccCCcCce----eec-------CCcCCCCCCCEEecCCCCCCccC
Q 037483 337 LKCLRTLELSGCSKLKRF----LEIVASMEDLSELYLDGTFIT----KLP-------LSIELLTGLELLNLNDCKNLLRL 401 (693)
Q Consensus 337 l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~L~~~~l~----~l~-------~~~~~l~~L~~L~L~~~~~~~~l 401 (693)
+..++.++||+|.+.+.- ...+.+-.+|+..+++.-... .++ +.+-+|++|+..+||+|-+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 456677788887765543 333455566777776653222 222 22455677777777777554444
Q ss_pred CCCCCCCcccccccccccCCCCccEEecCCCccccCCC--------------ccccCCCCCEEEccCCCCCCCCCCcccc
Q 037483 402 PSSIDGCFKLENVSETLGQVEILEELDISGTTIREPPS--------------SIFAIKNLKKLSFSGCSGPPSSASWHLH 467 (693)
Q Consensus 402 p~~~~~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~lp~--------------~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 467 (693)
|.. +-+.+++-+.|.+|.+++|.+..+-. -..+-+.|++.....|++...+
T Consensus 109 ~e~---------L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs------ 173 (388)
T COG5238 109 PEE---------LGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGS------ 173 (388)
T ss_pred chH---------HHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCc------
Confidence 432 12334555667777777776543310 1123455666666665543221
Q ss_pred ccccccCCCCchhhhhhcccCCCCcCCeeeCCCCCCCCCCCC----ccCCCCCCCCEEeCCCCCCcc-----cCccccCC
Q 037483 468 FPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIP----NDIGNLCSLKELYLSKNNFVT-----LPASISGL 538 (693)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p----~~l~~l~~L~~L~L~~n~l~~-----lp~~l~~l 538 (693)
.......+..-.+|+.+.+.+|.|....+. ..+..+.+|+.|||..|.|+. +...+...
T Consensus 174 ------------~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W 241 (388)
T COG5238 174 ------------KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEW 241 (388)
T ss_pred ------------HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhccc
Confidence 111111233335777777777777322111 123456778888888887762 23344556
Q ss_pred CCCCEEecccccc
Q 037483 539 LNLKELELEDCAL 551 (693)
Q Consensus 539 ~~L~~L~L~~n~~ 551 (693)
+.|+.|.+.+|-+
T Consensus 242 ~~lrEL~lnDCll 254 (388)
T COG5238 242 NLLRELRLNDCLL 254 (388)
T ss_pred chhhhccccchhh
Confidence 6677777777765
No 143
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.97 E-value=4.8e-06 Score=56.38 Aligned_cols=38 Identities=34% Similarity=0.552 Sum_probs=17.0
Q ss_pred cCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCccc
Q 037483 492 SLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTL 531 (693)
Q Consensus 492 ~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~l 531 (693)
+|++|++++|++++ +|..+++|++|++|++++|.++.+
T Consensus 2 ~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCCCCC
Confidence 34455555555432 444444555555555555544443
No 144
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.97 E-value=5.2e-05 Score=81.77 Aligned_cols=138 Identities=16% Similarity=0.198 Sum_probs=84.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhcccc--eeEEEEccc-------CCC-----------CCeEEEEEecCCChh---h
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLISHEFE--GSSFLVDEV-------GCN-----------TKKVLLVIDDVVDIK---Q 98 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~~~~-------~~~-----------~~~~LlvlDdv~~~~---~ 98 (693)
..+.|+|..|.|||.|+.++++.+...+. .+.|+.... ... ..-=+|||||++... .
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke~ 394 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKES 394 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCHH
Confidence 34899999999999999999998765432 335554421 011 112379999996442 1
Q ss_pred h-hHHhcCCCc-CCCCceEEEEeCCh---------HHHHHcCCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHH
Q 037483 99 L-EYLVGKREW-FGSGSRIIITSRDE---------HLLKTHGVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSE 167 (693)
Q Consensus 99 ~-~~l~~~~~~-~~~~~~iliTtR~~---------~~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~ 167 (693)
+ +.+...++. ...+..|||||+.. .+...+...-+++++..+.+.-.+++.+++-...... ..+.+.
T Consensus 395 tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l--~~eVi~ 472 (617)
T PRK14086 395 TQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNA--PPEVLE 472 (617)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCC--CHHHHH
Confidence 2 223322221 13466788888762 2444555667899999999999999998874332221 123455
Q ss_pred HHHHHhCCCchhHH
Q 037483 168 RVPQYAGGLPLALK 181 (693)
Q Consensus 168 ~i~~~~~g~Plal~ 181 (693)
-|++.+.+..-.|.
T Consensus 473 yLa~r~~rnvR~Le 486 (617)
T PRK14086 473 FIASRISRNIRELE 486 (617)
T ss_pred HHHHhccCCHHHHH
Confidence 56665555544333
No 145
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.95 E-value=0.00061 Score=64.43 Aligned_cols=79 Identities=20% Similarity=0.212 Sum_probs=56.7
Q ss_pred ccCCCCccccchhHHHHHHHHhc-CCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc------------
Q 037483 13 SETLKKLVRIDSCLEELRSLMDE-GLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV------------ 79 (693)
Q Consensus 13 ~~~~~~~vGr~~~~~~l~~~l~~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~------------ 79 (693)
+...++++|.|++.+.|.+-... ..+....-|.+||..|.|||++++++.+....+- ...+....
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G--LRlIev~k~~L~~l~~l~~~ 100 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG--LRLIEVSKEDLGDLPELLDL 100 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC--ceEEEECHHHhccHHHHHHH
Confidence 44457899999999998765433 1222356688999999999999999998776543 22222211
Q ss_pred -CCCCCeEEEEEecC
Q 037483 80 -GCNTKKVLLVIDDV 93 (693)
Q Consensus 80 -~~~~~~~LlvlDdv 93 (693)
...+.|++|.+||+
T Consensus 101 l~~~~~kFIlf~DDL 115 (249)
T PF05673_consen 101 LRDRPYKFILFCDDL 115 (249)
T ss_pred HhcCCCCEEEEecCC
Confidence 35678999999998
No 146
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=2.3e-07 Score=87.78 Aligned_cols=159 Identities=23% Similarity=0.195 Sum_probs=98.1
Q ss_pred ccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCc-Cceeec--CCcCCCCCCCEEecCCCCCCccCCCCCCCCc
Q 037483 333 SLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGT-FITKLP--LSIELLTGLELLNLNDCKNLLRLPSSIDGCF 409 (693)
Q Consensus 333 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~-~l~~l~--~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~ 409 (693)
.++.|.+|+.|.+.++.....+...+..-.+|+.|+|+.+ .+++.. --+.+++.|..|+|+.|......-
T Consensus 205 iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~V------- 277 (419)
T KOG2120|consen 205 ILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKV------- 277 (419)
T ss_pred HHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhh-------
Confidence 3455667777777777766666666777778888888875 455322 224677888888888886544321
Q ss_pred ccccccccccCCCCccEEecCCCc----cccCCCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhc
Q 037483 410 KLENVSETLGQVEILEELDISGTT----IREPPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLF 485 (693)
Q Consensus 410 ~L~~lp~~l~~l~~L~~L~l~~n~----i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (693)
+.+-..+ -++|+.|+++++. .+.+..-...+++|.+|||+.|...... ...
T Consensus 278 --tv~V~hi--se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~---------------------~~~ 332 (419)
T KOG2120|consen 278 --TVAVAHI--SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND---------------------CFQ 332 (419)
T ss_pred --hHHHhhh--chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch---------------------HHH
Confidence 1111111 1457777777762 1122222356788888888887544331 111
Q ss_pred ccCCCCcCCeeeCCCCCCCCCCCCc---cCCCCCCCCEEeCCCC
Q 037483 486 SLSGLCSLSKLDLSYCGLGEGAIPN---DIGNLCSLKELYLSKN 526 (693)
Q Consensus 486 ~l~~l~~L~~L~ls~n~l~~~~~p~---~l~~l~~L~~L~L~~n 526 (693)
.+.+++.|++|.++.|-. .+|. .+...|+|.+|++.++
T Consensus 333 ~~~kf~~L~~lSlsRCY~---i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 333 EFFKFNYLQHLSLSRCYD---IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HHHhcchheeeehhhhcC---CChHHeeeeccCcceEEEEeccc
Confidence 566778888888888853 2343 3566788888888776
No 147
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.00021 Score=73.47 Aligned_cols=110 Identities=20% Similarity=0.232 Sum_probs=78.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc-------------------CCCCCeEEEEEecCCChhhhh
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV-------------------GCNTKKVLLVIDDVVDIKQLE 100 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~-------------------~~~~~~~LlvlDdv~~~~~~~ 100 (693)
+...+.+.|++|+|||+||.+++. ...|+++-.+..+. .-+..--.+|+||++..-+|-
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~--~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~v 614 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIAL--SSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYV 614 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHh--hcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhccc
Confidence 577899999999999999999986 57888877776532 244566789999998765542
Q ss_pred H------------H---hcCCCcCCCCceEEEEeCChHHHHHcCC----CceeeCCCCCH-HHHHHHHHHh
Q 037483 101 Y------------L---VGKREWFGSGSRIIITSRDEHLLKTHGV----DELCEPNGLNY-DEALQLLNTK 151 (693)
Q Consensus 101 ~------------l---~~~~~~~~~~~~iliTtR~~~~~~~~~~----~~~~~l~~L~~-~ea~~l~~~~ 151 (693)
. + +...+..+..--|+-||....+...++. ...|+|+.++. ++..+.+...
T Consensus 615 pIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~ 685 (744)
T KOG0741|consen 615 PIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEEL 685 (744)
T ss_pred ccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHc
Confidence 2 2 2222323334446668888888888764 45789998877 6777776654
No 148
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.93 E-value=9.1e-05 Score=82.03 Aligned_cols=50 Identities=20% Similarity=0.260 Sum_probs=40.5
Q ss_pred ccCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 13 SETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 13 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
|..-++++|++..+..+.+.+... ....+.|+|++|+||||+|+.+++..
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~~---~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVASP---FPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhcC---CCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 444568999999999888777532 34679999999999999999998754
No 149
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.93 E-value=6.8e-05 Score=78.12 Aligned_cols=160 Identities=19% Similarity=0.195 Sum_probs=95.5
Q ss_pred cCCCCccccchhHHHHHHHHhcC----------CCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeE-------EEE
Q 037483 14 ETLKKLVRIDSCLEELRSLMDEG----------LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSS-------FLV 76 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~-------~~~ 76 (693)
..-.++.|.+...++|.+.+... .-..++-|.++|++|.|||++|+++++.....|-... |+.
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~g 221 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLG 221 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcc
Confidence 33467899999999998876421 1124678999999999999999999987644431110 000
Q ss_pred cc---------cCCCCCeEEEEEecCCChh------------h----hhHHhcCCCcC--CCCceEEEEeCChHHHHH--
Q 037483 77 DE---------VGCNTKKVLLVIDDVVDIK------------Q----LEYLVGKREWF--GSGSRIIITSRDEHLLKT-- 127 (693)
Q Consensus 77 ~~---------~~~~~~~~LlvlDdv~~~~------------~----~~~l~~~~~~~--~~~~~iliTtR~~~~~~~-- 127 (693)
.. ......+.++++|+++... . +..+...+... ..+..||.||........
T Consensus 222 e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAl 301 (398)
T PTZ00454 222 EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPAL 301 (398)
T ss_pred hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHH
Confidence 00 0134567899999986431 0 12222222211 245678888876442211
Q ss_pred ---cCCCceeeCCCCCHHHHHHHHHHhcccCCCC-chHHHHHHHHHHHHhCCCc
Q 037483 128 ---HGVDELCEPNGLNYDEALQLLNTKAFKTHKP-LEECAKLSERVPQYAGGLP 177 (693)
Q Consensus 128 ---~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~-~~~~~~~~~~i~~~~~g~P 177 (693)
...+..++++..+.++..++|..+....... .-+ ..++++.+.|.-
T Consensus 302 lR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 302 LRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred cCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCC
Confidence 1335678999999999888888765322211 112 334566666654
No 150
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.92 E-value=0.00069 Score=68.17 Aligned_cols=150 Identities=17% Similarity=0.135 Sum_probs=97.8
Q ss_pred hHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHH------------------hcccceeEEEE--cc------
Q 037483 25 CLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLI------------------SHEFEGSSFLV--DE------ 78 (693)
Q Consensus 25 ~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~------------------~~~f~~~~~~~--~~------ 78 (693)
..+.+.+.+..+. -.+.+.++|+.|+||+++|.++++.+ ....+...|+. .+
T Consensus 12 ~~~~l~~~~~~~r--l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~ 89 (319)
T PRK08769 12 AYDQTVAALDAGR--LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKL 89 (319)
T ss_pred HHHHHHHHHHcCC--cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccc
Confidence 3455666665432 36789999999999999999998743 11234455552 10
Q ss_pred ---c---------------CCCCCeEEEEEecCCChh--hhhHHhcCCCcCCCCceEEEEeCCh-HHHHHc-CCCceeeC
Q 037483 79 ---V---------------GCNTKKVLLVIDDVVDIK--QLEYLVGKREWFGSGSRIIITSRDE-HLLKTH-GVDELCEP 136 (693)
Q Consensus 79 ---~---------------~~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTtR~~-~~~~~~-~~~~~~~l 136 (693)
. ...+++-++|+|+++.+. ....++..+..-.+++.+|++|.+. .+.... .....+.+
T Consensus 90 ~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~ 169 (319)
T PRK08769 90 RTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEF 169 (319)
T ss_pred cccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeC
Confidence 0 134566789999998764 3555666666556777777777653 343332 33567899
Q ss_pred CCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHHh
Q 037483 137 NGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVLG 184 (693)
Q Consensus 137 ~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 184 (693)
.+++.+++.+.+.... .. .+.+..++..++|.|+....+.
T Consensus 170 ~~~~~~~~~~~L~~~~----~~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 170 KLPPAHEALAWLLAQG----VS----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred CCcCHHHHHHHHHHcC----CC----hHHHHHHHHHcCCCHHHHHHHh
Confidence 9999999999886532 11 1225567899999998654443
No 151
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.91 E-value=6e-05 Score=86.79 Aligned_cols=134 Identities=12% Similarity=0.094 Sum_probs=83.3
Q ss_pred cCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccc------ceeEEEEc--c------c
Q 037483 14 ETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEF------EGSSFLVD--E------V 79 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~--~------~ 79 (693)
..-+++|||+.+++++.+.|.... ..-+.++|++|+|||++|+.+++++.... ...+|..+ . .
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r~~---~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~ 251 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQRRT---KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKY 251 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhcCC---cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccch
Confidence 344689999999999999987632 34577999999999999999999875421 12222221 0 0
Q ss_pred ---------------CCCCCeEEEEEecCCChh----------hhhHHhcCCCcCCCCceEEEEeCChHHHHH-------
Q 037483 80 ---------------GCNTKKVLLVIDDVVDIK----------QLEYLVGKREWFGSGSRIIITSRDEHLLKT------- 127 (693)
Q Consensus 80 ---------------~~~~~~~LlvlDdv~~~~----------~~~~l~~~~~~~~~~~~iliTtR~~~~~~~------- 127 (693)
...+.++++++|+++... .-+-+.+.+. ...-++|-+|...+....
T Consensus 252 ~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~--~g~l~~IgaTt~~e~r~~~~~d~al 329 (857)
T PRK10865 252 RGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGATTLDEYRQYIEKDAAL 329 (857)
T ss_pred hhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhh--cCCCeEEEcCCCHHHHHHhhhcHHH
Confidence 023568999999996542 1122223221 223455555554432110
Q ss_pred cCCCceeeCCCCCHHHHHHHHHHhc
Q 037483 128 HGVDELCEPNGLNYDEALQLLNTKA 152 (693)
Q Consensus 128 ~~~~~~~~l~~L~~~ea~~l~~~~~ 152 (693)
....+.+.+...+.++..++++...
T Consensus 330 ~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 330 ERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 1122356677779999999886654
No 152
>CHL00181 cbbX CbbX; Provisional
Probab=97.90 E-value=0.00042 Score=69.14 Aligned_cols=137 Identities=18% Similarity=0.223 Sum_probs=82.1
Q ss_pred CCccccchhHHHHHHHHhc----------C--CCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc-c-ceeEEEEcc----
Q 037483 17 KKLVRIDSCLEELRSLMDE----------G--LNDDVRMIGICGMGGLGKTTLVRAVYDLISHE-F-EGSSFLVDE---- 78 (693)
Q Consensus 17 ~~~vGr~~~~~~l~~~l~~----------~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f-~~~~~~~~~---- 78 (693)
++++|.++..+++.++... + ..+....+.++|++|+|||++|+.+++..... + ...-|+...
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 3688988877766655321 0 11123458899999999999999998864321 1 111122110
Q ss_pred ----cC----------CCCCeEEEEEecCCCh-----------hhhhHHhcCCCcCCCCceEEEEeCChHHHHH------
Q 037483 79 ----VG----------CNTKKVLLVIDDVVDI-----------KQLEYLVGKREWFGSGSRIIITSRDEHLLKT------ 127 (693)
Q Consensus 79 ----~~----------~~~~~~LlvlDdv~~~-----------~~~~~l~~~~~~~~~~~~iliTtR~~~~~~~------ 127 (693)
.| .....-+|++|+++.. +..+.+...........+||+++....+...
T Consensus 103 ~~~~~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~ 182 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPG 182 (287)
T ss_pred HHHHhccchHHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHH
Confidence 01 0112358999999643 2234444444433456677777765433211
Q ss_pred --cCCCceeeCCCCCHHHHHHHHHHhcc
Q 037483 128 --HGVDELCEPNGLNYDEALQLLNTKAF 153 (693)
Q Consensus 128 --~~~~~~~~l~~L~~~ea~~l~~~~~~ 153 (693)
-.....+.+++++.+|..+++...+-
T Consensus 183 L~sR~~~~i~F~~~t~~el~~I~~~~l~ 210 (287)
T CHL00181 183 LSSRIANHVDFPDYTPEELLQIAKIMLE 210 (287)
T ss_pred HHHhCCceEEcCCcCHHHHHHHHHHHHH
Confidence 12345789999999999999988873
No 153
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.90 E-value=4.6e-05 Score=87.81 Aligned_cols=130 Identities=14% Similarity=0.146 Sum_probs=82.2
Q ss_pred CCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc-c-----ceeEEEEccc----C------
Q 037483 17 KKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHE-F-----EGSSFLVDEV----G------ 80 (693)
Q Consensus 17 ~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f-----~~~~~~~~~~----~------ 80 (693)
++++||+++++++.+.|.... ..-+.++|++|+|||++|+.+++++... - ...+|..+.. |
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~---~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge 255 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT---KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGE 255 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc---cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccH
Confidence 579999999999999997643 2346799999999999999999986532 1 1234433310 0
Q ss_pred ------------CCCCeEEEEEecCCChh---------hhhHH-hcCCCcCCCCceEEEEeCChHHHHH-------cCCC
Q 037483 81 ------------CNTKKVLLVIDDVVDIK---------QLEYL-VGKREWFGSGSRIIITSRDEHLLKT-------HGVD 131 (693)
Q Consensus 81 ------------~~~~~~LlvlDdv~~~~---------~~~~l-~~~~~~~~~~~~iliTtR~~~~~~~-------~~~~ 131 (693)
...+++++++|+++... +...+ .+.+. ...-++|.+|........ ....
T Consensus 256 ~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~--rg~l~~IgaTt~~ey~~~ie~D~aL~rRf 333 (821)
T CHL00095 256 FEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA--RGELQCIGATTLDEYRKHIEKDPALERRF 333 (821)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh--CCCcEEEEeCCHHHHHHHHhcCHHHHhcc
Confidence 23467999999995331 11122 22211 123456666665443211 1224
Q ss_pred ceeeCCCCCHHHHHHHHHHh
Q 037483 132 ELCEPNGLNYDEALQLLNTK 151 (693)
Q Consensus 132 ~~~~l~~L~~~ea~~l~~~~ 151 (693)
..+.++..+.++...+++..
T Consensus 334 ~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 334 QPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred eEEecCCCCHHHHHHHHHHH
Confidence 56788889999988887653
No 154
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.90 E-value=3e-05 Score=81.26 Aligned_cols=137 Identities=15% Similarity=0.203 Sum_probs=88.4
Q ss_pred CCCCccccchhHHHHHHHHhcC----------CCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc-----
Q 037483 15 TLKKLVRIDSCLEELRSLMDEG----------LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV----- 79 (693)
Q Consensus 15 ~~~~~vGr~~~~~~l~~~l~~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~----- 79 (693)
.-.++.|.++.++++.+.+... .-...+.|.++|++|+|||++|+++++.....|-.+ ...+.
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V--~~seL~~k~~ 258 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRV--VGSELIQKYL 258 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEE--ecchhhhhhc
Confidence 3367889999999999877421 011356789999999999999999999876554211 11110
Q ss_pred -------------CCCCCeEEEEEecCCChhh----------------hhHHhcCCCcC--CCCceEEEEeCChHHHHHc
Q 037483 80 -------------GCNTKKVLLVIDDVVDIKQ----------------LEYLVGKREWF--GSGSRIIITSRDEHLLKTH 128 (693)
Q Consensus 80 -------------~~~~~~~LlvlDdv~~~~~----------------~~~l~~~~~~~--~~~~~iliTtR~~~~~~~~ 128 (693)
.....+.+++||+++.... +..++..+..+ ..+.+||.||.........
T Consensus 259 Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpa 338 (438)
T PTZ00361 259 GDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPA 338 (438)
T ss_pred chHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHH
Confidence 1345678999999753210 11122222111 2456788888765433321
Q ss_pred -----CCCceeeCCCCCHHHHHHHHHHhcc
Q 037483 129 -----GVDELCEPNGLNYDEALQLLNTKAF 153 (693)
Q Consensus 129 -----~~~~~~~l~~L~~~ea~~l~~~~~~ 153 (693)
..+..++++..+.++..++|..++.
T Consensus 339 LlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 339 LIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred hccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 2356789999999999999998763
No 155
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.89 E-value=9.4e-06 Score=54.96 Aligned_cols=37 Identities=38% Similarity=0.554 Sum_probs=32.7
Q ss_pred CCCCEEeCCCCCCcccCccccCCCCCCEEecccccce
Q 037483 516 CSLKELYLSKNNFVTLPASISGLLNLKELELEDCALK 552 (693)
Q Consensus 516 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~ 552 (693)
++|++|++++|+|+.+|..+++|++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 5799999999999999988999999999999999874
No 156
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.86 E-value=0.0001 Score=73.54 Aligned_cols=135 Identities=15% Similarity=0.167 Sum_probs=80.4
Q ss_pred CccccchhHHHHHHHHhc----------C--CCCCeEEEEEEcCCCchHHHHHHHHHHHHhccc--ceeEEEEcc-----
Q 037483 18 KLVRIDSCLEELRSLMDE----------G--LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEF--EGSSFLVDE----- 78 (693)
Q Consensus 18 ~~vGr~~~~~~l~~~l~~----------~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~----- 78 (693)
.++|.++..+++.++... + ......-+.++|++|+|||++|+.+++.+.... ....|+...
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 588988888777664321 0 011223689999999999999999887654321 111122110
Q ss_pred ---cC----------CCCCeEEEEEecCCCh-----------hhhhHHhcCCCcCCCCceEEEEeCChHHHHHc------
Q 037483 79 ---VG----------CNTKKVLLVIDDVVDI-----------KQLEYLVGKREWFGSGSRIIITSRDEHLLKTH------ 128 (693)
Q Consensus 79 ---~~----------~~~~~~LlvlDdv~~~-----------~~~~~l~~~~~~~~~~~~iliTtR~~~~~~~~------ 128 (693)
.| .+...-+|+||+++.. +..+.+...+.....+.+||+++.........
T Consensus 103 ~~~~g~~~~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L 182 (284)
T TIGR02880 103 GQYIGHTAPKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGF 182 (284)
T ss_pred HhhcccchHHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHH
Confidence 01 0112368899999733 12344444444334566777776543221111
Q ss_pred --CCCceeeCCCCCHHHHHHHHHHhc
Q 037483 129 --GVDELCEPNGLNYDEALQLLNTKA 152 (693)
Q Consensus 129 --~~~~~~~l~~L~~~ea~~l~~~~~ 152 (693)
.....+++++++.+|..+++...+
T Consensus 183 ~sR~~~~i~fp~l~~edl~~I~~~~l 208 (284)
T TIGR02880 183 SSRVAHHVDFPDYSEAELLVIAGLML 208 (284)
T ss_pred HhhCCcEEEeCCcCHHHHHHHHHHHH
Confidence 124578999999999999988876
No 157
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.85 E-value=0.00053 Score=69.12 Aligned_cols=146 Identities=14% Similarity=0.128 Sum_probs=96.9
Q ss_pred hHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHh---------------------cccceeEEEEcc----c
Q 037483 25 CLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLIS---------------------HEFEGSSFLVDE----V 79 (693)
Q Consensus 25 ~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~---------------------~~f~~~~~~~~~----~ 79 (693)
..+.+.+.+..+. -.+...++|+.|+||+++|+++++.+- ...+...++..+ .
T Consensus 10 ~~~~l~~~~~~~r--l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I 87 (325)
T PRK06871 10 TYQQITQAFQQGL--GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDI 87 (325)
T ss_pred HHHHHHHHHHcCC--cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCC
Confidence 3455666665432 357899999999999999999987541 112333444321 1
Q ss_pred ---------------CCCCCeEEEEEecCCChh--hhhHHhcCCCcCCCCceEEEEeCCh-HHHHH-cCCCceeeCCCCC
Q 037483 80 ---------------GCNTKKVLLVIDDVVDIK--QLEYLVGKREWFGSGSRIIITSRDE-HLLKT-HGVDELCEPNGLN 140 (693)
Q Consensus 80 ---------------~~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTtR~~-~~~~~-~~~~~~~~l~~L~ 140 (693)
...+++-++|+|+++.+. ....++..+..-.+++.+|++|.+. .+... ......+.+.+++
T Consensus 88 ~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~ 167 (325)
T PRK06871 88 GVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPE 167 (325)
T ss_pred CHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCC
Confidence 144667788899998764 3666777666666777777777664 44433 2335688999999
Q ss_pred HHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchh
Q 037483 141 YDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLA 179 (693)
Q Consensus 141 ~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 179 (693)
++++.+.+..... ... ..+...++.++|.|+.
T Consensus 168 ~~~~~~~L~~~~~---~~~----~~~~~~~~l~~g~p~~ 199 (325)
T PRK06871 168 EQQALDWLQAQSS---AEI----SEILTALRINYGRPLL 199 (325)
T ss_pred HHHHHHHHHHHhc---cCh----HHHHHHHHHcCCCHHH
Confidence 9999999987641 111 1245677889999963
No 158
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.85 E-value=6.2e-07 Score=75.00 Aligned_cols=104 Identities=20% Similarity=0.234 Sum_probs=71.4
Q ss_pred ccEEecCCCccccCCCcc---ccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCeeeCCC
Q 037483 424 LEELDISGTTIREPPSSI---FAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSY 500 (693)
Q Consensus 424 L~~L~l~~n~i~~lp~~~---~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~ 500 (693)
+..++|+.|.+-.+++.. .....|+..+|++|.+...++. ....++.++.|++++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~k----------------------ft~kf~t~t~lNl~~ 86 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKK----------------------FTIKFPTATTLNLAN 86 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHH----------------------Hhhccchhhhhhcch
Confidence 455666666655554433 3334455556776655433221 123345778888888
Q ss_pred CCCCCCCCCccCCCCCCCCEEeCCCCCCcccCccccCCCCCCEEecccccc
Q 037483 501 CGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPASISGLLNLKELELEDCAL 551 (693)
Q Consensus 501 n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~ 551 (693)
|.|++ +|..+..++.|+.|+++.|.+...|..+..+.+|-.|+..+|.+
T Consensus 87 neisd--vPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 87 NEISD--VPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred hhhhh--chHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCcc
Confidence 88855 88888888888889998888888888888888888888888876
No 159
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.85 E-value=0.0012 Score=66.36 Aligned_cols=147 Identities=15% Similarity=0.117 Sum_probs=98.3
Q ss_pred hHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHh--------------------cccceeEEEEccc-----
Q 037483 25 CLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLIS--------------------HEFEGSSFLVDEV----- 79 (693)
Q Consensus 25 ~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~--------------------~~f~~~~~~~~~~----- 79 (693)
..+++.+.+..+. -.+.+.++|+.|+||+++|..+++.+- ...+...++..+.
T Consensus 11 ~~~~l~~~~~~~r--l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I 88 (319)
T PRK06090 11 VWQNWKAGLDAGR--IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSI 88 (319)
T ss_pred HHHHHHHHHHcCC--cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcC
Confidence 4456666665432 367899999999999999999987431 1234455554321
Q ss_pred ---------------CCCCCeEEEEEecCCChh--hhhHHhcCCCcCCCCceEEEEeCCh-HHHHHc-CCCceeeCCCCC
Q 037483 80 ---------------GCNTKKVLLVIDDVVDIK--QLEYLVGKREWFGSGSRIIITSRDE-HLLKTH-GVDELCEPNGLN 140 (693)
Q Consensus 80 ---------------~~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTtR~~-~~~~~~-~~~~~~~l~~L~ 140 (693)
...++.-++|+|+++... ....+...+..-.+++.+|++|.+. .+.... .....+.+.+++
T Consensus 89 ~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~ 168 (319)
T PRK06090 89 TVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPS 168 (319)
T ss_pred CHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCC
Confidence 133456688999998764 3666777666666777776666654 444333 345688999999
Q ss_pred HHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHH
Q 037483 141 YDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVL 183 (693)
Q Consensus 141 ~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 183 (693)
++++.+.+.... .. .+..+++.++|.|+....+
T Consensus 169 ~~~~~~~L~~~~----~~------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 169 TAQAMQWLKGQG----IT------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred HHHHHHHHHHcC----Cc------hHHHHHHHcCCCHHHHHHH
Confidence 999999986542 11 1345788899999866544
No 160
>CHL00176 ftsH cell division protein; Validated
Probab=97.82 E-value=0.00019 Score=79.20 Aligned_cols=157 Identities=16% Similarity=0.170 Sum_probs=93.7
Q ss_pred CCCccccchhHHHHHHHHhcCC---------CCCeEEEEEEcCCCchHHHHHHHHHHHHhccccee---EEEEcc-----
Q 037483 16 LKKLVRIDSCLEELRSLMDEGL---------NDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGS---SFLVDE----- 78 (693)
Q Consensus 16 ~~~~vGr~~~~~~l~~~l~~~~---------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~---~~~~~~----- 78 (693)
-++++|.++..+++.+.+..-. ....+-|.++|++|+|||++|++++......|-.. -|....
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~ 261 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGA 261 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhH
Confidence 3678999988888777653311 11245699999999999999999998653222110 000000
Q ss_pred --------cCCCCCeEEEEEecCCChh------------h----hhHHhcCCCc--CCCCceEEEEeCChHHHHH-----
Q 037483 79 --------VGCNTKKVLLVIDDVVDIK------------Q----LEYLVGKREW--FGSGSRIIITSRDEHLLKT----- 127 (693)
Q Consensus 79 --------~~~~~~~~LlvlDdv~~~~------------~----~~~l~~~~~~--~~~~~~iliTtR~~~~~~~----- 127 (693)
......++++++||++... . +..+...... ...+..||.||........
T Consensus 262 ~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRp 341 (638)
T CHL00176 262 ARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRP 341 (638)
T ss_pred HHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhcc
Confidence 0134578999999996431 1 2223322221 1245567777766443221
Q ss_pred cCCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCC
Q 037483 128 HGVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGG 175 (693)
Q Consensus 128 ~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g 175 (693)
...+..+.++..+.++-.++++.++-..... .......+++.+.|
T Consensus 342 GRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~---~d~~l~~lA~~t~G 386 (638)
T CHL00176 342 GRFDRQITVSLPDREGRLDILKVHARNKKLS---PDVSLELIARRTPG 386 (638)
T ss_pred ccCceEEEECCCCHHHHHHHHHHHHhhcccc---hhHHHHHHHhcCCC
Confidence 1235678888899999999998887432111 12234567777777
No 161
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.82 E-value=3e-06 Score=79.32 Aligned_cols=176 Identities=20% Similarity=0.149 Sum_probs=101.1
Q ss_pred CccccccccCCCCCCcEEEcCCCCCcccch----hhhcCccccceeccCCcCceeecCC--------------cCCCCCC
Q 037483 326 NLSSLLISLSSLKCLRTLELSGCSKLKRFL----EIVASMEDLSELYLDGTFITKLPLS--------------IELLTGL 387 (693)
Q Consensus 326 ~L~~l~~~l~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~L~~~~l~~l~~~--------------~~~l~~L 387 (693)
+|+.+...+.+||+|+..+||.|.+....| +.++.-..|++|.|++|.+..+... ..+-|.|
T Consensus 80 ~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~L 159 (388)
T COG5238 80 NLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKL 159 (388)
T ss_pred HHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCc
Confidence 456666678889999999999998766655 4467778999999999988754321 2234567
Q ss_pred CEEecCCCCCCccCCCCCCCCcccccccccccCCCCccEEecCCCccccC------CCccccCCCCCEEEccCCCCCCCC
Q 037483 388 ELLNLNDCKNLLRLPSSIDGCFKLENVSETLGQVEILEELDISGTTIREP------PSSIFAIKNLKKLSFSGCSGPPSS 461 (693)
Q Consensus 388 ~~L~L~~~~~~~~lp~~~~~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~l------p~~~~~l~~L~~L~l~~~~~~~~~ 461 (693)
++.....|++..- | .+.....+..-.+|+++.+..|.|..- ...+..+.+|+.|++..|.++...
T Consensus 160 e~vicgrNRleng-s--------~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~g 230 (388)
T COG5238 160 EVVICGRNRLENG-S--------KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEG 230 (388)
T ss_pred eEEEeccchhccC-c--------HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhh
Confidence 7776666642110 0 000111223335677777777766521 123445667777777776554331
Q ss_pred CCccccccccccCCCCchhhhhhcccCCCCcCCeeeCCCCCCCCCCCCccC-----CCCCCCCEEeCCCCCC
Q 037483 462 ASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDI-----GNLCSLKELYLSKNNF 528 (693)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l-----~~l~~L~~L~L~~n~l 528 (693)
...+...+..++.|+.|.+..|-++.......+ ...++|+.|-..+|..
T Consensus 231 ------------------S~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 231 ------------------SRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred ------------------HHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhh
Confidence 112223455556667777766665433222211 1245566666666643
No 162
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.82 E-value=0.0005 Score=70.06 Aligned_cols=148 Identities=16% Similarity=0.098 Sum_probs=98.8
Q ss_pred hhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHh---------------------cccceeEEEEccc---
Q 037483 24 SCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLIS---------------------HEFEGSSFLVDEV--- 79 (693)
Q Consensus 24 ~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~---------------------~~f~~~~~~~~~~--- 79 (693)
...+++.+.+..+. -.+...++|+.|+||+++|.++++.+- ...++..++..+.
T Consensus 9 ~~~~~l~~~~~~~r--l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~ 86 (334)
T PRK07993 9 PDYEQLVGSYQAGR--GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKS 86 (334)
T ss_pred HHHHHHHHHHHcCC--cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccc
Confidence 34566666666532 368899999999999999999987541 1234445553321
Q ss_pred -----------------CCCCCeEEEEEecCCChh--hhhHHhcCCCcCCCCceEEEEeCCh-HHHHH-cCCCceeeCCC
Q 037483 80 -----------------GCNTKKVLLVIDDVVDIK--QLEYLVGKREWFGSGSRIIITSRDE-HLLKT-HGVDELCEPNG 138 (693)
Q Consensus 80 -----------------~~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTtR~~-~~~~~-~~~~~~~~l~~ 138 (693)
...+++-++|+|+++.+. ....++..+..-.+++.+|++|.+. .+... ......+.+.+
T Consensus 87 ~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~ 166 (334)
T PRK07993 87 SLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAP 166 (334)
T ss_pred cCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCC
Confidence 145677789999998764 3566776666656777776666653 44433 23356789999
Q ss_pred CCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhH
Q 037483 139 LNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLAL 180 (693)
Q Consensus 139 L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 180 (693)
++++++.+++..... .+ .+.+..+++.++|.|...
T Consensus 167 ~~~~~~~~~L~~~~~---~~----~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 167 PPEQYALTWLSREVT---MS----QDALLAALRLSAGAPGAA 201 (334)
T ss_pred CCHHHHHHHHHHccC---CC----HHHHHHHHHHcCCCHHHH
Confidence 999999998865421 11 122567888999999643
No 163
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.00021 Score=70.21 Aligned_cols=157 Identities=18% Similarity=0.241 Sum_probs=99.4
Q ss_pred CCCccccchhHHHHHHHHhcCC----------CCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc------
Q 037483 16 LKKLVRIDSCLEELRSLMDEGL----------NDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV------ 79 (693)
Q Consensus 16 ~~~~vGr~~~~~~l~~~l~~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~------ 79 (693)
-.++=|-++++++|.+.+.-.- =+.++-|.+||+||.|||-||++++++....|-.++ ..+.
T Consensus 150 Y~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvv--gSElVqKYiG 227 (406)
T COG1222 150 YEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVV--GSELVQKYIG 227 (406)
T ss_pred hhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEec--cHHHHHHHhc
Confidence 3567789999999998774421 124778999999999999999999997655542211 1111
Q ss_pred ------------CCCCCeEEEEEecCCChhh----------------hhHHhcCCCcCC--CCceEEEEeCChHHH----
Q 037483 80 ------------GCNTKKVLLVIDDVVDIKQ----------------LEYLVGKREWFG--SGSRIIITSRDEHLL---- 125 (693)
Q Consensus 80 ------------~~~~~~~LlvlDdv~~~~~----------------~~~l~~~~~~~~--~~~~iliTtR~~~~~---- 125 (693)
.....+..|.+|.++.... .-+|+.+++.|. ...+||..|-..+++
T Consensus 228 EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPAL 307 (406)
T COG1222 228 EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPAL 307 (406)
T ss_pred cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhh
Confidence 2566789999998854311 223444555444 356788877654433
Q ss_pred -HHcCCCceeeCCCCCHHHHHHHHHHhcccCCCC-chHHHHHHHHHHHHhCCCch
Q 037483 126 -KTHGVDELCEPNGLNYDEALQLLNTKAFKTHKP-LEECAKLSERVPQYAGGLPL 178 (693)
Q Consensus 126 -~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~-~~~~~~~~~~i~~~~~g~Pl 178 (693)
..-..+..++++.-+.+.-.++|.-++-.-... .-+ .+.+++.|.|.--
T Consensus 308 LRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd----~e~la~~~~g~sG 358 (406)
T COG1222 308 LRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD----LELLARLTEGFSG 358 (406)
T ss_pred cCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC----HHHHHHhcCCCch
Confidence 222346788998777777778887776322221 112 2346666776653
No 164
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.81 E-value=0.00015 Score=74.35 Aligned_cols=138 Identities=22% Similarity=0.164 Sum_probs=88.8
Q ss_pred CCCccccchhHHH-HHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccce--eEEEEccc-------CCCC--
Q 037483 16 LKKLVRIDSCLEE-LRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEG--SSFLVDEV-------GCNT-- 83 (693)
Q Consensus 16 ~~~~vGr~~~~~~-l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~--~~~~~~~~-------~~~~-- 83 (693)
...++|-...... +...+....+.....+.|||..|.|||.|++++.+...+..+. +.++..+. ....
T Consensus 87 dnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~ 166 (408)
T COG0593 87 DNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNE 166 (408)
T ss_pred hheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhh
Confidence 3456666655543 3333333333246789999999999999999999988777763 44444322 1111
Q ss_pred --------CeEEEEEecCCChhh----hhHHhcCCCc-CCCCceEEEEeCCh---------HHHHHcCCCceeeCCCCCH
Q 037483 84 --------KKVLLVIDDVVDIKQ----LEYLVGKREW-FGSGSRIIITSRDE---------HLLKTHGVDELCEPNGLNY 141 (693)
Q Consensus 84 --------~~~LlvlDdv~~~~~----~~~l~~~~~~-~~~~~~iliTtR~~---------~~~~~~~~~~~~~l~~L~~ 141 (693)
.-=++++||++-... -+++...++. ...|..||+|++.. .+..++.+.-++++++.+.
T Consensus 167 ~~~Fk~~y~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~ 246 (408)
T COG0593 167 MEKFKEKYSLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDD 246 (408)
T ss_pred HHHHHHhhccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCH
Confidence 234899999964322 2223332221 13455899999652 3555666778899999999
Q ss_pred HHHHHHHHHhcc
Q 037483 142 DEALQLLNTKAF 153 (693)
Q Consensus 142 ~ea~~l~~~~~~ 153 (693)
+....++.+.+-
T Consensus 247 e~r~aiL~kka~ 258 (408)
T COG0593 247 ETRLAILRKKAE 258 (408)
T ss_pred HHHHHHHHHHHH
Confidence 999999988763
No 165
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.80 E-value=0.00013 Score=66.90 Aligned_cols=83 Identities=19% Similarity=0.334 Sum_probs=57.4
Q ss_pred ccCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhc-ccceeEEEE---cccC--------
Q 037483 13 SETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISH-EFEGSSFLV---DEVG-------- 80 (693)
Q Consensus 13 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~---~~~~-------- 80 (693)
|..-.++||-++.++++.-...+ ++..-+.|.||||+||||-+..+++.+-. .|...+.-. ++.|
T Consensus 23 P~~l~dIVGNe~tv~rl~via~~---gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~I 99 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAKE---GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKI 99 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHHc---CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHH
Confidence 34456899999999998876654 35677899999999999999999886422 232222111 1221
Q ss_pred ----------CCCCeEEEEEecCCChhh
Q 037483 81 ----------CNTKKVLLVIDDVVDIKQ 98 (693)
Q Consensus 81 ----------~~~~~~LlvlDdv~~~~~ 98 (693)
-.++.-.+|||.++++..
T Consensus 100 K~FAQ~kv~lp~grhKIiILDEADSMT~ 127 (333)
T KOG0991|consen 100 KMFAQKKVTLPPGRHKIIILDEADSMTA 127 (333)
T ss_pred HHHHHhhccCCCCceeEEEeeccchhhh
Confidence 346677899999988754
No 166
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.80 E-value=0.00014 Score=84.14 Aligned_cols=133 Identities=14% Similarity=0.129 Sum_probs=83.6
Q ss_pred CCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccc------ceeEEEEc--c------c-
Q 037483 15 TLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEF------EGSSFLVD--E------V- 79 (693)
Q Consensus 15 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~--~------~- 79 (693)
.-+.+|||+.++.++.+.|.... ..-+.++|++|+|||++|+.+++++...+ ...+|..+ . .
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~~---~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~ 247 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRT---KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYR 247 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcCC---CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhh
Confidence 34679999999999999987632 34567899999999999999999875432 22333321 0 0
Q ss_pred C--------------CCCCeEEEEEecCCChh----------hhhHHhcCCCcCCCCceEEEEeCChHHHH-------Hc
Q 037483 80 G--------------CNTKKVLLVIDDVVDIK----------QLEYLVGKREWFGSGSRIIITSRDEHLLK-------TH 128 (693)
Q Consensus 80 ~--------------~~~~~~LlvlDdv~~~~----------~~~~l~~~~~~~~~~~~iliTtR~~~~~~-------~~ 128 (693)
| ..+++++|++|+++... ..+.+.+.+. ...-++|.+|....... ..
T Consensus 248 g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~--~g~i~~IgaTt~~e~r~~~~~d~al~ 325 (852)
T TIGR03346 248 GEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA--RGELHCIGATTLDEYRKYIEKDAALE 325 (852)
T ss_pred hhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh--cCceEEEEeCcHHHHHHHhhcCHHHH
Confidence 0 22468999999997442 1122222221 12234555555443211 11
Q ss_pred CCCceeeCCCCCHHHHHHHHHHhc
Q 037483 129 GVDELCEPNGLNYDEALQLLNTKA 152 (693)
Q Consensus 129 ~~~~~~~l~~L~~~ea~~l~~~~~ 152 (693)
.....+.++..+.++..+++....
T Consensus 326 rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 326 RRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred hcCCEEEeCCCCHHHHHHHHHHHH
Confidence 123467899999999999887653
No 167
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.77 E-value=1.8e-06 Score=72.23 Aligned_cols=105 Identities=19% Similarity=0.291 Sum_probs=64.3
Q ss_pred cEEEcCCCCCcc--cchhhhcCccccceeccCCcCceeecCCcC-CCCCCCEEecCCCCCCccCCCCCCCCccccccccc
Q 037483 341 RTLELSGCSKLK--RFLEIVASMEDLSELYLDGTFITKLPLSIE-LLTGLELLNLNDCKNLLRLPSSIDGCFKLENVSET 417 (693)
Q Consensus 341 ~~L~l~~~~~~~--~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~-~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~lp~~ 417 (693)
..++|++|.+.. ..+..+....+|+..+|++|.+..+|+.+. .++.++.|++++| .+..+|..
T Consensus 30 h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n--------------eisdvPeE 95 (177)
T KOG4579|consen 30 HFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN--------------EISDVPEE 95 (177)
T ss_pred hhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh--------------hhhhchHH
Confidence 345566654321 222334445566666777777776666553 4456677777766 44555666
Q ss_pred ccCCCCccEEecCCCccccCCCccccCCCCCEEEccCCCCCC
Q 037483 418 LGQVEILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPP 459 (693)
Q Consensus 418 l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~ 459 (693)
+..++.|+.|+++.|.+...|.-+..+.+|-+|+..+|....
T Consensus 96 ~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~e 137 (177)
T KOG4579|consen 96 LAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAE 137 (177)
T ss_pred HhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCcccc
Confidence 667777777777777777777666667777777766665443
No 168
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.75 E-value=0.00011 Score=82.63 Aligned_cols=131 Identities=16% Similarity=0.163 Sum_probs=81.4
Q ss_pred CCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc------cceeEEEEc----ccC------
Q 037483 17 KKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHE------FEGSSFLVD----EVG------ 80 (693)
Q Consensus 17 ~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~~----~~~------ 80 (693)
+.++||+++++++.+.|.... ..-+.++|++|+|||++|+.+++++... .....|... ..|
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~---~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge 262 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR---KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGD 262 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC---CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhh
Confidence 579999999999999888642 2345789999999999999999875332 122333221 000
Q ss_pred ------------CCCCeEEEEEecCCCh--------hh--hhH-HhcCCCcCCCCceEEEEeCChHHHH-------HcCC
Q 037483 81 ------------CNTKKVLLVIDDVVDI--------KQ--LEY-LVGKREWFGSGSRIIITSRDEHLLK-------THGV 130 (693)
Q Consensus 81 ------------~~~~~~LlvlDdv~~~--------~~--~~~-l~~~~~~~~~~~~iliTtR~~~~~~-------~~~~ 130 (693)
....+.+|++|+++.. .+ ... +.+.+. ...-++|-+|...+... ....
T Consensus 263 ~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIgATt~~E~~~~~~~D~AL~rR 340 (758)
T PRK11034 263 FEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEFSNIFEKDRALARR 340 (758)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEecCChHHHHHHhhccHHHHhh
Confidence 1235679999999643 11 111 222221 12344555554433211 0112
Q ss_pred CceeeCCCCCHHHHHHHHHHhc
Q 037483 131 DELCEPNGLNYDEALQLLNTKA 152 (693)
Q Consensus 131 ~~~~~l~~L~~~ea~~l~~~~~ 152 (693)
.+.+.++..+.+++.+++....
T Consensus 341 Fq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 341 FQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred CcEEEeCCCCHHHHHHHHHHHH
Confidence 3578999999999999998654
No 169
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.73 E-value=0.00054 Score=70.09 Aligned_cols=132 Identities=16% Similarity=0.168 Sum_probs=89.4
Q ss_pred Cccc-cchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHh-cc--------------------cceeEEE
Q 037483 18 KLVR-IDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLIS-HE--------------------FEGSSFL 75 (693)
Q Consensus 18 ~~vG-r~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~-~~--------------------f~~~~~~ 75 (693)
.++| -+..++.+...+..+. -.+...++|+.|+|||++|+.+++.+- .. ++...++
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~--l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i 83 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR--LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLV 83 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC--CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEe
Confidence 4567 6667778888876532 367889999999999999999988642 11 3333343
Q ss_pred Eccc------------------CCCCCeEEEEEecCCChh--hhhHHhcCCCcCCCCceEEEEeCChH-HHHH-cCCCce
Q 037483 76 VDEV------------------GCNTKKVLLVIDDVVDIK--QLEYLVGKREWFGSGSRIIITSRDEH-LLKT-HGVDEL 133 (693)
Q Consensus 76 ~~~~------------------~~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTtR~~~-~~~~-~~~~~~ 133 (693)
..+. ...+.+-++|+|+++... ....+...+....+++.+|++|.+.. +... ......
T Consensus 84 ~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~ 163 (329)
T PRK08058 84 APDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQV 163 (329)
T ss_pred ccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhcee
Confidence 2211 134556679999997654 35667666665567777777776643 3322 233568
Q ss_pred eeCCCCCHHHHHHHHHHh
Q 037483 134 CEPNGLNYDEALQLLNTK 151 (693)
Q Consensus 134 ~~l~~L~~~ea~~l~~~~ 151 (693)
+++.+++.++..+.+...
T Consensus 164 i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 164 VEFRPLPPESLIQRLQEE 181 (329)
T ss_pred eeCCCCCHHHHHHHHHHc
Confidence 899999999998888654
No 170
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.67 E-value=0.00016 Score=78.65 Aligned_cols=165 Identities=20% Similarity=0.209 Sum_probs=93.6
Q ss_pred CCCccccchhHHHHHHHHhcC---------CCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeE-------EEEcc-
Q 037483 16 LKKLVRIDSCLEELRSLMDEG---------LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSS-------FLVDE- 78 (693)
Q Consensus 16 ~~~~vGr~~~~~~l~~~l~~~---------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~-------~~~~~- 78 (693)
-++++|.++..+++.+++..- ....++-+.++|++|+|||++|++++......|-... |....
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~ 133 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGA 133 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccH
Confidence 357889988887777655420 1123456999999999999999999986533221100 00000
Q ss_pred --------cCCCCCeEEEEEecCCChhh----------------hhHHhcCCCcC--CCCceEEEEeCChHH-----HHH
Q 037483 79 --------VGCNTKKVLLVIDDVVDIKQ----------------LEYLVGKREWF--GSGSRIIITSRDEHL-----LKT 127 (693)
Q Consensus 79 --------~~~~~~~~LlvlDdv~~~~~----------------~~~l~~~~~~~--~~~~~iliTtR~~~~-----~~~ 127 (693)
......+.+|++|+++.... +..+....... ..+..||.||..... ...
T Consensus 134 ~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~ 213 (495)
T TIGR01241 134 SRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRP 213 (495)
T ss_pred HHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcC
Confidence 01234568999999954310 11222222211 234556666665432 211
Q ss_pred cCCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCc-hhHHHH
Q 037483 128 HGVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLP-LALKVL 183 (693)
Q Consensus 128 ~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~ 183 (693)
...+..+.++..+.++-.+++..+.-......+ .....+++.+.|.- -.|..+
T Consensus 214 gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~---~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 214 GRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD---VDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred CcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc---hhHHHHHHhCCCCCHHHHHHH
Confidence 134567899999999999999887633222111 11346777777743 334433
No 171
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=1e-05 Score=76.89 Aligned_cols=196 Identities=19% Similarity=0.154 Sum_probs=110.6
Q ss_pred CCCCCcEEEcCCCCCcc--cchhhhcCccccceeccCCcCceeecCCc-CCCCCCCEEecCCCCCCccCCCCCCCCcccc
Q 037483 336 SLKCLRTLELSGCSKLK--RFLEIVASMEDLSELYLDGTFITKLPLSI-ELLTGLELLNLNDCKNLLRLPSSIDGCFKLE 412 (693)
Q Consensus 336 ~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~L~~~~l~~l~~~~-~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~ 412 (693)
.++.++.|||.+|.+.. .+...+.++|.|++|+|+.|.+...-.+. ..+.+|++|-|++..+.- .
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w------------~ 136 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSW------------T 136 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCCh------------h
Confidence 45678888888876543 34556778888888888888776432223 345688888887753321 1
Q ss_pred cccccccCCCCccEEecCCCccccC---CCcccc-CCCCCEEEccCC---------CCCCCCCCccccccccccCCCCch
Q 037483 413 NVSETLGQVEILEELDISGTTIREP---PSSIFA-IKNLKKLSFSGC---------SGPPSSASWHLHFPFNLMGKSLYP 479 (693)
Q Consensus 413 ~lp~~l~~l~~L~~L~l~~n~i~~l---p~~~~~-l~~L~~L~l~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 479 (693)
.....+..+|.+++|.++.|++..+ ...+.. -+.+++|.+..| ++....|.....+.-.-|-+.
T Consensus 137 ~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~--- 213 (418)
T KOG2982|consen 137 QSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKT--- 213 (418)
T ss_pred hhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccc---
Confidence 2223345667777777777755432 011111 113333333333 222221111000000000000
Q ss_pred hhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCc-ccC------ccccCCCCCCEEecc
Q 037483 480 VALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFV-TLP------ASISGLLNLKELELE 547 (693)
Q Consensus 480 ~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~-~lp------~~l~~l~~L~~L~L~ 547 (693)
......+..++.+..|+|+.|+|.+..--+.+..+++|..|.+++|.+. .+- --++.+++++.|+=+
T Consensus 214 -~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 214 -ESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred -hhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 0011145667788899999999955444567889999999999999876 221 124677787777644
No 172
>PRK10536 hypothetical protein; Provisional
Probab=97.61 E-value=0.00029 Score=67.48 Aligned_cols=53 Identities=13% Similarity=0.158 Sum_probs=40.5
Q ss_pred CCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHH-H-hcccceeEE
Q 037483 17 KKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDL-I-SHEFEGSSF 74 (693)
Q Consensus 17 ~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~-~-~~~f~~~~~ 74 (693)
..+.+|......+..++.. ..+|.+.|++|.|||+||.+++.+ + ..+|...+.
T Consensus 55 ~~i~p~n~~Q~~~l~al~~-----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES-----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred ccccCCCHHHHHHHHHHhc-----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 5677888888888888864 248999999999999999998874 3 344544333
No 173
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.60 E-value=1.2e-05 Score=89.28 Aligned_cols=57 Identities=16% Similarity=0.267 Sum_probs=23.3
Q ss_pred CCcEEEcCCCCCcc-cchhh-hcCccccceeccCCcCce--eecCCcCCCCCCCEEecCCC
Q 037483 339 CLRTLELSGCSKLK-RFLEI-VASMEDLSELYLDGTFIT--KLPLSIELLTGLELLNLNDC 395 (693)
Q Consensus 339 ~L~~L~l~~~~~~~-~~~~~-~~~l~~L~~L~L~~~~l~--~l~~~~~~l~~L~~L~L~~~ 395 (693)
+|++|++++..... ..|.. -..+|+|+.|.+.+-.+. ++..-..++++|..||+|++
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T 183 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT 183 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC
Confidence 45555555533221 12222 223455555555543332 11122234445555555543
No 174
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.59 E-value=0.0002 Score=62.69 Aligned_cols=23 Identities=43% Similarity=0.561 Sum_probs=21.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHHh
Q 037483 44 IGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 44 v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
|.|+|++|+|||++|+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 67999999999999999999874
No 175
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.58 E-value=8e-05 Score=65.21 Aligned_cols=80 Identities=26% Similarity=0.390 Sum_probs=49.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcc-----cceeEEEEccc---------------C-------------------
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISHE-----FEGSSFLVDEV---------------G------------------- 80 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f~~~~~~~~~~---------------~------------------- 80 (693)
+.+.+.|+|.+|+|||+++.++++..... -...+|+.... +
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 45789999999999999999999876543 23444554411 0
Q ss_pred -CCCCeEEEEEecCCCh-h--hhhHHhcCCCcCCCCceEEEEeCC
Q 037483 81 -CNTKKVLLVIDDVVDI-K--QLEYLVGKREWFGSGSRIIITSRD 121 (693)
Q Consensus 81 -~~~~~~LlvlDdv~~~-~--~~~~l~~~~~~~~~~~~iliTtR~ 121 (693)
.+.+..++|+|+++.. . .++.+....+ ..+.++|+..++
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 1223479999999776 3 2344433323 567778887765
No 176
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.58 E-value=0.0057 Score=62.72 Aligned_cols=101 Identities=15% Similarity=0.101 Sum_probs=65.8
Q ss_pred CeEEEEEecCCChh-----------hhhHHhcCCCcCCCCceEEEEeCChH----HHHHc--CCCceeeCCCCCHHHHHH
Q 037483 84 KKVLLVIDDVVDIK-----------QLEYLVGKREWFGSGSRIIITSRDEH----LLKTH--GVDELCEPNGLNYDEALQ 146 (693)
Q Consensus 84 ~~~LlvlDdv~~~~-----------~~~~l~~~~~~~~~~~~iliTtR~~~----~~~~~--~~~~~~~l~~L~~~ea~~ 146 (693)
++-++|+||+.... +|...+.. ..-.+||++|-+.. +...+ .+.+.+.+.-.+.+.|.+
T Consensus 148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~ 223 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQ 223 (431)
T ss_pred cCCEEEEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHH
Confidence 47899999984321 23333322 35678888887743 33333 235678899999999999
Q ss_pred HHHHhcccCCCC------------------chHHHHHHHHHHHHhCCCchhHHHHhhhhc
Q 037483 147 LLNTKAFKTHKP------------------LEECAKLSERVPQYAGGLPLALKVLGSFLN 188 (693)
Q Consensus 147 l~~~~~~~~~~~------------------~~~~~~~~~~i~~~~~g~Plal~~~~~~l~ 188 (693)
+...+....... ...........++.+||==.-+..+++.++
T Consensus 224 yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRik 283 (431)
T PF10443_consen 224 YVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIK 283 (431)
T ss_pred HHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 998887432110 012334455677788888888888888876
No 177
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.55 E-value=0.0052 Score=62.52 Aligned_cols=134 Identities=16% Similarity=0.160 Sum_probs=87.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhc----------------------ccceeEEEEcc-------------------
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISH----------------------EFEGSSFLVDE------------------- 78 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~----------------------~f~~~~~~~~~------------------- 78 (693)
-.+.+.++|+.|+||+++|+.+++.+-- ..+...++..+
T Consensus 20 l~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~~ 99 (342)
T PRK06964 20 LPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADAD 99 (342)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchhh
Confidence 4678999999999999999999875421 12233333211
Q ss_pred ------------c---------------CCCCCeEEEEEecCCChh--hhhHHhcCCCcCCCCceEEEEeCC-hHHHHH-
Q 037483 79 ------------V---------------GCNTKKVLLVIDDVVDIK--QLEYLVGKREWFGSGSRIIITSRD-EHLLKT- 127 (693)
Q Consensus 79 ------------~---------------~~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTtR~-~~~~~~- 127 (693)
. ...++.-++|+|+++.+. ....|+..+..-.+++.+|++|.+ ..+...
T Consensus 100 ~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI 179 (342)
T PRK06964 100 EGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTI 179 (342)
T ss_pred cccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHH
Confidence 0 133456688899997654 466677766666677766655555 444433
Q ss_pred cCCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHH
Q 037483 128 HGVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVL 183 (693)
Q Consensus 128 ~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 183 (693)
......+.+.+++.++..+.+.... .+ + ...++..++|.|.....+
T Consensus 180 ~SRcq~i~~~~~~~~~~~~~L~~~~----~~-~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 180 LSRCRQFPMTVPAPEAAAAWLAAQG----VA-D-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred HhcCEEEEecCCCHHHHHHHHHHcC----CC-h-----HHHHHHHcCCCHHHHHHH
Confidence 2335688999999999999987652 11 1 123567789999654433
No 178
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.54 E-value=0.00037 Score=74.43 Aligned_cols=161 Identities=13% Similarity=0.092 Sum_probs=90.4
Q ss_pred CCCccccchhHHHHHHHHhc---C----CCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeE---EEEcccC-----
Q 037483 16 LKKLVRIDSCLEELRSLMDE---G----LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSS---FLVDEVG----- 80 (693)
Q Consensus 16 ~~~~vGr~~~~~~l~~~l~~---~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~---~~~~~~~----- 80 (693)
-.++.|.+...+.+.+.... . .-..++-|.++|++|.|||.+|++++......|-..- +.....|
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~ 306 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESR 306 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHH
Confidence 35678887766666543211 0 1124677999999999999999999987643321100 0000011
Q ss_pred --------CCCCeEEEEEecCCChhh--------------hhHHhcCCCcCCCCceEEEEeCChH-----HHHHcCCCce
Q 037483 81 --------CNTKKVLLVIDDVVDIKQ--------------LEYLVGKREWFGSGSRIIITSRDEH-----LLKTHGVDEL 133 (693)
Q Consensus 81 --------~~~~~~LlvlDdv~~~~~--------------~~~l~~~~~~~~~~~~iliTtR~~~-----~~~~~~~~~~ 133 (693)
....++++++|+++..-. ...+...+.....+..||.||.... +......+..
T Consensus 307 l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~ 386 (489)
T CHL00195 307 MRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEI 386 (489)
T ss_pred HHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeE
Confidence 235789999999964211 1112211111233445666776543 2221234677
Q ss_pred eeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCc
Q 037483 134 CEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLP 177 (693)
Q Consensus 134 ~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 177 (693)
+.++.-+.++-.++|..+..+....... ......+++.+.|.-
T Consensus 387 i~v~lP~~~eR~~Il~~~l~~~~~~~~~-~~dl~~La~~T~GfS 429 (489)
T CHL00195 387 FFLDLPSLEEREKIFKIHLQKFRPKSWK-KYDIKKLSKLSNKFS 429 (489)
T ss_pred EEeCCcCHHHHHHHHHHHHhhcCCCccc-ccCHHHHHhhcCCCC
Confidence 8899899999999998887432211100 111345666666654
No 179
>PRK08181 transposase; Validated
Probab=97.53 E-value=0.00012 Score=71.91 Aligned_cols=81 Identities=20% Similarity=0.069 Sum_probs=48.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc-----------C-------CCCCeEEEEEecCCCh----hhh
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV-----------G-------CNTKKVLLVIDDVVDI----KQL 99 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~-----------~-------~~~~~~LlvlDdv~~~----~~~ 99 (693)
.-+.++|++|+|||.||.++++....+...+.|+.... + .-.+.=||||||+... ...
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~~~~~~ 186 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTKDQAET 186 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccccCCHHHH
Confidence 45999999999999999999987665544455555411 0 0123458999999432 111
Q ss_pred hHHhcCCCcCCCCceEEEEeCCh
Q 037483 100 EYLVGKREWFGSGSRIIITSRDE 122 (693)
Q Consensus 100 ~~l~~~~~~~~~~~~iliTtR~~ 122 (693)
+.+...+...-.+..+||||...
T Consensus 187 ~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 187 SVLFELISARYERRSILITANQP 209 (269)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCC
Confidence 22322222111224588888764
No 180
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.53 E-value=0.00071 Score=61.38 Aligned_cols=117 Identities=17% Similarity=0.180 Sum_probs=74.9
Q ss_pred ccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHh--------------------cccceeEEEEccc-
Q 037483 21 RIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLIS--------------------HEFEGSSFLVDEV- 79 (693)
Q Consensus 21 Gr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~--------------------~~f~~~~~~~~~~- 79 (693)
|-++..+.|.+.+..+. -++.+.++|+.|+||+++|.++++.+- ..++...|+....
T Consensus 1 gq~~~~~~L~~~~~~~~--l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~ 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR--LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKK 78 (162)
T ss_dssp S-HHHHHHHHHHHHCTC----SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTS
T ss_pred CcHHHHHHHHHHHHcCC--cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccc
Confidence 55667778888887542 356789999999999999999987541 2345556665421
Q ss_pred -------------------CCCCCeEEEEEecCCCh--hhhhHHhcCCCcCCCCceEEEEeCChH-HHHH-cCCCceeeC
Q 037483 80 -------------------GCNTKKVLLVIDDVVDI--KQLEYLVGKREWFGSGSRIIITSRDEH-LLKT-HGVDELCEP 136 (693)
Q Consensus 80 -------------------~~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTtR~~~-~~~~-~~~~~~~~l 136 (693)
...++.=++|+||++.. +....|+..+......+++|++|++.. +... ......+.+
T Consensus 79 ~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~ 158 (162)
T PF13177_consen 79 KKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRF 158 (162)
T ss_dssp SSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE
T ss_pred cchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEec
Confidence 14456778999999865 346667766666678899988888754 2222 233455666
Q ss_pred CCC
Q 037483 137 NGL 139 (693)
Q Consensus 137 ~~L 139 (693)
.++
T Consensus 159 ~~l 161 (162)
T PF13177_consen 159 RPL 161 (162)
T ss_dssp ---
T ss_pred CCC
Confidence 554
No 181
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.51 E-value=0.00015 Score=65.43 Aligned_cols=37 Identities=19% Similarity=0.156 Sum_probs=17.1
Q ss_pred CCCCCCCEEeCCCCCCcccC----ccccCCCCCCEEecccc
Q 037483 513 GNLCSLKELYLSKNNFVTLP----ASISGLLNLKELELEDC 549 (693)
Q Consensus 513 ~~l~~L~~L~L~~n~l~~lp----~~l~~l~~L~~L~L~~n 549 (693)
..||.|++|.+-+|..+.-+ -.+..+|+|+.||...-
T Consensus 110 a~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 110 ASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 34445555555555444222 12345555555555543
No 182
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.50 E-value=0.00022 Score=61.87 Aligned_cols=54 Identities=30% Similarity=0.397 Sum_probs=43.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcc-cceeEEEEcccCCCCCeEEEEEecCC
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISHE-FEGSSFLVDEVGCNTKKVLLVIDDVV 94 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~LlvlDdv~ 94 (693)
..-|+|+|+||+||||+++.+++.+++. |..+=|++.+..-.++|+=+=+-|+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~ 59 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLA 59 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEcc
Confidence 4568999999999999999999998877 88888888877766777666555553
No 183
>PRK08116 hypothetical protein; Validated
Probab=97.49 E-value=0.00024 Score=70.18 Aligned_cols=79 Identities=19% Similarity=0.140 Sum_probs=49.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc----------------------CCCCCeEEEEEecCC--Chh
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV----------------------GCNTKKVLLVIDDVV--DIK 97 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~----------------------~~~~~~~LlvlDdv~--~~~ 97 (693)
..+.|+|.+|+|||.||.++++.+..+...++++.... .+... =||||||+. ...
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~-dlLviDDlg~e~~t 193 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNA-DLLILDDLGAERDT 193 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCC-CEEEEecccCCCCC
Confidence 46899999999999999999998766544455554310 02222 389999993 222
Q ss_pred hh--hHHhcCCCc-CCCCceEEEEeCC
Q 037483 98 QL--EYLVGKREW-FGSGSRIIITSRD 121 (693)
Q Consensus 98 ~~--~~l~~~~~~-~~~~~~iliTtR~ 121 (693)
.| +.+...++. ...+..+|+||..
T Consensus 194 ~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 194 EWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 22 222222211 1356678888875
No 184
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.49 E-value=0.00016 Score=73.21 Aligned_cols=48 Identities=17% Similarity=0.069 Sum_probs=36.2
Q ss_pred HHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhc-ccceeEEEEc
Q 037483 28 ELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISH-EFEGSSFLVD 77 (693)
Q Consensus 28 ~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~ 77 (693)
++.+++..- +..+..+|+|++|+||||||+++|+.+.. +|+..+|+..
T Consensus 158 rvID~l~PI--GkGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvL 206 (416)
T PRK09376 158 RIIDLIAPI--GKGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLL 206 (416)
T ss_pred eeeeeeccc--ccCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEE
Confidence 344444432 23467899999999999999999998754 6888889765
No 185
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.46 E-value=4.8e-05 Score=84.64 Aligned_cols=155 Identities=26% Similarity=0.255 Sum_probs=103.7
Q ss_pred cccceeccCCcCce--eecCCc-CCCCCCCEEecCCCCCCccCCCCCCCCcccccccccccCCCCccEEecCCCccccCC
Q 037483 362 EDLSELYLDGTFIT--KLPLSI-ELLTGLELLNLNDCKNLLRLPSSIDGCFKLENVSETLGQVEILEELDISGTTIREPP 438 (693)
Q Consensus 362 ~~L~~L~L~~~~l~--~l~~~~-~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~lp 438 (693)
.+|++|+++|...- .-|..+ ..||+|+.|.+++-.+... .+.....++++|..||+|+++++.+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~------------dF~~lc~sFpNL~sLDIS~TnI~nl- 188 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDND------------DFSQLCASFPNLRSLDISGTNISNL- 188 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecch------------hHHHHhhccCccceeecCCCCccCc-
Confidence 57999999886432 222334 4689999999987432211 1223346789999999999999988
Q ss_pred CccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCeeeCCCCCCCCCC-CC----ccCC
Q 037483 439 SSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGA-IP----NDIG 513 (693)
Q Consensus 439 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~-~p----~~l~ 513 (693)
.+++++++|+.|.+.+-.+..... ...+.++++|+.||+|........ +. +.-.
T Consensus 189 ~GIS~LknLq~L~mrnLe~e~~~~---------------------l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~ 247 (699)
T KOG3665|consen 189 SGISRLKNLQVLSMRNLEFESYQD---------------------LIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGM 247 (699)
T ss_pred HHHhccccHHHHhccCCCCCchhh---------------------HHHHhcccCCCeeeccccccccchHHHHHHHHhcc
Confidence 789999999999988754433211 115778899999999988663322 11 1123
Q ss_pred CCCCCCEEeCCCCCCc--ccCccccCCCCCCEEeccccc
Q 037483 514 NLCSLKELYLSKNNFV--TLPASISGLLNLKELELEDCA 550 (693)
Q Consensus 514 ~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~n~ 550 (693)
.||+|+.||.|++.+. .+-..+..-++|+.+.+-+|.
T Consensus 248 ~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~~~ 286 (699)
T KOG3665|consen 248 VLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALDCL 286 (699)
T ss_pred cCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhhhh
Confidence 5889999999998887 223334556677766655443
No 186
>PRK12377 putative replication protein; Provisional
Probab=97.43 E-value=0.0002 Score=69.30 Aligned_cols=37 Identities=16% Similarity=0.121 Sum_probs=30.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEc
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVD 77 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~ 77 (693)
...+.++|.+|+|||+||.++++.+......+.++..
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~ 137 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTV 137 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEH
Confidence 4579999999999999999999987766555566654
No 187
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.42 E-value=0.00041 Score=72.01 Aligned_cols=46 Identities=24% Similarity=0.324 Sum_probs=38.6
Q ss_pred CCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 16 LKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 16 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
..++++.++.++.+...+... +.|.++|++|+|||++|+++++.+.
T Consensus 174 l~d~~i~e~~le~l~~~L~~~-----~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIK-----KNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcC-----CCEEEECCCCCCHHHHHHHHHHHhc
Confidence 356788889999999888753 4588999999999999999998764
No 188
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.40 E-value=0.00081 Score=66.52 Aligned_cols=36 Identities=25% Similarity=0.249 Sum_probs=26.2
Q ss_pred hHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 25 CLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 25 ~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
.++++...+..+ +-|.|.|++|+|||++|+++++..
T Consensus 10 l~~~~l~~l~~g-----~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 10 VTSRALRYLKSG-----YPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred HHHHHHHHHhcC-----CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 344455555432 347799999999999999999754
No 189
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.39 E-value=0.0048 Score=63.14 Aligned_cols=172 Identities=17% Similarity=0.148 Sum_probs=101.5
Q ss_pred cCCCCccccchhHHHHHHHHhcC-CCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccce--eEEEEcc-c----------
Q 037483 14 ETLKKLVRIDSCLEELRSLMDEG-LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEG--SSFLVDE-V---------- 79 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~--~~~~~~~-~---------- 79 (693)
..+..++||+.++..+.+++... .....+.+-|.|-+|.|||.+...++.+....... .+++... .
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH
Confidence 45578999999999999999762 22356789999999999999999999876554433 2444331 0
Q ss_pred -----------C--------------CCCCeEEEEEecCCChhh--hhHHhcCCCcC-CCCceEEEEeCCh------HHH
Q 037483 80 -----------G--------------CNTKKVLLVIDDVVDIKQ--LEYLVGKREWF-GSGSRIIITSRDE------HLL 125 (693)
Q Consensus 80 -----------~--------------~~~~~~LlvlDdv~~~~~--~~~l~~~~~~~-~~~~~iliTtR~~------~~~ 125 (693)
+ -....+|+|+|.++.... -+.+...+.|. -+++++|+.---. ..+
T Consensus 227 ~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~L 306 (529)
T KOG2227|consen 227 FSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFL 306 (529)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHh
Confidence 0 122579999999865432 11122222221 2455554432211 111
Q ss_pred HHc-----CCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHHhhh
Q 037483 126 KTH-----GVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVLGSF 186 (693)
Q Consensus 126 ~~~-----~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~ 186 (693)
... -....+..++-+.++..++|..+.-..... ......++.+++++.|.---++.+-..
T Consensus 307 prL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~-~~~~~Aie~~ArKvaa~SGDlRkaLdv 371 (529)
T KOG2227|consen 307 PRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTS-IFLNAAIELCARKVAAPSGDLRKALDV 371 (529)
T ss_pred hhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccccc-ccchHHHHHHHHHhccCchhHHHHHHH
Confidence 111 124567788999999999998887322211 111223444556665555444444333
No 190
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.39 E-value=0.00091 Score=73.43 Aligned_cols=53 Identities=23% Similarity=0.332 Sum_probs=43.3
Q ss_pred ccCCCCccccchhHHHHHHHHhcCCC--CCeEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 13 SETLKKLVRIDSCLEELRSLMDEGLN--DDVRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 13 ~~~~~~~vGr~~~~~~l~~~l~~~~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
|....+++|-+..++++..++..... ...++++|+|++|+||||+++.++..+
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45557899999999999999976321 235689999999999999999998743
No 191
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.38 E-value=0.00029 Score=68.40 Aligned_cols=38 Identities=21% Similarity=0.099 Sum_probs=32.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhc-ccceeEEEEc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISH-EFEGSSFLVD 77 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~ 77 (693)
....++|.|++|+|||||++.+++.+.. +|+..+|+..
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~v 53 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLL 53 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEE
Confidence 3568999999999999999999997654 6888888763
No 192
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.35 E-value=0.0009 Score=76.62 Aligned_cols=156 Identities=16% Similarity=0.176 Sum_probs=89.0
Q ss_pred CCccccchhHHHHHHHHhcC----------CCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEc-c-----c-
Q 037483 17 KKLVRIDSCLEELRSLMDEG----------LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVD-E-----V- 79 (693)
Q Consensus 17 ~~~vGr~~~~~~l~~~l~~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~-~-----~- 79 (693)
+++.|.++.++++.+.+... .-...+.|.|+|++|+|||++|+++++.....| +.+.. + .
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i~~~~i~~~~~g 254 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISINGPEIMSKYYG 254 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEEecHHHhccccc
Confidence 45889999999998877431 001346799999999999999999998764433 11111 0 0
Q ss_pred ------------CCCCCeEEEEEecCCChh-------------hhhHHhcCCCcC-CCCceEEE-EeCChHHH-HH----
Q 037483 80 ------------GCNTKKVLLVIDDVVDIK-------------QLEYLVGKREWF-GSGSRIII-TSRDEHLL-KT---- 127 (693)
Q Consensus 80 ------------~~~~~~~LlvlDdv~~~~-------------~~~~l~~~~~~~-~~~~~ili-TtR~~~~~-~~---- 127 (693)
.....+.++++|+++... ....+...+... ..+..++| ||....-. ..
T Consensus 255 ~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~ 334 (733)
T TIGR01243 255 ESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRP 334 (733)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCc
Confidence 123456789999985421 122233222211 22333444 55443211 11
Q ss_pred cCCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCch
Q 037483 128 HGVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPL 178 (693)
Q Consensus 128 ~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 178 (693)
......+.++..+.++..+++....-..... + ......+++.+.|.--
T Consensus 335 gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~-~--d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 335 GRFDREIVIRVPDKRARKEILKVHTRNMPLA-E--DVDLDKLAEVTHGFVG 382 (733)
T ss_pred hhccEEEEeCCcCHHHHHHHHHHHhcCCCCc-c--ccCHHHHHHhCCCCCH
Confidence 1224567888888888888887654211111 1 1124557777777653
No 193
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.34 E-value=0.00031 Score=70.80 Aligned_cols=53 Identities=13% Similarity=0.223 Sum_probs=43.8
Q ss_pred cCCCCccccchhHHHHHHHHhcCC---CCCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 14 ETLKKLVRIDSCLEELRSLMDEGL---NDDVRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
....+++|.++.++++.+++.... +...++++|+|++|+||||||.++++.+.
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 334489999999999999997632 23568999999999999999999998653
No 194
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.33 E-value=0.00037 Score=62.93 Aligned_cols=65 Identities=25% Similarity=0.201 Sum_probs=50.8
Q ss_pred ccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccC--ccccCCCCCCEEecccccc
Q 037483 486 SLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLP--ASISGLLNLKELELEDCAL 551 (693)
Q Consensus 486 ~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~L~~n~~ 551 (693)
.|..++.|..|.+.+|+|+. .-|..-..+++|+.|.|.+|++..+. ..+..||.|++|.+-+|+.
T Consensus 59 ~lp~l~rL~tLll~nNrIt~-I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv 125 (233)
T KOG1644|consen 59 NLPHLPRLHTLLLNNNRITR-IDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPV 125 (233)
T ss_pred cCCCccccceEEecCCccee-eccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCch
Confidence 56677888888888888843 23333345678999999999998664 3578899999999999988
No 195
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.0012 Score=69.28 Aligned_cols=137 Identities=20% Similarity=0.188 Sum_probs=81.3
Q ss_pred CCCccccchhHHHHHHHHhcCCC---------CCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEE---EEc---c--
Q 037483 16 LKKLVRIDSCLEELRSLMDEGLN---------DDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSF---LVD---E-- 78 (693)
Q Consensus 16 ~~~~vGr~~~~~~l~~~l~~~~~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~---~~~---~-- 78 (693)
-.++=|.++.+.++.+++..... ..+|-|.+||++|.|||.||++++.+..--|-.+.- +.. +
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESE 268 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESE 268 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccH
Confidence 36788999999999988865221 236889999999999999999999865433311110 000 0
Q ss_pred --------cCCCCCeEEEEEecCCChhh-------------hhHHhcCCCcC------CCCceEEE-EeCChHHH---HH
Q 037483 79 --------VGCNTKKVLLVIDDVVDIKQ-------------LEYLVGKREWF------GSGSRIII-TSRDEHLL---KT 127 (693)
Q Consensus 79 --------~~~~~~~~LlvlDdv~~~~~-------------~~~l~~~~~~~------~~~~~ili-TtR~~~~~---~~ 127 (693)
......++++++|+++.... +..|....+.. +.+..||- |+|...+- ..
T Consensus 269 kkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRR 348 (802)
T KOG0733|consen 269 KKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRR 348 (802)
T ss_pred HHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhc
Confidence 02556799999999964321 22233222211 23333333 55543321 11
Q ss_pred c-CCCceeeCCCCCHHHHHHHHHHhc
Q 037483 128 H-GVDELCEPNGLNYDEALQLLNTKA 152 (693)
Q Consensus 128 ~-~~~~~~~l~~L~~~ea~~l~~~~~ 152 (693)
. ..+..+.+.--++.+-.+++...+
T Consensus 349 aGRFdrEI~l~vP~e~aR~~IL~~~~ 374 (802)
T KOG0733|consen 349 AGRFDREICLGVPSETAREEILRIIC 374 (802)
T ss_pred cccccceeeecCCchHHHHHHHHHHH
Confidence 1 235567777667776667766655
No 196
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.31 E-value=0.0004 Score=58.10 Aligned_cols=52 Identities=25% Similarity=0.369 Sum_probs=35.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhccc----ceeEEEEcc-----cCCCCCeEEEEEecCCCh
Q 037483 44 IGICGMGGLGKTTLVRAVYDLISHEF----EGSSFLVDE-----VGCNTKKVLLVIDDVVDI 96 (693)
Q Consensus 44 v~I~G~~GiGKTtLa~~~~~~~~~~f----~~~~~~~~~-----~~~~~~~~LlvlDdv~~~ 96 (693)
|-|+|.+|+|||++|..++..+.+++ ...+|.... .|-.++ -.+|+||+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~~q-~vvi~DD~~~~ 61 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQGQ-PVVIIDDFGQD 61 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccCCC-cEEEEeecCcc
Confidence 56999999999999999998766443 234444221 144544 56889998544
No 197
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.30 E-value=0.0032 Score=66.07 Aligned_cols=131 Identities=22% Similarity=0.236 Sum_probs=85.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc-----------------CCCCCeEEEEEecCCChhhhhHHhcC
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV-----------------GCNTKKVLLVIDDVVDIKQLEYLVGK 105 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~-----------------~~~~~~~LlvlDdv~~~~~~~~l~~~ 105 (693)
++.|.|+=++||||+++.+.....+. .+++..+. ....++..++||.|+....|+.....
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~ 115 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQNVPDWERALKY 115 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchhhHHHHHHHHHHhhccCCceEEEecccCchhHHHHHHH
Confidence 99999999999999997776655444 34433311 01127789999999999999888777
Q ss_pred CCcCCCCceEEEEeCChHHHHH------cCCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchh
Q 037483 106 REWFGSGSRIIITSRDEHLLKT------HGVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLA 179 (693)
Q Consensus 106 ~~~~~~~~~iliTtR~~~~~~~------~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 179 (693)
+...++. +|++|+-+..+... .+....+++-||+..|-..+-...+ ... ... ..-+-.-..||.|.+
T Consensus 116 l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~----~~~-~~~-~~f~~Yl~~GGfP~~ 188 (398)
T COG1373 116 LYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEI----EPS-KLE-LLFEKYLETGGFPES 188 (398)
T ss_pred HHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhccccc----chh-HHH-HHHHHHHHhCCCcHH
Confidence 6655666 88888887543322 2345678999999999776543111 000 011 112223357999987
Q ss_pred HHHH
Q 037483 180 LKVL 183 (693)
Q Consensus 180 l~~~ 183 (693)
+..-
T Consensus 189 v~~~ 192 (398)
T COG1373 189 VKAD 192 (398)
T ss_pred HhCc
Confidence 6543
No 198
>PRK09183 transposase/IS protein; Provisional
Probab=97.29 E-value=0.00027 Score=69.48 Aligned_cols=80 Identities=24% Similarity=0.234 Sum_probs=46.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEcc-c----------C--------CCCCeEEEEEecCCCh----h
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDE-V----------G--------CNTKKVLLVIDDVVDI----K 97 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~-~----------~--------~~~~~~LlvlDdv~~~----~ 97 (693)
...+.|+|++|+|||+||.+++.........+.|+... . + .....-++|+||+... +
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~~~~~~ 181 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQE 181 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccCCCChH
Confidence 35688999999999999999987654433333444421 0 0 1234459999999532 2
Q ss_pred hhhHHhcCCCc-CCCCceEEEEeCC
Q 037483 98 QLEYLVGKREW-FGSGSRIIITSRD 121 (693)
Q Consensus 98 ~~~~l~~~~~~-~~~~~~iliTtR~ 121 (693)
+.+.+...... ...++ +||||..
T Consensus 182 ~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 182 EANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred HHHHHHHHHHHHHhcCc-EEEecCC
Confidence 22223332211 12344 7888765
No 199
>PRK06696 uridine kinase; Validated
Probab=97.29 E-value=0.00052 Score=66.19 Aligned_cols=47 Identities=19% Similarity=0.140 Sum_probs=39.7
Q ss_pred ccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 21 RIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 21 Gr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
.|++.+++|.+.+.....+++.+|+|.|.+|+||||+|+++++.+..
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46778888988887644557899999999999999999999987754
No 200
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.29 E-value=0.0013 Score=75.25 Aligned_cols=157 Identities=14% Similarity=0.156 Sum_probs=92.2
Q ss_pred CCccccchhHHHHHHHHhcC----------CCCCeEEEEEEcCCCchHHHHHHHHHHHHhccccee-------EEEEccc
Q 037483 17 KKLVRIDSCLEELRSLMDEG----------LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGS-------SFLVDEV 79 (693)
Q Consensus 17 ~~~vGr~~~~~~l~~~l~~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~-------~~~~~~~ 79 (693)
.++.|.++..++|.+.+... .-..++-|.++|++|.|||++|+++++.....|-.. -|+....
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese 532 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESE 532 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHH
Confidence 56788888888887766421 111345689999999999999999998765433111 0111100
Q ss_pred ---------CCCCCeEEEEEecCCChh--------------hhhHHhcCCCcC--CCCceEEEEeCChHHHHH-----cC
Q 037483 80 ---------GCNTKKVLLVIDDVVDIK--------------QLEYLVGKREWF--GSGSRIIITSRDEHLLKT-----HG 129 (693)
Q Consensus 80 ---------~~~~~~~LlvlDdv~~~~--------------~~~~l~~~~~~~--~~~~~iliTtR~~~~~~~-----~~ 129 (693)
.....+.++++|+++... ....+...+... ..+..||.||........ -.
T Consensus 533 ~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgR 612 (733)
T TIGR01243 533 KAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGR 612 (733)
T ss_pred HHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCc
Confidence 134567899999985431 122233332211 234556667765443221 13
Q ss_pred CCceeeCCCCCHHHHHHHHHHhcccCCCC-chHHHHHHHHHHHHhCCCc
Q 037483 130 VDELCEPNGLNYDEALQLLNTKAFKTHKP-LEECAKLSERVPQYAGGLP 177 (693)
Q Consensus 130 ~~~~~~l~~L~~~ea~~l~~~~~~~~~~~-~~~~~~~~~~i~~~~~g~P 177 (693)
.+..+.++..+.++-.++|..+.-+.... ..+ ...+++.+.|.-
T Consensus 613 fd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 613 FDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred cceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 35678899999999999997765322111 111 345666677654
No 201
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.28 E-value=0.0025 Score=63.46 Aligned_cols=136 Identities=21% Similarity=0.255 Sum_probs=85.8
Q ss_pred cCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc--------------
Q 037483 14 ETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV-------------- 79 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~-------------- 79 (693)
...+.+.+|+.++..+..++...+.--+..|.|+|-+|.|||.+++++.+....+ .+|+....
T Consensus 3 ~l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~---~vw~n~~ecft~~~lle~IL~~ 79 (438)
T KOG2543|consen 3 VLEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLE---NVWLNCVECFTYAILLEKILNK 79 (438)
T ss_pred ccccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCc---ceeeehHHhccHHHHHHHHHHH
Confidence 3457899999999999999977554235567999999999999999998865222 23443300
Q ss_pred -----------------------------C--CCCCeEEEEEecCCChhhhhH-----HhcCCCcCCCCceEEEEeCCh-
Q 037483 80 -----------------------------G--CNTKKVLLVIDDVVDIKQLEY-----LVGKREWFGSGSRIIITSRDE- 122 (693)
Q Consensus 80 -----------------------------~--~~~~~~LlvlDdv~~~~~~~~-----l~~~~~~~~~~~~iliTtR~~- 122 (693)
. ..++.+++|||+++...+.+. +............+|+++-..
T Consensus 80 ~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~ 159 (438)
T KOG2543|consen 80 SQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSC 159 (438)
T ss_pred hccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEecccc
Confidence 0 224589999999987655322 222111112234445544432
Q ss_pred --HHHHHcCC--CceeeCCCCCHHHHHHHHHHhc
Q 037483 123 --HLLKTHGV--DELCEPNGLNYDEALQLLNTKA 152 (693)
Q Consensus 123 --~~~~~~~~--~~~~~l~~L~~~ea~~l~~~~~ 152 (693)
.-....+. ..++..+.-+.+|..+++.+.-
T Consensus 160 e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 160 EKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred HHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 12221232 2345677889999999986654
No 202
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.25 E-value=0.00072 Score=63.02 Aligned_cols=93 Identities=20% Similarity=0.312 Sum_probs=53.2
Q ss_pred cchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHH-H-hcccceeEEEEccc--------------------
Q 037483 22 IDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDL-I-SHEFEGSSFLVDEV-------------------- 79 (693)
Q Consensus 22 r~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~-~-~~~f~~~~~~~~~~-------------------- 79 (693)
+..+-....+.+. ...+|.+.|++|.|||.||.+.+-+ + ..+|+..++.....
T Consensus 5 ~~~~Q~~~~~al~-----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~ 79 (205)
T PF02562_consen 5 KNEEQKFALDALL-----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPY 79 (205)
T ss_dssp -SHHHHHHHHHHH-----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TT
T ss_pred CCHHHHHHHHHHH-----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHH
Confidence 3444445555555 2458999999999999999998754 3 45677666665411
Q ss_pred -----------------------------------CCCCCeEEEEEecCCChh--hhhHHhcCCCcCCCCceEEEEeCCh
Q 037483 80 -----------------------------------GCNTKKVLLVIDDVVDIK--QLEYLVGKREWFGSGSRIIITSRDE 122 (693)
Q Consensus 80 -----------------------------------~~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTtR~~ 122 (693)
|..=....+|+|++.+.. ++..+... .+.+|+++++--..
T Consensus 80 ~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD~~ 156 (205)
T PF02562_consen 80 LRPIYDALEELFGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGDPS 156 (205)
T ss_dssp THHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE---
T ss_pred HHHHHHHHHHHhChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecCce
Confidence 122246789999997654 56665544 47999999987654
No 203
>PRK06526 transposase; Provisional
Probab=97.25 E-value=0.00019 Score=70.02 Aligned_cols=55 Identities=22% Similarity=0.140 Sum_probs=36.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc-----------C-------CCCCeEEEEEecCCC
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV-----------G-------CNTKKVLLVIDDVVD 95 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~-----------~-------~~~~~~LlvlDdv~~ 95 (693)
.+-+.|+|++|+|||+||.+++......-..+.|+.... + .-.+.-++|+||+..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~ 170 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGY 170 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEccccc
Confidence 456899999999999999999886544322333432210 0 112345899999964
No 204
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.21 E-value=0.00017 Score=66.47 Aligned_cols=38 Identities=21% Similarity=0.182 Sum_probs=27.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVD 77 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~ 77 (693)
...-+.++|.+|+|||.||.++++.+..+-..+.|+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~ 83 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITA 83 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeec
Confidence 35679999999999999999999876554444556554
No 205
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.19 E-value=0.00018 Score=67.74 Aligned_cols=64 Identities=33% Similarity=0.402 Sum_probs=36.4
Q ss_pred cCCCCcCCeeeCCCC--CCCCCCCCccCCCCCCCCEEeCCCCCCcccC--ccccCCCCCCEEecccccc
Q 037483 487 LSGLCSLSKLDLSYC--GLGEGAIPNDIGNLCSLKELYLSKNNFVTLP--ASISGLLNLKELELEDCAL 551 (693)
Q Consensus 487 l~~l~~L~~L~ls~n--~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~L~~n~~ 551 (693)
+..+++|+.|.+|.| ++ .+.++.....+++|++|++++|++..+. ..+..+.+|..|++.+|.-
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~-~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRV-SGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSV 128 (260)
T ss_pred CCCcchhhhhcccCCcccc-cccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCc
Confidence 444566666666666 44 2333334445567777777777665321 1345566666777766654
No 206
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.19 E-value=0.0052 Score=61.77 Aligned_cols=130 Identities=18% Similarity=0.155 Sum_probs=74.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEc-cc-----C------------------CCCCeEEEEEecCCC
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVD-EV-----G------------------CNTKKVLLVIDDVVD 95 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~-~~-----~------------------~~~~~~LlvlDdv~~ 95 (693)
.++.++|||++|.|||.+|++++.++.-.| +-+.. +. | .++++++|++|+++.
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~elg~~~---i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA 223 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKMGIEP---IVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDA 223 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHcCCCe---EEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhh
Confidence 579999999999999999999999765543 11111 00 0 256899999999852
Q ss_pred hh------------hh--hHHhcCCC--------------cCCCCceEEEEeCChHHHHH--c---CCCceeeCCCCCHH
Q 037483 96 IK------------QL--EYLVGKRE--------------WFGSGSRIIITSRDEHLLKT--H---GVDELCEPNGLNYD 142 (693)
Q Consensus 96 ~~------------~~--~~l~~~~~--------------~~~~~~~iliTtR~~~~~~~--~---~~~~~~~l~~L~~~ 142 (693)
.- +. ..|+...+ ...++..||+||.+...... . ..+..| ..-+.+
T Consensus 224 ~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e 301 (413)
T PLN00020 224 GAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTRE 301 (413)
T ss_pred cCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHH
Confidence 21 11 12221110 12356678888876543211 1 113333 334677
Q ss_pred HHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCch
Q 037483 143 EALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPL 178 (693)
Q Consensus 143 ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 178 (693)
+-.+++..+.-....+. ....++++...|=|+
T Consensus 302 ~R~eIL~~~~r~~~l~~----~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 302 DRIGVVHGIFRDDGVSR----EDVVKLVDTFPGQPL 333 (413)
T ss_pred HHHHHHHHHhccCCCCH----HHHHHHHHcCCCCCc
Confidence 77777776653322221 224456666666554
No 207
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.13 E-value=0.0025 Score=73.18 Aligned_cols=136 Identities=18% Similarity=0.206 Sum_probs=78.7
Q ss_pred CCccccchhHHHHHHHHhcC---CCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeE----------------EEEc
Q 037483 17 KKLVRIDSCLEELRSLMDEG---LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSS----------------FLVD 77 (693)
Q Consensus 17 ~~~vGr~~~~~~l~~~l~~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~----------------~~~~ 77 (693)
.+.+|.++..+++.+++... ......++.++|++|+|||++|+.+++.+...|-... |+..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~ 399 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGA 399 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCC
Confidence 45789999999988866431 1113458999999999999999999987654432211 1111
Q ss_pred ccC--------CCCCeEEEEEecCCChhh------hhHHhcCCCc-----C----------CCCceEEEEeCChHH-H-H
Q 037483 78 EVG--------CNTKKVLLVIDDVVDIKQ------LEYLVGKREW-----F----------GSGSRIIITSRDEHL-L-K 126 (693)
Q Consensus 78 ~~~--------~~~~~~LlvlDdv~~~~~------~~~l~~~~~~-----~----------~~~~~iliTtR~~~~-~-~ 126 (693)
..+ ...++-+++||.++.... ...+...+.. + ..+..+|.||..... . .
T Consensus 400 ~~g~i~~~l~~~~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~ 479 (775)
T TIGR00763 400 MPGRIIQGLKKAKTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRP 479 (775)
T ss_pred CCchHHHHHHHhCcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHH
Confidence 000 122334789999965421 1222221110 0 023334445544221 1 1
Q ss_pred HcCCCceeeCCCCCHHHHHHHHHHhc
Q 037483 127 THGVDELCEPNGLNYDEALQLLNTKA 152 (693)
Q Consensus 127 ~~~~~~~~~l~~L~~~ea~~l~~~~~ 152 (693)
......++++.+++.++-.+++..+.
T Consensus 480 L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 480 LLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred HhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 11233578999999999888887654
No 208
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.13 E-value=0.00097 Score=63.62 Aligned_cols=37 Identities=27% Similarity=0.432 Sum_probs=30.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEc
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVD 77 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~ 77 (693)
.-.++|.|..|.|||+++..+.......|+.+.++..
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITP 49 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEec
Confidence 3468899999999999999999988888877666544
No 209
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0023 Score=70.35 Aligned_cols=164 Identities=18% Similarity=0.204 Sum_probs=99.7
Q ss_pred CCCCccccchhHHHHHHHHhcCCC---------CCeEEEEEEcCCCchHHHHHHHHHHHHh--------cccceeEEEEc
Q 037483 15 TLKKLVRIDSCLEELRSLMDEGLN---------DDVRMIGICGMGGLGKTTLVRAVYDLIS--------HEFEGSSFLVD 77 (693)
Q Consensus 15 ~~~~~vGr~~~~~~l~~~l~~~~~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~--------~~f~~~~~~~~ 77 (693)
.-+++.|.|+..++|.+...--.+ .-++-|.|+|++|.|||-||++++-+.. .+|--..|-..
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~ 388 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVG 388 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccc
Confidence 346899999888888776533111 1367899999999999999999986321 11111111000
Q ss_pred --------ccCCCCCeEEEEEecCCChh-----------------hhhHHhcCCCcCCCC--ceEEEEeCChHHHHH---
Q 037483 78 --------EVGCNTKKVLLVIDDVVDIK-----------------QLEYLVGKREWFGSG--SRIIITSRDEHLLKT--- 127 (693)
Q Consensus 78 --------~~~~~~~~~LlvlDdv~~~~-----------------~~~~l~~~~~~~~~~--~~iliTtR~~~~~~~--- 127 (693)
.......++.+.+|+++... .+..+....+.+... ..++-+|+..++...
T Consensus 389 asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~all 468 (774)
T KOG0731|consen 389 ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALL 468 (774)
T ss_pred hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhc
Confidence 00245567888888774321 133344433333333 334445655544332
Q ss_pred --cCCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhH
Q 037483 128 --HGVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLAL 180 (693)
Q Consensus 128 --~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 180 (693)
-..+..+.++.-+.....++|.-++-..... .+..++++ |+..+-|++-|.
T Consensus 469 rpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 469 RPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHHH
Confidence 2336678888888899999998888443333 34555666 999999988654
No 210
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.11 E-value=0.0076 Score=56.95 Aligned_cols=158 Identities=18% Similarity=0.175 Sum_probs=89.9
Q ss_pred HHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc----------------------------
Q 037483 28 ELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV---------------------------- 79 (693)
Q Consensus 28 ~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~---------------------------- 79 (693)
+....+.....++.+++.++|.-|.|||.+++++.....+.=-.++.+....
T Consensus 38 e~l~~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~ 117 (269)
T COG3267 38 EALLMLHAAIADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQ 117 (269)
T ss_pred HHHHHHHHHHhcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHH
Confidence 3333333333346679999999999999999966554433222222333211
Q ss_pred --------CCCCCe-EEEEEecCCChh--hhhHHhcC--C-CcCCCCceEEEEeCCh--------HHHHHcCCCce-eeC
Q 037483 80 --------GCNTKK-VLLVIDDVVDIK--QLEYLVGK--R-EWFGSGSRIIITSRDE--------HLLKTHGVDEL-CEP 136 (693)
Q Consensus 80 --------~~~~~~-~LlvlDdv~~~~--~~~~l~~~--~-~~~~~~~~iliTtR~~--------~~~~~~~~~~~-~~l 136 (693)
-.++++ +.+++|+.++.. .++.+... . ......-+|+..-..+ ..........+ |++
T Consensus 118 ~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l 197 (269)
T COG3267 118 IDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIEL 197 (269)
T ss_pred HHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEec
Confidence 034556 999999996542 23333221 1 1111112233322221 11111111223 899
Q ss_pred CCCCHHHHHHHHHHhcccCCCCchH-HHHHHHHHHHHhCCCchhHHHHhh
Q 037483 137 NGLNYDEALQLLNTKAFKTHKPLEE-CAKLSERVPQYAGGLPLALKVLGS 185 (693)
Q Consensus 137 ~~L~~~ea~~l~~~~~~~~~~~~~~-~~~~~~~i~~~~~g~Plal~~~~~ 185 (693)
++++.++...++..+..+...+.+- ..+....|.....|.|.+|..++.
T Consensus 198 ~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 198 PPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred CCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 9999999999998886443332221 234566788899999999998864
No 211
>PRK06921 hypothetical protein; Provisional
Probab=97.11 E-value=0.00053 Score=67.58 Aligned_cols=53 Identities=25% Similarity=0.216 Sum_probs=38.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcc-cceeEEEEccc----------------CCCCCeEEEEEecC
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISHE-FEGSSFLVDEV----------------GCNTKKVLLVIDDV 93 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~----------------~~~~~~~LlvlDdv 93 (693)
...+.++|.+|+|||+||.++++.+..+ ...++|+.... ..-.+--||||||+
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl 186 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDL 186 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 5679999999999999999999987665 44455665411 01123468999999
No 212
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.0027 Score=68.44 Aligned_cols=136 Identities=18% Similarity=0.282 Sum_probs=86.8
Q ss_pred CCccccchhHHHHHHHHhcC---CCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEE--EEcc--c----------
Q 037483 17 KKLVRIDSCLEELRSLMDEG---LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSF--LVDE--V---------- 79 (693)
Q Consensus 17 ~~~vGr~~~~~~l~~~l~~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~--~~~~--~---------- 79 (693)
.+=+|.++..++|.+.|.-. ..-...++.++|+||+|||.|++.+++.+...|-.... +.++ .
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGa 402 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGA 402 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccccccccc
Confidence 45689999999999988652 12235799999999999999999999988777632221 1111 1
Q ss_pred ----------CCCCCeEEEEEecCCChhh----------hhHHhcCCC-cCC--------CCc-eEEEEeCCh-H-H-HH
Q 037483 80 ----------GCNTKKVLLVIDDVVDIKQ----------LEYLVGKRE-WFG--------SGS-RIIITSRDE-H-L-LK 126 (693)
Q Consensus 80 ----------~~~~~~~LlvlDdv~~~~~----------~~~l~~~~~-~~~--------~~~-~iliTtR~~-~-~-~~ 126 (693)
....+.-+++||.++.... ++.|-+..+ .|. .=| .+.|||-+. + + ..
T Consensus 403 mPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~P 482 (782)
T COG0466 403 MPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAP 482 (782)
T ss_pred CChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChH
Confidence 1455778999999964421 222222111 000 113 345555542 1 1 12
Q ss_pred HcCCCceeeCCCCCHHHHHHHHHHhc
Q 037483 127 THGVDELCEPNGLNYDEALQLLNTKA 152 (693)
Q Consensus 127 ~~~~~~~~~l~~L~~~ea~~l~~~~~ 152 (693)
..+.-+++++.+-+++|-.++-+++.
T Consensus 483 LlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 483 LLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred HhcceeeeeecCCChHHHHHHHHHhc
Confidence 23445789999999999998887776
No 213
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.07 E-value=0.0009 Score=59.24 Aligned_cols=34 Identities=35% Similarity=0.418 Sum_probs=26.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhcccceeEEE
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFL 75 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 75 (693)
+.+.|+|++|+||||+|+.++..+.......+++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~ 36 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYI 36 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEE
Confidence 5789999999999999999998766554233443
No 214
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.07 E-value=0.0011 Score=64.12 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=29.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEc
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVD 77 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~ 77 (693)
...+.++|.+|+|||+||.++++.+......+.++..
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~ 135 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITV 135 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEH
Confidence 4578999999999999999999987655445555544
No 215
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.07 E-value=0.00087 Score=68.43 Aligned_cols=38 Identities=18% Similarity=0.075 Sum_probs=32.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcc-cceeEEEEc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISHE-FEGSSFLVD 77 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~ 77 (693)
..+.++|+|++|.|||||++.+++.+... |+..+|+..
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlL 205 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLL 205 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEE
Confidence 34679999999999999999999987655 888888765
No 216
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.07 E-value=0.0043 Score=67.82 Aligned_cols=45 Identities=20% Similarity=0.340 Sum_probs=36.9
Q ss_pred CCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 037483 17 KKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDL 64 (693)
Q Consensus 17 ~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 64 (693)
++++|.+..++.+...+... ...-|.|+|++|+|||++|+.+++.
T Consensus 65 ~~iiGqs~~i~~l~~al~~~---~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP---NPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC---CCceEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999998776432 2356789999999999999999864
No 217
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.05 E-value=0.00053 Score=58.98 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
+|+|.|++|+||||+|++++++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999865
No 218
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.05 E-value=1.7e-05 Score=79.09 Aligned_cols=64 Identities=28% Similarity=0.376 Sum_probs=32.8
Q ss_pred cCCCCCCcEEEcCCCCCccc--chhhhcCccccceeccCCc-Cceee--cCCcCCCCCCCEEecCCCCC
Q 037483 334 LSSLKCLRTLELSGCSKLKR--FLEIVASMEDLSELYLDGT-FITKL--PLSIELLTGLELLNLNDCKN 397 (693)
Q Consensus 334 l~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~L~~~-~l~~l--~~~~~~l~~L~~L~L~~~~~ 397 (693)
..++|+++.|++.+|...+. .-..-..+++|++|+|..| .++.. -.....+++|++|+++.|.-
T Consensus 160 ~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~q 228 (483)
T KOG4341|consen 160 ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQ 228 (483)
T ss_pred hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCch
Confidence 34566666666666654332 1222344566666666663 34421 11124556666666666643
No 219
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.04 E-value=0.019 Score=58.43 Aligned_cols=112 Identities=14% Similarity=0.094 Sum_probs=70.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhc----------------------ccceeEEEEcc------------c------
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISH----------------------EFEGSSFLVDE------------V------ 79 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~----------------------~f~~~~~~~~~------------~------ 79 (693)
-.+.+.++|+.|+|||++|+.+++.+-- ..+...++..+ .
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR 99 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVR 99 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHH
Confidence 4678999999999999999999886420 12334444321 1
Q ss_pred ---------CCCCCeEEEEEecCCChh--hhhHHhcCCCcCCCCceEEEEeCChH-HHHH-cCCCceeeCCCCCHHHHHH
Q 037483 80 ---------GCNTKKVLLVIDDVVDIK--QLEYLVGKREWFGSGSRIIITSRDEH-LLKT-HGVDELCEPNGLNYDEALQ 146 (693)
Q Consensus 80 ---------~~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTtR~~~-~~~~-~~~~~~~~l~~L~~~ea~~ 146 (693)
...+++-++|+|+++..+ ....+...+.....++.+|++|.+.. +... ......+.+.+++.+++.+
T Consensus 100 ~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~ 179 (325)
T PRK08699 100 EIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALA 179 (325)
T ss_pred HHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHH
Confidence 122344455668887653 33444443333345666777777643 3322 2235678999999999999
Q ss_pred HHHHh
Q 037483 147 LLNTK 151 (693)
Q Consensus 147 l~~~~ 151 (693)
.+...
T Consensus 180 ~L~~~ 184 (325)
T PRK08699 180 YLRER 184 (325)
T ss_pred HHHhc
Confidence 88654
No 220
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.03 E-value=0.0053 Score=57.19 Aligned_cols=107 Identities=20% Similarity=0.184 Sum_probs=69.4
Q ss_pred CCCccccchhHHHHHHHHhc-CCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEcc-----------cCCCC
Q 037483 16 LKKLVRIDSCLEELRSLMDE-GLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDE-----------VGCNT 83 (693)
Q Consensus 16 ~~~~vGr~~~~~~l~~~l~~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~-----------~~~~~ 83 (693)
-..++|.|...+.|.+--.. ..+-..--|.+||.-|.|||.|++++.+.+..+....+=+..+ ....+
T Consensus 59 L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~Lp~l~~~Lr~~~ 138 (287)
T COG2607 59 LADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLATLPDLVELLRARP 138 (287)
T ss_pred HHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhhHHHHHHHHhcCC
Confidence 46799999999888754332 1111234589999999999999999999988876653222221 14778
Q ss_pred CeEEEEEecCC---ChhhhhHHhcCCC---cCCCCceEEEEeCCh
Q 037483 84 KKVLLVIDDVV---DIKQLEYLVGKRE---WFGSGSRIIITSRDE 122 (693)
Q Consensus 84 ~~~LlvlDdv~---~~~~~~~l~~~~~---~~~~~~~iliTtR~~ 122 (693)
.|+++..||.. ..+....+...+. ...|...++..|.++
T Consensus 139 ~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 139 EKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred ceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 99999999983 2333444443332 223455555555553
No 221
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.01 E-value=0.00085 Score=68.00 Aligned_cols=80 Identities=18% Similarity=0.108 Sum_probs=49.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc----------CC----------CCCeEEEEEecCCCh--hh-
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV----------GC----------NTKKVLLVIDDVVDI--KQ- 98 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~----------~~----------~~~~~LlvlDdv~~~--~~- 98 (693)
..+.++|.+|+|||+||.++++.+..+...++|+.... .. -..-=||||||+... ..
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e~~t~~ 263 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTEKITEF 263 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCCCCCHH
Confidence 66999999999999999999998765545566665511 00 012357999999432 22
Q ss_pred -hhHHhcCCCcC-CCCceEEEEeCC
Q 037483 99 -LEYLVGKREWF-GSGSRIIITSRD 121 (693)
Q Consensus 99 -~~~l~~~~~~~-~~~~~iliTtR~ 121 (693)
.+.+...+... ..+..+||||.-
T Consensus 264 ~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 264 SKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred HHHHHHHHHHHHHHCCCCEEEECCC
Confidence 22333222211 235568888875
No 222
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.00 E-value=0.0011 Score=66.55 Aligned_cols=101 Identities=17% Similarity=0.181 Sum_probs=58.1
Q ss_pred ccchhHHHHHHHHhcCC-CCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEcc-c----------C-------C
Q 037483 21 RIDSCLEELRSLMDEGL-NDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDE-V----------G-------C 81 (693)
Q Consensus 21 Gr~~~~~~l~~~l~~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~-~----------~-------~ 81 (693)
+|...++...+++..-. +...+-+.|+|..|+|||.||.++++.+..+-..+.|+... . + .
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~ 214 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDA 214 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34444444455554322 11346799999999999999999999876543334455431 1 0 1
Q ss_pred CCCeEEEEEecCCC--hhhhh--HHhcCC-CcC-CCCceEEEEeCC
Q 037483 82 NTKKVLLVIDDVVD--IKQLE--YLVGKR-EWF-GSGSRIIITSRD 121 (693)
Q Consensus 82 ~~~~~LlvlDdv~~--~~~~~--~l~~~~-~~~-~~~~~iliTtR~ 121 (693)
-.+-=||||||+.. ...|. .+.... ... ..+..+|+||--
T Consensus 215 l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 215 VKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred hcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 12455899999943 33342 232221 211 245567777764
No 223
>PHA00729 NTP-binding motif containing protein
Probab=96.99 E-value=0.0024 Score=60.21 Aligned_cols=27 Identities=30% Similarity=0.176 Sum_probs=23.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
+...|+|+|.+|+||||||.++++++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 566899999999999999999998753
No 224
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.98 E-value=0.0028 Score=67.34 Aligned_cols=157 Identities=16% Similarity=0.161 Sum_probs=104.7
Q ss_pred CCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc---------------------cceeEEE
Q 037483 17 KKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHE---------------------FEGSSFL 75 (693)
Q Consensus 17 ~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---------------------f~~~~~~ 75 (693)
+++||-+.....|...+..+. -.+.-...|+-|+||||+|+-++..+--. |..++-+
T Consensus 16 ~evvGQe~v~~~L~nal~~~r--i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEi 93 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR--IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEI 93 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc--chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhh
Confidence 567999999999999998643 25667899999999999999998743110 1111111
Q ss_pred Ecc--c---------------CCCCCeEEEEEecCCCh--hhhhHHhcCCCcCCCCceEEEEeCCh-HHHHH-cCCCcee
Q 037483 76 VDE--V---------------GCNTKKVLLVIDDVVDI--KQLEYLVGKREWFGSGSRIIITSRDE-HLLKT-HGVDELC 134 (693)
Q Consensus 76 ~~~--~---------------~~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTtR~~-~~~~~-~~~~~~~ 134 (693)
+.. . -..++.=++|+|.|+-. ..+..++..+..-.+....|..|.+. .+... ....+.|
T Consensus 94 DaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f 173 (515)
T COG2812 94 DAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRF 173 (515)
T ss_pred hhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccc
Confidence 110 0 15667778999999754 45888888777556666666666654 33322 2346789
Q ss_pred eCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCc
Q 037483 135 EPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLP 177 (693)
Q Consensus 135 ~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 177 (693)
.+..++.++-...+...+-...... ..+....|++..+|..
T Consensus 174 ~fkri~~~~I~~~L~~i~~~E~I~~--e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 174 DFKRLDLEEIAKHLAAILDKEGINI--EEDALSLIARAAEGSL 214 (515)
T ss_pred cccCCCHHHHHHHHHHHHHhcCCcc--CHHHHHHHHHHcCCCh
Confidence 9999999999998888874433322 2333555666666644
No 225
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.97 E-value=0.0032 Score=71.70 Aligned_cols=136 Identities=14% Similarity=0.149 Sum_probs=82.0
Q ss_pred CCccccchhHHHHHHHHhcC---CCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEc----------------
Q 037483 17 KKLVRIDSCLEELRSLMDEG---LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVD---------------- 77 (693)
Q Consensus 17 ~~~vGr~~~~~~l~~~l~~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~---------------- 77 (693)
.+.+|.++..+++.+++... ......++.++|++|+||||+|+.++..+...|-...+-..
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~ 401 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGS 401 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCC
Confidence 46899999999999888642 11245679999999999999999999876544422211100
Q ss_pred ccC--------CCCCeEEEEEecCCChhh------hhHHhcCCCcC---------------CCCceEEEEeCChHHHHH-
Q 037483 78 EVG--------CNTKKVLLVIDDVVDIKQ------LEYLVGKREWF---------------GSGSRIIITSRDEHLLKT- 127 (693)
Q Consensus 78 ~~~--------~~~~~~LlvlDdv~~~~~------~~~l~~~~~~~---------------~~~~~iliTtR~~~~~~~- 127 (693)
..| .....-+++||.++.... ...+...+... -....+|.|+....+...
T Consensus 402 ~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~aL 481 (784)
T PRK10787 402 MPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPL 481 (784)
T ss_pred CCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCCCCHHH
Confidence 000 111334789999964321 23333322210 133444555544322111
Q ss_pred cCCCceeeCCCCCHHHHHHHHHHhc
Q 037483 128 HGVDELCEPNGLNYDEALQLLNTKA 152 (693)
Q Consensus 128 ~~~~~~~~l~~L~~~ea~~l~~~~~ 152 (693)
.+...++++.+++.+|-.++..++.
T Consensus 482 l~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 482 LDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred hcceeeeecCCCCHHHHHHHHHHhh
Confidence 1224578999999999999887776
No 226
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.0033 Score=61.00 Aligned_cols=36 Identities=25% Similarity=0.417 Sum_probs=29.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH----hcccceeEEEE
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLI----SHEFEGSSFLV 76 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~----~~~f~~~~~~~ 76 (693)
-|+|.++|+||.|||+|.+++++++ .++|..+..+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE 216 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE 216 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE
Confidence 4899999999999999999999965 35566555554
No 227
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.97 E-value=0.0013 Score=64.33 Aligned_cols=38 Identities=21% Similarity=0.188 Sum_probs=29.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVD 77 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~ 77 (693)
+..-+.++|.+|+|||.||.++++++...--.+.|+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~ 141 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITA 141 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 35569999999999999999999988744344445443
No 228
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.0047 Score=68.47 Aligned_cols=133 Identities=17% Similarity=0.204 Sum_probs=81.1
Q ss_pred CCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc-cc----eeEEEEccc----------C
Q 037483 16 LKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHE-FE----GSSFLVDEV----------G 80 (693)
Q Consensus 16 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~----~~~~~~~~~----------~ 80 (693)
-++++||+++++++.+.|.....+. -.++|.||+|||++|.-+++++... -+ ....+.... |
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNN---PvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRG 245 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNN---PVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRG 245 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCC---CeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccC
Confidence 3689999999999999998744322 4578999999999999999876432 11 111222111 0
Q ss_pred -------------CCCCeEEEEEecCCChh-----------hhhHHhcCCCcCCCCceEEEEeCChHH--H----HHcCC
Q 037483 81 -------------CNTKKVLLVIDDVVDIK-----------QLEYLVGKREWFGSGSRIIITSRDEHL--L----KTHGV 130 (693)
Q Consensus 81 -------------~~~~~~LlvlDdv~~~~-----------~~~~l~~~~~~~~~~~~iliTtR~~~~--~----~~~~~ 130 (693)
.+..++.+++|.++..- .-.-+.+.+. .+.--.|=.||=++-- . .....
T Consensus 246 eFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA-RGeL~~IGATT~~EYRk~iEKD~AL~RR 324 (786)
T COG0542 246 EFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA-RGELRCIGATTLDEYRKYIEKDAALERR 324 (786)
T ss_pred cHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh-cCCeEEEEeccHHHHHHHhhhchHHHhc
Confidence 22348999999985431 1112222221 1222234445544211 0 11123
Q ss_pred CceeeCCCCCHHHHHHHHHHhc
Q 037483 131 DELCEPNGLNYDEALQLLNTKA 152 (693)
Q Consensus 131 ~~~~~l~~L~~~ea~~l~~~~~ 152 (693)
.+.+.|+..+.+++..+++-..
T Consensus 325 FQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 325 FQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred CceeeCCCCCHHHHHHHHHHHH
Confidence 5678899999999999987654
No 229
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.92 E-value=0.00048 Score=65.00 Aligned_cols=61 Identities=25% Similarity=0.135 Sum_probs=30.4
Q ss_pred CCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccC----ccccCCCCCCEEeccccc
Q 037483 490 LCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLP----ASISGLLNLKELELEDCA 550 (693)
Q Consensus 490 l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp----~~l~~l~~L~~L~L~~n~ 550 (693)
+++|++|++++|++..-.--..+..+.+|..|++.+|..+.+- ..+.-+++|++|+-.+..
T Consensus 90 ~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 90 APNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred CCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 3556666666665532000112334555666666666555432 123445666666654443
No 230
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.92 E-value=0.0048 Score=63.55 Aligned_cols=126 Identities=19% Similarity=0.084 Sum_probs=80.8
Q ss_pred CccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccc---------------------ceeEEEE
Q 037483 18 KLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEF---------------------EGSSFLV 76 (693)
Q Consensus 18 ~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f---------------------~~~~~~~ 76 (693)
.++|-+....++..+...... ..+.+.++|++|+||||+|.++++.+-... +....+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~-~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~ 80 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGR-LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN 80 (325)
T ss_pred CcccchhHHHHHHHHHHhcCC-CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec
Confidence 467788888888888874332 455799999999999999999998764221 2333332
Q ss_pred ccc---------------------CCCCCeEEEEEecCCChhh--hhHHhcCCCcCCCCceEEEEeCCh-HHHHHc-CCC
Q 037483 77 DEV---------------------GCNTKKVLLVIDDVVDIKQ--LEYLVGKREWFGSGSRIIITSRDE-HLLKTH-GVD 131 (693)
Q Consensus 77 ~~~---------------------~~~~~~~LlvlDdv~~~~~--~~~l~~~~~~~~~~~~iliTtR~~-~~~~~~-~~~ 131 (693)
... +..++.-++++|+++.... ...+..........+.+|++|... .+.... ...
T Consensus 81 ~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SRc 160 (325)
T COG0470 81 PSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSRC 160 (325)
T ss_pred ccccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhcc
Confidence 211 1346788999999987643 455555555556778888877743 333322 224
Q ss_pred ceeeCCCCCHHHH
Q 037483 132 ELCEPNGLNYDEA 144 (693)
Q Consensus 132 ~~~~l~~L~~~ea 144 (693)
..+++.+.+..+.
T Consensus 161 ~~i~f~~~~~~~~ 173 (325)
T COG0470 161 QRIRFKPPSRLEA 173 (325)
T ss_pred eeeecCCchHHHH
Confidence 5666666444333
No 231
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.91 E-value=0.093 Score=52.70 Aligned_cols=50 Identities=12% Similarity=0.131 Sum_probs=35.9
Q ss_pred ccCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 13 SETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 13 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
|...+.++=..+....+...+... +-|.|.|.+|+|||++|++++..+..
T Consensus 41 p~~d~~y~f~~~~~~~vl~~l~~~-----~~ilL~G~pGtGKTtla~~lA~~l~~ 90 (327)
T TIGR01650 41 PDIDPAYLFDKATTKAICAGFAYD-----RRVMVQGYHGTGKSTHIEQIAARLNW 90 (327)
T ss_pred CCCCCCccCCHHHHHHHHHHHhcC-----CcEEEEeCCCChHHHHHHHHHHHHCC
Confidence 344445555555666677666532 35999999999999999999986543
No 232
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.89 E-value=0.0086 Score=68.45 Aligned_cols=51 Identities=22% Similarity=0.315 Sum_probs=40.4
Q ss_pred CCCccccchhHHHHHHHHhcC-----CCC-CeEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 16 LKKLVRIDSCLEELRSLMDEG-----LND-DVRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 16 ~~~~vGr~~~~~~l~~~l~~~-----~~~-~~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
...++|.++.++.+.+.+... .++ ...++.++|++|+|||+||+.+++.+.
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 467899999999998888642 111 235689999999999999999998763
No 233
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.0043 Score=66.22 Aligned_cols=158 Identities=16% Similarity=0.211 Sum_probs=92.8
Q ss_pred CCccccchhHHHHHHHHhcCC----------CCCeEEEEEEcCCCchHHHHHHHHHHHHhccccee-------EEEEccc
Q 037483 17 KKLVRIDSCLEELRSLMDEGL----------NDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGS-------SFLVDEV 79 (693)
Q Consensus 17 ~~~vGr~~~~~~l~~~l~~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~-------~~~~~~~ 79 (693)
+++=|.|+...+|.+.+.... -..++-|.++|+||.|||++|+++++.-...|-.+ -|+....
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSE 513 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESE 513 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchH
Confidence 455568887788876654421 12578899999999999999999999766655332 2332211
Q ss_pred ---------CCCCCeEEEEEecCCChhh-------------hhHHhcCCCcCCCCceEEE---EeCChHH----HHHcCC
Q 037483 80 ---------GCNTKKVLLVIDDVVDIKQ-------------LEYLVGKREWFGSGSRIII---TSRDEHL----LKTHGV 130 (693)
Q Consensus 80 ---------~~~~~~~LlvlDdv~~~~~-------------~~~l~~~~~~~~~~~~ili---TtR~~~~----~~~~~~ 130 (693)
..+-.++++.||.++.... +..++..++.......|+| |-|...+ ...-..
T Consensus 514 r~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRl 593 (693)
T KOG0730|consen 514 RAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRL 593 (693)
T ss_pred HHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCccc
Confidence 2344569999998854321 3334444443333333333 3333222 111124
Q ss_pred CceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCc
Q 037483 131 DELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLP 177 (693)
Q Consensus 131 ~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 177 (693)
+..+.++.-+.+.-.++|+.++-+-.... ..+ ..+|++++.|.-
T Consensus 594 D~iiyVplPD~~aR~~Ilk~~~kkmp~~~--~vd-l~~La~~T~g~S 637 (693)
T KOG0730|consen 594 DRIIYVPLPDLEARLEILKQCAKKMPFSE--DVD-LEELAQATEGYS 637 (693)
T ss_pred ceeEeecCccHHHHHHHHHHHHhcCCCCc--ccc-HHHHHHHhccCC
Confidence 67888888888888899988873221111 111 345666666655
No 234
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.86 E-value=0.0056 Score=70.82 Aligned_cols=51 Identities=16% Similarity=0.315 Sum_probs=40.2
Q ss_pred CCCccccchhHHHHHHHHhcCC-----CCC-eEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 16 LKKLVRIDSCLEELRSLMDEGL-----NDD-VRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 16 ~~~~vGr~~~~~~l~~~l~~~~-----~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
...++|.+..++.+...+.... +++ ...+.++|++|+|||++|+.+++.+.
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~ 623 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMF 623 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 3578999999999988886421 112 35789999999999999999998653
No 235
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.85 E-value=0.00035 Score=61.70 Aligned_cols=100 Identities=20% Similarity=0.229 Sum_probs=59.0
Q ss_pred cccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEc---cc----CCCCCeEEEEEec
Q 037483 20 VRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVD---EV----GCNTKKVLLVIDD 92 (693)
Q Consensus 20 vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~---~~----~~~~~~~LlvlDd 92 (693)
||+...++++.+.+..-.. ...-|.|+|.+|+||+++|+.++..-... ...++.. .. -...+.--++++|
T Consensus 1 vG~S~~~~~l~~~l~~~a~-~~~pvli~GE~GtGK~~~A~~lh~~~~~~--~~~~~~~~~~~~~~~~l~~a~~gtL~l~~ 77 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK-SSSPVLITGEPGTGKSLLARALHRYSGRA--NGPFIVIDCASLPAELLEQAKGGTLYLKN 77 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC-SSS-EEEECCTTSSHHHHHHCCHHTTTTC--CS-CCCCCHHCTCHHHHHHCTTSEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCHHHHHHHHHhhcCcc--CCCeEEechhhCcHHHHHHcCCCEEEECC
Confidence 6888888888888876443 34568999999999999999988743221 1112211 00 0011444578999
Q ss_pred CCChhh--hhHHhcCCCc-CCCCceEEEEeCCh
Q 037483 93 VVDIKQ--LEYLVGKREW-FGSGSRIIITSRDE 122 (693)
Q Consensus 93 v~~~~~--~~~l~~~~~~-~~~~~~iliTtR~~ 122 (693)
++.... ...+...+.. .....|+|.||+..
T Consensus 78 i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 78 IDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp GCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred hHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 976543 2333322221 14678999999863
No 236
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.84 E-value=0.0035 Score=72.20 Aligned_cols=51 Identities=20% Similarity=0.335 Sum_probs=40.4
Q ss_pred CCCccccchhHHHHHHHHhcC------CCCCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 16 LKKLVRIDSCLEELRSLMDEG------LNDDVRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 16 ~~~~vGr~~~~~~l~~~l~~~------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
...++|.+..++.+.+.+... +.....++.++|++|+|||.+|+++++.+-
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~ 621 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLY 621 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 357899999999998888541 122345789999999999999999988763
No 237
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.83 E-value=0.015 Score=62.69 Aligned_cols=53 Identities=30% Similarity=0.432 Sum_probs=41.4
Q ss_pred ccCCCCccccchhHHHHHHHHhcCC--CCCeEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 13 SETLKKLVRIDSCLEELRSLMDEGL--NDDVRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 13 ~~~~~~~vGr~~~~~~l~~~l~~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
|....+++--.+-++++.+||...- ....+++.++|++|+||||.++.+++.+
T Consensus 15 P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 15 PKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred CCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 3444566667778899999997632 2246799999999999999999999864
No 238
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.81 E-value=0.0019 Score=63.04 Aligned_cols=38 Identities=29% Similarity=0.452 Sum_probs=32.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVD 77 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~ 77 (693)
+.+.++|.|.+|+|||+|+..+++.++.+|+..+++..
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~ 105 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAG 105 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEE
Confidence 45779999999999999999999999888877776654
No 239
>PRK07667 uridine kinase; Provisional
Probab=96.81 E-value=0.0031 Score=59.18 Aligned_cols=42 Identities=29% Similarity=0.433 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 26 LEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 26 ~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
++++.+.+....+ ...+|+|.|.+|+||||+|..+.+.+...
T Consensus 3 ~~~~~~~~~~~~~-~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 3 TNELINIMKKHKE-NRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHHhcCC-CCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 4566666655444 56899999999999999999999887653
No 240
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.80 E-value=0.0022 Score=56.83 Aligned_cols=37 Identities=30% Similarity=0.229 Sum_probs=29.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEc
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVD 77 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~ 77 (693)
..+|.|+|.+|.||||||+++.+++.+.-....++..
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDg 38 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDG 38 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecC
Confidence 4789999999999999999999998877655555543
No 241
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.79 E-value=0.0032 Score=57.34 Aligned_cols=33 Identities=27% Similarity=0.256 Sum_probs=24.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhcccceeEEE
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLISHEFEGSSFL 75 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 75 (693)
++.|+|.+|+|||+++..++......-..++|+
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~ 33 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYV 33 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEE
Confidence 368999999999999999988665433334444
No 242
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.78 E-value=0.001 Score=56.19 Aligned_cols=32 Identities=31% Similarity=0.496 Sum_probs=22.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhcccceeEEE
Q 037483 44 IGICGMGGLGKTTLVRAVYDLISHEFEGSSFL 75 (693)
Q Consensus 44 v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 75 (693)
|.|+|.+|+|||++|++++..+...|..+.+-
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq~t 33 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQFT 33 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE--
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEEec
Confidence 68999999999999999999888888765553
No 243
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.0044 Score=64.21 Aligned_cols=135 Identities=19% Similarity=0.207 Sum_probs=73.6
Q ss_pred CCccccchhHHHHHHH---HhcCC------CCCeEEEEEEcCCCchHHHHHHHHHHHH--------hcccceeEEEEc--
Q 037483 17 KKLVRIDSCLEELRSL---MDEGL------NDDVRMIGICGMGGLGKTTLVRAVYDLI--------SHEFEGSSFLVD-- 77 (693)
Q Consensus 17 ~~~vGr~~~~~~l~~~---l~~~~------~~~~~~v~I~G~~GiGKTtLa~~~~~~~--------~~~f~~~~~~~~-- 77 (693)
+++-|.|+..++|.+. |.... +.=++-|.++|+||.|||-||++++-+. ..+|+-. |+..
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm-~VGvGA 382 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEM-FVGVGA 382 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhh-hhcccH
Confidence 4667888766655554 43321 1126779999999999999999998532 1222211 1111
Q ss_pred -----c--cCCCCCeEEEEEecCCChhh-------------hhHHhcCCCcCC--CCceEEEEeCChHHHHHc-----CC
Q 037483 78 -----E--VGCNTKKVLLVIDDVVDIKQ-------------LEYLVGKREWFG--SGSRIIITSRDEHLLKTH-----GV 130 (693)
Q Consensus 78 -----~--~~~~~~~~LlvlDdv~~~~~-------------~~~l~~~~~~~~--~~~~iliTtR~~~~~~~~-----~~ 130 (693)
. ..-...+++|.+|.++.... +..++..++.+. .|..||-.|.-++.+... ..
T Consensus 383 rRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRF 462 (752)
T KOG0734|consen 383 RRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRF 462 (752)
T ss_pred HHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCcc
Confidence 0 02456789999998854321 333444444333 344344444444333221 22
Q ss_pred CceeeCCCCCHHHHHHHHHHhc
Q 037483 131 DELCEPNGLNYDEALQLLNTKA 152 (693)
Q Consensus 131 ~~~~~l~~L~~~ea~~l~~~~~ 152 (693)
+..+.|+.-+..--.++|..+.
T Consensus 463 D~~v~Vp~PDv~GR~eIL~~yl 484 (752)
T KOG0734|consen 463 DRHVTVPLPDVRGRTEILKLYL 484 (752)
T ss_pred ceeEecCCCCcccHHHHHHHHH
Confidence 4455666555555556665554
No 244
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.015 Score=63.16 Aligned_cols=131 Identities=18% Similarity=0.153 Sum_probs=77.1
Q ss_pred CCCccCC-CCccccchhHHHHHHHHhcC--------CC-CCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc
Q 037483 10 PVKSETL-KKLVRIDSCLEELRSLMDEG--------LN-DDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV 79 (693)
Q Consensus 10 ~~~~~~~-~~~vGr~~~~~~l~~~l~~~--------~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~ 79 (693)
|..|.+. +++=|.++-..+|.+-+.-. ++ ....-|.+||+||.|||-+|++|+.+.+-.| +.+..
T Consensus 664 PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~F-----lSVKG 738 (953)
T KOG0736|consen 664 PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNF-----LSVKG 738 (953)
T ss_pred CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeE-----EeecC
Confidence 3444444 56777888888888766441 11 0234589999999999999999987543332 33211
Q ss_pred ---------------------CCCCCeEEEEEecCCChhh-------------------hhHHhcCCCcCCCCceEEEEe
Q 037483 80 ---------------------GCNTKKVLLVIDDVVDIKQ-------------------LEYLVGKREWFGSGSRIIITS 119 (693)
Q Consensus 80 ---------------------~~~~~~~LlvlDdv~~~~~-------------------~~~l~~~~~~~~~~~~iliTt 119 (693)
....++|+|.+|.+++..- +.++.+.......+.-||-.|
T Consensus 739 PELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGAT 818 (953)
T KOG0736|consen 739 PELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGAT 818 (953)
T ss_pred HHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecC
Confidence 3567899999999865421 222333222223344556555
Q ss_pred CChHHHHH-----cCCCceeeCCCCCHHHHH
Q 037483 120 RDEHLLKT-----HGVDELCEPNGLNYDEAL 145 (693)
Q Consensus 120 R~~~~~~~-----~~~~~~~~l~~L~~~ea~ 145 (693)
-.+++... -..++.+.|+.=+.++..
T Consensus 819 NRPDLLDpALLRPGRFDKLvyvG~~~d~esk 849 (953)
T KOG0736|consen 819 NRPDLLDPALLRPGRFDKLVYVGPNEDAESK 849 (953)
T ss_pred CCccccChhhcCCCccceeEEecCCccHHHH
Confidence 55443322 233566677765555544
No 245
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.72 E-value=5.6e-05 Score=75.42 Aligned_cols=201 Identities=24% Similarity=0.265 Sum_probs=105.2
Q ss_pred CCcEEEcCCCCCcccc--hhhhcCccccceeccCCcC-cee--ecCCcCCCCCCCEEecCCCCCCccCCCCCCCCccccc
Q 037483 339 CLRTLELSGCSKLKRF--LEIVASMEDLSELYLDGTF-ITK--LPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLEN 413 (693)
Q Consensus 339 ~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~L~~~~-l~~--l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~ 413 (693)
.|+.|.+.+|...+.- -....+++++++|.+.++. ++. +-..-..+++|++|++..|...+.. .|+.
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~--------~Lk~ 210 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDV--------SLKY 210 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHH--------HHHH
Confidence 5777888887655432 3445678999999998884 431 1111256889999999987544332 1121
Q ss_pred ccccccCCCCccEEecCCC-cccc--CCCccccCCCCCEEEccCCCCCCCCCCcc------ccccccccCC-CCchhhhh
Q 037483 414 VSETLGQVEILEELDISGT-TIRE--PPSSIFAIKNLKKLSFSGCSGPPSSASWH------LHFPFNLMGK-SLYPVALM 483 (693)
Q Consensus 414 lp~~l~~l~~L~~L~l~~n-~i~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~------~~~~~~~~~~-~~~~~~~~ 483 (693)
+ ...+++|++|+++.| .|++ +-....++++++.+.+.||.-........ .....++..- .+... ..
T Consensus 211 l---a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~-~~ 286 (483)
T KOG4341|consen 211 L---AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDE-DL 286 (483)
T ss_pred H---HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccch-HH
Confidence 1 235677888888887 3332 22233456667777666764332210000 0000000000 00000 00
Q ss_pred hcccCCCCcCCeeeCCCCCC-CCCCCCccCCCCCCCCEEeCCCCC-CcccC-ccc-cCCCCCCEEecccccc
Q 037483 484 LFSLSGLCSLSKLDLSYCGL-GEGAIPNDIGNLCSLKELYLSKNN-FVTLP-ASI-SGLLNLKELELEDCAL 551 (693)
Q Consensus 484 ~~~l~~l~~L~~L~ls~n~l-~~~~~p~~l~~l~~L~~L~L~~n~-l~~lp-~~l-~~l~~L~~L~L~~n~~ 551 (693)
...-..+..|+.|+.+++.- ++..+-.-..+.++|+.|-++.|+ |+..- ..+ .+++.|+.+++..|-.
T Consensus 287 ~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~ 358 (483)
T KOG4341|consen 287 WLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGL 358 (483)
T ss_pred HHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccce
Confidence 01223456677777777643 111111123456777777777774 44221 112 4567777777777765
No 246
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.72 E-value=0.0063 Score=70.67 Aligned_cols=51 Identities=20% Similarity=0.337 Sum_probs=41.1
Q ss_pred CCCccccchhHHHHHHHHhcCC-----CC-CeEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 16 LKKLVRIDSCLEELRSLMDEGL-----ND-DVRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 16 ~~~~vGr~~~~~~l~~~l~~~~-----~~-~~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
...++|.+..++.+...+.... ++ ...++.+.|++|+|||++|+.+++.+.
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~ 620 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLF 620 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4679999999999999887521 11 246788999999999999999998653
No 247
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.71 E-value=0.008 Score=58.90 Aligned_cols=137 Identities=18% Similarity=0.149 Sum_probs=85.3
Q ss_pred CCCCccccchhHHHHHHHHhcC-CCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc--------------
Q 037483 15 TLKKLVRIDSCLEELRSLMDEG-LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV-------------- 79 (693)
Q Consensus 15 ~~~~~vGr~~~~~~l~~~l~~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~-------------- 79 (693)
+-..++|-.++..++.+++... -.+...-|.|.|+.|.|||+|......+ .+++.-...+....
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHH
Confidence 5568999999999999998662 2235667999999999999998776544 22332222222100
Q ss_pred --------------------------------CCCCCeEEEEEecCCChh----h--hhHHh-cCCCcCCCCceEEEEeC
Q 037483 80 --------------------------------GCNTKKVLLVIDDVVDIK----Q--LEYLV-GKREWFGSGSRIIITSR 120 (693)
Q Consensus 80 --------------------------------~~~~~~~LlvlDdv~~~~----~--~~~l~-~~~~~~~~~~~iliTtR 120 (693)
...+.++++|+|.++--. | +-.+. .......|=|.|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 134567999999875322 1 11121 11122356778889999
Q ss_pred ChH-------HHHHcCCCceeeCCCCCHHHHHHHHHHhc
Q 037483 121 DEH-------LLKTHGVDELCEPNGLNYDEALQLLNTKA 152 (693)
Q Consensus 121 ~~~-------~~~~~~~~~~~~l~~L~~~ea~~l~~~~~ 152 (693)
-.- |-.......++-.+.+.-++-.++++...
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 742 33333334466677777777777776655
No 248
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.0049 Score=65.00 Aligned_cols=113 Identities=18% Similarity=0.267 Sum_probs=72.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccccee-------EEEEcc---------cCCCCCeEEEEEecCCChhh------
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISHEFEGS-------SFLVDE---------VGCNTKKVLLVIDDVVDIKQ------ 98 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~-------~~~~~~---------~~~~~~~~LlvlDdv~~~~~------ 98 (693)
+.-|.+||++|.|||-||+++++.-...|-.+ -|+... ......+++|.+|.++....
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~ 624 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG 624 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC
Confidence 56699999999999999999999765554221 111110 02567899999999854311
Q ss_pred -------hhHHhcCCCcC--CCCceEEEEeCChHHHH-----HcCCCceeeCCCCCHHHHHHHHHHhcc
Q 037483 99 -------LEYLVGKREWF--GSGSRIIITSRDEHLLK-----THGVDELCEPNGLNYDEALQLLNTKAF 153 (693)
Q Consensus 99 -------~~~l~~~~~~~--~~~~~iliTtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~l~~~~~~ 153 (693)
+..|+..++.. ..|..||-.|-.+++.. --.-+...-|+.-+.+|-.++++..+-
T Consensus 625 s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 625 SSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITK 693 (802)
T ss_pred chhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhc
Confidence 23344333322 24666676665544322 122356777888899999999988873
No 249
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.70 E-value=0.064 Score=55.18 Aligned_cols=47 Identities=19% Similarity=0.352 Sum_probs=38.2
Q ss_pred cchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 22 IDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 22 r~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
|+.-.+.|.+.+...+.+...+|+|.|.=|+|||++.+.+.+.+.+.
T Consensus 1 ~~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred ChHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 44566778888877554578999999999999999999998877665
No 250
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.69 E-value=0.0075 Score=67.60 Aligned_cols=134 Identities=17% Similarity=0.193 Sum_probs=80.2
Q ss_pred CCccccchhHHHHHHHHhcCC---------CCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEcc------c--
Q 037483 17 KKLVRIDSCLEELRSLMDEGL---------NDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDE------V-- 79 (693)
Q Consensus 17 ~~~vGr~~~~~~l~~~l~~~~---------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~------~-- 79 (693)
.++.|.+...+++.+.+.... ..-.+-|.|+|++|.|||++|+.++.+..-.|- .+... .
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~---~is~~~~~~~~~g~ 228 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFF---TISGSDFVEMFVGV 228 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEE---EEehHHhHHhhhcc
Confidence 356677777777766553211 011345999999999999999999886544331 11110 0
Q ss_pred -----------CCCCCeEEEEEecCCChhh----------------hhHHhcCCCcC--CCCceEEEEeCChHHHHH---
Q 037483 80 -----------GCNTKKVLLVIDDVVDIKQ----------------LEYLVGKREWF--GSGSRIIITSRDEHLLKT--- 127 (693)
Q Consensus 80 -----------~~~~~~~LlvlDdv~~~~~----------------~~~l~~~~~~~--~~~~~iliTtR~~~~~~~--- 127 (693)
.....++++++|+++.... +..+......+ ..+..+|.||...+....
T Consensus 229 ~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~ 308 (644)
T PRK10733 229 GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALL 308 (644)
T ss_pred cHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHh
Confidence 1334678999999865411 12222222211 234556667776543221
Q ss_pred --cCCCceeeCCCCCHHHHHHHHHHhcc
Q 037483 128 --HGVDELCEPNGLNYDEALQLLNTKAF 153 (693)
Q Consensus 128 --~~~~~~~~l~~L~~~ea~~l~~~~~~ 153 (693)
...+..+.++..+.++-.+++..+..
T Consensus 309 RpgRfdr~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 309 RPGRFDRQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred CCcccceEEEcCCCCHHHHHHHHHHHhh
Confidence 12356788888898888888888763
No 251
>PRK08118 topology modulation protein; Reviewed
Probab=96.67 E-value=0.0014 Score=59.74 Aligned_cols=24 Identities=38% Similarity=0.565 Sum_probs=21.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
.|.|.|++|+||||||+++++...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998754
No 252
>PHA02244 ATPase-like protein
Probab=96.67 E-value=0.0038 Score=63.15 Aligned_cols=55 Identities=11% Similarity=0.089 Sum_probs=34.5
Q ss_pred ccCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 13 SETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 13 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
......++|....+......+..-.. ...-|.|+|++|+|||++|+++++.....
T Consensus 92 ~~~d~~~ig~sp~~~~~~~ri~r~l~-~~~PVLL~GppGtGKTtLA~aLA~~lg~p 146 (383)
T PHA02244 92 SGIDTTKIASNPTFHYETADIAKIVN-ANIPVFLKGGAGSGKNHIAEQIAEALDLD 146 (383)
T ss_pred hhCCCcccCCCHHHHHHHHHHHHHHh-cCCCEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 34445677766655433333322111 12237889999999999999999875433
No 253
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.65 E-value=0.043 Score=59.26 Aligned_cols=168 Identities=13% Similarity=0.132 Sum_probs=98.4
Q ss_pred CCCCccccchhHHHHHHHHhcC--CCCCeEEEEEEcCCCchHHHHHHHHHHHHh-----cccceeEEEEccc--------
Q 037483 15 TLKKLVRIDSCLEELRSLMDEG--LNDDVRMIGICGMGGLGKTTLVRAVYDLIS-----HEFEGSSFLVDEV-------- 79 (693)
Q Consensus 15 ~~~~~vGr~~~~~~l~~~l~~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~-----~~f~~~~~~~~~~-------- 79 (693)
.+..+-+||.+..+|...+..- ..+....+-|.|.+|.|||+.+..|.+.+. .+-+...|+....
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPRE 473 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHH
Confidence 5677889999999999988662 223456899999999999999999998543 1222222322200
Q ss_pred ------------------------------CCCCCeEEEEEecCCChhh--hhHHhcCCCcC-CCCceEEEEeCCh--H-
Q 037483 80 ------------------------------GCNTKKVLLVIDDVVDIKQ--LEYLVGKREWF-GSGSRIIITSRDE--H- 123 (693)
Q Consensus 80 ------------------------------~~~~~~~LlvlDdv~~~~~--~~~l~~~~~~~-~~~~~iliTtR~~--~- 123 (693)
....+.+++++|+++..-. -+.+...+.|- .++++++|-+-.. .
T Consensus 474 ~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdl 553 (767)
T KOG1514|consen 474 IYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDL 553 (767)
T ss_pred HHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccC
Confidence 1456789999999865432 22333334443 3677766644321 1
Q ss_pred --------HHHHcCCCceeeCCCCCHHHHHHHHHHhcccCCC-CchHHHHHHHHHHHHhCCCchhHHHH
Q 037483 124 --------LLKTHGVDELCEPNGLNYDEALQLLNTKAFKTHK-PLEECAKLSERVPQYAGGLPLALKVL 183 (693)
Q Consensus 124 --------~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~Plal~~~ 183 (693)
+...++ ...+...+-+.++-.++...+..+... .....+-.+++|+.-.|-.-.|+.+.
T Consensus 554 PEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic 621 (767)
T KOG1514|consen 554 PERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDIC 621 (767)
T ss_pred HHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHH
Confidence 112222 234566777888887877766533211 22223333444544444444444444
No 254
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.015 Score=62.52 Aligned_cols=142 Identities=18% Similarity=0.142 Sum_probs=77.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcc-cceeEEEEccc-------------------CCCCCeEEEEEecCCChh--
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISHE-FEGSSFLVDEV-------------------GCNTKKVLLVIDDVVDIK-- 97 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~-------------------~~~~~~~LlvlDdv~~~~-- 97 (693)
+..-|.|.|+.|+|||+||+++++.+... +-.+.++..+. +....+-++||||++-.-
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~ 509 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASA 509 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhcc
Confidence 35679999999999999999999987543 22233333321 255678999999995321
Q ss_pred ------hh----hHHhcCC-----CcCCCCce--EEEEeCChHHH-----HHcCCCceeeCCCCCHHHHHHHHHHhcccC
Q 037483 98 ------QL----EYLVGKR-----EWFGSGSR--IIITSRDEHLL-----KTHGVDELCEPNGLNYDEALQLLNTKAFKT 155 (693)
Q Consensus 98 ------~~----~~l~~~~-----~~~~~~~~--iliTtR~~~~~-----~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~ 155 (693)
|+ +.+...+ .....+.+ +|.|.....-. ...-...+..++.+..++-.++++...-.
T Consensus 510 s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~- 588 (952)
T KOG0735|consen 510 SSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSK- 588 (952)
T ss_pred CcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHh-
Confidence 11 1111111 01123444 34444432211 11123456788899888888887766522
Q ss_pred CCCchHHHHHHHHHHHHhCCC-chhHHHH
Q 037483 156 HKPLEECAKLSERVPQYAGGL-PLALKVL 183 (693)
Q Consensus 156 ~~~~~~~~~~~~~i~~~~~g~-Plal~~~ 183 (693)
........ ...-+..+|+|. |.-+.++
T Consensus 589 ~~~~~~~~-dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 589 NLSDITMD-DLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred hhhhhhhH-HHHHHHHhcCCccchhHHHH
Confidence 22211112 222377777774 3333333
No 255
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.60 E-value=0.0083 Score=59.48 Aligned_cols=38 Identities=26% Similarity=0.340 Sum_probs=27.3
Q ss_pred cchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHH
Q 037483 22 IDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVY 62 (693)
Q Consensus 22 r~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~ 62 (693)
|..+-.--.++|. ++++..|.+.|.+|.|||.||.+..
T Consensus 229 rn~eQ~~ALdlLl---d~dI~lV~L~G~AGtGKTlLALaAg 266 (436)
T COG1875 229 RNAEQRVALDLLL---DDDIDLVSLGGKAGTGKTLLALAAG 266 (436)
T ss_pred ccHHHHHHHHHhc---CCCCCeEEeeccCCccHhHHHHHHH
Confidence 4433333344444 3468999999999999999998764
No 256
>PRK04132 replication factor C small subunit; Provisional
Probab=96.59 E-value=0.087 Score=59.99 Aligned_cols=133 Identities=15% Similarity=0.090 Sum_probs=83.9
Q ss_pred Ec--CCCchHHHHHHHHHHHHh-ccccee-EEEEc-c-cC----------------CC-CCeEEEEEecCCChh--hhhH
Q 037483 47 CG--MGGLGKTTLVRAVYDLIS-HEFEGS-SFLVD-E-VG----------------CN-TKKVLLVIDDVVDIK--QLEY 101 (693)
Q Consensus 47 ~G--~~GiGKTtLa~~~~~~~~-~~f~~~-~~~~~-~-~~----------------~~-~~~~LlvlDdv~~~~--~~~~ 101 (693)
.| |.++||||+|.++++++- +.+... +-+.. . .+ .. .+.-++|+|+++... +...
T Consensus 570 ~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~AQnA 649 (846)
T PRK04132 570 GGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQA 649 (846)
T ss_pred cCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCHHHHHH
Confidence 36 778999999999998762 222211 12221 1 11 11 245799999998764 4666
Q ss_pred HhcCCCcCCCCceEEEEeCCh-HHHHH-cCCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchh
Q 037483 102 LVGKREWFGSGSRIIITSRDE-HLLKT-HGVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLA 179 (693)
Q Consensus 102 l~~~~~~~~~~~~iliTtR~~-~~~~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 179 (693)
|...+......+++|++|.+. .+... ......+.+.+++.++..+.+.+.+-...... ..+....|++.++|.+..
T Consensus 650 LLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i--~~e~L~~Ia~~s~GDlR~ 727 (846)
T PRK04132 650 LRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL--TEEGLQAILYIAEGDMRR 727 (846)
T ss_pred HHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 666665555677777766654 33322 23356899999999999888877653222111 133567899999998854
Q ss_pred HH
Q 037483 180 LK 181 (693)
Q Consensus 180 l~ 181 (693)
.-
T Consensus 728 AI 729 (846)
T PRK04132 728 AI 729 (846)
T ss_pred HH
Confidence 43
No 257
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.58 E-value=0.0025 Score=66.90 Aligned_cols=47 Identities=15% Similarity=0.077 Sum_probs=40.7
Q ss_pred CCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 15 TLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 15 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
....++||++.++.+...+..+.+ |.|.|++|+|||++|+.+.....
T Consensus 18 l~~~i~gre~vI~lll~aalag~h-----VLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 18 LEKGLYERSHAIRLCLLAALSGES-----VFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred HhhhccCcHHHHHHHHHHHccCCC-----EEEECCCChhHHHHHHHHHHHhc
Confidence 356899999999999988876544 99999999999999999998654
No 258
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.58 E-value=0.011 Score=55.49 Aligned_cols=93 Identities=25% Similarity=0.333 Sum_probs=53.4
Q ss_pred hHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc----------C--------------
Q 037483 25 CLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV----------G-------------- 80 (693)
Q Consensus 25 ~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~----------~-------------- 80 (693)
..+.+...+.. +-++++|.|.||.||||++..+.+.+...-..+++..... +
T Consensus 6 Q~~a~~~~l~~----~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~ 81 (196)
T PF13604_consen 6 QREAVRAILTS----GDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIP 81 (196)
T ss_dssp HHHHHHHHHHC----TCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEEC
T ss_pred HHHHHHHHHhc----CCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCC
Confidence 33444444443 3368899999999999999998876655432333333211 0
Q ss_pred --------CCCCeEEEEEecCCChh--hhhHHhcCCCcCCCCceEEEEeCChH
Q 037483 81 --------CNTKKVLLVIDDVVDIK--QLEYLVGKREWFGSGSRIIITSRDEH 123 (693)
Q Consensus 81 --------~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTtR~~~ 123 (693)
...++-++|+|++.... ++..+..... ..++++|+.-=..+
T Consensus 82 ~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~--~~~~klilvGD~~Q 132 (196)
T PF13604_consen 82 NGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAK--KSGAKLILVGDPNQ 132 (196)
T ss_dssp CEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS---T-T-EEEEEE-TTS
T ss_pred cccccccccCCcccEEEEecccccCHHHHHHHHHHHH--hcCCEEEEECCcch
Confidence 02345699999986543 4555554433 35778887665544
No 259
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.58 E-value=0.085 Score=50.46 Aligned_cols=184 Identities=15% Similarity=0.200 Sum_probs=107.5
Q ss_pred CCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhc------ccceeEEEEccc---------
Q 037483 15 TLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISH------EFEGSSFLVDEV--------- 79 (693)
Q Consensus 15 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~------~f~~~~~~~~~~--------- 79 (693)
.-+.+.++++...++.++... ++..-..++|+.|.||-|.+..+.+++-. +-+...|.....
T Consensus 11 sl~~l~~~~e~~~~Lksl~~~---~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvs 87 (351)
T KOG2035|consen 11 SLDELIYHEELANLLKSLSST---GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVS 87 (351)
T ss_pred hhhhcccHHHHHHHHHHhccc---CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEec
Confidence 345577888888888877662 24667899999999999999998876422 223333433311
Q ss_pred ------------C----------------------CCCCe-EEEEEecCCCh--hhhhHHhcCCCcCCCCceEEEEeCCh
Q 037483 80 ------------G----------------------CNTKK-VLLVIDDVVDI--KQLEYLVGKREWFGSGSRIIITSRDE 122 (693)
Q Consensus 80 ------------~----------------------~~~~~-~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTtR~~ 122 (693)
| ...+. -++|+-.+++. +.-..+.....-....+|+|+..-+.
T Consensus 88 S~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~ 167 (351)
T KOG2035|consen 88 SNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNST 167 (351)
T ss_pred ccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCc
Confidence 1 11122 24555555443 22233333333335678887755442
Q ss_pred H--HHHHcCCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHHhhhhc--C---------
Q 037483 123 H--LLKTHGVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVLGSFLN--G--------- 189 (693)
Q Consensus 123 ~--~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~--~--------- 189 (693)
. +..--...-.++++..+++|....++..+-...-..+ .+++.+|+++++|+-.-.-.+-...+ .
T Consensus 168 SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~~ 245 (351)
T KOG2035|consen 168 SRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQV 245 (351)
T ss_pred ccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhccccccccCCC
Confidence 1 1111122346799999999999999888743333222 56788999999987532222211111 1
Q ss_pred CChHHHHHHHHHhc
Q 037483 190 RSTDQWRSTLERLK 203 (693)
Q Consensus 190 ~~~~~w~~~l~~l~ 203 (693)
-...+|+-++.+..
T Consensus 246 i~~~dWe~~i~e~a 259 (351)
T KOG2035|consen 246 IPKPDWEIYIQEIA 259 (351)
T ss_pred CCCccHHHHHHHHH
Confidence 13457888877654
No 260
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.57 E-value=0.033 Score=61.46 Aligned_cols=51 Identities=12% Similarity=0.135 Sum_probs=41.6
Q ss_pred cCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 14 ETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
.....++|.+..+.++.+.+..... ...-|.|+|.+|+|||++|+.+.+.-
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~-~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVAR-SNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhC-cCCCEEEECCCCccHHHHHHHHHHhC
Confidence 3456899999999999988876443 34457899999999999999998753
No 261
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.51 E-value=0.0021 Score=69.07 Aligned_cols=56 Identities=29% Similarity=0.482 Sum_probs=39.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEE-Ecc-------------------cCCCCCeEEEEEecCCChh
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFL-VDE-------------------VGCNTKKVLLVIDDVVDIK 97 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~-~~~-------------------~~~~~~~~LlvlDdv~~~~ 97 (693)
..++..++|++|+||||||.-++++. .|..+-.= .++ .++.+++..+|+|.++...
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa--GYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA--GYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP 400 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc--CceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCc
Confidence 57999999999999999999998742 22211110 001 1356899999999997653
No 262
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.0075 Score=66.91 Aligned_cols=51 Identities=22% Similarity=0.341 Sum_probs=41.2
Q ss_pred CCCccccchhHHHHHHHHhcC------CCCCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 16 LKKLVRIDSCLEELRSLMDEG------LNDDVRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 16 ~~~~vGr~~~~~~l~~~l~~~------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
...++|.+..++.+.+.+... ++.........|+.|||||-||++++..+-
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lf 546 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALF 546 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhc
Confidence 368999999999999888652 222456788899999999999999998653
No 263
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.50 E-value=0.0031 Score=67.09 Aligned_cols=51 Identities=20% Similarity=0.429 Sum_probs=42.0
Q ss_pred CCccccchhHHHHHHHHhc---CCCCCeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 17 KKLVRIDSCLEELRSLMDE---GLNDDVRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 17 ~~~vGr~~~~~~l~~~l~~---~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
.+++|.++.++++.+.|.. +-+...+++.++|++|+|||+||+.+++.+.+
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 3689999999999998833 12335689999999999999999999986544
No 264
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.025 Score=52.93 Aligned_cols=130 Identities=18% Similarity=0.304 Sum_probs=80.4
Q ss_pred Ccc-ccchhHHHHHHHHhcCCC----------CCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc-------
Q 037483 18 KLV-RIDSCLEELRSLMDEGLN----------DDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV------- 79 (693)
Q Consensus 18 ~~v-Gr~~~~~~l~~~l~~~~~----------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~------- 79 (693)
+.| |-+..+.+|.+.+.-... .+++-|.++|++|.|||-||+++|+.- ...|+.+..
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-----~c~firvsgselvqk~ 221 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIRVSGSELVQKY 221 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-----ceEEEEechHHHHHHH
Confidence 344 467888888887754211 246789999999999999999998632 222232211
Q ss_pred --------------CCCCCeEEEEEecCCChhh----------------hhHHhcCCCcC--CCCceEEEEeCChHHHH-
Q 037483 80 --------------GCNTKKVLLVIDDVVDIKQ----------------LEYLVGKREWF--GSGSRIIITSRDEHLLK- 126 (693)
Q Consensus 80 --------------~~~~~~~LlvlDdv~~~~~----------------~~~l~~~~~~~--~~~~~iliTtR~~~~~~- 126 (693)
.....+-++.+|.+++... .-+++.+++.+ ...-+||..|..-+++.
T Consensus 222 igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~ 301 (404)
T KOG0728|consen 222 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDP 301 (404)
T ss_pred hhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccH
Confidence 1445677888888754321 12234444433 34567777666544332
Q ss_pred ----HcCCCceeeCCCCCHHHHHHHHHHhc
Q 037483 127 ----THGVDELCEPNGLNYDEALQLLNTKA 152 (693)
Q Consensus 127 ----~~~~~~~~~l~~L~~~ea~~l~~~~~ 152 (693)
.-..+.-++.++-+++.-.++++-+.
T Consensus 302 allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 302 ALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred hhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 22346677888888887777776554
No 265
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.49 E-value=0.048 Score=55.21 Aligned_cols=48 Identities=23% Similarity=0.090 Sum_probs=32.8
Q ss_pred eeeCCCCCHHHHHHHHHHhcccCCCCc-hHHHHHHHHHHHHhCCCchhH
Q 037483 133 LCEPNGLNYDEALQLLNTKAFKTHKPL-EECAKLSERVPQYAGGLPLAL 180 (693)
Q Consensus 133 ~~~l~~L~~~ea~~l~~~~~~~~~~~~-~~~~~~~~~i~~~~~g~Plal 180 (693)
.++|++++.+|+..++..+.-.+-... ...+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999988874332222 223334556666679999654
No 266
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.49 E-value=0.0036 Score=57.88 Aligned_cols=37 Identities=30% Similarity=0.548 Sum_probs=31.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEE
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLV 76 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 76 (693)
...+|++.|++|+||||+|+.+++.+...+....++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4569999999999999999999998877766665553
No 267
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.016 Score=63.44 Aligned_cols=138 Identities=17% Similarity=0.166 Sum_probs=85.3
Q ss_pred CCCccccchhHHHHHHHHhcC----------CCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEE-------Ecc
Q 037483 16 LKKLVRIDSCLEELRSLMDEG----------LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFL-------VDE 78 (693)
Q Consensus 16 ~~~~vGr~~~~~~l~~~l~~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~-------~~~ 78 (693)
-.+..|.+...+.+.+.+... .-...+.+.++|++|.|||.||++++......|-.+..- ...
T Consensus 241 ~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGes 320 (494)
T COG0464 241 LDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGES 320 (494)
T ss_pred eehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchH
Confidence 355666676666666654331 112466899999999999999999999765555433221 110
Q ss_pred c---------CCCCCeEEEEEecCCChhh-------------hhHHhcCCCcCC--CCceEEEEeCChHHHHH-----cC
Q 037483 79 V---------GCNTKKVLLVIDDVVDIKQ-------------LEYLVGKREWFG--SGSRIIITSRDEHLLKT-----HG 129 (693)
Q Consensus 79 ~---------~~~~~~~LlvlDdv~~~~~-------------~~~l~~~~~~~~--~~~~iliTtR~~~~~~~-----~~ 129 (693)
. ..+..++.+.+|.++.... ...+........ .+..||-||-....... ..
T Consensus 321 ek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gR 400 (494)
T COG0464 321 EKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGR 400 (494)
T ss_pred HHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCc
Confidence 0 1457889999999854321 222333332222 33344555554432221 13
Q ss_pred CCceeeCCCCCHHHHHHHHHHhcc
Q 037483 130 VDELCEPNGLNYDEALQLLNTKAF 153 (693)
Q Consensus 130 ~~~~~~l~~L~~~ea~~l~~~~~~ 153 (693)
.+..+.++.-+.++..+.|..+.-
T Consensus 401 fd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 401 FDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred cceEeecCCCCHHHHHHHHHHHhc
Confidence 366889999999999999999884
No 268
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.43 E-value=0.0089 Score=67.62 Aligned_cols=51 Identities=18% Similarity=0.213 Sum_probs=40.4
Q ss_pred CCCccccchhHHHHHHHHhcC------CCCCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 16 LKKLVRIDSCLEELRSLMDEG------LNDDVRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 16 ~~~~vGr~~~~~~l~~~l~~~------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
...++|.++.++.|.+.+... .+.....+.++|++|+|||.+|+.+++.+.
T Consensus 457 ~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 457 KMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred cceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999888642 111245789999999999999999998763
No 269
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.43 E-value=0.053 Score=55.46 Aligned_cols=45 Identities=20% Similarity=0.144 Sum_probs=36.5
Q ss_pred ccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 037483 19 LVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDL 64 (693)
Q Consensus 19 ~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 64 (693)
+||+...+.++.+.+...+. ...-|.|+|.+|+||+++|+.+.+.
T Consensus 1 liG~S~~m~~~~~~~~~~a~-~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP-LDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC-CCCCEEEECCCCChHHHHHHHHHHh
Confidence 57888888888888776544 3455899999999999999998764
No 270
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.42 E-value=0.0027 Score=55.20 Aligned_cols=22 Identities=41% Similarity=0.758 Sum_probs=20.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 037483 44 IGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 44 v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
|+|.|++|+||||+|+++.++.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999874
No 271
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.38 E-value=0.015 Score=67.32 Aligned_cols=50 Identities=20% Similarity=0.329 Sum_probs=39.5
Q ss_pred CCCccccchhHHHHHHHHhcC------CCCCeEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 16 LKKLVRIDSCLEELRSLMDEG------LNDDVRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 16 ~~~~vGr~~~~~~l~~~l~~~------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
...++|.++.++.+...+... .+.....+.++|++|+|||+||+.+++.+
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 467999999999998887531 11123567899999999999999999865
No 272
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.37 E-value=0.00012 Score=69.02 Aligned_cols=80 Identities=23% Similarity=0.157 Sum_probs=39.9
Q ss_pred CccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCeeeCCCCC
Q 037483 423 ILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCG 502 (693)
Q Consensus 423 ~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~ 502 (693)
+.+.|+..+|.+..+ ..+..++.|+.|.|+-|++.... .+..|++|+.|+|..|.
T Consensus 20 ~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~------------------------pl~rCtrLkElYLRkN~ 74 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLA------------------------PLQRCTRLKELYLRKNC 74 (388)
T ss_pred HhhhhcccCCCccHH-HHHHhcccceeEEeeccccccch------------------------hHHHHHHHHHHHHHhcc
Confidence 344555555555544 23345555556665555554332 34555556666666655
Q ss_pred CCCCCCCccCCCCCCCCEEeCCCCC
Q 037483 503 LGEGAIPNDIGNLCSLKELYLSKNN 527 (693)
Q Consensus 503 l~~~~~p~~l~~l~~L~~L~L~~n~ 527 (693)
|.+-.-..-+.++++|+.|-|..|.
T Consensus 75 I~sldEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 75 IESLDELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred cccHHHHHHHhcCchhhhHhhccCC
Confidence 5321111224455556666555553
No 273
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.36 E-value=0.007 Score=61.54 Aligned_cols=44 Identities=14% Similarity=0.002 Sum_probs=32.0
Q ss_pred hHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccc
Q 037483 25 CLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFE 70 (693)
Q Consensus 25 ~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 70 (693)
...++.+.+.... ..+.++|+|.+|+|||||++.+++.+....+
T Consensus 119 ~~~RvID~l~PiG--kGQR~LIvG~pGtGKTTLl~~la~~i~~~~~ 162 (380)
T PRK12608 119 LSMRVVDLVAPIG--KGQRGLIVAPPRAGKTVLLQQIAAAVAANHP 162 (380)
T ss_pred hhHhhhhheeecC--CCceEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 3345566655432 3456799999999999999999998766543
No 274
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.36 E-value=0.0088 Score=54.42 Aligned_cols=50 Identities=32% Similarity=0.446 Sum_probs=35.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhc-ccceeEEEEcccCCCCCeEEEEEecC
Q 037483 44 IGICGMGGLGKTTLVRAVYDLISH-EFEGSSFLVDEVGCNTKKVLLVIDDV 93 (693)
Q Consensus 44 v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~LlvlDdv 93 (693)
|.|+|.+|+|||||++.+++.++. .+...=|++.+....++|.-+-+-|+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~~~~v~Gf~t~evr~~g~r~GF~iv~l 52 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKKGLPVGGFYTEEVRENGRRIGFDIVDL 52 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHTCGGEEEEEEEEEETTSSEEEEEEEET
T ss_pred EEEECcCCCCHHHHHHHHHHHhhccCCccceEEeecccCCCceEEEEEEEC
Confidence 789999999999999999998865 35555566655555666655444455
No 275
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.31 E-value=0.07 Score=56.05 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=33.6
Q ss_pred cchhHHHHHHHHhc----CCCCCeEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 22 IDSCLEELRSLMDE----GLNDDVRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 22 r~~~~~~l~~~l~~----~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
-..-++++..||.. ..+-+.+++.|+|++|+||||-++.++..+
T Consensus 87 HkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 87 HKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred hHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 34456788888871 122257899999999999999999998753
No 276
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.06 Score=55.39 Aligned_cols=136 Identities=16% Similarity=0.148 Sum_probs=75.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEc--cc----------CCCCCeEEEEEecCCChhh----------
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVD--EV----------GCNTKKVLLVIDDVVDIKQ---------- 98 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~--~~----------~~~~~~~LlvlDdv~~~~~---------- 98 (693)
.|--.++|+||.|||+++.++|+.+ ++-++... +. .....+-+||+.|++..-+
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L----~ydIydLeLt~v~~n~dLr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~ 310 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYL----NYDIYDLELTEVKLDSDLRHLLLATPNKSILLIEDIDCSFDLRERRKKKKE 310 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhc----CCceEEeeeccccCcHHHHHHHHhCCCCcEEEEeecccccccccccccccc
Confidence 4678999999999999999999854 23333322 11 2455677888888854311
Q ss_pred ----------hhHHhcCCCc---CCCCceEE-EEeCChHHH-----HHcCCCceeeCCCCCHHHHHHHHHHhcccCCCCc
Q 037483 99 ----------LEYLVGKREW---FGSGSRII-ITSRDEHLL-----KTHGVDELCEPNGLNYDEALQLLNTKAFKTHKPL 159 (693)
Q Consensus 99 ----------~~~l~~~~~~---~~~~~~il-iTtR~~~~~-----~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~ 159 (693)
+.-|+..++. .+.+-||| .||-..+-+ ..-..+..+.+.-=+.+.-..|+..+.....
T Consensus 311 ~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--- 387 (457)
T KOG0743|consen 311 NFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--- 387 (457)
T ss_pred cccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC---
Confidence 1112222221 11233554 466654322 2112344566777788888888888874332
Q ss_pred hHHHHHHHHHHHHhCCCchhHHHHhh
Q 037483 160 EECAKLSERVPQYAGGLPLALKVLGS 185 (693)
Q Consensus 160 ~~~~~~~~~i~~~~~g~Plal~~~~~ 185 (693)
...+..+|.+...|.-+.=..++.
T Consensus 388 --~h~L~~eie~l~~~~~~tPA~V~e 411 (457)
T KOG0743|consen 388 --DHRLFDEIERLIEETEVTPAQVAE 411 (457)
T ss_pred --CcchhHHHHHHhhcCccCHHHHHH
Confidence 123344454444444333334433
No 277
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.26 E-value=0.0055 Score=57.98 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=27.2
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhcccc
Q 037483 39 DDVRMIGICGMGGLGKTTLVRAVYDLISHEFE 70 (693)
Q Consensus 39 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 70 (693)
.++.+|.++||+|.||||..+.++..+..++.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ 48 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKT 48 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccC
Confidence 46788999999999999999999887766654
No 278
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.23 E-value=0.019 Score=54.15 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=23.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
.+|.|.|+.|.||||++.++...+...
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~ 28 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKN 28 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 478999999999999999988766543
No 279
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.22 E-value=0.013 Score=55.98 Aligned_cols=43 Identities=28% Similarity=0.352 Sum_probs=31.3
Q ss_pred hHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 25 CLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 25 ~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
+..++.+.+....+ +..+|+|+|+||+|||||+.++...++++
T Consensus 14 ~~~~ll~~l~~~~g-~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 14 EARELLKRLYPHTG-RAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHHHHGGGTT--SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcC-CceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 44455555554433 67899999999999999999999877654
No 280
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.21 E-value=4.8e-05 Score=80.95 Aligned_cols=185 Identities=26% Similarity=0.308 Sum_probs=108.1
Q ss_pred CcEEEcCCCCCccc----chhhhcCccccceeccCCcCcee-----ecCCcCCC-CCCCEEecCCCCCCccCCCCCCCCc
Q 037483 340 LRTLELSGCSKLKR----FLEIVASMEDLSELYLDGTFITK-----LPLSIELL-TGLELLNLNDCKNLLRLPSSIDGCF 409 (693)
Q Consensus 340 L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~~~l~~-----l~~~~~~l-~~L~~L~L~~~~~~~~lp~~~~~~~ 409 (693)
+..|.|.+|.+... +...+...++|..|++++|.+.. +-..+... ..|++|++..|.....
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~--------- 159 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSE--------- 159 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhccccccc---------
Confidence 45555555544332 22344556667777777776651 11222222 4566666666644332
Q ss_pred ccccccccccCCCCccEEecCCCccccC-----CCcc----ccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchh
Q 037483 410 KLENVSETLGQVEILEELDISGTTIREP-----PSSI----FAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPV 480 (693)
Q Consensus 410 ~L~~lp~~l~~l~~L~~L~l~~n~i~~l-----p~~~----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (693)
....+.+.+.....++.++++.|.+... +..+ ....++++|++++|.++.. .+
T Consensus 160 g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~------------------~c 221 (478)
T KOG4308|consen 160 GAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSS------------------SC 221 (478)
T ss_pred chHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChH------------------HH
Confidence 1123344455567777778877766421 2233 3467888888888876633 22
Q ss_pred hhhhcccCCCCc-CCeeeCCCCCCCCCC---CCccCCCC-CCCCEEeCCCCCCc-----ccCccccCCCCCCEEeccccc
Q 037483 481 ALMLFSLSGLCS-LSKLDLSYCGLGEGA---IPNDIGNL-CSLKELYLSKNNFV-----TLPASISGLLNLKELELEDCA 550 (693)
Q Consensus 481 ~~~~~~l~~l~~-L~~L~ls~n~l~~~~---~p~~l~~l-~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~L~~n~ 550 (693)
......+...++ +..|++.+|.+.+.. ....+..+ ..++.++++.|.|+ .+...+..++.++.|.+++|+
T Consensus 222 ~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 222 ALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred HHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence 223334555555 677888888874321 12234444 56788888888887 355566777888888888888
Q ss_pred c
Q 037483 551 L 551 (693)
Q Consensus 551 ~ 551 (693)
+
T Consensus 302 l 302 (478)
T KOG4308|consen 302 L 302 (478)
T ss_pred c
Confidence 7
No 281
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.21 E-value=0.0044 Score=58.32 Aligned_cols=26 Identities=38% Similarity=0.714 Sum_probs=23.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
+|+|.|.+|+||||+|++++..+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999987643
No 282
>PRK07261 topology modulation protein; Provisional
Probab=96.20 E-value=0.0038 Score=57.24 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
.|.|+|++|+||||||+++++..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998754
No 283
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.19 E-value=0.77 Score=46.03 Aligned_cols=124 Identities=11% Similarity=0.107 Sum_probs=81.7
Q ss_pred HHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHH--------hcc-cc-eeEEEE--cc-c-------------
Q 037483 26 LEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLI--------SHE-FE-GSSFLV--DE-V------------- 79 (693)
Q Consensus 26 ~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~--------~~~-f~-~~~~~~--~~-~------------- 79 (693)
++.+...+..+ .-.++..++|..|+||+++|.++++.+ ... .+ ...++. .. .
T Consensus 5 ~~~l~~~i~~~--~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~ 82 (299)
T PRK07132 5 IKFLDNSATQN--KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLY 82 (299)
T ss_pred HHHHHHHHHhC--CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhc
Confidence 44555555442 246788899999999999999999876 111 12 233333 11 1
Q ss_pred --CCC-CCeEEEEEecCCChhh--hhHHhcCCCcCCCCceEEEEeCC-hHHHHH-cCCCceeeCCCCCHHHHHHHHHHh
Q 037483 80 --GCN-TKKVLLVIDDVVDIKQ--LEYLVGKREWFGSGSRIIITSRD-EHLLKT-HGVDELCEPNGLNYDEALQLLNTK 151 (693)
Q Consensus 80 --~~~-~~~~LlvlDdv~~~~~--~~~l~~~~~~~~~~~~iliTtR~-~~~~~~-~~~~~~~~l~~L~~~ea~~l~~~~ 151 (693)
... +++-++|+||++.... ...+...+...++.+.+|++|.+ ..+... ......+++.++++++..+.+...
T Consensus 83 ~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~ 161 (299)
T PRK07132 83 FSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK 161 (299)
T ss_pred cCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc
Confidence 112 5778889999876643 55666666665677777765544 444433 344678999999999999887654
No 284
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.18 E-value=0.00022 Score=67.42 Aligned_cols=79 Identities=20% Similarity=0.165 Sum_probs=40.9
Q ss_pred cccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCcccccccccccCCCCccEEecCCCccccC--CC
Q 037483 362 EDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLENVSETLGQVEILEELDISGTTIREP--PS 439 (693)
Q Consensus 362 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~l--p~ 439 (693)
.+.+.|+.-||.++.+. ...+++.|++|.|+-|++..-- .+..+++|++|+|..|.|..+ ..
T Consensus 19 ~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~---------------pl~rCtrLkElYLRkN~I~sldEL~ 82 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLA---------------PLQRCTRLKELYLRKNCIESLDELE 82 (388)
T ss_pred HHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccch---------------hHHHHHHHHHHHHHhcccccHHHHH
Confidence 34444555555554432 1334555555555555322111 134455666666666666655 23
Q ss_pred ccccCCCCCEEEccCCC
Q 037483 440 SIFAIKNLKKLSFSGCS 456 (693)
Q Consensus 440 ~~~~l~~L~~L~l~~~~ 456 (693)
.+.++++|+.|.|..|.
T Consensus 83 YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 83 YLKNLPSLRTLWLDENP 99 (388)
T ss_pred HHhcCchhhhHhhccCC
Confidence 45667777777776654
No 285
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.18 E-value=0.038 Score=56.50 Aligned_cols=28 Identities=29% Similarity=0.370 Sum_probs=24.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
+.++|+|+|++|+||||++..++..+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~ 267 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHG 267 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4689999999999999999999876543
No 286
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.15 E-value=0.11 Score=59.17 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=39.7
Q ss_pred CCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 16 LKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 16 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
-..++|+...+.++.+.+...+. ...-|.|+|.+|+|||++|+.+.+.-
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~-~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQ-SDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhC-CCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 35799999999998877765433 34569999999999999999998743
No 287
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.12 E-value=0.005 Score=46.63 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
+|+|.|.+|+||||+|+++.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 288
>PRK04040 adenylate kinase; Provisional
Probab=96.11 E-value=0.0061 Score=56.71 Aligned_cols=26 Identities=23% Similarity=0.580 Sum_probs=23.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
..+|+|+|++|+||||+++.+++++.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 36899999999999999999998874
No 289
>PTZ00301 uridine kinase; Provisional
Probab=96.10 E-value=0.0058 Score=57.80 Aligned_cols=29 Identities=28% Similarity=0.485 Sum_probs=25.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccc
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISHEF 69 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 69 (693)
..+|+|.|.+|+||||||+.+.+++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 47899999999999999999998876544
No 290
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.08 E-value=0.0099 Score=57.56 Aligned_cols=30 Identities=30% Similarity=0.543 Sum_probs=26.5
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 39 DDVRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 39 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
+...+|+|.|+.|.|||||++.++..++..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 468999999999999999999999877654
No 291
>PRK06762 hypothetical protein; Provisional
Probab=96.08 E-value=0.0057 Score=55.93 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
+.+|+|.|++|+||||+|+++++.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 292
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.07 E-value=0.023 Score=53.60 Aligned_cols=155 Identities=16% Similarity=0.186 Sum_probs=90.0
Q ss_pred CCccccchhHHH---HHHHHhcCCC---CCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEc-------------
Q 037483 17 KKLVRIDSCLEE---LRSLMDEGLN---DDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVD------------- 77 (693)
Q Consensus 17 ~~~vGr~~~~~~---l~~~l~~~~~---~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~------------- 77 (693)
+++||.++...+ |.+.|..... =.++-|..+|++|.|||.+|+++++..+--|- .+-.
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l---~vkat~liGehVGdgar 197 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLL---LVKATELIGEHVGDGAR 197 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceE---EechHHHHHHHhhhHHH
Confidence 578898865542 4455543211 14789999999999999999999875432211 1111
Q ss_pred ------ccCCCCCeEEEEEecCCChh--------------hhhHHhcCCCcC--CCCceEEEEeCChHHHHH---cCCCc
Q 037483 78 ------EVGCNTKKVLLVIDDVVDIK--------------QLEYLVGKREWF--GSGSRIIITSRDEHLLKT---HGVDE 132 (693)
Q Consensus 78 ------~~~~~~~~~LlvlDdv~~~~--------------~~~~l~~~~~~~--~~~~~iliTtR~~~~~~~---~~~~~ 132 (693)
+...+..++++.+|.++... ....++..++.. +.|..-|..|....++.. ....+
T Consensus 198 ~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEe 277 (368)
T COG1223 198 RIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEE 277 (368)
T ss_pred HHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhh
Confidence 00255678999999875431 133344433322 346555666665544332 12244
Q ss_pred eeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCc
Q 037483 133 LCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLP 177 (693)
Q Consensus 133 ~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 177 (693)
.++..--+++|-.+++..++-.-..+-+ ...+.++.+++|+.
T Consensus 278 EIEF~LP~~eEr~~ile~y~k~~Plpv~---~~~~~~~~~t~g~S 319 (368)
T COG1223 278 EIEFKLPNDEERLEILEYYAKKFPLPVD---ADLRYLAAKTKGMS 319 (368)
T ss_pred eeeeeCCChHHHHHHHHHHHHhCCCccc---cCHHHHHHHhCCCC
Confidence 5677777889999999888722111211 11445666666653
No 293
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.06 Score=50.74 Aligned_cols=141 Identities=20% Similarity=0.253 Sum_probs=82.2
Q ss_pred CccCCCCccccchhHHHHHHHHhcCC----------CCCeEEEEEEcCCCchHHHHHHHHHHHHhcccce-------eEE
Q 037483 12 KSETLKKLVRIDSCLEELRSLMDEGL----------NDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEG-------SSF 74 (693)
Q Consensus 12 ~~~~~~~~vGr~~~~~~l~~~l~~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~-------~~~ 74 (693)
|...-.++-|-+..+++|.+.+--.- -..++-|..||++|.|||-+|++.+.+-...|-. ..|
T Consensus 166 PtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMf 245 (424)
T KOG0652|consen 166 PTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF 245 (424)
T ss_pred CcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhh
Confidence 33444678889999999988763210 1236779999999999999999988754433311 112
Q ss_pred EEc-------cc--CCCCCeEEEEEecCCChh--------------h--hhHHhcCCCcCCC--CceEEEEeCChH----
Q 037483 75 LVD-------EV--GCNTKKVLLVIDDVVDIK--------------Q--LEYLVGKREWFGS--GSRIIITSRDEH---- 123 (693)
Q Consensus 75 ~~~-------~~--~~~~~~~LlvlDdv~~~~--------------~--~~~l~~~~~~~~~--~~~iliTtR~~~---- 123 (693)
+.+ .+ .-...+.+|.+|.++... | .-+++.++..+++ ..+||..|..-.
T Consensus 246 IGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDP 325 (424)
T KOG0652|consen 246 IGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDP 325 (424)
T ss_pred hcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCH
Confidence 222 11 245577888899774221 1 2234455554444 456666665433
Q ss_pred -HHHHcCCCceeeCCCCCHHHHHHHHHHhc
Q 037483 124 -LLKTHGVDELCEPNGLNYDEALQLLNTKA 152 (693)
Q Consensus 124 -~~~~~~~~~~~~l~~L~~~ea~~l~~~~~ 152 (693)
+...-.-+.-++.+.-+++.-..++.-+.
T Consensus 326 ALlRSGRLDRKIEfP~Pne~aRarIlQIHs 355 (424)
T KOG0652|consen 326 ALLRSGRLDRKIEFPHPNEEARARILQIHS 355 (424)
T ss_pred HHhhcccccccccCCCCChHHHHHHHHHhh
Confidence 33333335566776556555555555444
No 294
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.04 E-value=0.018 Score=51.89 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=31.9
Q ss_pred CCeEEEEEe----cCCChhhhhHHhcCCCcCCCCceEEEEeCChHHHHHcCC
Q 037483 83 TKKVLLVID----DVVDIKQLEYLVGKREWFGSGSRIIITSRDEHLLKTHGV 130 (693)
Q Consensus 83 ~~~~LlvlD----dv~~~~~~~~l~~~~~~~~~~~~iliTtR~~~~~~~~~~ 130 (693)
+++-+++-| |++....|+-+.-.-.....|..|+++|-+.++...+..
T Consensus 154 ~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~ 205 (223)
T COG2884 154 NQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRH 205 (223)
T ss_pred cCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccC
Confidence 367788888 455555555443322222579999999999988877643
No 295
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=96.03 E-value=0.62 Score=46.33 Aligned_cols=121 Identities=16% Similarity=0.193 Sum_probs=77.1
Q ss_pred hHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHH---------------------hcccceeEEEEccc----
Q 037483 25 CLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLI---------------------SHEFEGSSFLVDEV---- 79 (693)
Q Consensus 25 ~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~---------------------~~~f~~~~~~~~~~---- 79 (693)
.++.+...+..+. -.+...++| |+||+++|..++..+ ...++...|+..+.
T Consensus 10 ~~~~L~~~~~~~r--l~hAyLf~G--~~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~ 85 (290)
T PRK07276 10 VFQRFQTILEQDR--LNHAYLFSG--DFASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIK 85 (290)
T ss_pred HHHHHHHHHHcCC--cceeeeeeC--CccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCC
Confidence 3455555555432 356778888 589999999988643 12355666665421
Q ss_pred --------------CCCCCeEEEEEecCCChh--hhhHHhcCCCcCCCCceEEEEeCCh-HHHHHc-CCCceeeCCCCCH
Q 037483 80 --------------GCNTKKVLLVIDDVVDIK--QLEYLVGKREWFGSGSRIIITSRDE-HLLKTH-GVDELCEPNGLNY 141 (693)
Q Consensus 80 --------------~~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTtR~~-~~~~~~-~~~~~~~l~~L~~ 141 (693)
...+++-++|+||++... ....+...+..-++++.+|++|.+. .+.... .....+.+.. +.
T Consensus 86 idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~ 164 (290)
T PRK07276 86 TDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NE 164 (290)
T ss_pred HHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cH
Confidence 245667789999998764 4666777776666777777777654 344333 2345677766 66
Q ss_pred HHHHHHHHH
Q 037483 142 DEALQLLNT 150 (693)
Q Consensus 142 ~ea~~l~~~ 150 (693)
++..+++..
T Consensus 165 ~~~~~~L~~ 173 (290)
T PRK07276 165 AYLIQLLEQ 173 (290)
T ss_pred HHHHHHHHH
Confidence 666676653
No 296
>PRK03839 putative kinase; Provisional
Probab=96.01 E-value=0.0059 Score=56.69 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=21.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
.|.|.|++|+||||+|+.++++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998763
No 297
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.018 Score=58.32 Aligned_cols=52 Identities=29% Similarity=0.356 Sum_probs=39.6
Q ss_pred HHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc
Q 037483 26 LEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV 79 (693)
Q Consensus 26 ~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~ 79 (693)
+.++...|-.+-- ...+|.|-|-||||||||..+++.++..+. .+.|+..+.
T Consensus 79 ~~EldRVLGGG~V-~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEE 130 (456)
T COG1066 79 IEELDRVLGGGLV-PGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEE 130 (456)
T ss_pred hHHHHhhhcCCcc-cccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCc
Confidence 4455555543222 357899999999999999999999998776 788888754
No 298
>PRK08233 hypothetical protein; Provisional
Probab=96.00 E-value=0.0057 Score=56.92 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
..+|+|.|.+|+||||+|..++..+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4789999999999999999998865
No 299
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.99 E-value=0.0055 Score=60.36 Aligned_cols=57 Identities=23% Similarity=0.367 Sum_probs=31.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc--------------------------CCCCCeEEEEEecCCC
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV--------------------------GCNTKKVLLVIDDVVD 95 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~--------------------------~~~~~~~LlvlDdv~~ 95 (693)
..|.|+|.||+||||+|+++.+.+.+.-..+.++.++. ..-.+..++|+||..-
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nY 81 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNY 81 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCch
Confidence 46899999999999999999987655323333444311 0123457889999876
Q ss_pred hhh
Q 037483 96 IKQ 98 (693)
Q Consensus 96 ~~~ 98 (693)
...
T Consensus 82 iKg 84 (270)
T PF08433_consen 82 IKG 84 (270)
T ss_dssp SHH
T ss_pred HHH
Confidence 554
No 300
>PRK04296 thymidine kinase; Provisional
Probab=95.99 E-value=0.027 Score=52.66 Aligned_cols=79 Identities=18% Similarity=0.078 Sum_probs=50.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEc--c--c---------C--------------------CCCCeEEE
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVD--E--V---------G--------------------CNTKKVLL 88 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~--~--~---------~--------------------~~~~~~Ll 88 (693)
.++.|+|.+|.||||+|..++.+...+...+.++.. . . + ..++.-++
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvv 82 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCV 82 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEE
Confidence 578999999999999999998876544333333311 0 0 1 01133589
Q ss_pred EEecCCCh--hhhhHHhcCCCcCCCCceEEEEeCCh
Q 037483 89 VIDDVVDI--KQLEYLVGKREWFGSGSRIIITSRDE 122 (693)
Q Consensus 89 vlDdv~~~--~~~~~l~~~~~~~~~~~~iliTtR~~ 122 (693)
|+|.+.-. +++.++...+. ..|..|++|.++.
T Consensus 83 iIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~ 116 (190)
T PRK04296 83 LIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDT 116 (190)
T ss_pred EEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCc
Confidence 99998643 33444443322 4688899999884
No 301
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.99 E-value=0.0094 Score=55.59 Aligned_cols=30 Identities=37% Similarity=0.612 Sum_probs=26.6
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 39 DDVRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 39 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
+.+.+|+|.|.+|.||||+|+.+++.+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 367899999999999999999999987654
No 302
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.02 Score=53.96 Aligned_cols=73 Identities=22% Similarity=0.276 Sum_probs=52.7
Q ss_pred CCccccchhHHHHHHHHhcC----------CCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEc---cc----
Q 037483 17 KKLVRIDSCLEELRSLMDEG----------LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVD---EV---- 79 (693)
Q Consensus 17 ~~~vGr~~~~~~l~~~l~~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~---~~---- 79 (693)
.++-|-.+++++|.+..... .-+.++-|.++|++|.|||-+|++++++-.. +|+.+ +.
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtda-----cfirvigselvqky 251 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDA-----CFIRVIGSELVQKY 251 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCc-----eEEeehhHHHHHHH
Confidence 46678889999998876542 1124677999999999999999999986433 33333 10
Q ss_pred --------------CCCCCeEEEEEecCC
Q 037483 80 --------------GCNTKKVLLVIDDVV 94 (693)
Q Consensus 80 --------------~~~~~~~LlvlDdv~ 94 (693)
....|.+++.+|.++
T Consensus 252 vgegarmvrelf~martkkaciiffdeid 280 (435)
T KOG0729|consen 252 VGEGARMVRELFEMARTKKACIIFFDEID 280 (435)
T ss_pred hhhhHHHHHHHHHHhcccceEEEEeeccc
Confidence 256677899999874
No 303
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=95.97 E-value=0.0081 Score=57.46 Aligned_cols=27 Identities=33% Similarity=0.572 Sum_probs=23.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
|+|+|.|-||+||||++..++..+++.
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~~ 27 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAEM 27 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHHC
Confidence 468899999999999999998877653
No 304
>PRK06547 hypothetical protein; Provisional
Probab=95.96 E-value=0.0096 Score=54.44 Aligned_cols=27 Identities=33% Similarity=0.309 Sum_probs=24.2
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 39 DDVRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 39 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
+...+|+|.|++|+||||+|+.+++..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998863
No 305
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.95 E-value=0.0064 Score=53.70 Aligned_cols=22 Identities=41% Similarity=0.593 Sum_probs=20.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 037483 44 IGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 44 v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
|.|+|++|+|||+||+++++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999877
No 306
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.94 E-value=0.017 Score=55.88 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=35.5
Q ss_pred HHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEcc
Q 037483 28 ELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDE 78 (693)
Q Consensus 28 ~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~ 78 (693)
.|.++|..+-. ...++.|+|.+|+|||++|.+++.........++|+..+
T Consensus 11 ~lD~~l~GGi~-~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 11 MLDELLGGGFE-RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred HHHHHhcCCCC-CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 34455543322 468999999999999999999998765554556666543
No 307
>PRK05439 pantothenate kinase; Provisional
Probab=95.93 E-value=0.012 Score=58.78 Aligned_cols=31 Identities=32% Similarity=0.390 Sum_probs=26.2
Q ss_pred CCCCeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 37 LNDDVRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 37 ~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
..+.+.+|+|.|.+|+||||+|+.+...+..
T Consensus 82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3446889999999999999999999886643
No 308
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.92 E-value=0.012 Score=50.79 Aligned_cols=41 Identities=22% Similarity=0.298 Sum_probs=30.5
Q ss_pred hhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 24 SCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 24 ~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
++.+++.+.+...-. ...+|.+.|.-|.||||+++.+++.+
T Consensus 6 ~~t~~l~~~l~~~l~-~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPLD-FGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhCC-CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 445566666654322 34689999999999999999999864
No 309
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.91 E-value=0.007 Score=53.74 Aligned_cols=23 Identities=35% Similarity=0.644 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
+|.+.|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 58899999999999999998644
No 310
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.90 E-value=0.0079 Score=57.41 Aligned_cols=26 Identities=38% Similarity=0.675 Sum_probs=24.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
+..+|+|.|.+|+||||||+.++..+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999999876
No 311
>PRK00625 shikimate kinase; Provisional
Probab=95.90 E-value=0.007 Score=55.37 Aligned_cols=24 Identities=33% Similarity=0.629 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
.|.|+||+|+||||+++.++++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999988763
No 312
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.89 E-value=0.014 Score=55.71 Aligned_cols=39 Identities=18% Similarity=0.161 Sum_probs=31.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEcc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDE 78 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~ 78 (693)
...++.|+|++|+|||+++.+++.........++|+..+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 468999999999999999999988765555566776644
No 313
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.88 E-value=0.02 Score=55.08 Aligned_cols=49 Identities=16% Similarity=0.234 Sum_probs=33.8
Q ss_pred HHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEE
Q 037483 27 EELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLV 76 (693)
Q Consensus 27 ~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 76 (693)
..|.+++..+-. ...++.|+|.+|+|||++|.+++.....+-..++|+.
T Consensus 6 ~~LD~~l~GGi~-~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 6 KGLDELLGGGVE-RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hHHHHHhcCCcc-CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 345555543222 4689999999999999999999987654433444443
No 314
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.87 E-value=0.21 Score=49.49 Aligned_cols=113 Identities=12% Similarity=-0.013 Sum_probs=72.7
Q ss_pred hHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHh-------------cccceeEEEEccc------------
Q 037483 25 CLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLIS-------------HEFEGSSFLVDEV------------ 79 (693)
Q Consensus 25 ~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~-------------~~f~~~~~~~~~~------------ 79 (693)
..++|...+..+. -.+...++|+.|+||+++|.++++.+- ...+...++..+.
T Consensus 5 ~~~~L~~~i~~~r--l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~ 82 (290)
T PRK05917 5 AWEALIQRVRDQK--VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRA 82 (290)
T ss_pred HHHHHHHHHHcCC--cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHH
Confidence 3456666666532 367899999999999999999987542 2245555553321
Q ss_pred --------CCCCCeEEEEEecCCChh--hhhHHhcCCCcCCCCceEEEEeCC-hHHHHH-cCCCceeeCCCC
Q 037483 80 --------GCNTKKVLLVIDDVVDIK--QLEYLVGKREWFGSGSRIIITSRD-EHLLKT-HGVDELCEPNGL 139 (693)
Q Consensus 80 --------~~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTtR~-~~~~~~-~~~~~~~~l~~L 139 (693)
...++.-++|+|+++... ....+...+....+++.+|++|.+ ..+... ......+.+.++
T Consensus 83 l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 83 IKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPME 154 (290)
T ss_pred HHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccch
Confidence 144666788999997653 466677766665667776666665 444433 233456666654
No 315
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.07 Score=57.70 Aligned_cols=154 Identities=20% Similarity=0.146 Sum_probs=88.0
Q ss_pred CCccccchhHHHHHHHHhcCCC----------CCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc-------
Q 037483 17 KKLVRIDSCLEELRSLMDEGLN----------DDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV------- 79 (693)
Q Consensus 17 ~~~vGr~~~~~~l~~~l~~~~~----------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~------- 79 (693)
.++-|..+..+.+++.+..... .-..-|.++|++|.|||.||.+++....-+ |+....
T Consensus 667 ~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~-----fisvKGPElL~Ky 741 (952)
T KOG0735|consen 667 EDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLR-----FISVKGPELLSKY 741 (952)
T ss_pred eecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCee-----EEEecCHHHHHHH
Confidence 4566777777777777765431 123458999999999999999998743222 333311
Q ss_pred --------------CCCCCeEEEEEecCCChhh-------------hhHHhcCCCc--CCCCceEEE-EeCChH----HH
Q 037483 80 --------------GCNTKKVLLVIDDVVDIKQ-------------LEYLVGKREW--FGSGSRIII-TSRDEH----LL 125 (693)
Q Consensus 80 --------------~~~~~~~LlvlDdv~~~~~-------------~~~l~~~~~~--~~~~~~ili-TtR~~~----~~ 125 (693)
....++|++.+|.+++... ...++..++. +-.|..|+. |||..- ++
T Consensus 742 IGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALL 821 (952)
T KOG0735|consen 742 IGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALL 821 (952)
T ss_pred hcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhc
Confidence 2566899999999865421 3344444331 124666665 555432 12
Q ss_pred HHcCCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCch
Q 037483 126 KTHGVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPL 178 (693)
Q Consensus 126 ~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 178 (693)
..-..++.+.-+.-++.|-.+++....-.-..+. ....+.++.+++|.--
T Consensus 822 RpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~---~vdl~~~a~~T~g~tg 871 (952)
T KOG0735|consen 822 RPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDT---DVDLECLAQKTDGFTG 871 (952)
T ss_pred CCCccceeeeCCCCCcHHHHHHHHHHhhccCCcc---ccchHHHhhhcCCCch
Confidence 1112244444455677777788776652111111 1123456666776653
No 316
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.79 E-value=0.016 Score=59.64 Aligned_cols=50 Identities=26% Similarity=0.230 Sum_probs=40.2
Q ss_pred CCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccc
Q 037483 16 LKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFE 70 (693)
Q Consensus 16 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 70 (693)
...++|+++.+..+...+..+. -+.+.|.+|+|||+||+.+++.+...|-
T Consensus 23 ~~~~~g~~~~~~~~l~a~~~~~-----~vll~G~PG~gKT~la~~lA~~l~~~~~ 72 (329)
T COG0714 23 EKVVVGDEEVIELALLALLAGG-----HVLLEGPPGVGKTLLARALARALGLPFV 72 (329)
T ss_pred CCeeeccHHHHHHHHHHHHcCC-----CEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 3458999888888877777543 4899999999999999999987654443
No 317
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.034 Score=60.15 Aligned_cols=163 Identities=23% Similarity=0.235 Sum_probs=88.9
Q ss_pred cCCCCccccchhHHHHHHHHhcCCC---------CCeEEEEEEcCCCchHHHHHHHHHHHHhcccc------eeEEEE-c
Q 037483 14 ETLKKLVRIDSCLEELRSLMDEGLN---------DDVRMIGICGMGGLGKTTLVRAVYDLISHEFE------GSSFLV-D 77 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~~~~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~------~~~~~~-~ 77 (693)
..-.+.-|.|+..+++.+.+.--.+ .-++-|.++|++|.|||.||++++-...--|- .+-|+. .
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGv 226 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGV 226 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCC
Confidence 3346788999888888877644211 13677999999999999999999864322211 111111 1
Q ss_pred ---------ccCCCCCeEEEEEecCCChh---------------h-hhHHhcCCCcCC--CCceEEEEeCChHHHH----
Q 037483 78 ---------EVGCNTKKVLLVIDDVVDIK---------------Q-LEYLVGKREWFG--SGSRIIITSRDEHLLK---- 126 (693)
Q Consensus 78 ---------~~~~~~~~~LlvlDdv~~~~---------------~-~~~l~~~~~~~~--~~~~iliTtR~~~~~~---- 126 (693)
+...+..++++++|.++... | +..+....+.++ .|..|+..|-.+++..
T Consensus 227 GAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALl 306 (596)
T COG0465 227 GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALL 306 (596)
T ss_pred CcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhc
Confidence 11245567999999774332 1 334444444444 2333333333333332
Q ss_pred -HcCCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchh
Q 037483 127 -THGVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLA 179 (693)
Q Consensus 127 -~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 179 (693)
.-..+..+.++.-+-..-.+.++-++-..... ...++ ..|++.+-|.-.|
T Consensus 307 RpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~--~~Vdl-~~iAr~tpGfsGA 357 (596)
T COG0465 307 RPGRFDRQILVELPDIKGREQILKVHAKNKPLA--EDVDL-KKIARGTPGFSGA 357 (596)
T ss_pred CCCCcceeeecCCcchhhHHHHHHHHhhcCCCC--CcCCH-HHHhhhCCCcccc
Confidence 12335566676666666667776555222111 11111 2266667666543
No 318
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.78 E-value=0.0026 Score=35.71 Aligned_cols=20 Identities=45% Similarity=0.629 Sum_probs=11.4
Q ss_pred CCCEEeCCCCCCcccCcccc
Q 037483 517 SLKELYLSKNNFVTLPASIS 536 (693)
Q Consensus 517 ~L~~L~L~~n~l~~lp~~l~ 536 (693)
+|++|+|++|+++.+|+.++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35566666666666655444
No 319
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.76 E-value=0.013 Score=60.39 Aligned_cols=53 Identities=19% Similarity=0.212 Sum_probs=40.1
Q ss_pred CCCccccchhHHHHHHHHhcC-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 16 LKKLVRIDSCLEELRSLMDEG-----------LNDDVRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 16 ~~~~vGr~~~~~~l~~~l~~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
..++||.++....+.-.+... ..-.++-|.++|++|+|||++|++++..+...
T Consensus 11 d~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~ 74 (441)
T TIGR00390 11 DKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 74 (441)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 467999999988887655421 01124679999999999999999999876443
No 320
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.75 E-value=0.017 Score=51.37 Aligned_cols=30 Identities=23% Similarity=0.305 Sum_probs=26.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISHEF 69 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 69 (693)
...+|.++|.+|.||||+|.++++++..+.
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~G 51 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLFAKG 51 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHHcC
Confidence 568999999999999999999999887654
No 321
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.75 E-value=0.016 Score=53.59 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=24.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
...+|+|.|++|+||||+|+.++.....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3569999999999999999999987754
No 322
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.73 E-value=0.041 Score=54.27 Aligned_cols=39 Identities=28% Similarity=0.386 Sum_probs=28.4
Q ss_pred hHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 25 CLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 25 ~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
.++.+.+++.. ...+|.|.|..|.||||++.++.+.+..
T Consensus 68 ~~~~l~~~~~~----~~GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 68 NLEIFRKLLEK----PHGIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred HHHHHHHHHhc----CCCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 33444445432 2458999999999999999999877644
No 323
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.73 E-value=0.027 Score=56.65 Aligned_cols=52 Identities=25% Similarity=0.190 Sum_probs=37.4
Q ss_pred HHHHHHHh-cCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc
Q 037483 27 EELRSLMD-EGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV 79 (693)
Q Consensus 27 ~~l~~~l~-~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~ 79 (693)
..|..+|. .+-+ ..+++-|+|++|+||||||.+++......-...+|+..+.
T Consensus 41 ~~LD~~Lg~GGlp-~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~ 93 (325)
T cd00983 41 LSLDIALGIGGYP-KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEH 93 (325)
T ss_pred HHHHHHhcCCCcc-CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccc
Confidence 34555554 2222 5689999999999999999999877665556677776643
No 324
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.014 Score=56.52 Aligned_cols=107 Identities=19% Similarity=0.225 Sum_probs=61.9
Q ss_pred CccccchhHHHHHHHHhcCC----------CCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeE---EEEccc-----
Q 037483 18 KLVRIDSCLEELRSLMDEGL----------NDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSS---FLVDEV----- 79 (693)
Q Consensus 18 ~~vGr~~~~~~l~~~l~~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~---~~~~~~----- 79 (693)
++-|--+.+.++.+.+.-.- =.-+..++|||++|.|||-+|++++.++.-.|-... .+..-.
T Consensus 133 ~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaR 212 (388)
T KOG0651|consen 133 NVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESAR 212 (388)
T ss_pred HhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHH
Confidence 34455555556655443210 013688999999999999999999987654442110 011000
Q ss_pred --------CCCCCeEEEEEecCCChhh----------------hhHHhcCCCcC--CCCceEEEEeCChHH
Q 037483 80 --------GCNTKKVLLVIDDVVDIKQ----------------LEYLVGKREWF--GSGSRIIITSRDEHL 124 (693)
Q Consensus 80 --------~~~~~~~LlvlDdv~~~~~----------------~~~l~~~~~~~--~~~~~iliTtR~~~~ 124 (693)
.....++.+.+||++.... +-+++.....+ -...++|+||-+...
T Consensus 213 lIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdt 283 (388)
T KOG0651|consen 213 LIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDT 283 (388)
T ss_pred HHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccc
Confidence 1445679999999854311 22233333222 246788999887653
No 325
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.67 E-value=0.024 Score=54.99 Aligned_cols=43 Identities=28% Similarity=0.383 Sum_probs=31.8
Q ss_pred HHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccc
Q 037483 27 EELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFE 70 (693)
Q Consensus 27 ~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 70 (693)
.++...+.... ++..+|+|+|.||+|||||..++...+.++-.
T Consensus 38 ~~ll~~l~p~t-G~a~viGITG~PGaGKSTli~~L~~~l~~~G~ 80 (323)
T COG1703 38 RELLRALYPRT-GNAHVIGITGVPGAGKSTLIEALGRELRERGH 80 (323)
T ss_pred HHHHHHHhhcC-CCCcEEEecCCCCCchHHHHHHHHHHHHHCCc
Confidence 34444444333 37889999999999999999999887655544
No 326
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.67 E-value=0.0099 Score=54.86 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
...|.|+|++|+||||+|+++++++
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999876
No 327
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.64 E-value=0.025 Score=47.73 Aligned_cols=49 Identities=14% Similarity=0.210 Sum_probs=36.1
Q ss_pred CCccccchhHHHHH----HHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 17 KKLVRIDSCLEELR----SLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 17 ~~~vGr~~~~~~l~----~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
..++|.+-..+.+. ..+....+..+-|+..+|.+|+|||.+|+.+++.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 45677664444444 44444445578999999999999999999998863
No 328
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.64 E-value=0.025 Score=55.91 Aligned_cols=60 Identities=22% Similarity=0.186 Sum_probs=44.6
Q ss_pred cCCCCccccchhHH---HHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEE
Q 037483 14 ETLKKLVRIDSCLE---ELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSF 74 (693)
Q Consensus 14 ~~~~~~vGr~~~~~---~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~ 74 (693)
+..+.+||..+..+ -+.+++.++.- ..+.|.|.|++|.|||+||..+++.+...-++...
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mik~gk~-aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~i 98 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMIKQGKM-AGRGILIVGPPGTGKTALAMGIARELGEDVPFVAI 98 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHHHhCcc-cccEEEEECCCCCcHHHHHHHHHHHhCCCCCceee
Confidence 45578999775544 34566665433 46889999999999999999999988766554443
No 329
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.63 E-value=0.013 Score=55.77 Aligned_cols=27 Identities=41% Similarity=0.668 Sum_probs=24.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
...+|+|.|++|+||||||+.++..+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 568999999999999999999988654
No 330
>PRK09354 recA recombinase A; Provisional
Probab=95.63 E-value=0.033 Score=56.51 Aligned_cols=53 Identities=25% Similarity=0.217 Sum_probs=38.8
Q ss_pred HHHHHHHHh-cCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc
Q 037483 26 LEELRSLMD-EGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV 79 (693)
Q Consensus 26 ~~~l~~~l~-~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~ 79 (693)
...|..+|. .+-+ .-+++-|+|++|+||||||.+++......-...+|+..+.
T Consensus 45 i~~LD~~LG~GGip-~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~ 98 (349)
T PRK09354 45 SLALDIALGIGGLP-RGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEH 98 (349)
T ss_pred cHHHHHHhcCCCCc-CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCcc
Confidence 344555555 3222 5689999999999999999999877666656677877644
No 331
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.59 E-value=0.011 Score=54.56 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=22.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
++|.+.|++|+||||+|+++.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999988653
No 332
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=95.54 E-value=0.023 Score=57.13 Aligned_cols=64 Identities=27% Similarity=0.246 Sum_probs=43.8
Q ss_pred cCCCCccccchhHHH---HHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEcc
Q 037483 14 ETLKKLVRIDSCLEE---LRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDE 78 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~---l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~ 78 (693)
.....+||..+..+. +.+++....= ..+.|.+.|++|.|||+||.++++.+....++......+
T Consensus 21 ~~~~GlVGQ~~AReAagiiv~mIk~~K~-aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSE 87 (398)
T PF06068_consen 21 YIADGLVGQEKAREAAGIIVDMIKEGKI-AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSE 87 (398)
T ss_dssp SEETTEES-HHHHHHHHHHHHHHHTT---TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGG
T ss_pred eccccccChHHHHHHHHHHHHHHhcccc-cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccce
Confidence 345789998766554 3455554331 358999999999999999999999998888766655443
No 333
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.54 E-value=0.071 Score=47.60 Aligned_cols=24 Identities=25% Similarity=0.173 Sum_probs=20.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
.+|-|++..|.||||+|...+-+.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra 26 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRA 26 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999999887653
No 334
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.11 Score=50.10 Aligned_cols=159 Identities=14% Similarity=0.152 Sum_probs=85.9
Q ss_pred CCccccchhHHHHHHHHhc---------CCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccccee-------EEEEcc--
Q 037483 17 KKLVRIDSCLEELRSLMDE---------GLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGS-------SFLVDE-- 78 (693)
Q Consensus 17 ~~~vGr~~~~~~l~~~l~~---------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~-------~~~~~~-- 78 (693)
.++-|-+...+.|.+...- +....-+-|.++|++|.||+.||++|+......|=.+ -|+...
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEk 212 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEK 212 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHH
Confidence 4677888888888775422 1111357899999999999999999997654333111 122110
Q ss_pred -------cCCCCCeEEEEEecCCChh---------h-----hhHHhcCCCcC--CCCceEEEEeCChHHHHH---cCCCc
Q 037483 79 -------VGCNTKKVLLVIDDVVDIK---------Q-----LEYLVGKREWF--GSGSRIIITSRDEHLLKT---HGVDE 132 (693)
Q Consensus 79 -------~~~~~~~~LlvlDdv~~~~---------~-----~~~l~~~~~~~--~~~~~iliTtR~~~~~~~---~~~~~ 132 (693)
.....++-+|.+|.++..- . .+-+.+...-+ ..|.-|+-.|..+=++.. .....
T Consensus 213 LVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFek 292 (439)
T KOG0739|consen 213 LVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEK 292 (439)
T ss_pred HHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhc
Confidence 1367889999999985331 1 12222221111 245555556665433222 12223
Q ss_pred eeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCc
Q 037483 133 LCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLP 177 (693)
Q Consensus 133 ~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 177 (693)
.+-++--+...-..+|.-+.+.... .-...--+++.+++.|..
T Consensus 293 RIYIPLPe~~AR~~MF~lhlG~tp~--~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 293 RIYIPLPEAHARARMFKLHLGDTPH--VLTEQDFKELARKTEGYS 335 (439)
T ss_pred ceeccCCcHHHhhhhheeccCCCcc--ccchhhHHHHHhhcCCCC
Confidence 3444433444445677777643222 112222345666666654
No 335
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.52 E-value=0.028 Score=56.41 Aligned_cols=54 Identities=15% Similarity=0.225 Sum_probs=45.3
Q ss_pred CCCCccccchhHHHHHHHHhcCC---CCCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 15 TLKKLVRIDSCLEELRSLMDEGL---NDDVRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 15 ~~~~~vGr~~~~~~l~~~l~~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
-...|+|.++.++++.+.+...+ +.+.+++.+.|+.|.||||||..+.+-+.+.
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y 115 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY 115 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE
Confidence 34589999999999999997743 3468999999999999999999998766443
No 336
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.52 E-value=0.012 Score=54.99 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
...+|+|.|++|+||||+|+.+++..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998754
No 337
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.51 E-value=0.011 Score=53.71 Aligned_cols=28 Identities=29% Similarity=0.457 Sum_probs=23.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccc
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLISHEF 69 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f 69 (693)
+.|.++|.||+||||+|+++++.++++-
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i 29 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEI 29 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhh
Confidence 4688999999999999999998765543
No 338
>PRK13947 shikimate kinase; Provisional
Probab=95.50 E-value=0.012 Score=54.20 Aligned_cols=24 Identities=38% Similarity=0.425 Sum_probs=21.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
-|.|.|++|+||||+|+.+++++.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999998763
No 339
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.48 E-value=0.022 Score=53.77 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=25.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
...+|+|.|++|+||||+|+.+...+...
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~ 51 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHEL 51 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 56899999999999999999999876543
No 340
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.47 E-value=0.32 Score=53.32 Aligned_cols=50 Identities=16% Similarity=0.079 Sum_probs=38.3
Q ss_pred cCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 037483 14 ETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDL 64 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 64 (693)
..-+.++|....+.++.+.+...+. .-.-|.|+|..|+||+.+|+++...
T Consensus 201 ~~f~~~ig~s~~~~~~~~~~~~~A~-~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 201 SAFSQIVAVSPKMRQVVEQARKLAM-LDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred ccccceeECCHHHHHHHHHHHHHhC-CCCCEEEECCCCccHHHHHHHHHHh
Confidence 3446899999988888877765332 2334889999999999999997653
No 341
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.47 E-value=0.038 Score=54.76 Aligned_cols=29 Identities=24% Similarity=0.446 Sum_probs=25.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
..+++.++|++|+||||.+..++..++..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~ 99 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQ 99 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 57899999999999999999999876543
No 342
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=95.46 E-value=0.017 Score=57.76 Aligned_cols=27 Identities=30% Similarity=0.517 Sum_probs=23.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
++|+|.|-||+||||+|..++..++..
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~ 28 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEM 28 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHC
Confidence 478888999999999999998877654
No 343
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.45 E-value=0.018 Score=53.18 Aligned_cols=25 Identities=32% Similarity=0.603 Sum_probs=22.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
+|+|.|.+|+||||+|..++..+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987754
No 344
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.44 E-value=0.011 Score=55.17 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
+|.|.|++|+||||+|+.++++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998754
No 345
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.44 E-value=0.021 Score=53.44 Aligned_cols=28 Identities=25% Similarity=0.432 Sum_probs=24.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
++++.++|+.|+||||.+.+++.+.+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~ 28 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK 28 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc
Confidence 4789999999999999999999876654
No 346
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.018 Score=62.10 Aligned_cols=133 Identities=20% Similarity=0.310 Sum_probs=82.7
Q ss_pred CCccccchhHHHHHHHHhcCC---CCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEE--EEc--cc----------
Q 037483 17 KKLVRIDSCLEELRSLMDEGL---NDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSF--LVD--EV---------- 79 (693)
Q Consensus 17 ~~~vGr~~~~~~l~~~l~~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~--~~~--~~---------- 79 (693)
.+=+|+++-.+++.+.+.-.. .-+.+++..+|++|||||.+|+.+++.+..+|-.... +.+ +.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGA 490 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGA 490 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeecc
Confidence 466899999999999886521 2257899999999999999999999988766532111 011 11
Q ss_pred ----------CCCCCeEEEEEecCCChhh----------hhHHhcC---------CCcCCCCceEEE-EeCC------hH
Q 037483 80 ----------GCNTKKVLLVIDDVVDIKQ----------LEYLVGK---------REWFGSGSRIII-TSRD------EH 123 (693)
Q Consensus 80 ----------~~~~~~~LlvlDdv~~~~~----------~~~l~~~---------~~~~~~~~~ili-TtR~------~~ 123 (693)
..+...-|+.+|.|+.... ++-+-+. ++---.=|+|++ .|-+ ..
T Consensus 491 MPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~p 570 (906)
T KOG2004|consen 491 MPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPP 570 (906)
T ss_pred CChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChh
Confidence 1445677899999864321 1111111 110012355543 3332 22
Q ss_pred HHHHcCCCceeeCCCCCHHHHHHHHHHhc
Q 037483 124 LLKTHGVDELCEPNGLNYDEALQLLNTKA 152 (693)
Q Consensus 124 ~~~~~~~~~~~~l~~L~~~ea~~l~~~~~ 152 (693)
+..+ -+++++.+-..+|-.++-.++.
T Consensus 571 LlDR---MEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 571 LLDR---MEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred hhhh---hheeeccCccHHHHHHHHHHhh
Confidence 3333 4688999999888888777665
No 347
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.41 E-value=0.013 Score=51.11 Aligned_cols=24 Identities=38% Similarity=0.638 Sum_probs=21.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
+|+|.|++|.||||+|+.+++...
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 689999999999999999998653
No 348
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.40 E-value=0.017 Score=52.56 Aligned_cols=45 Identities=24% Similarity=0.302 Sum_probs=34.6
Q ss_pred ccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 037483 19 LVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDL 64 (693)
Q Consensus 19 ~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 64 (693)
+||.+..+.++.+.+...... ..-|.|+|..|+||+.+|+.+.+.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~-~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASS-DLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTS-TS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCC-CCCEEEEcCCCCcHHHHHHHHHHh
Confidence 478899999999888775442 355779999999999999999873
No 349
>PHA02774 E1; Provisional
Probab=95.38 E-value=0.055 Score=58.03 Aligned_cols=65 Identities=17% Similarity=0.256 Sum_probs=42.0
Q ss_pred hHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEcc--c---CCCCCeEEEEEecCC
Q 037483 25 CLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDE--V---GCNTKKVLLVIDDVV 94 (693)
Q Consensus 25 ~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~--~---~~~~~~~LlvlDdv~ 94 (693)
-+..|..++...+ ....+.|+|++|.|||.+|..+++-+.. ....|+... + -+...+ ++||||+.
T Consensus 420 fl~~lk~~l~~~P--Kknciv~~GPP~TGKS~fa~sL~~~L~G--~vi~fvN~~s~FwLqpl~d~k-i~vlDD~t 489 (613)
T PHA02774 420 FLTALKDFLKGIP--KKNCLVIYGPPDTGKSMFCMSLIKFLKG--KVISFVNSKSHFWLQPLADAK-IALLDDAT 489 (613)
T ss_pred HHHHHHHHHhcCC--cccEEEEECCCCCCHHHHHHHHHHHhCC--CEEEEEECccccccchhccCC-EEEEecCc
Confidence 3455556654322 3468999999999999999999987632 223333321 1 234444 69999993
No 350
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.33 E-value=0.051 Score=53.80 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 27 EELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 27 ~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
..+.+.+.. ..+-|.++|++|+|||++++...+..
T Consensus 23 ~~ll~~l~~----~~~pvLl~G~~GtGKT~li~~~l~~l 57 (272)
T PF12775_consen 23 SYLLDLLLS----NGRPVLLVGPSGTGKTSLIQNFLSSL 57 (272)
T ss_dssp HHHHHHHHH----CTEEEEEESSTTSSHHHHHHHHHHCS
T ss_pred HHHHHHHHH----cCCcEEEECCCCCchhHHHHhhhccC
Confidence 344444443 23568999999999999999987643
No 351
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.33 E-value=0.036 Score=54.63 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=27.3
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhccc
Q 037483 39 DDVRMIGICGMGGLGKTTLVRAVYDLISHEF 69 (693)
Q Consensus 39 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 69 (693)
.+..+|.|.|.+|.|||||+..+.+.+....
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~ 132 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSV 132 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCC
Confidence 3689999999999999999999998876654
No 352
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.042 Score=54.84 Aligned_cols=156 Identities=15% Similarity=0.201 Sum_probs=86.7
Q ss_pred CCccccchhHHHHHHHHhcCC-----------CCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeE-------EEEcc
Q 037483 17 KKLVRIDSCLEELRSLMDEGL-----------NDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSS-------FLVDE 78 (693)
Q Consensus 17 ~~~vGr~~~~~~l~~~l~~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~-------~~~~~ 78 (693)
.++-|-+...+.+.+.+.-.. -...+-|.++|++|.|||-||++++.+....|-.+. |+...
T Consensus 92 ~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfgE~ 171 (386)
T KOG0737|consen 92 DDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFGEA 171 (386)
T ss_pred hhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHHHH
Confidence 567778888888877653211 013577999999999999999999998766664332 22110
Q ss_pred ---------cCCCCCeEEEEEecCCChhh------h-------hHHhcCCC--cCCCCceEEE---EeCChH----HHHH
Q 037483 79 ---------VGCNTKKVLLVIDDVVDIKQ------L-------EYLVGKRE--WFGSGSRIII---TSRDEH----LLKT 127 (693)
Q Consensus 79 ---------~~~~~~~~LlvlDdv~~~~~------~-------~~l~~~~~--~~~~~~~ili---TtR~~~----~~~~ 127 (693)
...+-.+..|.+|.|+.... . .+|...++ ....+.+||| |-|... +...
T Consensus 172 eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiRR 251 (386)
T KOG0737|consen 172 QKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAIIRR 251 (386)
T ss_pred HHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHHHHHHh
Confidence 02455789999999865421 1 11111111 1135557777 566544 3333
Q ss_pred cCCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCc
Q 037483 128 HGVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLP 177 (693)
Q Consensus 128 ~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 177 (693)
+. +.+.|+--+.++-.+++.-..-..... ++.. ..+|++.|.|.-
T Consensus 252 ~p--~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD--~~~iA~~t~GyS 296 (386)
T KOG0737|consen 252 LP--RRFHVGLPDAEQRRKILKVILKKEKLE-DDVD--LDEIAQMTEGYS 296 (386)
T ss_pred Cc--ceeeeCCCchhhHHHHHHHHhcccccC-cccC--HHHHHHhcCCCc
Confidence 33 344554444444444444433111111 1111 456777888875
No 353
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.31 E-value=0.018 Score=55.12 Aligned_cols=60 Identities=25% Similarity=0.324 Sum_probs=45.5
Q ss_pred CCCccCCCCccccchhHHHHHHHHhcCC----------CCCeEEEEEEcCCCchHHHHHHHHHHHHhccc
Q 037483 10 PVKSETLKKLVRIDSCLEELRSLMDEGL----------NDDVRMIGICGMGGLGKTTLVRAVYDLISHEF 69 (693)
Q Consensus 10 ~~~~~~~~~~vGr~~~~~~l~~~l~~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 69 (693)
.+|...-.++-|-+..+++|.+...-.- -..++-|.+||.+|.|||-||++++++-+..|
T Consensus 178 KaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATF 247 (440)
T KOG0726|consen 178 KAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATF 247 (440)
T ss_pred cCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhh
Confidence 3445555788899999999998764421 11367799999999999999999998655554
No 354
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.30 E-value=0.0092 Score=33.44 Aligned_cols=19 Identities=37% Similarity=0.497 Sum_probs=10.1
Q ss_pred cceeccCCcCceeecCCcC
Q 037483 364 LSELYLDGTFITKLPLSIE 382 (693)
Q Consensus 364 L~~L~L~~~~l~~l~~~~~ 382 (693)
|++|+|++|.++.+|++++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555555443
No 355
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.25 E-value=0.027 Score=61.85 Aligned_cols=52 Identities=17% Similarity=0.256 Sum_probs=41.2
Q ss_pred CCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 15 TLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 15 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
.++..+.|.+..+.|.+....... ...+|.|+|++|+||||+|++++.++..
T Consensus 367 ~pP~~f~rpeV~~iL~~~~~~r~~-~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 367 EIPEWFSFPEVVAELRRTYPPRHK-QGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred CCChhhcHHHHHHHHHHHhccccC-CCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 345677888888877777765444 4568999999999999999999997754
No 356
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.24 E-value=0.033 Score=55.13 Aligned_cols=39 Identities=23% Similarity=0.154 Sum_probs=34.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEcc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDE 78 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~ 78 (693)
..+++.|+|.+|+|||++|.++..+...+...++|+..+
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~ 60 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTE 60 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 578999999999999999999999887778888888753
No 357
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.24 E-value=0.029 Score=57.97 Aligned_cols=52 Identities=19% Similarity=0.218 Sum_probs=40.2
Q ss_pred CCCccccchhHHHHHHHHhcC-------CC----CCeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 16 LKKLVRIDSCLEELRSLMDEG-------LN----DDVRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 16 ~~~~vGr~~~~~~l~~~l~~~-------~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
...++|.++..+.+..++... .+ -..+-|.++|++|+|||++|+.++..+..
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~ 76 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457999999999998777431 00 12467999999999999999999987643
No 358
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.23 E-value=0.014 Score=52.34 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 037483 43 MIGICGMGGLGKTTLVRAVYDL 64 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~ 64 (693)
++.|.|++|+||||+|+.+.+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999999875
No 359
>PF13245 AAA_19: Part of AAA domain
Probab=95.20 E-value=0.028 Score=43.36 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=18.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDL 64 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~ 64 (693)
.+++.|.|+||.|||+++.+....
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357888999999999665555443
No 360
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=95.20 E-value=0.025 Score=56.42 Aligned_cols=26 Identities=23% Similarity=0.466 Sum_probs=22.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
+|++.|-||+||||+|..++..+..+
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La~~ 27 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFAKL 27 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHHhC
Confidence 47778999999999999998877654
No 361
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.20 E-value=0.017 Score=49.65 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDL 64 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~ 64 (693)
..-|.|+|.||+||||+|.+++..
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~ 30 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEK 30 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHH
Confidence 345899999999999999999864
No 362
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.19 E-value=0.02 Score=53.66 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
..+|.|.|.+|+||||+|+.++++.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999999863
No 363
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=95.17 E-value=0.027 Score=56.17 Aligned_cols=27 Identities=22% Similarity=0.443 Sum_probs=23.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
++|+|.|-||+||||++..++..++.+
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la~~ 29 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFAKL 29 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 678888999999999999998877654
No 364
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.14 E-value=0.022 Score=53.01 Aligned_cols=49 Identities=20% Similarity=0.231 Sum_probs=34.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc----CCCCCeEEEE
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV----GCNTKKVLLV 89 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~----~~~~~~~Llv 89 (693)
.|+++|+|+.|+|||||+..+.++...+|...+...... ...+..+-+|
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fv 54 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFV 54 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE-
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEE
Confidence 468999999999999999999998888886555444311 2345555544
No 365
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.14 E-value=0.017 Score=51.27 Aligned_cols=20 Identities=40% Similarity=0.695 Sum_probs=18.6
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 037483 43 MIGICGMGGLGKTTLVRAVY 62 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~ 62 (693)
.|.|+|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 366
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.12 E-value=0.084 Score=54.46 Aligned_cols=35 Identities=26% Similarity=0.367 Sum_probs=27.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEE
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFL 75 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 75 (693)
...|.|.|+.|.||||++.++.+.+.......++.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~t 156 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIIT 156 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEE
Confidence 46899999999999999999988776554444443
No 367
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.12 E-value=0.037 Score=55.00 Aligned_cols=28 Identities=32% Similarity=0.406 Sum_probs=24.2
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 39 DDVRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 39 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
..+.+|+|.|..|+||||+|+.+...+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4678999999999999999988876554
No 368
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.11 E-value=0.016 Score=53.55 Aligned_cols=23 Identities=35% Similarity=0.689 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
+|+|.|.+|+||||+|+.+++.+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998864
No 369
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.10 E-value=0.054 Score=65.42 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDL 64 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~ 64 (693)
.++-|.++|++|.|||.||+++|..
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~e 1653 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATN 1653 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHh
Confidence 3677999999999999999999873
No 370
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=95.08 E-value=0.42 Score=54.15 Aligned_cols=49 Identities=18% Similarity=0.303 Sum_probs=39.4
Q ss_pred CCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 037483 15 TLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDL 64 (693)
Q Consensus 15 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 64 (693)
.-+.++|.+..+.++.+.+..... ...-|.|+|.+|+||+++|+++.+.
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~a~-~~~pvli~Ge~GtGK~~~A~~ih~~ 371 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQAAK-SSFPVLLCGEEGVGKALLAQAIHNE 371 (638)
T ss_pred cccceEECCHHHHHHHHHHHHHhC-cCCCEEEECCCCcCHHHHHHHHHHh
Confidence 346799999999988888776444 2334889999999999999999874
No 371
>PRK06217 hypothetical protein; Validated
Probab=95.08 E-value=0.017 Score=53.66 Aligned_cols=23 Identities=39% Similarity=0.469 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
.|+|.|.+|+||||+|+++++..
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999865
No 372
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.06 E-value=0.039 Score=54.42 Aligned_cols=38 Identities=18% Similarity=0.192 Sum_probs=28.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVD 77 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~ 77 (693)
...++.|.|.+|+|||++|.+++.....+-..++|+..
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 46889999999999999999987654444445555553
No 373
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.06 E-value=0.018 Score=51.27 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
+|.|.|++|+||||+|+.++++.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999865
No 374
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.06 E-value=0.074 Score=49.45 Aligned_cols=79 Identities=23% Similarity=0.318 Sum_probs=52.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhcc---c-ceeEEEEccc--------C--------------------------CCC
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLISHE---F-EGSSFLVDEV--------G--------------------------CNT 83 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~~~~---f-~~~~~~~~~~--------~--------------------------~~~ 83 (693)
--..|.|+||+|||||.+.+++-++.. | +...-+.++. + ..-
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 347899999999999999999876554 3 2333333321 0 122
Q ss_pred CeEEEEEecCCChhhhhHHhcCCCcCCCCceEEEEeCChH
Q 037483 84 KKVLLVIDDVVDIKQLEYLVGKREWFGSGSRIIITSRDEH 123 (693)
Q Consensus 84 ~~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~iliTtR~~~ 123 (693)
.+=++|+|.+-..++..++.... ..|.+++.|..--.
T Consensus 218 ~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~~ 254 (308)
T COG3854 218 SPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGNG 254 (308)
T ss_pred CCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeecccc
Confidence 45678999998777665555443 46888877765433
No 375
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.04 E-value=0.02 Score=53.13 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=22.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
.+++|.|++|+||||+++.++..+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988653
No 376
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.04 E-value=0.016 Score=50.86 Aligned_cols=26 Identities=27% Similarity=0.566 Sum_probs=21.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
.|+|.|+.|+|||||++.+++.....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence 37899999999999999998765443
No 377
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.04 E-value=0.027 Score=52.59 Aligned_cols=34 Identities=21% Similarity=0.089 Sum_probs=25.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhcccceeEEEE
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLV 76 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 76 (693)
++.|.|.+|+|||++|.+++......-..+.|+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 3689999999999999998876544434455554
No 378
>PRK13948 shikimate kinase; Provisional
Probab=95.02 E-value=0.021 Score=52.65 Aligned_cols=27 Identities=19% Similarity=0.337 Sum_probs=23.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
..+.|++.|+.|+||||+++.+++++.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 467899999999999999999998763
No 379
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.02 E-value=0.021 Score=52.62 Aligned_cols=26 Identities=38% Similarity=0.500 Sum_probs=23.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
..+|+|-||=|+||||||+.+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999998765
No 380
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.01 E-value=0.027 Score=51.11 Aligned_cols=28 Identities=25% Similarity=0.468 Sum_probs=25.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
...+++|+|..|+|||||++.+...+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4679999999999999999999987755
No 381
>PRK13949 shikimate kinase; Provisional
Probab=95.00 E-value=0.02 Score=52.30 Aligned_cols=24 Identities=38% Similarity=0.397 Sum_probs=21.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
-|.|.|++|.||||+++.+++.+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998663
No 382
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.97 E-value=0.083 Score=54.40 Aligned_cols=29 Identities=21% Similarity=0.214 Sum_probs=24.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
+..+++++|+.|+||||++.+++.+...+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~ 164 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMR 164 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 35799999999999999999999875443
No 383
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.97 E-value=0.066 Score=54.31 Aligned_cols=41 Identities=27% Similarity=0.400 Sum_probs=30.3
Q ss_pred HHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 27 EELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 27 ~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
.++.+.+... .++..+|+|.|.+|+|||||+..+...++..
T Consensus 43 ~~l~~~~~~~-~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 43 QELLDALLPH-TGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHHhhc-CCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3444444322 2367899999999999999999998877654
No 384
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.96 E-value=0.029 Score=49.31 Aligned_cols=25 Identities=28% Similarity=0.554 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
.++|+|+|.+|+||||+...+.+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 6899999999999999998887765
No 385
>PRK05973 replicative DNA helicase; Provisional
Probab=94.95 E-value=0.037 Score=53.15 Aligned_cols=39 Identities=18% Similarity=0.037 Sum_probs=30.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEcc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDE 78 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~ 78 (693)
...++.|.|.+|+|||++|.+++.....+-..++|+.-+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 357899999999999999999987665544556666553
No 386
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=94.95 E-value=0.022 Score=51.14 Aligned_cols=28 Identities=32% Similarity=0.432 Sum_probs=24.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccc
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLISHEF 69 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f 69 (693)
+-|++.||.|+||||+.+++++.+.-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 4589999999999999999998776555
No 387
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=94.94 E-value=0.049 Score=52.70 Aligned_cols=40 Identities=28% Similarity=0.276 Sum_probs=29.1
Q ss_pred HHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 28 ELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 28 ~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
.|.++|..+-. ...++.|+|.+|+|||++|.+++......
T Consensus 7 ~lD~~l~GG~~-~g~v~~I~G~~GsGKT~l~~~ia~~~~~~ 46 (226)
T cd01393 7 ALDELLGGGIP-TGRITEIFGEFGSGKTQLCLQLAVEAQLP 46 (226)
T ss_pred HHHHHhCCCCc-CCcEEEEeCCCCCChhHHHHHHHHHhhcc
Confidence 34444543222 46899999999999999999998765443
No 388
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.93 E-value=0.023 Score=51.13 Aligned_cols=22 Identities=41% Similarity=0.511 Sum_probs=20.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 037483 44 IGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 44 v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
|.|+|++|.||||+|+.+++.+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999865
No 389
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.91 E-value=0.029 Score=52.07 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=23.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
+.++|+|.|++|+|||||++++.++.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 46899999999999999999998753
No 390
>PRK14974 cell division protein FtsY; Provisional
Probab=94.91 E-value=0.056 Score=54.99 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=24.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
++.+|+++|++|+||||.+..++..++.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~ 166 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKK 166 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999999887654
No 391
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.90 E-value=0.085 Score=50.26 Aligned_cols=23 Identities=22% Similarity=0.275 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYD 63 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~ 63 (693)
.++++|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48999999999999999999874
No 392
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.90 E-value=0.02 Score=54.88 Aligned_cols=24 Identities=42% Similarity=0.667 Sum_probs=21.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
+|+|.|.+|+||||+|+.++..+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998775
No 393
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.90 E-value=0.055 Score=52.68 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=34.3
Q ss_pred HHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEc
Q 037483 27 EELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVD 77 (693)
Q Consensus 27 ~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~ 77 (693)
..|.++|..+-. ...++.|.|.+|.|||++|.++......+-..++|+..
T Consensus 8 ~~LD~~l~GG~~-~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 8 PGMDEILHGGIP-ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred HhHHHHhcCCCc-CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 344555544333 56899999999999999999987654344455556553
No 394
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.90 E-value=0.014 Score=30.32 Aligned_cols=16 Identities=44% Similarity=0.727 Sum_probs=6.5
Q ss_pred CCCEEeCCCCCCcccC
Q 037483 517 SLKELYLSKNNFVTLP 532 (693)
Q Consensus 517 ~L~~L~L~~n~l~~lp 532 (693)
+|+.|+|++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555443
No 395
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.90 E-value=0.038 Score=55.63 Aligned_cols=29 Identities=31% Similarity=0.431 Sum_probs=25.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccc
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISHEF 69 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 69 (693)
.+++...|.||+||||+|.+.+-..++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g 30 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESG 30 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcC
Confidence 58999999999999999999887766653
No 396
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.88 E-value=0.02 Score=54.02 Aligned_cols=23 Identities=39% Similarity=0.710 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
+|+|.|.+|+||||+|+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998865
No 397
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.88 E-value=0.028 Score=55.27 Aligned_cols=25 Identities=28% Similarity=0.557 Sum_probs=22.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
.|.+.|++|+||||+|+++++....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999987654
No 398
>PRK13975 thymidylate kinase; Provisional
Probab=94.88 E-value=0.027 Score=53.15 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=23.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
..|+|.|+.|+||||+|+.+++++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 58999999999999999999987753
No 399
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.86 E-value=0.045 Score=56.93 Aligned_cols=22 Identities=41% Similarity=0.656 Sum_probs=19.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 037483 42 RMIGICGMGGLGKTTLVRAVYD 63 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~ 63 (693)
..++|.|++|.||||||+.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 5799999999999999999853
No 400
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.84 E-value=0.073 Score=47.22 Aligned_cols=84 Identities=23% Similarity=0.299 Sum_probs=49.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEc--------cc------------CCCCCeEEEEEecCCCh---h
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVD--------EV------------GCNTKKVLLVIDDVVDI---K 97 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~--------~~------------~~~~~~~LlvlDdv~~~---~ 97 (693)
..+++|.|..|.|||||++.++..... ..+.+++.. .. .+..++-++++|+-... .
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~ 104 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEP-DEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLE 104 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCC-CceEEEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 468999999999999999999864321 223233221 01 14456778999987432 2
Q ss_pred hhhHHhcCCCcCCCCceEEEEeCChHHHHH
Q 037483 98 QLEYLVGKREWFGSGSRIIITSRDEHLLKT 127 (693)
Q Consensus 98 ~~~~l~~~~~~~~~~~~iliTtR~~~~~~~ 127 (693)
..+.+...+... +..||++|.+......
T Consensus 105 ~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 105 SIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred HHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 222222222211 3468888887655443
No 401
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=94.83 E-value=0.046 Score=50.79 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=31.0
Q ss_pred CCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHH
Q 037483 17 KKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYD 63 (693)
Q Consensus 17 ~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~ 63 (693)
.+++|.+.....+.-.... .+-+.+.|++|+|||++|+.+..
T Consensus 3 ~dI~GQe~aKrAL~iAAaG-----~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG-----GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC-----C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcC-----CCCeEEECCCCCCHHHHHHHHHH
Confidence 4678888777766655542 35799999999999999999975
No 402
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.82 E-value=0.25 Score=51.35 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=23.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
..++|.++|+.|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999987654
No 403
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.82 E-value=0.06 Score=54.19 Aligned_cols=51 Identities=27% Similarity=0.257 Sum_probs=35.4
Q ss_pred HHHHHHHh-cCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEcc
Q 037483 27 EELRSLMD-EGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDE 78 (693)
Q Consensus 27 ~~l~~~l~-~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~ 78 (693)
..|..+|. .+-+ ..+++.|+|++|+||||||.+++......-...+|+..+
T Consensus 41 ~~LD~~Lg~GGlp-~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E 92 (321)
T TIGR02012 41 LSLDLALGVGGLP-RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAE 92 (321)
T ss_pred HHHHHHhcCCCCc-CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEccc
Confidence 44555554 2222 568999999999999999999887765554455566543
No 404
>PRK13946 shikimate kinase; Provisional
Probab=94.81 E-value=0.024 Score=52.78 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
.+.|++.|++|+||||+++.+++++
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999999876
No 405
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.79 E-value=0.035 Score=49.58 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=21.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
+|.|.|.+|+||||+|+.+...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998764
No 406
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=94.79 E-value=0.04 Score=55.55 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=26.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEE
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLV 76 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 76 (693)
.++|+|.|-||+||||.+..++..+.+.-..+..+.
T Consensus 4 ~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD 39 (295)
T PRK13234 4 LRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVG 39 (295)
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 468888899999999999998876655433334443
No 407
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.78 E-value=0.025 Score=51.92 Aligned_cols=22 Identities=36% Similarity=0.404 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 037483 43 MIGICGMGGLGKTTLVRAVYDL 64 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~ 64 (693)
.|.|.|.+|.||||+|+.++++
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999986
No 408
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.77 E-value=0.057 Score=55.93 Aligned_cols=49 Identities=29% Similarity=0.341 Sum_probs=33.5
Q ss_pred HHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEE
Q 037483 27 EELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLV 76 (693)
Q Consensus 27 ~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 76 (693)
.++.+.|..+-. ...++.|.|.+|+|||||+.+++..+...-..+.|+.
T Consensus 69 ~eLD~vLgGGi~-~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 69 EELDRVLGGGLV-PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred HHHHHhhcCCcc-CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 445555543222 3579999999999999999999987765433444443
No 409
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.75 E-value=0.049 Score=51.03 Aligned_cols=77 Identities=22% Similarity=0.257 Sum_probs=52.5
Q ss_pred CCccccchhHHHHHHHHhcC----------CCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc-------
Q 037483 17 KKLVRIDSCLEELRSLMDEG----------LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV------- 79 (693)
Q Consensus 17 ~~~vGr~~~~~~l~~~l~~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~------- 79 (693)
.++-|.|-..+++.+...-. .-+.+|-|.++|++|.|||-||+++++.-...|-.+ +..++
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firv--vgsefvqkylge 232 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRV--VGSEFVQKYLGE 232 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeee--ccHHHHHHHhcc
Confidence 46677888888888765431 123578899999999999999999998654444211 11111
Q ss_pred -----------CCCCCeEEEEEecCCC
Q 037483 80 -----------GCNTKKVLLVIDDVVD 95 (693)
Q Consensus 80 -----------~~~~~~~LlvlDdv~~ 95 (693)
...+.+.++.+|.++.
T Consensus 233 gprmvrdvfrlakenapsiifideida 259 (408)
T KOG0727|consen 233 GPRMVRDVFRLAKENAPSIIFIDEIDA 259 (408)
T ss_pred CcHHHHHHHHHHhccCCcEEEeehhhh
Confidence 2456678888998754
No 410
>PRK13768 GTPase; Provisional
Probab=94.75 E-value=0.044 Score=53.82 Aligned_cols=28 Identities=32% Similarity=0.520 Sum_probs=24.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
..+++|.|+||+||||++..++...+..
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~ 29 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQ 29 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhc
Confidence 4689999999999999999998876553
No 411
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.72 E-value=0.048 Score=50.99 Aligned_cols=26 Identities=35% Similarity=0.571 Sum_probs=21.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
.|+|+|-||+||||+|..++.++.++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~ 27 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSK 27 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhc
Confidence 58999999999999999977665443
No 412
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=94.71 E-value=0.051 Score=52.94 Aligned_cols=36 Identities=28% Similarity=0.374 Sum_probs=26.6
Q ss_pred HHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 29 LRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 29 l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
|.++|..+-. ...++.|+|.+|+|||++|.+++...
T Consensus 8 lD~~l~GGi~-~g~i~~i~G~~GsGKT~l~~~l~~~~ 43 (235)
T cd01123 8 LDELLGGGIE-TGSITEIFGEFGSGKTQLCHQLAVTV 43 (235)
T ss_pred hHhhccCCCC-CCeEEEEECCCCCCHHHHHHHHHHHe
Confidence 3344443222 46899999999999999999998643
No 413
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=94.68 E-value=0.051 Score=49.37 Aligned_cols=34 Identities=26% Similarity=0.440 Sum_probs=29.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcccceeEE
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSF 74 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~ 74 (693)
...|.|-|++|+|||+|..+.++.++++|...+.
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI 46 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVI 46 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEE
Confidence 4899999999999999999999999988865443
No 414
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.68 E-value=0.042 Score=57.73 Aligned_cols=51 Identities=18% Similarity=0.189 Sum_probs=36.9
Q ss_pred CCccccchhHHHHHHHHhc-------CCC------CCeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 17 KKLVRIDSCLEELRSLMDE-------GLN------DDVRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 17 ~~~vGr~~~~~~l~~~l~~-------~~~------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
..+||.++.++.+...+.. ... -...-|.++|++|+|||++|+.++.....
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~ 134 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDV 134 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4689999988888655411 000 02356899999999999999999986543
No 415
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.66 E-value=0.039 Score=49.83 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
..+++|.|++|+|||||++++.++.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4789999999999999999999865
No 416
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.66 E-value=0.078 Score=53.72 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=25.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
...+++++|++|+||||++..++..++.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~ 140 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKA 140 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 5789999999999999999999987654
No 417
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.66 E-value=0.047 Score=48.01 Aligned_cols=34 Identities=21% Similarity=0.373 Sum_probs=25.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhc-ccceeEEE
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLISH-EFEGSSFL 75 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~ 75 (693)
++|.|+|..|+|||||++.+.+.+.+ .+....+.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik 35 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIK 35 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEE
Confidence 47999999999999999999998764 34433333
No 418
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.64 E-value=0.1 Score=47.87 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDL 64 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~ 64 (693)
..+++|.|+.|.|||||.+.++..
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999999753
No 419
>PRK14530 adenylate kinase; Provisional
Probab=94.63 E-value=0.029 Score=53.75 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
.|+|.|++|+||||+|+.+++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
No 420
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.58 E-value=0.05 Score=60.40 Aligned_cols=63 Identities=21% Similarity=0.410 Sum_probs=47.0
Q ss_pred CCCccCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc-cceeEEEEc
Q 037483 10 PVKSETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHE-FEGSSFLVD 77 (693)
Q Consensus 10 ~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~ 77 (693)
+.|.....+++|.++.++.+...+... +-+.++|++|+|||++|+++++.+... |...+++.+
T Consensus 11 ~~~~~~~~~viG~~~a~~~l~~a~~~~-----~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n 74 (608)
T TIGR00764 11 PVPERLIDQVIGQEEAVEIIKKAAKQK-----RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPN 74 (608)
T ss_pred CcchhhHhhccCHHHHHHHHHHHHHcC-----CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeC
Confidence 334455678999999998888877743 256799999999999999999887554 344445544
No 421
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.57 E-value=0.023 Score=51.69 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 037483 44 IGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 44 v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
|+|.|++|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999865
No 422
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.56 E-value=0.2 Score=54.86 Aligned_cols=157 Identities=14% Similarity=0.134 Sum_probs=85.7
Q ss_pred CccccchhHHHHHHHHhcCCC------CCeEEEEEEcCCCchHHHHHHHHHHHHhccc---ceeEEEEccc---------
Q 037483 18 KLVRIDSCLEELRSLMDEGLN------DDVRMIGICGMGGLGKTTLVRAVYDLISHEF---EGSSFLVDEV--------- 79 (693)
Q Consensus 18 ~~vGr~~~~~~l~~~l~~~~~------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f---~~~~~~~~~~--------- 79 (693)
...+++..+..+.+.+..... .-..++.++|.+|+||||++++++....-++ ++.-++....
T Consensus 402 ~~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~ 481 (953)
T KOG0736|consen 402 SPPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQA 481 (953)
T ss_pred CCccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHH
Confidence 345677777778888766322 1357899999999999999999998654332 1111111111
Q ss_pred ----CCCCCeEEEEEecCC-------Chhh------hhHHhc--CCCcCCCCceEEEEeCC-hHHHHHcC--CCceeeCC
Q 037483 80 ----GCNTKKVLLVIDDVV-------DIKQ------LEYLVG--KREWFGSGSRIIITSRD-EHLLKTHG--VDELCEPN 137 (693)
Q Consensus 80 ----~~~~~~~LlvlDdv~-------~~~~------~~~l~~--~~~~~~~~~~iliTtR~-~~~~~~~~--~~~~~~l~ 137 (693)
...-.+.+|.+-|++ ..++ ++.+.. ......++..++.||-+ +++..... ..+.++++
T Consensus 482 ~f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~ 561 (953)
T KOG0736|consen 482 IFSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVP 561 (953)
T ss_pred HHHHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhhhhhccCC
Confidence 112244555554442 1111 222222 11112345555555544 22222221 23567899
Q ss_pred CCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCc
Q 037483 138 GLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLP 177 (693)
Q Consensus 138 ~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 177 (693)
.+++++-.++|+.++-... -+.....+.++++|.|.-
T Consensus 562 ~lse~qRl~iLq~y~~~~~---~n~~v~~k~~a~~t~gfs 598 (953)
T KOG0736|consen 562 ALSEEQRLEILQWYLNHLP---LNQDVNLKQLARKTSGFS 598 (953)
T ss_pred CCCHHHHHHHHHHHHhccc---cchHHHHHHHHHhcCCCC
Confidence 9999999999999883221 112223455666676654
No 423
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.54 E-value=0.082 Score=51.22 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=32.7
Q ss_pred HHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEc
Q 037483 28 ELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVD 77 (693)
Q Consensus 28 ~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~ 77 (693)
.|.+.+..+-. ...++.|.|.+|.|||++|.+++.....+-..++|+..
T Consensus 8 ~LD~~l~GGi~-~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 8 GLDKLLEGGIP-RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred hHHHhhcCCCc-CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 44444433222 46899999999999999999987654334445555553
No 424
>PLN02200 adenylate kinase family protein
Probab=94.53 E-value=0.036 Score=53.59 Aligned_cols=26 Identities=19% Similarity=0.172 Sum_probs=22.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
.+.+|.|.|++|+||||+|+.+++..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998754
No 425
>PRK06761 hypothetical protein; Provisional
Probab=94.52 E-value=0.047 Score=53.87 Aligned_cols=27 Identities=33% Similarity=0.642 Sum_probs=24.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
++|.|.|++|+||||+|+.+++.+...
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~ 30 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQN 30 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcC
Confidence 689999999999999999999987543
No 426
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.52 E-value=0.15 Score=50.30 Aligned_cols=83 Identities=25% Similarity=0.329 Sum_probs=54.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcc-----cceeEEEE-c---cc------------C------------------
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISHE-----FEGSSFLV-D---EV------------G------------------ 80 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f~~~~~~~-~---~~------------~------------------ 80 (693)
+...++|.|+.|.|||||.+.++..++.. |++.-... + +. +
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~ 189 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMML 189 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHH
Confidence 45789999999999999999998765432 11111110 0 00 0
Q ss_pred -CCCCeEEEEEecCCChhhhhHHhcCCCcCCCCceEEEEeCChHHH
Q 037483 81 -CNTKKVLLVIDDVVDIKQLEYLVGKREWFGSGSRIIITSRDEHLL 125 (693)
Q Consensus 81 -~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~iliTtR~~~~~ 125 (693)
....+-++++|.+...+.+..+.... ..|..+|+||-+..+.
T Consensus 190 i~~~~P~villDE~~~~e~~~~l~~~~---~~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 190 IRSMSPDVIVVDEIGREEDVEALLEAL---HAGVSIIATAHGRDVE 232 (270)
T ss_pred HHhCCCCEEEEeCCCcHHHHHHHHHHH---hCCCEEEEEechhHHH
Confidence 22357789999998777666665543 2578899999876553
No 427
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.52 E-value=0.038 Score=52.45 Aligned_cols=26 Identities=19% Similarity=0.373 Sum_probs=22.8
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHH
Q 037483 39 DDVRMIGICGMGGLGKTTLVRAVYDL 64 (693)
Q Consensus 39 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 64 (693)
+..+.++|.|++|+|||||+..+.+.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 36789999999999999999998753
No 428
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=94.50 E-value=0.061 Score=45.49 Aligned_cols=25 Identities=36% Similarity=0.652 Sum_probs=22.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 44 IGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 44 v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
|++.|.||+||||++..+++.++++
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~ 26 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEK 26 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 7899999999999999999877654
No 429
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.50 E-value=0.036 Score=61.34 Aligned_cols=63 Identities=17% Similarity=0.355 Sum_probs=49.1
Q ss_pred CCCccCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhc-ccceeEEEEc
Q 037483 10 PVKSETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISH-EFEGSSFLVD 77 (693)
Q Consensus 10 ~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~ 77 (693)
..+|..-.+++|.++.++.|...+... +.+.++|.+|+||||+|+.+++.+.. +++...|..+
T Consensus 24 ~~~~~~~~~vigq~~a~~~L~~~~~~~-----~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~n 87 (637)
T PRK13765 24 EVPERLIDQVIGQEHAVEVIKKAAKQR-----RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPN 87 (637)
T ss_pred ccCcccHHHcCChHHHHHHHHHHHHhC-----CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeC
Confidence 345566678999999999888877642 36999999999999999999987643 3466677765
No 430
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.47 E-value=0.033 Score=51.14 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
...|+|.|+.|.||||+|+.+++..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 3469999999999999999999865
No 431
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.46 E-value=0.084 Score=55.76 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=25.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
.+.+|.++|.+|+||||.|..++..++.+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 57899999999999999999999877653
No 432
>PRK14527 adenylate kinase; Provisional
Probab=94.46 E-value=0.035 Score=52.08 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
...+|.|.|++|+||||+|+.++++.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998754
No 433
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=94.46 E-value=0.045 Score=54.75 Aligned_cols=27 Identities=33% Similarity=0.597 Sum_probs=23.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
|.|+|+|-||+||||++..++..++.+
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~ 27 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEM 27 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHC
Confidence 468999999999999999999877654
No 434
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.45 E-value=0.059 Score=49.61 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=22.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
++.+.|++|+||||++..++..+.+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 67899999999999999999877654
No 435
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.44 E-value=0.16 Score=43.98 Aligned_cols=104 Identities=16% Similarity=0.224 Sum_probs=51.5
Q ss_pred ccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecC-CcCCCCCCCEEecCCCCCCccCCCCCCCCccc
Q 037483 333 SLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPL-SIELLTGLELLNLNDCKNLLRLPSSIDGCFKL 411 (693)
Q Consensus 333 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L 411 (693)
.|.++++|+.+.+.. .........|.++++|+.+.+.++ +..++. .+..+++|+.+.+.++ ...++.
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~-------- 74 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGD-------- 74 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-T--------
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc--cccccc--------
Confidence 355666777777764 333333445777778888888774 665544 3566667888888542 222221
Q ss_pred ccccccccCCCCccEEecCCCccccC-CCccccCCCCCEEEccC
Q 037483 412 ENVSETLGQVEILEELDISGTTIREP-PSSIFAIKNLKKLSFSG 454 (693)
Q Consensus 412 ~~lp~~l~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~ 454 (693)
..+..+++|+.+++..+ +..+ ...+.++ +|+.+.+..
T Consensus 75 ----~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 75 ----NAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ----TTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ----ccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 22455677788887664 5555 3345555 888887764
No 436
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.42 E-value=0.053 Score=48.44 Aligned_cols=35 Identities=29% Similarity=0.563 Sum_probs=29.3
Q ss_pred chhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHH
Q 037483 23 DSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYD 63 (693)
Q Consensus 23 ~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~ 63 (693)
.+.+++|.+.+. + +++++.|..|+|||||+..+..
T Consensus 23 ~~g~~~l~~~l~-----~-k~~vl~G~SGvGKSSLiN~L~~ 57 (161)
T PF03193_consen 23 GEGIEELKELLK-----G-KTSVLLGQSGVGKSSLINALLP 57 (161)
T ss_dssp TTTHHHHHHHHT-----T-SEEEEECSTTSSHHHHHHHHHT
T ss_pred CcCHHHHHHHhc-----C-CEEEEECCCCCCHHHHHHHHHh
Confidence 355778888876 2 6899999999999999999875
No 437
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.42 E-value=0.053 Score=44.06 Aligned_cols=25 Identities=36% Similarity=0.610 Sum_probs=22.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
++.+.|.+|+||||++..++..+++
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999998865
No 438
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.38 E-value=0.03 Score=51.96 Aligned_cols=24 Identities=42% Similarity=0.592 Sum_probs=21.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
++++|.|+.|+||||||+.+++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999998743
No 439
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.37 E-value=0.054 Score=48.60 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=23.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
+++|+|+.|+||||++.++...++.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999987655
No 440
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.36 E-value=0.082 Score=55.35 Aligned_cols=29 Identities=24% Similarity=0.304 Sum_probs=25.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
.+.+|.++|.+|+||||.|..++..++.+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 47899999999999999999998876543
No 441
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.36 E-value=0.035 Score=50.49 Aligned_cols=21 Identities=43% Similarity=0.423 Sum_probs=17.8
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 037483 44 IGICGMGGLGKTTLVRAVYDL 64 (693)
Q Consensus 44 v~I~G~~GiGKTtLa~~~~~~ 64 (693)
|+|+|.+|+|||||+.++++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 799999999999999999976
No 442
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=94.34 E-value=0.046 Score=55.13 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=23.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
|++.+.|-||+||||+|.+.+-..+++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~ 28 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARR 28 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhC
Confidence 589999999999999999998776553
No 443
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=94.33 E-value=0.036 Score=51.62 Aligned_cols=29 Identities=34% Similarity=0.510 Sum_probs=23.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccc
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISHEF 69 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 69 (693)
.+.|+|.|++|+||+||+..+.+.....|
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~ 30 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAF 30 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcce
Confidence 46899999999999999999987643334
No 444
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.32 E-value=0.096 Score=45.33 Aligned_cols=59 Identities=24% Similarity=0.278 Sum_probs=22.8
Q ss_pred ccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccC-ccccCCCCCCEEeccc
Q 037483 486 SLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLP-ASISGLLNLKELELED 548 (693)
Q Consensus 486 ~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~ 548 (693)
.+.++++|+.+.+.++.. . .-...+..+++|+.+++..+ ++.++ ..+.++ +|+.+.+..
T Consensus 53 ~F~~~~~l~~i~~~~~~~-~-i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 53 AFSNCKSLESITFPNNLK-S-IGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTTT-TT-EEEEETSTT--E-E-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred eeeccccccccccccccc-c-cccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 344555555555543211 1 11123445566666666543 44443 234444 555555543
No 445
>PRK15453 phosphoribulokinase; Provisional
Probab=94.32 E-value=0.066 Score=52.28 Aligned_cols=27 Identities=30% Similarity=0.478 Sum_probs=23.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
...+|+|.|.+|.||||+|+++++.+.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457999999999999999999987654
No 446
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=94.31 E-value=0.059 Score=56.30 Aligned_cols=51 Identities=16% Similarity=0.161 Sum_probs=37.5
Q ss_pred CCccccchhHHHHHHHHh-------c---CCC-C----CeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 17 KKLVRIDSCLEELRSLMD-------E---GLN-D----DVRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 17 ~~~vGr~~~~~~l~~~l~-------~---~~~-~----~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
..+||.++..+.+...+. . ... + ....|.++|++|+|||++|+.++..+..
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~ 142 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNV 142 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCC
Confidence 568999999888866551 1 010 0 1357999999999999999999986543
No 447
>PRK13236 nitrogenase reductase; Reviewed
Probab=94.30 E-value=0.079 Score=53.47 Aligned_cols=48 Identities=17% Similarity=0.333 Sum_probs=33.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEcccCCCCCeEE
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEVGCNTKKVL 87 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~L 87 (693)
..|++++.|-||+||||.|..++..+++.-..+..+....+...-.++
T Consensus 5 ~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~~~~~~l 52 (296)
T PRK13236 5 NIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADSTRLM 52 (296)
T ss_pred CceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCCCccchh
Confidence 569999999999999999999998877653333344344443333333
No 448
>PLN02348 phosphoribulokinase
Probab=94.29 E-value=0.06 Score=55.25 Aligned_cols=30 Identities=27% Similarity=0.501 Sum_probs=26.3
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 39 DDVRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 39 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
+++.+|+|.|.+|.||||+|+.+.+.+...
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~ 76 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGA 76 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 367899999999999999999999877543
No 449
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.29 E-value=0.084 Score=56.44 Aligned_cols=28 Identities=21% Similarity=0.167 Sum_probs=24.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
.-+.++|+|.+|+|||||++.+++.+..
T Consensus 415 kGQR~LIvgpp~aGKTtLL~~IAn~i~~ 442 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTILQNIANAITT 442 (672)
T ss_pred cCCEeEEeCCCCCCHHHHHHHHHHHHhh
Confidence 3467899999999999999999997754
No 450
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.28 E-value=0.073 Score=50.62 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=25.5
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 39 DDVRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 39 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
.++++|++.|..|+|||||..++.++...
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~ 48 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKD 48 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 36999999999999999999999887543
No 451
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=94.26 E-value=0.1 Score=52.69 Aligned_cols=29 Identities=31% Similarity=0.486 Sum_probs=25.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
...+|+|.|.+|+||||++..+......+
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~~~~~ 61 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGMELRRR 61 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 68999999999999999999998865543
No 452
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=94.26 E-value=0.17 Score=57.91 Aligned_cols=78 Identities=19% Similarity=0.266 Sum_probs=47.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc----------C------------------CCCCeEEEEEecC
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV----------G------------------CNTKKVLLVIDDV 93 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~----------~------------------~~~~~~LlvlDdv 93 (693)
+++.|.|.+|.||||+++.+.+.+...-..+.++.... | ...+.-++|+|++
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDEa 448 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDEA 448 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEEECc
Confidence 58899999999999999999876554322233332200 0 1134578999998
Q ss_pred CCh--hhhhHHhcCCCcCCCCceEEEEeCC
Q 037483 94 VDI--KQLEYLVGKREWFGSGSRIIITSRD 121 (693)
Q Consensus 94 ~~~--~~~~~l~~~~~~~~~~~~iliTtR~ 121 (693)
.-. .+...+..... ..|++||+.-=.
T Consensus 449 sMv~~~~~~~Ll~~~~--~~~~kliLVGD~ 476 (744)
T TIGR02768 449 GMVGSRQMARVLKEAE--EAGAKVVLVGDP 476 (744)
T ss_pred ccCCHHHHHHHHHHHH--hcCCEEEEECCh
Confidence 543 33444443211 357887766533
No 453
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.24 E-value=0.088 Score=51.18 Aligned_cols=49 Identities=20% Similarity=0.150 Sum_probs=33.0
Q ss_pred HHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEc
Q 037483 28 ELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVD 77 (693)
Q Consensus 28 ~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~ 77 (693)
.|.++|..+-+ ...++.|+|.+|+|||++|.+++.....+-..+.|+..
T Consensus 13 ~LD~~l~gG~~-~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 13 ELDRKLGGGIP-FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred HHHHhhCCCCc-CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 44455543322 46899999999999999999997654333345555543
No 454
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=94.24 E-value=0.25 Score=46.08 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYD 63 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~ 63 (693)
.--|+|.|.+|+|||+|+..+..
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~ 28 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQD 28 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 34578999999999999999876
No 455
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=94.23 E-value=3.2 Score=40.33 Aligned_cols=100 Identities=13% Similarity=0.050 Sum_probs=64.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHH-------------------hcccceeEEEEccc------------------C-C
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLI-------------------SHEFEGSSFLVDEV------------------G-C 81 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~-------------------~~~f~~~~~~~~~~------------------~-~ 81 (693)
-.+...++|+.|+||.++|.+++..+ ...+++..|+.... . .
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e 85 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVE 85 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchh
Confidence 35678899999999999999998743 12345555543321 1 1
Q ss_pred CCCeEEEEEecCCChh--hhhHHhcCCCcCCCCceEEEEeCCh-HHHHHcCC-CceeeCCCC
Q 037483 82 NTKKVLLVIDDVVDIK--QLEYLVGKREWFGSGSRIIITSRDE-HLLKTHGV-DELCEPNGL 139 (693)
Q Consensus 82 ~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTtR~~-~~~~~~~~-~~~~~l~~L 139 (693)
.+++-++|+|+++... ....++..+..-.+++.+|++|.+. .+...... ...+.+.+.
T Consensus 86 ~~~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~ 147 (261)
T PRK05818 86 SNGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSK 147 (261)
T ss_pred cCCCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCCh
Confidence 2345677899997654 4677777777667777777777654 34433322 345666655
No 456
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.23 E-value=0.064 Score=52.78 Aligned_cols=52 Identities=17% Similarity=0.256 Sum_probs=40.0
Q ss_pred CCccccc---hhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 17 KKLVRID---SCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 17 ~~~vGr~---~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
+.+||-. +.+++|.+++......+.+-+.|+|.+|+|||++++++++.....
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~ 88 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQ 88 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCC
Confidence 4566643 456677777877666677889999999999999999999865433
No 457
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=94.22 E-value=0.061 Score=45.66 Aligned_cols=26 Identities=35% Similarity=0.395 Sum_probs=22.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
...+|.+.|.=|.||||+++.+++.+
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 35899999999999999999999854
No 458
>PRK04182 cytidylate kinase; Provisional
Probab=94.21 E-value=0.041 Score=51.00 Aligned_cols=23 Identities=39% Similarity=0.577 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
+|+|.|++|+||||+|+.+++++
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999999864
No 459
>PRK12338 hypothetical protein; Provisional
Probab=94.21 E-value=0.042 Score=54.94 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=23.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
.+.+|.|.|.+|+||||+|++++++.
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l 28 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTL 28 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHC
Confidence 35799999999999999999999864
No 460
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=94.19 E-value=0.06 Score=54.06 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=22.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 44 IGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 44 v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
|+|+|-||+||||.|..++..++..
T Consensus 3 ia~~gKGGVGKTTta~nLA~~La~~ 27 (290)
T CHL00072 3 LAVYGKGGIGKSTTSCNISIALARR 27 (290)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHC
Confidence 7899999999999999998877654
No 461
>COG3910 Predicted ATPase [General function prediction only]
Probab=94.18 E-value=0.23 Score=44.84 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYD 63 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~ 63 (693)
+.++..|+|..|+|||||..+++.
T Consensus 36 ~apIT~i~GENGsGKSTLLEaiA~ 59 (233)
T COG3910 36 RAPITFITGENGSGKSTLLEAIAA 59 (233)
T ss_pred cCceEEEEcCCCccHHHHHHHHHh
Confidence 567999999999999999999864
No 462
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.17 E-value=0.096 Score=56.01 Aligned_cols=50 Identities=24% Similarity=0.315 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEE
Q 037483 26 LEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLV 76 (693)
Q Consensus 26 ~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 76 (693)
+.++.++|..+-. ...++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 80 i~~LD~vLgGGi~-~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 80 FGELDRVLGGGIV-PGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred cHHHHHHhcCCcc-CCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 4455555543322 4578999999999999999999877654323344444
No 463
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=94.16 E-value=0.044 Score=50.35 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
..|.|+|++|+||||+|+.+++++
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~l 26 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQAL 26 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 358889999999999999999876
No 464
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.16 E-value=0.044 Score=46.68 Aligned_cols=21 Identities=38% Similarity=0.583 Sum_probs=19.2
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 037483 44 IGICGMGGLGKTTLVRAVYDL 64 (693)
Q Consensus 44 v~I~G~~GiGKTtLa~~~~~~ 64 (693)
|.|.|.+|+|||||.+.++..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 789999999999999999863
No 465
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=94.16 E-value=0.07 Score=48.19 Aligned_cols=44 Identities=16% Similarity=0.288 Sum_probs=30.2
Q ss_pred cccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHH
Q 037483 20 VRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYD 63 (693)
Q Consensus 20 vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~ 63 (693)
.|.++.++.+.+.+.....+....|++.|++|+|||||...+..
T Consensus 81 ~~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~ 124 (157)
T cd01858 81 FGKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRS 124 (157)
T ss_pred ccHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhc
Confidence 45555566666654322222345688999999999999999875
No 466
>PRK14531 adenylate kinase; Provisional
Probab=94.15 E-value=0.047 Score=50.78 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=21.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
+.|.|.|++|+||||+++.+++..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999998864
No 467
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.15 E-value=0.11 Score=52.51 Aligned_cols=108 Identities=26% Similarity=0.263 Sum_probs=63.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc------------------CCCCCeEEEEEecCCCh-----
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV------------------GCNTKKVLLVIDDVVDI----- 96 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~------------------~~~~~~~LlvlDdv~~~----- 96 (693)
-.|-|..||+||.|||-.|+++++.-. .++-+....+. .-..+-+|+.+|..+.-
T Consensus 383 pfRNilfyGPPGTGKTm~ArelAr~SG--lDYA~mTGGDVAPlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRn 460 (630)
T KOG0742|consen 383 PFRNILFYGPPGTGKTMFARELARHSG--LDYAIMTGGDVAPLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERN 460 (630)
T ss_pred hhhheeeeCCCCCCchHHHHHHHhhcC--CceehhcCCCccccchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhc
Confidence 368899999999999999999987422 22222111111 24567788889987421
Q ss_pred ------hh---hhHHhcCCCcCCCCc----eEEEEeCChHHHH--HcCCCceeeCCCCCHHHHHHHHHHhc
Q 037483 97 ------KQ---LEYLVGKREWFGSGS----RIIITSRDEHLLK--THGVDELCEPNGLNYDEALQLLNTKA 152 (693)
Q Consensus 97 ------~~---~~~l~~~~~~~~~~~----~iliTtR~~~~~~--~~~~~~~~~l~~L~~~ea~~l~~~~~ 152 (693)
.+ +..++- ..+..| -++.|.|..++-. ....+++++.+--.++|-..|+..+.
T Consensus 461 ktymSEaqRsaLNAlLf---RTGdqSrdivLvlAtNrpgdlDsAV~DRide~veFpLPGeEERfkll~lYl 528 (630)
T KOG0742|consen 461 KTYMSEAQRSALNALLF---RTGDQSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYL 528 (630)
T ss_pred hhhhcHHHHHHHHHHHH---HhcccccceEEEeccCCccchhHHHHhhhhheeecCCCChHHHHHHHHHHH
Confidence 11 222222 123333 2444666654322 22346677777777778777776654
No 468
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=94.12 E-value=0.052 Score=55.23 Aligned_cols=49 Identities=24% Similarity=0.346 Sum_probs=37.5
Q ss_pred ccCCCCccccchhHHHHHH-HHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 13 SETLKKLVRIDSCLEELRS-LMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 13 ~~~~~~~vGr~~~~~~l~~-~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
|..-..++|.++.++.+.- .+..+ ..-+.+.|.+|+||||+|+.++.-+
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~~~----~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAIDPG----IGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhccC----CCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 4555788999998887774 33332 2349999999999999999998754
No 469
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.12 E-value=0.087 Score=51.12 Aligned_cols=36 Identities=25% Similarity=0.286 Sum_probs=24.2
Q ss_pred hHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 25 CLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 25 ~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
..+.+...+.. ..+..|+|+||.|||+++..+...+
T Consensus 6 Q~~Ai~~~~~~-----~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 6 QREAIQSALSS-----NGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHCTS-----SE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-----CCCEEEECCCCCChHHHHHHHHHHh
Confidence 34445444442 2379999999999999888887766
No 470
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.11 E-value=0.042 Score=52.19 Aligned_cols=25 Identities=36% Similarity=0.477 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
..+|+|+|++|+||||||+.++...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4789999999999999999998854
No 471
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=94.11 E-value=0.079 Score=53.09 Aligned_cols=37 Identities=22% Similarity=0.283 Sum_probs=27.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEcc
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDE 78 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~ 78 (693)
++|+|+|-||+||||+|..++..++..-..+..++..
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~D 38 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCD 38 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeC
Confidence 5788889999999999999998876653334444333
No 472
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=94.09 E-value=0.045 Score=50.25 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
+|+|.|++|+||||+|+.++++.
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 69999999999999999998754
No 473
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=94.09 E-value=0.067 Score=52.85 Aligned_cols=28 Identities=36% Similarity=0.477 Sum_probs=25.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccc
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLISHEF 69 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f 69 (693)
++|+|.|.+|+|||||+..+...++++.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G 29 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG 29 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 5799999999999999999999888775
No 474
>PRK04328 hypothetical protein; Provisional
Probab=94.06 E-value=0.099 Score=51.25 Aligned_cols=49 Identities=12% Similarity=0.139 Sum_probs=33.7
Q ss_pred HHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEc
Q 037483 28 ELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVD 77 (693)
Q Consensus 28 ~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~ 77 (693)
.|.++|..+-. ...++.|.|.+|.|||+||.+++..-..+-..++|+..
T Consensus 11 ~LD~lL~GGip-~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 11 GMDEILYGGIP-ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred hHHHHhcCCCc-CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 44455543322 46889999999999999999987654344455666654
No 475
>PRK13695 putative NTPase; Provisional
Probab=94.06 E-value=0.084 Score=48.62 Aligned_cols=34 Identities=38% Similarity=0.630 Sum_probs=25.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhc-ccceeEEEE
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLISH-EFEGSSFLV 76 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~ 76 (693)
.|+|+|.+|+|||||++.+++.+.. .+...-|+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~g~~~ 36 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKVGGFYT 36 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 3789999999999999999887653 343333443
No 476
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.05 E-value=0.075 Score=53.11 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=24.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
..++++|+|+.|+||||++..++.....
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999887654
No 477
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.04 E-value=0.14 Score=50.98 Aligned_cols=53 Identities=32% Similarity=0.381 Sum_probs=37.6
Q ss_pred CCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 15 TLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 15 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
..+++.-.....+++.+.|...-. ..+.|.|.|..|.||||++.++.+.+...
T Consensus 102 sle~l~~~~~~~~~~~~~l~~~v~-~~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 102 SLEDLGESGSIPEEIAEFLRSAVR-GRGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp CHCCCCHTHHCHHHHHHHHHHCHH-TTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred cHhhccCchhhHHHHHHHHhhccc-cceEEEEECCCccccchHHHHHhhhcccc
Confidence 334555455555666666654311 35789999999999999999999877665
No 478
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.04 E-value=0.046 Score=52.52 Aligned_cols=23 Identities=26% Similarity=0.327 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
.|+|.|++|+||||+|+.+++++
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999998754
No 479
>PRK14532 adenylate kinase; Provisional
Probab=94.02 E-value=0.042 Score=51.36 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=19.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 037483 44 IGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 44 v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
|.|.|++|+||||+|+.++++.
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998744
No 480
>PHA02624 large T antigen; Provisional
Probab=93.96 E-value=0.098 Score=56.44 Aligned_cols=65 Identities=28% Similarity=0.357 Sum_probs=41.5
Q ss_pred hHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEc-------ccCCCCCeEEEEEecC
Q 037483 25 CLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVD-------EVGCNTKKVLLVIDDV 93 (693)
Q Consensus 25 ~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~-------~~~~~~~~~LlvlDdv 93 (693)
++.++.+.+..+.+ ..+.++++|++|.||||+|.++++.+...- +=+.. ..+...-..+.+||||
T Consensus 416 ~~~~~lk~~l~giP-Kk~~il~~GPpnTGKTtf~~sLl~~L~G~v---lsVNsPt~ks~FwL~pl~D~~~~l~dD~ 487 (647)
T PHA02624 416 VIYDILKLIVENVP-KRRYWLFKGPVNSGKTTLAAALLDLCGGKS---LNVNCPPDKLNFELGCAIDQFMVVFEDV 487 (647)
T ss_pred HHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHcCCeE---EEeeCCcchhHHHhhhhhhceEEEeeec
Confidence 33444444444333 578999999999999999999998664321 11210 1123334667889999
No 481
>PRK15115 response regulator GlrR; Provisional
Probab=93.95 E-value=0.75 Score=49.65 Aligned_cols=47 Identities=19% Similarity=0.167 Sum_probs=35.5
Q ss_pred CCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 037483 17 KKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDL 64 (693)
Q Consensus 17 ~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 64 (693)
..++|....+.++.+....... ....|.|.|.+|+|||++|+.+.+.
T Consensus 134 ~~lig~s~~~~~~~~~~~~~a~-~~~~vli~Ge~GtGk~~lA~~ih~~ 180 (444)
T PRK15115 134 EAIVTRSPLMLRLLEQARMVAQ-SDVSVLINGQSGTGKEILAQAIHNA 180 (444)
T ss_pred hcccccCHHHHHHHHHHHhhcc-CCCeEEEEcCCcchHHHHHHHHHHh
Confidence 4688888887777766554333 2345789999999999999998764
No 482
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=93.95 E-value=0.099 Score=50.33 Aligned_cols=45 Identities=29% Similarity=0.352 Sum_probs=34.1
Q ss_pred HHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccce
Q 037483 27 EELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEG 71 (693)
Q Consensus 27 ~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~ 71 (693)
.++...+.......+-+|+|.|.+|+||||+|+.+...++..++.
T Consensus 68 ~~~~~~l~~~~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~ 112 (283)
T COG1072 68 AELLRFLGTNNQQRPFIIGIAGSVAVGKSTTARILQALLSRWPES 112 (283)
T ss_pred HHHHHHhccCCCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCC
Confidence 344444443444468899999999999999999999888776653
No 483
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.93 E-value=0.047 Score=51.31 Aligned_cols=21 Identities=29% Similarity=0.248 Sum_probs=19.6
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 037483 44 IGICGMGGLGKTTLVRAVYDL 64 (693)
Q Consensus 44 v~I~G~~GiGKTtLa~~~~~~ 64 (693)
|+|.|++|+||||+|+.++++
T Consensus 2 I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999875
No 484
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=93.92 E-value=0.058 Score=55.20 Aligned_cols=47 Identities=15% Similarity=0.075 Sum_probs=39.3
Q ss_pred CCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHH
Q 037483 16 LKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYD 63 (693)
Q Consensus 16 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~ 63 (693)
.+.++|++..+.++.+.+..... ...-|.|+|.+|+||+++|+.+..
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~-~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAP-LDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHHH
Confidence 35799999999999988877544 345689999999999999999875
No 485
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.90 E-value=0.053 Score=51.09 Aligned_cols=27 Identities=37% Similarity=0.505 Sum_probs=23.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
..+++|+|.+|.|||||++.++--.+.
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~Gl~~p 59 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAGLEKP 59 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhcccCC
Confidence 468999999999999999999864444
No 486
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.90 E-value=0.12 Score=54.85 Aligned_cols=26 Identities=23% Similarity=0.347 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
.++++++|++|+||||++..++....
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999987654
No 487
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.89 E-value=0.06 Score=44.33 Aligned_cols=22 Identities=32% Similarity=0.359 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVY 62 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~ 62 (693)
...++|.|+.|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4789999999999999999975
No 488
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.89 E-value=0.24 Score=49.92 Aligned_cols=27 Identities=37% Similarity=0.453 Sum_probs=23.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
+.+.|.|..|+||||+++++++.+...
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~ 159 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKN 159 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhcc
Confidence 468899999999999999999887653
No 489
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=93.88 E-value=0.059 Score=52.19 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=19.5
Q ss_pred EEcCCCchHHHHHHHHHHHHhcc
Q 037483 46 ICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 46 I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
|.|+||+||||+++.+.+-....
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~ 23 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESN 23 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999876554
No 490
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.86 E-value=0.14 Score=48.47 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=20.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 037483 42 RMIGICGMGGLGKTTLVRAVYD 63 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~ 63 (693)
.+++|+|+.|.||||+.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 7999999999999999999984
No 491
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=93.85 E-value=0.057 Score=50.52 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYD 63 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~ 63 (693)
..+|+|+|+.|+||||.|+.+.+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 46899999999999999998865
No 492
>PLN02318 phosphoribulokinase/uridine kinase
Probab=93.84 E-value=0.081 Score=57.01 Aligned_cols=27 Identities=30% Similarity=0.691 Sum_probs=24.1
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 39 DDVRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 39 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
+++.+|+|.|.+|.||||||+.++..+
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 368999999999999999999998754
No 493
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.84 E-value=0.048 Score=50.89 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDL 64 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~ 64 (693)
.+++|.|+.|+|||||++.++..
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999999764
No 494
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=93.82 E-value=0.087 Score=46.89 Aligned_cols=26 Identities=38% Similarity=0.677 Sum_probs=22.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
++++.|.+|+||||++..++..+...
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~ 26 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRAR 26 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 37899999999999999998876544
No 495
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=93.82 E-value=0.099 Score=47.02 Aligned_cols=27 Identities=37% Similarity=0.637 Sum_probs=24.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
+++.|.|..|+|||||+..+...+..+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~ 28 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSAR 28 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 589999999999999999999887654
No 496
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=93.82 E-value=0.094 Score=48.80 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=24.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
...+++|.|.+|.||||+|+.+...+..
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999987643
No 497
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.81 E-value=0.12 Score=55.11 Aligned_cols=50 Identities=24% Similarity=0.306 Sum_probs=34.5
Q ss_pred HHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEE
Q 037483 26 LEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLV 76 (693)
Q Consensus 26 ~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 76 (693)
+.++.+.|..+-. ...++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 66 i~~LD~~LgGGi~-~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 66 IGELDRVLGGGLV-PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred cHHHHHHhcCCcc-CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3455555554322 3569999999999999999999987754333344544
No 498
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=93.78 E-value=0.13 Score=50.34 Aligned_cols=27 Identities=19% Similarity=0.142 Sum_probs=22.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
+-+.++|.|-+|+|||+|+..++++..
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~ 94 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAG 94 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhh
Confidence 356789999999999999999887653
No 499
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=93.78 E-value=0.12 Score=49.72 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYD 63 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~ 63 (693)
..+++|.|+.|.|||||.+.+.-
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 37899999999999999999975
No 500
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=93.78 E-value=0.11 Score=49.92 Aligned_cols=61 Identities=20% Similarity=0.208 Sum_probs=43.3
Q ss_pred cCCCCccccchhHH---HHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEE
Q 037483 14 ETLKKLVRIDSCLE---ELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFL 75 (693)
Q Consensus 14 ~~~~~~vGr~~~~~---~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 75 (693)
.....|||.+...+ -+.+++....- ..|.|.+.|++|.|||+||.++.+.+...-++.-.+
T Consensus 35 ~~~~g~vGQ~~AReAagiivdlik~Kkm-aGravLlaGppgtGKTAlAlaisqELG~kvPFcpmv 98 (456)
T KOG1942|consen 35 EVAAGFVGQENAREAAGIIVDLIKSKKM-AGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMV 98 (456)
T ss_pred ecccccccchhhhhhhhHHHHHHHhhhc-cCcEEEEecCCCCchhHHHHHHHHHhCCCCCccccc
Confidence 45678999875544 34455544222 458899999999999999999999876665544433
Done!