Query 037483
Match_columns 693
No_of_seqs 759 out of 4493
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 22:04:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037483.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037483hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 7.1E-39 2.4E-43 351.6 18.1 265 20-294 131-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 1.6E-34 5.5E-39 351.7 18.7 272 10-293 117-452 (1249)
3 1z6t_A APAF-1, apoptotic prote 100.0 5.2E-33 1.8E-37 310.1 18.4 267 11-290 118-449 (591)
4 1vt4_I APAF-1 related killer D 100.0 4.8E-33 1.7E-37 307.9 14.2 245 17-286 128-436 (1221)
5 4fcg_A Uncharacterized protein 99.9 2.7E-23 9.1E-28 213.1 16.6 220 321-570 88-309 (328)
6 1ogq_A PGIP-2, polygalacturona 99.9 3.7E-23 1.3E-27 210.8 14.2 220 329-573 67-302 (313)
7 4fcg_A Uncharacterized protein 99.9 1.8E-22 6.3E-27 206.9 15.8 197 337-573 80-288 (328)
8 3rgz_A Protein brassinosteroid 99.9 5.8E-22 2E-26 227.3 18.3 244 329-573 409-715 (768)
9 1ozn_A Reticulon 4 receptor; N 99.9 8.5E-21 2.9E-25 190.9 21.4 223 326-586 22-252 (285)
10 3zyj_A Leucine-rich repeat-con 99.9 1.3E-20 4.6E-25 201.8 23.2 224 338-586 64-306 (440)
11 3zyi_A Leucine-rich repeat-con 99.9 1E-20 3.4E-25 203.6 22.1 234 326-586 65-317 (452)
12 1p9a_G Platelet glycoprotein I 99.9 3.9E-20 1.3E-24 185.8 23.2 185 326-551 21-207 (290)
13 3rgz_A Protein brassinosteroid 99.9 3.3E-21 1.1E-25 221.0 17.2 239 337-625 393-723 (768)
14 1xku_A Decorin; proteoglycan, 99.9 7.7E-21 2.6E-25 195.6 17.5 200 334-551 72-275 (330)
15 2z66_A Variable lymphocyte rec 99.8 1.3E-20 4.4E-25 191.7 17.5 225 327-585 40-274 (306)
16 1ogq_A PGIP-2, polygalacturona 99.8 1.2E-21 4E-26 199.7 9.5 211 338-572 50-278 (313)
17 3zyj_A Leucine-rich repeat-con 99.8 3.3E-20 1.1E-24 198.8 20.8 201 327-551 76-291 (440)
18 3o6n_A APL1; leucine-rich repe 99.8 1.3E-20 4.3E-25 198.8 17.1 236 333-576 88-353 (390)
19 3v47_A TOLL-like receptor 5B a 99.8 2.5E-20 8.6E-25 201.0 19.2 86 486-572 318-405 (455)
20 2ft3_A Biglycan; proteoglycan, 99.8 3.4E-20 1.2E-24 190.9 18.9 201 333-552 73-277 (332)
21 3zyi_A Leucine-rich repeat-con 99.8 3.9E-20 1.3E-24 198.9 20.1 202 326-551 86-302 (452)
22 3oja_B Anopheles plasmodium-re 99.8 1.9E-20 6.6E-25 208.5 17.1 236 333-576 94-359 (597)
23 2z66_A Variable lymphocyte rec 99.8 1.3E-20 4.5E-25 191.7 14.0 210 326-573 18-234 (306)
24 1ozn_A Reticulon 4 receptor; N 99.8 9.3E-20 3.2E-24 183.3 19.4 191 326-552 43-238 (285)
25 4eco_A Uncharacterized protein 99.8 1.5E-20 5.1E-25 210.6 14.5 245 321-571 256-545 (636)
26 4ecn_A Leucine-rich repeat pro 99.8 2.7E-20 9.1E-25 212.2 16.6 244 322-572 499-786 (876)
27 2o6q_A Variable lymphocyte rec 99.8 2.4E-19 8.1E-24 178.6 21.4 188 326-551 27-217 (270)
28 3v47_A TOLL-like receptor 5B a 99.8 7.8E-20 2.7E-24 197.1 18.9 85 487-572 295-381 (455)
29 2id5_A Lingo-1, leucine rich r 99.8 5.8E-20 2E-24 199.3 17.7 238 333-573 51-331 (477)
30 3t6q_A CD180 antigen; protein- 99.8 1.2E-19 4.2E-24 203.1 20.3 257 327-585 290-573 (606)
31 2id5_A Lingo-1, leucine rich r 99.8 6.6E-20 2.3E-24 198.9 17.3 243 325-573 21-307 (477)
32 4ecn_A Leucine-rich repeat pro 99.8 1.1E-20 3.9E-25 215.1 11.7 173 354-552 440-657 (876)
33 2z62_A TOLL-like receptor 4, v 99.8 9.2E-20 3.2E-24 182.4 16.9 199 327-551 19-236 (276)
34 3o6n_A APL1; leucine-rich repe 99.8 6.2E-20 2.1E-24 193.5 15.8 234 327-572 57-305 (390)
35 4eco_A Uncharacterized protein 99.8 4.4E-20 1.5E-24 206.7 15.5 232 321-572 312-576 (636)
36 1xku_A Decorin; proteoglycan, 99.8 3.8E-19 1.3E-23 182.9 20.0 205 326-572 42-250 (330)
37 2z7x_B TOLL-like receptor 1, v 99.8 6.7E-19 2.3E-23 193.2 21.5 71 516-586 421-496 (520)
38 1p9a_G Platelet glycoprotein I 99.8 5.3E-19 1.8E-23 177.6 18.8 212 334-586 6-222 (290)
39 3oja_B Anopheles plasmodium-re 99.8 1.4E-19 4.7E-24 201.6 15.6 240 327-573 63-335 (597)
40 3vq2_A TLR4, TOLL-like recepto 99.8 2.2E-19 7.5E-24 201.0 17.2 204 334-572 346-555 (606)
41 1wwl_A Monocyte differentiatio 99.8 5E-20 1.7E-24 187.6 10.6 201 336-572 93-306 (312)
42 2ft3_A Biglycan; proteoglycan, 99.8 7.9E-19 2.7E-23 180.6 19.7 224 326-573 44-275 (332)
43 3t6q_A CD180 antigen; protein- 99.8 4.1E-19 1.4E-23 198.9 18.8 223 327-572 266-510 (606)
44 2xwt_C Thyrotropin receptor; s 99.8 1.3E-19 4.5E-24 177.0 12.6 204 323-569 19-233 (239)
45 4fmz_A Internalin; leucine ric 99.8 5.6E-19 1.9E-23 183.1 17.8 207 334-573 128-344 (347)
46 2z80_A TOLL-like receptor 2, v 99.8 3.3E-20 1.1E-24 192.8 7.8 222 327-572 64-311 (353)
47 2o6q_A Variable lymphocyte rec 99.8 2.4E-18 8.1E-23 171.4 20.8 207 339-585 17-232 (270)
48 4fmz_A Internalin; leucine ric 99.8 1.2E-18 4.2E-23 180.5 19.2 213 334-573 84-298 (347)
49 3o53_A Protein LRIM1, AGAP0063 99.8 2.2E-19 7.7E-24 183.3 13.1 207 336-575 32-250 (317)
50 1h6u_A Internalin H; cell adhe 99.8 4.6E-19 1.6E-23 179.9 15.3 171 334-551 59-229 (308)
51 1h6u_A Internalin H; cell adhe 99.8 9.6E-19 3.3E-23 177.5 17.7 194 333-574 36-229 (308)
52 3vq2_A TLR4, TOLL-like recepto 99.8 2.7E-19 9.2E-24 200.3 14.0 216 333-575 302-534 (606)
53 3oja_A Leucine-rich immune mol 99.8 3.4E-19 1.2E-23 192.6 14.2 209 338-575 34-250 (487)
54 2z80_A TOLL-like receptor 2, v 99.8 3.3E-19 1.1E-23 185.1 13.3 188 325-551 41-234 (353)
55 3rfs_A Internalin B, repeat mo 99.8 2.5E-18 8.4E-23 171.4 18.7 181 333-552 36-218 (272)
56 3oja_A Leucine-rich immune mol 99.8 4.8E-19 1.6E-23 191.4 14.5 194 327-552 46-250 (487)
57 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 6.5E-18 2.2E-22 187.0 23.5 86 488-576 425-511 (562)
58 3o53_A Protein LRIM1, AGAP0063 99.8 4.5E-19 1.5E-23 181.0 12.8 194 327-552 46-250 (317)
59 3j0a_A TOLL-like receptor 5; m 99.8 1.8E-18 6.2E-23 200.4 17.8 125 331-455 41-184 (844)
60 1h6t_A Internalin B; cell adhe 99.8 2.3E-18 7.8E-23 173.1 15.4 172 333-551 41-212 (291)
61 2z81_A CD282 antigen, TOLL-lik 99.8 3.7E-18 1.3E-22 188.7 18.3 80 333-412 69-151 (549)
62 1ziw_A TOLL-like receptor 3; i 99.8 3.8E-18 1.3E-22 193.7 18.1 218 339-572 382-619 (680)
63 2z63_A TOLL-like receptor 4, v 99.8 2.6E-18 8.9E-23 190.9 15.7 67 333-399 95-163 (570)
64 1wwl_A Monocyte differentiatio 99.8 5.1E-20 1.7E-24 187.6 1.7 200 340-575 65-287 (312)
65 1ziw_A TOLL-like receptor 3; i 99.8 1E-17 3.4E-22 190.2 20.7 221 333-575 324-597 (680)
66 3m19_A Variable lymphocyte rec 99.8 1.5E-17 5.3E-22 163.5 19.3 175 338-551 14-191 (251)
67 3bz5_A Internalin-J, INLJ; leu 99.8 2.1E-17 7.3E-22 176.9 21.8 173 334-547 81-262 (457)
68 2z7x_B TOLL-like receptor 1, v 99.8 3.4E-18 1.2E-22 187.6 15.9 245 327-574 33-411 (520)
69 3g06_A SSPH2 (leucine-rich rep 99.8 5.2E-17 1.8E-21 179.1 25.1 223 326-575 51-297 (622)
70 4glp_A Monocyte differentiatio 99.8 1.6E-18 5.3E-23 176.5 11.9 198 338-572 91-304 (310)
71 3rfs_A Internalin B, repeat mo 99.8 8.4E-18 2.9E-22 167.5 15.6 178 333-554 58-237 (272)
72 1o6v_A Internalin A; bacterial 99.8 8.8E-18 3E-22 181.3 16.9 121 334-460 86-214 (466)
73 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 2E-17 7E-22 183.0 19.5 86 488-574 350-440 (562)
74 2z63_A TOLL-like receptor 4, v 99.7 4.8E-18 1.6E-22 188.8 14.2 217 329-572 296-528 (570)
75 3bz5_A Internalin-J, INLJ; leu 99.7 3E-17 1E-21 175.7 19.7 201 327-562 54-257 (457)
76 3m19_A Variable lymphocyte rec 99.7 5.1E-17 1.8E-21 159.7 19.7 186 362-585 14-206 (251)
77 2xwt_C Thyrotropin receptor; s 99.7 6.7E-18 2.3E-22 164.9 13.0 184 326-550 42-237 (239)
78 3j0a_A TOLL-like receptor 5; m 99.7 3.4E-17 1.2E-21 189.7 21.1 245 325-573 14-349 (844)
79 1o6v_A Internalin A; bacterial 99.7 2.2E-17 7.4E-22 178.2 17.8 204 333-572 172-385 (466)
80 2z62_A TOLL-like receptor 4, v 99.7 1.3E-17 4.3E-22 166.8 13.6 198 351-572 19-234 (276)
81 1m9s_A Internalin B; cell inva 99.7 2.2E-17 7.5E-22 181.9 15.5 173 333-552 38-210 (605)
82 2z81_A CD282 antigen, TOLL-lik 99.7 8.4E-18 2.9E-22 185.9 11.1 190 326-552 16-209 (549)
83 1jl5_A Outer protein YOPM; leu 99.7 2.3E-16 8E-21 168.7 20.4 208 326-552 142-370 (454)
84 1jl5_A Outer protein YOPM; leu 99.7 4E-17 1.4E-21 174.6 13.7 130 325-459 21-167 (454)
85 1xeu_A Internalin C; cellular 99.7 2E-17 6.8E-22 163.5 9.8 168 337-552 18-185 (263)
86 2v70_A SLIT-2, SLIT homolog 2 99.7 3.5E-16 1.2E-20 150.1 18.2 150 365-551 14-165 (220)
87 4ezg_A Putative uncharacterize 99.7 2.6E-17 8.9E-22 155.3 9.4 150 360-551 42-193 (197)
88 1h6t_A Internalin B; cell adhe 99.7 8.2E-17 2.8E-21 161.7 13.4 170 358-573 42-211 (291)
89 3cvr_A Invasion plasmid antige 99.7 2.9E-16 9.9E-21 171.0 18.2 166 326-551 70-242 (571)
90 2v9t_B SLIT homolog 2 protein 99.7 7.3E-16 2.5E-20 147.9 18.5 149 365-551 14-164 (220)
91 2fna_A Conserved hypothetical 99.7 5.9E-16 2E-20 160.9 18.7 255 10-286 6-356 (357)
92 3g06_A SSPH2 (leucine-rich rep 99.7 1E-15 3.4E-20 168.9 21.0 192 336-552 99-297 (622)
93 3cvr_A Invasion plasmid antige 99.7 3.2E-16 1.1E-20 170.6 16.5 177 339-575 60-243 (571)
94 2qen_A Walker-type ATPase; unk 99.7 5.5E-16 1.9E-20 160.7 17.0 255 10-287 5-349 (350)
95 3e6j_A Variable lymphocyte rec 99.7 8.6E-16 2.9E-20 148.5 16.8 150 363-551 20-171 (229)
96 2ca6_A RAN GTPase-activating p 99.7 4.7E-18 1.6E-22 178.8 0.2 167 359-552 91-287 (386)
97 4glp_A Monocyte differentiatio 99.7 1.1E-16 3.9E-21 162.7 9.8 206 338-575 64-285 (310)
98 4g8a_A TOLL-like receptor 4; l 99.7 9.7E-16 3.3E-20 172.5 18.4 218 335-586 368-594 (635)
99 2ca6_A RAN GTPase-activating p 99.7 1.6E-17 5.4E-22 174.7 3.3 193 333-552 89-316 (386)
100 1m9s_A Internalin B; cell inva 99.7 3.9E-16 1.3E-20 172.0 14.4 170 358-573 39-208 (605)
101 2ast_B S-phase kinase-associat 99.7 7.2E-17 2.5E-21 166.4 7.1 189 328-549 83-282 (336)
102 1xeu_A Internalin C; cellular 99.6 3.6E-16 1.2E-20 154.4 10.6 168 360-574 17-184 (263)
103 4g8a_A TOLL-like receptor 4; l 99.6 9.6E-16 3.3E-20 172.5 15.4 188 326-551 42-236 (635)
104 4ezg_A Putative uncharacterize 99.6 3.3E-16 1.1E-20 147.7 9.6 154 333-529 39-194 (197)
105 2o6s_A Variable lymphocyte rec 99.6 1E-15 3.6E-20 145.7 12.9 147 363-551 29-177 (208)
106 2xot_A Amphoterin-induced prot 99.6 1.8E-15 6.1E-20 157.2 13.8 171 341-551 21-201 (361)
107 2ast_B S-phase kinase-associat 99.6 5.2E-17 1.8E-21 167.5 2.0 203 334-572 64-282 (336)
108 2xot_A Amphoterin-induced prot 99.6 2.3E-15 7.8E-20 156.4 14.2 176 364-577 20-204 (361)
109 1dce_A Protein (RAB geranylger 99.6 1.9E-17 6.5E-22 181.3 -1.7 188 334-555 345-549 (567)
110 2v9t_B SLIT homolog 2 protein 99.6 7.8E-15 2.7E-19 140.7 16.5 150 341-529 14-165 (220)
111 1dce_A Protein (RAB geranylger 99.6 1.6E-17 5.5E-22 181.9 -3.0 190 359-575 346-546 (567)
112 4ay9_X Follicle-stimulating ho 99.6 3E-15 1E-19 154.8 12.9 203 326-550 20-234 (350)
113 2o6s_A Variable lymphocyte rec 99.6 2.1E-14 7E-19 136.7 17.5 151 364-552 9-161 (208)
114 2v70_A SLIT-2, SLIT homolog 2 99.6 1.3E-14 4.6E-19 139.0 15.9 150 341-529 14-166 (220)
115 3goz_A Leucine-rich repeat-con 99.6 4.3E-16 1.5E-20 162.1 4.8 114 336-458 20-151 (362)
116 3e6j_A Variable lymphocyte rec 99.6 2.4E-14 8.3E-19 138.2 15.8 141 326-503 30-171 (229)
117 4ay9_X Follicle-stimulating ho 99.6 1.8E-14 6.2E-19 149.0 15.5 203 321-550 37-257 (350)
118 3goz_A Leucine-rich repeat-con 99.6 3.4E-16 1.2E-20 162.8 1.6 216 333-575 45-297 (362)
119 2ell_A Acidic leucine-rich nuc 99.5 9.9E-15 3.4E-19 133.7 8.5 40 511-550 115-158 (168)
120 2wfh_A SLIT homolog 2 protein 99.5 1.5E-13 5.2E-18 128.6 16.5 107 422-551 31-138 (193)
121 1w5s_A Origin recognition comp 99.5 7.5E-14 2.6E-18 148.1 16.0 250 13-271 18-371 (412)
122 2ell_A Acidic leucine-rich nuc 99.5 1.7E-14 5.8E-19 132.2 9.5 137 360-534 22-165 (168)
123 2je0_A Acidic leucine-rich nuc 99.5 2.1E-14 7E-19 128.7 6.9 107 419-548 39-149 (149)
124 1w8a_A SLIT protein; signaling 99.5 2.3E-13 7.8E-18 127.4 13.9 106 423-551 30-138 (192)
125 4b8c_D Glucose-repressible alc 99.5 7.1E-15 2.4E-19 166.2 3.8 182 326-551 212-403 (727)
126 1w8a_A SLIT protein; signaling 99.5 1.7E-13 5.9E-18 128.2 12.7 128 365-529 11-139 (192)
127 1z7x_W Ribonuclease inhibitor; 99.5 6.2E-15 2.1E-19 159.0 2.3 63 489-551 254-325 (461)
128 1z7x_W Ribonuclease inhibitor; 99.5 3.7E-15 1.3E-19 160.7 0.5 188 337-551 198-410 (461)
129 1a9n_A U2A', U2A'; complex (nu 99.5 5.3E-14 1.8E-18 129.8 7.9 62 488-551 85-152 (176)
130 2wfh_A SLIT homolog 2 protein 99.5 4.8E-13 1.6E-17 125.2 13.6 125 365-529 13-139 (193)
131 2je0_A Acidic leucine-rich nuc 99.5 6.4E-14 2.2E-18 125.4 6.8 132 336-500 15-149 (149)
132 4b8c_D Glucose-repressible alc 99.5 1.1E-13 3.7E-18 156.5 10.2 174 338-551 173-353 (727)
133 3sb4_A Hypothetical leucine ri 99.4 7.4E-13 2.5E-17 135.6 12.8 78 337-415 48-154 (329)
134 2o6r_A Variable lymphocyte rec 99.4 5E-12 1.7E-16 116.7 15.0 108 422-552 28-137 (177)
135 2qby_B CDC6 homolog 3, cell di 99.4 1.2E-11 4.2E-16 129.6 19.5 244 15-271 18-339 (384)
136 1njg_A DNA polymerase III subu 99.4 8.7E-12 3E-16 121.8 16.8 171 13-187 19-231 (250)
137 1a9n_A U2A', U2A'; complex (nu 99.4 1.4E-12 4.8E-17 120.2 9.1 131 418-575 15-153 (176)
138 2o6r_A Variable lymphocyte rec 99.4 1.1E-11 3.7E-16 114.4 14.9 128 364-530 9-138 (177)
139 2qby_A CDC6 homolog 1, cell di 99.3 1.2E-11 4.1E-16 129.7 17.0 249 13-271 16-348 (386)
140 1ds9_A Outer arm dynein; leuci 99.3 6.5E-15 2.2E-19 138.9 -8.6 102 418-545 66-180 (198)
141 1fnn_A CDC6P, cell division co 99.3 4.1E-11 1.4E-15 125.8 19.3 252 14-272 14-352 (389)
142 2v1u_A Cell division control p 99.3 6.1E-11 2.1E-15 124.4 19.6 247 14-271 16-351 (387)
143 1ds9_A Outer arm dynein; leuci 99.3 1.4E-14 4.8E-19 136.6 -8.0 134 385-552 18-153 (198)
144 3g39_A Variable lymphocyte rec 99.3 2.4E-11 8.1E-16 111.0 12.7 103 424-551 11-114 (170)
145 2r9u_A Variable lymphocyte rec 99.3 3.3E-11 1.1E-15 110.4 12.8 102 425-552 15-118 (174)
146 2chg_A Replication factor C sm 99.3 6.2E-11 2.1E-15 113.9 15.3 168 13-185 13-205 (226)
147 3ogk_B Coronatine-insensitive 99.2 8.5E-13 2.9E-17 147.1 -0.1 199 340-548 140-351 (592)
148 3ogk_B Coronatine-insensitive 99.2 2.3E-13 7.7E-18 151.7 -4.8 200 337-548 191-412 (592)
149 3g39_A Variable lymphocyte rec 99.2 2.3E-10 8E-15 104.4 12.6 87 422-531 30-117 (170)
150 2r9u_A Variable lymphocyte rec 99.2 2.6E-10 8.8E-15 104.5 12.6 88 422-533 33-122 (174)
151 3un9_A NLR family member X1; l 99.1 1.4E-12 4.9E-17 135.0 -3.5 188 337-551 71-282 (372)
152 1sxj_B Activator 1 37 kDa subu 99.1 7.2E-10 2.4E-14 113.0 16.5 166 14-184 18-210 (323)
153 2p1m_B Transport inhibitor res 99.1 1.1E-12 3.9E-17 146.1 -7.3 59 489-547 336-405 (594)
154 3sb4_A Hypothetical leucine ri 99.1 1.3E-10 4.4E-15 118.8 8.0 202 337-549 24-284 (329)
155 2p1m_B Transport inhibitor res 99.1 3.8E-11 1.3E-15 133.8 3.1 202 336-548 128-347 (594)
156 3un9_A NLR family member X1; l 99.0 6.1E-12 2.1E-16 130.2 -4.0 161 361-551 71-251 (372)
157 1iqp_A RFCS; clamp loader, ext 99.0 3.3E-09 1.1E-13 108.2 16.4 168 13-185 21-213 (327)
158 4fdw_A Leucine rich hypothetic 99.0 5.6E-09 1.9E-13 109.0 17.5 192 334-551 154-357 (401)
159 2ifg_A High affinity nerve gro 99.0 1.1E-09 3.7E-14 112.9 11.4 101 427-551 13-115 (347)
160 1jr3_A DNA polymerase III subu 98.9 1E-08 3.5E-13 106.7 15.9 167 15-185 14-222 (373)
161 1hqc_A RUVB; extended AAA-ATPa 98.9 1.1E-08 3.9E-13 104.1 15.2 242 14-275 9-302 (324)
162 4fdw_A Leucine rich hypothetic 98.8 6.3E-08 2.2E-12 101.1 17.6 187 333-549 131-333 (401)
163 3bos_A Putative DNA replicatio 98.8 1.3E-08 4.6E-13 98.6 11.7 167 14-185 25-218 (242)
164 2chq_A Replication factor C sm 98.8 8E-08 2.7E-12 97.5 18.0 166 14-184 14-204 (319)
165 2ifg_A High affinity nerve gro 98.8 1.4E-08 4.6E-13 104.6 10.7 104 342-459 12-117 (347)
166 1sxj_A Activator 1 95 kDa subu 98.7 1.7E-07 5.7E-12 101.4 15.7 163 14-183 36-252 (516)
167 3pfi_A Holliday junction ATP-d 98.7 8.2E-08 2.8E-12 98.3 12.6 241 15-277 27-319 (338)
168 1jbk_A CLPB protein; beta barr 98.7 3.3E-08 1.1E-12 92.0 8.9 130 14-148 19-194 (195)
169 1d2n_A N-ethylmaleimide-sensit 98.7 1.8E-07 6E-12 92.5 14.4 152 16-176 32-229 (272)
170 2ra8_A Uncharacterized protein 98.7 2.7E-09 9.1E-14 109.4 0.5 61 333-395 134-203 (362)
171 1sxj_D Activator 1 41 kDa subu 98.6 1.3E-06 4.3E-11 90.0 19.2 163 13-183 33-234 (353)
172 3h4m_A Proteasome-activating n 98.6 8.7E-08 3E-12 95.5 9.5 166 12-183 12-230 (285)
173 2ra8_A Uncharacterized protein 98.6 1.2E-08 4.2E-13 104.5 2.3 164 356-551 133-319 (362)
174 3d8b_A Fidgetin-like protein 1 98.5 1.3E-06 4.5E-11 89.7 15.4 167 12-185 79-296 (357)
175 2qz4_A Paraplegin; AAA+, SPG7, 98.5 6.7E-07 2.3E-11 87.7 12.4 166 15-184 4-222 (262)
176 3u61_B DNA polymerase accessor 98.5 7.5E-07 2.6E-11 90.5 13.1 160 13-181 22-213 (324)
177 1io0_A Tropomodulin; LRR prote 98.5 1.7E-08 5.7E-13 93.3 0.4 118 416-551 30-163 (185)
178 3uk6_A RUVB-like 2; hexameric 98.5 7.5E-07 2.6E-11 92.3 12.5 162 16-184 43-303 (368)
179 3b9p_A CG5977-PA, isoform A; A 98.5 7.5E-07 2.6E-11 89.2 11.9 178 1-185 3-234 (297)
180 3pvs_A Replication-associated 98.5 3.2E-07 1.1E-11 96.7 9.4 165 13-184 22-215 (447)
181 2qp9_X Vacuolar protein sortin 98.4 1.2E-06 4.2E-11 89.7 12.2 166 13-185 47-262 (355)
182 3eie_A Vacuolar protein sortin 98.4 1.9E-06 6.6E-11 87.1 13.5 167 12-185 13-229 (322)
183 1sxj_E Activator 1 40 kDa subu 98.4 1.3E-06 4.3E-11 90.1 12.3 167 14-184 11-237 (354)
184 2z4s_A Chromosomal replication 98.4 6.6E-07 2.3E-11 94.4 10.2 163 17-183 105-305 (440)
185 3syl_A Protein CBBX; photosynt 98.4 1.2E-06 4.1E-11 88.3 11.7 134 18-153 32-218 (309)
186 1xwi_A SKD1 protein; VPS4B, AA 98.4 3.3E-06 1.1E-10 85.2 14.4 165 14-185 9-224 (322)
187 4fs7_A Uncharacterized protein 98.4 7.9E-06 2.7E-10 85.4 17.0 61 486-549 315-376 (394)
188 1a5t_A Delta prime, HOLB; zinc 98.4 4.1E-06 1.4E-10 85.2 14.2 153 23-184 8-205 (334)
189 1l8q_A Chromosomal replication 98.4 1.4E-06 4.9E-11 88.3 10.8 162 15-181 9-205 (324)
190 2zan_A Vacuolar protein sortin 98.4 4.6E-06 1.6E-10 88.2 14.9 167 12-185 129-346 (444)
191 1io0_A Tropomodulin; LRR prote 98.3 7.8E-08 2.7E-12 88.7 1.0 40 418-457 89-135 (185)
192 2p65_A Hypothetical protein PF 98.3 9.9E-07 3.4E-11 81.4 8.2 50 15-67 20-69 (187)
193 3vfd_A Spastin; ATPase, microt 98.3 6E-06 2E-10 85.9 14.9 166 13-185 111-327 (389)
194 4gt6_A Cell surface protein; l 98.3 2E-05 6.7E-10 82.3 18.8 63 486-551 306-369 (394)
195 4fs7_A Uncharacterized protein 98.3 1.4E-05 4.9E-10 83.4 17.6 201 356-564 156-371 (394)
196 3te6_A Regulatory protein SIR3 98.3 2.2E-06 7.5E-11 85.1 10.2 134 18-152 21-211 (318)
197 1sxj_C Activator 1 40 kDa subu 98.3 1.8E-05 6.1E-10 80.8 16.5 162 15-181 23-209 (340)
198 3n70_A Transport activator; si 98.2 1.4E-06 4.7E-11 76.7 5.5 102 17-121 1-115 (145)
199 1in4_A RUVB, holliday junction 98.1 1.5E-05 5.2E-10 80.9 12.3 244 15-278 23-317 (334)
200 3cf0_A Transitional endoplasmi 98.1 1.2E-05 4E-10 80.5 11.3 159 14-179 12-223 (301)
201 1ofh_A ATP-dependent HSL prote 98.1 1.4E-05 4.9E-10 80.3 11.5 130 17-151 15-214 (310)
202 4b4t_J 26S protease regulatory 98.0 4.4E-05 1.5E-09 77.8 13.8 155 16-177 147-354 (405)
203 3rw6_A Nuclear RNA export fact 98.0 1.7E-06 6E-11 83.7 3.1 81 367-459 148-234 (267)
204 3rw6_A Nuclear RNA export fact 98.0 1.7E-06 5.9E-11 83.8 2.3 55 488-545 193-257 (267)
205 3pxg_A Negative regulator of g 98.0 4.2E-05 1.5E-09 81.3 12.7 131 15-152 178-338 (468)
206 2bjv_A PSP operon transcriptio 98.0 5.1E-05 1.7E-09 74.3 12.4 49 17-66 6-54 (265)
207 4b4t_H 26S protease regulatory 98.0 3.9E-05 1.3E-09 79.2 11.6 155 16-177 208-415 (467)
208 1qvr_A CLPB protein; coiled co 97.9 2.3E-05 7.8E-10 90.1 10.8 132 15-151 168-344 (854)
209 1r6b_X CLPA protein; AAA+, N-t 97.9 7.6E-05 2.6E-09 84.9 14.4 132 16-152 185-362 (758)
210 1lv7_A FTSH; alpha/beta domain 97.9 3.7E-05 1.3E-09 74.9 10.2 165 13-183 8-224 (257)
211 4b4t_L 26S protease subunit RP 97.9 4E-05 1.4E-09 79.4 10.6 156 15-177 179-387 (437)
212 3hu3_A Transitional endoplasmi 97.9 1.5E-05 5.1E-10 84.8 7.5 161 17-184 204-415 (489)
213 4b4t_K 26S protease regulatory 97.9 3.3E-05 1.1E-09 79.9 9.4 155 16-177 171-379 (428)
214 4gt6_A Cell surface protein; l 97.8 0.00046 1.6E-08 71.8 17.9 78 333-412 82-163 (394)
215 2r62_A Cell division protease 97.8 7.4E-06 2.5E-10 80.5 3.9 139 14-152 8-196 (268)
216 3ec2_A DNA replication protein 97.8 7E-06 2.4E-10 75.2 3.2 105 17-121 10-142 (180)
217 2r44_A Uncharacterized protein 97.8 0.00012 4.2E-09 74.2 12.7 132 15-153 25-199 (331)
218 2gno_A DNA polymerase III, gam 97.8 4.3E-05 1.5E-09 76.0 8.6 128 21-152 1-152 (305)
219 2kjq_A DNAA-related protein; s 97.8 2.1E-05 7E-10 69.3 5.6 81 41-121 36-124 (149)
220 4b4t_M 26S protease regulatory 97.8 8.5E-05 2.9E-09 76.9 10.4 159 12-177 176-387 (434)
221 4fcw_A Chaperone protein CLPB; 97.8 0.00017 5.7E-09 72.5 12.2 52 16-67 16-73 (311)
222 3co5_A Putative two-component 97.7 4.7E-06 1.6E-10 73.1 -0.1 100 17-121 4-115 (143)
223 1ojl_A Transcriptional regulat 97.7 7.7E-05 2.6E-09 74.4 8.7 48 17-65 2-49 (304)
224 3pxi_A Negative regulator of g 97.7 0.00017 6E-09 81.8 12.7 131 15-152 178-338 (758)
225 3e4g_A ATP synthase subunit S, 97.7 5.1E-06 1.8E-10 74.4 -0.2 34 423-456 62-96 (176)
226 4b4t_I 26S protease regulatory 97.7 8E-05 2.7E-09 76.1 8.5 157 14-177 179-388 (437)
227 3t15_A Ribulose bisphosphate c 97.7 0.00014 4.8E-09 72.1 10.2 109 40-153 35-199 (293)
228 2ce7_A Cell division protein F 97.7 0.00016 5.5E-09 76.1 10.7 157 15-177 14-221 (476)
229 4h09_A Hypothetical leucine ri 97.7 0.0021 7E-08 66.5 19.1 62 486-549 258-320 (379)
230 3pxi_A Negative regulator of g 97.6 0.00016 5.3E-09 82.2 11.0 136 17-152 491-675 (758)
231 3e4g_A ATP synthase subunit S, 97.5 9.2E-06 3.2E-10 72.8 -0.7 83 445-551 61-151 (176)
232 1ixz_A ATP-dependent metallopr 97.5 0.0007 2.4E-08 65.6 11.5 137 13-152 12-199 (254)
233 2dhr_A FTSH; AAA+ protein, hex 97.4 0.00085 2.9E-08 71.1 12.1 160 12-177 26-236 (499)
234 1tue_A Replication protein E1; 97.4 0.00011 3.8E-09 66.9 3.9 66 25-95 44-114 (212)
235 2x8a_A Nuclear valosin-contain 97.3 0.0011 3.8E-08 64.8 11.0 134 16-152 9-191 (274)
236 1iy2_A ATP-dependent metallopr 97.3 0.0021 7.1E-08 63.2 13.0 138 12-152 35-223 (278)
237 2c9o_A RUVB-like 1; hexameric 97.3 0.00022 7.6E-09 75.6 6.1 79 16-95 36-137 (456)
238 3cf2_A TER ATPase, transitiona 97.3 0.0004 1.4E-08 77.6 8.1 155 17-178 204-408 (806)
239 3m6a_A ATP-dependent protease 97.3 0.0016 5.5E-08 70.4 12.5 132 18-152 82-266 (543)
240 1r6b_X CLPA protein; AAA+, N-t 97.1 0.0027 9.1E-08 72.2 12.4 50 17-66 458-513 (758)
241 3rfe_A Platelet glycoprotein I 97.0 0.0023 7.8E-08 54.4 8.6 70 494-585 11-81 (130)
242 2w58_A DNAI, primosome compone 97.0 0.0015 5.2E-08 60.6 8.0 107 15-121 23-158 (202)
243 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00017 5.6E-09 65.9 0.9 115 419-551 38-169 (197)
244 4h09_A Hypothetical leucine ri 97.0 0.0093 3.2E-07 61.4 14.4 62 486-549 281-343 (379)
245 1qvr_A CLPB protein; coiled co 96.9 0.0041 1.4E-07 71.4 11.7 50 17-66 558-613 (854)
246 1ypw_A Transitional endoplasmi 96.8 0.0016 5.5E-08 73.9 7.6 132 17-152 204-385 (806)
247 1rz3_A Hypothetical protein rb 96.7 0.0024 8.3E-08 59.2 7.0 46 21-66 2-47 (201)
248 1pgv_A TMD-1, tropomodulin TMD 96.7 0.00057 1.9E-08 62.4 2.4 42 486-527 121-168 (197)
249 1u0j_A DNA replication protein 96.6 0.0099 3.4E-07 56.8 10.0 110 41-151 104-250 (267)
250 2orw_A Thymidine kinase; TMTK, 96.2 0.007 2.4E-07 55.0 6.4 77 42-121 4-112 (184)
251 1qhx_A CPT, protein (chloramph 96.2 0.0024 8E-08 57.9 3.2 25 42-66 4-28 (178)
252 3hws_A ATP-dependent CLP prote 96.1 0.0043 1.5E-07 63.6 5.2 49 18-66 16-76 (363)
253 2qgz_A Helicase loader, putati 96.1 0.0064 2.2E-07 60.4 6.2 60 17-76 124-188 (308)
254 3fwy_A Light-independent proto 96.1 0.0053 1.8E-07 61.0 5.4 29 40-68 47-75 (314)
255 3c8u_A Fructokinase; YP_612366 96.0 0.0059 2E-07 56.9 5.0 41 25-66 7-47 (208)
256 3nbx_X ATPase RAVA; AAA+ ATPas 96.0 0.0035 1.2E-07 66.4 3.7 45 16-65 21-65 (500)
257 1jr3_D DNA polymerase III, del 95.9 0.056 1.9E-06 54.6 12.4 142 40-183 17-184 (343)
258 3kb2_A SPBC2 prophage-derived 95.8 0.0054 1.8E-07 55.1 3.8 25 42-66 2-26 (173)
259 3cf2_A TER ATPase, transitiona 95.8 0.0065 2.2E-07 67.9 4.9 132 16-152 476-661 (806)
260 1um8_A ATP-dependent CLP prote 95.8 0.0067 2.3E-07 62.5 4.7 50 17-66 21-97 (376)
261 2ga8_A Hypothetical 39.9 kDa p 95.7 0.0097 3.3E-07 59.4 5.4 50 20-69 2-52 (359)
262 3trf_A Shikimate kinase, SK; a 95.7 0.0057 1.9E-07 55.7 3.5 25 41-65 5-29 (185)
263 3vaa_A Shikimate kinase, SK; s 95.7 0.0062 2.1E-07 56.3 3.7 25 41-65 25-49 (199)
264 1g8p_A Magnesium-chelatase 38 95.7 0.0057 1.9E-07 62.3 3.7 50 14-66 21-70 (350)
265 3tlx_A Adenylate kinase 2; str 95.6 0.011 3.6E-07 56.7 5.3 44 21-65 10-53 (243)
266 1ly1_A Polynucleotide kinase; 95.6 0.0069 2.4E-07 54.8 3.7 22 42-63 3-24 (181)
267 3jvv_A Twitching mobility prot 95.6 0.023 7.7E-07 57.5 7.6 81 42-125 124-234 (356)
268 3ice_A Transcription terminati 95.6 0.0097 3.3E-07 59.7 4.7 29 41-69 174-202 (422)
269 1odf_A YGR205W, hypothetical 3 95.6 0.015 5E-07 57.1 6.0 30 38-67 28-57 (290)
270 1nks_A Adenylate kinase; therm 95.6 0.012 3.9E-07 54.0 5.1 26 42-67 2-27 (194)
271 2rhm_A Putative kinase; P-loop 95.6 0.0089 3.1E-07 54.8 4.2 26 40-65 4-29 (193)
272 1ex7_A Guanylate kinase; subst 95.5 0.0046 1.6E-07 56.0 2.1 29 42-70 2-30 (186)
273 1zuh_A Shikimate kinase; alpha 95.5 0.0078 2.7E-07 53.8 3.6 27 40-66 6-32 (168)
274 3uie_A Adenylyl-sulfate kinase 95.5 0.015 5.3E-07 53.6 5.5 27 40-66 24-50 (200)
275 3iij_A Coilin-interacting nucl 95.4 0.0069 2.4E-07 54.9 3.0 25 41-65 11-35 (180)
276 2yvu_A Probable adenylyl-sulfa 95.4 0.017 5.7E-07 52.6 5.4 28 40-67 12-39 (186)
277 3lw7_A Adenylate kinase relate 95.4 0.0082 2.8E-07 54.0 3.3 20 42-61 2-21 (179)
278 1uj2_A Uridine-cytidine kinase 95.4 0.0097 3.3E-07 57.3 3.9 27 40-66 21-47 (252)
279 2ze6_A Isopentenyl transferase 95.2 0.012 4E-07 56.7 4.0 24 42-65 2-25 (253)
280 1via_A Shikimate kinase; struc 95.2 0.011 3.8E-07 53.2 3.6 24 43-66 6-29 (175)
281 1kht_A Adenylate kinase; phosp 95.2 0.012 4E-07 53.9 3.8 26 42-67 4-29 (192)
282 1tev_A UMP-CMP kinase; ploop, 95.2 0.013 4.3E-07 53.8 4.0 25 41-65 3-27 (196)
283 1gvn_B Zeta; postsegregational 95.2 0.018 6.3E-07 56.4 5.4 26 40-65 32-57 (287)
284 2plr_A DTMP kinase, probable t 95.2 0.021 7E-07 53.2 5.5 28 41-68 4-31 (213)
285 1kag_A SKI, shikimate kinase I 95.2 0.0091 3.1E-07 53.6 2.9 24 42-65 5-28 (173)
286 3cm0_A Adenylate kinase; ATP-b 95.2 0.015 5.1E-07 52.9 4.4 25 41-65 4-28 (186)
287 2jaq_A Deoxyguanosine kinase; 95.1 0.012 4.3E-07 54.3 3.7 24 43-66 2-25 (205)
288 4eun_A Thermoresistant glucoki 95.1 0.018 6E-07 53.2 4.7 25 41-65 29-53 (200)
289 3t61_A Gluconokinase; PSI-biol 95.1 0.011 3.7E-07 54.8 3.2 25 41-65 18-42 (202)
290 1zp6_A Hypothetical protein AT 95.1 0.012 4.1E-07 53.8 3.4 24 41-64 9-32 (191)
291 1nn5_A Similar to deoxythymidy 95.0 0.019 6.6E-07 53.5 4.8 28 41-68 9-36 (215)
292 1g41_A Heat shock protein HSLU 95.0 0.017 5.8E-07 59.9 4.7 51 17-67 15-76 (444)
293 2c95_A Adenylate kinase 1; tra 95.0 0.012 4.2E-07 54.0 3.3 25 41-65 9-33 (196)
294 1ukz_A Uridylate kinase; trans 95.0 0.016 5.4E-07 53.6 4.1 26 40-65 14-39 (203)
295 3tqc_A Pantothenate kinase; bi 95.0 0.025 8.4E-07 56.1 5.6 46 21-66 71-117 (321)
296 2vli_A Antibiotic resistance p 95.0 0.008 2.7E-07 54.6 2.0 25 41-65 5-29 (183)
297 1y63_A LMAJ004144AAA protein; 95.0 0.013 4.6E-07 53.2 3.5 24 41-64 10-33 (184)
298 2cdn_A Adenylate kinase; phosp 95.0 0.016 5.6E-07 53.5 4.1 26 40-65 19-44 (201)
299 1knq_A Gluconate kinase; ALFA/ 95.0 0.017 5.7E-07 52.0 4.0 26 40-65 7-32 (175)
300 1e6c_A Shikimate kinase; phosp 95.0 0.012 4E-07 52.9 2.9 24 42-65 3-26 (173)
301 3a4m_A L-seryl-tRNA(SEC) kinas 95.0 0.016 5.4E-07 56.1 4.0 26 41-66 4-29 (260)
302 1xjc_A MOBB protein homolog; s 94.9 0.023 7.9E-07 50.4 4.7 29 40-68 3-31 (169)
303 2pt5_A Shikimate kinase, SK; a 94.9 0.017 5.8E-07 51.5 3.9 23 43-65 2-24 (168)
304 2iyv_A Shikimate kinase, SK; t 94.9 0.016 5.5E-07 52.6 3.7 23 43-65 4-26 (184)
305 1kgd_A CASK, peripheral plasma 94.9 0.014 4.6E-07 53.0 3.1 26 41-66 5-30 (180)
306 1qf9_A UMP/CMP kinase, protein 94.8 0.021 7.3E-07 52.2 4.5 26 40-65 5-30 (194)
307 2qor_A Guanylate kinase; phosp 94.8 0.012 4.2E-07 54.5 2.8 27 40-66 11-37 (204)
308 3bh0_A DNAB-like replicative h 94.8 0.036 1.2E-06 55.2 6.3 36 41-76 68-103 (315)
309 3umf_A Adenylate kinase; rossm 94.8 0.02 7E-07 53.2 4.1 26 40-65 28-53 (217)
310 3rfe_A Platelet glycoprotein I 94.8 0.055 1.9E-06 45.8 6.5 33 423-455 32-65 (130)
311 2bwj_A Adenylate kinase 5; pho 94.8 0.017 6E-07 53.1 3.6 25 41-65 12-36 (199)
312 3dm5_A SRP54, signal recogniti 94.7 0.074 2.5E-06 55.0 8.5 29 40-68 99-127 (443)
313 2r2a_A Uncharacterized protein 94.7 0.051 1.8E-06 49.8 6.6 23 42-64 6-28 (199)
314 3a00_A Guanylate kinase, GMP k 94.7 0.014 4.9E-07 53.1 2.9 31 42-72 2-32 (186)
315 2wwf_A Thymidilate kinase, put 94.7 0.016 5.6E-07 53.9 3.4 27 41-67 10-36 (212)
316 3l0o_A Transcription terminati 94.7 0.025 8.6E-07 56.6 4.7 39 28-68 164-202 (427)
317 1uf9_A TT1252 protein; P-loop, 94.7 0.019 6.7E-07 52.9 3.8 25 40-64 7-31 (203)
318 2p5t_B PEZT; postsegregational 94.7 0.028 9.7E-07 54.0 5.0 27 39-65 30-56 (253)
319 1vma_A Cell division protein F 94.7 0.049 1.7E-06 53.7 6.7 44 24-67 82-130 (306)
320 1aky_A Adenylate kinase; ATP:A 94.6 0.018 6.2E-07 54.0 3.5 25 41-65 4-28 (220)
321 1zu4_A FTSY; GTPase, signal re 94.6 0.056 1.9E-06 53.7 7.2 28 40-67 104-131 (320)
322 3tau_A Guanylate kinase, GMP k 94.6 0.018 6.2E-07 53.5 3.4 27 40-66 7-33 (208)
323 2pbr_A DTMP kinase, thymidylat 94.6 0.021 7.1E-07 52.3 3.8 24 43-66 2-25 (195)
324 3ney_A 55 kDa erythrocyte memb 94.6 0.017 5.9E-07 52.7 3.1 27 40-66 18-44 (197)
325 3p32_A Probable GTPase RV1496/ 94.6 0.06 2E-06 54.7 7.5 28 40-67 78-105 (355)
326 2bdt_A BH3686; alpha-beta prot 94.6 0.021 7.3E-07 52.0 3.7 22 42-63 3-24 (189)
327 3k1j_A LON protease, ATP-depen 94.6 0.022 7.6E-07 62.5 4.4 49 15-68 39-87 (604)
328 1ny5_A Transcriptional regulat 94.5 0.53 1.8E-05 48.2 14.6 47 17-64 137-183 (387)
329 1cke_A CK, MSSA, protein (cyti 94.5 0.023 7.9E-07 53.6 3.8 24 42-65 6-29 (227)
330 1zak_A Adenylate kinase; ATP:A 94.5 0.017 5.8E-07 54.3 2.8 26 41-66 5-30 (222)
331 2j37_W Signal recognition part 94.4 0.088 3E-06 55.7 8.4 57 27-97 81-143 (504)
332 2grj_A Dephospho-COA kinase; T 94.4 0.031 1.1E-06 51.0 4.4 25 40-64 11-35 (192)
333 3fb4_A Adenylate kinase; psych 94.4 0.025 8.5E-07 52.9 3.8 23 43-65 2-24 (216)
334 2z0h_A DTMP kinase, thymidylat 94.4 0.026 9E-07 51.8 3.8 25 43-67 2-26 (197)
335 2qt1_A Nicotinamide riboside k 94.3 0.025 8.6E-07 52.4 3.7 25 40-64 20-44 (207)
336 2j41_A Guanylate kinase; GMP, 94.3 0.023 7.9E-07 52.6 3.4 25 41-65 6-30 (207)
337 1zd8_A GTP:AMP phosphotransfer 94.3 0.018 6.3E-07 54.3 2.8 25 41-65 7-31 (227)
338 2wsm_A Hydrogenase expression/ 94.3 0.043 1.5E-06 51.4 5.3 45 21-68 13-57 (221)
339 2if2_A Dephospho-COA kinase; a 94.3 0.023 7.7E-07 52.6 3.3 21 43-63 3-23 (204)
340 3asz_A Uridine kinase; cytidin 94.3 0.031 1.1E-06 52.0 4.2 27 40-66 5-31 (211)
341 2bbw_A Adenylate kinase 4, AK4 94.2 0.026 8.9E-07 54.0 3.6 25 41-65 27-51 (246)
342 2hf9_A Probable hydrogenase ni 94.2 0.065 2.2E-06 50.3 6.4 41 25-68 25-65 (226)
343 3end_A Light-independent proto 94.2 0.045 1.5E-06 54.4 5.4 30 39-68 39-68 (307)
344 3io5_A Recombination and repai 94.2 0.06 2.1E-06 52.6 6.0 37 43-79 30-68 (333)
345 1m7g_A Adenylylsulfate kinase; 94.2 0.034 1.2E-06 51.7 4.2 27 40-66 24-50 (211)
346 1ye8_A Protein THEP1, hypothet 94.2 0.031 1.1E-06 50.4 3.8 24 43-66 2-25 (178)
347 1g5t_A COB(I)alamin adenosyltr 94.2 0.098 3.4E-06 47.3 7.0 25 41-65 28-52 (196)
348 2pez_A Bifunctional 3'-phospho 94.2 0.035 1.2E-06 50.1 4.2 27 40-66 4-30 (179)
349 3hr8_A Protein RECA; alpha and 94.2 0.044 1.5E-06 55.1 5.2 52 26-78 46-98 (356)
350 1sky_E F1-ATPase, F1-ATP synth 94.1 0.045 1.5E-06 56.8 5.3 28 42-69 152-179 (473)
351 3tr0_A Guanylate kinase, GMP k 94.1 0.028 9.4E-07 52.0 3.4 25 41-65 7-31 (205)
352 1jjv_A Dephospho-COA kinase; P 94.1 0.029 9.8E-07 52.0 3.5 22 42-63 3-24 (206)
353 3dl0_A Adenylate kinase; phosp 94.1 0.03 1E-06 52.3 3.7 23 43-65 2-24 (216)
354 2xxa_A Signal recognition part 94.1 0.08 2.7E-06 55.0 7.1 44 25-68 78-127 (433)
355 1ak2_A Adenylate kinase isoenz 94.0 0.032 1.1E-06 52.8 3.8 25 41-65 16-40 (233)
356 2dr3_A UPF0273 protein PH0284; 94.0 0.047 1.6E-06 52.1 5.0 36 41-76 23-58 (247)
357 1gtv_A TMK, thymidylate kinase 94.0 0.025 8.5E-07 52.8 2.8 25 43-67 2-26 (214)
358 2v54_A DTMP kinase, thymidylat 94.0 0.029 9.9E-07 51.8 3.3 25 41-65 4-28 (204)
359 3e70_C DPA, signal recognition 94.0 0.077 2.6E-06 52.9 6.5 28 40-67 128-155 (328)
360 2w0m_A SSO2452; RECA, SSPF, un 93.9 0.049 1.7E-06 51.4 4.8 27 41-67 23-49 (235)
361 2cvh_A DNA repair and recombin 93.8 0.059 2E-06 50.3 5.2 23 41-63 20-42 (220)
362 2r8r_A Sensor protein; KDPD, P 93.8 0.074 2.5E-06 49.3 5.6 28 41-68 6-33 (228)
363 2f6r_A COA synthase, bifunctio 93.8 0.034 1.2E-06 54.4 3.6 24 40-63 74-97 (281)
364 3nwj_A ATSK2; P loop, shikimat 93.8 0.032 1.1E-06 53.3 3.2 25 42-66 49-73 (250)
365 2vhj_A Ntpase P4, P4; non- hyd 93.8 0.04 1.4E-06 54.1 3.9 24 41-64 123-146 (331)
366 1vht_A Dephospho-COA kinase; s 93.8 0.041 1.4E-06 51.5 4.0 23 41-63 4-26 (218)
367 3b9q_A Chloroplast SRP recepto 93.8 0.087 3E-06 51.9 6.5 28 40-67 99-126 (302)
368 2v3c_C SRP54, signal recogniti 93.8 0.042 1.4E-06 57.1 4.3 29 40-68 98-126 (432)
369 2xb4_A Adenylate kinase; ATP-b 93.8 0.039 1.3E-06 51.9 3.8 23 43-65 2-24 (223)
370 3be4_A Adenylate kinase; malar 93.8 0.036 1.2E-06 51.8 3.5 24 42-65 6-29 (217)
371 2ewv_A Twitching motility prot 93.7 0.12 4E-06 52.8 7.5 28 40-67 135-162 (372)
372 3d3q_A TRNA delta(2)-isopenten 93.7 0.038 1.3E-06 55.0 3.7 24 42-65 8-31 (340)
373 1sq5_A Pantothenate kinase; P- 93.7 0.066 2.3E-06 53.1 5.6 27 40-66 79-105 (308)
374 3r20_A Cytidylate kinase; stru 93.7 0.042 1.4E-06 51.7 3.8 25 41-65 9-33 (233)
375 3ake_A Cytidylate kinase; CMP 93.7 0.043 1.5E-06 50.8 3.9 24 43-66 4-27 (208)
376 1e4v_A Adenylate kinase; trans 93.7 0.039 1.3E-06 51.5 3.6 23 43-65 2-24 (214)
377 4e22_A Cytidylate kinase; P-lo 93.7 0.036 1.2E-06 53.2 3.5 25 41-65 27-51 (252)
378 2jeo_A Uridine-cytidine kinase 93.7 0.047 1.6E-06 52.2 4.3 26 40-65 24-49 (245)
379 3crm_A TRNA delta(2)-isopenten 93.7 0.036 1.2E-06 54.8 3.4 25 41-65 5-29 (323)
380 1lvg_A Guanylate kinase, GMP k 93.6 0.032 1.1E-06 51.3 2.9 26 41-66 4-29 (198)
381 1n0w_A DNA repair protein RAD5 93.6 0.061 2.1E-06 51.2 4.9 25 41-65 24-48 (243)
382 1rj9_A FTSY, signal recognitio 93.6 0.06 2E-06 53.1 4.9 29 40-68 101-129 (304)
383 3dzd_A Transcriptional regulat 93.6 0.71 2.4E-05 46.8 13.1 49 16-65 128-176 (368)
384 3kl4_A SRP54, signal recogniti 93.6 0.092 3.1E-06 54.3 6.4 29 40-68 96-124 (433)
385 1u94_A RECA protein, recombina 93.6 0.064 2.2E-06 54.2 5.2 52 26-78 48-100 (356)
386 4gp7_A Metallophosphoesterase; 93.6 0.036 1.2E-06 49.6 3.0 21 41-61 9-29 (171)
387 3aez_A Pantothenate kinase; tr 93.6 0.051 1.7E-06 53.9 4.4 28 40-67 89-116 (312)
388 3sr0_A Adenylate kinase; phosp 93.5 0.047 1.6E-06 50.4 3.8 23 43-65 2-24 (206)
389 1yrb_A ATP(GTP)binding protein 93.5 0.081 2.8E-06 51.0 5.7 27 40-66 13-39 (262)
390 2zr9_A Protein RECA, recombina 93.5 0.065 2.2E-06 54.1 5.0 53 25-78 45-98 (349)
391 3a8t_A Adenylate isopentenyltr 93.5 0.031 1.1E-06 55.4 2.5 25 41-65 40-64 (339)
392 1np6_A Molybdopterin-guanine d 93.4 0.077 2.6E-06 47.4 4.8 28 40-67 5-32 (174)
393 4a74_A DNA repair and recombin 93.4 0.087 3E-06 49.5 5.6 26 40-65 24-49 (231)
394 1j8m_F SRP54, signal recogniti 93.3 0.11 3.6E-06 51.1 6.1 27 41-67 98-124 (297)
395 2ehv_A Hypothetical protein PH 93.3 0.071 2.4E-06 50.9 4.8 23 41-63 30-52 (251)
396 1g8f_A Sulfate adenylyltransfe 93.3 0.052 1.8E-06 57.4 4.0 49 18-67 373-421 (511)
397 2ged_A SR-beta, signal recogni 93.2 0.053 1.8E-06 49.4 3.7 24 40-63 47-70 (193)
398 2qmh_A HPR kinase/phosphorylas 93.2 0.039 1.3E-06 49.9 2.6 24 41-64 34-57 (205)
399 2eyu_A Twitching motility prot 93.2 0.085 2.9E-06 50.8 5.2 35 40-74 24-58 (261)
400 2og2_A Putative signal recogni 93.2 0.12 4.1E-06 52.1 6.5 28 40-67 156-183 (359)
401 1ltq_A Polynucleotide kinase; 93.2 0.051 1.8E-06 53.7 3.7 23 42-64 3-25 (301)
402 3foz_A TRNA delta(2)-isopenten 93.1 0.058 2E-06 52.7 3.8 26 40-65 9-34 (316)
403 1cp2_A CP2, nitrogenase iron p 93.1 0.089 3E-06 51.0 5.3 27 42-68 2-28 (269)
404 2px0_A Flagellar biosynthesis 93.1 0.067 2.3E-06 52.6 4.4 27 40-66 104-130 (296)
405 3exa_A TRNA delta(2)-isopenten 93.1 0.058 2E-06 52.7 3.8 25 41-65 3-27 (322)
406 2b8t_A Thymidine kinase; deoxy 93.0 0.1 3.5E-06 48.7 5.3 29 40-68 11-39 (223)
407 4eaq_A DTMP kinase, thymidylat 93.0 0.073 2.5E-06 50.1 4.4 28 40-67 25-52 (229)
408 1cr0_A DNA primase/helicase; R 93.0 0.084 2.9E-06 52.0 5.0 27 41-67 35-61 (296)
409 1htw_A HI0065; nucleotide-bind 93.0 0.07 2.4E-06 46.8 3.9 26 40-65 32-57 (158)
410 1v5w_A DMC1, meiotic recombina 93.0 0.14 4.8E-06 51.5 6.7 26 40-65 121-146 (343)
411 4a1f_A DNAB helicase, replicat 93.0 0.061 2.1E-06 53.7 3.8 57 18-76 25-81 (338)
412 2q6t_A DNAB replication FORK h 92.9 0.11 3.6E-06 54.6 5.9 40 26-67 187-226 (444)
413 2afh_E Nitrogenase iron protei 92.9 0.097 3.3E-06 51.4 5.2 28 41-68 2-29 (289)
414 1znw_A Guanylate kinase, GMP k 92.9 0.057 2E-06 50.0 3.3 26 41-66 20-45 (207)
415 1z6g_A Guanylate kinase; struc 92.9 0.047 1.6E-06 51.1 2.7 25 41-65 23-47 (218)
416 1s96_A Guanylate kinase, GMP k 92.9 0.056 1.9E-06 50.5 3.2 26 41-66 16-41 (219)
417 1nlf_A Regulatory protein REPA 92.8 0.1 3.4E-06 50.9 5.2 26 41-66 30-55 (279)
418 3e1s_A Exodeoxyribonuclease V, 92.8 0.18 6.2E-06 54.5 7.6 78 41-121 204-315 (574)
419 2f1r_A Molybdopterin-guanine d 92.8 0.045 1.6E-06 48.8 2.4 26 42-67 3-28 (171)
420 2i3b_A HCR-ntpase, human cance 92.7 0.063 2.1E-06 48.8 3.3 24 43-66 3-26 (189)
421 4hlc_A DTMP kinase, thymidylat 92.7 0.11 3.9E-06 47.8 5.1 29 42-70 3-31 (205)
422 3bgw_A DNAB-like replicative h 92.7 0.11 3.7E-06 54.3 5.6 36 41-76 197-232 (444)
423 1ls1_A Signal recognition part 92.7 0.11 3.8E-06 51.0 5.3 28 40-67 97-124 (295)
424 1a7j_A Phosphoribulokinase; tr 92.7 0.035 1.2E-06 54.5 1.6 27 40-66 4-30 (290)
425 1svm_A Large T antigen; AAA+ f 92.7 0.1 3.5E-06 53.0 5.2 26 40-65 168-193 (377)
426 2z43_A DNA repair and recombin 92.6 0.094 3.2E-06 52.4 4.8 26 41-66 107-132 (324)
427 2axn_A 6-phosphofructo-2-kinas 92.6 0.11 3.8E-06 55.5 5.6 30 40-69 34-63 (520)
428 1xp8_A RECA protein, recombina 92.6 0.1 3.5E-06 52.9 5.0 53 25-78 58-111 (366)
429 2ocp_A DGK, deoxyguanosine kin 92.6 0.075 2.6E-06 50.6 3.8 26 41-66 2-27 (241)
430 2r6a_A DNAB helicase, replicat 92.5 0.079 2.7E-06 55.8 4.1 27 41-67 203-229 (454)
431 1q3t_A Cytidylate kinase; nucl 92.4 0.08 2.7E-06 50.2 3.7 26 40-65 15-40 (236)
432 3fkq_A NTRC-like two-domain pr 92.4 0.2 6.9E-06 51.1 7.0 30 39-68 141-171 (373)
433 4edh_A DTMP kinase, thymidylat 92.4 0.16 5.5E-06 47.1 5.7 28 41-68 6-33 (213)
434 1ypw_A Transitional endoplasmi 92.4 0.063 2.1E-06 60.9 3.4 53 16-68 476-538 (806)
435 3zvl_A Bifunctional polynucleo 92.3 0.048 1.7E-06 56.6 2.1 26 40-65 257-282 (416)
436 3eph_A TRNA isopentenyltransfe 92.1 0.091 3.1E-06 53.4 3.8 25 42-66 3-27 (409)
437 2yhs_A FTSY, cell division pro 92.1 0.13 4.6E-06 53.7 5.1 28 40-67 292-319 (503)
438 2zts_A Putative uncharacterize 92.0 0.12 4E-06 49.3 4.4 24 41-64 30-53 (251)
439 3lnc_A Guanylate kinase, GMP k 92.0 0.058 2E-06 51.0 2.1 25 41-65 27-52 (231)
440 3ld9_A DTMP kinase, thymidylat 91.8 0.13 4.3E-06 48.0 4.2 28 40-67 20-47 (223)
441 1q57_A DNA primase/helicase; d 91.8 0.27 9.1E-06 52.6 7.4 28 41-68 242-269 (503)
442 3fdi_A Uncharacterized protein 91.8 0.099 3.4E-06 48.1 3.4 25 42-66 7-31 (201)
443 3f9v_A Minichromosome maintena 91.7 0.049 1.7E-06 59.3 1.4 50 16-65 294-351 (595)
444 2p67_A LAO/AO transport system 91.6 0.29 1E-05 49.1 7.0 29 40-68 55-83 (341)
445 4dzz_A Plasmid partitioning pr 91.6 0.16 5.5E-06 46.7 4.7 27 42-68 2-29 (206)
446 1pzn_A RAD51, DNA repair and r 91.6 0.2 7E-06 50.4 5.8 26 40-65 130-155 (349)
447 3kjh_A CO dehydrogenase/acetyl 91.5 0.16 5.6E-06 48.4 4.9 25 44-68 3-27 (254)
448 3cr8_A Sulfate adenylyltranfer 91.5 0.16 5.4E-06 54.5 5.0 28 40-67 368-395 (552)
449 3io3_A DEHA2D07832P; chaperone 91.4 0.19 6.4E-06 50.6 5.2 27 40-66 17-43 (348)
450 3bfv_A CAPA1, CAPB2, membrane 91.4 0.32 1.1E-05 47.0 6.8 45 24-68 64-110 (271)
451 2wji_A Ferrous iron transport 91.4 0.14 4.7E-06 45.2 3.9 23 41-63 3-25 (165)
452 3tqf_A HPR(Ser) kinase; transf 91.4 0.13 4.6E-06 45.2 3.5 23 41-63 16-38 (181)
453 3b85_A Phosphate starvation-in 91.3 0.084 2.9E-06 48.8 2.5 23 42-64 23-45 (208)
454 2onk_A Molybdate/tungstate ABC 91.3 0.11 3.8E-06 49.2 3.3 24 42-65 25-48 (240)
455 2dyk_A GTP-binding protein; GT 91.3 0.14 4.6E-06 44.8 3.7 22 42-63 2-23 (161)
456 3iqw_A Tail-anchored protein t 91.3 0.19 6.7E-06 50.1 5.2 29 40-68 15-43 (334)
457 1bif_A 6-phosphofructo-2-kinas 91.3 0.19 6.5E-06 53.1 5.4 30 40-69 38-67 (469)
458 3upu_A ATP-dependent DNA helic 91.2 0.18 6E-06 53.2 5.1 26 43-68 47-72 (459)
459 2i1q_A DNA repair and recombin 91.2 0.21 7E-06 49.9 5.4 26 40-65 97-122 (322)
460 2gks_A Bifunctional SAT/APS ki 91.2 0.21 7.3E-06 53.6 5.7 49 18-67 350-398 (546)
461 3gmt_A Adenylate kinase; ssgci 91.2 0.13 4.4E-06 48.0 3.5 24 42-65 9-32 (230)
462 1oix_A RAS-related protein RAB 91.2 0.12 4.2E-06 46.9 3.4 25 40-64 28-52 (191)
463 1m8p_A Sulfate adenylyltransfe 91.2 0.2 6.9E-06 54.0 5.6 28 40-67 395-422 (573)
464 3ug7_A Arsenical pump-driving 91.1 0.3 1E-05 49.3 6.5 29 40-68 25-53 (349)
465 3tif_A Uncharacterized ABC tra 91.1 0.1 3.4E-06 49.4 2.8 24 41-64 31-54 (235)
466 2ffh_A Protein (FFH); SRP54, s 91.1 0.22 7.5E-06 51.4 5.5 29 40-68 97-125 (425)
467 3hjn_A DTMP kinase, thymidylat 91.1 0.22 7.7E-06 45.5 5.1 31 43-73 2-32 (197)
468 2pcj_A ABC transporter, lipopr 91.0 0.097 3.3E-06 49.1 2.6 23 42-64 31-53 (224)
469 3lv8_A DTMP kinase, thymidylat 91.0 0.2 6.7E-06 47.3 4.7 28 41-68 27-54 (236)
470 2oze_A ORF delta'; para, walke 91.0 0.18 6E-06 49.7 4.6 39 25-67 22-63 (298)
471 4gzl_A RAS-related C3 botulinu 90.9 0.15 5E-06 47.0 3.7 44 17-63 9-52 (204)
472 1x6v_B Bifunctional 3'-phospho 90.9 0.17 5.6E-06 54.9 4.5 27 40-66 51-77 (630)
473 2qm8_A GTPase/ATPase; G protei 90.9 0.39 1.3E-05 48.1 7.0 28 40-67 54-81 (337)
474 3v9p_A DTMP kinase, thymidylat 90.9 0.1 3.6E-06 48.8 2.6 29 40-68 24-52 (227)
475 2cbz_A Multidrug resistance-as 90.9 0.11 3.8E-06 49.2 2.8 25 41-65 31-55 (237)
476 2v9p_A Replication protein E1; 90.8 0.14 4.7E-06 50.3 3.5 25 41-65 126-150 (305)
477 2wjg_A FEOB, ferrous iron tran 90.8 0.2 6.8E-06 45.2 4.4 24 40-63 6-29 (188)
478 2zej_A Dardarin, leucine-rich 90.8 0.11 3.6E-06 47.0 2.5 21 43-63 4-24 (184)
479 3cio_A ETK, tyrosine-protein k 90.7 0.35 1.2E-05 47.5 6.5 29 40-68 103-132 (299)
480 2h92_A Cytidylate kinase; ross 90.7 0.12 4.1E-06 48.2 2.9 24 42-65 4-27 (219)
481 1p5z_B DCK, deoxycytidine kina 90.7 0.075 2.6E-06 51.3 1.5 26 40-65 23-48 (263)
482 2f9l_A RAB11B, member RAS onco 90.7 0.16 5.4E-06 46.5 3.6 24 41-64 5-28 (199)
483 2d2e_A SUFC protein; ABC-ATPas 90.6 0.14 4.8E-06 48.9 3.3 23 42-64 30-52 (250)
484 3gfo_A Cobalt import ATP-bindi 90.5 0.12 4.1E-06 50.1 2.8 24 42-65 35-58 (275)
485 3zq6_A Putative arsenical pump 90.5 0.26 8.9E-06 49.1 5.4 28 41-68 14-41 (324)
486 3hdt_A Putative kinase; struct 90.5 0.2 6.7E-06 46.8 4.2 26 41-66 14-39 (223)
487 1b0u_A Histidine permease; ABC 90.4 0.12 4.2E-06 49.7 2.8 25 41-65 32-56 (262)
488 2zu0_C Probable ATP-dependent 90.4 0.15 5E-06 49.3 3.3 24 41-64 46-69 (267)
489 1mv5_A LMRA, multidrug resista 90.4 0.14 4.7E-06 48.8 3.0 25 41-65 28-52 (243)
490 1ji0_A ABC transporter; ATP bi 90.4 0.13 4.4E-06 48.8 2.8 24 41-64 32-55 (240)
491 2www_A Methylmalonic aciduria 90.4 0.29 9.9E-06 49.3 5.6 29 40-68 73-101 (349)
492 1sgw_A Putative ABC transporte 90.4 0.11 3.7E-06 48.3 2.2 23 42-64 36-58 (214)
493 1fx0_B ATP synthase beta chain 90.2 0.42 1.4E-05 49.7 6.6 26 41-66 165-190 (498)
494 4g1u_C Hemin import ATP-bindin 90.2 0.13 4.5E-06 49.6 2.8 25 41-65 37-61 (266)
495 2olj_A Amino acid ABC transpor 90.2 0.13 4.6E-06 49.4 2.8 25 41-65 50-74 (263)
496 2pze_A Cystic fibrosis transme 90.2 0.14 4.6E-06 48.3 2.8 25 41-65 34-58 (229)
497 1g6h_A High-affinity branched- 90.2 0.13 4.6E-06 49.3 2.8 25 41-65 33-57 (257)
498 2ff7_A Alpha-hemolysin translo 90.2 0.14 4.7E-06 48.9 2.8 24 42-65 36-59 (247)
499 2ck3_D ATP synthase subunit be 90.2 0.29 1E-05 50.6 5.4 26 41-66 153-178 (482)
500 2ce2_X GTPase HRAS; signaling 90.2 0.16 5.4E-06 44.5 3.1 21 43-63 5-25 (166)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=7.1e-39 Score=351.64 Aligned_cols=265 Identities=15% Similarity=0.168 Sum_probs=208.9
Q ss_pred cccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHH----HHhcccceeEEEEccc----------------
Q 037483 20 VRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYD----LISHEFEGSSFLVDEV---------------- 79 (693)
Q Consensus 20 vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~----~~~~~f~~~~~~~~~~---------------- 79 (693)
|||++++++|.++|.....++.++|+|+|||||||||||+++|+ +++.+|+.++|+....
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 59999999999999765444689999999999999999999996 6889999999997521
Q ss_pred -C--------------------------CCCC-eEEEEEecCCChhhhhHHhcCCCcCCCCceEEEEeCChHHHHHcC-C
Q 037483 80 -G--------------------------CNTK-KVLLVIDDVVDIKQLEYLVGKREWFGSGSRIIITSRDEHLLKTHG-V 130 (693)
Q Consensus 80 -~--------------------------~~~~-~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~iliTtR~~~~~~~~~-~ 130 (693)
+ +.++ |+||||||||+.+++ .+.. .+||+||||||++.++..++ .
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~~ 284 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAASQT 284 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCCSC
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcCCC
Confidence 0 2354 999999999998876 3322 27999999999999988765 4
Q ss_pred CceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHHhhhhcCCChHHHHHHHHH-hccCCCch
Q 037483 131 DELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVLGSFLNGRSTDQWRSTLER-LKRDPPNK 209 (693)
Q Consensus 131 ~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~w~~~l~~-l~~~~~~~ 209 (693)
...|++++|+.+||++||.+.+|.... .....+.+++|+++|+|+||||+++|+.++.+.. +|...+.. +.......
T Consensus 285 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~~~~~ 362 (549)
T 2a5y_B 285 CEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESRGLVG 362 (549)
T ss_dssp EEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHHCSST
T ss_pred CeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhhcccHHH
Confidence 467999999999999999999976543 3567788999999999999999999999987743 33333322 22213455
Q ss_pred HHHHHHHhhccCcHhhHhHHh-----------hhhcccCCCCHHHHHHHHHHc--CCCcc-----------chhhhhhcC
Q 037483 210 IMSILQISFDGLQDSEKKIFL-----------DVACFFKWKSREYVTKILEAC--GFSPV-----------IGIEVLIEK 265 (693)
Q Consensus 210 ~~~~l~~s~~~L~~~~~~~~~-----------~la~f~~~~~~~~l~~~~~~~--~~~~~-----------~~l~~L~~~ 265 (693)
+..++.+||+.||++.|.||. +||+||+++... .++|.++ |+... ..+++|+++
T Consensus 363 i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~r 440 (549)
T 2a5y_B 363 VECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKR 440 (549)
T ss_dssp TCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTTTB
T ss_pred HHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHHHHc
Confidence 667777888888888888877 999999988655 6778887 65532 258999999
Q ss_pred CcEEEeC---CCcEehhHHHHHHHHHHhhccC
Q 037483 266 SLLIVDE---DNRLQMHDLLQELGHQIVQRQS 294 (693)
Q Consensus 266 sLi~~~~---~~~~~~H~lv~~~~~~~~~~~~ 294 (693)
||++... ..+|+|||++|+||++++.+++
T Consensus 441 sLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 441 GALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp SSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred CCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 9998764 2479999999999999887664
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.6e-34 Score=351.66 Aligned_cols=272 Identities=18% Similarity=0.249 Sum_probs=222.7
Q ss_pred CCCccCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHH---HhcccceeE-EEEccc------
Q 037483 10 PVKSETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDL---ISHEFEGSS-FLVDEV------ 79 (693)
Q Consensus 10 ~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~---~~~~f~~~~-~~~~~~------ 79 (693)
..+|.....||||++++++|.++|....+ +.++|+|+||||+||||||+++|++ ...+|...+ |+....
T Consensus 117 ~~~p~~~~~~vgR~~~~~~l~~~l~~~~~-~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 195 (1249)
T 3sfz_A 117 GGVPQRPVIFVTRKKLVHAIQQKLWKLNG-EPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGL 195 (1249)
T ss_dssp TTCCCCCSSCCCCHHHHHHHHHHHHTTTT-SCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHH
T ss_pred CCCCCCCceeccHHHHHHHHHHHHhhccC-CCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHH
Confidence 34566778899999999999999976543 6899999999999999999999975 456677666 555311
Q ss_pred ----------------------------------CCC--CCeEEEEEecCCChhhhhHHhcCCCcCCCCceEEEEeCChH
Q 037483 80 ----------------------------------GCN--TKKVLLVIDDVVDIKQLEYLVGKREWFGSGSRIIITSRDEH 123 (693)
Q Consensus 80 ----------------------------------~~~--~~~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~iliTtR~~~ 123 (693)
.+. ++|+||||||||+.++++.+ ++|++||||||++.
T Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 196 LMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTT
T ss_pred HHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHH
Confidence 022 45999999999998877654 67999999999998
Q ss_pred HHHH-cCCCceeeCCC-CCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHHhhhhcCCChHHHHHHHHH
Q 037483 124 LLKT-HGVDELCEPNG-LNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVLGSFLNGRSTDQWRSTLER 201 (693)
Q Consensus 124 ~~~~-~~~~~~~~l~~-L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~w~~~l~~ 201 (693)
++.. .+....++++. |+++||++||...++... +...+.+++|+++|+|+||||+++|++|+.++ ..|...+++
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~---~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~ 344 (1249)
T 3sfz_A 269 VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK---EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQ 344 (1249)
T ss_dssp TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS---TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHH
T ss_pred HHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh---hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHH
Confidence 8744 45567889995 999999999999884332 23345688999999999999999999998665 478888888
Q ss_pred hccCCC-----------chHHHHHHHhhccCcHhhHhHHhhhhcccCCC--CHHHHHHHHHHcCCCccchhhhhhcCCcE
Q 037483 202 LKRDPP-----------NKIMSILQISFDGLQDSEKKIFLDVACFFKWK--SREYVTKILEACGFSPVIGIEVLIEKSLL 268 (693)
Q Consensus 202 l~~~~~-----------~~~~~~l~~s~~~L~~~~~~~~~~la~f~~~~--~~~~l~~~~~~~~~~~~~~l~~L~~~sLi 268 (693)
+..... +.+..++..||+.|++++|.||+++|+||++. +.+.+..+|..++......+++|++++|+
T Consensus 345 l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~ 424 (1249)
T 3sfz_A 345 LQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLL 424 (1249)
T ss_dssp HHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSC
T ss_pred HhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccce
Confidence 765431 45889999999999999999999999999875 78888899976666667789999999999
Q ss_pred EEeCCCc---EehhHHHHHHHHHHhhcc
Q 037483 269 IVDEDNR---LQMHDLLQELGHQIVQRQ 293 (693)
Q Consensus 269 ~~~~~~~---~~~H~lv~~~~~~~~~~~ 293 (693)
+...++. |+||+++|+|+++...++
T Consensus 425 ~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 425 FCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp EEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred EEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 9876554 999999999999987655
No 3
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=5.2e-33 Score=310.14 Aligned_cols=267 Identities=18% Similarity=0.243 Sum_probs=211.0
Q ss_pred CCccCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHH---hcccc-eeEEEEccc-------
Q 037483 11 VKSETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLI---SHEFE-GSSFLVDEV------- 79 (693)
Q Consensus 11 ~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~---~~~f~-~~~~~~~~~------- 79 (693)
..|.....||||++++++|.+++....+ +.++|+|+||||+||||||.+++++. +.+|+ .++|+....
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~~~-~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~ 196 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKLKG-EPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLL 196 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTSTT-SCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHH
T ss_pred CCCCCCCeecccHHHHHHHHHHHhcccC-CCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHH
Confidence 3466778899999999999999986533 68999999999999999999999743 77896 566765311
Q ss_pred ----------C-------------------------CCCCeEEEEEecCCChhhhhHHhcCCCcCCCCceEEEEeCChHH
Q 037483 80 ----------G-------------------------CNTKKVLLVIDDVVDIKQLEYLVGKREWFGSGSRIIITSRDEHL 124 (693)
Q Consensus 80 ----------~-------------------------~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~iliTtR~~~~ 124 (693)
+ ...+++||||||||+..+++.+ +++++||||||++.+
T Consensus 197 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~ 269 (591)
T 1z6t_A 197 MKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSV 269 (591)
T ss_dssp HHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGG
T ss_pred HHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHH
Confidence 0 0126899999999997766543 679999999999887
Q ss_pred HHHcCCCceeeC---CCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHHhhhhcCCChHHHHHHHHH
Q 037483 125 LKTHGVDELCEP---NGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVLGSFLNGRSTDQWRSTLER 201 (693)
Q Consensus 125 ~~~~~~~~~~~l---~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~w~~~l~~ 201 (693)
+.... ...+++ ++|+.+|++++|...++.. .....+.+.+|+++|+|+|+||+.+|+.++... ..|...++.
T Consensus 270 ~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~ 344 (591)
T 1z6t_A 270 TDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQ 344 (591)
T ss_dssp GTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHH
T ss_pred HHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHH
Confidence 65543 234444 5899999999999988542 222245678999999999999999999998653 368888888
Q ss_pred hccCC-----------CchHHHHHHHhhccCcHhhHhHHhhhhcccCC--CCHHHHHHHHHHcCCCccchhhhhhcCCcE
Q 037483 202 LKRDP-----------PNKIMSILQISFDGLQDSEKKIFLDVACFFKW--KSREYVTKILEACGFSPVIGIEVLIEKSLL 268 (693)
Q Consensus 202 l~~~~-----------~~~~~~~l~~s~~~L~~~~~~~~~~la~f~~~--~~~~~l~~~~~~~~~~~~~~l~~L~~~sLi 268 (693)
+.... ..++..++..||+.|+++.|.||.++|+||.+ ++.+.+.++|..+.......++.|++++|+
T Consensus 345 l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll 424 (591)
T 1z6t_A 345 LQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLL 424 (591)
T ss_dssp HHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSS
T ss_pred HHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCe
Confidence 76532 24788999999999999999999999999886 466778888865433456679999999999
Q ss_pred EEeCC---CcEehhHHHHHHHHHHh
Q 037483 269 IVDED---NRLQMHDLLQELGHQIV 290 (693)
Q Consensus 269 ~~~~~---~~~~~H~lv~~~~~~~~ 290 (693)
+...+ .+|+||+++|+++++..
T Consensus 425 ~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 425 FCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp EEEEETTEEEEECCHHHHHHHHHHT
T ss_pred EEecCCCccEEEEcHHHHHHHHhhh
Confidence 86543 27999999999998873
No 4
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=4.8e-33 Score=307.92 Aligned_cols=245 Identities=19% Similarity=0.170 Sum_probs=196.9
Q ss_pred CCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHH--HHhcccce-eEEEEccc--------------
Q 037483 17 KKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYD--LISHEFEG-SSFLVDEV-------------- 79 (693)
Q Consensus 17 ~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~--~~~~~f~~-~~~~~~~~-------------- 79 (693)
+..|||++++++|.++|.... +.++|+|+||||+||||||+++|+ +++.+|+. ++|+....
T Consensus 128 k~~VGRe~eLeeL~elL~~~d--~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~l 205 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLELR--PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHCC--SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhccC--CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 445999999999999998532 478999999999999999999997 57899997 66765411
Q ss_pred ----C------------------------------CCCCeEEEEEecCCChhhhhHHhcCCCcCCCCceEEEEeCChHHH
Q 037483 80 ----G------------------------------CNTKKVLLVIDDVVDIKQLEYLVGKREWFGSGSRIIITSRDEHLL 125 (693)
Q Consensus 80 ----~------------------------------~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~iliTtR~~~~~ 125 (693)
. ..++|+||||||||+.++|+.+. +||+||||||++.++
T Consensus 206 L~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va 278 (1221)
T 1vt4_I 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVT 278 (1221)
T ss_dssp HHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHH
T ss_pred HhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHH
Confidence 0 13589999999999999888752 799999999999887
Q ss_pred HHcCCCceeeCC------CCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHHhhhhcCC--ChHHHHH
Q 037483 126 KTHGVDELCEPN------GLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVLGSFLNGR--STDQWRS 197 (693)
Q Consensus 126 ~~~~~~~~~~l~------~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~--~~~~w~~ 197 (693)
..+.....|+++ +|+++||++||.+.. +.. ..++..++ |+|+||||+++|+.|+++ +..+|..
T Consensus 279 ~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~ 349 (1221)
T 1vt4_I 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKH 349 (1221)
T ss_dssp HHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHH
T ss_pred HhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhc
Confidence 644333456676 899999999999984 222 11223333 999999999999999866 6778865
Q ss_pred HHHHhccCCCchHHHHHHHhhccCcHhh-HhHHhhhhcccCCC--CHHHHHHHHHHcCC-CccchhhhhhcCCcEEEeC-
Q 037483 198 TLERLKRDPPNKIMSILQISFDGLQDSE-KKIFLDVACFFKWK--SREYVTKILEACGF-SPVIGIEVLIEKSLLIVDE- 272 (693)
Q Consensus 198 ~l~~l~~~~~~~~~~~l~~s~~~L~~~~-~~~~~~la~f~~~~--~~~~l~~~~~~~~~-~~~~~l~~L~~~sLi~~~~- 272 (693)
. ....+..+++.||+.|++++ |.||+++|+||.+. +.+.+..+|.+.+. .....+++|+++||++...
T Consensus 350 ~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~ 422 (1221)
T 1vt4_I 350 V-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422 (1221)
T ss_dssp C-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSS
T ss_pred C-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeCC
Confidence 3 35789999999999999999 99999999999865 56778888977652 2456799999999999863
Q ss_pred CCcEehhHHHHHHH
Q 037483 273 DNRLQMHDLLQELG 286 (693)
Q Consensus 273 ~~~~~~H~lv~~~~ 286 (693)
.++|+|||++++++
T Consensus 423 ~~rYrMHDLllELr 436 (1221)
T 1vt4_I 423 ESTISIPSIYLELK 436 (1221)
T ss_dssp SSEEBCCCHHHHHH
T ss_pred CCEEEehHHHHHHh
Confidence 56899999998854
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=2.7e-23 Score=213.11 Aligned_cols=220 Identities=25% Similarity=0.320 Sum_probs=179.9
Q ss_pred cccCcCccccccccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCcc
Q 037483 321 LKGCKNLSSLLISLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLR 400 (693)
Q Consensus 321 l~~~~~L~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~ 400 (693)
+.+ .+++.+|..+.++++|++|++++|.+. .+|..++.+++|++|+|++|.++.+|..+..+++|++|++++|...+.
T Consensus 88 L~~-n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~ 165 (328)
T 4fcg_A 88 LRS-VPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTE 165 (328)
T ss_dssp EES-SCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCC
T ss_pred ccC-CCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccc
Confidence 444 356788888999999999999998876 888889999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccccccccccCCCCccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchh
Q 037483 401 LPSSIDGCFKLENVSETLGQVEILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPV 480 (693)
Q Consensus 401 lp~~~~~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (693)
+|..+... .++..++++++|++|++++|.++.+|..+..+++|++|++++|.+....+
T Consensus 166 ~p~~~~~~----~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~------------------ 223 (328)
T 4fcg_A 166 LPEPLAST----DASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGP------------------ 223 (328)
T ss_dssp CCSCSEEE----C-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCG------------------
T ss_pred cChhHhhc----cchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCch------------------
Confidence 88866331 23345677899999999999999999999999999999999998764321
Q ss_pred hhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCc-ccCccccCCCCCCEEecccccceee-ccCc
Q 037483 481 ALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFV-TLPASISGLLNLKELELEDCALKLR-KSDC 558 (693)
Q Consensus 481 ~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~-~~~~ 558 (693)
.+..+++|+.|++++|.+ .+.+|..++.+++|++|+|++|++. .+|..+..+++|++|+|++|++... +...
T Consensus 224 -----~l~~l~~L~~L~Ls~n~~-~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 224 -----AIHHLPKLEELDLRGCTA-LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp -----GGGGCTTCCEEECTTCTT-CCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred -----hhccCCCCCEEECcCCcc-hhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence 577888999999999988 5678888999999999999998766 7888899999999999999887332 2334
Q ss_pred ccccccCCchhh
Q 037483 559 TIIKCIDSLKLL 570 (693)
Q Consensus 559 ~~l~~l~~l~~~ 570 (693)
..++++..+.+.
T Consensus 298 ~~L~~L~~l~l~ 309 (328)
T 4fcg_A 298 AQLPANCIILVP 309 (328)
T ss_dssp GGSCTTCEEECC
T ss_pred hhccCceEEeCC
Confidence 444444444433
No 6
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=3.7e-23 Score=210.80 Aligned_cols=220 Identities=19% Similarity=0.208 Sum_probs=167.7
Q ss_pred ccccccCCCCCCcEEEcCC-CCCcccchhhhcCccccceeccCCcCce-eecCCcCCCCCCCEEecCCCCCCccCCCCCC
Q 037483 329 SLLISLSSLKCLRTLELSG-CSKLKRFLEIVASMEDLSELYLDGTFIT-KLPLSIELLTGLELLNLNDCKNLLRLPSSID 406 (693)
Q Consensus 329 ~l~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~ 406 (693)
.+|..+.++++|++|++++ |.+.+.+|..+.++++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|..+.
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 146 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHh
Confidence 5677888899999999985 7777788888889999999999999888 7777888899999999999877766666554
Q ss_pred CCcccc-----------cccccccCCC-CccEEecCCCccc-cCCCccccCCCCCEEEccCCCCCCCCCCcccccccccc
Q 037483 407 GCFKLE-----------NVSETLGQVE-ILEELDISGTTIR-EPPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLM 473 (693)
Q Consensus 407 ~~~~L~-----------~lp~~l~~l~-~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 473 (693)
++++|+ .+|..++.++ +|++|++++|.++ .+|..+..++ |+.|++++|.+....
T Consensus 147 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~------------ 213 (313)
T 1ogq_A 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDA------------ 213 (313)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECC------------
T ss_pred cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcC------------
Confidence 444443 2344555555 5666666666655 3455555554 666666665543322
Q ss_pred CCCCchhhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCc-ccCccccCCCCCCEEecccccce
Q 037483 474 GKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFV-TLPASISGLLNLKELELEDCALK 552 (693)
Q Consensus 474 ~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~~~ 552 (693)
+..+..+++|+.|++++|.++ +.+| .+..+++|++|++++|.++ .+|..+..+++|++|+|++|++.
T Consensus 214 ----------~~~~~~l~~L~~L~L~~N~l~-~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 214 ----------SVLFGSDKNTQKIHLAKNSLA-FDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp ----------GGGCCTTSCCSEEECCSSEEC-CBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred ----------CHHHhcCCCCCEEECCCCcee-eecC-cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc
Confidence 226888999999999999994 3444 4888999999999999999 88999999999999999999997
Q ss_pred eeccCcccccccCCchhhhcc
Q 037483 553 LRKSDCTIIKCIDSLKLLVNN 573 (693)
Q Consensus 553 ~~~~~~~~l~~l~~l~~~~n~ 573 (693)
...+....+++|..+++.+|.
T Consensus 282 ~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 282 GEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp EECCCSTTGGGSCGGGTCSSS
T ss_pred ccCCCCccccccChHHhcCCC
Confidence 666666778888888777663
No 7
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=1.8e-22 Score=206.86 Aligned_cols=197 Identities=23% Similarity=0.286 Sum_probs=165.0
Q ss_pred CCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCcccccccc
Q 037483 337 LKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLENVSE 416 (693)
Q Consensus 337 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~lp~ 416 (693)
.++++.|++++|.+. .+|..+..+++|++|+|++|.++.+|..+..+++|++|+|++|.+ ..+|.
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l--------------~~lp~ 144 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPL--------------RALPA 144 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCC--------------CCCCG
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCcc--------------ccCcH
Confidence 578999999998765 778888889999999999999999999999999999999999843 35566
Q ss_pred cccCCCCccEEecCCCccc-cCCCcccc---------CCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcc
Q 037483 417 TLGQVEILEELDISGTTIR-EPPSSIFA---------IKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFS 486 (693)
Q Consensus 417 ~l~~l~~L~~L~l~~n~i~-~lp~~~~~---------l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (693)
.++++++|++|++++|++. .+|..+.. +++|++|++++|.+... +. .
T Consensus 145 ~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~----------------------~ 201 (328)
T 4fcg_A 145 SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL-PA----------------------S 201 (328)
T ss_dssp GGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCC-CG----------------------G
T ss_pred HHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcc-hH----------------------h
Confidence 7889999999999997554 66776654 99999999999987632 21 6
Q ss_pred cCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCc-ccCccccCCCCCCEEecccccceee-ccCccccccc
Q 037483 487 LSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFV-TLPASISGLLNLKELELEDCALKLR-KSDCTIIKCI 564 (693)
Q Consensus 487 l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~-~~~~~~l~~l 564 (693)
+.++++|+.|++++|.++. +|..++.+++|++|++++|++. .+|..+..+++|++|+|++|.+... ......+.+|
T Consensus 202 l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L 279 (328)
T 4fcg_A 202 IANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQL 279 (328)
T ss_dssp GGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTC
T ss_pred hcCCCCCCEEEccCCCCCc--CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCC
Confidence 7889999999999999953 8888999999999999999877 7888999999999999999987333 3345666777
Q ss_pred CCchhhhcc
Q 037483 565 DSLKLLVNN 573 (693)
Q Consensus 565 ~~l~~~~n~ 573 (693)
..|++.+|.
T Consensus 280 ~~L~L~~n~ 288 (328)
T 4fcg_A 280 EKLDLRGCV 288 (328)
T ss_dssp CEEECTTCT
T ss_pred CEEeCCCCC
Confidence 777776653
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.87 E-value=5.8e-22 Score=227.33 Aligned_cols=244 Identities=22% Similarity=0.248 Sum_probs=180.9
Q ss_pred ccccccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCce-eecCCcCCCCCCCEEecCCCCCCccCCCCCCC
Q 037483 329 SLLISLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFIT-KLPLSIELLTGLELLNLNDCKNLLRLPSSIDG 407 (693)
Q Consensus 329 ~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~ 407 (693)
.+|..+.++++|++|++++|.+.+..|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|..+.+
T Consensus 409 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 488 (768)
T 3rgz_A 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred ccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhc
Confidence 34456778888888888888877788888888888888888888887 67777888888999999998888888888877
Q ss_pred Ccccc-----------cccccccCCCCccEEecCCCccc-cCCCccccCCCCCEEEccCCCCCCCCCCcccccc----cc
Q 037483 408 CFKLE-----------NVSETLGQVEILEELDISGTTIR-EPPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFP----FN 471 (693)
Q Consensus 408 ~~~L~-----------~lp~~l~~l~~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~----~~ 471 (693)
|++|+ .+|..++.+++|++|++++|.++ .+|..+..+++|+.|++++|.+....|....... ..
T Consensus 489 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~ 568 (768)
T 3rgz_A 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCS
T ss_pred CCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhh
Confidence 77766 35778888999999999999888 5688889999999999999877655443211000 00
Q ss_pred c---------------------------cCCC-----------------CchhhhhhcccCCCCcCCeeeCCCCCCCCCC
Q 037483 472 L---------------------------MGKS-----------------LYPVALMLFSLSGLCSLSKLDLSYCGLGEGA 507 (693)
Q Consensus 472 ~---------------------------~~~~-----------------~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~ 507 (693)
. .+.. .......+..+..+++|+.|++++|.+ .+.
T Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l-~g~ 647 (768)
T 3rgz_A 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML-SGY 647 (768)
T ss_dssp TTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCC-BSC
T ss_pred ccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcc-ccc
Confidence 0 0000 000001122466778888888888888 577
Q ss_pred CCccCCCCCCCCEEeCCCCCCc-ccCccccCCCCCCEEecccccceeec-cCcccccccCCchhhhcc
Q 037483 508 IPNDIGNLCSLKELYLSKNNFV-TLPASISGLLNLKELELEDCALKLRK-SDCTIIKCIDSLKLLVNN 573 (693)
Q Consensus 508 ~p~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~-~~~~~l~~l~~l~~~~n~ 573 (693)
+|..++.+++|+.|+|++|.++ .+|..++++++|+.|+|++|++.... .....+..|..+++..|.
T Consensus 648 ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred CCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 8888888888888888888888 78888888888888888888885433 445666677777766663
No 9
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.86 E-value=8.5e-21 Score=190.88 Aligned_cols=223 Identities=19% Similarity=0.225 Sum_probs=166.0
Q ss_pred CccccccccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceee-cCCcCCCCCCCEEecCCCCCCccCCCC
Q 037483 326 NLSSLLISLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKL-PLSIELLTGLELLNLNDCKNLLRLPSS 404 (693)
Q Consensus 326 ~L~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~L~~~~~~~~lp~~ 404 (693)
.++.+|..+ .++|++|++++|.+....+..+..+++|++|++++|.++.+ |..+..+++|++|++++|...+.++
T Consensus 22 ~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~-- 97 (285)
T 1ozn_A 22 GLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-- 97 (285)
T ss_dssp CCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC--
T ss_pred CcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC--
Confidence 466666543 56899999999887777777889999999999999999977 6678999999999999986444432
Q ss_pred CCCCcccccccccccCCCCccEEecCCCccccC-CCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhh
Q 037483 405 IDGCFKLENVSETLGQVEILEELDISGTTIREP-PSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALM 483 (693)
Q Consensus 405 ~~~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (693)
|..+..+++|++|++++|.++.+ |..+..+++|++|++++|.+....+.
T Consensus 98 ----------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------------------- 147 (285)
T 1ozn_A 98 ----------PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD-------------------- 147 (285)
T ss_dssp ----------TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT--------------------
T ss_pred ----------HHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHh--------------------
Confidence 23456778888889988888877 55677888899999888877654332
Q ss_pred hcccCCCCcCCeeeCCCCCCCCCCCC-ccCCCCCCCCEEeCCCCCCccc-CccccCCCCCCEEecccccceeec-cCccc
Q 037483 484 LFSLSGLCSLSKLDLSYCGLGEGAIP-NDIGNLCSLKELYLSKNNFVTL-PASISGLLNLKELELEDCALKLRK-SDCTI 560 (693)
Q Consensus 484 ~~~l~~l~~L~~L~ls~n~l~~~~~p-~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~~~~~~-~~~~~ 560 (693)
.+..+++|+.|++++|.++. +| ..+..+++|++|++++|.++.+ |..+..+++|+.|++++|++.... .....
T Consensus 148 --~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 223 (285)
T 1ozn_A 148 --TFRDLGNLTHLFLHGNRISS--VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP 223 (285)
T ss_dssp --TTTTCTTCCEEECCSSCCCE--ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTT
T ss_pred --HhccCCCccEEECCCCcccc--cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHccc
Confidence 46778888888888888842 44 3578888888888888888855 677888888888888888874332 22445
Q ss_pred ccccCCchhhhc---chhhhHHHHHHHHH
Q 037483 561 IKCIDSLKLLVN---NGLAISMLQEYLEA 586 (693)
Q Consensus 561 l~~l~~l~~~~n---~~~~~~~~~~~~~~ 586 (693)
+.+|..+++.+| |.....++..|++.
T Consensus 224 l~~L~~L~l~~N~~~c~~~~~~~~~~l~~ 252 (285)
T 1ozn_A 224 LRALQYLRLNDNPWVCDCRARPLWAWLQK 252 (285)
T ss_dssp CTTCCEEECCSSCEECSGGGHHHHHHHHH
T ss_pred CcccCEEeccCCCccCCCCcHHHHHHHHh
Confidence 566666666666 44444455556653
No 10
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.86 E-value=1.3e-20 Score=201.81 Aligned_cols=224 Identities=20% Similarity=0.223 Sum_probs=136.8
Q ss_pred CCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeec-CCcCCCCCCCEEecCCCCCCccCCCCCCCCcccccc--
Q 037483 338 KCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLP-LSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLENV-- 414 (693)
Q Consensus 338 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~l-- 414 (693)
++++.|+|++|.+....+..+.++++|++|+|++|.++.++ ..+..+++|++|+|++|.+....+..+.++++|+.+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 34555555555444444444555555555555555555443 234455555555555554333222233333333221
Q ss_pred --------c-ccccCCCCccEEecCCC-ccccCCC-ccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhh
Q 037483 415 --------S-ETLGQVEILEELDISGT-TIREPPS-SIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALM 483 (693)
Q Consensus 415 --------p-~~l~~l~~L~~L~l~~n-~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (693)
| ..+.++++|++|++++| .+..++. .+..+++|++|++++|.+....
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~---------------------- 201 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP---------------------- 201 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC----------------------
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc----------------------
Confidence 1 23566677777777763 4445533 4666777777777777655331
Q ss_pred hcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccC-ccccCCCCCCEEecccccceee-ccCcccc
Q 037483 484 LFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLP-ASISGLLNLKELELEDCALKLR-KSDCTII 561 (693)
Q Consensus 484 ~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~n~~~~~-~~~~~~l 561 (693)
.+..+++|+.|++++|.++ +..|..+..+++|++|+|++|.++.++ ..+..+++|+.|+|++|++... ...+..+
T Consensus 202 --~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 202 --NLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp --CCTTCSSCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred --ccCCCcccCEEECCCCccC-ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 4667788888888888883 445677888888888888888888654 5678888888888888888432 3334556
Q ss_pred cccCCchhhhc---chhhhHHHHHHHHH
Q 037483 562 KCIDSLKLLVN---NGLAISMLQEYLEA 586 (693)
Q Consensus 562 ~~l~~l~~~~n---~~~~~~~~~~~~~~ 586 (693)
.+|..+++.+| |.+...++..|++.
T Consensus 279 ~~L~~L~L~~Np~~CdC~l~~l~~~~~~ 306 (440)
T 3zyj_A 279 HHLERIHLHHNPWNCNCDILWLSWWIKD 306 (440)
T ss_dssp TTCCEEECCSSCEECSSTTHHHHHHHHT
T ss_pred cCCCEEEcCCCCccCCCCchHHHHHHHh
Confidence 66677776665 66666677777763
No 11
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=1e-20 Score=203.56 Aligned_cols=234 Identities=21% Similarity=0.220 Sum_probs=153.4
Q ss_pred CccccccccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeec-CCcCCCCCCCEEecCCCCCCccCCCC
Q 037483 326 NLSSLLISLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLP-LSIELLTGLELLNLNDCKNLLRLPSS 404 (693)
Q Consensus 326 ~L~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~L~~~~~~~~lp~~ 404 (693)
+++.+|..+. ++|++|+|++|.+.+..+..+.++++|++|+|++|.++.++ ..+..+++|++|+|++|.+....+..
T Consensus 65 ~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 142 (452)
T 3zyi_A 65 GLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGA 142 (452)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTT
T ss_pred CcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhh
Confidence 3455554332 46777777777666666666777777777777777776554 45666777777777777554433333
Q ss_pred CCCCcccccc----------c-ccccCCCCccEEecCC-CccccCCC-ccccCCCCCEEEccCCCCCCCCCCcccccccc
Q 037483 405 IDGCFKLENV----------S-ETLGQVEILEELDISG-TTIREPPS-SIFAIKNLKKLSFSGCSGPPSSASWHLHFPFN 471 (693)
Q Consensus 405 ~~~~~~L~~l----------p-~~l~~l~~L~~L~l~~-n~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 471 (693)
+.++++|+.+ | ..+.++++|++|++++ +.+..++. .+..+++|++|++++|.+....
T Consensus 143 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~---------- 212 (452)
T 3zyi_A 143 FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP---------- 212 (452)
T ss_dssp SSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC----------
T ss_pred hcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc----------
Confidence 4444444322 1 2455666677777766 34444433 4566677777777766654331
Q ss_pred ccCCCCchhhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCccc-CccccCCCCCCEEeccccc
Q 037483 472 LMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTL-PASISGLLNLKELELEDCA 550 (693)
Q Consensus 472 ~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~ 550 (693)
.+..+++|+.|++++|.+ .+..|..+..+++|++|+|++|.++.+ |..+..+++|+.|+|++|+
T Consensus 213 --------------~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 213 --------------NLTPLVGLEELEMSGNHF-PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp --------------CCTTCTTCCEEECTTSCC-SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred --------------cccccccccEEECcCCcC-cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc
Confidence 467778889999999988 345577788889999999999988865 4677888899999999998
Q ss_pred cee-eccCcccccccCCchhhhc---chhhhHHHHHHHHH
Q 037483 551 LKL-RKSDCTIIKCIDSLKLLVN---NGLAISMLQEYLEA 586 (693)
Q Consensus 551 ~~~-~~~~~~~l~~l~~l~~~~n---~~~~~~~~~~~~~~ 586 (693)
+.. ....+..+.+|..+++.+| |.+...++..|++.
T Consensus 278 l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~~l~~~l~~ 317 (452)
T 3zyi_A 278 LSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLRE 317 (452)
T ss_dssp CSCCCTTSSTTCTTCCEEECCSSCEECSTTTHHHHHHHHH
T ss_pred CCccChHHhccccCCCEEEccCCCcCCCCCchHHHHHHHH
Confidence 843 2233455666777777665 66666667667653
No 12
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=3.9e-20 Score=185.84 Aligned_cols=185 Identities=25% Similarity=0.263 Sum_probs=134.7
Q ss_pred CccccccccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCC
Q 037483 326 NLSSLLISLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSI 405 (693)
Q Consensus 326 ~L~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~ 405 (693)
+++.+|..+. +++++|++++|.+.+..+..+..+++|++|+|++|.++.++.. ..+++|++|++++|.
T Consensus 21 ~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~--------- 88 (290)
T 1p9a_G 21 NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQ--------- 88 (290)
T ss_dssp CCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSC---------
T ss_pred CCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCc---------
Confidence 3445554432 5788888888777666677777888888888888888877654 677888888888773
Q ss_pred CCCcccccccccccCCCCccEEecCCCccccCC-CccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhh
Q 037483 406 DGCFKLENVSETLGQVEILEELDISGTTIREPP-SSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALML 484 (693)
Q Consensus 406 ~~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (693)
+..+|..+..+++|++|++++|.++.+| ..+..+++|++|++++|.+....+.
T Consensus 89 -----l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~--------------------- 142 (290)
T 1p9a_G 89 -----LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG--------------------- 142 (290)
T ss_dssp -----CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTT---------------------
T ss_pred -----CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChh---------------------
Confidence 3344455667777888888888888775 4577788888888888877654332
Q ss_pred cccCCCCcCCeeeCCCCCCCCCCCCc-cCCCCCCCCEEeCCCCCCcccCccccCCCCCCEEecccccc
Q 037483 485 FSLSGLCSLSKLDLSYCGLGEGAIPN-DIGNLCSLKELYLSKNNFVTLPASISGLLNLKELELEDCAL 551 (693)
Q Consensus 485 ~~l~~l~~L~~L~ls~n~l~~~~~p~-~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~ 551 (693)
.+..+++|+.|++++|.++. +|. .+..+++|+.|+|++|.++.+|..+..+++|+.|+|++|++
T Consensus 143 -~~~~l~~L~~L~L~~N~l~~--l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 143 -LLTPTPKLEKLSLANNNLTE--LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp -TTTTCTTCCEEECTTSCCSC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred -hcccccCCCEEECCCCcCCc--cCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence 46677788888888888743 544 45678888888888888888887777777888888888875
No 13
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.86 E-value=3.3e-21 Score=221.03 Aligned_cols=239 Identities=21% Similarity=0.199 Sum_probs=155.0
Q ss_pred CCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCce-eecCCcCCCCCCCEEecCCCCCCccCCCCCCCCcccc---
Q 037483 337 LKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFIT-KLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLE--- 412 (693)
Q Consensus 337 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~--- 412 (693)
+++|++|++++|.+.+.+|..+.++++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|..+..+++|+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 455666666666655566666666666666666666665 4555566666666666666666666665555444444
Q ss_pred --------cccccccCCCCccEEecCCCccc-cCCCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhh
Q 037483 413 --------NVSETLGQVEILEELDISGTTIR-EPPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALM 483 (693)
Q Consensus 413 --------~lp~~l~~l~~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (693)
.+|..++++++|++|++++|.++ .+|..++.+++|++|++++|.+....+
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p--------------------- 531 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP--------------------- 531 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECC---------------------
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCC---------------------
Confidence 23455556666666666666665 345556666666666666665543322
Q ss_pred hcccCCCCcCCeeeCCCCCCCCCCCC------------------------------------------------------
Q 037483 484 LFSLSGLCSLSKLDLSYCGLGEGAIP------------------------------------------------------ 509 (693)
Q Consensus 484 ~~~l~~l~~L~~L~ls~n~l~~~~~p------------------------------------------------------ 509 (693)
..+..+++|+.|++++|.+ .+.+|
T Consensus 532 -~~l~~l~~L~~L~Ls~N~l-~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 609 (768)
T 3rgz_A 532 -AELGDCRSLIWLDLNTNLF-NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609 (768)
T ss_dssp -GGGGGCTTCCEEECCSSEE-ESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGG
T ss_pred -HHHcCCCCCCEEECCCCcc-CCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccc
Confidence 2567778888888888866 23344
Q ss_pred ----------------ccCCCCCCCCEEeCCCCCCc-ccCccccCCCCCCEEecccccce-eeccCcccccccCCchhhh
Q 037483 510 ----------------NDIGNLCSLKELYLSKNNFV-TLPASISGLLNLKELELEDCALK-LRKSDCTIIKCIDSLKLLV 571 (693)
Q Consensus 510 ----------------~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~~~-~~~~~~~~l~~l~~l~~~~ 571 (693)
..++.+++|+.|+|++|+++ .+|..++++++|+.|+|++|.+. ..+.....++.|..|++..
T Consensus 610 ~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~ 689 (768)
T 3rgz_A 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 689 (768)
T ss_dssp TCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred ccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCC
Confidence 23455678899999999998 78888999999999999999885 3344566777777777776
Q ss_pred cchhhhHHHHHHHHHhcCCCCCceeEEeeCCCCCCCCccccC-------CCceEEEEcCCC
Q 037483 572 NNGLAISMLQEYLEAMSLSPPRQEFKIVVPGSEIPKWFMYQN-------EGSSITVTTPSY 625 (693)
Q Consensus 572 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~P~w~~~~~-------~~~~i~~~lp~~ 625 (693)
|... ..+|..+..-+ .+|.+++.+|..
T Consensus 690 N~l~---------------------------g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 690 NKLD---------------------------GRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp SCCE---------------------------ECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred Cccc---------------------------CcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 6332 14555554333 378899999874
No 14
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=7.7e-21 Score=195.59 Aligned_cols=200 Identities=19% Similarity=0.256 Sum_probs=107.5
Q ss_pred cCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCccccc
Q 037483 334 LSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLEN 413 (693)
Q Consensus 334 l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~ 413 (693)
+.++++|++|++++|.+.+..|..+.++++|++|++++|.++.+|..+. ++|++|++++|.+.+..+
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~----------- 138 (330)
T 1xku_A 72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRK----------- 138 (330)
T ss_dssp TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCH-----------
T ss_pred hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCH-----------
Confidence 4444444444444444443334444444444444444444444443332 344444444443322221
Q ss_pred ccccccCCCCccEEecCCCcccc---CCCccccCCCCCEEEccCCCCCCCCCCcccc-ccccccCCCCchhhhhhcccCC
Q 037483 414 VSETLGQVEILEELDISGTTIRE---PPSSIFAIKNLKKLSFSGCSGPPSSASWHLH-FPFNLMGKSLYPVALMLFSLSG 489 (693)
Q Consensus 414 lp~~l~~l~~L~~L~l~~n~i~~---lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~ 489 (693)
..+.++++|++|++++|.+.. .+..+..+++|++|++++|.+.......... ..+.+....+.. ..+..+..
T Consensus 139 --~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~--~~~~~~~~ 214 (330)
T 1xku_A 139 --SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITK--VDAASLKG 214 (330)
T ss_dssp --HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCE--ECTGGGTT
T ss_pred --hHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCc--cCHHHhcC
Confidence 235566666667776666652 2455666666666666666655432211000 000000000000 01125667
Q ss_pred CCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCccccCCCCCCEEecccccc
Q 037483 490 LCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPASISGLLNLKELELEDCAL 551 (693)
Q Consensus 490 l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~ 551 (693)
+++|+.|++++|.++ +..+..+..+++|++|++++|.++.+|..+..+++|++|++++|++
T Consensus 215 l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 215 LNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNI 275 (330)
T ss_dssp CTTCCEEECCSSCCC-EECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCC
T ss_pred CCCCCEEECCCCcCc-eeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcC
Confidence 777888888888773 3334467777788888888888887777777778888888888877
No 15
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.85 E-value=1.3e-20 Score=191.71 Aligned_cols=225 Identities=23% Similarity=0.198 Sum_probs=146.2
Q ss_pred ccccccc-cCCCCCCcEEEcCCCCCccc--chhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCC
Q 037483 327 LSSLLIS-LSSLKCLRTLELSGCSKLKR--FLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPS 403 (693)
Q Consensus 327 L~~l~~~-l~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~ 403 (693)
++.++.. +.++++|++|++++|.+... .+..+..+++|++|++++|.++.+|..+..+++|++|++++|.+.+..+
T Consensus 40 l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~- 118 (306)
T 2z66_A 40 LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE- 118 (306)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTT-
T ss_pred cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCccccccc-
Confidence 3344432 45666666666666554321 2344455666666666666666666556666666666666653322111
Q ss_pred CCCCCcccccccccccCCCCccEEecCCCccccC-CCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhh
Q 037483 404 SIDGCFKLENVSETLGQVEILEELDISGTTIREP-PSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVAL 482 (693)
Q Consensus 404 ~~~~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (693)
...+..+++|++|++++|.+... +..+..+++|++|++++|.+... .
T Consensus 119 -----------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------~ 166 (306)
T 2z66_A 119 -----------FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN---------------------F 166 (306)
T ss_dssp -----------TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG---------------------E
T ss_pred -----------chhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc---------------------c
Confidence 02356667777777777777654 45566777777777777754431 0
Q ss_pred hhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCc-cccCCCCCCEEecccccceee-ccCccc
Q 037483 483 MLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPA-SISGLLNLKELELEDCALKLR-KSDCTI 560 (693)
Q Consensus 483 ~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n~~~~~-~~~~~~ 560 (693)
.+..+..+++|+.|++++|.++ +..|..+..+++|++|++++|.++.++. .+..+++|++|++++|++... ......
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 245 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCC
T ss_pred chhHHhhCcCCCEEECCCCCcC-CcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHh
Confidence 1126788899999999999984 4457788999999999999999997764 678899999999999998433 233444
Q ss_pred c-cccCCchhhhc---chhhhHHHHHHHH
Q 037483 561 I-KCIDSLKLLVN---NGLAISMLQEYLE 585 (693)
Q Consensus 561 l-~~l~~l~~~~n---~~~~~~~~~~~~~ 585 (693)
+ .+|..+++.+| |.+...++..|+.
T Consensus 246 ~~~~L~~L~L~~N~~~~~c~~~~~~~~l~ 274 (306)
T 2z66_A 246 FPSSLAFLNLTQNDFACTCEHQSFLQWIK 274 (306)
T ss_dssp CCTTCCEEECTTCCEECSGGGHHHHHHHH
T ss_pred hhccCCEEEccCCCeecccChHHHHHHHH
Confidence 4 46777777777 4444455666665
No 16
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=1.2e-21 Score=199.67 Aligned_cols=211 Identities=21% Similarity=0.232 Sum_probs=148.0
Q ss_pred CCCcEEEcCCCCCcc--cchhhhcCccccceeccCC-cCce-eecCCcCCCCCCCEEecCCCCCCccCCCCCCCCccccc
Q 037483 338 KCLRTLELSGCSKLK--RFLEIVASMEDLSELYLDG-TFIT-KLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLEN 413 (693)
Q Consensus 338 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~L~~-~~l~-~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~ 413 (693)
.+++.|++++|.+.+ .+|..+.++++|++|++++ |.+. .+|..+..+++|++|++++|.+.+.+|..+.++++|+.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 589999999999887 8899999999999999995 8887 78888999999999999999887777766655554442
Q ss_pred -----------ccccccCCCCccEEecCCCccc-cCCCccccCC-CCCEEEccCCCCCCCCCCccccccccccCCCCchh
Q 037483 414 -----------VSETLGQVEILEELDISGTTIR-EPPSSIFAIK-NLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPV 480 (693)
Q Consensus 414 -----------lp~~l~~l~~L~~L~l~~n~i~-~lp~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (693)
+|..++.+++|++|++++|.++ .+|..+..++ +|++|++++|.+....+
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~------------------ 191 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP------------------ 191 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC------------------
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCC------------------
Confidence 3445555556666666666555 4455555555 55666665554432221
Q ss_pred hhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCccccCCCCCCEEecccccce-eeccCcc
Q 037483 481 ALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPASISGLLNLKELELEDCALK-LRKSDCT 559 (693)
Q Consensus 481 ~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~-~~~~~~~ 559 (693)
..+..++ |+.|++++|.+ .+..|..+..+++|+.|++++|.++..+..+..+++|++|++++|.+. .......
T Consensus 192 ----~~~~~l~-L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 265 (313)
T 1ogq_A 192 ----PTFANLN-LAFVDLSRNML-EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT 265 (313)
T ss_dssp ----GGGGGCC-CSEEECCSSEE-EECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGG
T ss_pred ----hHHhCCc-ccEEECcCCcc-cCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHh
Confidence 1445554 88888888877 345677777788888888888877755445777788888888888775 3333445
Q ss_pred cccccCCchhhhc
Q 037483 560 IIKCIDSLKLLVN 572 (693)
Q Consensus 560 ~l~~l~~l~~~~n 572 (693)
.+++|..|++..|
T Consensus 266 ~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 266 QLKFLHSLNVSFN 278 (313)
T ss_dssp GCTTCCEEECCSS
T ss_pred cCcCCCEEECcCC
Confidence 5555665555555
No 17
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.85 E-value=3.3e-20 Score=198.76 Aligned_cols=201 Identities=23% Similarity=0.249 Sum_probs=169.9
Q ss_pred ccccc-cccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecC-CcCCCCCCCEEecCCCCCCccCCCC
Q 037483 327 LSSLL-ISLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPL-SIELLTGLELLNLNDCKNLLRLPSS 404 (693)
Q Consensus 327 L~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~L~~~~~~~~lp~~ 404 (693)
++.++ ..+.++++|++|+|++|.+....+..+.++++|++|+|++|.++.++. .+..+++|++|+|++|.+....+..
T Consensus 76 i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~ 155 (440)
T 3zyj_A 76 IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYA 155 (440)
T ss_dssp CCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTT
T ss_pred CCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHH
Confidence 44444 468889999999999988777777889999999999999999998876 4788999999999999877666666
Q ss_pred CCCCcccccc-----------c-ccccCCCCccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCCccccccccc
Q 037483 405 IDGCFKLENV-----------S-ETLGQVEILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNL 472 (693)
Q Consensus 405 ~~~~~~L~~l-----------p-~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 472 (693)
+.++++|+.+ + ..+.++++|++|++++|.++.+| .+..+++|+.|++++|.+....+.
T Consensus 156 ~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~--------- 225 (440)
T 3zyj_A 156 FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPG--------- 225 (440)
T ss_dssp TTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCEECTT---------
T ss_pred hhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCccChh---------
Confidence 7666666543 2 35788999999999999999997 488999999999999987765433
Q ss_pred cCCCCchhhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCc-cccCCCCCCEEecccccc
Q 037483 473 MGKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPA-SISGLLNLKELELEDCAL 551 (693)
Q Consensus 473 ~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n~~ 551 (693)
.+.++++|+.|++++|.++ +..+..+..+++|++|+|++|+++.+|. .+..+++|+.|+|++|++
T Consensus 226 -------------~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 226 -------------SFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp -------------TTTTCTTCCEEECTTCCCC-EECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred -------------hhccCccCCEEECCCCcee-EEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 6888999999999999994 5556789999999999999999998874 568899999999999997
No 18
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.84 E-value=1.3e-20 Score=198.83 Aligned_cols=236 Identities=15% Similarity=0.092 Sum_probs=133.6
Q ss_pred ccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCC-cCCCCCCCEEecCCCCCCccCCCCCCCCccc
Q 037483 333 SLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLS-IELLTGLELLNLNDCKNLLRLPSSIDGCFKL 411 (693)
Q Consensus 333 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L 411 (693)
.+..+++|++|++++|.+.+..|..+.++++|++|++++|.++.+|.. +..+++|++|++++|.+.+..|..+.++++|
T Consensus 88 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 167 (390)
T 3o6n_A 88 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 167 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTC
T ss_pred hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCC
Confidence 566777777777777776666666677777777777777777777665 3677777777777776666555556555555
Q ss_pred cccc--------ccccCCCCccEEecCCCc-------------------cccCCCccccCCCCCEEEccCCCCCCCCCCc
Q 037483 412 ENVS--------ETLGQVEILEELDISGTT-------------------IREPPSSIFAIKNLKKLSFSGCSGPPSSASW 464 (693)
Q Consensus 412 ~~lp--------~~l~~l~~L~~L~l~~n~-------------------i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~ 464 (693)
+.+. ..++.+++|+.|++++|. +..+|.. ..++|+.|++++|.+.......
T Consensus 168 ~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~~~l~ 245 (390)
T 3o6n_A 168 QNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDTAWLL 245 (390)
T ss_dssp CEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCCGGGG
T ss_pred CEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecccc--ccccccEEECCCCCCcccHHHc
Confidence 5431 112233333333333333 3222211 1234555555555444321000
Q ss_pred cc--cccccccCCCCchhhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCccccCCCCCC
Q 037483 465 HL--HFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPASISGLLNLK 542 (693)
Q Consensus 465 ~~--~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~ 542 (693)
.. ...+.+....+. ...+..+..+++|+.|++++|.++. +|..+..+++|++|++++|.++.+|..+..+++|+
T Consensus 246 ~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~ 321 (390)
T 3o6n_A 246 NYPGLVEVDLSYNELE--KIMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLE 321 (390)
T ss_dssp GCTTCSEEECCSSCCC--EEESGGGTTCSSCCEEECCSSCCCE--EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCS
T ss_pred CCCCccEEECCCCcCC--CcChhHccccccCCEEECCCCcCcc--cCcccCCCCCCCEEECCCCcceecCccccccCcCC
Confidence 00 000000000000 0112256667777777777777743 66666677777777777777777777777777777
Q ss_pred EEecccccceeeccCcccccccCCchhhhcchhh
Q 037483 543 ELELEDCALKLRKSDCTIIKCIDSLKLLVNNGLA 576 (693)
Q Consensus 543 ~L~L~~n~~~~~~~~~~~l~~l~~l~~~~n~~~~ 576 (693)
+|++++|++... ....+++|..+++.+|...+
T Consensus 322 ~L~L~~N~i~~~--~~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 322 NLYLDHNSIVTL--KLSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp EEECCSSCCCCC--CCCTTCCCSEEECCSSCEEH
T ss_pred EEECCCCcccee--CchhhccCCEEEcCCCCccc
Confidence 777777776322 24455566666666664443
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.84 E-value=2.5e-20 Score=200.99 Aligned_cols=86 Identities=34% Similarity=0.300 Sum_probs=63.9
Q ss_pred ccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCccc-CccccCCCCCCEEecccccceeec-cCcccccc
Q 037483 486 SLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTL-PASISGLLNLKELELEDCALKLRK-SDCTIIKC 563 (693)
Q Consensus 486 ~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~~~~~~-~~~~~l~~ 563 (693)
.+.++++|+.|++++|.+ .+..|..+..+++|++|+|++|.++.+ |..+..+++|++|++++|++.... ..+..+++
T Consensus 318 ~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 396 (455)
T 3v47_A 318 AFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTS 396 (455)
T ss_dssp TTTTCTTCCEEECCSSCC-CEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred HhcCcccCCEEECCCCcc-CCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCc
Confidence 567788888888888888 344467778888888888888888865 567888888888888888874322 23456666
Q ss_pred cCCchhhhc
Q 037483 564 IDSLKLLVN 572 (693)
Q Consensus 564 l~~l~~~~n 572 (693)
|..+++.+|
T Consensus 397 L~~L~l~~N 405 (455)
T 3v47_A 397 LQKIWLHTN 405 (455)
T ss_dssp CCEEECCSS
T ss_pred ccEEEccCC
Confidence 777776666
No 20
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=3.4e-20 Score=190.88 Aligned_cols=201 Identities=17% Similarity=0.220 Sum_probs=114.4
Q ss_pred ccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCcccc
Q 037483 333 SLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLE 412 (693)
Q Consensus 333 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~ 412 (693)
.+.++++|++|++++|.+.+..|..+.++++|++|++++|.++.+|..+. ++|++|++++|.+....+
T Consensus 73 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~---------- 140 (332)
T 2ft3_A 73 DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPK---------- 140 (332)
T ss_dssp TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCS----------
T ss_pred HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCH----------
Confidence 34555555555555554444444455555555555555555555544333 455555555553332211
Q ss_pred cccccccCCCCccEEecCCCcccc---CCCccccCCCCCEEEccCCCCCCCCCCccc-cccccccCCCCchhhhhhcccC
Q 037483 413 NVSETLGQVEILEELDISGTTIRE---PPSSIFAIKNLKKLSFSGCSGPPSSASWHL-HFPFNLMGKSLYPVALMLFSLS 488 (693)
Q Consensus 413 ~lp~~l~~l~~L~~L~l~~n~i~~---lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~ 488 (693)
..+.++++|++|++++|.++. .|..+..+ +|++|++++|.+......... .....+....+.. ..+..+.
T Consensus 141 ---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~--~~~~~l~ 214 (332)
T 2ft3_A 141 ---GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQA--IELEDLL 214 (332)
T ss_dssp ---GGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCC--CCTTSST
T ss_pred ---hHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCccccCCCCEEECCCCcCCc--cCHHHhc
Confidence 235566666666666666642 24444445 666666666655443221100 0000000000000 0112577
Q ss_pred CCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCccccCCCCCCEEecccccce
Q 037483 489 GLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPASISGLLNLKELELEDCALK 552 (693)
Q Consensus 489 ~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~ 552 (693)
.+++|+.|++++|.++ +..+..+..+++|++|++++|.++.+|..+..+++|++|++++|++.
T Consensus 215 ~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 215 RYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNIT 277 (332)
T ss_dssp TCTTCSCCBCCSSCCC-CCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCC
T ss_pred CCCCCCEEECCCCcCC-cCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCC
Confidence 7888888888888883 34445678888888888888888888888888888888888888873
No 21
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.84 E-value=3.9e-20 Score=198.90 Aligned_cols=202 Identities=25% Similarity=0.269 Sum_probs=169.1
Q ss_pred Ccccc-ccccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCC-cCCCCCCCEEecCCCCCCccCCC
Q 037483 326 NLSSL-LISLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLS-IELLTGLELLNLNDCKNLLRLPS 403 (693)
Q Consensus 326 ~L~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~L~~~~~~~~lp~ 403 (693)
+++.+ +..|.++++|++|+|++|.+.+..+..+.++++|++|+|++|.++.++.. +..+++|++|+|++|.+....+.
T Consensus 86 ~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 165 (452)
T 3zyi_A 86 NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSY 165 (452)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTT
T ss_pred cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHh
Confidence 34444 34688899999999999988777778899999999999999999988765 78899999999999987765555
Q ss_pred CCCCCcccccc-----------c-ccccCCCCccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCCcccccccc
Q 037483 404 SIDGCFKLENV-----------S-ETLGQVEILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFN 471 (693)
Q Consensus 404 ~~~~~~~L~~l-----------p-~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 471 (693)
.+.++++|+.+ + ..+.++++|++|++++|.++.+| .+..+++|+.|++++|.+....+.
T Consensus 166 ~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~-------- 236 (452)
T 3zyi_A 166 AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPG-------- 236 (452)
T ss_dssp TTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEECGG--------
T ss_pred HHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcccCcc--------
Confidence 66666655533 3 25788999999999999999986 588999999999999987755332
Q ss_pred ccCCCCchhhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccC-ccccCCCCCCEEeccccc
Q 037483 472 LMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLP-ASISGLLNLKELELEDCA 550 (693)
Q Consensus 472 ~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~n~ 550 (693)
.+.++++|+.|++++|.+ .+..+..+..+++|++|+|++|+++.+| ..+..+++|+.|+|++|+
T Consensus 237 --------------~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 237 --------------SFHGLSSLKKLWVMNSQV-SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp --------------GGTTCTTCCEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred --------------cccCccCCCEEEeCCCcC-ceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 688999999999999999 4556778999999999999999999887 456889999999999998
Q ss_pred c
Q 037483 551 L 551 (693)
Q Consensus 551 ~ 551 (693)
+
T Consensus 302 ~ 302 (452)
T 3zyi_A 302 W 302 (452)
T ss_dssp E
T ss_pred c
Confidence 7
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=1.9e-20 Score=208.47 Aligned_cols=236 Identities=14% Similarity=0.094 Sum_probs=133.8
Q ss_pred ccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCC-cCCCCCCCEEecCCCCCCccCCCCCCCCccc
Q 037483 333 SLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLS-IELLTGLELLNLNDCKNLLRLPSSIDGCFKL 411 (693)
Q Consensus 333 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L 411 (693)
.+..+++|++|+|++|.+.+..|..++++++|++|+|++|.++.+|.. +..+++|++|+|++|.+.+..|..+.++++|
T Consensus 94 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 173 (597)
T 3oja_B 94 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 173 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC
T ss_pred HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcC
Confidence 567777777777777776666666677777777777777777777665 3677777777777777766666666666655
Q ss_pred cccc--------ccccCCCCccEEecCCCccc-------------------cCCCccccCCCCCEEEccCCCCCCCCCCc
Q 037483 412 ENVS--------ETLGQVEILEELDISGTTIR-------------------EPPSSIFAIKNLKKLSFSGCSGPPSSASW 464 (693)
Q Consensus 412 ~~lp--------~~l~~l~~L~~L~l~~n~i~-------------------~lp~~~~~l~~L~~L~l~~~~~~~~~~~~ 464 (693)
+.+. ..++.+++|+.|++++|.++ .+|..+ .++|+.|++++|.+.......
T Consensus 174 ~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~~~l~ 251 (597)
T 3oja_B 174 QNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTAWLL 251 (597)
T ss_dssp CEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCCGGGG
T ss_pred cEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCChhhc
Confidence 5431 11233334433333333332 221111 134455555554443321000
Q ss_pred cc--cccccccCCCCchhhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCccccCCCCCC
Q 037483 465 HL--HFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPASISGLLNLK 542 (693)
Q Consensus 465 ~~--~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~ 542 (693)
.. ...+.+....+. ...+..+..+++|+.|+|++|.++. +|..+..+++|+.|+|++|.++.+|..+..+++|+
T Consensus 252 ~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~ 327 (597)
T 3oja_B 252 NYPGLVEVDLSYNELE--KIMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLE 327 (597)
T ss_dssp GCTTCSEEECCSSCCC--EEESGGGTTCSSCCEEECTTSCCCE--EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCS
T ss_pred cCCCCCEEECCCCccC--CCCHHHhcCccCCCEEECCCCCCCC--CCcccccCCCCcEEECCCCCCCccCcccccCCCCC
Confidence 00 000000000000 0112256677777777777777743 66666667777777777777777777777777777
Q ss_pred EEecccccceeeccCcccccccCCchhhhcchhh
Q 037483 543 ELELEDCALKLRKSDCTIIKCIDSLKLLVNNGLA 576 (693)
Q Consensus 543 ~L~L~~n~~~~~~~~~~~l~~l~~l~~~~n~~~~ 576 (693)
+|+|++|++... ....+.+|..|++.+|...+
T Consensus 328 ~L~L~~N~l~~~--~~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 328 NLYLDHNSIVTL--KLSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp EEECCSSCCCCC--CCCTTCCCSEEECCSSCEEH
T ss_pred EEECCCCCCCCc--ChhhcCCCCEEEeeCCCCCC
Confidence 777777776322 24445556666666664443
No 23
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=1.3e-20 Score=191.68 Aligned_cols=210 Identities=20% Similarity=0.216 Sum_probs=171.5
Q ss_pred CccccccccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceee---cCCcCCCCCCCEEecCCCCCCccCC
Q 037483 326 NLSSLLISLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKL---PLSIELLTGLELLNLNDCKNLLRLP 402 (693)
Q Consensus 326 ~L~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l---~~~~~~l~~L~~L~L~~~~~~~~lp 402 (693)
.++.+|..+ .++|++|++++|.+....+..+.++++|++|++++|.++.+ +..+..+++|++|++++|.
T Consensus 18 ~l~~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~------ 89 (306)
T 2z66_A 18 GLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG------ 89 (306)
T ss_dssp CCSSCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS------
T ss_pred CcccCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc------
Confidence 466777544 36899999999887654455688999999999999998855 5566789999999999983
Q ss_pred CCCCCCcccccccccccCCCCccEEecCCCccccCCC--ccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchh
Q 037483 403 SSIDGCFKLENVSETLGQVEILEELDISGTTIREPPS--SIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPV 480 (693)
Q Consensus 403 ~~~~~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (693)
+..+|..+..+++|++|++++|.++.++. .+..+++|++|++++|.+....+.
T Consensus 90 --------i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------------- 144 (306)
T 2z66_A 90 --------VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG----------------- 144 (306)
T ss_dssp --------EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT-----------------
T ss_pred --------cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchh-----------------
Confidence 44566778899999999999999998864 788999999999999987654332
Q ss_pred hhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCccc-CccccCCCCCCEEecccccceee-ccCc
Q 037483 481 ALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTL-PASISGLLNLKELELEDCALKLR-KSDC 558 (693)
Q Consensus 481 ~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~~~~~-~~~~ 558 (693)
.+..+++|+.|++++|.++...+|..+..+++|++|++++|.++.+ |..+..+++|++|++++|++... ....
T Consensus 145 -----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 219 (306)
T 2z66_A 145 -----IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 219 (306)
T ss_dssp -----TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGG
T ss_pred -----hcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhc
Confidence 5788899999999999985435788999999999999999999977 67889999999999999998432 2244
Q ss_pred ccccccCCchhhhcc
Q 037483 559 TIIKCIDSLKLLVNN 573 (693)
Q Consensus 559 ~~l~~l~~l~~~~n~ 573 (693)
..+.+|..|++..|.
T Consensus 220 ~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 220 KCLNSLQVLDYSLNH 234 (306)
T ss_dssp TTCTTCCEEECTTSC
T ss_pred cCcccCCEeECCCCC
Confidence 556677777776664
No 24
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.83 E-value=9.3e-20 Score=183.26 Aligned_cols=191 Identities=23% Similarity=0.276 Sum_probs=162.6
Q ss_pred Cccccc-cccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcC-ceee-cCCcCCCCCCCEEecCCCCCCccCC
Q 037483 326 NLSSLL-ISLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTF-ITKL-PLSIELLTGLELLNLNDCKNLLRLP 402 (693)
Q Consensus 326 ~L~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~l-~~~~~~l~~L~~L~L~~~~~~~~lp 402 (693)
+++.++ ..+.++++|++|++++|.+.+..+..+..+++|++|++++|. ++.+ +..+..+++|++|++++|.+.+..|
T Consensus 43 ~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 122 (285)
T 1ozn_A 43 RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP 122 (285)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECH
Confidence 345555 358899999999999998877778889999999999999997 8877 6678999999999999997654433
Q ss_pred CCCCCCcccccccccccCCCCccEEecCCCccccCCC-ccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhh
Q 037483 403 SSIDGCFKLENVSETLGQVEILEELDISGTTIREPPS-SIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVA 481 (693)
Q Consensus 403 ~~~~~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (693)
..+.++++|++|++++|.++.++. .+..+++|++|++++|.+....+.
T Consensus 123 -------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------------ 171 (285)
T 1ozn_A 123 -------------GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER------------------ 171 (285)
T ss_dssp -------------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT------------------
T ss_pred -------------hHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH------------------
Confidence 345778899999999999998865 478999999999999987654322
Q ss_pred hhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccC-ccccCCCCCCEEecccccce
Q 037483 482 LMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLP-ASISGLLNLKELELEDCALK 552 (693)
Q Consensus 482 ~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~n~~~ 552 (693)
.+..+++|+.|++++|.+ .+..|..+..+++|++|++++|.++.+| ..+..+++|+.|++++|++.
T Consensus 172 ----~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 172 ----AFRGLHSLDRLLLHQNRV-AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp ----TTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred ----HhcCccccCEEECCCCcc-cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 578889999999999999 4556888999999999999999999888 45899999999999999984
No 25
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.83 E-value=1.5e-20 Score=210.57 Aligned_cols=245 Identities=16% Similarity=0.150 Sum_probs=180.5
Q ss_pred cccCcCccccccccCCCCCCcEEEcCCCC-Ccc-cchhhhcCc------cccceeccCCcCceeecC--CcCCCCCCCEE
Q 037483 321 LKGCKNLSSLLISLSSLKCLRTLELSGCS-KLK-RFLEIVASM------EDLSELYLDGTFITKLPL--SIELLTGLELL 390 (693)
Q Consensus 321 l~~~~~L~~l~~~l~~l~~L~~L~l~~~~-~~~-~~~~~~~~l------~~L~~L~L~~~~l~~l~~--~~~~l~~L~~L 390 (693)
+.++.-...+|..+.++++|++|++++|. +.+ .+|..++.+ ++|++|++++|.++.+|. .+..+++|++|
T Consensus 256 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L 335 (636)
T 4eco_A 256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGML 335 (636)
T ss_dssp EECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEE
T ss_pred ecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEE
Confidence 44554455667788999999999999998 766 788888776 999999999999999998 89999999999
Q ss_pred ecCCCCCCccCCCCCCCCcccc----------cccccccCCCC-ccEEecCCCccccCCCccccCC--CCCEEEccCCCC
Q 037483 391 NLNDCKNLLRLPSSIDGCFKLE----------NVSETLGQVEI-LEELDISGTTIREPPSSIFAIK--NLKKLSFSGCSG 457 (693)
Q Consensus 391 ~L~~~~~~~~lp~~~~~~~~L~----------~lp~~l~~l~~-L~~L~l~~n~i~~lp~~~~~l~--~L~~L~l~~~~~ 457 (693)
++++|.+.+.+| .+.++++|+ .+|..++++++ |++|++++|.++.+|..+..++ +|++|++++|.+
T Consensus 336 ~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l 414 (636)
T 4eco_A 336 ECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEI 414 (636)
T ss_dssp ECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCT
T ss_pred eCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcC
Confidence 999999988999 776665555 46778889999 9999999999999998877655 899999999988
Q ss_pred CCCCCCccc-----------cccccccCCCCchhhhhh-cccCCCCcCCeeeCCCCCCCCCCCCccCCC--------CCC
Q 037483 458 PPSSASWHL-----------HFPFNLMGKSLYPVALML-FSLSGLCSLSKLDLSYCGLGEGAIPNDIGN--------LCS 517 (693)
Q Consensus 458 ~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~--------l~~ 517 (693)
....+.... ...+.+....+. ..+ ..+..+++|+.|++++|.++ .+|..+.. +++
T Consensus 415 ~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~---~lp~~~~~~l~~L~~L~Ls~N~l~--~i~~~~~~~~~~~~~~l~~ 489 (636)
T 4eco_A 415 GSVDGKNFDPLDPTPFKGINVSSINLSNNQIS---KFPKELFSTGSPLSSINLMGNMLT--EIPKNSLKDENENFKNTYL 489 (636)
T ss_dssp TTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC---SCCTHHHHTTCCCSEEECCSSCCS--BCCSSSSEETTEECTTGGG
T ss_pred CCcchhhhcccccccccCCCCCEEECcCCccC---cCCHHHHccCCCCCEEECCCCCCC--CcCHHHhccccccccccCC
Confidence 765443211 000111111111 111 12445778888888888884 46654332 237
Q ss_pred CCEEeCCCCCCcccCcccc--CCCCCCEEecccccceeeccCcccccccCCchhhh
Q 037483 518 LKELYLSKNNFVTLPASIS--GLLNLKELELEDCALKLRKSDCTIIKCIDSLKLLV 571 (693)
Q Consensus 518 L~~L~L~~n~l~~lp~~l~--~l~~L~~L~L~~n~~~~~~~~~~~l~~l~~l~~~~ 571 (693)
|++|+|++|.++.+|..+. .+++|+.|+|++|++...+.....+.+|..|++..
T Consensus 490 L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~ 545 (636)
T 4eco_A 490 LTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRN 545 (636)
T ss_dssp CCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCS
T ss_pred ccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCC
Confidence 8888888888888887776 78888888888888754444455566666666543
No 26
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.83 E-value=2.7e-20 Score=212.15 Aligned_cols=244 Identities=15% Similarity=0.137 Sum_probs=159.8
Q ss_pred ccCcCccccccccCCCCCCcEEEcCCCC-Ccc-cchhhhcCcc-------ccceeccCCcCceeecC--CcCCCCCCCEE
Q 037483 322 KGCKNLSSLLISLSSLKCLRTLELSGCS-KLK-RFLEIVASME-------DLSELYLDGTFITKLPL--SIELLTGLELL 390 (693)
Q Consensus 322 ~~~~~L~~l~~~l~~l~~L~~L~l~~~~-~~~-~~~~~~~~l~-------~L~~L~L~~~~l~~l~~--~~~~l~~L~~L 390 (693)
.+|.-...+|..+.++++|++|++++|. +.+ .+|..++.++ +|++|+|++|.++.+|. .+..+++|+.|
T Consensus 499 s~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L 578 (876)
T 4ecn_A 499 YNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLL 578 (876)
T ss_dssp ESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEE
T ss_pred cCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEE
Confidence 3333344455567788888888888887 555 6777666555 88888888888888887 78888888888
Q ss_pred ecCCCCCCccCCCCCCCCcccc----------cccccccCCCC-ccEEecCCCccccCCCccccCCC--CCEEEccCCCC
Q 037483 391 NLNDCKNLLRLPSSIDGCFKLE----------NVSETLGQVEI-LEELDISGTTIREPPSSIFAIKN--LKKLSFSGCSG 457 (693)
Q Consensus 391 ~L~~~~~~~~lp~~~~~~~~L~----------~lp~~l~~l~~-L~~L~l~~n~i~~lp~~~~~l~~--L~~L~l~~~~~ 457 (693)
+|++|.+. .+| .+.++++|+ .+|..+.++++ |++|++++|.++.+|..+..++. |+.|++++|.+
T Consensus 579 ~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l 656 (876)
T 4ecn_A 579 DCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKI 656 (876)
T ss_dssp ECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCT
T ss_pred ECCCCCcc-cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcC
Confidence 88888766 777 665555444 45666777777 88888888877777776665543 77778877776
Q ss_pred CCCCCCccc---------cccccccCCCCchhhhhhc-ccCCCCcCCeeeCCCCCCCCCCCCccCCC--------CCCCC
Q 037483 458 PPSSASWHL---------HFPFNLMGKSLYPVALMLF-SLSGLCSLSKLDLSYCGLGEGAIPNDIGN--------LCSLK 519 (693)
Q Consensus 458 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~ls~n~l~~~~~p~~l~~--------l~~L~ 519 (693)
....+.... ...+.+....+. .++. .+..+++|+.|+|++|.++ .+|..+.. +++|+
T Consensus 657 ~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~---~lp~~~~~~l~~L~~L~Ls~N~L~--~ip~~~~~~~~~~l~nl~~L~ 731 (876)
T 4ecn_A 657 GSEGRNISCSMDDYKGINASTVTLSYNEIQ---KFPTELFATGSPISTIILSNNLMT--SIPENSLKPKDGNYKNTYLLT 731 (876)
T ss_dssp TTTSSSCSSCTTTCCCCCEEEEECCSSCCC---SCCHHHHHTTCCCSEEECCSCCCS--CCCTTSSSCTTSCCTTGGGCC
T ss_pred CCccccchhhhccccCCCcCEEEccCCcCC---ccCHHHHccCCCCCEEECCCCcCC--ccChHHhccccccccccCCcc
Confidence 654332110 000111111111 1111 2346778888888888874 46654433 23788
Q ss_pred EEeCCCCCCcccCcccc--CCCCCCEEecccccceeeccCcccccccCCchhhhc
Q 037483 520 ELYLSKNNFVTLPASIS--GLLNLKELELEDCALKLRKSDCTIIKCIDSLKLLVN 572 (693)
Q Consensus 520 ~L~L~~n~l~~lp~~l~--~l~~L~~L~L~~n~~~~~~~~~~~l~~l~~l~~~~n 572 (693)
+|+|++|+++.+|..+. .+++|+.|+|++|++...+.....+.+|..|++..|
T Consensus 732 ~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N 786 (876)
T 4ecn_A 732 TIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQ 786 (876)
T ss_dssp EEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCC
T ss_pred EEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCC
Confidence 88888888888887776 788888888888887544444455566666655543
No 27
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.83 E-value=2.4e-19 Score=178.62 Aligned_cols=188 Identities=22% Similarity=0.255 Sum_probs=143.2
Q ss_pred CccccccccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCc-CCCCCCCEEecCCCCCCccCCCC
Q 037483 326 NLSSLLISLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSI-ELLTGLELLNLNDCKNLLRLPSS 404 (693)
Q Consensus 326 ~L~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~-~~l~~L~~L~L~~~~~~~~lp~~ 404 (693)
+++.+|..+. ++|++|++++|.+....+..+.++++|++|++++|.++.++..+ ..+++|++|++++|.+....+
T Consensus 27 ~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~-- 102 (270)
T 2o6q_A 27 KLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPI-- 102 (270)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCT--
T ss_pred CCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCH--
Confidence 4555664443 57889999888776666667888889999999998888887654 778899999998885433221
Q ss_pred CCCCcccccccccccCCCCccEEecCCCccccCCC-ccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhh
Q 037483 405 IDGCFKLENVSETLGQVEILEELDISGTTIREPPS-SIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALM 483 (693)
Q Consensus 405 ~~~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (693)
..+..+++|++|++++|.++.++. .+..+++|++|++++|.+....+.
T Consensus 103 -----------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-------------------- 151 (270)
T 2o6q_A 103 -----------GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG-------------------- 151 (270)
T ss_dssp -----------TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT--------------------
T ss_pred -----------hHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHh--------------------
Confidence 235677888999999998888754 467889999999998877655332
Q ss_pred hcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCc-cccCCCCCCEEecccccc
Q 037483 484 LFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPA-SISGLLNLKELELEDCAL 551 (693)
Q Consensus 484 ~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n~~ 551 (693)
.+..+++|+.|++++|.++. ..+..+..+++|++|+|++|.++.+|. .+..+++|+.|+|++|++
T Consensus 152 --~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 152 --VFDKLTSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp --TTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred --HccCCcccceeEecCCcCcE-eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 46778889999999998843 333457888899999999998888775 477888999999999876
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.83 E-value=7.8e-20 Score=197.14 Aligned_cols=85 Identities=21% Similarity=0.202 Sum_probs=41.6
Q ss_pred cCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCccc-CccccCCCCCCEEecccccceee-ccCccccccc
Q 037483 487 LSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTL-PASISGLLNLKELELEDCALKLR-KSDCTIIKCI 564 (693)
Q Consensus 487 l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~~~~~-~~~~~~l~~l 564 (693)
+..+++|+.|++++|.++ +..|..+..+++|++|+|++|.++.+ |..+..+++|++|+|++|++... ......+++|
T Consensus 295 ~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 373 (455)
T 3v47_A 295 FSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNL 373 (455)
T ss_dssp TTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred cccCCCCCEEECCCCccc-ccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccc
Confidence 444555555555555552 23344555555555555555555544 23445555555555555555322 2233344444
Q ss_pred CCchhhhc
Q 037483 565 DSLKLLVN 572 (693)
Q Consensus 565 ~~l~~~~n 572 (693)
..|++.+|
T Consensus 374 ~~L~L~~N 381 (455)
T 3v47_A 374 KELALDTN 381 (455)
T ss_dssp CEEECCSS
T ss_pred cEEECCCC
Confidence 44444443
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.83 E-value=5.8e-20 Score=199.32 Aligned_cols=238 Identities=18% Similarity=0.217 Sum_probs=149.1
Q ss_pred ccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCC-cCCCCCCCEEecCCCCCCccCCCCCCCCccc
Q 037483 333 SLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLS-IELLTGLELLNLNDCKNLLRLPSSIDGCFKL 411 (693)
Q Consensus 333 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L 411 (693)
.+.++++|++|+|++|.+.+..|..+.++++|++|+|++|.++.+|.. +..+++|++|+|++|.+.+..|..+.++++|
T Consensus 51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 130 (477)
T 2id5_A 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130 (477)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccC
Confidence 566666666666666665555566666666666666666666666543 4566666666666666666656566555555
Q ss_pred ccc-----------cccccCCCCccEEecCCCccccCCC-ccccCCCCCEEEccCCCCCCCCCCcccc------------
Q 037483 412 ENV-----------SETLGQVEILEELDISGTTIREPPS-SIFAIKNLKKLSFSGCSGPPSSASWHLH------------ 467 (693)
Q Consensus 412 ~~l-----------p~~l~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~------------ 467 (693)
+.+ +..+.++++|++|++++|.++.+|. .+..+++|+.|++++|.+....+.....
T Consensus 131 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~ 210 (477)
T 2id5_A 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210 (477)
T ss_dssp CEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECC
T ss_pred CEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCC
Confidence 533 2345556666666666666665543 3455555555555555443322111000
Q ss_pred ----------------ccccccCCCCchhhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCccc
Q 037483 468 ----------------FPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTL 531 (693)
Q Consensus 468 ----------------~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~l 531 (693)
..+.+....+.. .....+.++++|+.|++++|.++ +..+..+..+++|++|+|++|.++.+
T Consensus 211 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~ 287 (477)
T 2id5_A 211 PYLDTMTPNCLYGLNLTSLSITHCNLTA--VPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVV 287 (477)
T ss_dssp TTCCEECTTTTTTCCCSEEEEESSCCCS--CCHHHHTTCTTCCEEECCSSCCC-EECTTSCTTCTTCCEEECCSSCCSEE
T ss_pred ccccccCcccccCccccEEECcCCcccc--cCHHHhcCccccCeeECCCCcCC-ccChhhccccccCCEEECCCCccceE
Confidence 000011111110 01125678899999999999984 44456788999999999999999966
Q ss_pred -CccccCCCCCCEEecccccceee-ccCcccccccCCchhhhcc
Q 037483 532 -PASISGLLNLKELELEDCALKLR-KSDCTIIKCIDSLKLLVNN 573 (693)
Q Consensus 532 -p~~l~~l~~L~~L~L~~n~~~~~-~~~~~~l~~l~~l~~~~n~ 573 (693)
|..+..+++|+.|+|++|.+... ...+..+.+|..+++.+|.
T Consensus 288 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 288 EPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred CHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence 67889999999999999998433 3344667777778777773
No 30
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.83 E-value=1.2e-19 Score=203.08 Aligned_cols=257 Identities=22% Similarity=0.188 Sum_probs=167.7
Q ss_pred ccccccccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCce-eecCC-cCCCCCCCEEecCCCCCCccC--C
Q 037483 327 LSSLLISLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFIT-KLPLS-IELLTGLELLNLNDCKNLLRL--P 402 (693)
Q Consensus 327 L~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~l~~~-~~~l~~L~~L~L~~~~~~~~l--p 402 (693)
++.+|..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+. .++.. +..+++|++|++++|.+.+.. |
T Consensus 290 l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 369 (606)
T 3t6q_A 290 LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369 (606)
T ss_dssp CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEEST
T ss_pred cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcc
Confidence 4455556777778888888877766666666777777777777777665 45443 667777777777777665554 5
Q ss_pred CCCCCCcccccc-----------cccccCCCCccEEecCCCccccC-C-CccccCCCCCEEEccCCCCCCCCCCcccc--
Q 037483 403 SSIDGCFKLENV-----------SETLGQVEILEELDISGTTIREP-P-SSIFAIKNLKKLSFSGCSGPPSSASWHLH-- 467 (693)
Q Consensus 403 ~~~~~~~~L~~l-----------p~~l~~l~~L~~L~l~~n~i~~l-p-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-- 467 (693)
..+.++++|+.+ |..++.+++|++|++++|.+... | ..+..+++|+.|++++|.+....+.....
T Consensus 370 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 449 (606)
T 3t6q_A 370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP 449 (606)
T ss_dssp TTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCT
T ss_pred hhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCC
Confidence 556666655532 34566777777777777777654 2 33667777777777777665543322100
Q ss_pred --ccccccCCCCchhh-hhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcc-cCccccCCCCCCE
Q 037483 468 --FPFNLMGKSLYPVA-LMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVT-LPASISGLLNLKE 543 (693)
Q Consensus 468 --~~~~~~~~~~~~~~-~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~ 543 (693)
....+....+.... .....+..+++|+.|++++|.++ +..|..+..+++|++|+|++|+++. .|..+.++++| +
T Consensus 450 ~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~ 527 (606)
T 3t6q_A 450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS-SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-Y 527 (606)
T ss_dssp TCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-E
T ss_pred CCCEEECCCCCCCccccccchhhccCCCccEEECCCCccC-ccChhhhccccCCCEEECCCCccCcCChhHhCccccc-E
Confidence 00111111110000 01125777889999999999883 4557788889999999999999884 46788889999 9
Q ss_pred Eecccccceeec-cCcccccccCCchhhhc---chhhhHHHHHHHH
Q 037483 544 LELEDCALKLRK-SDCTIIKCIDSLKLLVN---NGLAISMLQEYLE 585 (693)
Q Consensus 544 L~L~~n~~~~~~-~~~~~l~~l~~l~~~~n---~~~~~~~~~~~~~ 585 (693)
|++++|++.... .....+.+|..+++.+| |.+...++..|+.
T Consensus 528 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~~ 573 (606)
T 3t6q_A 528 LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYK 573 (606)
T ss_dssp EECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHHH
T ss_pred EECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHHHHHHHH
Confidence 999999885333 23455667777777776 5444556666765
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.82 E-value=6.6e-20 Score=198.86 Aligned_cols=243 Identities=19% Similarity=0.237 Sum_probs=172.9
Q ss_pred cCccccccccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceee-cCCcCCCCCCCEEecCCCCCCccCCC
Q 037483 325 KNLSSLLISLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKL-PLSIELLTGLELLNLNDCKNLLRLPS 403 (693)
Q Consensus 325 ~~L~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~L~~~~~~~~lp~ 403 (693)
.+++.+|..+. +++++|++++|.+.+..+..+.++++|++|+|++|.++.+ |..+.++++|++|+|++|.+....+.
T Consensus 21 ~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 98 (477)
T 2id5_A 21 KRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG 98 (477)
T ss_dssp CCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTT
T ss_pred CCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcc
Confidence 35677776543 6899999999998887788999999999999999999977 67799999999999999987655555
Q ss_pred CCCCCcccccc-----------cccccCCCCccEEecCCCccccC-CCccccCCCCCEEEccCCCCCCCCCCccc----c
Q 037483 404 SIDGCFKLENV-----------SETLGQVEILEELDISGTTIREP-PSSIFAIKNLKKLSFSGCSGPPSSASWHL----H 467 (693)
Q Consensus 404 ~~~~~~~L~~l-----------p~~l~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~----~ 467 (693)
.+.++++|+.+ |..+.++++|++|++++|.+..+ +..+..+++|+.|++++|.+....+.... .
T Consensus 99 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 178 (477)
T 2id5_A 99 VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGL 178 (477)
T ss_dssp SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTC
T ss_pred cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCC
Confidence 67788877754 45688999999999999999977 56789999999999999987765421100 0
Q ss_pred ccccccCCCCchhhhhhcccCCCC------------------------cCCeeeCCCCCCCCCCCC-ccCCCCCCCCEEe
Q 037483 468 FPFNLMGKSLYPVALMLFSLSGLC------------------------SLSKLDLSYCGLGEGAIP-NDIGNLCSLKELY 522 (693)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~l~~l~------------------------~L~~L~ls~n~l~~~~~p-~~l~~l~~L~~L~ 522 (693)
..+.+....+.. .....+..++ +|+.|++++|.++. +| ..+..+++|++|+
T Consensus 179 ~~L~l~~n~i~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~ 254 (477)
T 2id5_A 179 IVLRLRHLNINA--IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA--VPYLAVRHLVYLRFLN 254 (477)
T ss_dssp CEEEEESCCCCE--ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS--CCHHHHTTCTTCCEEE
T ss_pred cEEeCCCCcCcE--eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc--cCHHHhcCccccCeeE
Confidence 000111100000 0001222333 56666666666632 44 3567788888888
Q ss_pred CCCCCCcccC-ccccCCCCCCEEecccccceee-ccCcccccccCCchhhhcc
Q 037483 523 LSKNNFVTLP-ASISGLLNLKELELEDCALKLR-KSDCTIIKCIDSLKLLVNN 573 (693)
Q Consensus 523 L~~n~l~~lp-~~l~~l~~L~~L~L~~n~~~~~-~~~~~~l~~l~~l~~~~n~ 573 (693)
|++|.++.++ ..+..+++|+.|+|++|++... ...+..+.+|..|++.+|.
T Consensus 255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 255 LSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp CCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred CCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence 8888888665 4577888888888888887332 3445566666666666553
No 32
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.82 E-value=1.1e-20 Score=215.15 Aligned_cols=173 Identities=16% Similarity=0.238 Sum_probs=133.2
Q ss_pred chhhhcCccccceeccCCcCcee------------------ecCCcC--CCCCCCEEecCCCCCCccCCCCCCCCccccc
Q 037483 354 FLEIVASMEDLSELYLDGTFITK------------------LPLSIE--LLTGLELLNLNDCKNLLRLPSSIDGCFKLEN 413 (693)
Q Consensus 354 ~~~~~~~l~~L~~L~L~~~~l~~------------------l~~~~~--~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~ 413 (693)
+|..++++++|++|+|++|.++. +|..++ ++++|++|+|++|.+.+.+|..+.++++|+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 67788889999999999999887 888887 8999999999999888888887777666653
Q ss_pred -------------ccccccCC-------CCccEEecCCCccccCCC--ccccCCCCCEEEccCCCCCCCCCCcccccccc
Q 037483 414 -------------VSETLGQV-------EILEELDISGTTIREPPS--SIFAIKNLKKLSFSGCSGPPSSASWHLHFPFN 471 (693)
Q Consensus 414 -------------lp~~l~~l-------~~L~~L~l~~n~i~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 471 (693)
+|..++++ ++|++|++++|.++.+|. .+.++++|+.|++++|.+... +
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~l-p--------- 589 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL-E--------- 589 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBC-C---------
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccc-h---------
Confidence 34444444 489999999999888888 888999999999998877622 2
Q ss_pred ccCCCCchhhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCC-CCEEeCCCCCCcccCccccCCCC--CCEEeccc
Q 037483 472 LMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCS-LKELYLSKNNFVTLPASISGLLN--LKELELED 548 (693)
Q Consensus 472 ~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~-L~~L~L~~n~l~~lp~~l~~l~~--L~~L~L~~ 548 (693)
.+..+++|+.|++++|.++ .+|..+..+++ |++|+|++|.++.+|..+..++. |+.|+|++
T Consensus 590 --------------~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~ 653 (876)
T 4ecn_A 590 --------------AFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSY 653 (876)
T ss_dssp --------------CCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCS
T ss_pred --------------hhcCCCcceEEECcCCccc--cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcC
Confidence 4566777777777777774 47777777777 77777777777777766655543 77777777
Q ss_pred ccce
Q 037483 549 CALK 552 (693)
Q Consensus 549 n~~~ 552 (693)
|++.
T Consensus 654 N~l~ 657 (876)
T 4ecn_A 654 NKIG 657 (876)
T ss_dssp SCTT
T ss_pred CcCC
Confidence 7663
No 33
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.82 E-value=9.2e-20 Score=182.36 Aligned_cols=199 Identities=21% Similarity=0.193 Sum_probs=112.7
Q ss_pred ccccccccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecC-CcCCCCCCCEEecCCCCCCccCCCCC
Q 037483 327 LSSLLISLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPL-SIELLTGLELLNLNDCKNLLRLPSSI 405 (693)
Q Consensus 327 L~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~L~~~~~~~~lp~~~ 405 (693)
+..+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.++.++. .+..+++|++|++++|.+.+..+..+
T Consensus 19 l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (276)
T 2z62_A 19 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 96 (276)
T ss_dssp CSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred ccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhh
Confidence 444554332 468888888877666656677788888888888888887654 57778888888888886655555544
Q ss_pred CCCcccccc----------c-ccccCCCCccEEecCCCcccc--CCCccccCCCCCEEEccCCCCCCCCCCccccccccc
Q 037483 406 DGCFKLENV----------S-ETLGQVEILEELDISGTTIRE--PPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNL 472 (693)
Q Consensus 406 ~~~~~L~~l----------p-~~l~~l~~L~~L~l~~n~i~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 472 (693)
.++++|+.+ + ..++++++|++|++++|.++. +|..+..+++|++|++++|.+....+.
T Consensus 97 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~--------- 167 (276)
T 2z62_A 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT--------- 167 (276)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG---------
T ss_pred cCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH---------
Confidence 444333321 1 134455555555555555554 345555555555555555544332111
Q ss_pred cCCCCchhhhhhcccCCCCcCC----eeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCcc-ccCCCCCCEEecc
Q 037483 473 MGKSLYPVALMLFSLSGLCSLS----KLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPAS-ISGLLNLKELELE 547 (693)
Q Consensus 473 ~~~~~~~~~~~~~~l~~l~~L~----~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~ 547 (693)
.+..+++|+ .|++++|.++. ++.......+|++|++++|.++.+|.. +..+++|+.|+++
T Consensus 168 -------------~~~~l~~L~~l~l~L~ls~n~l~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 232 (276)
T 2z62_A 168 -------------DLRVLHQMPLLNLSLDLSLNPMNF--IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 232 (276)
T ss_dssp -------------GGHHHHTCTTCCEEEECCSSCCCE--ECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECC
T ss_pred -------------HhhhhhhccccceeeecCCCcccc--cCccccCCCcccEEECCCCceeecCHhHhcccccccEEEcc
Confidence 122222232 55555555522 333333334556666666655555532 3555566666666
Q ss_pred cccc
Q 037483 548 DCAL 551 (693)
Q Consensus 548 ~n~~ 551 (693)
+|++
T Consensus 233 ~N~~ 236 (276)
T 2z62_A 233 TNPW 236 (276)
T ss_dssp SSCB
T ss_pred CCcc
Confidence 6554
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.82 E-value=6.2e-20 Score=193.50 Aligned_cols=234 Identities=18% Similarity=0.125 Sum_probs=120.9
Q ss_pred ccccccc-cCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecC-CcCCCCCCCEEecCCCCCCccCCCC
Q 037483 327 LSSLLIS-LSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPL-SIELLTGLELLNLNDCKNLLRLPSS 404 (693)
Q Consensus 327 L~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~L~~~~~~~~lp~~ 404 (693)
++.+|.. +..+++|++|++++|.+....+..+..+++|++|++++|.++.+++ .+..+++|++|++++|.+. .+|..
T Consensus 57 l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~ 135 (390)
T 3o6n_A 57 MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRG 135 (390)
T ss_dssp ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTT
T ss_pred hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHH
Confidence 4455543 5678888888888887766666678888888888888888887654 4688888888888888654 34433
Q ss_pred -CCCCcccccc-----------cccccCCCCccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCCccccccccc
Q 037483 405 -IDGCFKLENV-----------SETLGQVEILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNL 472 (693)
Q Consensus 405 -~~~~~~L~~l-----------p~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 472 (693)
+.++++|+.+ |..++++++|++|++++|.++.++ +..+++|+.|++++|.+........ .....+
T Consensus 136 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~-L~~L~l 212 (390)
T 3o6n_A 136 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIA-VEELDA 212 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEEECCSS-CSEEEC
T ss_pred HhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccccCCCCc-ceEEEC
Confidence 3444444322 233455555555555555555442 3344444444444443332110000 000000
Q ss_pred cCCCCchhhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCccc-CccccCCCCCCEEecccccc
Q 037483 473 MGKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTL-PASISGLLNLKELELEDCAL 551 (693)
Q Consensus 473 ~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~~ 551 (693)
....+.. . .....++|+.|++++|.++. . ..+..+++|++|++++|.++.+ |..+..+++|++|++++|++
T Consensus 213 ~~n~l~~---~--~~~~~~~L~~L~l~~n~l~~--~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (390)
T 3o6n_A 213 SHNSINV---V--RGPVNVELTILKLQHNNLTD--T-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284 (390)
T ss_dssp CSSCCCE---E--ECCCCSSCCEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCC
T ss_pred CCCeeee---c--cccccccccEEECCCCCCcc--c-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcC
Confidence 0000000 0 01122455555555555532 1 3444555555555555555533 44455555555555555555
Q ss_pred eeeccCcccccccCCchhhhc
Q 037483 552 KLRKSDCTIIKCIDSLKLLVN 572 (693)
Q Consensus 552 ~~~~~~~~~l~~l~~l~~~~n 572 (693)
.........+++|..|++..|
T Consensus 285 ~~~~~~~~~l~~L~~L~L~~n 305 (390)
T 3o6n_A 285 VALNLYGQPIPTLKVLDLSHN 305 (390)
T ss_dssp CEEECSSSCCTTCCEEECCSS
T ss_pred cccCcccCCCCCCCEEECCCC
Confidence 332222233344444444333
No 35
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.82 E-value=4.4e-20 Score=206.74 Aligned_cols=232 Identities=19% Similarity=0.180 Sum_probs=172.1
Q ss_pred cccCcCcccccc--ccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCcCCCCC-CCEEecCCCCC
Q 037483 321 LKGCKNLSSLLI--SLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSIELLTG-LELLNLNDCKN 397 (693)
Q Consensus 321 l~~~~~L~~l~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~-L~~L~L~~~~~ 397 (693)
+.++ +++.+|. .+.++++|++|++++|.+.+.+| .+..+++|++|++++|.++.+|..+..+++ |++|++++|.+
T Consensus 312 L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l 389 (636)
T 4eco_A 312 IGYN-NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL 389 (636)
T ss_dssp CCSS-CCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCC
T ss_pred CCCC-cCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcC
Confidence 4443 4557777 78999999999999998887888 889999999999999999999999999999 99999999987
Q ss_pred CccCCCCCCCCc--cccc-----------cccccc-------CCCCccEEecCCCccccCCCccc-cCCCCCEEEccCCC
Q 037483 398 LLRLPSSIDGCF--KLEN-----------VSETLG-------QVEILEELDISGTTIREPPSSIF-AIKNLKKLSFSGCS 456 (693)
Q Consensus 398 ~~~lp~~~~~~~--~L~~-----------lp~~l~-------~l~~L~~L~l~~n~i~~lp~~~~-~l~~L~~L~l~~~~ 456 (693)
. .+|..+..+. +|+. +|..+. .+++|++|++++|.++.+|..+. .+++|++|++++|.
T Consensus 390 ~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~ 468 (636)
T 4eco_A 390 K-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM 468 (636)
T ss_dssp S-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC
T ss_pred c-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCC
Confidence 7 7888765543 4443 345566 77799999999999998887654 58999999999998
Q ss_pred CCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCC--CCCCCCEEeCCCCCCcccCcc
Q 037483 457 GPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIG--NLCSLKELYLSKNNFVTLPAS 534 (693)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~--~l~~L~~L~L~~n~l~~lp~~ 534 (693)
+......... .....+.++++|+.|++++|.++ .+|..+. .+++|++|+|++|.++.+|..
T Consensus 469 l~~i~~~~~~---------------~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~ 531 (636)
T 4eco_A 469 LTEIPKNSLK---------------DENENFKNTYLLTSIDLRFNKLT--KLSDDFRATTLPYLVGIDLSYNSFSKFPTQ 531 (636)
T ss_dssp CSBCCSSSSE---------------ETTEECTTGGGCCEEECCSSCCC--BCCGGGSTTTCTTCCEEECCSSCCSSCCCG
T ss_pred CCCcCHHHhc---------------cccccccccCCccEEECcCCcCC--ccChhhhhccCCCcCEEECCCCCCCCcChh
Confidence 8743321100 00002344558888888888884 4777776 888888888888888888888
Q ss_pred ccCCCCCCEEeccccc------c-eeeccCcccccccCCchhhhc
Q 037483 535 ISGLLNLKELELEDCA------L-KLRKSDCTIIKCIDSLKLLVN 572 (693)
Q Consensus 535 l~~l~~L~~L~L~~n~------~-~~~~~~~~~l~~l~~l~~~~n 572 (693)
+..+++|+.|+|++|+ + ...+.....+++|..|++.+|
T Consensus 532 ~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 576 (636)
T 4eco_A 532 PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN 576 (636)
T ss_dssp GGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred hhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC
Confidence 8888888888885543 3 222233444555555555554
No 36
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=3.8e-19 Score=182.88 Aligned_cols=205 Identities=21% Similarity=0.217 Sum_probs=139.5
Q ss_pred CccccccccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceee-cCCcCCCCCCCEEecCCCCCCccCCCC
Q 037483 326 NLSSLLISLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKL-PLSIELLTGLELLNLNDCKNLLRLPSS 404 (693)
Q Consensus 326 ~L~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~L~~~~~~~~lp~~ 404 (693)
.++.+|..+ .++|++|++++|.+.+..+..+.++++|++|++++|.++.+ |..+..+++|++|++++|.+. .+|.
T Consensus 42 ~l~~lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~- 117 (330)
T 1xku_A 42 GLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPE- 117 (330)
T ss_dssp CCCSCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCS-
T ss_pred CccccCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccCh-
Confidence 355555444 36899999999987776666889999999999999999977 778899999999999998543 3443
Q ss_pred CCCCcccccccccccCCCCccEEecCCCccccCCC-ccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhh
Q 037483 405 IDGCFKLENVSETLGQVEILEELDISGTTIREPPS-SIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALM 483 (693)
Q Consensus 405 ~~~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (693)
.+. ++|++|++++|.++.++. .+..+++|++|++++|.+..... .
T Consensus 118 ------------~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------------------~ 163 (330)
T 1xku_A 118 ------------KMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI--------------------E 163 (330)
T ss_dssp ------------SCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGB--------------------C
T ss_pred ------------hhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCc--------------------C
Confidence 222 689999999999998854 57899999999999998753110 0
Q ss_pred hcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCccc-CccccCCCCCCEEecccccceeec-cCcccc
Q 037483 484 LFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTL-PASISGLLNLKELELEDCALKLRK-SDCTII 561 (693)
Q Consensus 484 ~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~~~~~~-~~~~~l 561 (693)
+..+.++++|+.|++++|.++. +|..+. ++|++|++++|.++.+ |..+..+++|++|++++|.+.... ..+..+
T Consensus 164 ~~~~~~l~~L~~L~l~~n~l~~--l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 239 (330)
T 1xku_A 164 NGAFQGMKKLSYIRIADTNITT--IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT 239 (330)
T ss_dssp TTGGGGCTTCCEEECCSSCCCS--CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred hhhccCCCCcCEEECCCCcccc--CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCC
Confidence 0145556666666666666632 554432 5666666666666644 345566666666666666653222 233444
Q ss_pred cccCCchhhhc
Q 037483 562 KCIDSLKLLVN 572 (693)
Q Consensus 562 ~~l~~l~~~~n 572 (693)
.+|..|++..|
T Consensus 240 ~~L~~L~L~~N 250 (330)
T 1xku_A 240 PHLRELHLNNN 250 (330)
T ss_dssp TTCCEEECCSS
T ss_pred CCCCEEECCCC
Confidence 44555544444
No 37
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.81 E-value=6.7e-19 Score=193.22 Aligned_cols=71 Identities=20% Similarity=0.215 Sum_probs=50.1
Q ss_pred CCCCEEeCCCCCCcccCccccCCCCCCEEecccccceeeccC-cccccccCCchhhhcch---hhhHHH-HHHHHH
Q 037483 516 CSLKELYLSKNNFVTLPASISGLLNLKELELEDCALKLRKSD-CTIIKCIDSLKLLVNNG---LAISML-QEYLEA 586 (693)
Q Consensus 516 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~~~-~~~l~~l~~l~~~~n~~---~~~~~~-~~~~~~ 586 (693)
++|++|++++|+++.+|..+..+++|++|++++|++...... ...+.+|..+++.+|.. +...++ ..|+..
T Consensus 421 ~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~ 496 (520)
T 2z7x_B 421 PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 496 (520)
T ss_dssp TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHH
T ss_pred ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCchHHHHHHHHh
Confidence 577888888888888888788899999999999988533333 56667777777777643 333444 556643
No 38
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.81 E-value=5.3e-19 Score=177.59 Aligned_cols=212 Identities=21% Similarity=0.196 Sum_probs=172.1
Q ss_pred cCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceee-cCCcCCCCCCCEEecCCCCCCccCCCCCCCCcccc
Q 037483 334 LSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKL-PLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLE 412 (693)
Q Consensus 334 l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~ 412 (693)
+.++++++.++++++.+ ..+|..+. +++++|+|++|.++.+ +..+..+++|++|++++|.+.+
T Consensus 6 ~~~l~~l~~l~~~~~~l-~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------- 69 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNL-TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK------------- 69 (290)
T ss_dssp EECSTTCCEEECTTSCC-SSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-------------
T ss_pred ccccCCccEEECCCCCC-CcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-------------
Confidence 56788999999999765 45565443 6899999999999976 4568999999999999985432
Q ss_pred cccccccCCCCccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCc
Q 037483 413 NVSETLGQVEILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCS 492 (693)
Q Consensus 413 ~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 492 (693)
++.. +.+++|++|++++|.++.+|..+..+++|++|++++|.+....+. .+.++++
T Consensus 70 -~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~----------------------~~~~l~~ 125 (290)
T 1p9a_G 70 -LQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG----------------------ALRGLGE 125 (290)
T ss_dssp -EECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSS----------------------TTTTCTT
T ss_pred -ccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHH----------------------HHcCCCC
Confidence 2222 678899999999999999999999999999999999988766443 6888999
Q ss_pred CCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCcc-ccCCCCCCEEecccccceeeccCcccccccCCchhhh
Q 037483 493 LSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPAS-ISGLLNLKELELEDCALKLRKSDCTIIKCIDSLKLLV 571 (693)
Q Consensus 493 L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n~~~~~~~~~~~l~~l~~l~~~~ 571 (693)
|+.|++++|.++ +..+..+..+++|+.|+|++|+++.+|.. +..+++|+.|+|++|++............|..+.+.+
T Consensus 126 L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 126 LQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHG 204 (290)
T ss_dssp CCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCS
T ss_pred CCEEECCCCCCC-ccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCC
Confidence 999999999994 33445578999999999999999999864 5789999999999999965555555566777777766
Q ss_pred c---chhhhHHHHHHHHH
Q 037483 572 N---NGLAISMLQEYLEA 586 (693)
Q Consensus 572 n---~~~~~~~~~~~~~~ 586 (693)
| |.+...++..|++.
T Consensus 205 Np~~C~c~~~~l~~wl~~ 222 (290)
T 1p9a_G 205 NPWLCNCEILYFRRWLQD 222 (290)
T ss_dssp CCBCCSGGGHHHHHHHHH
T ss_pred CCccCcCccHHHHHHHHh
Confidence 6 55555667777764
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=1.4e-19 Score=201.56 Aligned_cols=240 Identities=20% Similarity=0.169 Sum_probs=139.2
Q ss_pred ccccccc-cCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCC-cCCCCCCCEEecCCCCCCccCCCC
Q 037483 327 LSSLLIS-LSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLS-IELLTGLELLNLNDCKNLLRLPSS 404 (693)
Q Consensus 327 L~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~L~~~~~~~~lp~~ 404 (693)
+..+|.. +.++++|++|++++|.+.+..+..+..+++|++|+|++|.++.+++. ++.+++|++|+|++|.+....+..
T Consensus 63 l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~ 142 (597)
T 3oja_B 63 MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI 142 (597)
T ss_dssp ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHH
Confidence 3444443 56788899999998887776677888888999999998888877654 588889999999888655333333
Q ss_pred CCCCcccccc-----------cccccCCCCccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCCcc---cc---
Q 037483 405 IDGCFKLENV-----------SETLGQVEILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSASWH---LH--- 467 (693)
Q Consensus 405 ~~~~~~L~~l-----------p~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~---~~--- 467 (693)
+.++++|+.+ |..++++++|++|++++|.++.++ +..+++|+.|++++|.+........ ..
T Consensus 143 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~ 220 (597)
T 3oja_B 143 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASH 220 (597)
T ss_dssp TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCS
T ss_pred hccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccccccCCchhheeeccC
Confidence 4445444422 234555666666666666655543 3344455555444443332110000 00
Q ss_pred --------------ccccccCCCCchhhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCc
Q 037483 468 --------------FPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPA 533 (693)
Q Consensus 468 --------------~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~ 533 (693)
..+.+....+.. +..+..+++|+.|++++|.+ .+..|..++.+++|+.|+|++|.++.+|.
T Consensus 221 n~l~~~~~~~~~~L~~L~L~~n~l~~----~~~l~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~ 295 (597)
T 3oja_B 221 NSINVVRGPVNVELTILKLQHNNLTD----TAWLLNYPGLVEVDLSYNEL-EKIMYHPFVKMQRLERLYISNNRLVALNL 295 (597)
T ss_dssp SCCCEEECSCCSCCCEEECCSSCCCC----CGGGGGCTTCSEEECCSSCC-CEEESGGGTTCSSCCEEECTTSCCCEEEC
T ss_pred CcccccccccCCCCCEEECCCCCCCC----ChhhccCCCCCEEECCCCcc-CCCCHHHhcCccCCCEEECCCCCCCCCCc
Confidence 000000000000 12455566677777777766 34445666667777777777777766666
Q ss_pred cccCCCCCCEEecccccceeeccCcccccccCCchhhhcc
Q 037483 534 SISGLLNLKELELEDCALKLRKSDCTIIKCIDSLKLLVNN 573 (693)
Q Consensus 534 ~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~l~~l~~~~n~ 573 (693)
.+..+++|+.|+|++|.+...+.....+.+|..|++.+|.
T Consensus 296 ~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 296 YGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp SSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC
T ss_pred ccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCC
Confidence 6666667777777777664333334445555555555543
No 40
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.81 E-value=2.2e-19 Score=201.04 Aligned_cols=204 Identities=21% Similarity=0.142 Sum_probs=133.3
Q ss_pred cCCCCCCcEEEcCCCCCccc--chhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCccc
Q 037483 334 LSSLKCLRTLELSGCSKLKR--FLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKL 411 (693)
Q Consensus 334 l~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L 411 (693)
+..+++|++|++++|.+.+. .+..+..+++|++|++++|.++.+|..+..+++|++|++++|.+.+..|.
T Consensus 346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------- 417 (606)
T 3vq2_A 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEF-------- 417 (606)
T ss_dssp CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTT--------
T ss_pred hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccCh--------
Confidence 33455555555555543332 24445555555555555555555555555555555555555544333321
Q ss_pred ccccccccCCCCccEEecCCCccccC-CCccccCCCCCEEEccCCCCCCC-CCCccccccccccCCCCchhhhhhcccCC
Q 037483 412 ENVSETLGQVEILEELDISGTTIREP-PSSIFAIKNLKKLSFSGCSGPPS-SASWHLHFPFNLMGKSLYPVALMLFSLSG 489 (693)
Q Consensus 412 ~~lp~~l~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 489 (693)
..+.++++|++|++++|.+... |..+..+++|++|++++|.+... .+ ..+..
T Consensus 418 ----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------------------~~~~~ 471 (606)
T 3vq2_A 418 ----SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS----------------------NVFAN 471 (606)
T ss_dssp ----TTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC----------------------SCCTT
T ss_pred ----hhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchH----------------------Hhhcc
Confidence 3466778888888888888764 66778888888888888865531 11 15777
Q ss_pred CCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCccc-CccccCCCCCCEEecccccceeeccCccccc-ccCCc
Q 037483 490 LCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTL-PASISGLLNLKELELEDCALKLRKSDCTIIK-CIDSL 567 (693)
Q Consensus 490 l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~-~l~~l 567 (693)
+++|+.|++++|.+ .+..|..+..+++|++|++++|+++.+ |..+..+++|++|++++|++.........+. +|..+
T Consensus 472 l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l 550 (606)
T 3vq2_A 472 TTNLTFLDLSKCQL-EQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFF 550 (606)
T ss_dssp CTTCCEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEE
T ss_pred CCCCCEEECCCCcC-CccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEE
Confidence 88888888888888 345567788888888888888888855 6778888888888888888854443344443 46666
Q ss_pred hhhhc
Q 037483 568 KLLVN 572 (693)
Q Consensus 568 ~~~~n 572 (693)
++.+|
T Consensus 551 ~l~~N 555 (606)
T 3vq2_A 551 NLTNN 555 (606)
T ss_dssp ECCSC
T ss_pred EccCC
Confidence 66665
No 41
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.81 E-value=5e-20 Score=187.62 Aligned_cols=201 Identities=20% Similarity=0.164 Sum_probs=97.5
Q ss_pred CCCCCcEEEcCCCCCcccchhhh--cCccccceeccCCcCceeecCCcCCC-----CCCCEEecCCCCCCccCCCCCCCC
Q 037483 336 SLKCLRTLELSGCSKLKRFLEIV--ASMEDLSELYLDGTFITKLPLSIELL-----TGLELLNLNDCKNLLRLPSSIDGC 408 (693)
Q Consensus 336 ~l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~L~~~~l~~l~~~~~~l-----~~L~~L~L~~~~~~~~lp~~~~~~ 408 (693)
++++|++|++++|.+.+..|..+ ..+++|++|+|++|.++.+|..+..+ ++|++|++++|.+.+..|..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~---- 168 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ---- 168 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTT----
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHH----
Confidence 45666666666666555555543 56666666666666666555544444 66666666666544333332
Q ss_pred cccccccccccCCCCccEEecCCCcccc---CCCcc--ccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhh
Q 037483 409 FKLENVSETLGQVEILEELDISGTTIRE---PPSSI--FAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALM 483 (693)
Q Consensus 409 ~~L~~lp~~l~~l~~L~~L~l~~n~i~~---lp~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (693)
++++++|++|++++|.+.+ +|..+ ..+++|++|++++|.+..... ..
T Consensus 169 ---------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------------------~~ 220 (312)
T 1wwl_A 169 ---------VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG-------------------VC 220 (312)
T ss_dssp ---------CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHH-------------------HH
T ss_pred ---------hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHH-------------------HH
Confidence 3444555555555555432 12222 445555555555554331100 00
Q ss_pred hcccCCCCcCCeeeCCCCCCCCCCCC-ccCCCCCCCCEEeCCCCCCcccCccccCCCCCCEEecccccceeeccCccccc
Q 037483 484 LFSLSGLCSLSKLDLSYCGLGEGAIP-NDIGNLCSLKELYLSKNNFVTLPASISGLLNLKELELEDCALKLRKSDCTIIK 562 (693)
Q Consensus 484 ~~~l~~l~~L~~L~ls~n~l~~~~~p-~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~ 562 (693)
...+.++++|+.|++++|.++. ..| ..+..+++|++|+|++|.++.+|..+. ++|++|++++|+++... ....++
T Consensus 221 ~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p-~~~~l~ 296 (312)
T 1wwl_A 221 SALAAARVQLQGLDLSHNSLRD-AAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNP-SPDELP 296 (312)
T ss_dssp HHHHHTTCCCSEEECTTSCCCS-SCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCC-CTTTSC
T ss_pred HHHHhcCCCCCEEECCCCcCCc-ccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCCh-hHhhCC
Confidence 0022344555555555555522 121 233344555555555555555554443 45555555555553221 133444
Q ss_pred ccCCchhhhc
Q 037483 563 CIDSLKLLVN 572 (693)
Q Consensus 563 ~l~~l~~~~n 572 (693)
+|..+++.+|
T Consensus 297 ~L~~L~L~~N 306 (312)
T 1wwl_A 297 QVGNLSLKGN 306 (312)
T ss_dssp EEEEEECTTC
T ss_pred CCCEEeccCC
Confidence 4444444443
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=7.9e-19 Score=180.65 Aligned_cols=224 Identities=20% Similarity=0.187 Sum_probs=161.6
Q ss_pred CccccccccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceee-cCCcCCCCCCCEEecCCCCCCccCCCC
Q 037483 326 NLSSLLISLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKL-PLSIELLTGLELLNLNDCKNLLRLPSS 404 (693)
Q Consensus 326 ~L~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~L~~~~~~~~lp~~ 404 (693)
.++.+|..+ .++|++|++++|.+.+..+..+.++++|++|++++|.++.+ |..+..+++|++|++++|.+. .+|
T Consensus 44 ~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~-- 118 (332)
T 2ft3_A 44 GLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIP-- 118 (332)
T ss_dssp CCSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCC--
T ss_pred CccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccC--
Confidence 455666544 36899999999887776677899999999999999999977 667899999999999998543 333
Q ss_pred CCCCcccccccccccCCCCccEEecCCCccccCCC-ccccCCCCCEEEccCCCCCC--CCCCccccc---cccccCCCCc
Q 037483 405 IDGCFKLENVSETLGQVEILEELDISGTTIREPPS-SIFAIKNLKKLSFSGCSGPP--SSASWHLHF---PFNLMGKSLY 478 (693)
Q Consensus 405 ~~~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~---~~~~~~~~~~ 478 (693)
..+. ++|++|++++|.++.+|. .+..+++|++|++++|.+.. ..+...... ...+....+.
T Consensus 119 -----------~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 119 -----------PNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT 185 (332)
T ss_dssp -----------SSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCS
T ss_pred -----------cccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCC
Confidence 3333 789999999999999865 48899999999999998753 222111000 0111111111
Q ss_pred hhhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccC-ccccCCCCCCEEecccccceeeccC
Q 037483 479 PVALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLP-ASISGLLNLKELELEDCALKLRKSD 557 (693)
Q Consensus 479 ~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~n~~~~~~~~ 557 (693)
..+..+ .++|+.|++++|.++ +..+..+..+++|++|++++|.++.++ ..+..+++|++|++++|++...+..
T Consensus 186 ---~l~~~~--~~~L~~L~l~~n~i~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~ 259 (332)
T 2ft3_A 186 ---GIPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG 259 (332)
T ss_dssp ---SCCSSS--CSSCSCCBCCSSCCC-CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTT
T ss_pred ---ccCccc--cCCCCEEECCCCcCC-ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChh
Confidence 111111 268899999999884 444577888999999999999998776 4788899999999999988644444
Q ss_pred cccccccCCchhhhcc
Q 037483 558 CTIIKCIDSLKLLVNN 573 (693)
Q Consensus 558 ~~~l~~l~~l~~~~n~ 573 (693)
...+++|..+++..|.
T Consensus 260 l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 260 LPDLKLLQVVYLHTNN 275 (332)
T ss_dssp GGGCTTCCEEECCSSC
T ss_pred hhcCccCCEEECCCCC
Confidence 5566666666666553
No 43
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.81 E-value=4.1e-19 Score=198.89 Aligned_cols=223 Identities=19% Similarity=0.209 Sum_probs=156.7
Q ss_pred cccccc-ccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceee-cCCcCCCCCCCEEecCCCCCCccCCCC
Q 037483 327 LSSLLI-SLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKL-PLSIELLTGLELLNLNDCKNLLRLPSS 404 (693)
Q Consensus 327 L~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~L~~~~~~~~lp~~ 404 (693)
+..++. .+.++++|++|++++|.+. .+|..+..+++|++|++++|.++.+ |..+..+++|++|++++|...+.+|..
T Consensus 266 l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 344 (606)
T 3t6q_A 266 FFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344 (606)
T ss_dssp CSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSS
T ss_pred cCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchh
Confidence 344443 4889999999999998754 7888899999999999999999976 557899999999999999988787765
Q ss_pred -CCCCcccccc-------------cccccCCCCccEEecCCCccccC-CCccccCCCCCEEEccCCCCCCCCCCcccccc
Q 037483 405 -IDGCFKLENV-------------SETLGQVEILEELDISGTTIREP-PSSIFAIKNLKKLSFSGCSGPPSSASWHLHFP 469 (693)
Q Consensus 405 -~~~~~~L~~l-------------p~~l~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 469 (693)
+.++++|+.+ +..++.+++|++|++++|.+..+ |..+..+++|++|++++|.+....+..
T Consensus 345 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----- 419 (606)
T 3t6q_A 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS----- 419 (606)
T ss_dssp TTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC-----
T ss_pred hhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch-----
Confidence 7777777643 45688999999999999999876 678889999999999999876553321
Q ss_pred ccccCCCCchhhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcc--cC--ccccCCCCCCEEe
Q 037483 470 FNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVT--LP--ASISGLLNLKELE 545 (693)
Q Consensus 470 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~--lp--~~l~~l~~L~~L~ 545 (693)
.+..+++|+.|++++|.+ .+..|..++.+++|++|++++|.++. +| ..+..+++|++|+
T Consensus 420 ----------------~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~ 482 (606)
T 3t6q_A 420 ----------------PFQNLHLLKVLNLSHSLL-DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV 482 (606)
T ss_dssp ----------------TTTTCTTCCEEECTTCCC-BTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEE
T ss_pred ----------------hhhCcccCCEEECCCCcc-CCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEE
Confidence 244555555566655555 23344455555555555555555542 12 3455555555555
Q ss_pred cccccceee-ccCcccccccCCchhhhc
Q 037483 546 LEDCALKLR-KSDCTIIKCIDSLKLLVN 572 (693)
Q Consensus 546 L~~n~~~~~-~~~~~~l~~l~~l~~~~n 572 (693)
+++|++... ...+..+++|..|++.+|
T Consensus 483 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 483 LSFCDLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCCCccCccChhhhccccCCCEEECCCC
Confidence 555555322 233344444444444444
No 44
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.80 E-value=1.3e-19 Score=177.04 Aligned_cols=204 Identities=17% Similarity=0.254 Sum_probs=159.3
Q ss_pred cCcCccccccccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcC-ceeecC-CcCCCCCCCEEecCC-CCCCc
Q 037483 323 GCKNLSSLLISLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTF-ITKLPL-SIELLTGLELLNLND-CKNLL 399 (693)
Q Consensus 323 ~~~~L~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~l~~-~~~~l~~L~~L~L~~-~~~~~ 399 (693)
.|.+++.+|. +. ++|++|++++|.+.+..+..+.++++|++|++++|. ++.++. .+..+++|++|++++ |.+.
T Consensus 19 ~c~~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~- 94 (239)
T 2xwt_C 19 TCKDIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT- 94 (239)
T ss_dssp EECSCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-
T ss_pred EccCccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-
Confidence 3666888876 33 489999999998777666789999999999999997 998876 578999999999998 6432
Q ss_pred cCCCCCCCCcccccccccccCCCCccEEecCCCccccCCCccccCCCCC---EEEccCC-CCCCCCCCccccccccccCC
Q 037483 400 RLPSSIDGCFKLENVSETLGQVEILEELDISGTTIREPPSSIFAIKNLK---KLSFSGC-SGPPSSASWHLHFPFNLMGK 475 (693)
Q Consensus 400 ~lp~~~~~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~~~~~~~ 475 (693)
.+|. ..+.++++|++|++++|.++.+|. +..+++|+ +|++++| .+....+.
T Consensus 95 ~i~~------------~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~------------ 149 (239)
T 2xwt_C 95 YIDP------------DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVN------------ 149 (239)
T ss_dssp EECT------------TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTT------------
T ss_pred EcCH------------HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcc------------
Confidence 2221 346788999999999999999987 88888888 9999999 66544322
Q ss_pred CCchhhhhhcccCCCCcCC-eeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCC-CcccC-ccccCC-CCCCEEecccccc
Q 037483 476 SLYPVALMLFSLSGLCSLS-KLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNN-FVTLP-ASISGL-LNLKELELEDCAL 551 (693)
Q Consensus 476 ~~~~~~~~~~~l~~l~~L~-~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~-l~~lp-~~l~~l-~~L~~L~L~~n~~ 551 (693)
.+.++++|+ .|++++|.++ .+|......++|++|++++|. ++.+| ..+..+ ++|+.|++++|++
T Consensus 150 ----------~~~~l~~L~~~L~l~~n~l~--~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l 217 (239)
T 2xwt_C 150 ----------AFQGLCNETLTLKLYNNGFT--SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV 217 (239)
T ss_dssp ----------TTTTTBSSEEEEECCSCCCC--EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC
T ss_pred ----------cccchhcceeEEEcCCCCCc--ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc
Confidence 578889999 9999999994 477654444899999999994 99886 567888 9999999999998
Q ss_pred eeeccCcccccccCCchh
Q 037483 552 KLRKSDCTIIKCIDSLKL 569 (693)
Q Consensus 552 ~~~~~~~~~l~~l~~l~~ 569 (693)
...... .+..|..|.+
T Consensus 218 ~~l~~~--~~~~L~~L~l 233 (239)
T 2xwt_C 218 TALPSK--GLEHLKELIA 233 (239)
T ss_dssp CCCCCT--TCTTCSEEEC
T ss_pred ccCChh--HhccCceeec
Confidence 533222 3445554443
No 45
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.80 E-value=5.6e-19 Score=183.12 Aligned_cols=207 Identities=20% Similarity=0.230 Sum_probs=119.2
Q ss_pred cCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCccccc
Q 037483 334 LSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLEN 413 (693)
Q Consensus 334 l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~ 413 (693)
+..+++|++|++++|.....++. +..+++|++|++++|.+..++. +..+++|++|++++|.+... +. +..+++|+.
T Consensus 128 ~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~ 203 (347)
T 4fmz_A 128 LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHY 203 (347)
T ss_dssp GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCE
T ss_pred hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccc-cc-ccCCCccce
Confidence 44455555555555544443332 4555555666665555554443 55556666666666543322 11 222333322
Q ss_pred cc---------ccccCCCCccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhh
Q 037483 414 VS---------ETLGQVEILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALML 484 (693)
Q Consensus 414 lp---------~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (693)
+. ..+..+++|++|++++|.++.++. +..+++|++|++++|.+...
T Consensus 204 L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~------------------------ 258 (347)
T 4fmz_A 204 FTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI------------------------ 258 (347)
T ss_dssp EECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC------------------------
T ss_pred eecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC------------------------
Confidence 10 114455555555555555555543 55555555555555544332
Q ss_pred cccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCccc-CccccCCCCCCEEecccccceeeccCcccccc
Q 037483 485 FSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTL-PASISGLLNLKELELEDCALKLRKSDCTIIKC 563 (693)
Q Consensus 485 ~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~ 563 (693)
..+..+++|+.|++++|.++. + ..+..+++|++|++++|.++.. |..+..+++|++|++++|++..... ...++.
T Consensus 259 ~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~ 334 (347)
T 4fmz_A 259 NAVKDLTKLKMLNVGSNQISD--I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSK 334 (347)
T ss_dssp GGGTTCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTT
T ss_pred hhHhcCCCcCEEEccCCccCC--C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhc
Confidence 156777888888888888844 4 3577788888888888888744 4667888888888888888753333 455556
Q ss_pred cCCchhhhcc
Q 037483 564 IDSLKLLVNN 573 (693)
Q Consensus 564 l~~l~~~~n~ 573 (693)
|..+++.+|.
T Consensus 335 L~~L~l~~N~ 344 (347)
T 4fmz_A 335 MDSADFANQV 344 (347)
T ss_dssp CSEESSSCC-
T ss_pred cceeehhhhc
Confidence 6666655553
No 46
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=3.3e-20 Score=192.76 Aligned_cols=222 Identities=18% Similarity=0.187 Sum_probs=124.1
Q ss_pred cccccc-ccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCC-cCCCCCCCEEecCCCCCCccCCC-
Q 037483 327 LSSLLI-SLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLS-IELLTGLELLNLNDCKNLLRLPS- 403 (693)
Q Consensus 327 L~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~L~~~~~~~~lp~- 403 (693)
++.++. .+.++++|++|++++|.+.+..+..+.++++|++|++++|.++.++.. +..+++|++|++++|.+. .+|.
T Consensus 64 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~ 142 (353)
T 2z80_A 64 ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGET 142 (353)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSS
T ss_pred CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCch
Confidence 444444 567777777777777766665566677777777777777777766654 567777777777777544 3333
Q ss_pred -CCCCCcccccc------------cccccCCCCccEEecCCCccccC-CCccccCCCCCEEEccCCCCCCCCCCcccccc
Q 037483 404 -SIDGCFKLENV------------SETLGQVEILEELDISGTTIREP-PSSIFAIKNLKKLSFSGCSGPPSSASWHLHFP 469 (693)
Q Consensus 404 -~~~~~~~L~~l------------p~~l~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 469 (693)
.+.++++|+.+ +..++++++|++|++++|.++++ |..+..+++|++|++++|.+.....
T Consensus 143 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~------- 215 (353)
T 2z80_A 143 SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLE------- 215 (353)
T ss_dssp CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHH-------
T ss_pred hhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchh-------
Confidence 44444444322 23455666667777766666655 5566666666777766665432110
Q ss_pred ccccCCCCchhhhhhcccCCCCcCCeeeCCCCCCCCCCCCccC---CCCCCCCEEeCCCCCCc-----ccCccccCCCCC
Q 037483 470 FNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDI---GNLCSLKELYLSKNNFV-----TLPASISGLLNL 541 (693)
Q Consensus 470 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l---~~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L 541 (693)
..+..+++|+.|++++|.++. ..+..+ ...+.++.++++++.++ .+|+.+..+++|
T Consensus 216 ---------------~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L 279 (353)
T 2z80_A 216 ---------------IFVDVTSSVECLELRDTDLDT-FHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGL 279 (353)
T ss_dssp ---------------HHHHHTTTEEEEEEESCBCTT-CCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTC
T ss_pred ---------------hhhhhcccccEEECCCCcccc-ccccccccccccchhhccccccccccCcchhhhHHHHhcccCC
Confidence 123446778888888887743 111111 12334444444444443 244445555555
Q ss_pred CEEecccccceeeccC-cccccccCCchhhhc
Q 037483 542 KELELEDCALKLRKSD-CTIIKCIDSLKLLVN 572 (693)
Q Consensus 542 ~~L~L~~n~~~~~~~~-~~~l~~l~~l~~~~n 572 (693)
+.|++++|++...... +..+++|..+++.+|
T Consensus 280 ~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 280 LELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311 (353)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCCCCccCHHHHhcCCCCCEEEeeCC
Confidence 5555555555322222 234444444444444
No 47
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.80 E-value=2.4e-18 Score=171.36 Aligned_cols=207 Identities=25% Similarity=0.323 Sum_probs=162.3
Q ss_pred CCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecC-CcCCCCCCCEEecCCCCCCccCCCCCCCCccccccccc
Q 037483 339 CLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPL-SIELLTGLELLNLNDCKNLLRLPSSIDGCFKLENVSET 417 (693)
Q Consensus 339 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~lp~~ 417 (693)
+.++++++++.+. .+|..+. ++|++|++++|.++.++. .+..+++|++|++++|.+. .+|. ..
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~------------~~ 80 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPA------------GI 80 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCT------------TT
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeCh------------hh
Confidence 5788999987644 5665443 689999999999998875 6899999999999998543 2222 22
Q ss_pred ccCCCCccEEecCCCccccCCC-ccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCee
Q 037483 418 LGQVEILEELDISGTTIREPPS-SIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKL 496 (693)
Q Consensus 418 l~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 496 (693)
+.++++|++|++++|.++.+|. .+..+++|++|++++|.+....+. .+..+++|+.|
T Consensus 81 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------------------~~~~l~~L~~L 138 (270)
T 2o6q_A 81 FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPR----------------------VFDSLTKLTYL 138 (270)
T ss_dssp TSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTT----------------------TTTTCTTCCEE
T ss_pred hcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHH----------------------HhCcCcCCCEE
Confidence 5778999999999999999865 568899999999999988766432 57889999999
Q ss_pred eCCCCCCCCCCCC-ccCCCCCCCCEEeCCCCCCcccCc-cccCCCCCCEEecccccceeec-cCcccccccCCchhhhc-
Q 037483 497 DLSYCGLGEGAIP-NDIGNLCSLKELYLSKNNFVTLPA-SISGLLNLKELELEDCALKLRK-SDCTIIKCIDSLKLLVN- 572 (693)
Q Consensus 497 ~ls~n~l~~~~~p-~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n~~~~~~-~~~~~l~~l~~l~~~~n- 572 (693)
++++|.++. +| ..+..+++|++|++++|.++.+|. .+..+++|++|+|++|++.... ..+..+.+|..+++.+|
T Consensus 139 ~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 139 SLGYNELQS--LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp ECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCcCCc--cCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 999999943 55 458899999999999999998875 5789999999999999984333 23556777777777766
Q ss_pred --chhh-hHHHHHHHH
Q 037483 573 --NGLA-ISMLQEYLE 585 (693)
Q Consensus 573 --~~~~-~~~~~~~~~ 585 (693)
|.+. ..++..|+.
T Consensus 217 ~~c~c~~~~~~~~~l~ 232 (270)
T 2o6q_A 217 WDCTCNGIIYMAKWLK 232 (270)
T ss_dssp BCCSSSSSHHHHHHHH
T ss_pred eeCCCccHHHHHHHHH
Confidence 3332 344555654
No 48
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.80 E-value=1.2e-18 Score=180.54 Aligned_cols=213 Identities=21% Similarity=0.250 Sum_probs=113.8
Q ss_pred cCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCccccc
Q 037483 334 LSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLEN 413 (693)
Q Consensus 334 l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~ 413 (693)
+.++++|++|++++|.+.. ++ .+..+++|++|++++|.++.++. +..+++|++|++++|.....++
T Consensus 84 ~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~----------- 149 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLS----------- 149 (347)
T ss_dssp GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCG-----------
T ss_pred hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCccccc-----------
Confidence 4455555555555553322 22 34555555555555555555443 5555555555555554333322
Q ss_pred ccccccCCCCccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCCcccc--ccccccCCCCchhhhhhcccCCCC
Q 037483 414 VSETLGQVEILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSASWHLH--FPFNLMGKSLYPVALMLFSLSGLC 491 (693)
Q Consensus 414 lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~ 491 (693)
.+..+++|++|++++|.+..++. +..+++|+.|++++|.+....+..... ....+....+.. . ..+..++
T Consensus 150 ---~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~---~-~~~~~~~ 221 (347)
T 4fmz_A 150 ---PLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITD---I-TPVANMT 221 (347)
T ss_dssp ---GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC---C-GGGGGCT
T ss_pred ---chhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCC---C-chhhcCC
Confidence 24445555555555555554433 445555555555555443322100000 000000000000 0 0256677
Q ss_pred cCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCccccCCCCCCEEecccccceeeccCcccccccCCchhhh
Q 037483 492 SLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPASISGLLNLKELELEDCALKLRKSDCTIIKCIDSLKLLV 571 (693)
Q Consensus 492 ~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~l~~l~~~~ 571 (693)
+|+.|++++|.++. ++. +..+++|++|++++|.++.++ .+..+++|++|++++|++... .....+.+|..|++.+
T Consensus 222 ~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~ 296 (347)
T 4fmz_A 222 RLNSLKIGNNKITD--LSP-LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNN 296 (347)
T ss_dssp TCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCS
T ss_pred cCCEEEccCCccCC--Ccc-hhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcC
Confidence 88888888888743 444 777888888888888887764 677788888888888877432 3344555566666555
Q ss_pred cc
Q 037483 572 NN 573 (693)
Q Consensus 572 n~ 573 (693)
|.
T Consensus 297 n~ 298 (347)
T 4fmz_A 297 NQ 298 (347)
T ss_dssp SC
T ss_pred Cc
Confidence 53
No 49
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=2.2e-19 Score=183.25 Aligned_cols=207 Identities=18% Similarity=0.116 Sum_probs=122.0
Q ss_pred CCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCcccc---
Q 037483 336 SLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLE--- 412 (693)
Q Consensus 336 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~--- 412 (693)
.+++|++|++++|.+....|..+..+++|++|+|++|.++.+++ +..+++|++|++++|.+.+..+ +++|+
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~-----~~~L~~L~ 105 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV-----GPSIETLH 105 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC-----CCCcCEEE
Confidence 34455566666555554445555555666666666665554433 5555556666665554332111 01111
Q ss_pred -------cccccccCCCCccEEecCCCccccC-CCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhh
Q 037483 413 -------NVSETLGQVEILEELDISGTTIREP-PSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALML 484 (693)
Q Consensus 413 -------~lp~~l~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (693)
.++ ...+++|++|++++|.++.+ +..+..+++|++|++++|.+....+.
T Consensus 106 l~~n~l~~~~--~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--------------------- 162 (317)
T 3o53_A 106 AANNNISRVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA--------------------- 162 (317)
T ss_dssp CCSSCCSEEE--ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG---------------------
T ss_pred CCCCccCCcC--ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH---------------------
Confidence 111 12356677777777777766 33566777777777777766543211
Q ss_pred ccc-CCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCccccCCCCCCEEecccccceeeccCcccccc
Q 037483 485 FSL-SGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPASISGLLNLKELELEDCALKLRKSDCTIIKC 563 (693)
Q Consensus 485 ~~l-~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~ 563 (693)
.+ ..+++|+.|++++|.++. ++. ...+++|++|++++|.++.+|..+..+++|+.|++++|++.........+++
T Consensus 163 -~~~~~l~~L~~L~L~~N~l~~--~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~ 238 (317)
T 3o53_A 163 -ELAASSDTLEHLNLQYNFIYD--VKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQN 238 (317)
T ss_dssp -GGGGGTTTCCEEECTTSCCCE--EEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTT
T ss_pred -HHhhccCcCCEEECCCCcCcc--ccc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCC
Confidence 22 356777777777777743 433 2347777777777777777776677777777777777777544444555666
Q ss_pred cCCchhhhcchh
Q 037483 564 IDSLKLLVNNGL 575 (693)
Q Consensus 564 l~~l~~~~n~~~ 575 (693)
|..+++.+|...
T Consensus 239 L~~L~l~~N~~~ 250 (317)
T 3o53_A 239 LEHFDLRGNGFH 250 (317)
T ss_dssp CCEEECTTCCCB
T ss_pred CCEEEccCCCcc
Confidence 666666666443
No 50
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=4.6e-19 Score=179.92 Aligned_cols=171 Identities=20% Similarity=0.285 Sum_probs=76.5
Q ss_pred cCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCccccc
Q 037483 334 LSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLEN 413 (693)
Q Consensus 334 l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~ 413 (693)
+..+++|++|++++|.+.. ++. +..+++|++|++++|.++.++ .+..+++|++|++++|.+. .
T Consensus 59 ~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~--------------~ 121 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQIT--------------D 121 (308)
T ss_dssp GGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCC--------------C
T ss_pred hhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCC--------------C
Confidence 3444444444444443322 222 444444444444444444433 2444444444444444221 1
Q ss_pred ccccccCCCCccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcC
Q 037483 414 VSETLGQVEILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSL 493 (693)
Q Consensus 414 lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 493 (693)
++. +..+++|++|++++|.++.++. +..+++|++|++++|.+.... .+..+++|
T Consensus 122 ~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~------------------------~l~~l~~L 175 (308)
T 1h6u_A 122 VTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLT------------------------PLANLSKL 175 (308)
T ss_dssp CGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG------------------------GGTTCTTC
T ss_pred chh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCCh------------------------hhcCCCCC
Confidence 111 3444445555555555544432 444455555555554433220 23444555
Q ss_pred CeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCccccCCCCCCEEecccccc
Q 037483 494 SKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPASISGLLNLKELELEDCAL 551 (693)
Q Consensus 494 ~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~ 551 (693)
+.|++++|.++. ++. +..+++|++|++++|.++.++ .+..+++|+.|++++|++
T Consensus 176 ~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 176 TTLKADDNKISD--ISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CEEECCSSCCCC--CGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEE
T ss_pred CEEECCCCccCc--Chh-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCee
Confidence 555555555422 222 444555555555555555444 244555555555555544
No 51
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=9.6e-19 Score=177.52 Aligned_cols=194 Identities=21% Similarity=0.241 Sum_probs=161.3
Q ss_pred ccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCcccc
Q 037483 333 SLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLE 412 (693)
Q Consensus 333 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~ 412 (693)
....+++|++|++++|.+. .++ .+..+++|++|++++|.++.++. +..+++|++|++++|.+.+
T Consensus 36 ~~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~------------- 99 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN------------- 99 (308)
T ss_dssp CHHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC-------------
T ss_pred cHHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC-------------
Confidence 3456889999999998654 355 57889999999999999998887 9999999999999995332
Q ss_pred cccccccCCCCccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCc
Q 037483 413 NVSETLGQVEILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCS 492 (693)
Q Consensus 413 ~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 492 (693)
++ .+..+++|++|++++|.++.++. +..+++|++|++++|.+.... .+..+++
T Consensus 100 -~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~------------------------~l~~l~~ 152 (308)
T 1h6u_A 100 -VS-AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNIS------------------------PLAGLTN 152 (308)
T ss_dssp -CG-GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCG------------------------GGGGCTT
T ss_pred -ch-hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCc------------------------cccCCCC
Confidence 22 46789999999999999999864 899999999999999876542 3678899
Q ss_pred CCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCccccCCCCCCEEecccccceeeccCcccccccCCchhhhc
Q 037483 493 LSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPASISGLLNLKELELEDCALKLRKSDCTIIKCIDSLKLLVN 572 (693)
Q Consensus 493 L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~l~~l~~~~n 572 (693)
|+.|++++|.+++ ++. +..+++|++|++++|.++.++. +..+++|++|++++|++.... ....+.+|..+++.+|
T Consensus 153 L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 153 LQYLSIGNAQVSD--LTP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQ 227 (308)
T ss_dssp CCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEE
T ss_pred ccEEEccCCcCCC--Chh-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCC
Confidence 9999999999954 555 8899999999999999998885 889999999999999985433 3556667777777666
Q ss_pred ch
Q 037483 573 NG 574 (693)
Q Consensus 573 ~~ 574 (693)
..
T Consensus 228 ~i 229 (308)
T 1h6u_A 228 TI 229 (308)
T ss_dssp EE
T ss_pred ee
Confidence 43
No 52
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.79 E-value=2.7e-19 Score=200.32 Aligned_cols=216 Identities=20% Similarity=0.190 Sum_probs=168.1
Q ss_pred ccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCce-eecCCcCCCCCCCEEecCCCCCCcc--CCCCCCCCc
Q 037483 333 SLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFIT-KLPLSIELLTGLELLNLNDCKNLLR--LPSSIDGCF 409 (693)
Q Consensus 333 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~l~~~~~~l~~L~~L~L~~~~~~~~--lp~~~~~~~ 409 (693)
.+..+++|++|++++|.. +.+|. + .+++|++|++++|... .+ .+..+++|++|++++|.+.+. .|..+.+++
T Consensus 302 ~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~ 376 (606)
T 3vq2_A 302 DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTN 376 (606)
T ss_dssp CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCS
T ss_pred hccccccCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCC
Confidence 566777888888888776 66663 3 7778888888877433 33 456777888888887765544 244444444
Q ss_pred ccc----------cccccccCCCCccEEecCCCccccCC--CccccCCCCCEEEccCCCCCCCCCCccccccccccCCCC
Q 037483 410 KLE----------NVSETLGQVEILEELDISGTTIREPP--SSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSL 477 (693)
Q Consensus 410 ~L~----------~lp~~l~~l~~L~~L~l~~n~i~~lp--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (693)
+|+ .+|..+..+++|++|++++|.+.+.+ ..+..+++|++|++++|.+....+.
T Consensus 377 ~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------------- 442 (606)
T 3vq2_A 377 SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG-------------- 442 (606)
T ss_dssp CCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTT--------------
T ss_pred cccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchh--------------
Confidence 444 45677889999999999999999874 4788999999999999987765433
Q ss_pred chhhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCccc-CccccCCCCCCEEecccccceee-c
Q 037483 478 YPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTL-PASISGLLNLKELELEDCALKLR-K 555 (693)
Q Consensus 478 ~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~~~~~-~ 555 (693)
.+.++++|+.|++++|.++...+|..++.+++|++|++++|.++.+ |..+..+++|++|++++|++... .
T Consensus 443 --------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 514 (606)
T 3vq2_A 443 --------IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 514 (606)
T ss_dssp --------TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEG
T ss_pred --------hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCH
Confidence 6788999999999999985435788999999999999999999965 57789999999999999998433 5
Q ss_pred cCcccccccCCchhhhcchh
Q 037483 556 SDCTIIKCIDSLKLLVNNGL 575 (693)
Q Consensus 556 ~~~~~l~~l~~l~~~~n~~~ 575 (693)
..+..+.+|..|++.+|...
T Consensus 515 ~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 515 SHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp GGTTTCTTCCEEECTTSCCC
T ss_pred HHccCCCcCCEEECCCCcCc
Confidence 56677788888888777543
No 53
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=3.4e-19 Score=192.64 Aligned_cols=209 Identities=18% Similarity=0.122 Sum_probs=126.3
Q ss_pred CCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCC-CC-----CCCccc
Q 037483 338 KCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPS-SI-----DGCFKL 411 (693)
Q Consensus 338 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~-~~-----~~~~~L 411 (693)
++|++|+|++|.+.+..|..+..+++|++|+|++|.++..++ +..+++|++|+|++|.+.+..+. .+ .+ ..+
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~-N~l 111 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAAN-NNI 111 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEECTTCCEEECCS-SCC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCCCCcCEEECcC-CcC
Confidence 356666666655555445555556666666666665554433 55556666666665543322111 00 00 011
Q ss_pred ccccccccCCCCccEEecCCCccccC-CCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccC-C
Q 037483 412 ENVSETLGQVEILEELDISGTTIREP-PSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLS-G 489 (693)
Q Consensus 412 ~~lp~~l~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~ 489 (693)
..++. ..+++|++|++++|.++++ |..+..+++|++|++++|.+....+. .+. .
T Consensus 112 ~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----------------------~l~~~ 167 (487)
T 3oja_A 112 SRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA----------------------ELAAS 167 (487)
T ss_dssp CCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG----------------------GGGGG
T ss_pred CCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH----------------------HHhhh
Confidence 11221 2356777888888877766 45677777888888887766543221 232 5
Q ss_pred CCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCccccCCCCCCEEecccccceeeccCcccccccCCchh
Q 037483 490 LCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPASISGLLNLKELELEDCALKLRKSDCTIIKCIDSLKL 569 (693)
Q Consensus 490 l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~l~~l~~ 569 (693)
+++|+.|+|++|.++. +|. ...+++|++|+|++|.++.+|..+..+++|+.|+|++|.+...+.....+.+|..+++
T Consensus 168 l~~L~~L~Ls~N~l~~--~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l 244 (487)
T 3oja_A 168 SDTLEHLNLQYNFIYD--VKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDL 244 (487)
T ss_dssp TTTCCEEECTTSCCCE--EEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEEC
T ss_pred CCcccEEecCCCcccc--ccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEc
Confidence 6788888888888743 333 3357788888888888887777777788888888888887654555556666666666
Q ss_pred hhcchh
Q 037483 570 LVNNGL 575 (693)
Q Consensus 570 ~~n~~~ 575 (693)
.+|...
T Consensus 245 ~~N~l~ 250 (487)
T 3oja_A 245 RGNGFH 250 (487)
T ss_dssp TTCCBC
T ss_pred CCCCCc
Confidence 666433
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=3.3e-19 Score=185.14 Aligned_cols=188 Identities=20% Similarity=0.218 Sum_probs=153.9
Q ss_pred cCccccccccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeec-CCcCCCCCCCEEecCCCCCCccCCC
Q 037483 325 KNLSSLLISLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLP-LSIELLTGLELLNLNDCKNLLRLPS 403 (693)
Q Consensus 325 ~~L~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~L~~~~~~~~lp~ 403 (693)
.+++.+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.++.++ ..+..+++|++|++++|.+
T Consensus 41 ~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l------ 112 (353)
T 2z80_A 41 GSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL------ 112 (353)
T ss_dssp TTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC------
T ss_pred CCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC------
Confidence 35677776544 58999999999877666668999999999999999999875 5689999999999999843
Q ss_pred CCCCCccccccccc-ccCCCCccEEecCCCccccCCC--ccccCCCCCEEEccCCC-CCCCCCCccccccccccCCCCch
Q 037483 404 SIDGCFKLENVSET-LGQVEILEELDISGTTIREPPS--SIFAIKNLKKLSFSGCS-GPPSSASWHLHFPFNLMGKSLYP 479 (693)
Q Consensus 404 ~~~~~~~L~~lp~~-l~~l~~L~~L~l~~n~i~~lp~--~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 479 (693)
..+|.. ++++++|++|++++|.++.+|. .+..+++|++|++++|. +....+.
T Consensus 113 --------~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~---------------- 168 (353)
T 2z80_A 113 --------SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK---------------- 168 (353)
T ss_dssp --------SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT----------------
T ss_pred --------CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHH----------------
Confidence 334443 7889999999999999999976 68899999999999985 3322211
Q ss_pred hhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCccc-cCCCCCCEEecccccc
Q 037483 480 VALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPASI-SGLLNLKELELEDCAL 551 (693)
Q Consensus 480 ~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l-~~l~~L~~L~L~~n~~ 551 (693)
.+.++++|+.|++++|.+ .+..|..+..+++|++|++++|.++.+|..+ ..+++|+.|++++|.+
T Consensus 169 ------~~~~l~~L~~L~l~~n~l-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 234 (353)
T 2z80_A 169 ------DFAGLTFLEELEIDASDL-QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL 234 (353)
T ss_dssp ------TTTTCCEEEEEEEEETTC-CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBC
T ss_pred ------HccCCCCCCEEECCCCCc-CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcc
Confidence 577889999999999998 4556788899999999999999998887544 4588999999999987
No 55
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.79 E-value=2.5e-18 Score=171.38 Aligned_cols=181 Identities=19% Similarity=0.241 Sum_probs=150.1
Q ss_pred ccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCcccc
Q 037483 333 SLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLE 412 (693)
Q Consensus 333 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~ 412 (693)
.+..+++|+.|++++|... .++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.+.+..+
T Consensus 36 ~~~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~---------- 102 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPN---------- 102 (272)
T ss_dssp CHHHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCT----------
T ss_pred ccccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccCh----------
Confidence 4556889999999998644 333 4788999999999999999875 68899999999999996543322
Q ss_pred cccccccCCCCccEEecCCCccccCCCc-cccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCC
Q 037483 413 NVSETLGQVEILEELDISGTTIREPPSS-IFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLC 491 (693)
Q Consensus 413 ~lp~~l~~l~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 491 (693)
..++++++|++|++++|.++.+|.. +..+++|++|++++|.+....+. .+..++
T Consensus 103 ---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----------------------~~~~l~ 157 (272)
T 3rfs_A 103 ---GVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG----------------------VFDKLT 157 (272)
T ss_dssp ---TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----------------------TTTTCT
T ss_pred ---hHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHH----------------------HhccCc
Confidence 2357788999999999999988654 78999999999999987755432 578899
Q ss_pred cCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCc-cccCCCCCCEEecccccce
Q 037483 492 SLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPA-SISGLLNLKELELEDCALK 552 (693)
Q Consensus 492 ~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n~~~ 552 (693)
+|+.|++++|.++ +..+..++.+++|++|++++|.++.+|. .+..+++|++|++++|++.
T Consensus 158 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 158 NLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCEEECCCCCcC-ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence 9999999999994 4445567899999999999999997774 4789999999999999874
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=4.8e-19 Score=191.44 Aligned_cols=194 Identities=18% Similarity=0.162 Sum_probs=159.9
Q ss_pred ccccc-cccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCC
Q 037483 327 LSSLL-ISLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSI 405 (693)
Q Consensus 327 L~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~ 405 (693)
+..++ ..+..+++|++|+|++|.+.+..| +..+++|++|+|++|.++.+|.. ++|++|++++|.+.+..+..+
T Consensus 46 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~~N~l~~~~~~~l 119 (487)
T 3oja_A 46 LSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETLHAANNNISRVSCSRG 119 (487)
T ss_dssp CCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEEECCSSCCCCEEECCC
T ss_pred CCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC----CCcCEEECcCCcCCCCCcccc
Confidence 44443 478899999999999998776655 88999999999999999987743 889999999998877666544
Q ss_pred CCCcc-------cccc-cccccCCCCccEEecCCCccccC-CCccc-cCCCCCEEEccCCCCCCCCCCccccccccccCC
Q 037483 406 DGCFK-------LENV-SETLGQVEILEELDISGTTIREP-PSSIF-AIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGK 475 (693)
Q Consensus 406 ~~~~~-------L~~l-p~~l~~l~~L~~L~l~~n~i~~l-p~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 475 (693)
.++.. +..+ |..++++++|++|++++|.+++. |..+. .+++|++|++++|.+....
T Consensus 120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~-------------- 185 (487)
T 3oja_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK-------------- 185 (487)
T ss_dssp SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--------------
T ss_pred CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc--------------
Confidence 33222 2222 56788999999999999999975 66665 7999999999999876542
Q ss_pred CCchhhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCccccCCCCCCEEecccccce
Q 037483 476 SLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPASISGLLNLKELELEDCALK 552 (693)
Q Consensus 476 ~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~ 552 (693)
....+++|+.|++++|.++. +|..+..+++|+.|+|++|.++.+|..+..+++|+.|++++|++.
T Consensus 186 ----------~~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 186 ----------GQVVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp ----------CCCCCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred ----------ccccCCCCCEEECCCCCCCC--CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 34468999999999999954 777799999999999999999999999999999999999999874
No 57
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.79 E-value=6.5e-18 Score=186.96 Aligned_cols=86 Identities=22% Similarity=0.197 Sum_probs=57.3
Q ss_pred CCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCccccCCCCCCEEecccccceeeccC-cccccccCC
Q 037483 488 SGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPASISGLLNLKELELEDCALKLRKSD-CTIIKCIDS 566 (693)
Q Consensus 488 ~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~~~-~~~l~~l~~ 566 (693)
..+++|+.|++++|.++ +.+|..+. ++|++|++++|+++.+|..+..+++|++|+|++|++...... ...+.+|..
T Consensus 425 ~~l~~L~~L~l~~n~l~-~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~ 501 (562)
T 3a79_B 425 AWAESILVLNLSSNMLT-GSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQY 501 (562)
T ss_dssp CCCTTCCEEECCSSCCC-GGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCC
T ss_pred cCcccCCEEECCCCCCC-cchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCE
Confidence 33444444444444442 22333222 688888888888888988888999999999999998643333 667777788
Q ss_pred chhhhcchhh
Q 037483 567 LKLLVNNGLA 576 (693)
Q Consensus 567 l~~~~n~~~~ 576 (693)
+++.+|...+
T Consensus 502 L~l~~N~~~c 511 (562)
T 3a79_B 502 IWLHDNPWDC 511 (562)
T ss_dssp EECCSCCBCC
T ss_pred EEecCCCcCC
Confidence 8887774433
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.78 E-value=4.5e-19 Score=181.02 Aligned_cols=194 Identities=18% Similarity=0.154 Sum_probs=155.5
Q ss_pred ccccc-cccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCC
Q 037483 327 LSSLL-ISLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSI 405 (693)
Q Consensus 327 L~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~ 405 (693)
++.++ ..+.++++|++|++++|.+.+..+ +..+++|++|++++|.++.++. .++|++|++++|.+.+..+..+
T Consensus 46 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~~n~l~~~~~~~~ 119 (317)
T 3o53_A 46 LSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCSRG 119 (317)
T ss_dssp CCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSCCSEEEECCC
T ss_pred cCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccC----CCCcCEEECCCCccCCcCcccc
Confidence 34443 367889999999999988766554 8889999999999999987763 3788999999888776655544
Q ss_pred CCCcc-------cccc-cccccCCCCccEEecCCCccccC-CCcc-ccCCCCCEEEccCCCCCCCCCCccccccccccCC
Q 037483 406 DGCFK-------LENV-SETLGQVEILEELDISGTTIREP-PSSI-FAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGK 475 (693)
Q Consensus 406 ~~~~~-------L~~l-p~~l~~l~~L~~L~l~~n~i~~l-p~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 475 (693)
.++.. +..+ +..++.+++|++|++++|.++.+ +..+ ..+++|++|++++|.+....
T Consensus 120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~-------------- 185 (317)
T 3o53_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK-------------- 185 (317)
T ss_dssp SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--------------
T ss_pred CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc--------------
Confidence 32221 2223 34678899999999999999987 4445 47899999999999876442
Q ss_pred CCchhhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCccccCCCCCCEEecccccce
Q 037483 476 SLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPASISGLLNLKELELEDCALK 552 (693)
Q Consensus 476 ~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~ 552 (693)
....+++|+.|++++|.++. +|..+..+++|++|++++|.++.+|..+..+++|+.|++++|++.
T Consensus 186 ----------~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 186 ----------GQVVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp ----------CCCCCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred ----------cccccccCCEEECCCCcCCc--chhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence 33457899999999999954 777799999999999999999999999999999999999999984
No 59
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.78 E-value=1.8e-18 Score=200.38 Aligned_cols=125 Identities=22% Similarity=0.179 Sum_probs=79.3
Q ss_pred ccccCCCCCCcEEEcCCCCCcccc-hhhhcCccccceeccCCcCceee-cCCcCCCCCCCEEecCCCCCCccCCCC--CC
Q 037483 331 LISLSSLKCLRTLELSGCSKLKRF-LEIVASMEDLSELYLDGTFITKL-PLSIELLTGLELLNLNDCKNLLRLPSS--ID 406 (693)
Q Consensus 331 ~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~L~~~~~~~~lp~~--~~ 406 (693)
+..+.++++|++|++++|.....+ |..+.++++|++|+|++|.++.+ |..+.++++|++|+|++|.+.+.+|.. +.
T Consensus 41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 120 (844)
T 3j0a_A 41 ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120 (844)
T ss_dssp SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCS
T ss_pred hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccc
Confidence 346677777777777777555544 56677777777777777777755 566777777777777777776655554 55
Q ss_pred CCcccccc------------cccccCCCCccEEecCCCccccC-CCccccC--CCCCEEEccCC
Q 037483 407 GCFKLENV------------SETLGQVEILEELDISGTTIREP-PSSIFAI--KNLKKLSFSGC 455 (693)
Q Consensus 407 ~~~~L~~l------------p~~l~~l~~L~~L~l~~n~i~~l-p~~~~~l--~~L~~L~l~~~ 455 (693)
++++|+.+ +..++++++|++|++++|.++.+ +..+..+ ++|+.|++++|
T Consensus 121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n 184 (844)
T 3j0a_A 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 184 (844)
T ss_dssp SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCS
T ss_pred ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCC
Confidence 66655532 23566777777777777766544 3334333 34444444443
No 60
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=2.3e-18 Score=173.14 Aligned_cols=172 Identities=23% Similarity=0.339 Sum_probs=147.8
Q ss_pred ccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCcccc
Q 037483 333 SLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLE 412 (693)
Q Consensus 333 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~ 412 (693)
.+..+++|+.|++++|.+.. ++ .+..+++|++|++++|.++.++. +..+++|++|++++|.+.
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~-------------- 103 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVK-------------- 103 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC--------------
T ss_pred chhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCC--------------
Confidence 34567899999999986543 44 47889999999999999998877 999999999999998543
Q ss_pred cccccccCCCCccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCc
Q 037483 413 NVSETLGQVEILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCS 492 (693)
Q Consensus 413 ~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 492 (693)
.+| .++.+++|++|++++|.++.+ ..+..+++|+.|++++|.+.... .+..+++
T Consensus 104 ~~~-~l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~~------------------------~l~~l~~ 157 (291)
T 1h6t_A 104 DLS-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDIT------------------------VLSRLTK 157 (291)
T ss_dssp CGG-GGTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCCG------------------------GGGGCTT
T ss_pred CCh-hhccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCCcCCcch------------------------hhccCCC
Confidence 222 378899999999999999987 47889999999999999876541 6788899
Q ss_pred CCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCccccCCCCCCEEecccccc
Q 037483 493 LSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPASISGLLNLKELELEDCAL 551 (693)
Q Consensus 493 L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~ 551 (693)
|+.|++++|.++. ++. +..+++|++|++++|.++.+| .+..+++|+.|++++|++
T Consensus 158 L~~L~L~~N~l~~--~~~-l~~l~~L~~L~L~~N~i~~l~-~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 158 LDTLSLEDNQISD--IVP-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp CSEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEEEEEE
T ss_pred CCEEEccCCcccc--chh-hcCCCccCEEECCCCcCCCCh-hhccCCCCCEEECcCCcc
Confidence 9999999999954 544 889999999999999999987 589999999999999988
No 61
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.77 E-value=3.7e-18 Score=188.73 Aligned_cols=80 Identities=20% Similarity=0.203 Sum_probs=52.6
Q ss_pred ccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCcee--ecCCcCCCCCCCEEecCCCCCCccCC-CCCCCCc
Q 037483 333 SLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITK--LPLSIELLTGLELLNLNDCKNLLRLP-SSIDGCF 409 (693)
Q Consensus 333 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~--l~~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~~~ 409 (693)
.+.++++|++|++++|.+.+..+..++++++|++|++++|.++. .|..+..+++|++|++++|...+.+| ..+.+++
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence 46667777777777776666666667777777777777777763 35566777777777777776555554 3455554
Q ss_pred ccc
Q 037483 410 KLE 412 (693)
Q Consensus 410 ~L~ 412 (693)
+|+
T Consensus 149 ~L~ 151 (549)
T 2z81_A 149 SLN 151 (549)
T ss_dssp EEE
T ss_pred ccC
Confidence 444
No 62
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.77 E-value=3.8e-18 Score=193.65 Aligned_cols=218 Identities=22% Similarity=0.200 Sum_probs=129.8
Q ss_pred CCcEEEcCCCCCcccchhhhcCccccceeccCCcCce-eec-CCcCCCCCCCEEecCCCCCCccCCCCCCCCcccc----
Q 037483 339 CLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFIT-KLP-LSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLE---- 412 (693)
Q Consensus 339 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~l~-~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~---- 412 (693)
+|+.|++++|.+.+..|..+..+++|++|++++|.++ .+| ..+..+++|++|++++|.+....+..+..+++|+
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 461 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchh
Confidence 4555555555555555556666666666666666665 343 3456666666666666665555555554444443
Q ss_pred ---------cccccccCCCCccEEecCCCccccCCC-ccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhh
Q 037483 413 ---------NVSETLGQVEILEELDISGTTIREPPS-SIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVAL 482 (693)
Q Consensus 413 ---------~lp~~l~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (693)
.+|..++++++|++|++++|.++.+|. .+..+++|++|++++|.+....... .++.
T Consensus 462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-------~~~~------- 527 (680)
T 1ziw_A 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHA-------NPGG------- 527 (680)
T ss_dssp TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTT-------STTS-------
T ss_pred ccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhh-------ccCC-------
Confidence 234556666667777777776666643 3566667777777766554321100 0000
Q ss_pred hhcccCCCCcCCeeeCCCCCCCCCCCCc-cCCCCCCCCEEeCCCCCCcccCcc-ccCCCCCCEEecccccceeeccC-cc
Q 037483 483 MLFSLSGLCSLSKLDLSYCGLGEGAIPN-DIGNLCSLKELYLSKNNFVTLPAS-ISGLLNLKELELEDCALKLRKSD-CT 559 (693)
Q Consensus 483 ~~~~l~~l~~L~~L~ls~n~l~~~~~p~-~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n~~~~~~~~-~~ 559 (693)
....+.++++|+.|++++|.++ .+|. .+..+++|++|+|++|+++.+|.. +..+++|+.|++++|+++..... ..
T Consensus 528 ~~~~~~~l~~L~~L~L~~N~l~--~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 605 (680)
T 1ziw_A 528 PIYFLKGLSHLHILNLESNGFD--EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG 605 (680)
T ss_dssp CCCTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHH
T ss_pred cchhhcCCCCCCEEECCCCCCC--CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhc
Confidence 0013667778888888888874 3554 477788888888888888877754 56778888888888877432221 12
Q ss_pred -cccccCCchhhhc
Q 037483 560 -IIKCIDSLKLLVN 572 (693)
Q Consensus 560 -~l~~l~~l~~~~n 572 (693)
.+.+|..+++.+|
T Consensus 606 ~~~~~L~~l~l~~N 619 (680)
T 1ziw_A 606 PAFRNLTELDMRFN 619 (680)
T ss_dssp HHHTTCSEEECTTC
T ss_pred ccccccCEEEccCC
Confidence 3455555555555
No 63
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.77 E-value=2.6e-18 Score=190.91 Aligned_cols=67 Identities=25% Similarity=0.225 Sum_probs=45.5
Q ss_pred ccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCcee--ecCCcCCCCCCCEEecCCCCCCc
Q 037483 333 SLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITK--LPLSIELLTGLELLNLNDCKNLL 399 (693)
Q Consensus 333 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~--l~~~~~~l~~L~~L~L~~~~~~~ 399 (693)
.+.++++|++|++++|.+....+..++++++|++|++++|.++. +|..+.++++|++|++++|.+.+
T Consensus 95 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp TTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE
T ss_pred hhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce
Confidence 45666677777777665444333346777777788887777764 56677778888888887776543
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.76 E-value=5.1e-20 Score=187.58 Aligned_cols=200 Identities=20% Similarity=0.163 Sum_probs=148.2
Q ss_pred CcEEEcCCCCC-cccchhhhc-------CccccceeccCCcCce-eecCCc--CCCCCCCEEecCCCCCCccCCCCCCCC
Q 037483 340 LRTLELSGCSK-LKRFLEIVA-------SMEDLSELYLDGTFIT-KLPLSI--ELLTGLELLNLNDCKNLLRLPSSIDGC 408 (693)
Q Consensus 340 L~~L~l~~~~~-~~~~~~~~~-------~l~~L~~L~L~~~~l~-~l~~~~--~~l~~L~~L~L~~~~~~~~lp~~~~~~ 408 (693)
|+.|++++|.+ ...+|..+. ++++|++|++++|.++ .+|..+ ..+++|++|++++|.+.+. |
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~------ 137 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-D------ 137 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-S------
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-h------
Confidence 77788887765 234555444 6888889999888887 567765 7888899999988865443 3
Q ss_pred cccccccccccCC-----CCccEEecCCCccccCC-CccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhh
Q 037483 409 FKLENVSETLGQV-----EILEELDISGTTIREPP-SSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVAL 482 (693)
Q Consensus 409 ~~L~~lp~~l~~l-----~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (693)
..++.+ ++|++|++++|.++.++ ..+..+++|++|++++|.+.... .
T Consensus 138 -------~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--------------------~ 190 (312)
T 1wwl_A 138 -------AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER--------------------G 190 (312)
T ss_dssp -------SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHH--------------------H
T ss_pred -------HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcch--------------------H
Confidence 333444 89999999999999885 78999999999999999754321 0
Q ss_pred hhc--ccCCCCcCCeeeCCCCCCCC-CCCC-ccCCCCCCCCEEeCCCCCCcccC--ccccCCCCCCEEecccccceeecc
Q 037483 483 MLF--SLSGLCSLSKLDLSYCGLGE-GAIP-NDIGNLCSLKELYLSKNNFVTLP--ASISGLLNLKELELEDCALKLRKS 556 (693)
Q Consensus 483 ~~~--~l~~l~~L~~L~ls~n~l~~-~~~p-~~l~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~L~~n~~~~~~~ 556 (693)
.+. .+..+++|+.|++++|.++. +.++ ..+..+++|++|++++|.++..+ ..+..+++|++|+|++|.+...+.
T Consensus 191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~ 270 (312)
T 1wwl_A 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK 270 (312)
T ss_dssp HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCS
T ss_pred HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhh
Confidence 011 23788999999999999942 0122 23457899999999999999654 456778999999999999963333
Q ss_pred CcccccccCCchhhhcchh
Q 037483 557 DCTIIKCIDSLKLLVNNGL 575 (693)
Q Consensus 557 ~~~~l~~l~~l~~~~n~~~ 575 (693)
... .+|..|++..|...
T Consensus 271 ~~~--~~L~~L~Ls~N~l~ 287 (312)
T 1wwl_A 271 GLP--AKLSVLDLSYNRLD 287 (312)
T ss_dssp SCC--SEEEEEECCSSCCC
T ss_pred hcc--CCceEEECCCCCCC
Confidence 332 67777888777554
No 65
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.76 E-value=1e-17 Score=190.22 Aligned_cols=221 Identities=24% Similarity=0.257 Sum_probs=130.4
Q ss_pred ccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCc----------------------------Cceee-cCCcCC
Q 037483 333 SLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGT----------------------------FITKL-PLSIEL 383 (693)
Q Consensus 333 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~----------------------------~l~~l-~~~~~~ 383 (693)
.+..+++|++|++++|.+.+..+..+.++++|++|++++| .++.+ |..+..
T Consensus 324 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 403 (680)
T 1ziw_A 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403 (680)
T ss_dssp TTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT
T ss_pred hcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC
Confidence 3445566666666666555555555555555655555554 33322 233444
Q ss_pred CCCCCEEecCCCCCCccCC-CCCCCCcccccc-----------cccccCCCCccEEecCCCccc---cCCCccccCCCCC
Q 037483 384 LTGLELLNLNDCKNLLRLP-SSIDGCFKLENV-----------SETLGQVEILEELDISGTTIR---EPPSSIFAIKNLK 448 (693)
Q Consensus 384 l~~L~~L~L~~~~~~~~lp-~~~~~~~~L~~l-----------p~~l~~l~~L~~L~l~~n~i~---~lp~~~~~l~~L~ 448 (693)
+++|++|++++|.+.+.+| ..+.++++|+.+ +..+..+++|++|++++|.+. .+|..+..+++|+
T Consensus 404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~ 483 (680)
T 1ziw_A 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483 (680)
T ss_dssp CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCC
Confidence 5555555555554444443 233333333321 223344445555555555443 2244555555555
Q ss_pred EEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCeeeCCCCCCCCC---CCC----ccCCCCCCCCEE
Q 037483 449 KLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEG---AIP----NDIGNLCSLKEL 521 (693)
Q Consensus 449 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~---~~p----~~l~~l~~L~~L 521 (693)
.|++++|.+....+. .+.++++|+.|++++|.++.- .+| ..+..+++|++|
T Consensus 484 ~L~Ls~N~l~~i~~~----------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L 541 (680)
T 1ziw_A 484 ILDLSNNNIANINDD----------------------MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541 (680)
T ss_dssp EEECCSSCCCCCCTT----------------------TTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEE
T ss_pred EEECCCCCCCcCChh----------------------hhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEE
Confidence 555555554433221 577888999999999988430 111 237888999999
Q ss_pred eCCCCCCcccCc-cccCCCCCCEEecccccceeec-cCcccccccCCchhhhcchh
Q 037483 522 YLSKNNFVTLPA-SISGLLNLKELELEDCALKLRK-SDCTIIKCIDSLKLLVNNGL 575 (693)
Q Consensus 522 ~L~~n~l~~lp~-~l~~l~~L~~L~L~~n~~~~~~-~~~~~l~~l~~l~~~~n~~~ 575 (693)
+|++|.++.+|. .+.++++|+.|++++|+++... ..+..+.+|..|++..|...
T Consensus 542 ~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 597 (680)
T 1ziw_A 542 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred ECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCC
Confidence 999999998885 5788999999999999885333 33456677777777776443
No 66
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.76 E-value=1.5e-17 Score=163.50 Aligned_cols=175 Identities=21% Similarity=0.236 Sum_probs=139.9
Q ss_pred CCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecC-CcCCCCCCCEEecCCCCCCccCCCCCCCCcccccccc
Q 037483 338 KCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPL-SIELLTGLELLNLNDCKNLLRLPSSIDGCFKLENVSE 416 (693)
Q Consensus 338 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~lp~ 416 (693)
...++++++++. ...+|..+. ++|+.|+|++|.++.++. .+..+++|++|+|++|.+.+..|.
T Consensus 14 ~~~~~l~~~~~~-l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------- 77 (251)
T 3m19_A 14 EGKKEVDCQGKS-LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAG------------- 77 (251)
T ss_dssp GGGTEEECTTCC-CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT-------------
T ss_pred CCCeEEecCCCC-ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHh-------------
Confidence 356788888865 445665543 589999999999987654 578899999999999865544332
Q ss_pred cccCCCCccEEecCCCccccCC-CccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCe
Q 037483 417 TLGQVEILEELDISGTTIREPP-SSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSK 495 (693)
Q Consensus 417 ~l~~l~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 495 (693)
.+..+++|++|++++|.++.+| ..+..+++|++|++++|.+....+. .+..+++|+.
T Consensus 78 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----------------------~~~~l~~L~~ 135 (251)
T 3m19_A 78 VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSG----------------------VFDRLTKLKE 135 (251)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----------------------TTTTCTTCCE
T ss_pred HhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChh----------------------HhccCCcccE
Confidence 3567888999999999999885 4568899999999999988755432 4678899999
Q ss_pred eeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCc-cccCCCCCCEEecccccc
Q 037483 496 LDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPA-SISGLLNLKELELEDCAL 551 (693)
Q Consensus 496 L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n~~ 551 (693)
|++++|.++ +..+..++.+++|++|+|++|.++.+|. .+..+++|+.|++++|++
T Consensus 136 L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 136 LRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred EECcCCcCC-ccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 999999994 3333468899999999999999998774 688899999999999987
No 67
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.76 E-value=2.1e-17 Score=176.86 Aligned_cols=173 Identities=24% Similarity=0.152 Sum_probs=106.2
Q ss_pred cCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCccccc
Q 037483 334 LSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLEN 413 (693)
Q Consensus 334 l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~ 413 (693)
+..+++|++|++++|.+.+ ++ ++++++|++|++++|.++.++ +..+++|++|++++|.+.+ ++ +.++++|+.
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~ 152 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTE 152 (457)
T ss_dssp CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCE
T ss_pred cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccce-ec--cccCCcCCE
Confidence 5566666777776665444 22 556666777777777666654 6666677777777665544 22 344444433
Q ss_pred cc---------ccccCCCCccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhh
Q 037483 414 VS---------ETLGQVEILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALML 484 (693)
Q Consensus 414 lp---------~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (693)
+. -.++.+++|++|++++|.++++| +..+++|+.|++++|.+...
T Consensus 153 L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~------------------------ 206 (457)
T 3bz5_A 153 LDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL------------------------ 206 (457)
T ss_dssp EECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC------------------------
T ss_pred EECCCCCcccccccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCee------------------------
Confidence 21 12456667777777777777665 56667777777777665543
Q ss_pred cccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCccccCCCCCCEEecc
Q 037483 485 FSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPASISGLLNLKELELE 547 (693)
Q Consensus 485 ~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~ 547 (693)
.+..+++|+.|++++|.++. +| ++.+++|+.|++++|.++.+| +..+++|+.|+++
T Consensus 207 -~l~~l~~L~~L~Ls~N~l~~--ip--~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~ 262 (457)
T 3bz5_A 207 -DLNQNIQLTFLDCSSNKLTE--ID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCI 262 (457)
T ss_dssp -CCTTCTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECT
T ss_pred -ccccCCCCCEEECcCCcccc--cC--ccccCCCCEEEeeCCcCCCcC--HHHCCCCCEEecc
Confidence 35666777777777777743 55 667777777777777777665 3334444433333
No 68
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.76 E-value=3.4e-18 Score=187.57 Aligned_cols=245 Identities=17% Similarity=0.171 Sum_probs=158.0
Q ss_pred ccccc-cccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCc-cCCCC
Q 037483 327 LSSLL-ISLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLL-RLPSS 404 (693)
Q Consensus 327 L~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~-~lp~~ 404 (693)
++.++ ..+.++++|++|++++|.+.+..|..+.++++|++|+|++|.++.+|.. .+++|++|++++|.+.+ .+|..
T Consensus 33 i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~ 110 (520)
T 2z7x_B 33 ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKE 110 (520)
T ss_dssp CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGG
T ss_pred ccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhh
Confidence 33443 3577788888888888877776677888888888888888888888776 78888888888887766 46666
Q ss_pred CCCCccccccc--------ccccCCCCc--cEEecCCCcc--c-cCCCccccC--------------------------C
Q 037483 405 IDGCFKLENVS--------ETLGQVEIL--EELDISGTTI--R-EPPSSIFAI--------------------------K 445 (693)
Q Consensus 405 ~~~~~~L~~lp--------~~l~~l~~L--~~L~l~~n~i--~-~lp~~~~~l--------------------------~ 445 (693)
+.++++|+.+. ..+..+++| ++|++++|.+ . ..|..+..+ +
T Consensus 111 ~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~ 190 (520)
T 2z7x_B 111 FGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVA 190 (520)
T ss_dssp GGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCS
T ss_pred hccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhccc
Confidence 66666666442 334555666 7777777766 2 123333221 1
Q ss_pred ---------------------------------------------------------CCCEEEccCCCCCCCCCCcc---
Q 037483 446 ---------------------------------------------------------NLKKLSFSGCSGPPSSASWH--- 465 (693)
Q Consensus 446 ---------------------------------------------------------~L~~L~l~~~~~~~~~~~~~--- 465 (693)
+|++|++++|.+.+..+...
T Consensus 191 ~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~ 270 (520)
T 2z7x_B 191 NLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDY 270 (520)
T ss_dssp EEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCC
T ss_pred ceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhc
Confidence 34444444444332222111
Q ss_pred --cccc----ccccCC--CCch--hh-----------------hhhcc-cCCCCcCCeeeCCCCCCCCCCCCccCCCCCC
Q 037483 466 --LHFP----FNLMGK--SLYP--VA-----------------LMLFS-LSGLCSLSKLDLSYCGLGEGAIPNDIGNLCS 517 (693)
Q Consensus 466 --~~~~----~~~~~~--~~~~--~~-----------------~~~~~-l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~ 517 (693)
.... ..+... .++. .. ..... ...+++|++|++++|.+ .+.+|..++.+++
T Consensus 271 ~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~ 349 (520)
T 2z7x_B 271 SGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL-TDTVFENCGHLTE 349 (520)
T ss_dssp CSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCC-CTTTTTTCCCCSS
T ss_pred ccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCcc-ChhhhhhhccCCC
Confidence 0000 000000 0000 00 00001 16788999999999999 4567888999999
Q ss_pred CCEEeCCCCCCcc---cCccccCCCCCCEEeccccccee--eccCcccccccCCchhhhcch
Q 037483 518 LKELYLSKNNFVT---LPASISGLLNLKELELEDCALKL--RKSDCTIIKCIDSLKLLVNNG 574 (693)
Q Consensus 518 L~~L~L~~n~l~~---lp~~l~~l~~L~~L~L~~n~~~~--~~~~~~~l~~l~~l~~~~n~~ 574 (693)
|++|++++|.++. +|..+..+++|++|++++|.+.. ....+..+++|..|++..|..
T Consensus 350 L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l 411 (520)
T 2z7x_B 350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL 411 (520)
T ss_dssp CCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCC
T ss_pred CCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCC
Confidence 9999999999994 55678999999999999999853 333467777888887776643
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=5.2e-17 Score=179.07 Aligned_cols=223 Identities=21% Similarity=0.158 Sum_probs=133.6
Q ss_pred CccccccccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCC
Q 037483 326 NLSSLLISLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSI 405 (693)
Q Consensus 326 ~L~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~ 405 (693)
+++.+|..+. ++|++|++++|.+. .+|. .+++|++|+|++|.++.+|. .+++|++|++++|.+.+ +|..+
T Consensus 51 ~L~~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~-l~~~l 120 (622)
T 3g06_A 51 GLTTLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTH-LPALP 120 (622)
T ss_dssp CCSCCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCC-CCCCC
T ss_pred CcCccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCC-CCCCC
Confidence 4556665444 67777777776543 4443 45677777777777776665 55667777777665433 33322
Q ss_pred CCCc-------ccccccccccCCCCccEEecCCCccccCCCccc-----------------cCCCCCEEEccCCCCCCCC
Q 037483 406 DGCF-------KLENVSETLGQVEILEELDISGTTIREPPSSIF-----------------AIKNLKKLSFSGCSGPPSS 461 (693)
Q Consensus 406 ~~~~-------~L~~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~-----------------~l~~L~~L~l~~~~~~~~~ 461 (693)
.++. ++..+|.. +++|++|++++|.++.+|..+. .+++|+.|++++|.+....
T Consensus 121 ~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~ 197 (622)
T 3g06_A 121 SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLP 197 (622)
T ss_dssp TTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCC
T ss_pred CCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCC
Confidence 1111 12233332 3556666666666665543221 2266777777777665432
Q ss_pred CCccccccccccCCCCchhhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCccccCCCCC
Q 037483 462 ASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPASISGLLNL 541 (693)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L 541 (693)
........+.+....+.. + -..+++|+.|++++|.++. +| ..+++|++|+|++|.++.+|. .+++|
T Consensus 198 ~~~~~L~~L~L~~N~l~~---l---~~~~~~L~~L~Ls~N~L~~--lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L 263 (622)
T 3g06_A 198 TLPSELYKLWAYNNRLTS---L---PALPSGLKELIVSGNRLTS--LP---VLPSELKELMVSGNRLTSLPM---LPSGL 263 (622)
T ss_dssp CCCTTCCEEECCSSCCSS---C---CCCCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSCCCC---CCTTC
T ss_pred CccchhhEEECcCCcccc---c---CCCCCCCCEEEccCCccCc--CC---CCCCcCcEEECCCCCCCcCCc---ccccC
Confidence 211100011111111111 0 1123789999999999854 66 456899999999999999986 67899
Q ss_pred CEEecccccceeeccCcccccccCCchhhhcchh
Q 037483 542 KELELEDCALKLRKSDCTIIKCIDSLKLLVNNGL 575 (693)
Q Consensus 542 ~~L~L~~n~~~~~~~~~~~l~~l~~l~~~~n~~~ 575 (693)
+.|+|++|++...+..+..+++|..|++.+|...
T Consensus 264 ~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 264 LSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp CEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred cEEeCCCCCCCcCCHHHhhccccCEEEecCCCCC
Confidence 9999999998644455666777777777777654
No 70
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.76 E-value=1.6e-18 Score=176.46 Aligned_cols=198 Identities=18% Similarity=0.136 Sum_probs=92.7
Q ss_pred CCCcEEEcCCCCCcccchhhh--cCccccceeccCCcCceeec-----CCcCCCCCCCEEecCCCCCCccCCCCCCCCcc
Q 037483 338 KCLRTLELSGCSKLKRFLEIV--ASMEDLSELYLDGTFITKLP-----LSIELLTGLELLNLNDCKNLLRLPSSIDGCFK 410 (693)
Q Consensus 338 ~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~L~~~~l~~l~-----~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~ 410 (693)
++|++|++++|.+.+..|..+ ..+++|++|++++|.++... ..+..+++|++|++++|.+.+..|.
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~------- 163 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCE------- 163 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTT-------
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHH-------
Confidence 345666666655555555444 55566666666666555311 1123455666666666544332222
Q ss_pred cccccccccCCCCccEEecCCCcccc---C--CCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhc
Q 037483 411 LENVSETLGQVEILEELDISGTTIRE---P--PSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLF 485 (693)
Q Consensus 411 L~~lp~~l~~l~~L~~L~l~~n~i~~---l--p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (693)
.++.+++|++|++++|.+.+ + +..+..+++|++|++++|.+.... ....
T Consensus 164 ------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~--------------------~~~~ 217 (310)
T 4glp_A 164 ------QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPT--------------------GVCA 217 (310)
T ss_dssp ------SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHH--------------------HHHH
T ss_pred ------HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchH--------------------HHHH
Confidence 23444555555555555432 2 112244555555555555442110 0000
Q ss_pred -ccCCCCcCCeeeCCCCCCCCCCCCccCCCC---CCCCEEeCCCCCCcccCccccCCCCCCEEecccccceeeccCcccc
Q 037483 486 -SLSGLCSLSKLDLSYCGLGEGAIPNDIGNL---CSLKELYLSKNNFVTLPASISGLLNLKELELEDCALKLRKSDCTII 561 (693)
Q Consensus 486 -~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l---~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~l 561 (693)
.+..+++|++|++++|.++ +..|..+..+ ++|++|+|++|.++.+|..+. ++|++|+|++|++... +....+
T Consensus 218 ~l~~~l~~L~~L~Ls~N~l~-~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l 293 (310)
T 4glp_A 218 ALAAAGVQPHSLDLSHNSLR-ATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRA-PQPDEL 293 (310)
T ss_dssp HHHHHTCCCSSEECTTSCCC-CCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSC-CCTTSC
T ss_pred HHHhcCCCCCEEECCCCCCC-ccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCC-chhhhC
Confidence 1234455555555555552 2224444433 455555555555555554442 4555555555555321 113344
Q ss_pred cccCCchhhhc
Q 037483 562 KCIDSLKLLVN 572 (693)
Q Consensus 562 ~~l~~l~~~~n 572 (693)
++|..|++.+|
T Consensus 294 ~~L~~L~L~~N 304 (310)
T 4glp_A 294 PEVDNLTLDGN 304 (310)
T ss_dssp CCCSCEECSST
T ss_pred CCccEEECcCC
Confidence 44444444444
No 71
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.75 E-value=8.4e-18 Score=167.51 Aligned_cols=178 Identities=19% Similarity=0.185 Sum_probs=147.4
Q ss_pred ccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCC-cCCCCCCCEEecCCCCCCccCCCCCCCCccc
Q 037483 333 SLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLS-IELLTGLELLNLNDCKNLLRLPSSIDGCFKL 411 (693)
Q Consensus 333 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L 411 (693)
.+..+++|++|++++|.+.+ + ..+..+++|++|++++|.++.++.. +..+++|++|++++|.+.+..+
T Consensus 58 ~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------- 126 (272)
T 3rfs_A 58 GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD--------- 126 (272)
T ss_dssp TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT---------
T ss_pred ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCH---------
Confidence 57789999999999988654 3 4788999999999999999987765 6899999999999996543332
Q ss_pred ccccccccCCCCccEEecCCCccccCCCc-cccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCC
Q 037483 412 ENVSETLGQVEILEELDISGTTIREPPSS-IFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGL 490 (693)
Q Consensus 412 ~~lp~~l~~l~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 490 (693)
..++.+++|++|++++|.++.+|.. +..+++|++|++++|.+....+. .+..+
T Consensus 127 ----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------------------~~~~l 180 (272)
T 3rfs_A 127 ----GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG----------------------VFDKL 180 (272)
T ss_dssp ----TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----------------------TTTTC
T ss_pred ----HHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH----------------------HhcCC
Confidence 2357788999999999999988654 68899999999999988765432 57889
Q ss_pred CcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCccccCCCCCCEEecccccceee
Q 037483 491 CSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPASISGLLNLKELELEDCALKLR 554 (693)
Q Consensus 491 ~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~ 554 (693)
++|+.|++++|.++ +..+..+..+++|++|++++|.+. +.+++|+.|+++.|.+...
T Consensus 181 ~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ 237 (272)
T 3rfs_A 181 TQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGV 237 (272)
T ss_dssp TTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGG
T ss_pred ccCCEEECCCCcCC-ccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCc
Confidence 99999999999994 455566899999999999999765 3466899999999987543
No 72
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.75 E-value=8.8e-18 Score=181.30 Aligned_cols=121 Identities=22% Similarity=0.259 Sum_probs=77.0
Q ss_pred cCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCccccc
Q 037483 334 LSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLEN 413 (693)
Q Consensus 334 l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~ 413 (693)
+.++++|++|++++|.+.+..+ +.++++|++|++++|.++.++. +..+++|++|++++|.+.. ++ .+.++++|+.
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~ 160 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQ 160 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSE
T ss_pred hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCC-Ch-hhccCCcccE
Confidence 5666777777777765544333 6677777777777777776654 6677777777777765443 22 2444444443
Q ss_pred cc--------ccccCCCCccEEecCCCccccCCCccccCCCCCEEEccCCCCCCC
Q 037483 414 VS--------ETLGQVEILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPS 460 (693)
Q Consensus 414 lp--------~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~ 460 (693)
+. ..++++++|++|++++|.++.++ .+..+++|++|++++|.+...
T Consensus 161 L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~ 214 (466)
T 1o6v_A 161 LSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDI 214 (466)
T ss_dssp EEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCC
T ss_pred eecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCccccc
Confidence 21 23667777777777777777664 466777777777777766554
No 73
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.75 E-value=2e-17 Score=183.00 Aligned_cols=86 Identities=17% Similarity=0.194 Sum_probs=70.4
Q ss_pred CCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccC---ccccCCCCCCEEecccccce--eeccCccccc
Q 037483 488 SGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLP---ASISGLLNLKELELEDCALK--LRKSDCTIIK 562 (693)
Q Consensus 488 ~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp---~~l~~l~~L~~L~L~~n~~~--~~~~~~~~l~ 562 (693)
..+++|++|++++|.+ .+.+|..++.+++|++|++++|.++.++ ..+..+++|++|++++|++. +....+..+.
T Consensus 350 ~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVF-TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp SSCCCCCEEECCSSCC-CTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred cCCCCceEEECCCCcc-ccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 6778999999999999 4567888999999999999999999655 56889999999999999985 3334467777
Q ss_pred ccCCchhhhcch
Q 037483 563 CIDSLKLLVNNG 574 (693)
Q Consensus 563 ~l~~l~~~~n~~ 574 (693)
+|..+++.+|..
T Consensus 429 ~L~~L~l~~n~l 440 (562)
T 3a79_B 429 SILVLNLSSNML 440 (562)
T ss_dssp TCCEEECCSSCC
T ss_pred cCCEEECCCCCC
Confidence 888887776643
No 74
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.75 E-value=4.8e-18 Score=188.78 Aligned_cols=217 Identities=22% Similarity=0.226 Sum_probs=139.5
Q ss_pred ccccccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccC--CCCCC
Q 037483 329 SLLISLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRL--PSSID 406 (693)
Q Consensus 329 ~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~l--p~~~~ 406 (693)
.+|..+..+ +|++|++++|... .+|. ..+++|++|++++|.+...... ..+++|++|++++|.+.+.. |..+.
T Consensus 296 ~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~ 370 (570)
T 2z63_A 296 RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDF 370 (570)
T ss_dssp SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHH
T ss_pred hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCcccccccccc
Confidence 344445555 6666666666543 3333 3455566666666555432221 45556666666665443321 22222
Q ss_pred CCcccc----------cccccccCCCCccEEecCCCccccCC--CccccCCCCCEEEccCCCCCCCCCCccccccccccC
Q 037483 407 GCFKLE----------NVSETLGQVEILEELDISGTTIREPP--SSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMG 474 (693)
Q Consensus 407 ~~~~L~----------~lp~~l~~l~~L~~L~l~~n~i~~lp--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 474 (693)
++++|+ .+|..+..+++|++|++++|.+...+ ..+..+++|++|++++|.+....+.
T Consensus 371 ~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------- 439 (570)
T 2z63_A 371 GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG----------- 439 (570)
T ss_dssp TCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTT-----------
T ss_pred ccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchh-----------
Confidence 233322 33444677778888888888777653 3567778888888888766544332
Q ss_pred CCCchhhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCccc-CccccCCCCCCEEeccccccee
Q 037483 475 KSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTL-PASISGLLNLKELELEDCALKL 553 (693)
Q Consensus 475 ~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~~~~ 553 (693)
.+.++++|+.|++++|.++++.+|..+..+++|++|++++|.++.+ |..+..+++|++|++++|++..
T Consensus 440 -----------~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 508 (570)
T 2z63_A 440 -----------IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS 508 (570)
T ss_dssp -----------TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred -----------hhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCC
Confidence 5777888899999988885456788888888999999999888866 6788888889999999888743
Q ss_pred ec-cCcccccccCCchhhhc
Q 037483 554 RK-SDCTIIKCIDSLKLLVN 572 (693)
Q Consensus 554 ~~-~~~~~l~~l~~l~~~~n 572 (693)
.. ..+..+++|..+++.+|
T Consensus 509 ~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 509 VPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp CCTTTTTTCTTCCEEECCSS
T ss_pred CCHHHhhcccCCcEEEecCC
Confidence 33 33456666666766665
No 75
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.75 E-value=3e-17 Score=175.71 Aligned_cols=201 Identities=17% Similarity=0.138 Sum_probs=125.2
Q ss_pred ccccccccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCC
Q 037483 327 LSSLLISLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSID 406 (693)
Q Consensus 327 L~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~ 406 (693)
++.+| .+..+++|++|++++|.+.+ +| ++.+++|++|++++|.++.++ +..+++|++|++++|.+.+ +|
T Consensus 54 l~~~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~-l~---- 122 (457)
T 3bz5_A 54 ITDMT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTK-LD---- 122 (457)
T ss_dssp CCCCT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSC-CC----
T ss_pred cccCh-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCe-ec----
Confidence 33443 45666777777777765444 23 566677777777777766654 6667777777777764433 22
Q ss_pred CCcccccccccccCCCCccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCCccc--cccccccCCCCchhhhhh
Q 037483 407 GCFKLENVSETLGQVEILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSASWHL--HFPFNLMGKSLYPVALML 484 (693)
Q Consensus 407 ~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 484 (693)
++.+++|++|++++|.+++++ +..+++|++|++++|......+.... .....+....+.. .
T Consensus 123 -----------~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~---l- 185 (457)
T 3bz5_A 123 -----------VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE---L- 185 (457)
T ss_dssp -----------CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC---C-
T ss_pred -----------CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce---e-
Confidence 455666666666666666653 55666666666666643322211000 0000111111111 1
Q ss_pred cccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCccccCCCCCCEEeccccccee-eccCccccc
Q 037483 485 FSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPASISGLLNLKELELEDCALKL-RKSDCTIIK 562 (693)
Q Consensus 485 ~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~-~~~~~~~l~ 562 (693)
.+..+++|+.|++++|.++. + .++.+++|++|++++|+++.+| +..+++|+.|++++|++.. ....++.++
T Consensus 186 -~l~~l~~L~~L~l~~N~l~~--~--~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~ 257 (457)
T 3bz5_A 186 -DVSQNKLLNRLNCDTNNITK--L--DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLT 257 (457)
T ss_dssp -CCTTCTTCCEEECCSSCCSC--C--CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCC
T ss_pred -ccccCCCCCEEECcCCcCCe--e--ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcCHHHCCCCC
Confidence 36778899999999999854 3 3788999999999999999988 8889999999999999843 333444444
No 76
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.75 E-value=5.1e-17 Score=159.74 Aligned_cols=186 Identities=20% Similarity=0.227 Sum_probs=149.0
Q ss_pred cccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCcccccccccccCCCCccEEecCCCccccCC-Cc
Q 037483 362 EDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLENVSETLGQVEILEELDISGTTIREPP-SS 440 (693)
Q Consensus 362 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~lp-~~ 440 (693)
...++++++++.++.+|..+. ++|+.|++++|.+.+..+. .++++++|++|++++|.++.++ ..
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~-------------~~~~l~~L~~L~L~~n~l~~~~~~~ 78 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDA-------------TFRGLTKLTWLNLDYNQLQTLSAGV 78 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTT-------------TTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHh-------------HhcCcccCCEEECCCCcCCccCHhH
Confidence 467899999999999998765 6899999999976554433 3577889999999999999885 45
Q ss_pred cccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCE
Q 037483 441 IFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKE 520 (693)
Q Consensus 441 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~ 520 (693)
+..+++|++|++++|.+....+. .+..+++|+.|++++|.++ +..+..+..+++|++
T Consensus 79 ~~~l~~L~~L~L~~n~l~~~~~~----------------------~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~ 135 (251)
T 3m19_A 79 FDDLTELGTLGLANNQLASLPLG----------------------VFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKE 135 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTT----------------------TTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred hccCCcCCEEECCCCcccccChh----------------------HhcccCCCCEEEcCCCcCC-CcChhHhccCCcccE
Confidence 78999999999999988765432 5788899999999999994 333445789999999
Q ss_pred EeCCCCCCcccCc-cccCCCCCCEEecccccceeec-cCcccccccCCchhhhcch----hhhHHHHHHHH
Q 037483 521 LYLSKNNFVTLPA-SISGLLNLKELELEDCALKLRK-SDCTIIKCIDSLKLLVNNG----LAISMLQEYLE 585 (693)
Q Consensus 521 L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n~~~~~~-~~~~~l~~l~~l~~~~n~~----~~~~~~~~~~~ 585 (693)
|+|++|.++.+|. .+..+++|++|+|++|++.... .....+.+|..+++.+|.. +...++..|+.
T Consensus 136 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~ 206 (251)
T 3m19_A 136 LRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIR 206 (251)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHH
T ss_pred EECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHH
Confidence 9999999998886 6899999999999999985333 3456677788888877733 33345555665
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.74 E-value=6.7e-18 Score=164.86 Aligned_cols=184 Identities=17% Similarity=0.185 Sum_probs=147.8
Q ss_pred Ccccccc-ccCCCCCCcEEEcCCCC-CcccchhhhcCccccceeccCC-cCceeecC-CcCCCCCCCEEecCCCCCCccC
Q 037483 326 NLSSLLI-SLSSLKCLRTLELSGCS-KLKRFLEIVASMEDLSELYLDG-TFITKLPL-SIELLTGLELLNLNDCKNLLRL 401 (693)
Q Consensus 326 ~L~~l~~-~l~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~L~~-~~l~~l~~-~~~~l~~L~~L~L~~~~~~~~l 401 (693)
+++.++. .+.++++|++|++++|. +....+..+.++++|++|++++ |.++.++. .+..+++|++|++++|.+.+ +
T Consensus 42 ~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-l 120 (239)
T 2xwt_C 42 HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-F 120 (239)
T ss_dssp CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-C
T ss_pred cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-c
Confidence 4566665 68899999999999997 5444555789999999999998 99998875 57899999999999986443 4
Q ss_pred CCCCCCCcccccccccccCCCCcc---EEecCCC-ccccCCC-ccccCCCCC-EEEccCCCCCCCCCCccccccccccCC
Q 037483 402 PSSIDGCFKLENVSETLGQVEILE---ELDISGT-TIREPPS-SIFAIKNLK-KLSFSGCSGPPSSASWHLHFPFNLMGK 475 (693)
Q Consensus 402 p~~~~~~~~L~~lp~~l~~l~~L~---~L~l~~n-~i~~lp~-~~~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~ 475 (693)
|. ++.+++|+ +|++++| .++.+|. .+..+++|+ .|++++|.+....+.
T Consensus 121 p~--------------~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~------------ 174 (239)
T 2xwt_C 121 PD--------------LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGY------------ 174 (239)
T ss_dssp CC--------------CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTT------------
T ss_pred cc--------------cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHh------------
Confidence 43 45555666 9999999 9998865 488999999 999999987643221
Q ss_pred CCchhhhhhcccCCCCcCCeeeCCCCC-CCCCCCCccCCCC-CCCCEEeCCCCCCcccCccccCCCCCCEEeccccc
Q 037483 476 SLYPVALMLFSLSGLCSLSKLDLSYCG-LGEGAIPNDIGNL-CSLKELYLSKNNFVTLPASISGLLNLKELELEDCA 550 (693)
Q Consensus 476 ~~~~~~~~~~~l~~l~~L~~L~ls~n~-l~~~~~p~~l~~l-~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~ 550 (693)
.+.. ++|+.|++++|. ++ ...+..+..+ ++|++|++++|.++.+|.. .+++|+.|++++|.
T Consensus 175 ----------~~~~-~~L~~L~L~~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 175 ----------AFNG-TKLDAVYLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp ----------TTTT-CEEEEEECTTCTTCC-EECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred ----------hcCC-CCCCEEEcCCCCCcc-cCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence 3444 799999999995 84 3334668889 9999999999999999865 78899999999874
No 78
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.74 E-value=3.4e-17 Score=189.69 Aligned_cols=245 Identities=22% Similarity=0.191 Sum_probs=179.4
Q ss_pred cCccccccccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcC-ceee-cCCcCCCCCCCEEecCCCCCCccCC
Q 037483 325 KNLSSLLISLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTF-ITKL-PLSIELLTGLELLNLNDCKNLLRLP 402 (693)
Q Consensus 325 ~~L~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~l-~~~~~~l~~L~~L~L~~~~~~~~lp 402 (693)
.+++.+|. -.++|++|+|++|.+.+..+..+.++++|++|+|++|. +..+ |..+.++++|++|+|++|.+.+..|
T Consensus 14 ~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p 90 (844)
T 3j0a_A 14 CNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP 90 (844)
T ss_dssp CCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT
T ss_pred CCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH
Confidence 36777775 45799999999999888888899999999999999994 4577 6779999999999999999998899
Q ss_pred CCCCCCcccccc-----------ccc--ccCCCCccEEecCCCccccC--CCccccCCCCCEEEccCCCCCCCCCCcccc
Q 037483 403 SSIDGCFKLENV-----------SET--LGQVEILEELDISGTTIREP--PSSIFAIKNLKKLSFSGCSGPPSSASWHLH 467 (693)
Q Consensus 403 ~~~~~~~~L~~l-----------p~~--l~~l~~L~~L~l~~n~i~~l--p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 467 (693)
..+.++++|+.+ |.. ++++++|++|++++|.++++ +..+.++++|++|++++|.+....+.....
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence 999999888754 333 88999999999999999877 357899999999999999886653321100
Q ss_pred ----------cc--------------------------ccccCCCC----ch-hh-------------------------
Q 037483 468 ----------FP--------------------------FNLMGKSL----YP-VA------------------------- 481 (693)
Q Consensus 468 ----------~~--------------------------~~~~~~~~----~~-~~------------------------- 481 (693)
.. ..+....+ +. ..
T Consensus 171 l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~ 250 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250 (844)
T ss_dssp HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCS
T ss_pred ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccc
Confidence 00 00000000 00 00
Q ss_pred ----hhhcccCC--CCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCccc-CccccCCCCCCEEecccccce-e
Q 037483 482 ----LMLFSLSG--LCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTL-PASISGLLNLKELELEDCALK-L 553 (693)
Q Consensus 482 ----~~~~~l~~--l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~~~-~ 553 (693)
.....+.+ .++|+.|++++|.++ +..|..+..+++|+.|+|++|.++.+ |..+..+++|++|+|++|.+. .
T Consensus 251 ~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 329 (844)
T 3j0a_A 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL 329 (844)
T ss_dssp SSTTGGGTTTTTTTTSCCCEEECTTCCCC-EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCC
T ss_pred ccCCCChhhhhccccCCccEEECCCCccc-ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCcc
Confidence 00001112 257888888888873 44567788888899999998888865 467888889999999998873 2
Q ss_pred eccCcccccccCCchhhhcc
Q 037483 554 RKSDCTIIKCIDSLKLLVNN 573 (693)
Q Consensus 554 ~~~~~~~l~~l~~l~~~~n~ 573 (693)
....+..+.+|..|++..|.
T Consensus 330 ~~~~~~~l~~L~~L~L~~N~ 349 (844)
T 3j0a_A 330 YSSNFYGLPKVAYIDLQKNH 349 (844)
T ss_dssp CSCSCSSCTTCCEEECCSCC
T ss_pred CHHHhcCCCCCCEEECCCCC
Confidence 34455666667777666553
No 79
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.74 E-value=2.2e-17 Score=178.21 Aligned_cols=204 Identities=20% Similarity=0.283 Sum_probs=125.4
Q ss_pred ccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCcccc
Q 037483 333 SLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLE 412 (693)
Q Consensus 333 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~ 412 (693)
.+.++++|++|++++|.... ++ .+..+++|++|++++|.++.+++ +..+++|+.|++++|.+... + .+..+++|+
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~ 246 (466)
T 1o6v_A 172 PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI-G-TLASLTNLT 246 (466)
T ss_dssp GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC-G-GGGGCTTCS
T ss_pred hhccCCCCCEEECcCCcCCC-Ch-hhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc-h-hhhcCCCCC
Confidence 36677788888888776433 32 36677788888888887776654 66777888888887754331 1 122222222
Q ss_pred c----------ccccccCCCCccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhh
Q 037483 413 N----------VSETLGQVEILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVAL 482 (693)
Q Consensus 413 ~----------lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (693)
. ++. +..+++|++|++++|.++.++. +..+++|+.|++++|.+....
T Consensus 247 ~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~--------------------- 303 (466)
T 1o6v_A 247 DLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDIS--------------------- 303 (466)
T ss_dssp EEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCG---------------------
T ss_pred EEECCCCccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCch---------------------
Confidence 1 111 4455556666666665555543 555566666666655543321
Q ss_pred hhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCccccCCCCCCEEecccccceeeccCccccc
Q 037483 483 MLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPASISGLLNLKELELEDCALKLRKSDCTIIK 562 (693)
Q Consensus 483 ~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~ 562 (693)
.+..+++|+.|++++|.++. ++. +..+++|++|++++|.++.++ .+..+++|+.|++++|++..... ...+.
T Consensus 304 ---~~~~l~~L~~L~L~~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~ 375 (466)
T 1o6v_A 304 ---PISNLKNLTYLTLYFNNISD--ISP-VSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTP-LANLT 375 (466)
T ss_dssp ---GGGGCTTCSEEECCSSCCSC--CGG-GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCGG-GTTCT
T ss_pred ---hhcCCCCCCEEECcCCcCCC--chh-hccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCccCccch-hhcCC
Confidence 35667778888888887743 222 667778888888888777764 67777888888888887743332 44455
Q ss_pred ccCCchhhhc
Q 037483 563 CIDSLKLLVN 572 (693)
Q Consensus 563 ~l~~l~~~~n 572 (693)
.|..+.+..|
T Consensus 376 ~L~~L~l~~n 385 (466)
T 1o6v_A 376 RITQLGLNDQ 385 (466)
T ss_dssp TCCEEECCCE
T ss_pred CCCEEeccCC
Confidence 5555555444
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.73 E-value=1.3e-17 Score=166.81 Aligned_cols=198 Identities=20% Similarity=0.164 Sum_probs=128.3
Q ss_pred cccchhhhcCccccceeccCCcCceeecC-CcCCCCCCCEEecCCCCCCccCCCCCCCCcccccc-----------cccc
Q 037483 351 LKRFLEIVASMEDLSELYLDGTFITKLPL-SIELLTGLELLNLNDCKNLLRLPSSIDGCFKLENV-----------SETL 418 (693)
Q Consensus 351 ~~~~~~~~~~l~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~l-----------p~~l 418 (693)
...+|..+. ++|++|++++|.++.++. .+..+++|++|++++|.+.+..+..+.++++|+.+ +..+
T Consensus 19 l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (276)
T 2z62_A 19 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 96 (276)
T ss_dssp CSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred ccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhh
Confidence 344555443 579999999999998876 68999999999999997766555556555555432 2345
Q ss_pred cCCCCccEEecCCCccccCCC-ccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCeee
Q 037483 419 GQVEILEELDISGTTIREPPS-SIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLD 497 (693)
Q Consensus 419 ~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 497 (693)
.++++|++|++++|.+..++. .+..+++|++|++++|.+.... .+..+.++++|+.|+
T Consensus 97 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------------------l~~~~~~l~~L~~L~ 155 (276)
T 2z62_A 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK---------------------LPEYFSNLTNLEHLD 155 (276)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC---------------------CCGGGGGCTTCCEEE
T ss_pred cCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceec---------------------CchhhccCCCCCEEE
Confidence 556666666666666665533 4556666666666666554321 011566667777777
Q ss_pred CCCCCCCCCCCCccCCCCCCCC----EEeCCCCCCcccCccccCCCCCCEEecccccceeecc-CcccccccCCchhhhc
Q 037483 498 LSYCGLGEGAIPNDIGNLCSLK----ELYLSKNNFVTLPASISGLLNLKELELEDCALKLRKS-DCTIIKCIDSLKLLVN 572 (693)
Q Consensus 498 ls~n~l~~~~~p~~l~~l~~L~----~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~~-~~~~l~~l~~l~~~~n 572 (693)
+++|.++ +..+..+..+++|+ +|++++|.++.++.......+|+.|++++|.+..... .+..+.+|..+++.+|
T Consensus 156 Ls~N~l~-~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 156 LSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CCSSCCC-EECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred CCCCCCC-cCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence 7777773 22334555555555 6777777777776555555678888888888743332 2355666677766665
No 81
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=2.2e-17 Score=181.88 Aligned_cols=173 Identities=23% Similarity=0.316 Sum_probs=145.7
Q ss_pred ccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCcccc
Q 037483 333 SLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLE 412 (693)
Q Consensus 333 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~ 412 (693)
.+..+++|+.|++++|.+. .++ .+..+++|+.|+|++|.++.++. +..+++|+.|+|++|.+..
T Consensus 38 ~~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~------------- 101 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD------------- 101 (605)
T ss_dssp CHHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC-------------
T ss_pred chhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCC-------------
Confidence 3466788999999988754 344 57889999999999999998876 8899999999999985432
Q ss_pred cccccccCCCCccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCc
Q 037483 413 NVSETLGQVEILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCS 492 (693)
Q Consensus 413 ~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 492 (693)
+| .+..+++|++|+|++|.+..++ .+..+++|+.|+|++|.+.... .+..+++
T Consensus 102 -l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~------------------------~l~~l~~ 154 (605)
T 1m9s_A 102 -LS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDIT------------------------VLSRLTK 154 (605)
T ss_dssp -CT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCCG------------------------GGGSCTT
T ss_pred -Ch-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCCch------------------------hhcccCC
Confidence 22 3678899999999999999874 6889999999999999876541 6788999
Q ss_pred CCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCccccCCCCCCEEecccccce
Q 037483 493 LSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPASISGLLNLKELELEDCALK 552 (693)
Q Consensus 493 L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~ 552 (693)
|+.|+|++|.++. ++. +..+++|+.|+|++|.++.+| .+..+++|+.|+|++|++.
T Consensus 155 L~~L~Ls~N~l~~--~~~-l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 155 LDTLSLEDNQISD--IVP-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CSEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEE
T ss_pred CCEEECcCCcCCC--chh-hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCc
Confidence 9999999999943 443 889999999999999999886 6899999999999999883
No 82
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.72 E-value=8.4e-18 Score=185.86 Aligned_cols=190 Identities=21% Similarity=0.215 Sum_probs=155.4
Q ss_pred CccccccccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeec-CCcCCCCCCCEEecCCCCCCccCCCC
Q 037483 326 NLSSLLISLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLP-LSIELLTGLELLNLNDCKNLLRLPSS 404 (693)
Q Consensus 326 ~L~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~L~~~~~~~~lp~~ 404 (693)
.++.+|..+. ++|++|++++|.+.+..|..+.++++|++|++++|.++.++ ..+..+++|++|++++|.+.+..
T Consensus 16 ~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--- 90 (549)
T 2z81_A 16 SFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS--- 90 (549)
T ss_dssp CCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCC---
T ss_pred ccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccC---
Confidence 5677776553 79999999999887777888999999999999999999776 56899999999999999543322
Q ss_pred CCCCcccccccccccCCCCccEEecCCCccccC--CCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhh
Q 037483 405 IDGCFKLENVSETLGQVEILEELDISGTTIREP--PSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVAL 482 (693)
Q Consensus 405 ~~~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~l--p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (693)
|..++++++|++|++++|.++.+ |..+.++++|++|++++|......+.
T Consensus 91 ----------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~------------------- 141 (549)
T 2z81_A 91 ----------SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR------------------- 141 (549)
T ss_dssp ----------HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT-------------------
T ss_pred ----------HHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCH-------------------
Confidence 23478899999999999999854 67889999999999999874333221
Q ss_pred hhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCccc-cCCCCCCEEecccccce
Q 037483 483 MLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPASI-SGLLNLKELELEDCALK 552 (693)
Q Consensus 483 ~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l-~~l~~L~~L~L~~n~~~ 552 (693)
..+.++++|++|++++|.+ .+..|..++.+++|++|++++|.+..+|..+ ..+++|++|++++|++.
T Consensus 142 --~~~~~l~~L~~L~L~~n~l-~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 209 (549)
T 2z81_A 142 --IDFAGLTSLNELEIKALSL-RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLA 209 (549)
T ss_dssp --TTTTTCCEEEEEEEEETTC-CEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCT
T ss_pred --hhhhcccccCeeeccCCcc-cccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccc
Confidence 1578889999999999998 4567888999999999999999888777554 56889999999999874
No 83
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.71 E-value=2.3e-16 Score=168.66 Aligned_cols=208 Identities=20% Similarity=0.189 Sum_probs=127.7
Q ss_pred CccccccccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCC
Q 037483 326 NLSSLLISLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSI 405 (693)
Q Consensus 326 ~L~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~ 405 (693)
+++.+| .+.++++|++|++++|.+.+ +|.. ..+|++|++++|.++.+| .+..+++|++|++++|.+.+ +|...
T Consensus 142 ~l~~lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~~ 214 (454)
T 1jl5_A 142 QLEKLP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDLP 214 (454)
T ss_dssp CCSSCC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCCC
T ss_pred CCCCCc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCCc
Confidence 455566 57888888888888876543 5543 347888888888888877 57888888888888887654 44322
Q ss_pred CCC-------cccccccccccCCCCccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCc
Q 037483 406 DGC-------FKLENVSETLGQVEILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLY 478 (693)
Q Consensus 406 ~~~-------~~L~~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (693)
..+ ..+..+|. ++.+++|++|++++|.++++|.. +++|+.|++++|.+..............+....+.
T Consensus 215 ~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~ 290 (454)
T 1jl5_A 215 LSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFS 290 (454)
T ss_dssp TTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS
T ss_pred CcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccccCcccCcCCEEECcCCccC
Confidence 111 13345663 77888888888888888877653 36777777777766553221100000011110000
Q ss_pred hhhhh-------------hcccCCC-CcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCccccCCCCCCEE
Q 037483 479 PVALM-------------LFSLSGL-CSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPASISGLLNLKEL 544 (693)
Q Consensus 479 ~~~~~-------------~~~l~~l-~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L 544 (693)
..... ...+..+ ++|+.|++++|.++. +|.. +++|++|++++|.++.+|. .+++|++|
T Consensus 291 ~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~--lp~~---~~~L~~L~L~~N~l~~lp~---~l~~L~~L 362 (454)
T 1jl5_A 291 GLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE--LPAL---PPRLERLIASFNHLAEVPE---LPQNLKQL 362 (454)
T ss_dssp EESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC--CCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEE
T ss_pred cccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc--cccc---CCcCCEEECCCCccccccc---hhhhccEE
Confidence 00000 0012223 467777777777743 5543 4677888888888777776 46778888
Q ss_pred ecccccce
Q 037483 545 ELEDCALK 552 (693)
Q Consensus 545 ~L~~n~~~ 552 (693)
++++|++.
T Consensus 363 ~L~~N~l~ 370 (454)
T 1jl5_A 363 HVEYNPLR 370 (454)
T ss_dssp ECCSSCCS
T ss_pred ECCCCCCC
Confidence 88888774
No 84
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.71 E-value=4e-17 Score=174.56 Aligned_cols=130 Identities=18% Similarity=0.109 Sum_probs=64.8
Q ss_pred cCccccccccCCCCCCcEEEcCCCCCcccchhhhcCcccc-------------ceeccCCcCceeecCCcCCCCCCCEEe
Q 037483 325 KNLSSLLISLSSLKCLRTLELSGCSKLKRFLEIVASMEDL-------------SELYLDGTFITKLPLSIELLTGLELLN 391 (693)
Q Consensus 325 ~~L~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L-------------~~L~L~~~~l~~l~~~~~~l~~L~~L~ 391 (693)
.++..+|..++++++|++|++++|...+.+|..++.+.+| ++|++++|.++.+|.. .++|++|+
T Consensus 21 n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~---~~~L~~L~ 97 (454)
T 1jl5_A 21 SNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL---PPHLESLV 97 (454)
T ss_dssp -------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC---CTTCSEEE
T ss_pred CchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC---cCCCCEEE
Confidence 3455666666777777777777666666666666665553 6666666666665542 35666666
Q ss_pred cCCCCCCccCCCCCCCCccccccc---ccccCC-CCccEEecCCCccccCCCccccCCCCCEEEccCCCCCC
Q 037483 392 LNDCKNLLRLPSSIDGCFKLENVS---ETLGQV-EILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPP 459 (693)
Q Consensus 392 L~~~~~~~~lp~~~~~~~~L~~lp---~~l~~l-~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~ 459 (693)
+++|.+.+ +|..+.++..|.--. ..+..+ ++|++|++++|.++++| .+..+++|++|++++|.+..
T Consensus 98 l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~ 167 (454)
T 1jl5_A 98 ASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKK 167 (454)
T ss_dssp CCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSC
T ss_pred ccCCcCCc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcc
Confidence 66665544 454332111111000 001111 46666666666666666 46666666666666666554
No 85
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=2e-17 Score=163.53 Aligned_cols=168 Identities=20% Similarity=0.210 Sum_probs=125.3
Q ss_pred CCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCcccccccc
Q 037483 337 LKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLENVSE 416 (693)
Q Consensus 337 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~lp~ 416 (693)
+.++..++++++... .++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.+ ..++.
T Consensus 18 l~~l~~l~l~~~~i~-~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i--------------~~~~~ 80 (263)
T 1xeu_A 18 LANAVKQNLGKQSVT-DLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQI--------------SDLSP 80 (263)
T ss_dssp HHHHHHHHHTCSCTT-SEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCC--------------CCCGG
T ss_pred HHHHHHHHhcCCCcc-ccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCcc--------------CCChh
Confidence 334555566665433 233 4566778888888888888776 577788888888888743 23333
Q ss_pred cccCCCCccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCee
Q 037483 417 TLGQVEILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKL 496 (693)
Q Consensus 417 ~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 496 (693)
+.++++|++|++++|.++.+|.... ++|++|++++|.+.... .+..+++|+.|
T Consensus 81 -l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~------------------------~l~~l~~L~~L 133 (263)
T 1xeu_A 81 -LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNELRDTD------------------------SLIHLKNLEIL 133 (263)
T ss_dssp -GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCCSBSG------------------------GGTTCTTCCEE
T ss_pred -hccCCCCCEEECCCCccCCcCcccc--CcccEEEccCCccCCCh------------------------hhcCcccccEE
Confidence 6777888888888888888765433 88888888888765431 57788889999
Q ss_pred eCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCccccCCCCCCEEecccccce
Q 037483 497 DLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPASISGLLNLKELELEDCALK 552 (693)
Q Consensus 497 ~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~ 552 (693)
++++|.++. ++ .+..+++|++|++++|.++.+ ..+..+++|+.|++++|++.
T Consensus 134 ~Ls~N~i~~--~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 134 SIRNNKLKS--IV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp ECTTSCCCB--CG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEE
T ss_pred ECCCCcCCC--Ch-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCccc
Confidence 999998854 54 678889999999999999887 57888999999999999873
No 86
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.70 E-value=3.5e-16 Score=150.12 Aligned_cols=150 Identities=17% Similarity=0.189 Sum_probs=121.4
Q ss_pred ceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCcccccccccccCCCCccEEecCCCccccCCC-cccc
Q 037483 365 SELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLENVSETLGQVEILEELDISGTTIREPPS-SIFA 443 (693)
Q Consensus 365 ~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~lp~-~~~~ 443 (693)
+.+++++|.++.+|..+. ..+++|+|++|.+.+..|. ..+..+++|++|++++|.++.++. .+..
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~------------~~~~~l~~L~~L~L~~N~i~~i~~~~~~~ 79 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEAT------------GIFKKLPQLRKINFSNNKITDIEEGAFEG 79 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCC------------CCGGGCTTCCEEECCSSCCCEECTTTTTT
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCch------------hhhccCCCCCEEECCCCcCCEECHHHhCC
Confidence 578888888888876553 4568888888855443332 236778889999999999988854 7888
Q ss_pred CCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeC
Q 037483 444 IKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYL 523 (693)
Q Consensus 444 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L 523 (693)
+++|++|++++|.+....+. .+.++++|+.|++++|.++ +..|..+..+++|++|+|
T Consensus 80 l~~L~~L~Ls~N~l~~~~~~----------------------~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L 136 (220)
T 2v70_A 80 ASGVNEILLTSNRLENVQHK----------------------MFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSL 136 (220)
T ss_dssp CTTCCEEECCSSCCCCCCGG----------------------GGTTCSSCCEEECTTSCCC-CBCTTSSTTCTTCSEEEC
T ss_pred CCCCCEEECCCCccCccCHh----------------------HhcCCcCCCEEECCCCcCC-eECHhHcCCCccCCEEEC
Confidence 99999999999987665432 5788899999999999994 555788999999999999
Q ss_pred CCCCCccc-CccccCCCCCCEEecccccc
Q 037483 524 SKNNFVTL-PASISGLLNLKELELEDCAL 551 (693)
Q Consensus 524 ~~n~l~~l-p~~l~~l~~L~~L~L~~n~~ 551 (693)
++|.++.+ |..+..+++|+.|+|++|++
T Consensus 137 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 137 YDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp TTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 99999977 67899999999999999987
No 87
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=2.6e-17 Score=155.31 Aligned_cols=150 Identities=23% Similarity=0.311 Sum_probs=98.6
Q ss_pred CccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCcccccccccccCCCCccEEecCCCcccc-CC
Q 037483 360 SMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLENVSETLGQVEILEELDISGTTIRE-PP 438 (693)
Q Consensus 360 ~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~-lp 438 (693)
.+++|++|++++|.++.+| .+..+++|++|++++|.. . .+ ..+..+++|++|++++|.++. .|
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~-~-------------~~-~~l~~l~~L~~L~l~~n~l~~~~~ 105 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHA-T-------------NY-NPISGLSNLERLRIMGKDVTSDKI 105 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCC-S-------------CC-GGGTTCTTCCEEEEECTTCBGGGS
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCC-C-------------cc-hhhhcCCCCCEEEeECCccCcccC
Confidence 3455666666666666555 466666666666666621 1 11 134556667777777777764 35
Q ss_pred CccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCeeeCCCCC-CCCCCCCccCCCCCC
Q 037483 439 SSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCG-LGEGAIPNDIGNLCS 517 (693)
Q Consensus 439 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~-l~~~~~p~~l~~l~~ 517 (693)
..+..+++|++|++++|.+.... +..+..+++|+.|++++|. +++ +| .+..+++
T Consensus 106 ~~l~~l~~L~~L~Ls~n~i~~~~----------------------~~~l~~l~~L~~L~L~~n~~i~~--~~-~l~~l~~ 160 (197)
T 4ezg_A 106 PNLSGLTSLTLLDISHSAHDDSI----------------------LTKINTLPKVNSIDLSYNGAITD--IM-PLKTLPE 160 (197)
T ss_dssp CCCTTCTTCCEEECCSSBCBGGG----------------------HHHHTTCSSCCEEECCSCTBCCC--CG-GGGGCSS
T ss_pred hhhcCCCCCCEEEecCCccCcHh----------------------HHHHhhCCCCCEEEccCCCCccc--cH-hhcCCCC
Confidence 66677777777777777654321 1156677788888888887 633 55 5777888
Q ss_pred CCEEeCCCCCCcccCccccCCCCCCEEecccccc
Q 037483 518 LKELYLSKNNFVTLPASISGLLNLKELELEDCAL 551 (693)
Q Consensus 518 L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~ 551 (693)
|++|++++|.++.++ .+..+++|++|++++|++
T Consensus 161 L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 161 LKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CCEEECTTBCCCCCT-TGGGCSSCCEEEECBC--
T ss_pred CCEEECCCCCCcChH-HhccCCCCCEEEeeCccc
Confidence 888888888888777 778888888888888875
No 88
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=8.2e-17 Score=161.75 Aligned_cols=170 Identities=21% Similarity=0.266 Sum_probs=142.3
Q ss_pred hcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCcccccccccccCCCCccEEecCCCccccC
Q 037483 358 VASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLENVSETLGQVEILEELDISGTTIREP 437 (693)
Q Consensus 358 ~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~l 437 (693)
+..+++|++|++++|.++.++. +..+++|++|++++|.+. .++. +.++++|++|++++|.++.+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~--------------~~~~-l~~l~~L~~L~l~~n~l~~~ 105 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLT--------------DIKP-LANLKNLGWLFLDENKVKDL 105 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCC--------------CCGG-GTTCTTCCEEECCSSCCCCG
T ss_pred hhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccC--------------CCcc-cccCCCCCEEECCCCcCCCC
Confidence 4568899999999999998864 889999999999998543 3333 68889999999999999987
Q ss_pred CCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCC
Q 037483 438 PSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCS 517 (693)
Q Consensus 438 p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~ 517 (693)
| .+..+++|++|++++|.+.... .+..+++|+.|++++|.++. + ..+..+++
T Consensus 106 ~-~l~~l~~L~~L~L~~n~i~~~~------------------------~l~~l~~L~~L~l~~n~l~~--~-~~l~~l~~ 157 (291)
T 1h6t_A 106 S-SLKDLKKLKSLSLEHNGISDIN------------------------GLVHLPQLESLYLGNNKITD--I-TVLSRLTK 157 (291)
T ss_dssp G-GGTTCTTCCEEECTTSCCCCCG------------------------GGGGCTTCCEEECCSSCCCC--C-GGGGGCTT
T ss_pred h-hhccCCCCCEEECCCCcCCCCh------------------------hhcCCCCCCEEEccCCcCCc--c-hhhccCCC
Confidence 6 4899999999999999876531 57788999999999999954 4 57889999
Q ss_pred CCEEeCCCCCCcccCccccCCCCCCEEecccccceeeccCcccccccCCchhhhcc
Q 037483 518 LKELYLSKNNFVTLPASISGLLNLKELELEDCALKLRKSDCTIIKCIDSLKLLVNN 573 (693)
Q Consensus 518 L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~l~~l~~~~n~ 573 (693)
|++|++++|.++.++. +..+++|+.|++++|.+... .....+++|..|++.+|.
T Consensus 158 L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l-~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 158 LDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQE 211 (291)
T ss_dssp CSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEEEEEEE
T ss_pred CCEEEccCCccccchh-hcCCCccCEEECCCCcCCCC-hhhccCCCCCEEECcCCc
Confidence 9999999999998875 99999999999999998543 335666677777776663
No 89
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.69 E-value=2.9e-16 Score=170.96 Aligned_cols=166 Identities=22% Similarity=0.213 Sum_probs=112.9
Q ss_pred CccccccccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCC
Q 037483 326 NLSSLLISLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSI 405 (693)
Q Consensus 326 ~L~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~ 405 (693)
+++.+|..+ +++|++|++++|.+. .+| ..+++|++|++++|.++.+|. +.. +|++|++++|.+.+
T Consensus 70 ~L~~lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~------ 134 (571)
T 3cvr_A 70 NLSSLPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTM------ 134 (571)
T ss_dssp CCSCCCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSC------
T ss_pred CCCccCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCC------
Confidence 355555544 367777777776654 455 346777777777777777766 544 77777777774332
Q ss_pred CCCcccccccccccCCCCccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhc
Q 037483 406 DGCFKLENVSETLGQVEILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLF 485 (693)
Q Consensus 406 ~~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (693)
+|. .+++|++|++++|.++.+|. .+++|++|++++|.+....
T Consensus 135 --------lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp------------------------ 176 (571)
T 3cvr_A 135 --------LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLP------------------------ 176 (571)
T ss_dssp --------CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCC------------------------
T ss_pred --------CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcc------------------------
Confidence 222 35677888888888877766 5677888888887765431
Q ss_pred ccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCC-------CEEeCCCCCCcccCccccCCCCCCEEecccccc
Q 037483 486 SLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSL-------KELYLSKNNFVTLPASISGLLNLKELELEDCAL 551 (693)
Q Consensus 486 ~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L-------~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~ 551 (693)
.+. ++|+.|++++|.++ .+|. +.. +| +.|+|++|.|+.+|..+..+++|+.|+|++|++
T Consensus 177 ~l~--~~L~~L~Ls~N~L~--~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 177 ELP--ESLEALDVSTNLLE--SLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp CCC--TTCCEEECCSSCCS--SCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred hhh--CCCCEEECcCCCCC--chhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcC
Confidence 122 67888888888874 4666 543 66 888888888888887777788888888888877
No 90
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.69 E-value=7.3e-16 Score=147.87 Aligned_cols=149 Identities=20% Similarity=0.268 Sum_probs=115.2
Q ss_pred ceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCcccccccccccCCCCccEEecCCCccccC-CCcccc
Q 037483 365 SELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLENVSETLGQVEILEELDISGTTIREP-PSSIFA 443 (693)
Q Consensus 365 ~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~l-p~~~~~ 443 (693)
+.++++++.++.+|..+. ++|+.|++++|.+.+..+ ..+..+++|++|++++|.++.+ |..+..
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~-------------~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~ 78 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPP-------------GAFSPYKKLRRIDLSNNQISELAPDAFQG 78 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECT-------------TSSTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCH-------------hHhhCCCCCCEEECCCCcCCCcCHHHhhC
Confidence 466777777777776554 578888888775433222 2356677788888888888876 667888
Q ss_pred CCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeC
Q 037483 444 IKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYL 523 (693)
Q Consensus 444 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L 523 (693)
+++|++|++++|.+....+. .+.++++|+.|+|++|.++ +..|..+..+++|++|+|
T Consensus 79 l~~L~~L~Ls~N~l~~l~~~----------------------~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L 135 (220)
T 2v9t_B 79 LRSLNSLVLYGNKITELPKS----------------------LFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSL 135 (220)
T ss_dssp CSSCCEEECCSSCCCCCCTT----------------------TTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CcCCCEEECCCCcCCccCHh----------------------HccCCCCCCEEECCCCCCC-EeCHHHcCCCCCCCEEEC
Confidence 88888888888877655332 4678889999999999983 455778999999999999
Q ss_pred CCCCCcccCc-cccCCCCCCEEecccccc
Q 037483 524 SKNNFVTLPA-SISGLLNLKELELEDCAL 551 (693)
Q Consensus 524 ~~n~l~~lp~-~l~~l~~L~~L~L~~n~~ 551 (693)
++|.++.++. .+..+++|+.|+|++|++
T Consensus 136 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 136 YDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 9999998874 588899999999999987
No 91
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.68 E-value=5.9e-16 Score=160.95 Aligned_cols=255 Identities=16% Similarity=0.156 Sum_probs=162.6
Q ss_pred CCCccCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEcc-----------
Q 037483 10 PVKSETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDE----------- 78 (693)
Q Consensus 10 ~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~----------- 78 (693)
+.++..+..|+||++++++|.+ +.. +++.|+|++|+|||+|+++++++.... .+|+...
T Consensus 6 ~~~~~~~~~~~gR~~el~~L~~-l~~------~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 6 TSPKDNRKDFFDREKEIEKLKG-LRA------PITLVLGLRRTGKSSIIKIGINELNLP---YIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SSCCCSGGGSCCCHHHHHHHHH-TCS------SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEEGGGGTTCSCCCHH
T ss_pred CCCCCCHHHhcChHHHHHHHHH-hcC------CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEEchhhccccCCCHH
Confidence 5566677889999999999999 753 589999999999999999999876432 2333211
Q ss_pred ---------------------------------------------c-----------CCCCCeEEEEEecCCChhh----
Q 037483 79 ---------------------------------------------V-----------GCNTKKVLLVIDDVVDIKQ---- 98 (693)
Q Consensus 79 ---------------------------------------------~-----------~~~~~~~LlvlDdv~~~~~---- 98 (693)
. ....++++||+||++..+.
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~ 155 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGV 155 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTC
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCch
Confidence 0 0111489999999977532
Q ss_pred -hhHHhcCCCcCCCCceEEEEeCChHHHHHc-----------CC-CceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHH
Q 037483 99 -LEYLVGKREWFGSGSRIIITSRDEHLLKTH-----------GV-DELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKL 165 (693)
Q Consensus 99 -~~~l~~~~~~~~~~~~iliTtR~~~~~~~~-----------~~-~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~ 165 (693)
+..+........++.++|+|+|........ +. ...+++.+|+.+|+.+++...+.......+.
T Consensus 156 ~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~---- 231 (357)
T 2fna_A 156 NLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD---- 231 (357)
T ss_dssp CCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----
T ss_pred hHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----
Confidence 222222111112478899999987543211 11 2578999999999999998754211111111
Q ss_pred HHHHHHHhCCCchhHHHHhhhhcC-CChHHHHHH-HHHhccCCCchHHHHHHHhh---ccCcHhhHhHHhhhhcccCCCC
Q 037483 166 SERVPQYAGGLPLALKVLGSFLNG-RSTDQWRST-LERLKRDPPNKIMSILQISF---DGLQDSEKKIFLDVACFFKWKS 240 (693)
Q Consensus 166 ~~~i~~~~~g~Plal~~~~~~l~~-~~~~~w~~~-l~~l~~~~~~~~~~~l~~s~---~~L~~~~~~~~~~la~f~~~~~ 240 (693)
...|++.++|+|+++..++..+.. .+...|... .+.. ...+...+.-.+ ..+++..+.++..+|+ . . +
T Consensus 232 ~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g-~-~ 304 (357)
T 2fna_A 232 YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYA----KKLILKEFENFLHGREIARKRYLNIMRTLSK-C-G-K 304 (357)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHH----HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-C-B-C
T ss_pred HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHH----HHHHHHHHHHHhhccccccHHHHHHHHHHHc-C-C-C
Confidence 167999999999999999876542 233333221 1110 011111122111 1688999999999998 3 3 5
Q ss_pred HHHHHHHHH-HcC--CC---ccchhhhhhcCCcEEEeCCCcEe-hhHHHHHHH
Q 037483 241 REYVTKILE-ACG--FS---PVIGIEVLIEKSLLIVDEDNRLQ-MHDLLQELG 286 (693)
Q Consensus 241 ~~~l~~~~~-~~~--~~---~~~~l~~L~~~sLi~~~~~~~~~-~H~lv~~~~ 286 (693)
...+.+... ..| .. ....++.|.+.++|.... +.|+ .|++++++.
T Consensus 305 ~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~l 356 (357)
T 2fna_A 305 WSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHhh
Confidence 555554432 234 22 245689999999998874 5565 689998764
No 92
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.68 E-value=1e-15 Score=168.88 Aligned_cols=192 Identities=22% Similarity=0.171 Sum_probs=126.7
Q ss_pred CCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCcc-----
Q 037483 336 SLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFK----- 410 (693)
Q Consensus 336 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~----- 410 (693)
.+++|++|++++|.+.+ +|. .+++|+.|++++|.++.+|.. +++|++|++++|.+.+ +|..+.++..
T Consensus 99 ~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~ 170 (622)
T 3g06_A 99 LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPALPSELCKLWAYN 170 (622)
T ss_dssp CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCS
T ss_pred CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCC-cCCccCCCCEEECCC
Confidence 34556666666554332 332 345666666666666666543 3677777777775543 4443322222
Q ss_pred --cccccccccCCCCccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccC
Q 037483 411 --LENVSETLGQVEILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLS 488 (693)
Q Consensus 411 --L~~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 488 (693)
+..+| ..+++|+.|++++|.++.+|.. +++|+.|++++|.+............+.+....+.. ++ .
T Consensus 171 N~l~~l~---~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~---lp---~ 238 (622)
T 3g06_A 171 NQLTSLP---MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS---LP---V 238 (622)
T ss_dssp SCCSCCC---CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC---CC---C
T ss_pred CCCCCCc---ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCCCCCCCCEEEccCCccCc---CC---C
Confidence 23344 3458899999999999988764 478888888888776543321111111111111111 11 4
Q ss_pred CCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCccccCCCCCCEEecccccce
Q 037483 489 GLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPASISGLLNLKELELEDCALK 552 (693)
Q Consensus 489 ~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~ 552 (693)
.+++|+.|++++|.++. +|. .+++|+.|+|++|.++.+|..+.++++|+.|+|++|++.
T Consensus 239 ~l~~L~~L~Ls~N~L~~--lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 239 LPSELKELMVSGNRLTS--LPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp CCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred CCCcCcEEECCCCCCCc--CCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCC
Confidence 56899999999999954 776 678999999999999999999999999999999999983
No 93
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.68 E-value=3.2e-16 Score=170.63 Aligned_cols=177 Identities=19% Similarity=0.158 Sum_probs=143.0
Q ss_pred CCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCcccccccccc
Q 037483 339 CLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLENVSETL 418 (693)
Q Consensus 339 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~lp~~l 418 (693)
+|+.|++++|.+.+ +|..+ +++|++|+|++|.++.+| ..+++|++|++++|.+.+ +|. +
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~--------------l 118 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPE--------------L 118 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC--------------C
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cch--------------h
Confidence 79999999987655 66655 378999999999999998 557999999999996544 443 2
Q ss_pred cCCCCccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCeeeC
Q 037483 419 GQVEILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDL 498 (693)
Q Consensus 419 ~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 498 (693)
.+ +|++|++++|.++++|. .+++|+.|++++|.+.... . .+++|+.|++
T Consensus 119 ~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp------------------------~--~l~~L~~L~L 167 (571)
T 3cvr_A 119 PA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTMLP------------------------E--LPTSLEVLSV 167 (571)
T ss_dssp CT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCC------------------------C--CCTTCCEEEC
T ss_pred hc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCcCC------------------------C--cCCCcCEEEC
Confidence 33 89999999999999987 7899999999999876531 1 4579999999
Q ss_pred CCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCccccCCCCC-------CEEecccccceeeccCcccccccCCchhhh
Q 037483 499 SYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPASISGLLNL-------KELELEDCALKLRKSDCTIIKCIDSLKLLV 571 (693)
Q Consensus 499 s~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L-------~~L~L~~n~~~~~~~~~~~l~~l~~l~~~~ 571 (693)
++|.++. +|. +. ++|+.|+|++|.|+.+|. +.. +| +.|+|++|++...+.....+.+|..|++.+
T Consensus 168 s~N~L~~--lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~ 239 (571)
T 3cvr_A 168 RNNQLTF--LPE-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILED 239 (571)
T ss_dssp CSSCCSC--CCC-CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCS
T ss_pred CCCCCCC--cch-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeC
Confidence 9999954 887 65 899999999999999997 654 77 999999999965555455677788888877
Q ss_pred cchh
Q 037483 572 NNGL 575 (693)
Q Consensus 572 n~~~ 575 (693)
|...
T Consensus 240 N~l~ 243 (571)
T 3cvr_A 240 NPLS 243 (571)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 7554
No 94
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.68 E-value=5.5e-16 Score=160.75 Aligned_cols=255 Identities=12% Similarity=0.130 Sum_probs=163.1
Q ss_pred CCCccCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEcc-----------
Q 037483 10 PVKSETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDE----------- 78 (693)
Q Consensus 10 ~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~----------- 78 (693)
+.++..+..|+||++++++|.+++..+ +++.|+|++|+|||+|+++++++.. .+|+...
T Consensus 5 ~~~~~~~~~~~gR~~el~~L~~~l~~~-----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 74 (350)
T 2qen_A 5 LRPKTRREDIFDREEESRKLEESLENY-----PLTLLLGIRRVGKSSLLRAFLNERP-----GILIDCRELYAERGHITR 74 (350)
T ss_dssp CSCCCSGGGSCSCHHHHHHHHHHHHHC-----SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEEHHHHHHTTTCBCH
T ss_pred CCCCCChHhcCChHHHHHHHHHHHhcC-----CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEEeecccccccCCCH
Confidence 456667788999999999999998752 6899999999999999999987631 2333210
Q ss_pred ------------------------------------cC-----------CC-CCeEEEEEecCCChhh---------hhH
Q 037483 79 ------------------------------------VG-----------CN-TKKVLLVIDDVVDIKQ---------LEY 101 (693)
Q Consensus 79 ------------------------------------~~-----------~~-~~~~LlvlDdv~~~~~---------~~~ 101 (693)
.. .. .+++++|+||++.... +..
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 00 00 1389999999987542 222
Q ss_pred HhcCCCcCCCCceEEEEeCChHHHHHc------------CCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHH
Q 037483 102 LVGKREWFGSGSRIIITSRDEHLLKTH------------GVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERV 169 (693)
Q Consensus 102 l~~~~~~~~~~~~iliTtR~~~~~~~~------------~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i 169 (693)
+..... ..++.++|+|++........ .....+++.+|+.+|+.+++........... ..+.+..+
T Consensus 155 L~~~~~-~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~--~~~~~~~i 231 (350)
T 2qen_A 155 FAYAYD-SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV--PENEIEEA 231 (350)
T ss_dssp HHHHHH-HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC--CHHHHHHH
T ss_pred HHHHHH-hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHH
Confidence 221111 12578899999886542211 1124789999999999999987542111111 12356789
Q ss_pred HHHhCCCchhHHHHhhhhcC-CChHHHHHHHHHhccCCCchHHHHHHHhhccC---cHhhHhHHhhhhcccCCCCHHHHH
Q 037483 170 PQYAGGLPLALKVLGSFLNG-RSTDQWRSTLERLKRDPPNKIMSILQISFDGL---QDSEKKIFLDVACFFKWKSREYVT 245 (693)
Q Consensus 170 ~~~~~g~Plal~~~~~~l~~-~~~~~w~~~l~~l~~~~~~~~~~~l~~s~~~L---~~~~~~~~~~la~f~~~~~~~~l~ 245 (693)
++.++|+|+++..++..+.. .+...+. ..+. +.+...+...+..+ ++..+.++..+|+ ...+...+.
T Consensus 232 ~~~tgG~P~~l~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l~ 302 (350)
T 2qen_A 232 VELLDGIPGWLVVFGVEYLRNGDFGRAM---KRTL----EVAKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSLIR 302 (350)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCHHHHH---HHHH----HHHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHhccccHhHHH---HHHH----HHHHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHHHH
Confidence 99999999999999875432 2222221 1111 11112222223333 6888999999998 234556665
Q ss_pred HHHHHc--CCC---ccchhhhhhcCCcEEEeCCCcEe-hhHHHHHHHH
Q 037483 246 KILEAC--GFS---PVIGIEVLIEKSLLIVDEDNRLQ-MHDLLQELGH 287 (693)
Q Consensus 246 ~~~~~~--~~~---~~~~l~~L~~~sLi~~~~~~~~~-~H~lv~~~~~ 287 (693)
..+... +.. ....++.|.+.++|... ++.|+ .|++++++.+
T Consensus 303 ~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 303 DYLAVKGTKIPEPRLYALLENLKKMNWIVEE-DNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHHHT
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHHHc
Confidence 554332 222 23558999999999987 45565 5899988754
No 95
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.67 E-value=8.6e-16 Score=148.45 Aligned_cols=150 Identities=19% Similarity=0.223 Sum_probs=124.7
Q ss_pred ccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCcccccccccccCCCCccEEecCCCccccCCC-cc
Q 037483 363 DLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLENVSETLGQVEILEELDISGTTIREPPS-SI 441 (693)
Q Consensus 363 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~lp~-~~ 441 (693)
..+.++.+++.++.+|..+. ++|++|+|++|.+.+..|. .+.++++|++|++++|.++.+|. .+
T Consensus 20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~-------------~~~~l~~L~~L~L~~N~l~~i~~~~~ 84 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPG-------------VFDSLINLKELYLGSNQLGALPVGVF 84 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTT-------------TTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHH-------------HhhCccCCcEEECCCCCCCCcChhhc
Confidence 35678888888888887654 7899999999866554443 35677889999999999998864 46
Q ss_pred ccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEE
Q 037483 442 FAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKEL 521 (693)
Q Consensus 442 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L 521 (693)
..+++|++|++++|.+....+. .+..+++|+.|++++|.++ .+|..+..+++|++|
T Consensus 85 ~~l~~L~~L~Ls~N~l~~l~~~----------------------~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L 140 (229)
T 3e6j_A 85 DSLTQLTVLDLGTNQLTVLPSA----------------------VFDRLVHLKELFMCCNKLT--ELPRGIERLTHLTHL 140 (229)
T ss_dssp TTCTTCCEEECCSSCCCCCCTT----------------------TTTTCTTCCEEECCSSCCC--SCCTTGGGCTTCSEE
T ss_pred ccCCCcCEEECCCCcCCccChh----------------------HhCcchhhCeEeccCCccc--ccCcccccCCCCCEE
Confidence 7899999999999988765432 5778899999999999995 589999999999999
Q ss_pred eCCCCCCcccC-ccccCCCCCCEEecccccc
Q 037483 522 YLSKNNFVTLP-ASISGLLNLKELELEDCAL 551 (693)
Q Consensus 522 ~L~~n~l~~lp-~~l~~l~~L~~L~L~~n~~ 551 (693)
+|++|.++.+| ..+..+++|+.|++++|++
T Consensus 141 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 141 ALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred ECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 99999999887 4578899999999999987
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.67 E-value=4.7e-18 Score=178.81 Aligned_cols=167 Identities=16% Similarity=0.138 Sum_probs=84.4
Q ss_pred cCccccceeccCCcCcee-----ecCCcCCCCCCCEEecCCCCCCccCCCCCCCCcccccccccccCC---------CCc
Q 037483 359 ASMEDLSELYLDGTFITK-----LPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLENVSETLGQV---------EIL 424 (693)
Q Consensus 359 ~~l~~L~~L~L~~~~l~~-----l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~lp~~l~~l---------~~L 424 (693)
..+++|++|+|++|.++. +|..+..+++|++|+|++|.+....+ ..++..+..+ ++|
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~---------~~l~~~l~~l~~~~~~~~~~~L 161 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG---------AKIARALQELAVNKKAKNAPPL 161 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH---------HHHHHHHHHHHHHHHHHTCCCC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHH---------HHHHHHHHHHhhhhhcccCCCC
Confidence 445555555555555543 34444555555555555553321110 1112222223 556
Q ss_pred cEEecCCCccc--cCC---CccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhc-ccCCCCcCCeeeC
Q 037483 425 EELDISGTTIR--EPP---SSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLF-SLSGLCSLSKLDL 498 (693)
Q Consensus 425 ~~L~l~~n~i~--~lp---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l 498 (693)
++|++++|.++ .+| ..+..+++|++|++++|.+... ....... .+..+++|+.|+|
T Consensus 162 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~------------------g~~~l~~~~l~~~~~L~~L~L 223 (386)
T 2ca6_A 162 RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE------------------GIEHLLLEGLAYCQELKVLDL 223 (386)
T ss_dssp CEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHH------------------HHHHHHHTTGGGCTTCCEEEC
T ss_pred cEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHh------------------HHHHHHHHHhhcCCCccEEEC
Confidence 66666666654 222 2444556666666666644311 0001111 4555666666666
Q ss_pred CCCCCCC---CCCCccCCCCCCCCEEeCCCCCCcc-----cCcccc--CCCCCCEEecccccce
Q 037483 499 SYCGLGE---GAIPNDIGNLCSLKELYLSKNNFVT-----LPASIS--GLLNLKELELEDCALK 552 (693)
Q Consensus 499 s~n~l~~---~~~p~~l~~l~~L~~L~L~~n~l~~-----lp~~l~--~l~~L~~L~L~~n~~~ 552 (693)
++|.+++ ..+|..+..+++|++|+|++|.++. +|..+. .+++|++|+|++|.+.
T Consensus 224 s~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~ 287 (386)
T 2ca6_A 224 QDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287 (386)
T ss_dssp CSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred cCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence 6666621 2345556666666666666666652 344552 2666666666666663
No 97
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.66 E-value=1.1e-16 Score=162.65 Aligned_cols=206 Identities=17% Similarity=0.093 Sum_probs=151.1
Q ss_pred CCCcEEEcCCCCCcccc-hh--hhcCccccceeccCCcCce-eecCCc--CCCCCCCEEecCCCCCCccCCCCCCCCccc
Q 037483 338 KCLRTLELSGCSKLKRF-LE--IVASMEDLSELYLDGTFIT-KLPLSI--ELLTGLELLNLNDCKNLLRLPSSIDGCFKL 411 (693)
Q Consensus 338 ~~L~~L~l~~~~~~~~~-~~--~~~~l~~L~~L~L~~~~l~-~l~~~~--~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L 411 (693)
..++.|.+.++...... .. .+..+++|++|++++|.++ ..|..+ ..+++|++|++++|.+.+..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~-------- 135 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSW-------- 135 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSS--------
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhh--------
Confidence 35788888887654321 11 1223567999999999998 556666 8899999999999977654331
Q ss_pred cccc-ccccCCCCccEEecCCCccccCC-CccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCC
Q 037483 412 ENVS-ETLGQVEILEELDISGTTIREPP-SSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSG 489 (693)
Q Consensus 412 ~~lp-~~l~~l~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 489 (693)
++ ..+..+++|++|++++|.+..++ ..+..+++|++|++++|.+..... ......+..
T Consensus 136 --~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------------------~~~~~~~~~ 195 (310)
T 4glp_A 136 --LAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERG------------------LMAALCPHK 195 (310)
T ss_dssp --HHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHH------------------HHTTSCTTS
T ss_pred --hHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchh------------------hhHHHhhhc
Confidence 11 22456889999999999999885 678899999999999998643100 000013467
Q ss_pred CCcCCeeeCCCCCCCCCCCCc----cCCCCCCCCEEeCCCCCCccc-CccccCC---CCCCEEecccccceeeccCcccc
Q 037483 490 LCSLSKLDLSYCGLGEGAIPN----DIGNLCSLKELYLSKNNFVTL-PASISGL---LNLKELELEDCALKLRKSDCTII 561 (693)
Q Consensus 490 l~~L~~L~ls~n~l~~~~~p~----~l~~l~~L~~L~L~~n~l~~l-p~~l~~l---~~L~~L~L~~n~~~~~~~~~~~l 561 (693)
+++|++|++++|.++. ++. .++.+++|++|+|++|.++.+ |..+..+ ++|++|+|++|+++...... .
T Consensus 196 l~~L~~L~Ls~N~l~~--l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~--~ 271 (310)
T 4glp_A 196 FPAIQNLALRNTGMET--PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL--P 271 (310)
T ss_dssp SCCCCSCBCCSSCCCC--HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC--C
T ss_pred CCCCCEEECCCCCCCc--hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh--c
Confidence 8999999999999943 444 256789999999999999966 7777776 69999999999996333222 2
Q ss_pred cccCCchhhhcchh
Q 037483 562 KCIDSLKLLVNNGL 575 (693)
Q Consensus 562 ~~l~~l~~~~n~~~ 575 (693)
++|..|++..|...
T Consensus 272 ~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 272 AKLRVLDLSSNRLN 285 (310)
T ss_dssp SCCSCEECCSCCCC
T ss_pred CCCCEEECCCCcCC
Confidence 67788888777554
No 98
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.66 E-value=9.7e-16 Score=172.49 Aligned_cols=218 Identities=22% Similarity=0.174 Sum_probs=150.0
Q ss_pred CCCCCCcEEEcCCCCCcc--cchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCcccc
Q 037483 335 SSLKCLRTLELSGCSKLK--RFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLE 412 (693)
Q Consensus 335 ~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~ 412 (693)
..+++|+.|++++|.... ..+..+..+.+|++|++..+.+..++..+..+++|+.+++++|......+.
T Consensus 368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~--------- 438 (635)
T 4g8a_A 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF--------- 438 (635)
T ss_dssp CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSS---------
T ss_pred ccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccc---------
Confidence 345566666666654422 233444555666666666666665555566666666666666543333222
Q ss_pred cccccccCCCCccEEecCCCccccC-CCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCC
Q 037483 413 NVSETLGQVEILEELDISGTTIREP-PSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLC 491 (693)
Q Consensus 413 ~lp~~l~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 491 (693)
..+..+++++.+++++|.+... +..+..+++|+.|++++|...... .+..+..++
T Consensus 439 ---~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~---------------------~~~~~~~l~ 494 (635)
T 4g8a_A 439 ---SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF---------------------LPDIFTELR 494 (635)
T ss_dssp ---CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE---------------------ECSCCTTCT
T ss_pred ---cccccccccccccccccccccccccccccchhhhhhhhhhccccccc---------------------Cchhhhhcc
Confidence 2356778888999999888866 556777888999999888543211 111678888
Q ss_pred cCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccC-ccccCCCCCCEEecccccceee-ccCcccc-cccCCch
Q 037483 492 SLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLP-ASISGLLNLKELELEDCALKLR-KSDCTII-KCIDSLK 568 (693)
Q Consensus 492 ~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~n~~~~~-~~~~~~l-~~l~~l~ 568 (693)
+|+.|+|++|.+ .+..|..|+++++|++|+|++|+++.++ ..+..+++|++|+|++|++... ...+..+ .+|..++
T Consensus 495 ~L~~L~Ls~N~L-~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~ 573 (635)
T 4g8a_A 495 NLTFLDLSQCQL-EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 573 (635)
T ss_dssp TCCEEECTTSCC-CEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEE
T ss_pred ccCEEECCCCcc-CCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEE
Confidence 999999999998 4556778899999999999999999775 5678899999999999998433 3344444 5677777
Q ss_pred hhhc---chhhhHHHHHHHHH
Q 037483 569 LLVN---NGLAISMLQEYLEA 586 (693)
Q Consensus 569 ~~~n---~~~~~~~~~~~~~~ 586 (693)
+.+| |.+...++..|++.
T Consensus 574 L~~Np~~C~C~~~~~~~wl~~ 594 (635)
T 4g8a_A 574 LTQNDFACTCEHQSFLQWIKD 594 (635)
T ss_dssp CTTCCBCCSGGGHHHHHHHHH
T ss_pred eeCCCCcccCCcHHHHHHHHh
Confidence 7766 66666778888864
No 99
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.66 E-value=1.6e-17 Score=174.74 Aligned_cols=193 Identities=18% Similarity=0.187 Sum_probs=150.5
Q ss_pred ccCCCCCCcEEEcCCCCCcc----cchhhhcCccccceeccCCcCcee-----ecCCcCCC---------CCCCEEecCC
Q 037483 333 SLSSLKCLRTLELSGCSKLK----RFLEIVASMEDLSELYLDGTFITK-----LPLSIELL---------TGLELLNLND 394 (693)
Q Consensus 333 ~l~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~L~~~~l~~-----l~~~~~~l---------~~L~~L~L~~ 394 (693)
.+.++++|++|+|++|.+.. .++..+..+++|++|+|++|.++. ++..+..+ ++|++|++++
T Consensus 89 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~ 168 (386)
T 2ca6_A 89 ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR 168 (386)
T ss_dssp HHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred HHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC
Confidence 34788999999999998776 477788999999999999999873 33334444 8999999999
Q ss_pred CCCCccCCCCCCCCcccccccccccCCCCccEEecCCCccc--c----CCCccccCCCCCEEEccCCCCCCCCCCccccc
Q 037483 395 CKNLLRLPSSIDGCFKLENVSETLGQVEILEELDISGTTIR--E----PPSSIFAIKNLKKLSFSGCSGPPSSASWHLHF 468 (693)
Q Consensus 395 ~~~~~~lp~~~~~~~~L~~lp~~l~~l~~L~~L~l~~n~i~--~----lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 468 (693)
|.+... .+..+...+..+++|++|++++|.++ + .|..+..+++|++|++++|.+...
T Consensus 169 n~l~~~---------~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~-------- 231 (386)
T 2ca6_A 169 NRLENG---------SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL-------- 231 (386)
T ss_dssp SCCTGG---------GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH--------
T ss_pred CCCCcH---------HHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcH--------
Confidence 965421 12233356778899999999999998 2 344788999999999999975321
Q ss_pred cccccCCCCchhhhhhcccCCCCcCCeeeCCCCCCCCC---CCCccC--CCCCCCCEEeCCCCCCcc-----cCccc-cC
Q 037483 469 PFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEG---AIPNDI--GNLCSLKELYLSKNNFVT-----LPASI-SG 537 (693)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~---~~p~~l--~~l~~L~~L~L~~n~l~~-----lp~~l-~~ 537 (693)
....++..+..+++|+.|+|++|.++.. .++..+ +.+++|++|+|++|.++. +|..+ .+
T Consensus 232 ----------g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~ 301 (386)
T 2ca6_A 232 ----------GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK 301 (386)
T ss_dssp ----------HHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhc
Confidence 1123334678889999999999998431 135555 458999999999999996 88887 66
Q ss_pred CCCCCEEecccccce
Q 037483 538 LLNLKELELEDCALK 552 (693)
Q Consensus 538 l~~L~~L~L~~n~~~ 552 (693)
+++|++|++++|++.
T Consensus 302 l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 302 MPDLLFLELNGNRFS 316 (386)
T ss_dssp CTTCCEEECTTSBSC
T ss_pred CCCceEEEccCCcCC
Confidence 899999999999984
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.66 E-value=3.9e-16 Score=171.97 Aligned_cols=170 Identities=22% Similarity=0.274 Sum_probs=143.0
Q ss_pred hcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCcccccccccccCCCCccEEecCCCccccC
Q 037483 358 VASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLENVSETLGQVEILEELDISGTTIREP 437 (693)
Q Consensus 358 ~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~l 437 (693)
+..+++|+.|++++|.+..++ .+..+++|+.|+|++|.+. .++. +..+++|+.|+|++|.+..+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~--------------~~~~-l~~l~~L~~L~Ls~N~l~~l 102 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLT--------------DIKP-LTNLKNLGWLFLDENKIKDL 102 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCC--------------CCGG-GGGCTTCCEEECCSSCCCCC
T ss_pred hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCC--------------CChh-hccCCCCCEEECcCCCCCCC
Confidence 457889999999999999887 5899999999999999543 2333 68899999999999999987
Q ss_pred CCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCC
Q 037483 438 PSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCS 517 (693)
Q Consensus 438 p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~ 517 (693)
| .+..+++|+.|+|++|.+.... .+..+++|+.|+|++|.++. + ..+..+++
T Consensus 103 ~-~l~~l~~L~~L~Ls~N~l~~l~------------------------~l~~l~~L~~L~Ls~N~l~~--l-~~l~~l~~ 154 (605)
T 1m9s_A 103 S-SLKDLKKLKSLSLEHNGISDIN------------------------GLVHLPQLESLYLGNNKITD--I-TVLSRLTK 154 (605)
T ss_dssp T-TSTTCTTCCEEECTTSCCCCCG------------------------GGGGCTTCSEEECCSSCCCC--C-GGGGSCTT
T ss_pred h-hhccCCCCCEEEecCCCCCCCc------------------------cccCCCccCEEECCCCccCC--c-hhhcccCC
Confidence 6 7899999999999999876531 57788999999999999954 4 67889999
Q ss_pred CCEEeCCCCCCcccCccccCCCCCCEEecccccceeeccCcccccccCCchhhhcc
Q 037483 518 LKELYLSKNNFVTLPASISGLLNLKELELEDCALKLRKSDCTIIKCIDSLKLLVNN 573 (693)
Q Consensus 518 L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~l~~l~~~~n~ 573 (693)
|+.|+|++|.++.++. +..+++|+.|+|++|++... ..+..+.+|..|++..|.
T Consensus 155 L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 155 LDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEECCSEE
T ss_pred CCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC-hHHccCCCCCEEEccCCc
Confidence 9999999999998875 99999999999999998543 345566667777666653
No 101
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.65 E-value=7.2e-17 Score=166.36 Aligned_cols=189 Identities=20% Similarity=0.204 Sum_probs=144.8
Q ss_pred cccccccCCCCCCcEEEcCCCCCccc-chhhhcCccccceeccCCcCce-eecCCcCCCCCCCEEecCCCCCCccCCCCC
Q 037483 328 SSLLISLSSLKCLRTLELSGCSKLKR-FLEIVASMEDLSELYLDGTFIT-KLPLSIELLTGLELLNLNDCKNLLRLPSSI 405 (693)
Q Consensus 328 ~~l~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~L~~~~l~-~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~ 405 (693)
...+..+.++++|++|++++|.+... ++..+..+++|++|++++|.++ ..+..+..+++|++|++++|...+.
T Consensus 83 ~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~----- 157 (336)
T 2ast_B 83 DQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE----- 157 (336)
T ss_dssp CSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH-----
T ss_pred cccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCH-----
Confidence 33344566789999999999886554 7788899999999999999887 5666778899999999999832211
Q ss_pred CCCcccccccccccCCCCccEEecCCC-cccc--CCCccccCC-CCCEEEccCCC--CCCCCCCccccccccccCCCCch
Q 037483 406 DGCFKLENVSETLGQVEILEELDISGT-TIRE--PPSSIFAIK-NLKKLSFSGCS--GPPSSASWHLHFPFNLMGKSLYP 479 (693)
Q Consensus 406 ~~~~~L~~lp~~l~~l~~L~~L~l~~n-~i~~--lp~~~~~l~-~L~~L~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 479 (693)
..++..+.++++|++|++++| .++. ++..+..++ +|++|++++|. +..
T Consensus 158 ------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~-------------------- 211 (336)
T 2ast_B 158 ------FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK-------------------- 211 (336)
T ss_dssp ------HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH--------------------
T ss_pred ------HHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCH--------------------
Confidence 124455678899999999999 8884 567788899 99999999984 211
Q ss_pred hhhhhcccCCCCcCCeeeCCCCC-CCCCCCCccCCCCCCCCEEeCCCCC-Cc-ccCccccCCCCCCEEecccc
Q 037483 480 VALMLFSLSGLCSLSKLDLSYCG-LGEGAIPNDIGNLCSLKELYLSKNN-FV-TLPASISGLLNLKELELEDC 549 (693)
Q Consensus 480 ~~~~~~~l~~l~~L~~L~ls~n~-l~~~~~p~~l~~l~~L~~L~L~~n~-l~-~lp~~l~~l~~L~~L~L~~n 549 (693)
...+..+.++++|+.|++++|. + .+..+..+..+++|++|++++|. ++ .....+.++++|+.|++++|
T Consensus 212 -~~l~~~~~~~~~L~~L~l~~~~~l-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 212 -SDLSTLVRRCPNLVHLDLSDSVML-KNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp -HHHHHHHHHCTTCSEEECTTCTTC-CGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred -HHHHHHHhhCCCCCEEeCCCCCcC-CHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 1122256678999999999998 5 44566688889999999999995 33 11135788999999999999
No 102
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.64 E-value=3.6e-16 Score=154.43 Aligned_cols=168 Identities=18% Similarity=0.216 Sum_probs=140.1
Q ss_pred CccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCcccccccccccCCCCccEEecCCCccccCCC
Q 037483 360 SMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLENVSETLGQVEILEELDISGTTIREPPS 439 (693)
Q Consensus 360 ~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~lp~ 439 (693)
.+.++..++++++.++.++ .+..+++|++|++++|.+ ..+| .+..+++|++|++++|.+++++.
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i--------------~~l~-~l~~l~~L~~L~L~~N~i~~~~~ 80 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNI--------------QSLA-GMQFFTNLKELHLSHNQISDLSP 80 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCC--------------CCCT-TGGGCTTCCEEECCSSCCCCCGG
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCc--------------ccch-HHhhCCCCCEEECCCCccCCChh
Confidence 4678889999999999887 588999999999999843 3333 46788999999999999999976
Q ss_pred ccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCC
Q 037483 440 SIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLK 519 (693)
Q Consensus 440 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~ 519 (693)
+..+++|++|++++|.+.... .+.. ++|+.|++++|.++. ++ .+..+++|+
T Consensus 81 -l~~l~~L~~L~L~~N~l~~l~------------------------~~~~-~~L~~L~L~~N~l~~--~~-~l~~l~~L~ 131 (263)
T 1xeu_A 81 -LKDLTKLEELSVNRNRLKNLN------------------------GIPS-ACLSRLFLDNNELRD--TD-SLIHLKNLE 131 (263)
T ss_dssp -GTTCSSCCEEECCSSCCSCCT------------------------TCCC-SSCCEEECCSSCCSB--SG-GGTTCTTCC
T ss_pred -hccCCCCCEEECCCCccCCcC------------------------cccc-CcccEEEccCCccCC--Ch-hhcCccccc
Confidence 999999999999999877643 2233 899999999999954 54 689999999
Q ss_pred EEeCCCCCCcccCccccCCCCCCEEecccccceeeccCcccccccCCchhhhcch
Q 037483 520 ELYLSKNNFVTLPASISGLLNLKELELEDCALKLRKSDCTIIKCIDSLKLLVNNG 574 (693)
Q Consensus 520 ~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~l~~l~~~~n~~ 574 (693)
.|++++|+++.++ .+..+++|+.|++++|++... .....+.+|..+++.+|..
T Consensus 132 ~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 132 ILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp EEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEE
T ss_pred EEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcc
Confidence 9999999999987 789999999999999999644 5566677777777766643
No 103
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.64 E-value=9.6e-16 Score=172.53 Aligned_cols=188 Identities=20% Similarity=0.134 Sum_probs=144.5
Q ss_pred CccccccccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecC-CcCCCCCCCEEecCCCCCCccCCCC
Q 037483 326 NLSSLLISLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPL-SIELLTGLELLNLNDCKNLLRLPSS 404 (693)
Q Consensus 326 ~L~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~L~~~~~~~~lp~~ 404 (693)
+|+.+|..+. +++++|+|++|.+.+..+..|.++++|++|+|++|.|+.+++ .|.++++|++|+|++|+
T Consensus 42 ~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-------- 111 (635)
T 4g8a_A 42 NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-------- 111 (635)
T ss_dssp CCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC--------
T ss_pred CcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc--------
Confidence 5777775442 379999999998777667789999999999999999998865 57899999999999984
Q ss_pred CCCCccccccc-ccccCCCCccEEecCCCccccCCC-ccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhh
Q 037483 405 IDGCFKLENVS-ETLGQVEILEELDISGTTIREPPS-SIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVAL 482 (693)
Q Consensus 405 ~~~~~~L~~lp-~~l~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (693)
++.+| ..|.++++|++|++++|+++++|. .++++++|++|++++|.+......
T Consensus 112 ------l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~------------------- 166 (635)
T 4g8a_A 112 ------IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP------------------- 166 (635)
T ss_dssp ------CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCC-------------------
T ss_pred ------CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCc-------------------
Confidence 33444 347888999999999999998865 588999999999999987654211
Q ss_pred hhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCC----CEEeCCCCCCcccCccccCCCCCCEEecccccc
Q 037483 483 MLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSL----KELYLSKNNFVTLPASISGLLNLKELELEDCAL 551 (693)
Q Consensus 483 ~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L----~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~ 551 (693)
..+..+++|++|++++|.++ +..+..+..+.++ ..++++.|.++.++........+..|++.+|..
T Consensus 167 --~~~~~l~~L~~L~L~~N~l~-~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~ 236 (635)
T 4g8a_A 167 --EYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFD 236 (635)
T ss_dssp --GGGGGCTTCCEEECCSSCCC-EECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCS
T ss_pred --hhhccchhhhhhcccCcccc-ccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccc
Confidence 15677889999999999983 4445556555443 468889998887776655555666777776643
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.64 E-value=3.3e-16 Score=147.65 Aligned_cols=154 Identities=17% Similarity=0.202 Sum_probs=126.6
Q ss_pred ccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCcccc
Q 037483 333 SLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLE 412 (693)
Q Consensus 333 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~ 412 (693)
+...+++|++|++++|.+. .+| .+..+++|++|++++|.++.++ .+..+++|++|++++|.+.+..|.
T Consensus 39 ~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~--------- 106 (197)
T 4ezg_A 39 TEAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIP--------- 106 (197)
T ss_dssp BHHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSC---------
T ss_pred ChhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccCh---------
Confidence 3466889999999998765 556 6888999999999999887765 688999999999999976654443
Q ss_pred cccccccCCCCccEEecCCCcccc-CCCccccCCCCCEEEccCCC-CCCCCCCccccccccccCCCCchhhhhhcccCCC
Q 037483 413 NVSETLGQVEILEELDISGTTIRE-PPSSIFAIKNLKKLSFSGCS-GPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGL 490 (693)
Q Consensus 413 ~lp~~l~~l~~L~~L~l~~n~i~~-lp~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 490 (693)
.++.+++|++|++++|.++. .|..+..+++|++|++++|. +... + .+..+
T Consensus 107 ----~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-----------------------~l~~l 158 (197)
T 4ezg_A 107 ----NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-----------------------PLKTL 158 (197)
T ss_dssp ----CCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-----------------------GGGGC
T ss_pred ----hhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-----------------------hhcCC
Confidence 35678899999999999986 47788999999999999997 4332 1 57788
Q ss_pred CcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCc
Q 037483 491 CSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFV 529 (693)
Q Consensus 491 ~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~ 529 (693)
++|+.|++++|.+++ ++ .+..+++|++|++++|++.
T Consensus 159 ~~L~~L~l~~n~i~~--~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 159 PELKSLNIQFDGVHD--YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp SSCCEEECTTBCCCC--CT-TGGGCSSCCEEEECBC---
T ss_pred CCCCEEECCCCCCcC--hH-HhccCCCCCEEEeeCcccC
Confidence 999999999999954 55 7889999999999999875
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.64 E-value=1e-15 Score=145.71 Aligned_cols=147 Identities=20% Similarity=0.212 Sum_probs=67.7
Q ss_pred ccceeccCCcCceeecCC-cCCCCCCCEEecCCCCCCccCCCCCCCCcccccccccccCCCCccEEecCCCccccCCCc-
Q 037483 363 DLSELYLDGTFITKLPLS-IELLTGLELLNLNDCKNLLRLPSSIDGCFKLENVSETLGQVEILEELDISGTTIREPPSS- 440 (693)
Q Consensus 363 ~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~lp~~- 440 (693)
+|++|++++|.++.++.. +..+++|++|++++|.+.+ +|. ..+..+++|++|++++|.++.+|..
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~------------~~~~~l~~L~~L~Ls~n~l~~~~~~~ 95 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPN------------GVFNKLTSLTYLNLSTNQLQSLPNGV 95 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCT------------TTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc-cCh------------hhcCCCCCcCEEECCCCcCCccCHhH
Confidence 455555555555444332 3445555555555543221 111 1123444555555555555544332
Q ss_pred cccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCE
Q 037483 441 IFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKE 520 (693)
Q Consensus 441 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~ 520 (693)
+..+++|++|++++|.+....+. .+..+++|+.|++++|.++ +..+..+..+++|++
T Consensus 96 ~~~l~~L~~L~L~~N~l~~~~~~----------------------~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~ 152 (208)
T 2o6s_A 96 FDKLTQLKELALNTNQLQSLPDG----------------------VFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQY 152 (208)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTT----------------------TTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCE
T ss_pred hcCccCCCEEEcCCCcCcccCHh----------------------HhccCCcCCEEECCCCccc-eeCHHHhccCCCccE
Confidence 34555555555555544433211 2444555555555555552 222223455555555
Q ss_pred EeCCCCCCcccCccccCCCCCCEEecccccc
Q 037483 521 LYLSKNNFVTLPASISGLLNLKELELEDCAL 551 (693)
Q Consensus 521 L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~ 551 (693)
|++++|.+. ..+++|+.|+++.|.+
T Consensus 153 L~l~~N~~~------~~~~~l~~L~~~~n~~ 177 (208)
T 2o6s_A 153 IWLHDNPWD------CTCPGIRYLSEWINKH 177 (208)
T ss_dssp EECCSCCBC------CCTTTTHHHHHHHHHC
T ss_pred EEecCCCee------cCCCCHHHHHHHHHhC
Confidence 555555432 2334555555555554
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.62 E-value=1.8e-15 Score=157.20 Aligned_cols=171 Identities=22% Similarity=0.195 Sum_probs=124.4
Q ss_pred cEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCC-cC-CCCCCCEEecCCCCCCccCCCCCCCCcccccccccc
Q 037483 341 RTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLS-IE-LLTGLELLNLNDCKNLLRLPSSIDGCFKLENVSETL 418 (693)
Q Consensus 341 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~-~~-~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~lp~~l 418 (693)
++++++++. +..+|..+. +.++.|+|++|.++.++.. +. .+++|++|+|++|.+....+ ..+
T Consensus 21 ~~l~c~~~~-l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~-------------~~~ 84 (361)
T 2xot_A 21 NILSCSKQQ-LPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS-------------EAF 84 (361)
T ss_dssp TEEECCSSC-CSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECT-------------TTT
T ss_pred CEEEeCCCC-cCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccCh-------------hhc
Confidence 567777754 344565443 4578888888888877655 44 78888888888885443322 235
Q ss_pred cCCCCccEEecCCCccccCCC-ccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCeee
Q 037483 419 GQVEILEELDISGTTIREPPS-SIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLD 497 (693)
Q Consensus 419 ~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 497 (693)
.++++|++|+|++|.++.++. .+..+++|++|+|++|.+....+. .+.++++|+.|+
T Consensus 85 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~----------------------~~~~l~~L~~L~ 142 (361)
T 2xot_A 85 VPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRN----------------------AFEDMAQLQKLY 142 (361)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT----------------------TTTTCTTCCEEE
T ss_pred cCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHH----------------------HhCCcccCCEEE
Confidence 677888888888888887754 577888888888888877654332 577888888999
Q ss_pred CCCCCCCCCCCCccC----CCCCCCCEEeCCCCCCcccC-ccccCCCC--CCEEecccccc
Q 037483 498 LSYCGLGEGAIPNDI----GNLCSLKELYLSKNNFVTLP-ASISGLLN--LKELELEDCAL 551 (693)
Q Consensus 498 ls~n~l~~~~~p~~l----~~l~~L~~L~L~~n~l~~lp-~~l~~l~~--L~~L~L~~n~~ 551 (693)
|++|.++. +|..+ ..+++|+.|+|++|.++.+| ..+..++. |+.|+|++|++
T Consensus 143 L~~N~l~~--l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 143 LSQNQISR--FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCSSCCCS--CCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred CCCCcCCe--eCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence 99888844 66543 56888999999999888887 45666776 47888888887
No 107
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.62 E-value=5.2e-17 Score=167.46 Aligned_cols=203 Identities=17% Similarity=0.161 Sum_probs=154.5
Q ss_pred cCCC--CCCcEEEcCCCCCcccchhhhcCccccceeccCCcCcee--ecCCcCCCCCCCEEecCCCCCCccCCCCCCCCc
Q 037483 334 LSSL--KCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITK--LPLSIELLTGLELLNLNDCKNLLRLPSSIDGCF 409 (693)
Q Consensus 334 l~~l--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~--l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~ 409 (693)
+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.++. ++..+..+++|++|++++|.+...
T Consensus 64 ~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~--------- 133 (336)
T 2ast_B 64 TGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDP--------- 133 (336)
T ss_dssp HHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHH---------
T ss_pred HHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHH---------
Confidence 4445 7899999999876665554 5578999999999998873 777788899999999999864433
Q ss_pred ccccccccccCCCCccEEecCCC-cccc--CCCccccCCCCCEEEccCC-CCCCCCCCccccccccccCCCCchhhhhhc
Q 037483 410 KLENVSETLGQVEILEELDISGT-TIRE--PPSSIFAIKNLKKLSFSGC-SGPPSSASWHLHFPFNLMGKSLYPVALMLF 485 (693)
Q Consensus 410 ~L~~lp~~l~~l~~L~~L~l~~n-~i~~--lp~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (693)
.+..++.+++|++|++++| .++. ++..+..+++|++|++++| .+... ..+.
T Consensus 134 ----~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~---------------------~~~~ 188 (336)
T 2ast_B 134 ----IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK---------------------HVQV 188 (336)
T ss_dssp ----HHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH---------------------HHHH
T ss_pred ----HHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH---------------------HHHH
Confidence 3445677899999999999 6773 5777889999999999999 55421 1122
Q ss_pred ccCCCC-cCCeeeCCCC--CCCCCCCCccCCCCCCCCEEeCCCCC-Cc-ccCccccCCCCCCEEecccccceeecc---C
Q 037483 486 SLSGLC-SLSKLDLSYC--GLGEGAIPNDIGNLCSLKELYLSKNN-FV-TLPASISGLLNLKELELEDCALKLRKS---D 557 (693)
Q Consensus 486 ~l~~l~-~L~~L~ls~n--~l~~~~~p~~l~~l~~L~~L~L~~n~-l~-~lp~~l~~l~~L~~L~L~~n~~~~~~~---~ 557 (693)
.+..++ +|++|++++| .++++.+|..+..+++|++|++++|. ++ ..+..+.++++|++|++++|.. .... .
T Consensus 189 ~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~ 267 (336)
T 2ast_B 189 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD-IIPETLLE 267 (336)
T ss_dssp HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT-CCGGGGGG
T ss_pred HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCC-CCHHHHHH
Confidence 567788 9999999999 56545677778889999999999999 66 5667889999999999999962 2222 2
Q ss_pred cccccccCCchhhhc
Q 037483 558 CTIIKCIDSLKLLVN 572 (693)
Q Consensus 558 ~~~l~~l~~l~~~~n 572 (693)
...+++|..|++.++
T Consensus 268 l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 268 LGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGCTTCCEEECTTS
T ss_pred HhcCCCCCEEeccCc
Confidence 334555555555544
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.62 E-value=2.3e-15 Score=156.36 Aligned_cols=176 Identities=20% Similarity=0.154 Sum_probs=136.0
Q ss_pred cceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCccccccccccc-CCCCccEEecCCCccccCC-Ccc
Q 037483 364 LSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLENVSETLG-QVEILEELDISGTTIREPP-SSI 441 (693)
Q Consensus 364 L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~lp~~l~-~l~~L~~L~l~~n~i~~lp-~~~ 441 (693)
-+.++++++.++.+|..+. ..++.|+|++|.+.+..+. .+. ++++|++|+|++|.++.++ ..+
T Consensus 20 ~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~-------------~~~~~l~~L~~L~L~~N~i~~i~~~~~ 84 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAE-------------WTPTRLTNLHSLLLSHNHLNFISSEAF 84 (361)
T ss_dssp TTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTT-------------SSSSCCTTCCEEECCSSCCCEECTTTT
T ss_pred CCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChh-------------hhhhcccccCEEECCCCcCCccChhhc
Confidence 3689999999999997664 4699999999965443332 234 7889999999999999885 568
Q ss_pred ccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEE
Q 037483 442 FAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKEL 521 (693)
Q Consensus 442 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L 521 (693)
..+++|++|+|++|.+....+. .+.++++|+.|+|++|.++ ...|..|..+++|++|
T Consensus 85 ~~l~~L~~L~Ls~N~l~~~~~~----------------------~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L 141 (361)
T 2xot_A 85 VPVPNLRYLDLSSNHLHTLDEF----------------------LFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKL 141 (361)
T ss_dssp TTCTTCCEEECCSSCCCEECTT----------------------TTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEE
T ss_pred cCCCCCCEEECCCCcCCcCCHH----------------------HhCCCcCCCEEECCCCccc-EECHHHhCCcccCCEE
Confidence 9999999999999987655332 5788999999999999994 4457789999999999
Q ss_pred eCCCCCCcccCccc----cCCCCCCEEecccccceee-ccCcccccc--cCCchhhhcchhhh
Q 037483 522 YLSKNNFVTLPASI----SGLLNLKELELEDCALKLR-KSDCTIIKC--IDSLKLLVNNGLAI 577 (693)
Q Consensus 522 ~L~~n~l~~lp~~l----~~l~~L~~L~L~~n~~~~~-~~~~~~l~~--l~~l~~~~n~~~~~ 577 (693)
+|++|.++.+|..+ ..+++|+.|+|++|++... ...+..+.. +..+.+.+|...+.
T Consensus 142 ~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 142 YLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp ECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred ECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence 99999999999665 5799999999999998422 222333433 25566666644333
No 109
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.62 E-value=1.9e-17 Score=181.32 Aligned_cols=188 Identities=16% Similarity=0.106 Sum_probs=138.1
Q ss_pred cCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcC--------------ceeecCCcCCCCCCCEEe-cCCCCCC
Q 037483 334 LSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTF--------------ITKLPLSIELLTGLELLN-LNDCKNL 398 (693)
Q Consensus 334 l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~--------------l~~l~~~~~~l~~L~~L~-L~~~~~~ 398 (693)
+..+++|+.|+|++|. ++.+|+.++++++|++|++++|. ....|..++.+++|+.|+ ++.|.+
T Consensus 345 ~~~~~~L~~L~Ls~n~-L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~- 422 (567)
T 1dce_A 345 SATDEQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL- 422 (567)
T ss_dssp CSTTTTSSSCCCCHHH-HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH-
T ss_pred cccCccceeccCChhh-HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc-
Confidence 4678899999999876 45788889999999999987763 123445567778888887 554421
Q ss_pred ccCCCCCCCCcccccccccccCCCCccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCc
Q 037483 399 LRLPSSIDGCFKLENVSETLGQVEILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLY 478 (693)
Q Consensus 399 ~~lp~~~~~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (693)
..++...-.-..+..+|. ..|+.|++++|.++++|. +..+++|+.|++++|.+... |.
T Consensus 423 ~~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~l-p~--------------- 480 (567)
T 1dce_A 423 DDLRSKFLLENSVLKMEY-----ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRAL-PP--------------- 480 (567)
T ss_dssp HHHHHHHHHHHHHHHHHH-----TTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCC-CG---------------
T ss_pred chhhhhhhhcccccccCc-----cCceEEEecCCCCCCCcC-ccccccCcEeecCccccccc-ch---------------
Confidence 111100000001112221 258899999999999886 88999999999999987633 21
Q ss_pred hhhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCccc--CccccCCCCCCEEecccccceeec
Q 037483 479 PVALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTL--PASISGLLNLKELELEDCALKLRK 555 (693)
Q Consensus 479 ~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~l--p~~l~~l~~L~~L~L~~n~~~~~~ 555 (693)
.++++++|+.|+|++|.++. +| .++.+++|++|+|++|.++.+ |..+..+++|+.|+|++|++....
T Consensus 481 -------~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 481 -------ALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp -------GGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred -------hhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 67888999999999999854 77 788999999999999999977 888999999999999999885443
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.62 E-value=7.8e-15 Score=140.69 Aligned_cols=150 Identities=19% Similarity=0.251 Sum_probs=121.1
Q ss_pred cEEEcCCCCCcccchhhhcCccccceeccCCcCceeecC-CcCCCCCCCEEecCCCCCCccCCCCCCCCccccccccccc
Q 037483 341 RTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPL-SIELLTGLELLNLNDCKNLLRLPSSIDGCFKLENVSETLG 419 (693)
Q Consensus 341 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~lp~~l~ 419 (693)
+.++++++. ...+|..+. ++|++|++++|.++.++. .+..+++|++|+|++|.+.+..| ..+.
T Consensus 14 ~~v~c~~~~-l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~-------------~~~~ 77 (220)
T 2v9t_B 14 NIVDCRGKG-LTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP-------------DAFQ 77 (220)
T ss_dssp TEEECTTSC-CSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECT-------------TTTT
T ss_pred CEEEcCCCC-cCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCH-------------HHhh
Confidence 567777754 445565443 689999999999998876 67889999999999996655444 3457
Q ss_pred CCCCccEEecCCCccccCCCc-cccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCeeeC
Q 037483 420 QVEILEELDISGTTIREPPSS-IFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDL 498 (693)
Q Consensus 420 ~l~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 498 (693)
++++|++|+|++|.++.+|.. +..+++|++|++++|.+....+. .+..+++|+.|+|
T Consensus 78 ~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~----------------------~~~~l~~L~~L~L 135 (220)
T 2v9t_B 78 GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVD----------------------AFQDLHNLNLLSL 135 (220)
T ss_dssp TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----------------------TTTTCTTCCEEEC
T ss_pred CCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHH----------------------HcCCCCCCCEEEC
Confidence 788899999999999999765 57899999999999988766443 6788999999999
Q ss_pred CCCCCCCCCCCccCCCCCCCCEEeCCCCCCc
Q 037483 499 SYCGLGEGAIPNDIGNLCSLKELYLSKNNFV 529 (693)
Q Consensus 499 s~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~ 529 (693)
++|.++ +..+..+..+++|++|+|++|.+.
T Consensus 136 ~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 136 YDNKLQ-TIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CSSCCS-CCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCcCC-EECHHHHhCCCCCCEEEeCCCCcC
Confidence 999994 344456889999999999999886
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=1.6e-17 Score=181.92 Aligned_cols=190 Identities=23% Similarity=0.167 Sum_probs=143.5
Q ss_pred cCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCcccccccccccCCCCccEEe-cCCCccccC
Q 037483 359 ASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLENVSETLGQVEILEELD-ISGTTIREP 437 (693)
Q Consensus 359 ~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~lp~~l~~l~~L~~L~-l~~n~i~~l 437 (693)
..+++|+.|+|++|.++.+|..++.+++|+.|++++|.....+|..+..+......|..++++++|+.|+ ++.|.+..+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 5678999999999999999999999999999999776422222221111222334455666666777776 454433322
Q ss_pred CC------cccc--CCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCeeeCCCCCCCCCCCC
Q 037483 438 PS------SIFA--IKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIP 509 (693)
Q Consensus 438 p~------~~~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p 509 (693)
+. .+.. ...|+.|++++|.+.... .++.+++|+.|++++|.++ .+|
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp------------------------~~~~l~~L~~L~Ls~N~l~--~lp 479 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLC------------------------HLEQLLLVTHLDLSHNRLR--ALP 479 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCC------------------------CGGGGTTCCEEECCSSCCC--CCC
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCCCc------------------------CccccccCcEeecCccccc--ccc
Confidence 21 1111 236999999999876531 4778899999999999995 599
Q ss_pred ccCCCCCCCCEEeCCCCCCcccCccccCCCCCCEEecccccceee--ccCcccccccCCchhhhcchh
Q 037483 510 NDIGNLCSLKELYLSKNNFVTLPASISGLLNLKELELEDCALKLR--KSDCTIIKCIDSLKLLVNNGL 575 (693)
Q Consensus 510 ~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~--~~~~~~l~~l~~l~~~~n~~~ 575 (693)
..++.+++|+.|+|++|.++.+| .++.+++|+.|+|++|.+... +.....+++|..|++.+|...
T Consensus 480 ~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 480 PALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp GGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred hhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence 99999999999999999999999 899999999999999999655 566777888888888877554
No 112
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.60 E-value=3e-15 Score=154.84 Aligned_cols=203 Identities=18% Similarity=0.111 Sum_probs=108.5
Q ss_pred CccccccccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCce-eecC-CcCCCCCCCEE-ecCCCCCCccCC
Q 037483 326 NLSSLLISLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFIT-KLPL-SIELLTGLELL-NLNDCKNLLRLP 402 (693)
Q Consensus 326 ~L~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~l~~-~~~~l~~L~~L-~L~~~~~~~~lp 402 (693)
+|+++|..+ .+++++|+|++|.+....+..|.++++|++|+|++|.+. .+|. .+.++++|..+ .+++|++....|
T Consensus 20 ~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~ 97 (350)
T 4ay9_X 20 KVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP 97 (350)
T ss_dssp TCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECT
T ss_pred CCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCc
Confidence 466666544 356777777777655444456777777788887777764 4543 35667776654 333443222222
Q ss_pred CCCCCCcccccccccccCCCCccEEecCCCccccCCC-ccccCCCCCEEEccCCC-CCCCCCCccccc-----cccccCC
Q 037483 403 SSIDGCFKLENVSETLGQVEILEELDISGTTIREPPS-SIFAIKNLKKLSFSGCS-GPPSSASWHLHF-----PFNLMGK 475 (693)
Q Consensus 403 ~~~~~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~-----~~~~~~~ 475 (693)
..+..+++|++|++++|.+..+|. .+....++..|++.++. +........... ...+...
T Consensus 98 -------------~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N 164 (350)
T 4ay9_X 98 -------------EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN 164 (350)
T ss_dssp -------------TSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS
T ss_pred -------------hhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc
Confidence 335666777777777777776643 33445556666665533 222111100000 0001110
Q ss_pred CCchhhhhhcccCCCCcCCeeeCCC-CCCCCCCCCc-cCCCCCCCCEEeCCCCCCcccCccccCCCCCCEEeccccc
Q 037483 476 SLYPVALMLFSLSGLCSLSKLDLSY-CGLGEGAIPN-DIGNLCSLKELYLSKNNFVTLPASISGLLNLKELELEDCA 550 (693)
Q Consensus 476 ~~~~~~~~~~~l~~l~~L~~L~ls~-n~l~~~~~p~-~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~ 550 (693)
. +..++.......+|+.|++++ |.+ +.+|. .|..+++|++|+|++|+++.+|.. .+.+|+.|.+.+|.
T Consensus 165 ~---i~~i~~~~f~~~~L~~l~l~~~n~l--~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~ 234 (350)
T 4ay9_X 165 G---IQEIHNSAFNGTQLDELNLSDNNNL--EELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTY 234 (350)
T ss_dssp C---CCEECTTSSTTEEEEEEECTTCTTC--CCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCT
T ss_pred c---ccCCChhhccccchhHHhhccCCcc--cCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCC
Confidence 0 011111233445677777764 444 33553 467777777777777777777743 24455555555543
No 113
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.60 E-value=2.1e-14 Score=136.70 Aligned_cols=151 Identities=19% Similarity=0.194 Sum_probs=123.1
Q ss_pred cceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCcccccccccccCCCCccEEecCCCccccCCCc-cc
Q 037483 364 LSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLENVSETLGQVEILEELDISGTTIREPPSS-IF 442 (693)
Q Consensus 364 L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~lp~~-~~ 442 (693)
-+.++.+++.++.+|..+ .++|++|++++|.+.+..+ ..++++++|++|++++|.++.+|.. +.
T Consensus 9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~-------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 73 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPN-------------GVFDELTSLTQLYLGGNKLQSLPNGVFN 73 (208)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCT-------------TTTTTCTTCSEEECCSSCCCCCCTTTTT
T ss_pred CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCCh-------------hhhcccccCcEEECCCCccCccChhhcC
Confidence 356778888888888655 4689999999996543222 2357789999999999999998654 68
Q ss_pred cCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEe
Q 037483 443 AIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELY 522 (693)
Q Consensus 443 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~ 522 (693)
.+++|++|++++|.+....+. .+..+++|+.|++++|.++ +..+..+..+++|++|+
T Consensus 74 ~l~~L~~L~Ls~n~l~~~~~~----------------------~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~ 130 (208)
T 2o6s_A 74 KLTSLTYLNLSTNQLQSLPNG----------------------VFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLR 130 (208)
T ss_dssp TCTTCCEEECCSSCCCCCCTT----------------------TTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCCCcCEEECCCCcCCccCHh----------------------HhcCccCCCEEEcCCCcCc-ccCHhHhccCCcCCEEE
Confidence 899999999999988755432 5788999999999999994 33344588999999999
Q ss_pred CCCCCCcccCcc-ccCCCCCCEEecccccce
Q 037483 523 LSKNNFVTLPAS-ISGLLNLKELELEDCALK 552 (693)
Q Consensus 523 L~~n~l~~lp~~-l~~l~~L~~L~L~~n~~~ 552 (693)
+++|.++.+|.. +..+++|++|++++|++.
T Consensus 131 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 131 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCCCccceeCHHHhccCCCccEEEecCCCee
Confidence 999999988754 788999999999999864
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.60 E-value=1.3e-14 Score=139.03 Aligned_cols=150 Identities=20% Similarity=0.188 Sum_probs=122.7
Q ss_pred cEEEcCCCCCcccchhhhcCccccceeccCCcCceeecC--CcCCCCCCCEEecCCCCCCccCCCCCCCCcccccccccc
Q 037483 341 RTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPL--SIELLTGLELLNLNDCKNLLRLPSSIDGCFKLENVSETL 418 (693)
Q Consensus 341 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~--~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~lp~~l 418 (693)
+++++++|.+ +.+|..+. +.+++|+|++|.++.++. .+..+++|++|+|++|.+.+..+. .+
T Consensus 14 ~~l~~s~n~l-~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~-------------~~ 77 (220)
T 2v70_A 14 TTVDCSNQKL-NKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG-------------AF 77 (220)
T ss_dssp TEEECCSSCC-SSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTT-------------TT
T ss_pred CEeEeCCCCc-ccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHH-------------Hh
Confidence 5889988764 45665543 467899999999998843 378999999999999965443332 46
Q ss_pred cCCCCccEEecCCCccccCCC-ccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCeee
Q 037483 419 GQVEILEELDISGTTIREPPS-SIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLD 497 (693)
Q Consensus 419 ~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 497 (693)
.++++|++|++++|.++.++. .+..+++|++|++++|.+....+. .+..+++|+.|+
T Consensus 78 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----------------------~~~~l~~L~~L~ 135 (220)
T 2v70_A 78 EGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGND----------------------SFIGLSSVRLLS 135 (220)
T ss_dssp TTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTT----------------------SSTTCTTCSEEE
T ss_pred CCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHh----------------------HcCCCccCCEEE
Confidence 778899999999999998865 488999999999999988766443 678899999999
Q ss_pred CCCCCCCCCCCCccCCCCCCCCEEeCCCCCCc
Q 037483 498 LSYCGLGEGAIPNDIGNLCSLKELYLSKNNFV 529 (693)
Q Consensus 498 ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~ 529 (693)
|++|.++ +..|..+..+++|++|+|++|.++
T Consensus 136 L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 136 LYDNQIT-TVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CTTSCCC-CBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCCCcCC-EECHHHhcCCCCCCEEEecCcCCc
Confidence 9999994 455888999999999999999887
No 115
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.59 E-value=4.3e-16 Score=162.05 Aligned_cols=114 Identities=15% Similarity=0.119 Sum_probs=59.7
Q ss_pred CCCCCcEEEcCCCCCcccch----hhhcCcc-ccceeccCCcCceee-cCCcCCC-----CCCCEEecCCCCCCccCCCC
Q 037483 336 SLKCLRTLELSGCSKLKRFL----EIVASME-DLSELYLDGTFITKL-PLSIELL-----TGLELLNLNDCKNLLRLPSS 404 (693)
Q Consensus 336 ~l~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~L~~~~l~~l-~~~~~~l-----~~L~~L~L~~~~~~~~lp~~ 404 (693)
..++|++|++++|.+....+ ..+..++ +|++|+|++|.++.. +..+..+ ++|++|+|++|.+....+..
T Consensus 20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 99 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE 99 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence 33447777777766554444 5566666 677777777766643 2223332 67777777777543322211
Q ss_pred CCCCcccccccccccCC-CCccEEecCCCccccCCC-c----ccc-CCCCCEEEccCCCCC
Q 037483 405 IDGCFKLENVSETLGQV-EILEELDISGTTIREPPS-S----IFA-IKNLKKLSFSGCSGP 458 (693)
Q Consensus 405 ~~~~~~L~~lp~~l~~l-~~L~~L~l~~n~i~~lp~-~----~~~-l~~L~~L~l~~~~~~ 458 (693)
+...+..+ ++|++|++++|.++..+. . +.. .++|++|++++|.+.
T Consensus 100 ---------l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 100 ---------LVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp ---------HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred ---------HHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 11122333 456666666666554432 1 122 245666666665443
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.58 E-value=2.4e-14 Score=138.22 Aligned_cols=141 Identities=21% Similarity=0.216 Sum_probs=118.2
Q ss_pred CccccccccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCC-cCCCCCCCEEecCCCCCCccCCCC
Q 037483 326 NLSSLLISLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLS-IELLTGLELLNLNDCKNLLRLPSS 404 (693)
Q Consensus 326 ~L~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~L~~~~~~~~lp~~ 404 (693)
.+..+|..+. ++|++|++++|.+.+..|..+..+++|++|+|++|.++.+|.. +..+++|++|+|++|.+.+..+
T Consensus 30 ~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~-- 105 (229)
T 3e6j_A 30 RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS-- 105 (229)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--
T ss_pred CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccCh--
Confidence 4667765543 8999999999998888888899999999999999999988755 5899999999999996543222
Q ss_pred CCCCcccccccccccCCCCccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhh
Q 037483 405 IDGCFKLENVSETLGQVEILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALML 484 (693)
Q Consensus 405 ~~~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (693)
..+..+++|++|++++|.++.+|..+..+++|++|++++|.+....+.
T Consensus 106 -----------~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~--------------------- 153 (229)
T 3e6j_A 106 -----------AVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHG--------------------- 153 (229)
T ss_dssp -----------TTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTT---------------------
T ss_pred -----------hHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHH---------------------
Confidence 235778999999999999999999999999999999999988765432
Q ss_pred cccCCCCcCCeeeCCCCCC
Q 037483 485 FSLSGLCSLSKLDLSYCGL 503 (693)
Q Consensus 485 ~~l~~l~~L~~L~ls~n~l 503 (693)
.+..+++|+.|++++|.+
T Consensus 154 -~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 154 -AFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp -TTTTCTTCCEEECTTSCB
T ss_pred -HHhCCCCCCEEEeeCCCc
Confidence 567778888888888877
No 117
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.57 E-value=1.8e-14 Score=148.95 Aligned_cols=203 Identities=17% Similarity=0.159 Sum_probs=152.1
Q ss_pred cccCcCcccccc-ccCCCCCCcEEEcCCCCCcccch-hhhcCccccce-eccCCcCceeec-CCcCCCCCCCEEecCCCC
Q 037483 321 LKGCKNLSSLLI-SLSSLKCLRTLELSGCSKLKRFL-EIVASMEDLSE-LYLDGTFITKLP-LSIELLTGLELLNLNDCK 396 (693)
Q Consensus 321 l~~~~~L~~l~~-~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~-L~L~~~~l~~l~-~~~~~l~~L~~L~L~~~~ 396 (693)
+.+ .+++.++. .|.++++|++|+|++|.+.+.++ ..|.+++++.+ +.+++|.++.++ ..+..+++|++|++++|.
T Consensus 37 Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~ 115 (350)
T 4ay9_X 37 FVL-TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG 115 (350)
T ss_dssp EES-CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEEC
T ss_pred ccC-CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccc
Confidence 444 35777875 58999999999999998877665 46788888776 566778999885 557899999999999997
Q ss_pred CCccCCCCCCC-----------Ccccccccc-cccCC-CCccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCC
Q 037483 397 NLLRLPSSIDG-----------CFKLENVSE-TLGQV-EILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSAS 463 (693)
Q Consensus 397 ~~~~lp~~~~~-----------~~~L~~lp~-~l~~l-~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~ 463 (693)
+....+..+.. +.++..++. .+..+ ..++.|++++|.++.+|.......+|+.|++.+|......+.
T Consensus 116 l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~ 195 (350)
T 4ay9_X 116 IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPN 195 (350)
T ss_dssp CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCT
T ss_pred cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCH
Confidence 76554443322 233344443 34444 468899999999999988888888999999986554443332
Q ss_pred ccccccccccCCCCchhhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCC-CCcccCccccCCCCCC
Q 037483 464 WHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKN-NFVTLPASISGLLNLK 542 (693)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~ 542 (693)
. .|.++++|+.|++++|.++. +|.. .+.+|+.|.+.++ +++.+| .+.++++|+
T Consensus 196 ~---------------------~f~~l~~L~~LdLs~N~l~~--lp~~--~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~ 249 (350)
T 4ay9_X 196 D---------------------VFHGASGPVILDISRTRIHS--LPSY--GLENLKKLRARSTYNLKKLP-TLEKLVALM 249 (350)
T ss_dssp T---------------------TTTTEECCSEEECTTSCCCC--CCSS--SCTTCCEEECTTCTTCCCCC-CTTTCCSCC
T ss_pred H---------------------HhccCcccchhhcCCCCcCc--cChh--hhccchHhhhccCCCcCcCC-CchhCcChh
Confidence 1 67889999999999999954 7753 3566777776554 677898 688999999
Q ss_pred EEeccccc
Q 037483 543 ELELEDCA 550 (693)
Q Consensus 543 ~L~L~~n~ 550 (693)
.+++.++.
T Consensus 250 ~l~l~~~~ 257 (350)
T 4ay9_X 250 EASLTYPS 257 (350)
T ss_dssp EEECSCHH
T ss_pred hCcCCCCc
Confidence 99998654
No 118
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.57 E-value=3.4e-16 Score=162.83 Aligned_cols=216 Identities=17% Similarity=0.161 Sum_probs=149.3
Q ss_pred ccCCCC-CCcEEEcCCCCCcccchhhhcCc-----cccceeccCCcCceeecCC-----cCCC-CCCCEEecCCCCCCcc
Q 037483 333 SLSSLK-CLRTLELSGCSKLKRFLEIVASM-----EDLSELYLDGTFITKLPLS-----IELL-TGLELLNLNDCKNLLR 400 (693)
Q Consensus 333 ~l~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~L~~~~l~~l~~~-----~~~l-~~L~~L~L~~~~~~~~ 400 (693)
.+.+++ +|++|++++|.+....+..+..+ ++|++|+|++|.++..+.. +..+ ++|++|++++|.+...
T Consensus 45 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 124 (362)
T 3goz_A 45 AFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK 124 (362)
T ss_dssp HHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred HHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH
Confidence 566788 89999999998777666666654 8999999999998854322 4445 8999999999965433
Q ss_pred CCCCCCCCcccccccccccCC-CCccEEecCCCccccC-----CCccccCC-CCCEEEccCCCCCCCCCCcccccccccc
Q 037483 401 LPSSIDGCFKLENVSETLGQV-EILEELDISGTTIREP-----PSSIFAIK-NLKKLSFSGCSGPPSSASWHLHFPFNLM 473 (693)
Q Consensus 401 lp~~~~~~~~L~~lp~~l~~l-~~L~~L~l~~n~i~~l-----p~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 473 (693)
.+ ..+...+..+ ++|++|++++|.++.. +..+..++ +|++|++++|.+....+
T Consensus 125 ~~---------~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~----------- 184 (362)
T 3goz_A 125 SS---------SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNC----------- 184 (362)
T ss_dssp CH---------HHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH-----------
T ss_pred HH---------HHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhH-----------
Confidence 21 1222334443 5899999999998843 44455565 99999999997654421
Q ss_pred CCCCchhhhhhcccCCC-CcCCeeeCCCCCCCCCC---CCccCCC-CCCCCEEeCCCCCCcccC-----ccccCCCCCCE
Q 037483 474 GKSLYPVALMLFSLSGL-CSLSKLDLSYCGLGEGA---IPNDIGN-LCSLKELYLSKNNFVTLP-----ASISGLLNLKE 543 (693)
Q Consensus 474 ~~~~~~~~~~~~~l~~l-~~L~~L~ls~n~l~~~~---~p~~l~~-l~~L~~L~L~~n~l~~lp-----~~l~~l~~L~~ 543 (693)
..+...+..+ ++|+.|++++|.+++.. ++..+.. .++|++|+|++|.++..+ ..+..+++|++
T Consensus 185 -------~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~ 257 (362)
T 3goz_A 185 -------AELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT 257 (362)
T ss_dssp -------HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSE
T ss_pred -------HHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccE
Confidence 1122244555 48999999999984321 3444444 458999999999988543 34577889999
Q ss_pred Eecccccc--------eeeccCcccccccCCchhhhcchh
Q 037483 544 LELEDCAL--------KLRKSDCTIIKCIDSLKLLVNNGL 575 (693)
Q Consensus 544 L~L~~n~~--------~~~~~~~~~l~~l~~l~~~~n~~~ 575 (693)
|++++|.+ ......++.+++|..+++..|...
T Consensus 258 L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 258 VYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp EEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred EEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 99999983 222334556677777777766543
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.54 E-value=9.9e-15 Score=133.72 Aligned_cols=40 Identities=25% Similarity=0.149 Sum_probs=17.5
Q ss_pred cCCCCCCCCEEeCCCCCCcccCc----cccCCCCCCEEeccccc
Q 037483 511 DIGNLCSLKELYLSKNNFVTLPA----SISGLLNLKELELEDCA 550 (693)
Q Consensus 511 ~l~~l~~L~~L~L~~n~l~~lp~----~l~~l~~L~~L~L~~n~ 550 (693)
.+..+++|++|++++|.++.+|. .+..+++|++|++++|.
T Consensus 115 ~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 115 PLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp GGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred HHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 34444444444444444444433 33444444444444444
No 120
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.53 E-value=1.5e-13 Score=128.57 Aligned_cols=107 Identities=26% Similarity=0.311 Sum_probs=84.8
Q ss_pred CCccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCeeeCCCC
Q 037483 422 EILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYC 501 (693)
Q Consensus 422 ~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n 501 (693)
++|++|++++|.++.+|..+..+++|++|++++|.+....+. .|.++++|+.|+|++|
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~----------------------~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQ----------------------SFSNMTQLLTLILSYN 88 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTT----------------------TTTTCTTCCEEECCSS
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHh----------------------HccCCCCCCEEECCCC
Confidence 356777777777777777777777777777777776655332 5778888889999999
Q ss_pred CCCCCCCCccCCCCCCCCEEeCCCCCCcccCc-cccCCCCCCEEecccccc
Q 037483 502 GLGEGAIPNDIGNLCSLKELYLSKNNFVTLPA-SISGLLNLKELELEDCAL 551 (693)
Q Consensus 502 ~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n~~ 551 (693)
.++ +..|..|..+++|++|+|++|.++.+|. .+..+++|+.|+|++|++
T Consensus 89 ~l~-~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 89 RLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCC-BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred ccC-EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 884 3445678999999999999999998885 578899999999999987
No 121
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.53 E-value=7.5e-14 Score=148.06 Aligned_cols=250 Identities=17% Similarity=0.140 Sum_probs=150.7
Q ss_pred ccCCCCccccchhHHHHHHHH-hcC-CC--CCeEEEEE--EcCCCchHHHHHHHHHHHHhccc-----c-eeEEEEccc-
Q 037483 13 SETLKKLVRIDSCLEELRSLM-DEG-LN--DDVRMIGI--CGMGGLGKTTLVRAVYDLISHEF-----E-GSSFLVDEV- 79 (693)
Q Consensus 13 ~~~~~~~vGr~~~~~~l~~~l-~~~-~~--~~~~~v~I--~G~~GiGKTtLa~~~~~~~~~~f-----~-~~~~~~~~~- 79 (693)
...+..++||++++++|.+.+ ... .+ +..+.+.| +|++|+|||+||+++++.....+ . ..+|+....
T Consensus 18 ~~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (412)
T 1w5s_A 18 NYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNA 97 (412)
T ss_dssp TCCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGC
T ss_pred ccCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCC
Confidence 344578999999999999998 532 11 24567777 99999999999999998776531 2 234554210
Q ss_pred --------------C----------------------CCCCeEEEEEecCCChh--------hhhHHhcCCCcC---C--
Q 037483 80 --------------G----------------------CNTKKVLLVIDDVVDIK--------QLEYLVGKREWF---G-- 110 (693)
Q Consensus 80 --------------~----------------------~~~~~~LlvlDdv~~~~--------~~~~l~~~~~~~---~-- 110 (693)
+ ..+++++|||||++... .+..+...+... +
T Consensus 98 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~ 177 (412)
T 1w5s_A 98 PNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGV 177 (412)
T ss_dssp CSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSC
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCC
Confidence 0 01468999999997643 233222222111 2
Q ss_pred CCceEEEEeCChHHHHHc---------CCCceeeCCCCCHHHHHHHHHHhc---ccCCCCchHHHHHHHHHHHHhC----
Q 037483 111 SGSRIIITSRDEHLLKTH---------GVDELCEPNGLNYDEALQLLNTKA---FKTHKPLEECAKLSERVPQYAG---- 174 (693)
Q Consensus 111 ~~~~iliTtR~~~~~~~~---------~~~~~~~l~~L~~~ea~~l~~~~~---~~~~~~~~~~~~~~~~i~~~~~---- 174 (693)
....+|+|||...+.... .....+.+++++.+++.++|...+ +..... ..+....+++.++
T Consensus 178 ~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~ 254 (412)
T 1w5s_A 178 NRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVW---EPRHLELISDVYGEDKG 254 (412)
T ss_dssp CBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSC---CHHHHHHHHHHHCGGGT
T ss_pred ceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCC---ChHHHHHHHHHHHHhcc
Confidence 345578788765432111 112348999999999999997654 221111 1345677888999
Q ss_pred --CCchhHHHHhhhh---c---CC---ChHHHHHHHHHhccCCCchHHHHHHHhhccCcHhhHhHHhhhhccc----CCC
Q 037483 175 --GLPLALKVLGSFL---N---GR---STDQWRSTLERLKRDPPNKIMSILQISFDGLQDSEKKIFLDVACFF----KWK 239 (693)
Q Consensus 175 --g~Plal~~~~~~l---~---~~---~~~~w~~~l~~l~~~~~~~~~~~l~~s~~~L~~~~~~~~~~la~f~----~~~ 239 (693)
|+|..+..++... . +. +...+..++..... ...+..+++.||+..+.++..+|.+. .+.
T Consensus 255 ~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~ 328 (412)
T 1w5s_A 255 GDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGMEWI 328 (412)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSB
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCc
Confidence 9997665554321 1 11 23334333332210 23344567889999999999998754 223
Q ss_pred CHHHHHH----HH-HHcCCCc------cchhhhhhcCCcEEEe
Q 037483 240 SREYVTK----IL-EACGFSP------VIGIEVLIEKSLLIVD 271 (693)
Q Consensus 240 ~~~~l~~----~~-~~~~~~~------~~~l~~L~~~sLi~~~ 271 (693)
+...+.. +. ...|... ...++.|.+.++|...
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 329 NAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp CHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 4444332 22 3334321 3458899999999875
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.53 E-value=1.7e-14 Score=132.16 Aligned_cols=137 Identities=23% Similarity=0.182 Sum_probs=115.0
Q ss_pred CccccceeccCCcCce--eecCCcCCCCCCCEEecCCCCCCccCCCCCCCCcccccccccccCCCCccEEecCCCcccc-
Q 037483 360 SMEDLSELYLDGTFIT--KLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLENVSETLGQVEILEELDISGTTIRE- 436 (693)
Q Consensus 360 ~l~~L~~L~L~~~~l~--~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~- 436 (693)
..++|++|++++|.++ .+|..+..+++|++|++++|.+... ..++.+++|++|++++|.++.
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---------------~~~~~l~~L~~L~Ls~N~l~~~ 86 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---------------SNLPKLPKLKKLELSENRIFGG 86 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---------------SSCCCCSSCCEEEEESCCCCSC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---------------hhhccCCCCCEEECcCCcCchH
Confidence 4578999999999998 8998889999999999999964322 346788999999999999998
Q ss_pred CCCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCeeeCCCCCCCCCCCCc----cC
Q 037483 437 PPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPN----DI 512 (693)
Q Consensus 437 lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~----~l 512 (693)
+|..+..+++|++|++++|.+...... ..+..+++|+.|++++|.++. +|. .+
T Consensus 87 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~---------------------~~l~~l~~L~~L~l~~N~l~~--~~~~~~~~~ 143 (168)
T 2ell_A 87 LDMLAEKLPNLTHLNLSGNKLKDISTL---------------------EPLKKLECLKSLDLFNCEVTN--LNDYRESVF 143 (168)
T ss_dssp CCHHHHHCTTCCEEECBSSSCCSSGGG---------------------GGGSSCSCCCEEECCSSGGGT--STTHHHHHH
T ss_pred HHHHHhhCCCCCEEeccCCccCcchhH---------------------HHHhcCCCCCEEEeeCCcCcc--hHHHHHHHH
Confidence 676677799999999999987654210 167889999999999999954 565 78
Q ss_pred CCCCCCCEEeCCCCCCcccCcc
Q 037483 513 GNLCSLKELYLSKNNFVTLPAS 534 (693)
Q Consensus 513 ~~l~~L~~L~L~~n~l~~lp~~ 534 (693)
..+++|++|++++|.++.+|+.
T Consensus 144 ~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 144 KLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp TTCSSCCEETTEETTSCBCCSS
T ss_pred HhCccCcEecCCCCChhhcccc
Confidence 9999999999999999988864
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.50 E-value=2.1e-14 Score=128.66 Aligned_cols=107 Identities=21% Similarity=0.145 Sum_probs=61.8
Q ss_pred cCCCCccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCeeeC
Q 037483 419 GQVEILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDL 498 (693)
Q Consensus 419 ~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 498 (693)
+.+++|++|++++|.++.+ ..+..+++|++|++++|.+....+. .+..+++|+.|++
T Consensus 39 ~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~----------------------~~~~l~~L~~L~l 95 (149)
T 2je0_A 39 DEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEV----------------------LAEKCPNLTHLNL 95 (149)
T ss_dssp TTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHH----------------------HHHHCTTCCEEEC
T ss_pred hhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHH----------------------HhhhCCCCCEEEC
Confidence 3344445555555544444 4445555555555555544432110 3334566666666
Q ss_pred CCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCc----cccCCCCCCEEeccc
Q 037483 499 SYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPA----SISGLLNLKELELED 548 (693)
Q Consensus 499 s~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~----~l~~l~~L~~L~L~~ 548 (693)
++|.++.-..+..++.+++|++|++++|.++.+|. .+..+++|++|++++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 66666331122567777788888888887777665 567778888887763
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.49 E-value=2.3e-13 Score=127.42 Aligned_cols=106 Identities=20% Similarity=0.204 Sum_probs=75.1
Q ss_pred CccEEecCCCccccCCCc--cccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCeeeCCC
Q 037483 423 ILEELDISGTTIREPPSS--IFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSY 500 (693)
Q Consensus 423 ~L~~L~l~~n~i~~lp~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~ 500 (693)
+|++|++++|.++.++.. +..+++|++|++++|.+....+. .+.++++|+.|++++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----------------------~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN----------------------AFEGASHIQELQLGE 87 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT----------------------TTTTCTTCCEEECCS
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHh----------------------HcCCcccCCEEECCC
Confidence 456666666666655432 56666666666666665544332 566777777888888
Q ss_pred CCCCCCCCCccCCCCCCCCEEeCCCCCCccc-CccccCCCCCCEEecccccc
Q 037483 501 CGLGEGAIPNDIGNLCSLKELYLSKNNFVTL-PASISGLLNLKELELEDCAL 551 (693)
Q Consensus 501 n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~~ 551 (693)
|.++ +..+..+..+++|++|+|++|+++.+ |..+..+++|++|+|++|++
T Consensus 88 N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 88 NKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCCC-EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CcCC-ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 8773 44455688888999999999988855 67788889999999999887
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.49 E-value=7.1e-15 Score=166.19 Aligned_cols=182 Identities=18% Similarity=0.144 Sum_probs=105.6
Q ss_pred CccccccccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCC
Q 037483 326 NLSSLLISLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSI 405 (693)
Q Consensus 326 ~L~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~ 405 (693)
++...+..+..+++|+.|+|++|.+. .+|..+..+++|++|+|++|.|+.+|..+..+++|++|+|++|.+
T Consensus 212 ~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l-------- 282 (727)
T 4b8c_D 212 RMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRL-------- 282 (727)
T ss_dssp ----------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCC--------
T ss_pred ceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcC--------
Confidence 33444556788889999999988765 666667788999999999999998888888999999999999843
Q ss_pred CCCcccccccccccCCCCccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhc
Q 037483 406 DGCFKLENVSETLGQVEILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLF 485 (693)
Q Consensus 406 ~~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (693)
..+|..+++|++|++|+|++|.++.+|..+..+++|++|+|++|.+....+.
T Consensus 283 ------~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~---------------------- 334 (727)
T 4b8c_D 283 ------TSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLK---------------------- 334 (727)
T ss_dssp ------SSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHH----------------------
T ss_pred ------CccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChH----------------------
Confidence 3445566788889999999999998888899999999999999887654221
Q ss_pred ccCCC-CcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCC--------CCcc-cCccccCCCCCCEEecccccc
Q 037483 486 SLSGL-CSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKN--------NFVT-LPASISGLLNLKELELEDCAL 551 (693)
Q Consensus 486 ~l~~l-~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n--------~l~~-lp~~l~~l~~L~~L~L~~n~~ 551 (693)
.+..+ ..+..|++++|.+ .+.+|. .|+.|++++| .+.. .+..+..+..+....+++|-+
T Consensus 335 ~~~~~~~~~~~l~l~~N~l-~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil 403 (727)
T 4b8c_D 335 ILTEKSVTGLIFYLRDNRP-EIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTL 403 (727)
T ss_dssp HHHHHHHHHHHHHHHHCCC-CCCCCC------C-----------------------------------------CC
T ss_pred HHhhcchhhhHHhhccCcc-cCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeecccc
Confidence 11111 1122467778877 455554 3555666666 2221 122334455556666666654
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.49 E-value=1.7e-13 Score=128.22 Aligned_cols=128 Identities=21% Similarity=0.259 Sum_probs=97.6
Q ss_pred ceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCcccccccccccCCCCccEEecCCCccccC-CCcccc
Q 037483 365 SELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLENVSETLGQVEILEELDISGTTIREP-PSSIFA 443 (693)
Q Consensus 365 ~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~l-p~~~~~ 443 (693)
+.++++++.++.+|..+.. +|++|++++|.+.+..+.. .++.+++|++|++++|.++++ |..+..
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 76 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDG------------LFGRLPHLVKLELKRNQLTGIEPNAFEG 76 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSC------------SGGGCTTCCEEECCSSCCCCBCTTTTTT
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCcc------------ccccCCCCCEEECCCCCCCCcCHhHcCC
Confidence 6777888888877765543 7888888887543322211 257778888888888888877 667888
Q ss_pred CCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeC
Q 037483 444 IKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYL 523 (693)
Q Consensus 444 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L 523 (693)
+++|++|++++|.+....+. .+.++++|+.|++++|.+ .+..|..+..+++|++|+|
T Consensus 77 l~~L~~L~Ls~N~l~~~~~~----------------------~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L 133 (192)
T 1w8a_A 77 ASHIQELQLGENKIKEISNK----------------------MFLGLHQLKTLNLYDNQI-SCVMPGSFEHLNSLTSLNL 133 (192)
T ss_dssp CTTCCEEECCSCCCCEECSS----------------------SSTTCTTCCEEECCSSCC-CEECTTSSTTCTTCCEEEC
T ss_pred cccCCEEECCCCcCCccCHH----------------------HhcCCCCCCEEECCCCcC-CeeCHHHhhcCCCCCEEEe
Confidence 88888888888877655432 577888999999999998 4556788889999999999
Q ss_pred CCCCCc
Q 037483 524 SKNNFV 529 (693)
Q Consensus 524 ~~n~l~ 529 (693)
++|.++
T Consensus 134 ~~N~l~ 139 (192)
T 1w8a_A 134 ASNPFN 139 (192)
T ss_dssp TTCCBC
T ss_pred CCCCcc
Confidence 999887
No 127
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.48 E-value=6.2e-15 Score=158.97 Aligned_cols=63 Identities=24% Similarity=0.268 Sum_probs=38.0
Q ss_pred CCCcCCeeeCCCCCCCCCC---CCccCCCCCCCCEEeCCCCCCcc-----cCcccc-CCCCCCEEecccccc
Q 037483 489 GLCSLSKLDLSYCGLGEGA---IPNDIGNLCSLKELYLSKNNFVT-----LPASIS-GLLNLKELELEDCAL 551 (693)
Q Consensus 489 ~l~~L~~L~ls~n~l~~~~---~p~~l~~l~~L~~L~L~~n~l~~-----lp~~l~-~l~~L~~L~L~~n~~ 551 (693)
.+++|+.|++++|.++... ++..+..+++|++|++++|.++. +...+. ..++|++|++++|.+
T Consensus 254 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 325 (461)
T 1z7x_W 254 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325 (461)
T ss_dssp TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred CCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence 4667777777777763211 45555566777777777777652 222222 235777777777766
No 128
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.48 E-value=3.7e-15 Score=160.74 Aligned_cols=188 Identities=22% Similarity=0.272 Sum_probs=113.0
Q ss_pred CCCCcEEEcCCCCCccc----chhhhcCccccceeccCCcCceee-----cCC-cCCCCCCCEEecCCCCCCccCCCCCC
Q 037483 337 LKCLRTLELSGCSKLKR----FLEIVASMEDLSELYLDGTFITKL-----PLS-IELLTGLELLNLNDCKNLLRLPSSID 406 (693)
Q Consensus 337 l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~~~l~~l-----~~~-~~~l~~L~~L~L~~~~~~~~lp~~~~ 406 (693)
.++|++|++++|.+... ++..+..+++|++|++++|.++.. ... +..+++|++|++++|.+...
T Consensus 198 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~------ 271 (461)
T 1z7x_W 198 PCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAK------ 271 (461)
T ss_dssp CCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH------
T ss_pred CCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHH------
Confidence 34566666666554432 344555556666666666655421 111 22455666666666533221
Q ss_pred CCcccccccccccCCCCccEEecCCCccccC-CCccc-----cCCCCCEEEccCCCCCCCCCCccccccccccCCCCchh
Q 037483 407 GCFKLENVSETLGQVEILEELDISGTTIREP-PSSIF-----AIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPV 480 (693)
Q Consensus 407 ~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~l-p~~~~-----~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (693)
....++..+.++++|++|++++|.++.. +..+. ..++|++|++++|.+... ..
T Consensus 272 ---~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~------------------~~ 330 (461)
T 1z7x_W 272 ---GCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA------------------CC 330 (461)
T ss_dssp ---HHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG------------------GH
T ss_pred ---HHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchH------------------HH
Confidence 1122455566677777777777776532 11121 225777777777764432 11
Q ss_pred hhhhcccCCCCcCCeeeCCCCCCCCCCCC---ccCC-CCCCCCEEeCCCCCCc-----ccCccccCCCCCCEEecccccc
Q 037483 481 ALMLFSLSGLCSLSKLDLSYCGLGEGAIP---NDIG-NLCSLKELYLSKNNFV-----TLPASISGLLNLKELELEDCAL 551 (693)
Q Consensus 481 ~~~~~~l~~l~~L~~L~ls~n~l~~~~~p---~~l~-~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~L~~n~~ 551 (693)
...+..+..+++|+.|++++|.+++.... ..+. ..++|++|++++|.++ .+|..+..+++|++|++++|++
T Consensus 331 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 331 SHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp HHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred HHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence 22333566778899999999987431111 2222 2678999999999888 6788888889999999999987
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=5.3e-14 Score=129.84 Aligned_cols=62 Identities=23% Similarity=0.276 Sum_probs=44.7
Q ss_pred CCCCcCCeeeCCCCCCCCCCCCc--cCCCCCCCCEEeCCCCCCcccCcc----ccCCCCCCEEecccccc
Q 037483 488 SGLCSLSKLDLSYCGLGEGAIPN--DIGNLCSLKELYLSKNNFVTLPAS----ISGLLNLKELELEDCAL 551 (693)
Q Consensus 488 ~~l~~L~~L~ls~n~l~~~~~p~--~l~~l~~L~~L~L~~n~l~~lp~~----l~~l~~L~~L~L~~n~~ 551 (693)
..+++|+.|++++|.++. +|. .+..+++|+.|++++|.++.+|.. +..+++|+.|++++|..
T Consensus 85 ~~l~~L~~L~L~~N~i~~--~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 85 QALPDLTELILTNNSLVE--LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp HHCTTCCEEECCSCCCCC--GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred hcCCCCCEEECCCCcCCc--chhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 455666666666666633 554 677778888888888888877764 77888888888888765
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.46 E-value=4.8e-13 Score=125.16 Aligned_cols=125 Identities=21% Similarity=0.236 Sum_probs=99.9
Q ss_pred ceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCcccccccccccCCCCccEEecCCCccccCC-Ccccc
Q 037483 365 SELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLENVSETLGQVEILEELDISGTTIREPP-SSIFA 443 (693)
Q Consensus 365 ~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~lp-~~~~~ 443 (693)
+.++++++.++.+|..+. ++|++|++++|. ++.+|..+.++++|++|++++|.++.++ ..+..
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~--------------i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~ 76 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQ--------------FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSN 76 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSC--------------CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCc--------------CchhHHHhhcccCCCEEECCCCcCCEeCHhHccC
Confidence 567888888888886553 588889988873 3445566788888999999999998885 46888
Q ss_pred CCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCeeeCCCCCCCCCCCCc-cCCCCCCCCEEe
Q 037483 444 IKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPN-DIGNLCSLKELY 522 (693)
Q Consensus 444 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~-~l~~l~~L~~L~ 522 (693)
+++|++|++++|.+....+. .+.++++|+.|+|++|.++. +|. .+..+++|+.|+
T Consensus 77 l~~L~~L~Ls~N~l~~i~~~----------------------~f~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 77 MTQLLTLILSYNRLRCIPPR----------------------TFDGLKSLRLLSLHGNDISV--VPEGAFNDLSALSHLA 132 (193)
T ss_dssp CTTCCEEECCSSCCCBCCTT----------------------TTTTCTTCCEEECCSSCCCB--CCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCEeCHH----------------------HhCCCCCCCEEECCCCCCCe--eChhhhhcCccccEEE
Confidence 99999999999987765443 57888999999999999943 554 588899999999
Q ss_pred CCCCCCc
Q 037483 523 LSKNNFV 529 (693)
Q Consensus 523 L~~n~l~ 529 (693)
|++|.+.
T Consensus 133 L~~N~~~ 139 (193)
T 2wfh_A 133 IGANPLY 139 (193)
T ss_dssp CCSSCEE
T ss_pred eCCCCee
Confidence 9999876
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.45 E-value=6.4e-14 Score=125.42 Aligned_cols=132 Identities=19% Similarity=0.177 Sum_probs=108.5
Q ss_pred CCCCCcEEEcCCCCCc-ccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCcccccc
Q 037483 336 SLKCLRTLELSGCSKL-KRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLENV 414 (693)
Q Consensus 336 ~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~l 414 (693)
..++|+.|++++|.+. +.+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.+.+. +
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~-------------~ 80 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGG-------------L 80 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSC-------------T
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccch-------------H
Confidence 4578999999999876 57888889999999999999999988 6789999999999999965443 4
Q ss_pred cccccCCCCccEEecCCCccccCC--CccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCc
Q 037483 415 SETLGQVEILEELDISGTTIREPP--SSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCS 492 (693)
Q Consensus 415 p~~l~~l~~L~~L~l~~n~i~~lp--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 492 (693)
|..++.+++|++|++++|.++++| ..+..+++|++|++++|.+....+. ....+..+++
T Consensus 81 ~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-------------------~~~~~~~l~~ 141 (149)
T 2je0_A 81 EVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDY-------------------RENVFKLLPQ 141 (149)
T ss_dssp HHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTH-------------------HHHHHHHCTT
T ss_pred HHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHH-------------------HHHHHHHCCC
Confidence 555677899999999999999875 7899999999999999976644320 0014677889
Q ss_pred CCeeeCCC
Q 037483 493 LSKLDLSY 500 (693)
Q Consensus 493 L~~L~ls~ 500 (693)
|+.|++++
T Consensus 142 L~~L~l~d 149 (149)
T 2je0_A 142 LTYLDGYD 149 (149)
T ss_dssp CCEETTBC
T ss_pred cccccCCC
Confidence 99998864
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.45 E-value=1.1e-13 Score=156.47 Aligned_cols=174 Identities=18% Similarity=0.135 Sum_probs=106.7
Q ss_pred CCCcEEEcCCCCCcccchhhhcCcccccee-----ccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCcccc
Q 037483 338 KCLRTLELSGCSKLKRFLEIVASMEDLSEL-----YLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLE 412 (693)
Q Consensus 338 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L-----~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~ 412 (693)
++++.|+|.++.... .+..+.....|+.+ ++..|.+...+..+..+++|+.|+|++|. +.
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~--------------l~ 237 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQ--------------IF 237 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSC--------------CS
T ss_pred CccceEEeeCCCCCc-chhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCC--------------CC
Confidence 567888888766544 33332222233333 23334444456678889999999999984 34
Q ss_pred cccccccCCCCccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCc
Q 037483 413 NVSETLGQVEILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCS 492 (693)
Q Consensus 413 ~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 492 (693)
.+|..+.++++|++|+|++|.++.+|..+..+++|++|+|++|.+... +. .++++++
T Consensus 238 ~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l-p~----------------------~~~~l~~ 294 (727)
T 4b8c_D 238 NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSL-PA----------------------ELGSCFQ 294 (727)
T ss_dssp CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSC-CS----------------------SGGGGTT
T ss_pred CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCcc-Ch----------------------hhcCCCC
Confidence 455566788999999999999999999999999999999999987733 22 6788899
Q ss_pred CCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCc-ccCccccCCC-CCCEEecccccc
Q 037483 493 LSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFV-TLPASISGLL-NLKELELEDCAL 551 (693)
Q Consensus 493 L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~-~L~~L~L~~n~~ 551 (693)
|+.|+|++|.++ .+|..|+.+++|++|+|++|.++ .+|..+..+. .+..|+|++|.+
T Consensus 295 L~~L~L~~N~l~--~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l 353 (727)
T 4b8c_D 295 LKYFYFFDNMVT--TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRP 353 (727)
T ss_dssp CSEEECCSSCCC--CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCEEECCCCCCC--ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcc
Confidence 999999999994 58999999999999999999999 4555554332 223477888877
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.42 E-value=7.4e-13 Score=135.55 Aligned_cols=78 Identities=12% Similarity=0.113 Sum_probs=58.7
Q ss_pred CCCCcEEEcCCCCCc--------------------ccchhhhcC--------ccccceeccCCcCceeecCC-cCCCCCC
Q 037483 337 LKCLRTLELSGCSKL--------------------KRFLEIVAS--------MEDLSELYLDGTFITKLPLS-IELLTGL 387 (693)
Q Consensus 337 l~~L~~L~l~~~~~~--------------------~~~~~~~~~--------l~~L~~L~L~~~~l~~l~~~-~~~l~~L 387 (693)
+++|++|||++|.+. ......|.+ +++|+.|+|.+ .++.++.. |..+++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 677888888887655 112345667 89999999998 88888654 7889999
Q ss_pred CEEecCCCCCCccCCCCCCCCccccccc
Q 037483 388 ELLNLNDCKNLLRLPSSIDGCFKLENVS 415 (693)
Q Consensus 388 ~~L~L~~~~~~~~lp~~~~~~~~L~~lp 415 (693)
+.|++++|.....-+..|.+|.++..+|
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~ 154 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIP 154 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEEC
T ss_pred ceEEcCCCCccccchhhhcCCCceEEec
Confidence 9999999887766667777777776665
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.39 E-value=5e-12 Score=116.67 Aligned_cols=108 Identities=21% Similarity=0.246 Sum_probs=73.4
Q ss_pred CCccEEecCCCccccCCC-ccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCeeeCCC
Q 037483 422 EILEELDISGTTIREPPS-SIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSY 500 (693)
Q Consensus 422 ~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~ 500 (693)
++|++|++++|.++++|. .+..+++|++|++++|.+....+. .+..+++|+.|++++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------------------~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDG----------------------VFDKLTKLTILYLHE 85 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT----------------------TTTTCTTCCEEECCS
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChh----------------------HccCCCccCEEECCC
Confidence 345555666665555543 345566666666666655433221 456677788888888
Q ss_pred CCCCCCCCCccCCCCCCCCEEeCCCCCCcccCcc-ccCCCCCCEEecccccce
Q 037483 501 CGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPAS-ISGLLNLKELELEDCALK 552 (693)
Q Consensus 501 n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n~~~ 552 (693)
|.++ +..+..+..+++|++|++++|.++.+|.. +..+++|++|++++|++.
T Consensus 86 N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 86 NKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCcc-ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 8874 33344577888999999999999888755 477899999999999763
No 135
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.38 E-value=1.2e-11 Score=129.56 Aligned_cols=244 Identities=12% Similarity=0.039 Sum_probs=151.2
Q ss_pred CCCCccccchhHHHHHHHHhcC-CCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc--------cceeEEEEcc--c----
Q 037483 15 TLKKLVRIDSCLEELRSLMDEG-LNDDVRMIGICGMGGLGKTTLVRAVYDLISHE--------FEGSSFLVDE--V---- 79 (693)
Q Consensus 15 ~~~~~vGr~~~~~~l~~~l~~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--------f~~~~~~~~~--~---- 79 (693)
.+..++||+++++++.+++... ..+..+.+.|+|++|+|||++|+++++.+... ....+|+... .
T Consensus 18 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 18 VFKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp HCSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 3478999999999999888652 22346789999999999999999999876443 2233444410 0
Q ss_pred ------------------C-------------CCCCeEEEEEecCCChhh---hhH-HhcCCCcCCCCceEEEEeCChH-
Q 037483 80 ------------------G-------------CNTKKVLLVIDDVVDIKQ---LEY-LVGKREWFGSGSRIIITSRDEH- 123 (693)
Q Consensus 80 ------------------~-------------~~~~~~LlvlDdv~~~~~---~~~-l~~~~~~~~~~~~iliTtR~~~- 123 (693)
+ +..++.++||||++.... .+. +.....+. .+..+|+||+...
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~ 176 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDINV 176 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTT
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCch
Confidence 0 122344999999976542 122 11111112 6788999998752
Q ss_pred -------HHHHcCCCceeeCCCCCHHHHHHHHHHhcc---cCCCCchHHHHHHHHHHHHhC---CCch-hHHHHhhhh--
Q 037483 124 -------LLKTHGVDELCEPNGLNYDEALQLLNTKAF---KTHKPLEECAKLSERVPQYAG---GLPL-ALKVLGSFL-- 187 (693)
Q Consensus 124 -------~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~---~~~~~~~~~~~~~~~i~~~~~---g~Pl-al~~~~~~l-- 187 (693)
+.... ...+.+++++.++..+++...+. ......+ +..+.+++.++ |.|. |+..+-...
T Consensus 177 ~~~l~~~l~sr~--~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~ 251 (384)
T 2qby_B 177 RDYMEPRVLSSL--GPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQL 251 (384)
T ss_dssp TTTSCHHHHHTC--CCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HhhhCHHHHhcC--CCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 12221 23899999999999999998752 2222222 23556777777 9887 433332221
Q ss_pred c----CCChHHHHHHHHHhccCCCchHHHHHHHhhccCcHhhHhHHhhhhcccC-CCCHHHHHHHHHHcCCCc------c
Q 037483 188 N----GRSTDQWRSTLERLKRDPPNKIMSILQISFDGLQDSEKKIFLDVACFFK-WKSREYVTKILEACGFSP------V 256 (693)
Q Consensus 188 ~----~~~~~~w~~~l~~l~~~~~~~~~~~l~~s~~~L~~~~~~~~~~la~f~~-~~~~~~l~~~~~~~~~~~------~ 256 (693)
. .-+.+.+..++++.. ...+..+++.|++.++.++..++.... +...+....+....|..+ .
T Consensus 252 a~~~~~i~~~~v~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 324 (384)
T 2qby_B 252 ASGGGIIRKEHVDKAIVDYE-------QERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRRFS 324 (384)
T ss_dssp TTSSSCCCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHHHH
T ss_pred hcCCCccCHHHHHHHHHHHh-------cchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHHHH
Confidence 1 235566666666542 234666788999999999888887111 101112223333333222 2
Q ss_pred chhhhhhcCCcEEEe
Q 037483 257 IGIEVLIEKSLLIVD 271 (693)
Q Consensus 257 ~~l~~L~~~sLi~~~ 271 (693)
..+..|.+.++++..
T Consensus 325 ~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 325 DIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHTTSEEEE
T ss_pred HHHHHHHhCCCEEEE
Confidence 347889999999864
No 136
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.38 E-value=8.7e-12 Score=121.80 Aligned_cols=171 Identities=15% Similarity=0.108 Sum_probs=117.8
Q ss_pred ccCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccc---------------------e
Q 037483 13 SETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFE---------------------G 71 (693)
Q Consensus 13 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---------------------~ 71 (693)
|....+++||++.++.+.+++..... .+.+.|+|++|+||||+|+++++.+...+. .
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~~~~--~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSLGRI--HHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVD 96 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHTCC--CSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSS
T ss_pred CccHHHHhCcHHHHHHHHHHHHcCCC--CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcc
Confidence 33446799999999999999976432 358999999999999999999987644221 1
Q ss_pred eEEEEccc-----------------CCCCCeEEEEEecCCCh--hhhhHHhcCCCcCCCCceEEEEeCChHHH-H-HcCC
Q 037483 72 SSFLVDEV-----------------GCNTKKVLLVIDDVVDI--KQLEYLVGKREWFGSGSRIIITSRDEHLL-K-THGV 130 (693)
Q Consensus 72 ~~~~~~~~-----------------~~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTtR~~~~~-~-~~~~ 130 (693)
...+.... ...+++.++|+||++.. ..++.+...+.....+..+|+||+..... . ....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r 176 (250)
T 1njg_A 97 LIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 176 (250)
T ss_dssp EEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTT
T ss_pred eEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHH
Confidence 12222110 13456899999999753 34555555444445678888888764311 1 1122
Q ss_pred CceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHHhhhh
Q 037483 131 DELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVLGSFL 187 (693)
Q Consensus 131 ~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 187 (693)
...+++++++.++..+++...+........ .+..+.|++.++|+|..+..+...+
T Consensus 177 ~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 177 CLQFHLKALDVEQIRHQLEHILNEEHIAHE--PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHTTCCBC--HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhccCCCCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 467899999999999999887744322221 2446789999999999988776543
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.36 E-value=1.4e-12 Score=120.24 Aligned_cols=131 Identities=19% Similarity=0.125 Sum_probs=102.0
Q ss_pred ccCCCCccEEecCCCccccCCCccccCC-CCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCee
Q 037483 418 LGQVEILEELDISGTTIREPPSSIFAIK-NLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKL 496 (693)
Q Consensus 418 l~~l~~L~~L~l~~n~i~~lp~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 496 (693)
+.++.+|++|++++|.++.+|. +..+. +|++|++++|.+... + .+..+++|+.|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~-----------------------~l~~l~~L~~L 69 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-D-----------------------GFPLLRRLKTL 69 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-C-----------------------CCCCCSSCCEE
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-c-----------------------ccccCCCCCEE
Confidence 4567789999999999988865 44444 999999999977643 1 67888999999
Q ss_pred eCCCCCCCCCCCCcc-CCCCCCCCEEeCCCCCCcccCc--cccCCCCCCEEecccccceeeccC----cccccccCCchh
Q 037483 497 DLSYCGLGEGAIPND-IGNLCSLKELYLSKNNFVTLPA--SISGLLNLKELELEDCALKLRKSD----CTIIKCIDSLKL 569 (693)
Q Consensus 497 ~ls~n~l~~~~~p~~-l~~l~~L~~L~L~~n~l~~lp~--~l~~l~~L~~L~L~~n~~~~~~~~----~~~l~~l~~l~~ 569 (693)
++++|.++. +|.. +..+++|++|++++|.++.+|. .+..+++|+.|++++|++...... ...++.|..+++
T Consensus 70 ~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 70 LVNNNRICR--IGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp ECCSSCCCE--ECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred ECCCCcccc--cCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCC
Confidence 999999953 6644 4889999999999999999987 789999999999999998533322 445556666666
Q ss_pred hhcchh
Q 037483 570 LVNNGL 575 (693)
Q Consensus 570 ~~n~~~ 575 (693)
..|...
T Consensus 148 ~~n~~~ 153 (176)
T 1a9n_A 148 QKVKLK 153 (176)
T ss_dssp EECCHH
T ss_pred CcCCHH
Confidence 655443
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.35 E-value=1.1e-11 Score=114.38 Aligned_cols=128 Identities=21% Similarity=0.280 Sum_probs=95.9
Q ss_pred cceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCcccccccccccCCCCccEEecCCCccccCCCc-cc
Q 037483 364 LSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLENVSETLGQVEILEELDISGTTIREPPSS-IF 442 (693)
Q Consensus 364 L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~lp~~-~~ 442 (693)
.+.++++++.++.+|..+ .++|++|++++|.+.+ +|. ..++.+++|++|++++|.++.+|.. +.
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~-~~~------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 73 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQS-LPH------------GVFDKLTQLTKLSLSQNQIQSLPDGVFD 73 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCC-CCT------------TTTTTCTTCSEEECCSSCCCCCCTTTTT
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccE-eCH------------HHhcCcccccEEECCCCcceEeChhHcc
Confidence 467777888888777544 3688888888875432 221 2246778888899998888888654 57
Q ss_pred cCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCeeeCCCCCCCCCCCCc-cCCCCCCCCEE
Q 037483 443 AIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPN-DIGNLCSLKEL 521 (693)
Q Consensus 443 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~-~l~~l~~L~~L 521 (693)
.+++|++|++++|.+....+. .+..+++|+.|++++|.++ + +|. .+..+++|++|
T Consensus 74 ~l~~L~~L~l~~N~l~~~~~~----------------------~~~~l~~L~~L~l~~N~l~-~-~~~~~~~~l~~L~~L 129 (177)
T 2o6r_A 74 KLTKLTILYLHENKLQSLPNG----------------------VFDKLTQLKELALDTNQLK-S-VPDGIFDRLTSLQKI 129 (177)
T ss_dssp TCTTCCEEECCSSCCCCCCTT----------------------TTTTCTTCCEEECCSSCCS-C-CCTTTTTTCTTCCEE
T ss_pred CCCccCEEECCCCCccccCHH----------------------HhhCCcccCEEECcCCcce-E-eCHHHhcCCcccCEE
Confidence 888999999998887755432 4677889999999999984 3 554 46889999999
Q ss_pred eCCCCCCcc
Q 037483 522 YLSKNNFVT 530 (693)
Q Consensus 522 ~L~~n~l~~ 530 (693)
++++|.++.
T Consensus 130 ~l~~N~~~~ 138 (177)
T 2o6r_A 130 WLHTNPWDC 138 (177)
T ss_dssp ECCSSCBCC
T ss_pred EecCCCeec
Confidence 999998874
No 139
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.35 E-value=1.2e-11 Score=129.72 Aligned_cols=249 Identities=16% Similarity=0.084 Sum_probs=151.3
Q ss_pred ccCCCCccccchhHHHHHHHHhcC-CCCCeEEEEEEcCCCchHHHHHHHHHHHHhccc---ceeEEEEcc----------
Q 037483 13 SETLKKLVRIDSCLEELRSLMDEG-LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEF---EGSSFLVDE---------- 78 (693)
Q Consensus 13 ~~~~~~~vGr~~~~~~l~~~l~~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f---~~~~~~~~~---------- 78 (693)
...+..|+||+++++++.+++... ..+..+.+.|+|++|+||||||+++++.+...+ ...+|+...
T Consensus 16 ~~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 95 (386)
T 2qby_A 16 DYIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLA 95 (386)
T ss_dssp SCCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHH
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHH
Confidence 344578999999999999998752 122467899999999999999999999876543 234444421
Q ss_pred ------------c---------------CCCCCeEEEEEecCCChh------hhhHHhcCCCc-CCCCceEEEEeCChHH
Q 037483 79 ------------V---------------GCNTKKVLLVIDDVVDIK------QLEYLVGKREW-FGSGSRIIITSRDEHL 124 (693)
Q Consensus 79 ------------~---------------~~~~~~~LlvlDdv~~~~------~~~~l~~~~~~-~~~~~~iliTtR~~~~ 124 (693)
. ...+++.++|+|+++... .+..+...... ...+..+|+||+....
T Consensus 96 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~ 175 (386)
T 2qby_A 96 DLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKF 175 (386)
T ss_dssp HHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGG
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCCh
Confidence 0 023458999999996643 23333222211 1345677888886543
Q ss_pred HHHcC-------CCceeeCCCCCHHHHHHHHHHhcc---cCCCCchHHHHHHHHHHHHhC---CCchhHHHHhhhh---c
Q 037483 125 LKTHG-------VDELCEPNGLNYDEALQLLNTKAF---KTHKPLEECAKLSERVPQYAG---GLPLALKVLGSFL---N 188 (693)
Q Consensus 125 ~~~~~-------~~~~~~l~~L~~~ea~~l~~~~~~---~~~~~~~~~~~~~~~i~~~~~---g~Plal~~~~~~l---~ 188 (693)
..... ....+.+++++.++..+++...+. ...... .+..+.+++.++ |.|..+..+.... .
T Consensus 176 ~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a 252 (386)
T 2qby_A 176 VDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSGEIA 252 (386)
T ss_dssp GGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 22111 124789999999999999988642 112222 233556667777 9998444332221 1
Q ss_pred ---C---CChHHHHHHHHHhccCCCchHHHHHHHhhccCcHhhHhHHhhhhcccC-C---CCHHHH----HHHHHHcCCC
Q 037483 189 ---G---RSTDQWRSTLERLKRDPPNKIMSILQISFDGLQDSEKKIFLDVACFFK-W---KSREYV----TKILEACGFS 254 (693)
Q Consensus 189 ---~---~~~~~w~~~l~~l~~~~~~~~~~~l~~s~~~L~~~~~~~~~~la~f~~-~---~~~~~l----~~~~~~~~~~ 254 (693)
+ -+.+.+..++.... ...+..++..+++.++.++..++.... + ...+.+ ..+....|..
T Consensus 253 ~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~ 325 (386)
T 2qby_A 253 ERMKDTKVKEEYVYMAKEEIE-------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVE 325 (386)
T ss_dssp HHTTCSSCCHHHHHHHHHHHH-------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCC
T ss_pred HhcCCCccCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCC
Confidence 1 24445555544432 235666778899999999888885322 1 223322 2223333332
Q ss_pred c------cchhhhhhcCCcEEEe
Q 037483 255 P------VIGIEVLIEKSLLIVD 271 (693)
Q Consensus 255 ~------~~~l~~L~~~sLi~~~ 271 (693)
+ ...++.|.+.++|+..
T Consensus 326 ~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 326 AVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp CCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCHHHHHHHHHHHHhCCCEEEE
Confidence 2 3447888889998764
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.33 E-value=6.5e-15 Score=138.90 Aligned_cols=102 Identities=23% Similarity=0.219 Sum_probs=50.4
Q ss_pred ccCCCCccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCeee
Q 037483 418 LGQVEILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLD 497 (693)
Q Consensus 418 l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 497 (693)
+.++++|++|++++|.++.+|..+..+++|++|++++|.+.... .+..+++|+.|+
T Consensus 66 ~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~------------------------~~~~l~~L~~L~ 121 (198)
T 1ds9_A 66 LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS------------------------GIEKLVNLRVLY 121 (198)
T ss_dssp HHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH------------------------HHHHHHHSSEEE
T ss_pred cccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC------------------------ccccCCCCCEEE
Confidence 34444455555555555555544444455555555555433210 233445555555
Q ss_pred CCCCCCCCCCCC--ccCCCCCCCCEEeCCCCCCccc-Cc----------cccCCCCCCEEe
Q 037483 498 LSYCGLGEGAIP--NDIGNLCSLKELYLSKNNFVTL-PA----------SISGLLNLKELE 545 (693)
Q Consensus 498 ls~n~l~~~~~p--~~l~~l~~L~~L~L~~n~l~~l-p~----------~l~~l~~L~~L~ 545 (693)
+++|.++. ++ ..+..+++|++|++++|.++.. |. .+..+++|+.|+
T Consensus 122 l~~N~i~~--~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 122 MSNNKITN--WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp ESEEECCC--HHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCCcCCc--hhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 55555532 22 2455566666666666655532 21 145566666665
No 141
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.33 E-value=4.1e-11 Score=125.82 Aligned_cols=252 Identities=15% Similarity=0.135 Sum_probs=152.7
Q ss_pred cCCCCccccchhHHHHHHHHhcC---CCCCeEEEEEEcCCCchHHHHHHHHHHHHhccc-ceeEEEEccc----------
Q 037483 14 ETLKKLVRIDSCLEELRSLMDEG---LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEF-EGSSFLVDEV---------- 79 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~---------- 79 (693)
+.++.++||+++++++.+++... ..+..+.+.|+|++|+||||+|+++++...... ...+++....
T Consensus 14 ~~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 14 YVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp CCCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHH
Confidence 34478999999999999998762 222334899999999999999999999876542 2344444211
Q ss_pred ------------C---------------CCCCeEEEEEecCCCh--hhhhHHhcCCCcCC----CCceEEEEeCChHHHH
Q 037483 80 ------------G---------------CNTKKVLLVIDDVVDI--KQLEYLVGKREWFG----SGSRIIITSRDEHLLK 126 (693)
Q Consensus 80 ------------~---------------~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~----~~~~iliTtR~~~~~~ 126 (693)
+ ..+++.++|||+++.. .....+........ .+..+|++|+......
T Consensus 94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 94 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred HHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 0 1145889999999765 33444443332211 4677888888764332
Q ss_pred HcC-------CCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHh---------CCCchhHHHHhhhhc--
Q 037483 127 THG-------VDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYA---------GGLPLALKVLGSFLN-- 188 (693)
Q Consensus 127 ~~~-------~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~---------~g~Plal~~~~~~l~-- 188 (693)
... ....+.+++++.++..+++...+........-..+..+.+++.+ +|.|..+..+.....
T Consensus 174 ~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~ 253 (389)
T 1fnn_A 174 NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYA 253 (389)
T ss_dssp TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHH
T ss_pred HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHH
Confidence 221 12368999999999999998876320000111234567788888 798865554433211
Q ss_pred ----C---CChHHHHHHHHHhccCCCchHHHHHHHhhccCcHhhHhHHhhhhccc---C--CCCHHHHHHHH----HHcC
Q 037483 189 ----G---RSTDQWRSTLERLKRDPPNKIMSILQISFDGLQDSEKKIFLDVACFF---K--WKSREYVTKIL----EACG 252 (693)
Q Consensus 189 ----~---~~~~~w~~~l~~l~~~~~~~~~~~l~~s~~~L~~~~~~~~~~la~f~---~--~~~~~~l~~~~----~~~~ 252 (693)
+ -+.+....+....... . +...+..|+..++.++..++.+. . ....+.+...+ ...+
T Consensus 254 a~~~~~~~i~~~~v~~~~~~~~~~---~----~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 326 (389)
T 1fnn_A 254 AQQNGRKHIAPEDVRKSSKEVLFG---I----SEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYG 326 (389)
T ss_dssp HHHTTCSSCCHHHHHHHHHHHSCC---C----CHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTT
T ss_pred HHHhCCCCcCHHHHHHHHHHHhhh---h----HHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcC
Confidence 1 1233333333333221 1 12335678888888888887654 2 23444443332 2223
Q ss_pred CCc------cchhhhhhcCCcEEEeC
Q 037483 253 FSP------VIGIEVLIEKSLLIVDE 272 (693)
Q Consensus 253 ~~~------~~~l~~L~~~sLi~~~~ 272 (693)
..+ ...+..|.+.++|....
T Consensus 327 ~~~~~~~~~~~~l~~L~~~gli~~~~ 352 (389)
T 1fnn_A 327 ERPRVHSQLWSYLNDLREKGIVETRQ 352 (389)
T ss_dssp CCCCCHHHHHHHHHHHHHTTSSEEEE
T ss_pred CCCCCHHHHHHHHHHHHhCCCeEEee
Confidence 222 24478899999998753
No 142
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.31 E-value=6.1e-11 Score=124.39 Aligned_cols=247 Identities=11% Similarity=0.025 Sum_probs=149.7
Q ss_pred cCCCCccccchhHHHHHHHHhcC-CCCCeEEEEEEcCCCchHHHHHHHHHHHHhccc------ceeEEEEccc-------
Q 037483 14 ETLKKLVRIDSCLEELRSLMDEG-LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEF------EGSSFLVDEV------- 79 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~------- 79 (693)
..++.++||+++++++.+++... ..+..+.+.|+|++|+|||++|+++++.....+ ...+++....
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 44588999999999999998653 123567899999999999999999998764431 1233443210
Q ss_pred ------------------------------CCCCCeEEEEEecCCChhh----hhHH---hcCCCcC--CCCceEEEEeC
Q 037483 80 ------------------------------GCNTKKVLLVIDDVVDIKQ----LEYL---VGKREWF--GSGSRIIITSR 120 (693)
Q Consensus 80 ------------------------------~~~~~~~LlvlDdv~~~~~----~~~l---~~~~~~~--~~~~~iliTtR 120 (693)
...+++.++|||+++.... .+.+ ....... ..+..+|.||+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~ 175 (387)
T 2v1u_A 96 ASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITN 175 (387)
T ss_dssp HHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECS
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEEC
Confidence 1245689999999987542 1222 2211111 34667888887
Q ss_pred ChH--------HHHHcCCCceeeCCCCCHHHHHHHHHHhcc---cCCCCchHHHHHHHHHHHHhC---CCchhHHHHh-h
Q 037483 121 DEH--------LLKTHGVDELCEPNGLNYDEALQLLNTKAF---KTHKPLEECAKLSERVPQYAG---GLPLALKVLG-S 185 (693)
Q Consensus 121 ~~~--------~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~---~~~~~~~~~~~~~~~i~~~~~---g~Plal~~~~-~ 185 (693)
... +..... ...+.+++++.++..+++...+. ...... .+..+.++++++ |.|..+..+. .
T Consensus 176 ~~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l~~ 251 (387)
T 2v1u_A 176 SLGFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLLRV 251 (387)
T ss_dssp CSTTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred CCchHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 652 222111 24789999999999999988753 211211 123566777787 9994433322 2
Q ss_pred hh--c---C---CChHHHHHHHHHhccCCCchHHHHHHHhhccCcHhhHhHHhhhhcccCCC---CHHHHH----HHHHH
Q 037483 186 FL--N---G---RSTDQWRSTLERLKRDPPNKIMSILQISFDGLQDSEKKIFLDVACFFKWK---SREYVT----KILEA 250 (693)
Q Consensus 186 ~l--~---~---~~~~~w~~~l~~l~~~~~~~~~~~l~~s~~~L~~~~~~~~~~la~f~~~~---~~~~l~----~~~~~ 250 (693)
.. . + -+.+.+..++.... ...+.-++..+++.++..+..++....+. ..+.+. .+...
T Consensus 252 a~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (387)
T 2v1u_A 252 AGEIAERRREERVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTST 324 (387)
T ss_dssp HHHHHHHTTCSCBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHh
Confidence 11 1 1 24455666555432 23456678899999999888887543322 233222 22333
Q ss_pred cCCCc------cchhhhhhcCCcEEEe
Q 037483 251 CGFSP------VIGIEVLIEKSLLIVD 271 (693)
Q Consensus 251 ~~~~~------~~~l~~L~~~sLi~~~ 271 (693)
.|..+ ...++.|...++++..
T Consensus 325 ~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 325 LGLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 33322 2347778888888764
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.30 E-value=1.4e-14 Score=136.57 Aligned_cols=134 Identities=21% Similarity=0.261 Sum_probs=109.0
Q ss_pred CCCCEEecCCCCCCccCCCCCCCCcccccccccccCCCCccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCCc
Q 037483 385 TGLELLNLNDCKNLLRLPSSIDGCFKLENVSETLGQVEILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSASW 464 (693)
Q Consensus 385 ~~L~~L~L~~~~~~~~lp~~~~~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~ 464 (693)
.+++.++++.+.+.+.+| .++.+|..++.+++|++|++++|.++.+| .+..+++|++|++++|.+.....
T Consensus 18 ~~l~~l~l~~~~l~~~~~-------~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~-- 87 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIP-------PIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIEN-- 87 (198)
T ss_dssp TCCCCTTCSEEECCBCCT-------TCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSS--
T ss_pred ccccCcchheeEeccccC-------cHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccc--
Confidence 344555555554444433 56777888999999999999999999998 89999999999999997663311
Q ss_pred cccccccccCCCCchhhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCc--cccCCCCCC
Q 037483 465 HLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPA--SISGLLNLK 542 (693)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~--~l~~l~~L~ 542 (693)
.+..+++|+.|++++|.++. +| .+..+++|++|++++|.++.++. .+..+++|+
T Consensus 88 ---------------------~~~~~~~L~~L~L~~N~l~~--l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~ 143 (198)
T 1ds9_A 88 ---------------------LDAVADTLEELWISYNQIAS--LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLE 143 (198)
T ss_dssp ---------------------HHHHHHHCSEEEEEEEECCC--HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCS
T ss_pred ---------------------hhhcCCcCCEEECcCCcCCc--CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCC
Confidence 44556899999999999954 66 68889999999999999997764 789999999
Q ss_pred EEecccccce
Q 037483 543 ELELEDCALK 552 (693)
Q Consensus 543 ~L~L~~n~~~ 552 (693)
+|++++|++.
T Consensus 144 ~L~l~~N~l~ 153 (198)
T 1ds9_A 144 DLLLAGNPLY 153 (198)
T ss_dssp EEEECSCHHH
T ss_pred EEEecCCccc
Confidence 9999999984
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.28 E-value=2.4e-11 Score=111.04 Aligned_cols=103 Identities=20% Similarity=0.245 Sum_probs=87.0
Q ss_pred ccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCeeeCCCCCC
Q 037483 424 LEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCGL 503 (693)
Q Consensus 424 L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l 503 (693)
.+.+++++|.++.+|..+. ++|++|++++|.+....+. .+.++++|+.|+|++|.+
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~----------------------~~~~l~~L~~L~Ls~N~l 66 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPG----------------------VFDRLTQLTRLDLDNNQL 66 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTT----------------------TTTTCTTCSEEECCSSCC
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChh----------------------hhcCcccCCEEECCCCCc
Confidence 5788999999999987764 8899999999988776443 678889999999999999
Q ss_pred CCCCCCccCCCCCCCCEEeCCCCCCcccCc-cccCCCCCCEEecccccc
Q 037483 504 GEGAIPNDIGNLCSLKELYLSKNNFVTLPA-SISGLLNLKELELEDCAL 551 (693)
Q Consensus 504 ~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n~~ 551 (693)
+ +..+..+..+++|++|+|++|+++.+|. .+..+++|++|+|++|++
T Consensus 67 ~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 67 T-VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp C-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred C-ccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 4 3334457899999999999999998885 588999999999999987
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.27 E-value=3.3e-11 Score=110.43 Aligned_cols=102 Identities=18% Similarity=0.258 Sum_probs=85.8
Q ss_pred cEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCeeeCCCCCCC
Q 037483 425 EELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLG 504 (693)
Q Consensus 425 ~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~ 504 (693)
+.+++++|.++.+|..+. ++|++|++++|.+....+. .+.++++|+.|+|++|.++
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~----------------------~~~~l~~L~~L~Ls~N~l~ 70 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPG----------------------VFDHLVNLQQLYFNSNKLT 70 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTT----------------------TTTTCTTCCEEECCSSCCC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHH----------------------HhcCCcCCCEEECCCCCCC
Confidence 678889998888887764 8899999999987766443 6788899999999999994
Q ss_pred CCCCCc-cCCCCCCCCEEeCCCCCCcccCcc-ccCCCCCCEEecccccce
Q 037483 505 EGAIPN-DIGNLCSLKELYLSKNNFVTLPAS-ISGLLNLKELELEDCALK 552 (693)
Q Consensus 505 ~~~~p~-~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n~~~ 552 (693)
. +|. .+..+++|++|+|++|.++.+|.. +..+++|++|+|++|++.
T Consensus 71 ~--i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 71 A--IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp C--CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred c--cChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 3 555 468999999999999999988865 889999999999999873
No 146
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.27 E-value=6.2e-11 Score=113.85 Aligned_cols=168 Identities=13% Similarity=0.061 Sum_probs=112.5
Q ss_pred ccCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc-cceeE-EEEccc-----------
Q 037483 13 SETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHE-FEGSS-FLVDEV----------- 79 (693)
Q Consensus 13 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~-~~~~~~----------- 79 (693)
|....+++||++.++++.+++..... +.+.|+|++|+|||++|+++++.+... +.... .+....
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~~~---~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVERKNI---PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKI 89 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTCC---CCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHH
T ss_pred CCCHHHHcCcHHHHHHHHHHHhCCCC---CeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHH
Confidence 34456799999999999999986432 339999999999999999999876433 22222 222110
Q ss_pred --------CCCCCeEEEEEecCCCh--hhhhHHhcCCCcCCCCceEEEEeCChHHH--HHcCCCceeeCCCCCHHHHHHH
Q 037483 80 --------GCNTKKVLLVIDDVVDI--KQLEYLVGKREWFGSGSRIIITSRDEHLL--KTHGVDELCEPNGLNYDEALQL 147 (693)
Q Consensus 80 --------~~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTtR~~~~~--~~~~~~~~~~l~~L~~~ea~~l 147 (693)
....++.++|+||++.. ...+.+...+.....+.++|+||+..... ........+++++++.++..++
T Consensus 90 ~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~ 169 (226)
T 2chg_A 90 KEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKR 169 (226)
T ss_dssp HHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHH
T ss_pred HHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHH
Confidence 01367899999999764 33444544444445678889998875311 1112234789999999999999
Q ss_pred HHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHHhh
Q 037483 148 LNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVLGS 185 (693)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 185 (693)
+...+.......+ .+..+.+++.++|+|..+..+..
T Consensus 170 l~~~~~~~~~~~~--~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 170 LLEICEKEGVKIT--EDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp HHHHHHHHTCCBC--HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHHHHH
Confidence 9887643222211 23466788999999986555443
No 147
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.23 E-value=8.5e-13 Score=147.07 Aligned_cols=199 Identities=21% Similarity=0.157 Sum_probs=107.6
Q ss_pred CcEEEcCCCCCcc--cchhhhcCccccceeccCCcCcee-----ecCCcCCCCCCCEEecCCCCCCccCCCCCCCCcccc
Q 037483 340 LRTLELSGCSKLK--RFLEIVASMEDLSELYLDGTFITK-----LPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLE 412 (693)
Q Consensus 340 L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~L~~~~l~~-----l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~ 412 (693)
|++|++++|.... .++....++++|++|+|++|.++. ++.....+++|++|++++|...+. ...
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~---------~~~ 210 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKI---------SPK 210 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSC---------CHH
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCcc---------CHH
Confidence 7777777665221 123334456777777777776542 222234566777777776643211 112
Q ss_pred cccccccCCCCccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCCccc--cccccccCCC--CchhhhhhcccC
Q 037483 413 NVSETLGQVEILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSASWHL--HFPFNLMGKS--LYPVALMLFSLS 488 (693)
Q Consensus 413 ~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~l~ 488 (693)
.++..+.++++|++|++++|.+.++|..+..+++|+.|+++++........... ....++.... .......+..+.
T Consensus 211 ~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~ 290 (592)
T 3ogk_B 211 DLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFP 290 (592)
T ss_dssp HHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGG
T ss_pred HHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHh
Confidence 344556678889999999988888888888889999998875432211100000 0000000000 000111222445
Q ss_pred CCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCc--ccCccccCCCCCCEEeccc
Q 037483 489 GLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFV--TLPASISGLLNLKELELED 548 (693)
Q Consensus 489 ~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~ 548 (693)
.+++|++|++++|.++...++..+..+++|++|+++ +.+. .++.....+++|++|++++
T Consensus 291 ~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~ 351 (592)
T 3ogk_B 291 FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIER 351 (592)
T ss_dssp GGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred hcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeec
Confidence 566677777777665433333335666777777776 3333 3343345567777777773
No 148
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.23 E-value=2.3e-13 Score=151.73 Aligned_cols=200 Identities=13% Similarity=-0.027 Sum_probs=95.3
Q ss_pred CCCCcEEEcCCCCCc----ccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCcccc
Q 037483 337 LKCLRTLELSGCSKL----KRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLE 412 (693)
Q Consensus 337 l~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~ 412 (693)
+++|++|++++|... ..++..+.++++|++|++++|.+..++..+..+++|+.|+++.+...... .
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~----------~ 260 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGM----------P 260 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTC----------T
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccch----------H
Confidence 444555555544432 22333344445555555555544444444444555555555432111000 0
Q ss_pred cccccccCCCCccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCCc-----cccccccccCCCCchhhhhhccc
Q 037483 413 NVSETLGQVEILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSASW-----HLHFPFNLMGKSLYPVALMLFSL 487 (693)
Q Consensus 413 ~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l 487 (693)
..+..+..+++|+.|+++++....+|..+..+++|++|++++|.+....... .....+.+. ............
T Consensus 261 ~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~--~~~~~~~l~~~~ 338 (592)
T 3ogk_B 261 EKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR--NVIGDRGLEVLA 338 (592)
T ss_dssp TSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE--GGGHHHHHHHHH
T ss_pred HHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc--CccCHHHHHHHH
Confidence 1112334455555555555544445555555556666666655522110000 000000000 000001112233
Q ss_pred CCCCcCCeeeCCC-----------CCCCCCCCCccCCCCCCCCEEeCCCCCCc-ccCccccC-CCCCCEEeccc
Q 037483 488 SGLCSLSKLDLSY-----------CGLGEGAIPNDIGNLCSLKELYLSKNNFV-TLPASISG-LLNLKELELED 548 (693)
Q Consensus 488 ~~l~~L~~L~ls~-----------n~l~~~~~p~~l~~l~~L~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~ 548 (693)
..+++|++|++++ |.++...++.....+++|++|+++.|.++ ..+..+.. +++|+.|++++
T Consensus 339 ~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~ 412 (592)
T 3ogk_B 339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVL 412 (592)
T ss_dssp HHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEE
T ss_pred HhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEee
Confidence 5677888888883 45533233333456888999999888887 33344544 88899999973
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.16 E-value=2.3e-10 Score=104.38 Aligned_cols=87 Identities=20% Similarity=0.214 Sum_probs=54.7
Q ss_pred CCccEEecCCCccccC-CCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCeeeCCC
Q 037483 422 EILEELDISGTTIREP-PSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSY 500 (693)
Q Consensus 422 ~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~ 500 (693)
++|++|++++|.++++ |..+..+++|++|++++|.+....+. .+.++++|+.|+|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~----------------------~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAG----------------------VFDKLTQLTQLSLND 87 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT----------------------TTTTCTTCCEEECCS
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChh----------------------hccCCCCCCEEECCC
Confidence 3455556666666555 34455666666666666655544322 456667777777777
Q ss_pred CCCCCCCCCccCCCCCCCCEEeCCCCCCccc
Q 037483 501 CGLGEGAIPNDIGNLCSLKELYLSKNNFVTL 531 (693)
Q Consensus 501 n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~l 531 (693)
|.++. ..+..+..+++|++|+|++|.++..
T Consensus 88 N~l~~-~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKS-IPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCC-CCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCE-eCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 77732 2334577888888888888877643
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.15 E-value=2.6e-10 Score=104.47 Aligned_cols=88 Identities=25% Similarity=0.295 Sum_probs=53.8
Q ss_pred CCccEEecCCCccccC-CCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCeeeCCC
Q 037483 422 EILEELDISGTTIREP-PSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSY 500 (693)
Q Consensus 422 ~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~ 500 (693)
++|++|++++|.++++ |..+..+++|++|+|++|.+....+. .+.++++|+.|+|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~----------------------~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTG----------------------VFDKLTQLTQLDLND 90 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----------------------TTTTCTTCCEEECCS
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChh----------------------HhCCcchhhEEECCC
Confidence 3455555555555555 33455555666666665555443221 355667777777777
Q ss_pred CCCCCCCCCc-cCCCCCCCCEEeCCCCCCcccCc
Q 037483 501 CGLGEGAIPN-DIGNLCSLKELYLSKNNFVTLPA 533 (693)
Q Consensus 501 n~l~~~~~p~-~l~~l~~L~~L~L~~n~l~~lp~ 533 (693)
|.++. +|. .+..+++|++|+|++|.+...+.
T Consensus 91 N~l~~--l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKS--IPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCC--CCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred Cccce--eCHHHhccccCCCEEEeCCCCcccccc
Confidence 77732 444 47788888888888888775554
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.14 E-value=1.4e-12 Score=134.99 Aligned_cols=188 Identities=19% Similarity=0.179 Sum_probs=114.8
Q ss_pred CCCCcEEEcCCCCCcccchhhhc-----CccccceeccCCcCcee--ecCCcCCCCCCCEEecCCCCCCccCCCCCCCCc
Q 037483 337 LKCLRTLELSGCSKLKRFLEIVA-----SMEDLSELYLDGTFITK--LPLSIELLTGLELLNLNDCKNLLRLPSSIDGCF 409 (693)
Q Consensus 337 l~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~L~~~~l~~--l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~ 409 (693)
+++|++|++++|.+.......+. ..++|++|+|++|.++. +......+++|+.|+|++|.+...-
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~-------- 142 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEA-------- 142 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHH--------
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHH--------
Confidence 45788999999886554333332 23689999999998863 2222234568899999988543321
Q ss_pred ccccccccc-cCCCCccEEecCCCcccc-----CCCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhh
Q 037483 410 KLENVSETL-GQVEILEELDISGTTIRE-----PPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALM 483 (693)
Q Consensus 410 ~L~~lp~~l-~~l~~L~~L~l~~n~i~~-----lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (693)
...+...+ ...++|++|+|++|.++. ++..+..+++|++|+|++|.+... ....+
T Consensus 143 -~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~------------------g~~~L 203 (372)
T 3un9_A 143 -CKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDE------------------GLELL 203 (372)
T ss_dssp -HHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHH------------------HHHHH
T ss_pred -HHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcH------------------HHHHH
Confidence 11222223 245778999999998864 344556788899999988865432 12223
Q ss_pred hcccCCCCcCCeeeCCCCCCCCC---CCCccCCCCCCCCEEeCCCCCCcccC-cccc---CCC--CCCEEe--cccccc
Q 037483 484 LFSLSGLCSLSKLDLSYCGLGEG---AIPNDIGNLCSLKELYLSKNNFVTLP-ASIS---GLL--NLKELE--LEDCAL 551 (693)
Q Consensus 484 ~~~l~~l~~L~~L~ls~n~l~~~---~~p~~l~~l~~L~~L~L~~n~l~~lp-~~l~---~l~--~L~~L~--L~~n~~ 551 (693)
...+...++|+.|+|++|.+++. .++..+..+++|++|+|++|.|+... ..+. ... .|+.+. +..|.+
T Consensus 204 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~ 282 (372)
T 3un9_A 204 AAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV 282 (372)
T ss_dssp HHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----C
T ss_pred HHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCcc
Confidence 33566677888999998888432 13334456688888999988887321 1222 222 166666 666554
No 152
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.14 E-value=7.2e-10 Score=113.03 Aligned_cols=166 Identities=16% Similarity=0.153 Sum_probs=109.6
Q ss_pred cCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc-cce-eEEEEccc------------
Q 037483 14 ETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHE-FEG-SSFLVDEV------------ 79 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~-~~~~~~~~------------ 79 (693)
....+++|++..++.+.+++..+.. +.+.|+|++|+|||++|+.+++.+... +.. .+.+....
T Consensus 18 ~~~~~~~g~~~~~~~l~~~l~~~~~---~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 94 (323)
T 1sxj_B 18 QVLSDIVGNKETIDRLQQIAKDGNM---PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIK 94 (323)
T ss_dssp SSGGGCCSCTHHHHHHHHHHHSCCC---CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHH
T ss_pred CCHHHHHCCHHHHHHHHHHHHcCCC---CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHHHHHH
Confidence 3346799999999999999976432 238999999999999999999876332 221 22222110
Q ss_pred -------CC-CCCeEEEEEecCCCh--hhhhHHhcCCCcCCCCceEEEEeCChHH--HHHcCCCceeeCCCCCHHHHHHH
Q 037483 80 -------GC-NTKKVLLVIDDVVDI--KQLEYLVGKREWFGSGSRIIITSRDEHL--LKTHGVDELCEPNGLNYDEALQL 147 (693)
Q Consensus 80 -------~~-~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTtR~~~~--~~~~~~~~~~~l~~L~~~ea~~l 147 (693)
.. .+++.++|+||++.. ...+.+...+....+++++|+||+...- .........+++++++.++..++
T Consensus 95 ~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~ 174 (323)
T 1sxj_B 95 HFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKR 174 (323)
T ss_dssp HHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHH
T ss_pred HHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHH
Confidence 12 445899999999764 2344444433334567888888876431 11123345899999999999999
Q ss_pred HHHhcccCCCCchHHHHHHHHHHHHhCCCchh-HHHHh
Q 037483 148 LNTKAFKTHKPLEECAKLSERVPQYAGGLPLA-LKVLG 184 (693)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla-l~~~~ 184 (693)
+...+.......+ .+....+++.++|.|.. +..+.
T Consensus 175 l~~~~~~~~~~~~--~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 175 LLQIIKLEDVKYT--NDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp HHHHHHHHTCCBC--HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHHHHH
Confidence 9887632222211 23467789999999954 44443
No 153
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.09 E-value=1.1e-12 Score=146.14 Aligned_cols=59 Identities=14% Similarity=0.047 Sum_probs=34.0
Q ss_pred CCCcCCeeeCCC---------CCCCCCCCCccCCCCCCCCEEeCCCCCCcc-cCccc-cCCCCCCEEecc
Q 037483 489 GLCSLSKLDLSY---------CGLGEGAIPNDIGNLCSLKELYLSKNNFVT-LPASI-SGLLNLKELELE 547 (693)
Q Consensus 489 ~l~~L~~L~ls~---------n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~-lp~~l-~~l~~L~~L~L~ 547 (693)
.+++|+.|++++ +.+++..+......+++|++|.++.|.++. .+..+ ..+++|+.|+++
T Consensus 336 ~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~ 405 (594)
T 2p1m_B 336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405 (594)
T ss_dssp HCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred hCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence 467777777733 333221121122346778888777777762 22233 357888888888
No 154
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.08 E-value=1.3e-10 Score=118.85 Aligned_cols=202 Identities=16% Similarity=0.110 Sum_probs=104.0
Q ss_pred CCCCcEEEcCCCCCcccchhhhcC-ccccceeccCCcCce--eecCCcCCCCCCCEEecCCCCCCccCC-CCCCC-----
Q 037483 337 LKCLRTLELSGCSKLKRFLEIVAS-MEDLSELYLDGTFIT--KLPLSIELLTGLELLNLNDCKNLLRLP-SSIDG----- 407 (693)
Q Consensus 337 l~~L~~L~l~~~~~~~~~~~~~~~-l~~L~~L~L~~~~l~--~l~~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~----- 407 (693)
+++++.|.++++-....+ ..+.. +++|+.|+|++|.+. ..+. +.++.+..+.+..+ .+| ..|.+
T Consensus 24 ~~~l~~L~l~g~i~~~~~-~~l~~~l~~L~~LdLs~n~i~~~~~~~--~~~~~~~~~~~~~~----~I~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDF-RHLRDEFPSLKVLDISNAEIKMYSGKA--GTYPNGKFYIYMAN----FVPAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEEECHHHH-HHHHHSCTTCCEEEEEEEEECCEEESS--SSSGGGCCEEECTT----EECTTTTEEEETTE
T ss_pred hCceeEEEEeccccHHHH-HHHHHhhccCeEEecCcceeEEecCcc--cccccccccccccc----ccCHHHhccccccc
Confidence 567889999874222222 23333 788999999999888 2221 11111222222222 111 12222
Q ss_pred ---Ccccccc---------c-ccccCCCCccEEecCCCccccCC-CccccCCCCCEEEccCCCC----CCCCCCcc----
Q 037483 408 ---CFKLENV---------S-ETLGQVEILEELDISGTTIREPP-SSIFAIKNLKKLSFSGCSG----PPSSASWH---- 465 (693)
Q Consensus 408 ---~~~L~~l---------p-~~l~~l~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~~~~----~~~~~~~~---- 465 (693)
|++|+.+ + ..|.++++|+.|++++|.+..++ ..+..+.++..+.+..... ........
T Consensus 97 ~~g~~~L~~l~L~~~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 97 TKGKQTLEKVILSEKIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp EEECTTCCC-CBCTTCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred ccccCCCcEEECCccccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 3433322 1 34677788888888888877663 4455555555555443110 00000000
Q ss_pred -cc----------c----------ccccc----CCCCchhhhhhcccCCCCcCCeeeCCCCCCCCCCCC-ccCCCCCCCC
Q 037483 466 -LH----------F----------PFNLM----GKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEGAIP-NDIGNLCSLK 519 (693)
Q Consensus 466 -~~----------~----------~~~~~----~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p-~~l~~l~~L~ 519 (693)
.. . ..++. .+.+.. .........+++|+.|++++|.++. +| ..|.+|++|+
T Consensus 177 ~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~--I~~~aF~~~~~L~ 253 (329)
T 3sb4_A 177 PLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATT--IPDFTFAQKKYLL 253 (329)
T ss_dssp CCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCE--ECTTTTTTCTTCC
T ss_pred ccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcce--ecHhhhhCCCCCC
Confidence 00 0 00000 000000 0000011236778888888877733 44 3577788888
Q ss_pred EEeCCCCCCcccC-ccccCCCCCC-EEecccc
Q 037483 520 ELYLSKNNFVTLP-ASISGLLNLK-ELELEDC 549 (693)
Q Consensus 520 ~L~L~~n~l~~lp-~~l~~l~~L~-~L~L~~n 549 (693)
+|+|.+| ++.++ ..|.+|++|+ .|++.++
T Consensus 254 ~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~~ 284 (329)
T 3sb4_A 254 KIKLPHN-LKTIGQRVFSNCGRLAGTLELPAS 284 (329)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEEEECTT
T ss_pred EEECCcc-cceehHHHhhCChhccEEEEEccc
Confidence 8888876 77666 4567788888 8888773
No 155
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.06 E-value=3.8e-11 Score=133.78 Aligned_cols=202 Identities=19% Similarity=0.189 Sum_probs=115.1
Q ss_pred CCCCCcEEEcCCCCCccc--chhhhcCccccceeccCCcCcee-----ecCCcCCCCCCCEEecCCCCCCccCCCCCCCC
Q 037483 336 SLKCLRTLELSGCSKLKR--FLEIVASMEDLSELYLDGTFITK-----LPLSIELLTGLELLNLNDCKNLLRLPSSIDGC 408 (693)
Q Consensus 336 ~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~L~~~~l~~-----l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~ 408 (693)
.+++|++|++++|...+. ++..+.++++|++|++++|.++. ++.....+++|++|++++|. +.++
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~------ 199 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVS------ 199 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCC------
T ss_pred hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCC------
Confidence 477888888888754433 45555678888888888887653 33333467788888888874 1111
Q ss_pred cccccccccccCCCCccEEecCCC-ccccCCCccccCCCCCEEEccCCCCCCCCCCcc--------ccccccccCCCCch
Q 037483 409 FKLENVSETLGQVEILEELDISGT-TIREPPSSIFAIKNLKKLSFSGCSGPPSSASWH--------LHFPFNLMGKSLYP 479 (693)
Q Consensus 409 ~~L~~lp~~l~~l~~L~~L~l~~n-~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 479 (693)
...++..+.++++|++|++++| .+..+|..+..+++|+.|+++.|.......... ......+.+.....
T Consensus 200 --~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~ 277 (594)
T 2p1m_B 200 --FSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV 277 (594)
T ss_dssp --HHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCC
T ss_pred --HHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccc
Confidence 1122223345678888888887 555666667778888888876553210000000 00000000000000
Q ss_pred hhhhhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCc--ccCccccCCCCCCEEeccc
Q 037483 480 VALMLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFV--TLPASISGLLNLKELELED 548 (693)
Q Consensus 480 ~~~~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~ 548 (693)
...++..+..+++|++|++++|.++...++..+..+++|++|++++| ++ .++.....+++|++|++.+
T Consensus 278 ~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~ 347 (594)
T 2p1m_B 278 PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFP 347 (594)
T ss_dssp GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEEC
T ss_pred hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEec
Confidence 01111233356788888888888643333444567888888888877 44 3333334578888888843
No 156
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.04 E-value=6.1e-12 Score=130.22 Aligned_cols=161 Identities=20% Similarity=0.214 Sum_probs=115.9
Q ss_pred ccccceeccCCcCcee-----ecCCcC-CCCCCCEEecCCCCCCccCCCCCCCCcccccccccccCCCCccEEecCCCcc
Q 037483 361 MEDLSELYLDGTFITK-----LPLSIE-LLTGLELLNLNDCKNLLRLPSSIDGCFKLENVSETLGQVEILEELDISGTTI 434 (693)
Q Consensus 361 l~~L~~L~L~~~~l~~-----l~~~~~-~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~lp~~l~~l~~L~~L~l~~n~i 434 (693)
+++|++|+|++|.++. +...+. ..++|+.|+|++|.+...-. ..+ ...+++|++|+|++|.+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~---------~~l---~~~L~~L~~L~Ls~n~l 138 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGL---------RTL---LPVFLRARKLGLQLNSL 138 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHH---------HHT---HHHHHTEEEEECCSSCC
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHH---------HHH---HHHHHhccHhhcCCCCC
Confidence 4689999999999873 222233 34799999999996533211 111 22345799999999998
Q ss_pred ccCC-Cc----c-ccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCeeeCCCCCCCCC--
Q 037483 435 REPP-SS----I-FAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLGEG-- 506 (693)
Q Consensus 435 ~~lp-~~----~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~-- 506 (693)
+... .. + ...++|++|+|++|.+... ....+...+..+++|++|+|++|.+++.
T Consensus 139 ~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~------------------~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~ 200 (372)
T 3un9_A 139 GPEACKDLRDLLLHDQCQITTLRLSNNPLTAA------------------GVAVLMEGLAGNTSVTHLSLLHTGLGDEGL 200 (372)
T ss_dssp CHHHHHHHHHHHHSTTCCCCEEECCSSCCHHH------------------HHHHHHHHHHTCSSCCEEECTTSSCHHHHH
T ss_pred CHHHHHHHHHHHHhcCCccceeeCCCCCCChH------------------HHHHHHHHHhcCCCcCEEeCCCCCCCcHHH
Confidence 7431 22 2 2468999999999976432 2223333567789999999999998532
Q ss_pred -CCCccCCCCCCCCEEeCCCCCCc-----ccCccccCCCCCCEEecccccc
Q 037483 507 -AIPNDIGNLCSLKELYLSKNNFV-----TLPASISGLLNLKELELEDCAL 551 (693)
Q Consensus 507 -~~p~~l~~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~L~~n~~ 551 (693)
.++..+..+++|++|+|++|.++ .++..+...++|++|+|++|.+
T Consensus 201 ~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 201 ELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred HHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 12455677889999999999998 3455667789999999999998
No 157
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.04 E-value=3.3e-09 Score=108.23 Aligned_cols=168 Identities=15% Similarity=0.105 Sum_probs=111.6
Q ss_pred ccCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccc-ce-eEEEEccc-----------
Q 037483 13 SETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEF-EG-SSFLVDEV----------- 79 (693)
Q Consensus 13 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~-~~~~~~~~----------- 79 (693)
|..-.+++|+++.++.+.+++..+. ...+.|+|++|+|||++|+++++.+.... .. ...+....
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~~~---~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKTGS---MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKV 97 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHTC---CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHHcCC---CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHHH
Confidence 3445679999999999999988642 23489999999999999999998764321 11 12222110
Q ss_pred -------CC-CCCeEEEEEecCCCh--hhhhHHhcCCCcCCCCceEEEEeCChHH-HHH-cCCCceeeCCCCCHHHHHHH
Q 037483 80 -------GC-NTKKVLLVIDDVVDI--KQLEYLVGKREWFGSGSRIIITSRDEHL-LKT-HGVDELCEPNGLNYDEALQL 147 (693)
Q Consensus 80 -------~~-~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTtR~~~~-~~~-~~~~~~~~l~~L~~~ea~~l 147 (693)
.. .+++.++|+||++.. +..+.+...+.....++++|+||....- ... ......+++.+++.++..++
T Consensus 98 ~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~ 177 (327)
T 1iqp_A 98 KEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKR 177 (327)
T ss_dssp HHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHH
T ss_pred HHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHH
Confidence 01 156889999999764 3445555444444567888888876431 111 11234789999999999999
Q ss_pred HHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHHhh
Q 037483 148 LNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVLGS 185 (693)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 185 (693)
+...+....... ..+..+.+++.++|.|..+..+..
T Consensus 178 l~~~~~~~~~~~--~~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 178 LRYIAENEGLEL--TEEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp HHHHHHTTTCEE--CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcCCCC--CHHHHHHHHHHCCCCHHHHHHHHH
Confidence 988764332211 124467788999999986655443
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.02 E-value=5.6e-09 Score=109.02 Aligned_cols=192 Identities=14% Similarity=0.160 Sum_probs=109.6
Q ss_pred cCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCCCCCccCCCCCCCCccccc
Q 037483 334 LSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLEN 413 (693)
Q Consensus 334 l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~ 413 (693)
|.++ +|+.+.+.. .........|.++++|+.+++.+|.++.++.......+|+.+.+..+ ....-...|.+|.+|+.
T Consensus 154 F~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~ 230 (401)
T 4fdw_A 154 FFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKT 230 (401)
T ss_dssp TTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCC
T ss_pred cCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCE
Confidence 4443 577777765 33333345677788888888888878777766555677888887643 22233345566665553
Q ss_pred c--c--------ccccCCCCccEEecCCCccccC-CCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhh
Q 037483 414 V--S--------ETLGQVEILEELDISGTTIREP-PSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVAL 482 (693)
Q Consensus 414 l--p--------~~l~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (693)
+ | ..|.+ .+|+.+.+ .++++.+ ...+.++++|+.+.+.++........ ..
T Consensus 231 l~l~~~l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~-----------------~I 291 (401)
T 4fdw_A 231 IEIPENVSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEA-----------------MI 291 (401)
T ss_dssp EECCTTCCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTC-----------------EE
T ss_pred EecCCCccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCccc-----------------EE
Confidence 2 2 12333 45666666 3344444 34566677777777766543311000 00
Q ss_pred hhcccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccC-ccccCCCCCCEEecccccc
Q 037483 483 MLFSLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLP-ASISGLLNLKELELEDCAL 551 (693)
Q Consensus 483 ~~~~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~n~~ 551 (693)
....|.+|++|+.+++.++ ++. .-...|.+|++|+.+.|..| ++.++ ..+.++ +|+.|++.+|..
T Consensus 292 ~~~aF~~c~~L~~l~l~~~-i~~-I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 292 HPYCLEGCPKLARFEIPES-IRI-LGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp CTTTTTTCTTCCEECCCTT-CCE-ECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred CHHHhhCCccCCeEEeCCc-eEE-EhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 0115667777777777633 421 12345666777777777443 56554 456666 777777777654
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.01 E-value=1.1e-09 Score=112.89 Aligned_cols=101 Identities=24% Similarity=0.212 Sum_probs=54.7
Q ss_pred EecCCC-ccccCCCccccCCCCCEEEccC-CCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCeeeCCCCCCC
Q 037483 427 LDISGT-TIREPPSSIFAIKNLKKLSFSG-CSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLG 504 (693)
Q Consensus 427 L~l~~n-~i~~lp~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~ 504 (693)
++++++ .++.+|. +..+++|+.|+|++ |.+....+. .|.++++|+.|+|++|.|
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~----------------------~~~~l~~L~~L~l~~N~l- 68 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELR----------------------DLRGLGELRNLTIVKSGL- 68 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGG----------------------GSCSCCCCSEEECCSSCC-
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChh----------------------HhccccCCCEEECCCCcc-
Confidence 455554 5555555 55555556665554 444333211 455556666666666665
Q ss_pred CCCCCccCCCCCCCCEEeCCCCCCcccCccccCCCCCCEEecccccc
Q 037483 505 EGAIPNDIGNLCSLKELYLSKNNFVTLPASISGLLNLKELELEDCAL 551 (693)
Q Consensus 505 ~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~ 551 (693)
.+..|..|.++++|++|+|++|+|+.+|..+.....|+.|+|.+|++
T Consensus 69 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 69 RFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp CEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred ceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCc
Confidence 23344455666666666666666666654332222366666666655
No 160
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.94 E-value=1e-08 Score=106.73 Aligned_cols=167 Identities=15% Similarity=0.111 Sum_probs=111.2
Q ss_pred CCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccc---------------------eeE
Q 037483 15 TLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFE---------------------GSS 73 (693)
Q Consensus 15 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---------------------~~~ 73 (693)
...+++||+..++.+...+..+. ..+.+.|+|++|+|||++|+.+++.+..... ...
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~~--~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLGR--IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLI 91 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHTC--CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCE
T ss_pred chhhccCcHHHHHHHHHHHHhCC--CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceE
Confidence 34679999999999999997643 2457899999999999999999987643211 122
Q ss_pred EEEccc-----------------CCCCCeEEEEEecCCCh--hhhhHHhcCCCcCCCCceEEEEeCChH-H-HHHcCCCc
Q 037483 74 FLVDEV-----------------GCNTKKVLLVIDDVVDI--KQLEYLVGKREWFGSGSRIIITSRDEH-L-LKTHGVDE 132 (693)
Q Consensus 74 ~~~~~~-----------------~~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTtR~~~-~-~~~~~~~~ 132 (693)
.+.... ...+++.++|+||++.. ...+.+...+.....+..+|++|.... + ........
T Consensus 92 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~ 171 (373)
T 1jr3_A 92 EIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCL 171 (373)
T ss_dssp EEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSE
T ss_pred EecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhhee
Confidence 222210 13456789999999754 334555544443455677777776542 1 11122346
Q ss_pred eeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHHhh
Q 037483 133 LCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVLGS 185 (693)
Q Consensus 133 ~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 185 (693)
.+++.+++.++..+++...+-...... ..+....+++.++|.|..+..+..
T Consensus 172 ~i~~~~l~~~~~~~~l~~~~~~~~~~~--~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 172 QFHLKALDVEQIRHQLEHILNEEHIAH--EPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCCB--CHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred EeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHCCCCHHHHHHHHH
Confidence 889999999999999987663222211 123466789999999988776543
No 161
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.93 E-value=1.1e-08 Score=104.09 Aligned_cols=242 Identities=17% Similarity=0.127 Sum_probs=141.7
Q ss_pred cCCCCccccchhHHHHHHHHhcCC--CCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc------------
Q 037483 14 ETLKKLVRIDSCLEELRSLMDEGL--NDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV------------ 79 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~------------ 79 (693)
..-.+++|++..++++.+++.... ....+.|.|+|++|+|||++|+++++.....| .++....
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~---~~~~~~~~~~~~~l~~~l~ 85 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVTSGPAIEKPGDLAAILA 85 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---EEECTTTCCSHHHHHHHHT
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---EEEeccccCChHHHHHHHH
Confidence 345789999999999988886421 11346789999999999999999998764332 2222211
Q ss_pred CCCCCeEEEEEecCCChh--hhhHHhcCCCcC------------------CCCceEEEEeCChHHH-HHc--CCCceeeC
Q 037483 80 GCNTKKVLLVIDDVVDIK--QLEYLVGKREWF------------------GSGSRIIITSRDEHLL-KTH--GVDELCEP 136 (693)
Q Consensus 80 ~~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~------------------~~~~~iliTtR~~~~~-~~~--~~~~~~~l 136 (693)
+...++.++++|+++... ..+.+...+... .+..++|.||...... ... .....+.+
T Consensus 86 ~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l 165 (324)
T 1hqc_A 86 NSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHL 165 (324)
T ss_dssp TTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEEC
T ss_pred HhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEec
Confidence 113466799999997753 223232211110 1245677766643211 101 11357899
Q ss_pred CCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHHhhhhcC---------CChHHHHHHHHHhccCCC
Q 037483 137 NGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVLGSFLNG---------RSTDQWRSTLERLKRDPP 207 (693)
Q Consensus 137 ~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~---------~~~~~w~~~l~~l~~~~~ 207 (693)
++++.+|..+++...+....... ..+....++++++|+|..+..+...+.. -+.+.....+..+
T Consensus 166 ~~~~~~e~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~----- 238 (324)
T 1hqc_A 166 EYYTPEELAQGVMRDARLLGVRI--TEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAAL----- 238 (324)
T ss_dssp CCCCHHHHHHHHHHHHHTTTCCC--CHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHH-----
T ss_pred CCCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh-----
Confidence 99999999999988764322221 1244677899999999888776554421 1222233332222
Q ss_pred chHHHHHHHhhccCcHhhHhHHhhhhcccC--CCCHHHHHHHHHHcCCCcc---chhhh-hhcCCcEEEeCCCc
Q 037483 208 NKIMSILQISFDGLQDSEKKIFLDVACFFK--WKSREYVTKILEACGFSPV---IGIEV-LIEKSLLIVDEDNR 275 (693)
Q Consensus 208 ~~~~~~l~~s~~~L~~~~~~~~~~la~f~~--~~~~~~l~~~~~~~~~~~~---~~l~~-L~~~sLi~~~~~~~ 275 (693)
......+++.++..+..+..... ......+.+.+ |.... ..++. +++.+++.....++
T Consensus 239 -------~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~l---gi~~~tl~~~l~~~~i~~~li~~~~~g~ 302 (324)
T 1hqc_A 239 -------GLDELGLEKRDREILEVLILRFGGGPVGLATLATAL---SEDPGTLEEVHEPYLIRQGLLKRTPRGR 302 (324)
T ss_dssp -------TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHT---TSCHHHHHHHTHHHHHHTTSEEEETTEE
T ss_pred -------cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHh---CCCHHHHHHHHhHHHHHhcchhcCCccc
Confidence 22345677777777766654322 23454444433 33221 11333 77788888764443
No 162
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.84 E-value=6.3e-08 Score=101.07 Aligned_cols=187 Identities=11% Similarity=0.069 Sum_probs=115.6
Q ss_pred ccCCCCCCcEEEcCCCCCcccchhhhcCccccceeccCCcCceeecC-CcCCCCCCCEEecCCCCCCccCCCCCCCCccc
Q 037483 333 SLSSLKCLRTLELSGCSKLKRFLEIVASMEDLSELYLDGTFITKLPL-SIELLTGLELLNLNDCKNLLRLPSSIDGCFKL 411 (693)
Q Consensus 333 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L 411 (693)
.|.++ +|+.+.+..+ ........|.++ +|+.+.+.. .++.++. .|.++++|+.+++.+|... .+|...-.|.+|
T Consensus 131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~~~~L 205 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFVYAGI 205 (401)
T ss_dssp TTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTTTCCC
T ss_pred hcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEeeccc
Confidence 45554 7999998864 333334556664 799999986 6777754 5788999999999987543 333332224444
Q ss_pred ccc--c--------ccccCCCCccEEecCCCccccCCCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhh
Q 037483 412 ENV--S--------ETLGQVEILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVA 481 (693)
Q Consensus 412 ~~l--p--------~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (693)
+.+ | ..|.++++|+.+++..+ ++.++.....-.+|+.+.+.++ +....
T Consensus 206 ~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp~~-i~~I~-------------------- 263 (401)
T 4fdw_A 206 EEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLPNG-VTNIA-------------------- 263 (401)
T ss_dssp SEEECCTTCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEETT-CCEEC--------------------
T ss_pred CEEEeCCchheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeCCC-ccEEC--------------------
Confidence 422 1 23445556666666543 3444322222255666665332 11111
Q ss_pred hhhcccCCCCcCCeeeCCCCCCCC----CCCCccCCCCCCCCEEeCCCCCCcccC-ccccCCCCCCEEecccc
Q 037483 482 LMLFSLSGLCSLSKLDLSYCGLGE----GAIPNDIGNLCSLKELYLSKNNFVTLP-ASISGLLNLKELELEDC 549 (693)
Q Consensus 482 ~~~~~l~~l~~L~~L~ls~n~l~~----~~~p~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~n 549 (693)
...|.+|++|+.+++.+|.+.. ..-+..|.+|++|+.++|. ++++.++ ..+.+|++|+.+.|..+
T Consensus 264 --~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 264 --SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp --TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT
T ss_pred --hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc
Confidence 1167888888888888876531 1223567888888888888 4577776 46778888888888665
No 163
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.84 E-value=1.3e-08 Score=98.63 Aligned_cols=167 Identities=16% Similarity=0.086 Sum_probs=101.7
Q ss_pred cCCCCccccc---hhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc---------CC
Q 037483 14 ETLKKLVRID---SCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV---------GC 81 (693)
Q Consensus 14 ~~~~~~vGr~---~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~---------~~ 81 (693)
..-++|+|++ ..++.+..+.... ..+.+.|+|++|+|||++|+++++..........++.... ..
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASGD---GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTALLEG 101 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHTC---SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGGGGTT
T ss_pred CChhhccCCCCCHHHHHHHHHHHhCC---CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHHh
Confidence 3446788743 5556666665542 3567999999999999999999998765534445554421 12
Q ss_pred CCCeEEEEEecCCChhh----hhHHhcCCCcC-CCCc-eEEEEeCCh---------HHHHHcCCCceeeCCCCCHHHHHH
Q 037483 82 NTKKVLLVIDDVVDIKQ----LEYLVGKREWF-GSGS-RIIITSRDE---------HLLKTHGVDELCEPNGLNYDEALQ 146 (693)
Q Consensus 82 ~~~~~LlvlDdv~~~~~----~~~l~~~~~~~-~~~~-~iliTtR~~---------~~~~~~~~~~~~~l~~L~~~ea~~ 146 (693)
-.++.++|+||++.... .+.+...+... ..+. ++|+||+.. .+.........+++++++.++..+
T Consensus 102 ~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~ 181 (242)
T 3bos_A 102 LEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLA 181 (242)
T ss_dssp GGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHH
T ss_pred ccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHH
Confidence 24467999999965422 22222221111 1232 477777642 222222223688999999999999
Q ss_pred HHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHHhh
Q 037483 147 LLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVLGS 185 (693)
Q Consensus 147 l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 185 (693)
++...+....... ..+..+.+++.++|.+..+..+..
T Consensus 182 ~l~~~~~~~~~~~--~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 182 ALQRRAAMRGLQL--PEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp HHHHHHHHTTCCC--CHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCC--CHHHHHHHHHHccCCHHHHHHHHH
Confidence 9988763222211 123456788889998877665543
No 164
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.84 E-value=8e-08 Score=97.50 Aligned_cols=166 Identities=13% Similarity=0.084 Sum_probs=109.8
Q ss_pred cCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHh-cccce-eEEEEcc-c-----------
Q 037483 14 ETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLIS-HEFEG-SSFLVDE-V----------- 79 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~-~~f~~-~~~~~~~-~----------- 79 (693)
..-.+++|++..++.+.+++..+. ...+.++|++|+|||++|+.+++.+. ..+.. ...+... .
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~---~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYVERKN---IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIK 90 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTTTTTC---CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHH
T ss_pred CCHHHHhCCHHHHHHHHHHHhCCC---CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHHH
Confidence 344679999999999999887532 23389999999999999999998762 22111 1122210 0
Q ss_pred ------CC-CCCeEEEEEecCCCh--hhhhHHhcCCCcCCCCceEEEEeCChH-HH-HHcCCCceeeCCCCCHHHHHHHH
Q 037483 80 ------GC-NTKKVLLVIDDVVDI--KQLEYLVGKREWFGSGSRIIITSRDEH-LL-KTHGVDELCEPNGLNYDEALQLL 148 (693)
Q Consensus 80 ------~~-~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTtR~~~-~~-~~~~~~~~~~l~~L~~~ea~~l~ 148 (693)
.. .+++.++|+|+++.. +..+.+...+....+++++|+||.... +. ........+++.+++.++..+++
T Consensus 91 ~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l 170 (319)
T 2chq_A 91 EFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRL 170 (319)
T ss_dssp HHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHH
T ss_pred HHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHH
Confidence 01 256889999999764 334555555554556788888887643 11 11223458899999999999999
Q ss_pred HHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHHh
Q 037483 149 NTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVLG 184 (693)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 184 (693)
...+-...... ..+....+++.++|.+..+....
T Consensus 171 ~~~~~~~~~~i--~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 171 LEICEKEGVKI--TEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp HHHHHTTCCCB--CHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 88764332221 12346678889999998655443
No 165
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.80 E-value=1.4e-08 Score=104.62 Aligned_cols=104 Identities=18% Similarity=0.200 Sum_probs=73.1
Q ss_pred EEEcCCCCCcccchhhhcCccccceeccCC-cCceeec-CCcCCCCCCCEEecCCCCCCccCCCCCCCCccccccccccc
Q 037483 342 TLELSGCSKLKRFLEIVASMEDLSELYLDG-TFITKLP-LSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLENVSETLG 419 (693)
Q Consensus 342 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~-~~l~~l~-~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~lp~~l~ 419 (693)
.++.++++.+..+|. +..+++|++|+|++ |.++.++ ..+..+++|++|+|++|.+.+..|. .|+
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-------------~~~ 77 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD-------------AFH 77 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT-------------GGG
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHH-------------Hhc
Confidence 456666534555777 77778888888885 8888776 4577888888888888755443332 356
Q ss_pred CCCCccEEecCCCccccCCCccccCCCCCEEEccCCCCCC
Q 037483 420 QVEILEELDISGTTIREPPSSIFAIKNLKKLSFSGCSGPP 459 (693)
Q Consensus 420 ~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~ 459 (693)
++++|++|+|++|.++.+|..+....+|+.|+|.+|.+.-
T Consensus 78 ~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 78 FTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp SCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred CCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCccC
Confidence 7778888888888888887655544448888888876653
No 166
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.70 E-value=1.7e-07 Score=101.44 Aligned_cols=163 Identities=16% Similarity=0.174 Sum_probs=100.9
Q ss_pred cCCCCccccchhHHHHHHHHhcCC--------------CCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEc-c
Q 037483 14 ETLKKLVRIDSCLEELRSLMDEGL--------------NDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVD-E 78 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~~~--------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~-~ 78 (693)
..-.+++|++..++++.+++.... .+..+.+.|+|++|+|||++|+++++... ++. +.+.. .
T Consensus 36 ~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--~~~-i~in~s~ 112 (516)
T 1sxj_A 36 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--YDI-LEQNASD 112 (516)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--CEE-EEECTTS
T ss_pred CCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--CCE-EEEeCCC
Confidence 344689999999999999997510 01347899999999999999999998762 221 11211 0
Q ss_pred c------------------------------CCCCCeEEEEEecCCChhh-----hhHHhcCCCcCCCCceEEEEeCChH
Q 037483 79 V------------------------------GCNTKKVLLVIDDVVDIKQ-----LEYLVGKREWFGSGSRIIITSRDEH 123 (693)
Q Consensus 79 ~------------------------------~~~~~~~LlvlDdv~~~~~-----~~~l~~~~~~~~~~~~iliTtR~~~ 123 (693)
. ....++.++++|+++.... +..+..... ..+..||+++.+..
T Consensus 113 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~--~~~~~iIli~~~~~ 190 (516)
T 1sxj_A 113 VRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR--KTSTPLILICNERN 190 (516)
T ss_dssp CCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH--HCSSCEEEEESCTT
T ss_pred cchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHH--hcCCCEEEEEcCCC
Confidence 0 0125678999999965421 223322221 13344555555422
Q ss_pred ---HHHHcCCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchh-HHHH
Q 037483 124 ---LLKTHGVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLA-LKVL 183 (693)
Q Consensus 124 ---~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla-l~~~ 183 (693)
+.........+.+++++.++..+.+...+.......+ .+....|++.++|.+.. +..+
T Consensus 191 ~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~--~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 191 LPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD--PNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp SSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC--TTHHHHHHHHTTTCHHHHHHHH
T ss_pred CccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCcHHHHHHHH
Confidence 2222233557899999999999998877643222111 12356788889996544 4444
No 167
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.70 E-value=8.2e-08 Score=98.29 Aligned_cols=241 Identities=15% Similarity=0.106 Sum_probs=139.5
Q ss_pred CCCCccccchhHHHHHHHHhcC--CCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEc-cc----------CC
Q 037483 15 TLKKLVRIDSCLEELRSLMDEG--LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVD-EV----------GC 81 (693)
Q Consensus 15 ~~~~~vGr~~~~~~l~~~l~~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~-~~----------~~ 81 (693)
.-.+++|++..++++..++... .......|.|+|++|+|||++|+++++.....|- .+.. .. ..
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 103 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIK---TTAAPMIEKSGDLAAILTN 103 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEE---EEEGGGCCSHHHHHHHHHT
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeE---EecchhccchhHHHHHHHh
Confidence 4468999999999999988753 1224556899999999999999999887644331 1222 11 12
Q ss_pred CCCeEEEEEecCCChh--hhhHHhcCCCcC------------------CCCceEEEEeCChH-----HHHHcCCCceeeC
Q 037483 82 NTKKVLLVIDDVVDIK--QLEYLVGKREWF------------------GSGSRIIITSRDEH-----LLKTHGVDELCEP 136 (693)
Q Consensus 82 ~~~~~LlvlDdv~~~~--~~~~l~~~~~~~------------------~~~~~iliTtR~~~-----~~~~~~~~~~~~l 136 (693)
..+..+++||+++... ....+...+... .++..+|.+|.... +.. .....+.+
T Consensus 104 ~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l 181 (338)
T 3pfi_A 104 LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRL 181 (338)
T ss_dssp CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEEC
T ss_pred ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeC
Confidence 3466799999997542 222222211110 12356666666532 222 22468999
Q ss_pred CCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHHhhhhc------CC---ChHHHHHHHHHhccCCC
Q 037483 137 NGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVLGSFLN------GR---STDQWRSTLERLKRDPP 207 (693)
Q Consensus 137 ~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~------~~---~~~~w~~~l~~l~~~~~ 207 (693)
++++.++..+++...+...... -..+..+.+++.+.|+|..+..+...+. +. +.+.....+..
T Consensus 182 ~~~~~~e~~~il~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~------ 253 (338)
T 3pfi_A 182 EFYKDSELALILQKAALKLNKT--CEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNS------ 253 (338)
T ss_dssp CCCCHHHHHHHHHHHHHHTTCE--ECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH------
T ss_pred CCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHH------
Confidence 9999999999998876432221 1233466788889999966655543321 11 22222222222
Q ss_pred chHHHHHHHhhccCcHhhHhHHhhhhcccC-CCCHHHHHHHHHHcCCCc---cchhh-hhhcCCcEEEeCCCcEe
Q 037483 208 NKIMSILQISFDGLQDSEKKIFLDVACFFK-WKSREYVTKILEACGFSP---VIGIE-VLIEKSLLIVDEDNRLQ 277 (693)
Q Consensus 208 ~~~~~~l~~s~~~L~~~~~~~~~~la~f~~-~~~~~~l~~~~~~~~~~~---~~~l~-~L~~~sLi~~~~~~~~~ 277 (693)
+..+...++..+++.+..++-... ......+.+.+ |... ...++ .|++.++|.....++..
T Consensus 254 ------~~~~~~~l~~~e~~~l~~l~~~~~~~~~~~~~a~~l---g~~~~tl~~~l~~~l~~~gli~~~~~g~~~ 319 (338)
T 3pfi_A 254 ------LGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAAL---SEDENTIEDVIEPYLLANGYIERTAKGRIA 319 (338)
T ss_dssp ------HTCCTTCCCHHHHHHHHHHHHSCSCCBCHHHHHHHT---TCCHHHHHHTTHHHHHHTTSEEEETTEEEE
T ss_pred ------hCCcccCCCHHHHHHHHHHHHhcCCCchHHHHHHHh---CCCHHHHHHHHhHHHHHcCceecCCCcccc
Confidence 222334455555666666655421 12345544443 3322 22244 68889999887655543
No 168
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.70 E-value=3.3e-08 Score=92.05 Aligned_cols=130 Identities=12% Similarity=0.078 Sum_probs=82.3
Q ss_pred cCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc-------cceeEEEEccc-------
Q 037483 14 ETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHE-------FEGSSFLVDEV------- 79 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-------f~~~~~~~~~~------- 79 (693)
.....++||+++++++.+.+... ..+.+.|+|++|+|||++|+++++.+... .....++....
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~~---~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQRR---TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKY 95 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSS---SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCS
T ss_pred ccccccccchHHHHHHHHHHhcC---CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCc
Confidence 34568999999999999998763 34568999999999999999999876431 11222332100
Q ss_pred ---------------CCCCCeEEEEEecCCChh---------h-hhHHhcCCCcCCCCceEEEEeCChHHHHH-------
Q 037483 80 ---------------GCNTKKVLLVIDDVVDIK---------Q-LEYLVGKREWFGSGSRIIITSRDEHLLKT------- 127 (693)
Q Consensus 80 ---------------~~~~~~~LlvlDdv~~~~---------~-~~~l~~~~~~~~~~~~iliTtR~~~~~~~------- 127 (693)
...+++.++|+||++... . ...+..... ..+..+|.||........
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~l 173 (195)
T 1jbk_A 96 RGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGATTLDEYRQYIEKDAAL 173 (195)
T ss_dssp HHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH--TTSCCEEEEECHHHHHHHTTTCHHH
T ss_pred cccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc--cCCeEEEEeCCHHHHHHHHhcCHHH
Confidence 024567899999997652 1 111211111 235567777776542211
Q ss_pred cCCCceeeCCCCCHHHHHHHH
Q 037483 128 HGVDELCEPNGLNYDEALQLL 148 (693)
Q Consensus 128 ~~~~~~~~l~~L~~~ea~~l~ 148 (693)
......+.++.++.++..+++
T Consensus 174 ~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 174 ERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HTTEEEEECCCCCHHHHHTTC
T ss_pred HHHhceeecCCCCHHHHHHHh
Confidence 122235788888888876653
No 169
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.69 E-value=1.8e-07 Score=92.49 Aligned_cols=152 Identities=14% Similarity=0.129 Sum_probs=91.6
Q ss_pred CCCccccchhHHHHHH-------HHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEcc--cC------
Q 037483 16 LKKLVRIDSCLEELRS-------LMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDE--VG------ 80 (693)
Q Consensus 16 ~~~~vGr~~~~~~l~~-------~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~--~~------ 80 (693)
...++|.+..++++.. .+........+.+.|+|++|+|||++|+++++..... ...+.... .+
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~--~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFP--FIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCS--EEEEECGGGCTTCCHHHH
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCC--EEEEeCHHHhcCCchHHH
Confidence 3578999988777766 2322223367889999999999999999999875432 22221111 00
Q ss_pred -----------CCCCeEEEEEecCCCh------------hhhhHHhcCCC---cCCCCceEEEEeCChHHHHHc----CC
Q 037483 81 -----------CNTKKVLLVIDDVVDI------------KQLEYLVGKRE---WFGSGSRIIITSRDEHLLKTH----GV 130 (693)
Q Consensus 81 -----------~~~~~~LlvlDdv~~~------------~~~~~l~~~~~---~~~~~~~iliTtR~~~~~~~~----~~ 130 (693)
...+..+++||+++.. ..++.+...+. ..+....||.||......... ..
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf 189 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAF 189 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTS
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhccc
Confidence 2346889999998653 11222322222 123345577788877554431 12
Q ss_pred CceeeCCCCCH-HHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCC
Q 037483 131 DELCEPNGLNY-DEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGL 176 (693)
Q Consensus 131 ~~~~~l~~L~~-~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 176 (693)
...+.+++++. ++..+++.... ... .+....+++.+.|.
T Consensus 190 ~~~i~~p~l~~r~~i~~i~~~~~---~~~----~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 190 STTIHVPNIATGEQLLEALELLG---NFK----DKERTTIAQQVKGK 229 (272)
T ss_dssp SEEEECCCEEEHHHHHHHHHHHT---CSC----HHHHHHHHHHHTTS
T ss_pred ceEEcCCCccHHHHHHHHHHhcC---CCC----HHHHHHHHHHhcCC
Confidence 46789999988 66666665532 112 22356677788773
No 170
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.67 E-value=2.7e-09 Score=109.39 Aligned_cols=61 Identities=13% Similarity=0.060 Sum_probs=29.7
Q ss_pred ccCCCCCCcEEEcCCCCC---------cccchhhhcCccccceeccCCcCceeecCCcCCCCCCCEEecCCC
Q 037483 333 SLSSLKCLRTLELSGCSK---------LKRFLEIVASMEDLSELYLDGTFITKLPLSIELLTGLELLNLNDC 395 (693)
Q Consensus 333 ~l~~l~~L~~L~l~~~~~---------~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~ 395 (693)
+..++++|+.|.+..... .+.+...+..+++|+.|+|++|.-..++. + .+++|+.|+|..|
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~ 203 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISG 203 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECS
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecC
Confidence 344566777777755321 11233444555566666665542112222 2 2455555555544
No 171
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.63 E-value=1.3e-06 Score=89.98 Aligned_cols=163 Identities=13% Similarity=0.085 Sum_probs=105.4
Q ss_pred ccCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc--cceeE-EEEc-c-c--------
Q 037483 13 SETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHE--FEGSS-FLVD-E-V-------- 79 (693)
Q Consensus 13 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~-~~~~-~-~-------- 79 (693)
|..-.+++|+++.++.+..++..+.. ..+.|+|++|+||||+|+.+++.+... +...+ .+.. . .
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~~~~---~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKSANL---PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREK 109 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTCTTC---CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTH
T ss_pred CCCHHHhhCCHHHHHHHHHHHhcCCC---CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHH
Confidence 34457899999999999999876432 228999999999999999999875421 21111 1111 0 0
Q ss_pred ------C-------------CCCCeEEEEEecCCChh--hhhHHhcCCCcCCCCceEEEEeCChH-----HHHHcCCCce
Q 037483 80 ------G-------------CNTKKVLLVIDDVVDIK--QLEYLVGKREWFGSGSRIIITSRDEH-----LLKTHGVDEL 133 (693)
Q Consensus 80 ------~-------------~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTtR~~~-----~~~~~~~~~~ 133 (693)
. ..+++-++++|+++... ....+...+.......++|++|.... +... ...
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR---~~~ 186 (353)
T 1sxj_D 110 VKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQ---CSK 186 (353)
T ss_dssp HHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHH---SEE
T ss_pred HHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhcc---Cce
Confidence 0 02355699999986542 23444443333345667777775532 2222 247
Q ss_pred eeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHH
Q 037483 134 CEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVL 183 (693)
Q Consensus 134 ~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 183 (693)
+++.+++.++..+.+...+....... ..+..+.|++.++|.|..+..+
T Consensus 187 i~~~~~~~~~~~~~l~~~~~~~~~~i--~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 187 FRFKALDASNAIDRLRFISEQENVKC--DDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCCC--CHHHHHHHHHHTSSCHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 89999999999999988763322211 1234678899999999865444
No 172
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.61 E-value=8.7e-08 Score=95.50 Aligned_cols=166 Identities=19% Similarity=0.238 Sum_probs=100.7
Q ss_pred CccCCCCccccchhHHHHHHHHhcC----------CCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEc-cc-
Q 037483 12 KSETLKKLVRIDSCLEELRSLMDEG----------LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVD-EV- 79 (693)
Q Consensus 12 ~~~~~~~~vGr~~~~~~l~~~l~~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~-~~- 79 (693)
+...-.+++|+++.+++|.+.+... .-...+.+.|+|++|+|||++|+++++.....|- .+.. ..
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~---~v~~~~~~ 88 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFI---RVVGSELV 88 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEE---EEEGGGGC
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EEehHHHH
Confidence 4445578999999999999887542 0013456999999999999999999987644321 1111 11
Q ss_pred -----------------CCCCCeEEEEEecCCChh----------------hhhHHhcCCC--cCCCCceEEEEeCChHH
Q 037483 80 -----------------GCNTKKVLLVIDDVVDIK----------------QLEYLVGKRE--WFGSGSRIIITSRDEHL 124 (693)
Q Consensus 80 -----------------~~~~~~~LlvlDdv~~~~----------------~~~~l~~~~~--~~~~~~~iliTtR~~~~ 124 (693)
.....+.+++||+++... .+..+..... ....+..||.||.....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~ 168 (285)
T 3h4m_A 89 KKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDI 168 (285)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGG
T ss_pred HhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchh
Confidence 022356899999996531 1122222111 11345677778875432
Q ss_pred -----HHHcCCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCC-CchhHHHH
Q 037483 125 -----LKTHGVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGG-LPLALKVL 183 (693)
Q Consensus 125 -----~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~ 183 (693)
.........+.++..+.++..+++...+.......+. ....+++.+.| .|-.+..+
T Consensus 169 l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~---~~~~l~~~~~g~~~~~i~~l 230 (285)
T 3h4m_A 169 LDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDV---NLEEIAKMTEGCVGAELKAI 230 (285)
T ss_dssp BCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHHCTTCCHHHHHHH
T ss_pred cCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcC---CHHHHHHHcCCCCHHHHHHH
Confidence 2111234578999999999999998876432221110 13456666766 45455544
No 173
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.58 E-value=1.2e-08 Score=104.46 Aligned_cols=164 Identities=16% Similarity=0.165 Sum_probs=101.4
Q ss_pred hhhcCccccceeccCCcCce----------eecCCcCCCCCCCEEecCCCCCCccCCCCCCCCcccccccccccCCCCcc
Q 037483 356 EIVASMEDLSELYLDGTFIT----------KLPLSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLENVSETLGQVEILE 425 (693)
Q Consensus 356 ~~~~~l~~L~~L~L~~~~l~----------~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~lp~~l~~l~~L~ 425 (693)
.....+++|+.|.+.+.... .+...+..+++|+.|+|++|... . ++. + .+++|+
T Consensus 133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~-------------l~~-~-~~~~L~ 196 (362)
T 2ra8_A 133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-S-------------IGK-K-PRPNLK 196 (362)
T ss_dssp TTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-B-------------CCS-C-BCTTCS
T ss_pred HhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-e-------------ecc-c-cCCCCc
Confidence 34556788999988654321 23333466789999999887211 1 122 2 267899
Q ss_pred EEecCCCccccC-CCccc--cCCCCCEEEccCCCC--CCCCCCccccccccccCCCCchhhhhhcccCCCCcCCeeeCCC
Q 037483 426 ELDISGTTIREP-PSSIF--AIKNLKKLSFSGCSG--PPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSY 500 (693)
Q Consensus 426 ~L~l~~n~i~~l-p~~~~--~l~~L~~L~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~ 500 (693)
+|++..|.+..- ...+. .+++|++|+|+.+.. ..... ...+... .....+++|+.|++++
T Consensus 197 ~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~--------------~~~l~~~-l~~~~~p~Lr~L~L~~ 261 (362)
T 2ra8_A 197 SLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGD--------------MNVFRPL-FSKDRFPNLKWLGIVD 261 (362)
T ss_dssp EEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSC--------------GGGTGGG-SCTTTCTTCCEEEEES
T ss_pred EEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchh--------------HHHHHHH-HhcCCCCCcCEEeCCC
Confidence 999988876521 12232 688999998864211 11100 0000000 0123578999999999
Q ss_pred CCCCCCCCCccC---CCCCCCCEEeCCCCCCcc-----cCccccCCCCCCEEecccccc
Q 037483 501 CGLGEGAIPNDI---GNLCSLKELYLSKNNFVT-----LPASISGLLNLKELELEDCAL 551 (693)
Q Consensus 501 n~l~~~~~p~~l---~~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~~n~~ 551 (693)
|.+++. .+..+ ..+++|++|+|+.|.++. ++..+..+++|+.|+|++|.+
T Consensus 262 ~~i~~~-~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 262 AEEQNV-VVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp CTTHHH-HHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred CCCchH-HHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 887421 11111 357899999999998873 555667788999999999876
No 174
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.52 E-value=1.3e-06 Score=89.68 Aligned_cols=167 Identities=10% Similarity=0.051 Sum_probs=101.5
Q ss_pred CccCCCCccccchhHHHHHHHHhcC---------CCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEc-cc--
Q 037483 12 KSETLKKLVRIDSCLEELRSLMDEG---------LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVD-EV-- 79 (693)
Q Consensus 12 ~~~~~~~~vGr~~~~~~l~~~l~~~---------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~-~~-- 79 (693)
++..-.+++|.++.+++|.+.+... .....+.|.|+|++|+|||++|+++++.....| +.+.. ..
T Consensus 79 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~---~~i~~~~l~~ 155 (357)
T 3d8b_A 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATF---FSISASSLTS 155 (357)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEE---EEEEGGGGCC
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeE---EEEehHHhhc
Confidence 3444578999999999999887530 012356799999999999999999998753322 12222 11
Q ss_pred ---C-------------CCCCeEEEEEecCCChh-------------hhhHHhcCCC----cCCCCceEEEEeCChH---
Q 037483 80 ---G-------------CNTKKVLLVIDDVVDIK-------------QLEYLVGKRE----WFGSGSRIIITSRDEH--- 123 (693)
Q Consensus 80 ---~-------------~~~~~~LlvlDdv~~~~-------------~~~~l~~~~~----~~~~~~~iliTtR~~~--- 123 (693)
+ ...++.+|+||+++... ....+...+. ....+..||.||....
T Consensus 156 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~ 235 (357)
T 3d8b_A 156 KWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEID 235 (357)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBC
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCC
Confidence 0 12456899999995431 1222222211 1123455666776532
Q ss_pred --HHHHcCCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCC-CchhHHHHhh
Q 037483 124 --LLKTHGVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGG-LPLALKVLGS 185 (693)
Q Consensus 124 --~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~~~ 185 (693)
+.. .....+.++..+.++..+++...+-....... .+....+++.+.| .+-.+..++.
T Consensus 236 ~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~--~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 236 EAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLS--EEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp HHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC--HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc--HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 222 23457788999999999998877632221111 2345678888888 5556666654
No 175
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.50 E-value=6.7e-07 Score=87.75 Aligned_cols=166 Identities=15% Similarity=0.157 Sum_probs=97.6
Q ss_pred CCCCccccchhHHHHHHHHhcC---C------CCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEc-cc-----
Q 037483 15 TLKKLVRIDSCLEELRSLMDEG---L------NDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVD-EV----- 79 (693)
Q Consensus 15 ~~~~~vGr~~~~~~l~~~l~~~---~------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~-~~----- 79 (693)
.-.+++|.++.++++.+++... . ....+.+.|+|++|+|||++|+++++.....| +.+.. ..
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF---LAMAGAEFVEVIG 80 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE---EEEETTTTSSSST
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE---EEechHHHHhhcc
Confidence 3467999999988887765431 0 02345689999999999999999998764432 12221 10
Q ss_pred C-------------CCCCeEEEEEecCCChh-----------------hhhHHhcCCCc--CCCCceEEEEeCChHHHHH
Q 037483 80 G-------------CNTKKVLLVIDDVVDIK-----------------QLEYLVGKREW--FGSGSRIIITSRDEHLLKT 127 (693)
Q Consensus 80 ~-------------~~~~~~LlvlDdv~~~~-----------------~~~~l~~~~~~--~~~~~~iliTtR~~~~~~~ 127 (693)
+ ....+.++++|+++... .+..+...... ...+..||.||........
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~ 160 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDG 160 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGS
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCH
Confidence 0 12347899999997641 11222221111 1235567777765432111
Q ss_pred --c---CCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCch-hHHHHh
Q 037483 128 --H---GVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPL-ALKVLG 184 (693)
Q Consensus 128 --~---~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~ 184 (693)
. .....+.++..+.++..+++...+........ .......+++.+.|.+- .+..+.
T Consensus 161 ~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~l~~l~ 222 (262)
T 2qz4_A 161 ALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQS-STFYSQRLAELTPGFSGADIANIC 222 (262)
T ss_dssp GGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBT-HHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred HHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcc-hhhHHHHHHHHCCCCCHHHHHHHH
Confidence 1 22467789999999999999887643222221 12234667888888754 454443
No 176
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.50 E-value=7.5e-07 Score=90.47 Aligned_cols=160 Identities=15% Similarity=0.128 Sum_probs=101.6
Q ss_pred ccCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEcc-c------------
Q 037483 13 SETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDE-V------------ 79 (693)
Q Consensus 13 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~-~------------ 79 (693)
|..-++++|.++.++.+.+++..+. ...++.++|++|+|||++|+++++.+... ...+... .
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~~~--~~~~~L~~G~~G~GKT~la~~la~~l~~~---~~~i~~~~~~~~~i~~~~~~~ 96 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSKGK--IPHIILHSPSPGTGKTTVAKALCHDVNAD---MMFVNGSDCKIDFVRGPLTNF 96 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHTTC--CCSEEEECSSTTSSHHHHHHHHHHHTTEE---EEEEETTTCCHHHHHTHHHHH
T ss_pred CCCHHHHhCcHHHHHHHHHHHHcCC--CCeEEEeeCcCCCCHHHHHHHHHHHhCCC---EEEEcccccCHHHHHHHHHHH
Confidence 3445789999999999999998543 34678889999999999999999876322 2222221 0
Q ss_pred ----CCCCCeEEEEEecCCChh---hhhHHhcCCCcCCCCceEEEEeCChH-----HHHHcCCCceeeCCCCCHHHHHHH
Q 037483 80 ----GCNTKKVLLVIDDVVDIK---QLEYLVGKREWFGSGSRIIITSRDEH-----LLKTHGVDELCEPNGLNYDEALQL 147 (693)
Q Consensus 80 ----~~~~~~~LlvlDdv~~~~---~~~~l~~~~~~~~~~~~iliTtR~~~-----~~~~~~~~~~~~l~~L~~~ea~~l 147 (693)
...+++.++++|+++... ..+.+...+.....+.++|+||.... +... ...+++++++.++-.++
T Consensus 97 ~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR---~~~i~~~~~~~~e~~~i 173 (324)
T 3u61_B 97 ASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR---CRVITFGQPTDEDKIEM 173 (324)
T ss_dssp HHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH---SEEEECCCCCHHHHHHH
T ss_pred HhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh---CcEEEeCCCCHHHHHHH
Confidence 134478899999998765 34444443333345678888887643 2222 24789999998884433
Q ss_pred H-------HHhcccCCCCchHHHHHHHHHHHHhCCCchhHH
Q 037483 148 L-------NTKAFKTHKPLEECAKLSERVPQYAGGLPLALK 181 (693)
Q Consensus 148 ~-------~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 181 (693)
+ ...+.......++ .+....+++.++|.+..+.
T Consensus 174 l~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 174 MKQMIRRLTEICKHEGIAIAD-MKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp HHHHHHHHHHHHHHHTCCBSC-HHHHHHHHHHTCSCTTHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHhCCCCHHHHH
Confidence 2 2222111111111 1445667888888776443
No 177
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.49 E-value=1.7e-08 Score=93.31 Aligned_cols=118 Identities=14% Similarity=0.086 Sum_probs=79.5
Q ss_pred ccccCCCCccEEecCCC-cccc-----CCCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCC
Q 037483 416 ETLGQVEILEELDISGT-TIRE-----PPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSG 489 (693)
Q Consensus 416 ~~l~~l~~L~~L~l~~n-~i~~-----lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 489 (693)
..+...++|++|+|++| .+.. +...+...++|++|+|++|.+... ....+...+..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~------------------g~~~l~~~L~~ 91 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDP------------------VAFALAEMLKV 91 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHH------------------HHHHHHHHHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChH------------------HHHHHHHHHHh
Confidence 34555677777777777 6652 233455567788888887765432 12223334555
Q ss_pred CCcCCeeeCCCCCCCCCC---CCccCCCCCCCCEEeC--CCCCCc-----ccCccccCCCCCCEEecccccc
Q 037483 490 LCSLSKLDLSYCGLGEGA---IPNDIGNLCSLKELYL--SKNNFV-----TLPASISGLLNLKELELEDCAL 551 (693)
Q Consensus 490 l~~L~~L~ls~n~l~~~~---~p~~l~~l~~L~~L~L--~~n~l~-----~lp~~l~~l~~L~~L~L~~n~~ 551 (693)
.++|++|+|++|.+++.. +...+...++|++|+| ++|.+. .+...+...++|++|+|++|.+
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 678888888888884321 3455667788999999 778887 2556677788999999999977
No 178
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.47 E-value=7.5e-07 Score=92.30 Aligned_cols=162 Identities=15% Similarity=0.098 Sum_probs=97.1
Q ss_pred CCCccccchhHHHHHHH---HhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEcc--------------
Q 037483 16 LKKLVRIDSCLEELRSL---MDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDE-------------- 78 (693)
Q Consensus 16 ~~~~vGr~~~~~~l~~~---l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~-------------- 78 (693)
.+++||++...+.+..+ +..+.. ..+.+.|+|++|+|||++|+++++.+....+....-...
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~-~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKI-AGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQ 121 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCC-TTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCC-CCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHH
Confidence 46899999987775444 443322 236899999999999999999999876433221111000
Q ss_pred -------------------------------------cC---------------------CCCC----eEEEEEecCCCh
Q 037483 79 -------------------------------------VG---------------------CNTK----KVLLVIDDVVDI 96 (693)
Q Consensus 79 -------------------------------------~~---------------------~~~~----~~LlvlDdv~~~ 96 (693)
.+ ..++ +.++++|+++..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l 201 (368)
T 3uk6_A 122 AFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHML 201 (368)
T ss_dssp HHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGS
T ss_pred HHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcccc
Confidence 00 0011 359999999765
Q ss_pred h--hhhHHhcCCCcCCCCceEEEEeCC-----------------hHHHHHcCCCceeeCCCCCHHHHHHHHHHhcccCCC
Q 037483 97 K--QLEYLVGKREWFGSGSRIIITSRD-----------------EHLLKTHGVDELCEPNGLNYDEALQLLNTKAFKTHK 157 (693)
Q Consensus 97 ~--~~~~l~~~~~~~~~~~~iliTtR~-----------------~~~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~ 157 (693)
. ....+...+...... .++++|.. +.+.. ....+.+++++.++..+++...+-....
T Consensus 202 ~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s---R~~~i~~~~~~~~e~~~il~~~~~~~~~ 277 (368)
T 3uk6_A 202 DIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLD---RLLIVSTTPYSEKDTKQILRIRCEEEDV 277 (368)
T ss_dssp BHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHT---TEEEEEECCCCHHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHh---hccEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 2 233344333322223 34444431 22222 2345799999999999999887643222
Q ss_pred CchHHHHHHHHHHHHhC-CCchhHHHHh
Q 037483 158 PLEECAKLSERVPQYAG-GLPLALKVLG 184 (693)
Q Consensus 158 ~~~~~~~~~~~i~~~~~-g~Plal~~~~ 184 (693)
.. ..+....+++.+. |.|..+..+.
T Consensus 278 ~~--~~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 278 EM--SEDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp CB--CHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CC--CHHHHHHHHHHhcCCCHHHHHHHH
Confidence 21 1234667888887 8887665544
No 179
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.47 E-value=7.5e-07 Score=89.23 Aligned_cols=178 Identities=19% Similarity=0.183 Sum_probs=106.7
Q ss_pred ChhHHHhcC--CCCccCCCCccccchhHHHHHHHHhcC---------CCCCeEEEEEEcCCCchHHHHHHHHHHHHhccc
Q 037483 1 MVKAISSKI--PVKSETLKKLVRIDSCLEELRSLMDEG---------LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEF 69 (693)
Q Consensus 1 ~~~~~~~~l--~~~~~~~~~~vGr~~~~~~l~~~l~~~---------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 69 (693)
|++.+.+.+ ..++..-.+++|.++.++.+.+.+... .....+.+.|+|++|+|||++|+++++.....|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~ 82 (297)
T 3b9p_A 3 LVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATF 82 (297)
T ss_dssp HHHHHHTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe
Confidence 356666666 334445578999999999999887431 011346799999999999999999998764332
Q ss_pred ceeEEEEc-cc-----C-------------CCCCeEEEEEecCCChh-------------hhhHHhcCCCc-----CCCC
Q 037483 70 EGSSFLVD-EV-----G-------------CNTKKVLLVIDDVVDIK-------------QLEYLVGKREW-----FGSG 112 (693)
Q Consensus 70 ~~~~~~~~-~~-----~-------------~~~~~~LlvlDdv~~~~-------------~~~~l~~~~~~-----~~~~ 112 (693)
- .+.. .. + ....+.++++|+++... ....+...+.. .+.+
T Consensus 83 ~---~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 159 (297)
T 3b9p_A 83 L---NISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDR 159 (297)
T ss_dssp E---EEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------C
T ss_pred E---EeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCc
Confidence 1 1221 10 0 12356899999995431 01112211111 1234
Q ss_pred ceEEEEeCChH-----HHHHcCCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCch-hHHHHhh
Q 037483 113 SRIIITSRDEH-----LLKTHGVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPL-ALKVLGS 185 (693)
Q Consensus 113 ~~iliTtR~~~-----~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~ 185 (693)
..||.||.... +... ....+.++..+.++..+++...+-....... .+....+++.+.|.+- ++..+..
T Consensus 160 v~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~~~~la~~~~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 160 IVVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGSPLD--TEALRRLAKITDGYSGSDLTALAK 234 (297)
T ss_dssp EEEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSCCSC--HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 56677777532 3332 2356778888888888888776533222111 2345678888888875 5555543
No 180
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.47 E-value=3.2e-07 Score=96.66 Aligned_cols=165 Identities=16% Similarity=0.155 Sum_probs=103.0
Q ss_pred ccCCCCccccchhH---HHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc----------
Q 037483 13 SETLKKLVRIDSCL---EELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV---------- 79 (693)
Q Consensus 13 ~~~~~~~vGr~~~~---~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~---------- 79 (693)
|..-.++||.+..+ ..|...+..+ ....+.|+|++|+||||+|+.+++.....|.... ....
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~---~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~--a~~~~~~~ir~~~~ 96 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAG---HLHSMILWGPPGTGKTTLAEVIARYANADVERIS--AVTSGVKEIREAIE 96 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHT---CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEE--TTTCCHHHHHHHHH
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcC---CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEE--eccCCHHHHHHHHH
Confidence 44557899999888 7788877753 3467999999999999999999987654432111 1111
Q ss_pred -----CCCCCeEEEEEecCCChh--hhhHHhcCCCcCCCCceEEE-EeCChH--H-HHHcCCCceeeCCCCCHHHHHHHH
Q 037483 80 -----GCNTKKVLLVIDDVVDIK--QLEYLVGKREWFGSGSRIII-TSRDEH--L-LKTHGVDELCEPNGLNYDEALQLL 148 (693)
Q Consensus 80 -----~~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~ili-TtR~~~--~-~~~~~~~~~~~l~~L~~~ea~~l~ 148 (693)
...+++.++++|+++... +.+.+...+.. ....+|. ||.+.. + ........++.+++++.++..+++
T Consensus 97 ~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il 174 (447)
T 3pvs_A 97 RARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVL 174 (447)
T ss_dssp HHHHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred HHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHH
Confidence 123568899999997653 23333333221 2234444 444432 1 112233457899999999999999
Q ss_pred HHhcccCC-----CCchHHHHHHHHHHHHhCCCchhHHHHh
Q 037483 149 NTKAFKTH-----KPLEECAKLSERVPQYAGGLPLALKVLG 184 (693)
Q Consensus 149 ~~~~~~~~-----~~~~~~~~~~~~i~~~~~g~Plal~~~~ 184 (693)
.+.+-... ....-..+..+.+++.++|.+..+..+.
T Consensus 175 ~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 175 TQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp HHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 88763311 1111223456778888999987665543
No 181
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.42 E-value=1.2e-06 Score=89.73 Aligned_cols=166 Identities=13% Similarity=0.093 Sum_probs=101.0
Q ss_pred ccCCCCccccchhHHHHHHHHhcC---------CCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEc-c----
Q 037483 13 SETLKKLVRIDSCLEELRSLMDEG---------LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVD-E---- 78 (693)
Q Consensus 13 ~~~~~~~vGr~~~~~~l~~~l~~~---------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~-~---- 78 (693)
+..-.+++|.++.++.|.+.+... .....+-|.|+|++|+|||++|+++++.....|- .+.. .
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~---~v~~~~l~~~ 123 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFF---SVSSSDLVSK 123 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEE---EEEHHHHHSC
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEE---EeeHHHHhhh
Confidence 344467999999999999877321 1112456899999999999999999997743321 1111 0
Q ss_pred -cC-------------CCCCeEEEEEecCCChhh-------------hhHHhcCCC---cCCCCceEEEEeCChH-----
Q 037483 79 -VG-------------CNTKKVLLVIDDVVDIKQ-------------LEYLVGKRE---WFGSGSRIIITSRDEH----- 123 (693)
Q Consensus 79 -~~-------------~~~~~~LlvlDdv~~~~~-------------~~~l~~~~~---~~~~~~~iliTtR~~~----- 123 (693)
.+ ...++.+|+||+++.... ...+...+. ....+..||.||....
T Consensus 124 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~a 203 (355)
T 2qp9_X 124 WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSA 203 (355)
T ss_dssp C---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHH
T ss_pred hcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHH
Confidence 00 223678999999975421 222222211 1134556666776542
Q ss_pred HHHHcCCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCC-CchhHHHHhh
Q 037483 124 LLKTHGVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGG-LPLALKVLGS 185 (693)
Q Consensus 124 ~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~~~ 185 (693)
+.. .....+.++..+.++..+++..++........ ......|++.+.| .+-.|..++.
T Consensus 204 l~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~--~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 204 IRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLT--KEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp HHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC--HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 333 34567889999999999999887643221111 2235668888888 4545555543
No 182
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.42 E-value=1.9e-06 Score=87.11 Aligned_cols=167 Identities=13% Similarity=0.090 Sum_probs=102.5
Q ss_pred CccCCCCccccchhHHHHHHHHhc---------CCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEc-cc--
Q 037483 12 KSETLKKLVRIDSCLEELRSLMDE---------GLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVD-EV-- 79 (693)
Q Consensus 12 ~~~~~~~~vGr~~~~~~l~~~l~~---------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~-~~-- 79 (693)
++..-.+++|.++.+++|.+.+.. ......+-|.|+|++|+|||++|+++++.....|- .+.. ..
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~---~v~~~~l~~ 89 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFF---SVSSSDLVS 89 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEE---EEEHHHHHT
T ss_pred CCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEE---EEchHHHhh
Confidence 344457899999999999988721 11113467999999999999999999987644331 1221 00
Q ss_pred ----------------CCCCCeEEEEEecCCChhh-------------hhHHhcCCC---cCCCCceEEEEeCChH----
Q 037483 80 ----------------GCNTKKVLLVIDDVVDIKQ-------------LEYLVGKRE---WFGSGSRIIITSRDEH---- 123 (693)
Q Consensus 80 ----------------~~~~~~~LlvlDdv~~~~~-------------~~~l~~~~~---~~~~~~~iliTtR~~~---- 123 (693)
....++.+|+||+++.... ...+...+. ....+..||.||....
T Consensus 90 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~ 169 (322)
T 3eie_A 90 KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDS 169 (322)
T ss_dssp TTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCH
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCH
Confidence 0234568999999974311 222222211 1234566666777632
Q ss_pred -HHHHcCCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCC-CchhHHHHhh
Q 037483 124 -LLKTHGVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGG-LPLALKVLGS 185 (693)
Q Consensus 124 -~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~~~ 185 (693)
+.. .....+.++..+.++-.+++..++........ ......+++.+.| .+-.|..+..
T Consensus 170 al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 170 AIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLT--KEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp HHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC--HHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred HHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC--HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 233 23457788899999999999988743322211 1234567788877 4445554443
No 183
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.42 E-value=1.3e-06 Score=90.05 Aligned_cols=167 Identities=15% Similarity=0.108 Sum_probs=103.4
Q ss_pred cCCCCccccchhHHHHHHHH-hcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccce---------------------
Q 037483 14 ETLKKLVRIDSCLEELRSLM-DEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEG--------------------- 71 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l-~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~--------------------- 71 (693)
..-.+++|.+..++.+.+++ ..+. ... +.|+|++|+||||+|+.++..+.....+
T Consensus 11 ~~~~~~vg~~~~~~~l~~~~~~~~~--~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 11 KSLNALSHNEELTNFLKSLSDQPRD--LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp CSGGGCCSCHHHHHHHHTTTTCTTC--CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred CCHHHhcCCHHHHHHHHHHHhhCCC--CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 34467999999999999888 4332 234 8999999999999999999864221100
Q ss_pred -----eEEEEcc-c-------------------CC---------CCCeEEEEEecCCChhh--hhHHhcCCCcCCCCceE
Q 037483 72 -----SSFLVDE-V-------------------GC---------NTKKVLLVIDDVVDIKQ--LEYLVGKREWFGSGSRI 115 (693)
Q Consensus 72 -----~~~~~~~-~-------------------~~---------~~~~~LlvlDdv~~~~~--~~~l~~~~~~~~~~~~i 115 (693)
...+... . +. .+++-++|+|+++..+. .+.+...+.....++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~ 167 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRL 167 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEE
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEE
Confidence 1111110 0 01 22566999999977432 33344333333456778
Q ss_pred EEEeCChH-HH-HHcCCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHHh
Q 037483 116 IITSRDEH-LL-KTHGVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVLG 184 (693)
Q Consensus 116 liTtR~~~-~~-~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 184 (693)
|++|.+.. +. ........+++++++.++..+++...+-......+ ..+....|++.++|.+..+..+.
T Consensus 168 Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 168 IMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLE-TKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp EEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEEC-CSHHHHHHHHHHTTCHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHcCCCHHHHHHHH
Confidence 87776532 21 11223468899999999999999887632221111 02345678889999987665543
No 184
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.41 E-value=6.6e-07 Score=94.42 Aligned_cols=163 Identities=18% Similarity=0.174 Sum_probs=98.6
Q ss_pred CCcc-ccchhH--HHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccce--eEEEEccc-----------C
Q 037483 17 KKLV-RIDSCL--EELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEG--SSFLVDEV-----------G 80 (693)
Q Consensus 17 ~~~v-Gr~~~~--~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~--~~~~~~~~-----------~ 80 (693)
+.|| |..... ..+....... . ....+.|+|++|+||||||+++++.+...++. ..++.... +
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~-~-~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~ 182 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHP-G-RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEG 182 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHST-T-SSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTT
T ss_pred hhcCCCCchHHHHHHHHHHHhCC-C-CCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcc
Confidence 3555 755443 2333333322 2 25679999999999999999999987665433 23443211 0
Q ss_pred --------CCCCeEEEEEecCCChh----hhhHHhcCCCc-CCCCceEEEEeCCh---------HHHHHcCCCceeeCCC
Q 037483 81 --------CNTKKVLLVIDDVVDIK----QLEYLVGKREW-FGSGSRIIITSRDE---------HLLKTHGVDELCEPNG 138 (693)
Q Consensus 81 --------~~~~~~LlvlDdv~~~~----~~~~l~~~~~~-~~~~~~iliTtR~~---------~~~~~~~~~~~~~l~~ 138 (693)
...+.-++++||++... ..+.+...+.. ...|..||+||... .+...+....++.+++
T Consensus 183 ~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~ 262 (440)
T 2z4s_A 183 KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEP 262 (440)
T ss_dssp CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCC
T ss_pred cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCC
Confidence 11156799999996543 22333322211 24577888888762 2334344346789999
Q ss_pred CCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHH
Q 037483 139 LNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVL 183 (693)
Q Consensus 139 L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 183 (693)
++.++..+++.+.+-......+ .+....|++.+.|.+..+..+
T Consensus 263 p~~e~r~~iL~~~~~~~~~~i~--~e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 263 PDEETRKSIARKMLEIEHGELP--EEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp CCHHHHHHHHHHHHHHHTCCCC--TTHHHHHHHHCCSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHhcCCCHHHHHHH
Confidence 9999999999887632111111 123556778888888665544
No 185
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.41 E-value=1.2e-06 Score=88.29 Aligned_cols=134 Identities=14% Similarity=0.135 Sum_probs=87.6
Q ss_pred CccccchhHHHHHHHHhcC------------CCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccc----eeEEEEcc-c-
Q 037483 18 KLVRIDSCLEELRSLMDEG------------LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFE----GSSFLVDE-V- 79 (693)
Q Consensus 18 ~~vGr~~~~~~l~~~l~~~------------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~----~~~~~~~~-~- 79 (693)
+++|.++.++.|.+.+... .......+.|+|++|+|||++|+++++.+..... ..+.+... .
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 5899999999998776531 1224567999999999999999999987643211 12222221 1
Q ss_pred ----C----------CCCCeEEEEEecCCCh-----------hhhhHHhcCCCcCCCCceEEEEeCChH----------H
Q 037483 80 ----G----------CNTKKVLLVIDDVVDI-----------KQLEYLVGKREWFGSGSRIIITSRDEH----------L 124 (693)
Q Consensus 80 ----~----------~~~~~~LlvlDdv~~~-----------~~~~~l~~~~~~~~~~~~iliTtR~~~----------~ 124 (693)
+ ...+..++++|+++.. .....+...+.....+..+|.||.... +
T Consensus 112 ~~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l 191 (309)
T 3syl_A 112 GQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGF 191 (309)
T ss_dssp CSSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTH
T ss_pred hhcccccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHH
Confidence 1 0113459999999733 334445544444456778888886532 2
Q ss_pred HHHcCCCceeeCCCCCHHHHHHHHHHhcc
Q 037483 125 LKTHGVDELCEPNGLNYDEALQLLNTKAF 153 (693)
Q Consensus 125 ~~~~~~~~~~~l~~L~~~ea~~l~~~~~~ 153 (693)
... ....+.+++++.++..+++...+-
T Consensus 192 ~~R--~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 192 RSR--IAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp HHH--EEEEEEECCCCHHHHHHHHHHHHH
T ss_pred HHh--CCeEEEcCCcCHHHHHHHHHHHHH
Confidence 222 136789999999999999988763
No 186
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.39 E-value=3.3e-06 Score=85.17 Aligned_cols=165 Identities=13% Similarity=0.116 Sum_probs=100.1
Q ss_pred cCCCCccccchhHHHHHHHHhc---------CCCCCeEEEEEEcCCCchHHHHHHHHHHHH-hcccceeEEEEc-cc---
Q 037483 14 ETLKKLVRIDSCLEELRSLMDE---------GLNDDVRMIGICGMGGLGKTTLVRAVYDLI-SHEFEGSSFLVD-EV--- 79 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~---------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~f~~~~~~~~-~~--- 79 (693)
..-.+++|.++.++.|.+.+.. ......+.|.|+|++|+|||+||+++++.. ...| +.+.. ..
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~---~~i~~~~l~~~ 85 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTF---FSISSSDLVSK 85 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEE---EEEECCSSCCS
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcE---EEEEhHHHHhh
Confidence 3446899999999999887632 111134689999999999999999999876 2222 11221 10
Q ss_pred --C-------------CCCCeEEEEEecCCChhh-------------hhHHhcCCCc---CCCCceEEEEeCCh-----H
Q 037483 80 --G-------------CNTKKVLLVIDDVVDIKQ-------------LEYLVGKREW---FGSGSRIIITSRDE-----H 123 (693)
Q Consensus 80 --~-------------~~~~~~LlvlDdv~~~~~-------------~~~l~~~~~~---~~~~~~iliTtR~~-----~ 123 (693)
+ ...++.+|++|+++.... ...+...+.. ...+..||.||... .
T Consensus 86 ~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~a 165 (322)
T 1xwi_A 86 WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSA 165 (322)
T ss_dssp SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHH
T ss_pred hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHH
Confidence 1 124578999999976510 1222221111 13455566666543 2
Q ss_pred HHHHcCCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCC-chhHHHHhh
Q 037483 124 LLKTHGVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGL-PLALKVLGS 185 (693)
Q Consensus 124 ~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~ 185 (693)
+.. .....+.++..+.++..+++..++........ ......|++.+.|. +-.|..++.
T Consensus 166 l~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~--~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 166 IRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT--EADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp HHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC--HHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred HHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 222 34467889999999999999887633221111 23356788888887 444555544
No 187
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.36 E-value=7.9e-06 Score=85.36 Aligned_cols=61 Identities=23% Similarity=0.348 Sum_probs=40.4
Q ss_pred ccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccC-ccccCCCCCCEEecccc
Q 037483 486 SLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLP-ASISGLLNLKELELEDC 549 (693)
Q Consensus 486 ~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~n 549 (693)
.|.+|.+|+.+++..+ ++. .-...|.+|++|+.+++..+ ++.++ ..+.+|++|+.+++..+
T Consensus 315 aF~~c~~L~~i~lp~~-v~~-I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 315 AFESCTSLVSIDLPYL-VEE-IGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTTCTTCCEECCCTT-CCE-ECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred hhcCCCCCCEEEeCCc-ccE-EhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 5677777887777644 321 12345777778888877665 66665 46677788888777654
No 188
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.36 E-value=4.1e-06 Score=85.15 Aligned_cols=153 Identities=15% Similarity=0.091 Sum_probs=100.9
Q ss_pred chhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccc---------------------ceeEEEEcc---
Q 037483 23 DSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEF---------------------EGSSFLVDE--- 78 (693)
Q Consensus 23 ~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f---------------------~~~~~~~~~--- 78 (693)
++..+.+...+..+. -.+.+.++|++|+|||++|+.+++.+.... +...++...
T Consensus 8 ~~~~~~l~~~i~~~~--~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~ 85 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR--GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGK 85 (334)
T ss_dssp HHHHHHHHHHHHTTC--CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTC
T ss_pred HHHHHHHHHHHHcCC--cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccC
Confidence 455667777776432 356899999999999999999998764221 223344321
Q ss_pred --c---------------CCCCCeEEEEEecCCChh--hhhHHhcCCCcCCCCceEEEEeCChH-HHH-HcCCCceeeCC
Q 037483 79 --V---------------GCNTKKVLLVIDDVVDIK--QLEYLVGKREWFGSGSRIIITSRDEH-LLK-THGVDELCEPN 137 (693)
Q Consensus 79 --~---------------~~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTtR~~~-~~~-~~~~~~~~~l~ 137 (693)
. ...+++-++|+|+++... ....+...+....+++.+|++|.+.. +.. -......++++
T Consensus 86 ~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~ 165 (334)
T 1a5t_A 86 NTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLA 165 (334)
T ss_dssp SSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred CCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCC
Confidence 1 134567899999997653 34555555554456677777776643 222 22335689999
Q ss_pred CCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHHh
Q 037483 138 GLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVLG 184 (693)
Q Consensus 138 ~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 184 (693)
++++++..+++.... ... .+.+..+++.++|.|..+..+.
T Consensus 166 ~~~~~~~~~~L~~~~---~~~----~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 166 PPPEQYAVTWLSREV---TMS----QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp CCCHHHHHHHHHHHC---CCC----HHHHHHHHHHTTTCHHHHHHTT
T ss_pred CCCHHHHHHHHHHhc---CCC----HHHHHHHHHHcCCCHHHHHHHh
Confidence 999999999998875 111 1234678899999997665443
No 189
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.35 E-value=1.4e-06 Score=88.33 Aligned_cols=162 Identities=16% Similarity=0.114 Sum_probs=94.2
Q ss_pred CCCCcc-ccchh--HHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc-----------C
Q 037483 15 TLKKLV-RIDSC--LEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV-----------G 80 (693)
Q Consensus 15 ~~~~~v-Gr~~~--~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~-----------~ 80 (693)
.-++|| |.+.. ...+..+..... .....+.|+|++|+||||||+++++.....-...+++.... +
T Consensus 9 ~f~~fv~g~~~~~a~~~~~~~~~~~~-~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (324)
T 1l8q_A 9 TLENFIVGEGNRLAYEVVKEALENLG-SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKG 87 (324)
T ss_dssp CSSSCCCCTTTHHHHHHHHHHHHTTT-TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHT
T ss_pred CcccCCCCCcHHHHHHHHHHHHhCcC-CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcC
Confidence 345565 64433 334445444332 13467999999999999999999987754322233443311 0
Q ss_pred -------CCCCeEEEEEecCCChhh----hhHHhcCCC-cCCCCceEEEEeCCh---------HHHHHcCCCceeeCCCC
Q 037483 81 -------CNTKKVLLVIDDVVDIKQ----LEYLVGKRE-WFGSGSRIIITSRDE---------HLLKTHGVDELCEPNGL 139 (693)
Q Consensus 81 -------~~~~~~LlvlDdv~~~~~----~~~l~~~~~-~~~~~~~iliTtR~~---------~~~~~~~~~~~~~l~~L 139 (693)
...+..++++||++.... .+.+...+. ....+..||+||... .+........++++++
T Consensus 88 ~~~~~~~~~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~- 166 (324)
T 1l8q_A 88 TINEFRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL- 166 (324)
T ss_dssp CHHHHHHHHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-
T ss_pred cHHHHHHHhcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-
Confidence 012367999999965431 222222211 113466788887642 2333333346789999
Q ss_pred CHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHH
Q 037483 140 NYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALK 181 (693)
Q Consensus 140 ~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 181 (693)
+.++..+++...+.......+ .+....+++++ |....+.
T Consensus 167 ~~~e~~~il~~~~~~~~~~l~--~~~l~~l~~~~-g~~r~l~ 205 (324)
T 1l8q_A 167 DNKTRFKIIKEKLKEFNLELR--KEVIDYLLENT-KNVREIE 205 (324)
T ss_dssp CHHHHHHHHHHHHHHTTCCCC--HHHHHHHHHHC-SSHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHhC-CCHHHHH
Confidence 999999999887743222111 23456677777 7765433
No 190
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.35 E-value=4.6e-06 Score=88.15 Aligned_cols=167 Identities=13% Similarity=0.126 Sum_probs=101.5
Q ss_pred CccCCCCccccchhHHHHHHHHhc---------CCCCCeEEEEEEcCCCchHHHHHHHHHHHH-hcccceeEEEEc-c--
Q 037483 12 KSETLKKLVRIDSCLEELRSLMDE---------GLNDDVRMIGICGMGGLGKTTLVRAVYDLI-SHEFEGSSFLVD-E-- 78 (693)
Q Consensus 12 ~~~~~~~~vGr~~~~~~l~~~l~~---------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~f~~~~~~~~-~-- 78 (693)
++..-.+++|.++..+.|.+.+.. ......+.|.|+|++|+|||+||+++++.. ...| +.+.. .
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~---~~v~~~~l~ 205 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTF---FSISSSDLV 205 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEE---EEECCC---
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCE---EEEeHHHHH
Confidence 334457899999999999887731 001134779999999999999999999876 2222 11111 0
Q ss_pred ---cC-------------CCCCeEEEEEecCCChh-------------hhhHHhcCCCcC---CCCceEEEEeCChH---
Q 037483 79 ---VG-------------CNTKKVLLVIDDVVDIK-------------QLEYLVGKREWF---GSGSRIIITSRDEH--- 123 (693)
Q Consensus 79 ---~~-------------~~~~~~LlvlDdv~~~~-------------~~~~l~~~~~~~---~~~~~iliTtR~~~--- 123 (693)
.+ ....+.+|+||+++... ....+...+... ..+..||.||....
T Consensus 206 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld 285 (444)
T 2zan_A 206 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLD 285 (444)
T ss_dssp ------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSC
T ss_pred hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccC
Confidence 01 12356899999997651 123344433321 34566776776542
Q ss_pred --HHHHcCCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCC-chhHHHHhh
Q 037483 124 --LLKTHGVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGL-PLALKVLGS 185 (693)
Q Consensus 124 --~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~ 185 (693)
+.. .....+.++..+.++..+++..++........ ......|++.+.|. +-.|..+..
T Consensus 286 ~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~--~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 286 SAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT--EADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp HHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECC--HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 222 33457788888999999999887633221111 12356678888884 445555443
No 191
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.34 E-value=7.8e-08 Score=88.73 Aligned_cols=40 Identities=15% Similarity=0.126 Sum_probs=21.1
Q ss_pred ccCCCCccEEecCCCcccc-----CCCccccCCCCCEEEc--cCCCC
Q 037483 418 LGQVEILEELDISGTTIRE-----PPSSIFAIKNLKKLSF--SGCSG 457 (693)
Q Consensus 418 l~~l~~L~~L~l~~n~i~~-----lp~~~~~l~~L~~L~l--~~~~~ 457 (693)
+...++|++|+|++|.|+. +...+...++|++|++ ++|.+
T Consensus 89 L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i 135 (185)
T 1io0_A 89 LKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPL 135 (185)
T ss_dssp HHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCC
T ss_pred HHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCC
Confidence 3444555666666665552 2334455556666666 44544
No 192
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.33 E-value=9.9e-07 Score=81.39 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=42.2
Q ss_pred CCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 15 TLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 15 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
....++||+++++++.+.+... ..+.+.|+|++|+|||++|+++++....
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~---~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSRR---TKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS---SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccchhhcchHHHHHHHHHHhCC---CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4467999999999999998753 3456799999999999999999987644
No 193
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.32 E-value=6e-06 Score=85.94 Aligned_cols=166 Identities=17% Similarity=0.157 Sum_probs=98.5
Q ss_pred ccCCCCccccchhHHHHHHHHhcC---------CCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEc-cc---
Q 037483 13 SETLKKLVRIDSCLEELRSLMDEG---------LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVD-EV--- 79 (693)
Q Consensus 13 ~~~~~~~vGr~~~~~~l~~~l~~~---------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~-~~--- 79 (693)
+..-.+++|.+..++.+.+.+... .....+.|.|+|++|+|||++|++++++....| +.+.. ..
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~---~~v~~~~l~~~ 187 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATF---FNISAASLTSK 187 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEE---EEECSCCC---
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcE---EEeeHHHhhcc
Confidence 344568999999999999887321 011246799999999999999999988754322 11111 00
Q ss_pred --C-------------CCCCeEEEEEecCCChh-------------hhhHHhcCCC----cCCCCceEEEEeCChH----
Q 037483 80 --G-------------CNTKKVLLVIDDVVDIK-------------QLEYLVGKRE----WFGSGSRIIITSRDEH---- 123 (693)
Q Consensus 80 --~-------------~~~~~~LlvlDdv~~~~-------------~~~~l~~~~~----~~~~~~~iliTtR~~~---- 123 (693)
+ ....+.+|+||+++... ....+...+. .......||.||....
T Consensus 188 ~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~ 267 (389)
T 3vfd_A 188 YVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDE 267 (389)
T ss_dssp ----CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCH
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCH
Confidence 0 12345799999996540 0112221111 1123455666666532
Q ss_pred -HHHHcCCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCch-hHHHHhh
Q 037483 124 -LLKTHGVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPL-ALKVLGS 185 (693)
Q Consensus 124 -~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~ 185 (693)
+.. .....+.++..+.++..+++...+-....... .+....+++.+.|..- ++..+..
T Consensus 268 ~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~--~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 268 AVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT--QKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp HHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC--HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 222 23356889999999999999887643222211 1245678888888554 5555543
No 194
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.32 E-value=2e-05 Score=82.33 Aligned_cols=63 Identities=14% Similarity=0.285 Sum_probs=36.0
Q ss_pred ccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccC-ccccCCCCCCEEecccccc
Q 037483 486 SLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLP-ASISGLLNLKELELEDCAL 551 (693)
Q Consensus 486 ~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~n~~ 551 (693)
.|.+|.+|+.+++..+ ++ ..-...|.+|.+|+++.|..+ ++.+. ..+.+|++|+.+++.++..
T Consensus 306 aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 306 VFAGCISLKSIDIPEG-IT-QILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp TTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred eecCCCCcCEEEeCCc-cc-EehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 4566666666666543 21 111244666666776666433 55554 3556666777776666543
No 195
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.31 E-value=1.4e-05 Score=83.36 Aligned_cols=201 Identities=16% Similarity=0.101 Sum_probs=104.2
Q ss_pred hhhcCccccceeccCCcCceeec-CCcCCCCCCCEEecCCCCCCccCCCCCCCCccccccc---------ccccCCCCcc
Q 037483 356 EIVASMEDLSELYLDGTFITKLP-LSIELLTGLELLNLNDCKNLLRLPSSIDGCFKLENVS---------ETLGQVEILE 425 (693)
Q Consensus 356 ~~~~~l~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~lp---------~~l~~l~~L~ 425 (693)
..|.++++|+.+.+..+ +..++ ..+.++.+|+.+.+..+ ....-...+.+|..|+.+. .......+|+
T Consensus 156 ~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~ 233 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVK 233 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCC
T ss_pred hhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCc
Confidence 34666677777777654 23333 23566677777776654 2222233455555555331 1122234555
Q ss_pred EEecCCCccccC-CCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCeeeCCCCCCC
Q 037483 426 ELDISGTTIREP-PSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCGLG 504 (693)
Q Consensus 426 ~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~ 504 (693)
.+.+..+ ++.+ ...+..+.+|+.+.+..+...-.......... +..............+..+.+|+.+.+..+ ++
T Consensus 234 ~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~--l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~ 309 (394)
T 4fs7_A 234 NIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSG--LKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-VK 309 (394)
T ss_dssp EEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTT--CCEEEECSSEECTTTTTTCTTCCEEEECTT-CC
T ss_pred eEEECCC-ceecccccccccccceeEEcCCCcceeeccccccccc--cceeccCceeeccccccccccccccccccc-cc
Confidence 5555432 2222 23445566666666654422111000000000 000000000001125778889999998765 31
Q ss_pred CCCCCccCCCCCCCCEEeCCCCCCcccC-ccccCCCCCCEEecccccceee---ccCccccccc
Q 037483 505 EGAIPNDIGNLCSLKELYLSKNNFVTLP-ASISGLLNLKELELEDCALKLR---KSDCTIIKCI 564 (693)
Q Consensus 505 ~~~~p~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~n~~~~~---~~~~~~l~~l 564 (693)
..-...|.++++|+.++|..+ ++.++ ..+.+|.+|+.+++..+-..+. ..+|.+|+.+
T Consensus 310 -~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i 371 (394)
T 4fs7_A 310 -FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLSLRKIGANAFQGCINLKKV 371 (394)
T ss_dssp -EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTTCCEECTTTBTTCTTCCEE
T ss_pred -eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECccccEehHHHhhCCCCCCEE
Confidence 122356888999999999754 77776 5788999999999987633332 2345555444
No 196
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.30 E-value=2.2e-06 Score=85.13 Aligned_cols=134 Identities=14% Similarity=0.113 Sum_probs=84.9
Q ss_pred CccccchhHHHHHHHHhcC-CCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccc-------eeEEEEccc----------
Q 037483 18 KLVRIDSCLEELRSLMDEG-LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFE-------GSSFLVDEV---------- 79 (693)
Q Consensus 18 ~~vGr~~~~~~l~~~l~~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-------~~~~~~~~~---------- 79 (693)
.+.|||+++++|...|... ..+....+.|+|++|+|||++|+++++++..... ..+.+....
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 4899999999999888662 2335778999999999999999999998753211 122232100
Q ss_pred ------C---------------------CCCCeEEEEEecCCChhhhhHHhcCCCcC-CCCc--eEEEEeCChH-----H
Q 037483 80 ------G---------------------CNTKKVLLVIDDVVDIKQLEYLVGKREWF-GSGS--RIIITSRDEH-----L 124 (693)
Q Consensus 80 ------~---------------------~~~~~~LlvlDdv~~~~~~~~l~~~~~~~-~~~~--~iliTtR~~~-----~ 124 (693)
+ ..+++++++||+++...+-+.+...+.|. ...+ .||.++...+ +
T Consensus 101 I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L 180 (318)
T 3te6_A 101 IWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQI 180 (318)
T ss_dssp HHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHH
T ss_pred HHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhc
Confidence 0 14567999999998754322222222111 1222 3333443321 1
Q ss_pred ----HHHcCCCceeeCCCCCHHHHHHHHHHhc
Q 037483 125 ----LKTHGVDELCEPNGLNYDEALQLLNTKA 152 (693)
Q Consensus 125 ----~~~~~~~~~~~l~~L~~~ea~~l~~~~~ 152 (693)
...+. ...+.+++.+.+|-.+++.+++
T Consensus 181 ~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 181 NIMPSLKAH-FTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp HTCHHHHTT-EEEEECCCCCHHHHHHHHHHHH
T ss_pred chhhhccCC-ceEEEeCCCCHHHHHHHHHHHH
Confidence 12222 2468999999999999998876
No 197
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.26 E-value=1.8e-05 Score=80.77 Aligned_cols=162 Identities=15% Similarity=0.149 Sum_probs=100.1
Q ss_pred CCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc-cceeEE-EEcc--c-----------
Q 037483 15 TLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHE-FEGSSF-LVDE--V----------- 79 (693)
Q Consensus 15 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~-~~~~--~----------- 79 (693)
.-.+++|.+..++.|...+..+. ...+.++|++|+||||+|+.+++.+... +...+. +... .
T Consensus 23 ~~~~~~g~~~~~~~L~~~i~~g~---~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~ 99 (340)
T 1sxj_C 23 TLDEVYGQNEVITTVRKFVDEGK---LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKD 99 (340)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTTC---CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHH
T ss_pred cHHHhcCcHHHHHHHHHHHhcCC---CceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHH
Confidence 33568899999999998887542 2238999999999999999999875321 111111 1100 0
Q ss_pred ------CCCCCeEEEEEecCCCh--hhhhHHhcCCCcCCCCceEEEEeCChH-HH-HHcCCCceeeCCCCCHHHHHHHHH
Q 037483 80 ------GCNTKKVLLVIDDVVDI--KQLEYLVGKREWFGSGSRIIITSRDEH-LL-KTHGVDELCEPNGLNYDEALQLLN 149 (693)
Q Consensus 80 ------~~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTtR~~~-~~-~~~~~~~~~~l~~L~~~ea~~l~~ 149 (693)
...+.+-++|+|+++.. +..+.+...+......+++|++|.... +. ........+++.+++.++..+.+.
T Consensus 100 ~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~ 179 (340)
T 1sxj_C 100 FASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIA 179 (340)
T ss_dssp HHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHH
T ss_pred HHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHH
Confidence 02234778999998653 333444443333345667777775532 11 111224578999999999999887
Q ss_pred HhcccCCCCchHHHHHHHHHHHHhCCCchhHH
Q 037483 150 TKAFKTHKPLEECAKLSERVPQYAGGLPLALK 181 (693)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 181 (693)
..+-......+ .+..+.+++.++|.+.-+.
T Consensus 180 ~~~~~~~~~i~--~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 180 NVLVHEKLKLS--PNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp HHHHTTTCCBC--HHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHcCCCCC--HHHHHHHHHHcCCCHHHHH
Confidence 76522221111 2345678888999887443
No 198
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.19 E-value=1.4e-06 Score=76.71 Aligned_cols=102 Identities=15% Similarity=0.059 Sum_probs=62.2
Q ss_pred CCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhc-ccceeEEEEc-ccC---------CCCCe
Q 037483 17 KKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISH-EFEGSSFLVD-EVG---------CNTKK 85 (693)
Q Consensus 17 ~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~-~~~---------~~~~~ 85 (693)
++++|++..++++.+.+..... ...-|.|+|.+|+|||++|+++++.... ..+.+ +.. ... .....
T Consensus 1 ~~iiG~s~~~~~~~~~~~~~a~-~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v--~~~~~~~~~~~~~~~~~~a~~ 77 (145)
T 3n70_A 1 VELIGRSEWINQYRRRLQQLSE-TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV--YRELTPDNAPQLNDFIALAQG 77 (145)
T ss_dssp ---CCSSHHHHHHHHHHHHHTT-CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE--EEECCTTTSSCHHHHHHHHTT
T ss_pred CCceeCCHHHHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE--EECCCCCcchhhhcHHHHcCC
Confidence 3689999999999988865333 2344789999999999999999875422 22322 222 110 00123
Q ss_pred EEEEEecCCChh--hhhHHhcCCCcCCCCceEEEEeCC
Q 037483 86 VLLVIDDVVDIK--QLEYLVGKREWFGSGSRIIITSRD 121 (693)
Q Consensus 86 ~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTtR~ 121 (693)
-.+++|+++... ....+...+.......++|.||..
T Consensus 78 g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 78 GTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp SCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred cEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 478999997653 233333332323445678777765
No 199
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.12 E-value=1.5e-05 Score=80.90 Aligned_cols=244 Identities=18% Similarity=0.202 Sum_probs=130.1
Q ss_pred CCCCccccchhHHHHHHHHhcC--CCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc-----------CC
Q 037483 15 TLKKLVRIDSCLEELRSLMDEG--LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV-----------GC 81 (693)
Q Consensus 15 ~~~~~vGr~~~~~~l~~~l~~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~-----------~~ 81 (693)
.-..++|.+..++.+...+..+ .+.....++|+|++|+||||||+.++..+...|.. ..... ..
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~---~sg~~~~~~~~l~~~~~~ 99 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHV---TSGPVLVKQGDMAAILTS 99 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEE---EETTTCCSHHHHHHHHHH
T ss_pred cHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE---EechHhcCHHHHHHHHHH
Confidence 3467899998888888777542 11234679999999999999999999987443221 11110 01
Q ss_pred CCCeEEEEEecCCChh--hhhHHhcCCCcC--------C----------CCceEE-EEeCChHHHHHc--CCCceeeCCC
Q 037483 82 NTKKVLLVIDDVVDIK--QLEYLVGKREWF--------G----------SGSRII-ITSRDEHLLKTH--GVDELCEPNG 138 (693)
Q Consensus 82 ~~~~~LlvlDdv~~~~--~~~~l~~~~~~~--------~----------~~~~il-iTtR~~~~~~~~--~~~~~~~l~~ 138 (693)
..++.++++|+++... ..+.+....... + +...++ .|++...+.... .......+++
T Consensus 100 ~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~ 179 (334)
T 1in4_A 100 LERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDF 179 (334)
T ss_dssp CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEEEECCC
T ss_pred ccCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCceeeCCC
Confidence 1234577889886432 222222111000 0 112233 344433221111 2233578999
Q ss_pred CCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCchhHHHHhhhh------cCC---ChHHHHHHHHHhccCCCch
Q 037483 139 LNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLPLALKVLGSFL------NGR---STDQWRSTLERLKRDPPNK 209 (693)
Q Consensus 139 L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l------~~~---~~~~w~~~l~~l~~~~~~~ 209 (693)
.+.++-.+++.+.+-...... ..+.+..|++.+.|.|..+..+...+ .+. +.+..+.+++.+..
T Consensus 180 ~~~~~l~~iL~~~~~~~~~~~--~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~~----- 252 (334)
T 1in4_A 180 YTVKELKEIIKRAASLMDVEI--EDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNI----- 252 (334)
T ss_dssp CCHHHHHHHHHHHHHHTTCCB--CHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHTC-----
T ss_pred CCHHHHHHHHHHHHHHcCCCc--CHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCC-----
Confidence 999999999988763222221 23447789999999997654443222 111 22333333333221
Q ss_pred HHHHHHHhhccCcHhhHhHHhhhhcccC--CCCHHHHHHHHHHcCCCcc---chhh-hhhcCCcEEEeCCCcEeh
Q 037483 210 IMSILQISFDGLQDSEKKIFLDVACFFK--WKSREYVTKILEACGFSPV---IGIE-VLIEKSLLIVDEDNRLQM 278 (693)
Q Consensus 210 ~~~~l~~s~~~L~~~~~~~~~~la~f~~--~~~~~~l~~~~~~~~~~~~---~~l~-~L~~~sLi~~~~~~~~~~ 278 (693)
.-..++...+.++..++-... +...+.+.... +..+. ...+ .|...++++....++...
T Consensus 253 -------~~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~---~~~~~t~~~~~~~~l~~~g~i~~~~~gr~~~ 317 (334)
T 1in4_A 253 -------DDEGLDEFDRKILKTIIEIYRGGPVGLNALAASL---GVEADTLSEVYEPYLLQAGFLARTPRGRIVT 317 (334)
T ss_dssp -------CTTCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHH---TSCHHHHHHHTHHHHHHTTSEEEETTEEEEC
T ss_pred -------CcCCCCHHHHHHHHHHHHHhCCCcchHHHHHHHh---CCCcchHHHHHHHHHHHcCCeecccccHHhh
Confidence 112455555555554443222 22334343332 32221 1122 688899999887766543
No 200
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.12 E-value=1.2e-05 Score=80.45 Aligned_cols=159 Identities=16% Similarity=0.175 Sum_probs=95.4
Q ss_pred cCCCCccccchhHHHHHHHHhcC----------CCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEc-c----
Q 037483 14 ETLKKLVRIDSCLEELRSLMDEG----------LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVD-E---- 78 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~-~---- 78 (693)
..-.+++|.++.+++|.+.+... .-...+.|.|+|++|+|||++|+++++.....| +.+.. .
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~---i~v~~~~l~~~ 88 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF---ISIKGPELLTM 88 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEE---EEECHHHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCE---EEEEhHHHHhh
Confidence 33467999999999998877531 112356799999999999999999998764322 12221 0
Q ss_pred -cC-------------CCCCeEEEEEecCCChhh----------------hhHHhcCCCc--CCCCceEEEEeCChHHHH
Q 037483 79 -VG-------------CNTKKVLLVIDDVVDIKQ----------------LEYLVGKREW--FGSGSRIIITSRDEHLLK 126 (693)
Q Consensus 79 -~~-------------~~~~~~LlvlDdv~~~~~----------------~~~l~~~~~~--~~~~~~iliTtR~~~~~~ 126 (693)
.+ ....+.++++|+++.... ...+...+.. ...+..||.||.......
T Consensus 89 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld 168 (301)
T 3cf0_A 89 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID 168 (301)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSC
T ss_pred hcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccC
Confidence 01 123568999999974311 1222222211 123566777776653221
Q ss_pred H--c---CCCceeeCCCCCHHHHHHHHHHhcccCCCC-chHHHHHHHHHHHHhCCCchh
Q 037483 127 T--H---GVDELCEPNGLNYDEALQLLNTKAFKTHKP-LEECAKLSERVPQYAGGLPLA 179 (693)
Q Consensus 127 ~--~---~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~-~~~~~~~~~~i~~~~~g~Pla 179 (693)
. . .....+.++..+.++-.+++...+-..... ..+ ...+++.+.|.|-+
T Consensus 169 ~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 169 PAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCCHH
T ss_pred hHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch----HHHHHHHcCCCCHH
Confidence 1 1 234678999999999999887776322111 111 23455567776643
No 201
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.10 E-value=1.4e-05 Score=80.33 Aligned_cols=130 Identities=15% Similarity=0.145 Sum_probs=79.7
Q ss_pred CCccccchhHHHHHHHHhcC-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEc-cc---C-
Q 037483 17 KKLVRIDSCLEELRSLMDEG-----------LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVD-EV---G- 80 (693)
Q Consensus 17 ~~~vGr~~~~~~l~~~l~~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~-~~---~- 80 (693)
..++|+++.++.+...+... .......+.|+|++|+|||++|+++++.....| +.+.. .. +
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~---~~i~~~~~~~~~~ 91 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPF---IKVEATKFTEVGY 91 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCE---EEEEGGGGSSCCS
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCE---EEEcchhcccCCc
Confidence 57899999999998877541 011245688999999999999999998764322 11211 00 0
Q ss_pred ---------------C------CCCeEEEEEecCCChhh--------------hhHHhcCCCc----------CCCCceE
Q 037483 81 ---------------C------NTKKVLLVIDDVVDIKQ--------------LEYLVGKREW----------FGSGSRI 115 (693)
Q Consensus 81 ---------------~------~~~~~LlvlDdv~~~~~--------------~~~l~~~~~~----------~~~~~~i 115 (693)
. ...+.++++|+++.... ...+...+.. ...+..+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~ 171 (310)
T 1ofh_A 92 VGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILF 171 (310)
T ss_dssp GGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEE
T ss_pred cCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEE
Confidence 0 02367999999965421 1222221111 1134555
Q ss_pred EEEeC----C-----hHHHHHcCCCceeeCCCCCHHHHHHHHHHh
Q 037483 116 IITSR----D-----EHLLKTHGVDELCEPNGLNYDEALQLLNTK 151 (693)
Q Consensus 116 liTtR----~-----~~~~~~~~~~~~~~l~~L~~~ea~~l~~~~ 151 (693)
|.|+. . +.+...+ ...+.+++++.++..+++...
T Consensus 172 i~~~~~~~~~~~~l~~~l~~R~--~~~i~~~~~~~~~~~~il~~~ 214 (310)
T 1ofh_A 172 IASGAFQVARPSDLIPELQGRL--PIRVELTALSAADFERILTEP 214 (310)
T ss_dssp EEEECCSSSCGGGSCHHHHHTC--CEEEECCCCCHHHHHHHHHSS
T ss_pred EEcCCcccCCcccCCHHHHhhC--CceEEcCCcCHHHHHHHHHhh
Confidence 66642 1 2233322 356899999999999998753
No 202
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.05 E-value=4.4e-05 Score=77.75 Aligned_cols=155 Identities=17% Similarity=0.209 Sum_probs=96.8
Q ss_pred CCCccccchhHHHHHHHHhcC----------CCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEc-cc-----
Q 037483 16 LKKLVRIDSCLEELRSLMDEG----------LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVD-EV----- 79 (693)
Q Consensus 16 ~~~~vGr~~~~~~l~~~l~~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~-~~----- 79 (693)
-.++.|.++..++|.+.+... .-..++-|.++|+||.|||.||++++......|- .+.. +.
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~---~v~~s~l~sk~v 223 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFI---RVSGAELVQKYI 223 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEE---EEEGGGGSCSST
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCce---EEEhHHhhcccc
Confidence 367899999999998866431 1123577999999999999999999997655442 1221 11
Q ss_pred -------------CCCCCeEEEEEecCCChhh----------------hhHHhcCCCcC--CCCceEEEEeCChH-----
Q 037483 80 -------------GCNTKKVLLVIDDVVDIKQ----------------LEYLVGKREWF--GSGSRIIITSRDEH----- 123 (693)
Q Consensus 80 -------------~~~~~~~LlvlDdv~~~~~----------------~~~l~~~~~~~--~~~~~iliTtR~~~----- 123 (693)
.....++++++|+++.... +..++..+... ..+..||.||....
T Consensus 224 Gese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpA 303 (405)
T 4b4t_J 224 GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPA 303 (405)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHH
T ss_pred chHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHh
Confidence 1345689999999964310 12222222211 23445666776543
Q ss_pred HHHHcCCCceeeCCCCCHHHHHHHHHHhcccCCCC-chHHHHHHHHHHHHhCCCc
Q 037483 124 LLKTHGVDELCEPNGLNYDEALQLLNTKAFKTHKP-LEECAKLSERVPQYAGGLP 177 (693)
Q Consensus 124 ~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~-~~~~~~~~~~i~~~~~g~P 177 (693)
+......+..+.++..+.++-.++|+.+.-.-... ..+ ...+++.+.|.-
T Consensus 304 llRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 304 LLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp HHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCC
T ss_pred HcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCC
Confidence 22222446788999999999999998776322211 112 345677777754
No 203
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.03 E-value=1.7e-06 Score=83.71 Aligned_cols=81 Identities=21% Similarity=0.239 Sum_probs=50.5
Q ss_pred eccCCcCceeecCC----cCCCCCCCEEecCCCCCCccCCCCCCCCcccccccccccCCCCccEEecCCCccccCCCccc
Q 037483 367 LYLDGTFITKLPLS----IELLTGLELLNLNDCKNLLRLPSSIDGCFKLENVSETLGQVEILEELDISGTTIREPPSSIF 442 (693)
Q Consensus 367 L~L~~~~l~~l~~~----~~~l~~L~~L~L~~~~~~~~lp~~~~~~~~L~~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~ 442 (693)
++++.|....++.. ..++++|+.|+|++|.+. .+..+|..+..+++|+.|+|++|.++++ ..+.
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~-----------~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~ 215 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLY-----------RLDDMSSIVQKAPNLKILNLSGNELKSE-RELD 215 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCC-----------CCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGG
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCC-----------CCccchhHHhhCCCCCEEECCCCccCCc-hhhh
Confidence 45555544333221 145677888888877542 3334445566778888888888888766 3344
Q ss_pred cCC--CCCEEEccCCCCCC
Q 037483 443 AIK--NLKKLSFSGCSGPP 459 (693)
Q Consensus 443 ~l~--~L~~L~l~~~~~~~ 459 (693)
.++ +|+.|+|++|.+..
T Consensus 216 ~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 216 KIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp GGTTSCCSEEECTTSTTGG
T ss_pred hcccCCcceEEccCCcCcc
Confidence 444 88888888887653
No 204
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.00 E-value=1.7e-06 Score=83.78 Aligned_cols=55 Identities=25% Similarity=0.294 Sum_probs=27.6
Q ss_pred CCCCcCCeeeCCCCCCCCCCCCccCCCCC--CCCEEeCCCCCCc-ccC-------ccccCCCCCCEEe
Q 037483 488 SGLCSLSKLDLSYCGLGEGAIPNDIGNLC--SLKELYLSKNNFV-TLP-------ASISGLLNLKELE 545 (693)
Q Consensus 488 ~~l~~L~~L~ls~n~l~~~~~p~~l~~l~--~L~~L~L~~n~l~-~lp-------~~l~~l~~L~~L~ 545 (693)
..+++|+.|+|++|.+++ + ..+..+. +|++|+|++|.++ .+| ..+..+++|+.||
T Consensus 193 ~~l~~L~~L~Ls~N~i~~--~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 193 QKAPNLKILNLSGNELKS--E-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHSTTCCEEECTTSCCCS--G-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hhCCCCCEEECCCCccCC--c-hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 344555555555555532 1 1222222 5666666666665 233 1245566666665
No 205
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.97 E-value=4.2e-05 Score=81.31 Aligned_cols=131 Identities=15% Similarity=0.159 Sum_probs=79.0
Q ss_pred CCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccc-----ceeEEEEcc-----cC----
Q 037483 15 TLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEF-----EGSSFLVDE-----VG---- 80 (693)
Q Consensus 15 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-----~~~~~~~~~-----~~---- 80 (693)
..+++|||+++++++.+.+.... ..-+.|+|++|+|||++|+.+++.+...+ ....++... .|
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~~---~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~e~ 254 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRRT---KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFED 254 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSS---SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CT
T ss_pred CCCCccCcHHHHHHHHHHHhccC---CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCccccchHHH
Confidence 34679999999999999997633 23568999999999999999999874322 111111110 00
Q ss_pred ---------CCCCeEEEEEecCCChhhhhHHhcCCCcCCCCceEEEEeCChHHHHH-------cCCCceeeCCCCCHHHH
Q 037483 81 ---------CNTKKVLLVIDDVVDIKQLEYLVGKREWFGSGSRIIITSRDEHLLKT-------HGVDELCEPNGLNYDEA 144 (693)
Q Consensus 81 ---------~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~iliTtR~~~~~~~-------~~~~~~~~l~~L~~~ea 144 (693)
...++.++++| ...+....+...+. ....++|.+|........ ......+.++..+.++.
T Consensus 255 ~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~ 330 (468)
T 3pxg_A 255 RLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDES 330 (468)
T ss_dssp THHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHH
T ss_pred HHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHH
Confidence 12346788999 22222233433332 224556665554431110 11234689999999999
Q ss_pred HHHHHHhc
Q 037483 145 LQLLNTKA 152 (693)
Q Consensus 145 ~~l~~~~~ 152 (693)
.+++...+
T Consensus 331 ~~iL~~~~ 338 (468)
T 3pxg_A 331 IQILQGLR 338 (468)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHH
Confidence 99998765
No 206
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.97 E-value=5.1e-05 Score=74.31 Aligned_cols=49 Identities=18% Similarity=0.116 Sum_probs=36.0
Q ss_pred CCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 17 KKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 17 ~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
+.++|.+..+.++.+.+..... ....|.|+|.+|+|||++|+++++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~-~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP-LDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT-SCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 5689999999998877765322 234688999999999999999998643
No 207
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.96 E-value=3.9e-05 Score=79.23 Aligned_cols=155 Identities=15% Similarity=0.182 Sum_probs=95.2
Q ss_pred CCCccccchhHHHHHHHHhc----------CCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEc-cc-----
Q 037483 16 LKKLVRIDSCLEELRSLMDE----------GLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVD-EV----- 79 (693)
Q Consensus 16 ~~~~vGr~~~~~~l~~~l~~----------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~-~~----- 79 (693)
-.++.|.++..++|.+.+.. -.-..++-|.++|++|.|||.||++++.+....|- .+.. +.
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi---~vs~s~L~sk~v 284 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFI---RVIGSELVQKYV 284 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEE---EEEGGGGCCCSS
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeE---EEEhHHhhcccC
Confidence 36799999999999876532 01124678999999999999999999997755432 1111 11
Q ss_pred -------------CCCCCeEEEEEecCCChhh----------------hhHHhcCCCcC--CCCceEEEEeCChH-----
Q 037483 80 -------------GCNTKKVLLVIDDVVDIKQ----------------LEYLVGKREWF--GSGSRIIITSRDEH----- 123 (693)
Q Consensus 80 -------------~~~~~~~LlvlDdv~~~~~----------------~~~l~~~~~~~--~~~~~iliTtR~~~----- 123 (693)
.....++++++|+++.... ...++..+... ..+..||.||....
T Consensus 285 Gesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpA 364 (467)
T 4b4t_H 285 GEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPA 364 (467)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHH
T ss_pred CHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChh
Confidence 1345689999999964310 11122222111 23445566665432
Q ss_pred HHHHcCCCceeeCCCCCHHHHHHHHHHhcccCCCC-chHHHHHHHHHHHHhCCCc
Q 037483 124 LLKTHGVDELCEPNGLNYDEALQLLNTKAFKTHKP-LEECAKLSERVPQYAGGLP 177 (693)
Q Consensus 124 ~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~-~~~~~~~~~~i~~~~~g~P 177 (693)
+...-..+..++++..+.++-.++|+.++-.-... ..+ ...|++.+.|.-
T Consensus 365 LlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 365 LLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNST 415 (467)
T ss_dssp HHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSCC
T ss_pred hhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCCC
Confidence 22222356788999999999999998776322111 112 245677777754
No 208
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.95 E-value=2.3e-05 Score=90.14 Aligned_cols=132 Identities=14% Similarity=0.126 Sum_probs=79.6
Q ss_pred CCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccc------ceeEEEEc-c-c-------
Q 037483 15 TLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEF------EGSSFLVD-E-V------- 79 (693)
Q Consensus 15 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~-~-~------- 79 (693)
.-+++|||+++++++.+.+.... ..-+.|+|++|+|||++|+.+++.+.... ...++..+ . .
T Consensus 168 ~ld~viGr~~~i~~l~~~l~~~~---~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~ 244 (854)
T 1qvr_A 168 KLDPVIGRDEEIRRVIQILLRRT---KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYR 244 (854)
T ss_dssp CSCCCCSCHHHHHHHHHHHHCSS---CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC----------
T ss_pred CCcccCCcHHHHHHHHHHHhcCC---CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccc
Confidence 34679999999999999987633 34578999999999999999999874311 11222111 0 0
Q ss_pred --------------CCCCCeEEEEEecCCChhh-------h---hHHhcCCCcCCCCceEEEEeCChHHHHH------cC
Q 037483 80 --------------GCNTKKVLLVIDDVVDIKQ-------L---EYLVGKREWFGSGSRIIITSRDEHLLKT------HG 129 (693)
Q Consensus 80 --------------~~~~~~~LlvlDdv~~~~~-------~---~~l~~~~~~~~~~~~iliTtR~~~~~~~------~~ 129 (693)
...+++.++++|+++.... + ..+...+. ..+..+|.+|........ ..
T Consensus 245 g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~I~at~~~~~~~~~~d~aL~r 322 (854)
T 1qvr_A 245 GEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLIGATTLDEYREIEKDPALER 322 (854)
T ss_dssp -CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCCEEEEECHHHHHHHTTCTTTCS
T ss_pred hHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEEEEecCchHHhhhccCHHHHh
Confidence 0224678999999976531 1 11111111 234456666654432111 11
Q ss_pred CCceeeCCCCCHHHHHHHHHHh
Q 037483 130 VDELCEPNGLNYDEALQLLNTK 151 (693)
Q Consensus 130 ~~~~~~l~~L~~~ea~~l~~~~ 151 (693)
....+.++.++.++..+++...
T Consensus 323 Rf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 323 RFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp CCCCEEECCCCHHHHHHHHHHH
T ss_pred CCceEEeCCCCHHHHHHHHHhh
Confidence 1245889999999999998754
No 209
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.91 E-value=7.6e-05 Score=84.92 Aligned_cols=132 Identities=16% Similarity=0.167 Sum_probs=84.1
Q ss_pred CCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc------cceeEEEEccc---------C
Q 037483 16 LKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHE------FEGSSFLVDEV---------G 80 (693)
Q Consensus 16 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~~~~---------~ 80 (693)
-+.++||+++++++.+.+.... ..-+.|+|.+|+|||++|+.+++.+... ....++..+.. +
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~~---~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g 261 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRRR---KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRG 261 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS---SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSS
T ss_pred CCCccCCHHHHHHHHHHHhccC---CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccc
Confidence 3579999999999999987642 3457899999999999999999876332 12222322100 0
Q ss_pred -------------CCCCeEEEEEecCCChh--------h---hhHHhcCCCcCCCCceEEEEeCChHHHHHc-------C
Q 037483 81 -------------CNTKKVLLVIDDVVDIK--------Q---LEYLVGKREWFGSGSRIIITSRDEHLLKTH-------G 129 (693)
Q Consensus 81 -------------~~~~~~LlvlDdv~~~~--------~---~~~l~~~~~~~~~~~~iliTtR~~~~~~~~-------~ 129 (693)
...++.++++|+++... . ...+...+. ....++|.+|......... .
T Consensus 262 ~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at~~~~~~~~~~~d~aL~~ 339 (758)
T 1r6b_X 262 DFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEFSNIFEKDRALAR 339 (758)
T ss_dssp CHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEECHHHHHCCCCCTTSSGG
T ss_pred hHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEeCchHHhhhhhcCHHHHh
Confidence 12346899999997551 1 222333322 2345666666654322111 1
Q ss_pred CCceeeCCCCCHHHHHHHHHHhc
Q 037483 130 VDELCEPNGLNYDEALQLLNTKA 152 (693)
Q Consensus 130 ~~~~~~l~~L~~~ea~~l~~~~~ 152 (693)
....+.++..+.++..+++....
T Consensus 340 Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 340 RFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp GEEEEECCCCCHHHHHHHHHHHH
T ss_pred CceEEEcCCCCHHHHHHHHHHHH
Confidence 12368899999999988887654
No 210
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.91 E-value=3.7e-05 Score=74.93 Aligned_cols=165 Identities=16% Similarity=0.142 Sum_probs=91.8
Q ss_pred ccCCCCccccchhHHHHHHHHhcCC---------CCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEcc-c---
Q 037483 13 SETLKKLVRIDSCLEELRSLMDEGL---------NDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDE-V--- 79 (693)
Q Consensus 13 ~~~~~~~vGr~~~~~~l~~~l~~~~---------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~-~--- 79 (693)
+..-.+++|.++.++++.+.+..-. ....+-+.|+|++|+||||+|+++++.....| +.+... .
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~i~~~~~~~~ 84 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTISGSDFVEM 84 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEECSCSSTTS
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE---EEEeHHHHHHH
Confidence 3445689999998888877653210 01234589999999999999999998764332 222211 0
Q ss_pred --C-------------CCCCeEEEEEecCCChh----------------hhhHHhcCCCc--CCCCceEEEEeCChHHH-
Q 037483 80 --G-------------CNTKKVLLVIDDVVDIK----------------QLEYLVGKREW--FGSGSRIIITSRDEHLL- 125 (693)
Q Consensus 80 --~-------------~~~~~~LlvlDdv~~~~----------------~~~~l~~~~~~--~~~~~~iliTtR~~~~~- 125 (693)
+ ....+.++++|+++... .+..+...+.. ...+..||.||......
T Consensus 85 ~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~ 164 (257)
T 1lv7_A 85 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 164 (257)
T ss_dssp CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSC
T ss_pred hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCC
Confidence 0 12346799999983221 11222211111 12345677777654311
Q ss_pred HHc----CCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCC-CchhHHHH
Q 037483 126 KTH----GVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGG-LPLALKVL 183 (693)
Q Consensus 126 ~~~----~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~ 183 (693)
... .....+.++..+.++-.+++..+.-......+. ....++..+.| .+--+..+
T Consensus 165 ~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~---~~~~la~~~~G~~~~dl~~l 224 (257)
T 1lv7_A 165 PALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI---DAAIIARGTPGFSGADLANL 224 (257)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCCHHHHHHH
T ss_pred HHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccc---cHHHHHHHcCCCCHHHHHHH
Confidence 111 224567788888888888887765221111111 12345666677 66555443
No 211
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.90 E-value=4e-05 Score=79.43 Aligned_cols=156 Identities=21% Similarity=0.242 Sum_probs=96.5
Q ss_pred CCCCccccchhHHHHHHHHhcC----------CCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEc-cc----
Q 037483 15 TLKKLVRIDSCLEELRSLMDEG----------LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVD-EV---- 79 (693)
Q Consensus 15 ~~~~~vGr~~~~~~l~~~l~~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~-~~---- 79 (693)
.-.++.|.++.+++|.+.+... .-..++-|.++|+||.|||.||++++......|- .+.. ..
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~---~v~~s~l~sk~ 255 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFI---FSPASGIVDKY 255 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEE---EEEGGGTCCSS
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EEehhhhcccc
Confidence 3467889999999998876431 1124678999999999999999999997755432 1221 11
Q ss_pred --------------CCCCCeEEEEEecCCChh------------h----hhHHhcCCCcC--CCCceEEEEeCChHHHHH
Q 037483 80 --------------GCNTKKVLLVIDDVVDIK------------Q----LEYLVGKREWF--GSGSRIIITSRDEHLLKT 127 (693)
Q Consensus 80 --------------~~~~~~~LlvlDdv~~~~------------~----~~~l~~~~~~~--~~~~~iliTtR~~~~~~~ 127 (693)
.....+++|++|+++... . +..++..+... ..+..||.||........
T Consensus 256 ~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDp 335 (437)
T 4b4t_L 256 IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDP 335 (437)
T ss_dssp SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCT
T ss_pred chHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCH
Confidence 134578999999996431 0 12232222211 245567777766442211
Q ss_pred -----cCCCceeeCCCCCHHHHHHHHHHhcccCCC-CchHHHHHHHHHHHHhCCCc
Q 037483 128 -----HGVDELCEPNGLNYDEALQLLNTKAFKTHK-PLEECAKLSERVPQYAGGLP 177 (693)
Q Consensus 128 -----~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~P 177 (693)
...+..+.++..+.++-.++|..+.-.-.. ...+ ...+++.+.|.-
T Consensus 336 AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 336 ALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp TTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred HHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCC
Confidence 123567889888999988999877633221 1112 245667777754
No 212
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.90 E-value=1.5e-05 Score=84.75 Aligned_cols=161 Identities=16% Similarity=0.138 Sum_probs=95.8
Q ss_pred CCccccchhHHHHHHHHhcC-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEc-c-----c
Q 037483 17 KKLVRIDSCLEELRSLMDEG-----------LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVD-E-----V 79 (693)
Q Consensus 17 ~~~vGr~~~~~~l~~~l~~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~-~-----~ 79 (693)
.+++|.+..+++|.+++... .. ..+-|.|+|++|+|||++|+++++.....| +.+.. . .
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~-~~~~vLL~GppGtGKT~lAraia~~~~~~f---v~vn~~~l~~~~~ 279 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVK-PPRGILLYGPPGTGKTLIARAVANETGAFF---FLINGPEIMSKLA 279 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCC-CCCEEEEECSTTSSHHHHHHHHHHHCSSEE---EEEEHHHHHTSCT
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCC-CCCcEEEECcCCCCHHHHHHHHHHHhCCCE---EEEEchHhhhhhc
Confidence 46899999999999887642 22 356799999999999999999988653222 12221 0 0
Q ss_pred -------------CCCCCeEEEEEecCCChh-------------hhhHHhcCCCc--CCCCceEEEEeCChHH-----HH
Q 037483 80 -------------GCNTKKVLLVIDDVVDIK-------------QLEYLVGKREW--FGSGSRIIITSRDEHL-----LK 126 (693)
Q Consensus 80 -------------~~~~~~~LlvlDdv~~~~-------------~~~~l~~~~~~--~~~~~~iliTtR~~~~-----~~ 126 (693)
...+++.+|+||+++... ....+...+.. ...+.+||.||..... ..
T Consensus 280 g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r 359 (489)
T 3hu3_A 280 GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRR 359 (489)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGS
T ss_pred chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhC
Confidence 123456899999993210 11222222221 1234566667765422 11
Q ss_pred HcCCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCC-chhHHHHh
Q 037483 127 THGVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGL-PLALKVLG 184 (693)
Q Consensus 127 ~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~ 184 (693)
.......+.++..+.++-.+++..++-......+. ...++++.+.|. +-.+..+.
T Consensus 360 ~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~---~l~~la~~t~g~s~~dL~~L~ 415 (489)
T 3hu3_A 360 FGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV---DLEQVANETHGHVGADLAALC 415 (489)
T ss_dssp TTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTC---CHHHHHHTCTTCCHHHHHHHH
T ss_pred CCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchh---hHHHHHHHccCCcHHHHHHHH
Confidence 11334578899999999999998876322211110 124466666664 44454443
No 213
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.87 E-value=3.3e-05 Score=79.90 Aligned_cols=155 Identities=23% Similarity=0.242 Sum_probs=89.7
Q ss_pred CCCccccchhHHHHHHHHhcC----------CCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEc-cc-----
Q 037483 16 LKKLVRIDSCLEELRSLMDEG----------LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVD-EV----- 79 (693)
Q Consensus 16 ~~~~vGr~~~~~~l~~~l~~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~-~~----- 79 (693)
-.++.|.++..++|.+.+... .-..++-|.++|++|.|||.+|+++++.....|- .+.. +.
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~---~v~~~~l~~~~~ 247 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFI---RVNGSEFVHKYL 247 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEE---EEEGGGTCCSSC
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeE---EEecchhhcccc
Confidence 467899999999998866431 1124677999999999999999999997754432 1111 10
Q ss_pred C-------------CCCCeEEEEEecCCChh----------------hhhHHhcCCCc--CCCCceEEEEeCChH-----
Q 037483 80 G-------------CNTKKVLLVIDDVVDIK----------------QLEYLVGKREW--FGSGSRIIITSRDEH----- 123 (693)
Q Consensus 80 ~-------------~~~~~~LlvlDdv~~~~----------------~~~~l~~~~~~--~~~~~~iliTtR~~~----- 123 (693)
| ....++++++|+++... .+..++..+.. ...+..||.||....
T Consensus 248 Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~A 327 (428)
T 4b4t_K 248 GEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPA 327 (428)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHH
T ss_pred chhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChh
Confidence 1 24568999999984221 01222222221 134556677776542
Q ss_pred HHHHcCCCceeeCCCC-CHHHHHHHHHHhcccCCC-CchHHHHHHHHHHHHhCCCc
Q 037483 124 LLKTHGVDELCEPNGL-NYDEALQLLNTKAFKTHK-PLEECAKLSERVPQYAGGLP 177 (693)
Q Consensus 124 ~~~~~~~~~~~~l~~L-~~~ea~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~P 177 (693)
+......+..++++++ +.++-.++|..++-.... +..+ ...+++.+.|.-
T Consensus 328 llRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~s 379 (428)
T 4b4t_K 328 LLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSLS 379 (428)
T ss_dssp HHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTCC
T ss_pred hhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCCC
Confidence 2221223556788765 555556667665522211 1112 345666777653
No 214
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.85 E-value=0.00046 Score=71.83 Aligned_cols=78 Identities=9% Similarity=0.169 Sum_probs=45.1
Q ss_pred ccCCCCCCcEEEcCCCC--Cccc-chhhhcCccccceeccCCcCceeecC-CcCCCCCCCEEecCCCCCCccCCCCCCCC
Q 037483 333 SLSSLKCLRTLELSGCS--KLKR-FLEIVASMEDLSELYLDGTFITKLPL-SIELLTGLELLNLNDCKNLLRLPSSIDGC 408 (693)
Q Consensus 333 ~l~~l~~L~~L~l~~~~--~~~~-~~~~~~~l~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~~ 408 (693)
.|.++++|+.+.+..+. .... -...|.++.+|+.+.+..+ ++.++. .+..+.+|+.+.+..+ ....-...+.+|
T Consensus 82 AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c 159 (394)
T 4gt6_A 82 AFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYC 159 (394)
T ss_dssp TTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred HhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeecccceecc
Confidence 56778888888886542 1222 2345777777877776543 444443 3566777777777542 222222344555
Q ss_pred cccc
Q 037483 409 FKLE 412 (693)
Q Consensus 409 ~~L~ 412 (693)
.+|+
T Consensus 160 ~~L~ 163 (394)
T 4gt6_A 160 YSLH 163 (394)
T ss_dssp TTCC
T ss_pred cccc
Confidence 5554
No 215
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.85 E-value=7.4e-06 Score=80.53 Aligned_cols=139 Identities=18% Similarity=0.212 Sum_probs=81.2
Q ss_pred cCCCCccccchhHHHHHHHHhcC---------CCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEE---cccC-
Q 037483 14 ETLKKLVRIDSCLEELRSLMDEG---------LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLV---DEVG- 80 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~~---------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~---~~~~- 80 (693)
..-.+++|.++.++++.+.+..- .....+-+.|+|++|+|||++|+++++.....|-..-.-. ...+
T Consensus 8 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~ 87 (268)
T 2r62_A 8 VRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGL 87 (268)
T ss_dssp CCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSS
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcch
Confidence 34578999999999998876520 0011234889999999999999999987654331110000 0000
Q ss_pred ------------CCCCeEEEEEecCCChh-----------------hhhHHhcCCCcCC---CCceEEEEeCChHHH---
Q 037483 81 ------------CNTKKVLLVIDDVVDIK-----------------QLEYLVGKREWFG---SGSRIIITSRDEHLL--- 125 (693)
Q Consensus 81 ------------~~~~~~LlvlDdv~~~~-----------------~~~~l~~~~~~~~---~~~~iliTtR~~~~~--- 125 (693)
...++.++++|+++... .+..+...+.... ....||.||......
T Consensus 88 ~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~ 167 (268)
T 2r62_A 88 GASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPA 167 (268)
T ss_dssp CSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGG
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHh
Confidence 11245799999995431 1222333322211 224566677654321
Q ss_pred --HHcCCCceeeCCCCCHHHHHHHHHHhc
Q 037483 126 --KTHGVDELCEPNGLNYDEALQLLNTKA 152 (693)
Q Consensus 126 --~~~~~~~~~~l~~L~~~ea~~l~~~~~ 152 (693)
........+.++..+.++..+++...+
T Consensus 168 l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 168 LMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp GGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred HcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 111223567888888888888887665
No 216
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.83 E-value=7e-06 Score=75.24 Aligned_cols=105 Identities=19% Similarity=0.211 Sum_probs=60.0
Q ss_pred CCccc----cchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHh-cccceeEEEEccc-----------C
Q 037483 17 KKLVR----IDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLIS-HEFEGSSFLVDEV-----------G 80 (693)
Q Consensus 17 ~~~vG----r~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~~~~~-----------~ 80 (693)
+.|++ ++..++.+.+++..-.....+.++|+|++|+||||||+.++..+. ..-....++.... +
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 89 (180)
T 3ec2_A 10 DTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEG 89 (180)
T ss_dssp SSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHT
T ss_pred ccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCc
Confidence 34554 344455555555443222357899999999999999999998775 2211233443310 1
Q ss_pred C-------CCCeEEEEEecCCC--hhhh--hHHhcCCCc-CCCCceEEEEeCC
Q 037483 81 C-------NTKKVLLVIDDVVD--IKQL--EYLVGKREW-FGSGSRIIITSRD 121 (693)
Q Consensus 81 ~-------~~~~~LlvlDdv~~--~~~~--~~l~~~~~~-~~~~~~iliTtR~ 121 (693)
. -.+.-++||||++. .+.+ +.+...+.. ...+..+|+||..
T Consensus 90 ~~~~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 90 KDTKFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp CCSHHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred hHHHHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 1 11456899999973 2222 122221111 1357788888875
No 217
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.83 E-value=0.00012 Score=74.19 Aligned_cols=132 Identities=15% Similarity=0.103 Sum_probs=80.8
Q ss_pred CCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEE--------------EcccC
Q 037483 15 TLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFL--------------VDEVG 80 (693)
Q Consensus 15 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~--------------~~~~~ 80 (693)
....++|+++.++.+...+..+. -+.++|++|+|||++|+++++.....|....+. ....+
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~~~-----~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~~ 99 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICTGG-----HILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHKG 99 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHHTC-----CEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTTT
T ss_pred hccceeCcHHHHHHHHHHHHcCC-----eEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCCCC
Confidence 34689999999999988887532 489999999999999999998764433221110 00000
Q ss_pred ---CCC---CeEEEEEecCCChhh--hhHHhcCCC-----------cCCCCceEEEEeCCh----------HHHHHcCCC
Q 037483 81 ---CNT---KKVLLVIDDVVDIKQ--LEYLVGKRE-----------WFGSGSRIIITSRDE----------HLLKTHGVD 131 (693)
Q Consensus 81 ---~~~---~~~LlvlDdv~~~~~--~~~l~~~~~-----------~~~~~~~iliTtR~~----------~~~~~~~~~ 131 (693)
... ...++++|+++.... ...+...+. .......|+.|+... .+... ..
T Consensus 100 ~~~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~R--f~ 177 (331)
T 2r44_A 100 NFEVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDR--FM 177 (331)
T ss_dssp EEEEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTT--SS
T ss_pred ceEeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhh--ee
Confidence 000 125899999965422 222221111 112345566666632 22222 12
Q ss_pred ceeeCCCCCHHHHHHHHHHhcc
Q 037483 132 ELCEPNGLNYDEALQLLNTKAF 153 (693)
Q Consensus 132 ~~~~l~~L~~~ea~~l~~~~~~ 153 (693)
..+.++..+.++-.+++...+.
T Consensus 178 ~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 178 MKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp EEEECCCCCHHHHHHHHHHHHC
T ss_pred EEEEcCCCCHHHHHHHHHhccc
Confidence 3578999999999999988763
No 218
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.81 E-value=4.3e-05 Score=75.98 Aligned_cols=128 Identities=13% Similarity=0.037 Sum_probs=85.8
Q ss_pred ccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHh---cccceeEEEEcc---c---------------
Q 037483 21 RIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLIS---HEFEGSSFLVDE---V--------------- 79 (693)
Q Consensus 21 Gr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~---~~f~~~~~~~~~---~--------------- 79 (693)
|-++.++.|...+..+ +.+...++|++|+|||++|+.+++... ...+....+... .
T Consensus 1 g~~~~~~~L~~~i~~~---~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~ 77 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS---EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYS 77 (305)
T ss_dssp ---CHHHHHHHHHHTC---SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSC
T ss_pred ChHHHHHHHHHHHHCC---CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhc
Confidence 4566777888887753 367899999999999999999987531 123334444422 1
Q ss_pred CCCCCeEEEEEecCCChh--hhhHHhcCCCcCCCCceEEEEeCCh-HHHHHcCCCceeeCCCCCHHHHHHHHHHhc
Q 037483 80 GCNTKKVLLVIDDVVDIK--QLEYLVGKREWFGSGSRIIITSRDE-HLLKTHGVDELCEPNGLNYDEALQLLNTKA 152 (693)
Q Consensus 80 ~~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTtR~~-~~~~~~~~~~~~~l~~L~~~ea~~l~~~~~ 152 (693)
...+++-++|+|+++... ..+.+...+....+.+.+|++|.+. .+....... .+++.++++++..+++...+
T Consensus 78 p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 78 PELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp CSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred cccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 134567889999997643 3555655555445677777766543 333333334 89999999999999998776
No 219
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.80 E-value=2.1e-05 Score=69.25 Aligned_cols=81 Identities=17% Similarity=0.196 Sum_probs=48.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc----CCCCCeEEEEEecCCChhh--hhHHhcCCCc-CCCCc
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV----GCNTKKVLLVIDDVVDIKQ--LEYLVGKREW-FGSGS 113 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~----~~~~~~~LlvlDdv~~~~~--~~~l~~~~~~-~~~~~ 113 (693)
...++|+|+.|+|||||++.++......-...+++.... ....+.-++|+||+..... .+.+...+.. ...|.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~ 115 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLTDAAFEAEYLAVDQVEKLGNEEQALLFSIFNRFRNSGK 115 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCCGGGGGCSEEEEESTTCCCSHHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHHHHHhCCCEEEEeCccccChHHHHHHHHHHHHHHHcCC
Confidence 357999999999999999999987754311245554421 1123456889999965322 2222221111 12334
Q ss_pred -eEEEEeCC
Q 037483 114 -RIIITSRD 121 (693)
Q Consensus 114 -~iliTtR~ 121 (693)
+||+||+.
T Consensus 116 ~~iiits~~ 124 (149)
T 2kjq_A 116 GFLLLGSEY 124 (149)
T ss_dssp CEEEEEESS
T ss_pred cEEEEECCC
Confidence 48888874
No 220
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.77 E-value=8.5e-05 Score=76.89 Aligned_cols=159 Identities=18% Similarity=0.178 Sum_probs=95.7
Q ss_pred CccCCCCccccchhHHHHHHHHhcC----------CCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEc-cc-
Q 037483 12 KSETLKKLVRIDSCLEELRSLMDEG----------LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVD-EV- 79 (693)
Q Consensus 12 ~~~~~~~~vGr~~~~~~l~~~l~~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~-~~- 79 (693)
|...-.++.|.++..++|.+.+... .-..++-|.++|+||.|||.+|++++......|- .+.. ..
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~---~v~~s~l~ 252 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFL---KLAAPQLV 252 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEE---EEEGGGGC
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEE---EEehhhhh
Confidence 3334478999999999998764320 1124678999999999999999999997655432 1111 11
Q ss_pred ----C-------------CCCCeEEEEEecCCChh------------h----hhHHhcCCCcC--CCCceEEEEeCChHH
Q 037483 80 ----G-------------CNTKKVLLVIDDVVDIK------------Q----LEYLVGKREWF--GSGSRIIITSRDEHL 124 (693)
Q Consensus 80 ----~-------------~~~~~~LlvlDdv~~~~------------~----~~~l~~~~~~~--~~~~~iliTtR~~~~ 124 (693)
| ....++++++|+++... . ...++..+... ..+..||.||.....
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~ 332 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDV 332 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCC
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchh
Confidence 1 23468999999985321 0 11233322222 234456667765432
Q ss_pred HH-----HcCCCceeeCCCCCHHHHHHHHHHhcccCCC-CchHHHHHHHHHHHHhCCCc
Q 037483 125 LK-----THGVDELCEPNGLNYDEALQLLNTKAFKTHK-PLEECAKLSERVPQYAGGLP 177 (693)
Q Consensus 125 ~~-----~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~P 177 (693)
.. ....+..++++..+.++-.++|..++-.-.. ..-+ ...|++.+.|.-
T Consensus 333 LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 333 LDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEFN 387 (434)
T ss_dssp CCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSCC
T ss_pred cCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 21 1123567889988999988998776532211 1112 345667777653
No 221
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.75 E-value=0.00017 Score=72.47 Aligned_cols=52 Identities=19% Similarity=0.293 Sum_probs=41.4
Q ss_pred CCCccccchhHHHHHHHHhcCC------CCCeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 16 LKKLVRIDSCLEELRSLMDEGL------NDDVRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 16 ~~~~vGr~~~~~~l~~~l~~~~------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
...++|.+..++.+...+.... ......+.|+|++|+|||++|+.+++....
T Consensus 16 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 16 HKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred hhhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 3578999999999988886531 112468999999999999999999987643
No 222
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.71 E-value=4.7e-06 Score=73.06 Aligned_cols=100 Identities=9% Similarity=-0.028 Sum_probs=57.4
Q ss_pred CCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc-------C--CCCCeEE
Q 037483 17 KKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV-------G--CNTKKVL 87 (693)
Q Consensus 17 ~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~-------~--~~~~~~L 87 (693)
-+++|++..++++.+.+..... ...-|.|+|.+|+|||++|+++++... ..+.+.... + ...+.-.
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~-~~~~vll~G~~GtGKt~lA~~i~~~~~----~~~~~~~~~~~~~~~~~~~~~a~~~~ 78 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAK-RTSPVFLTGEAGSPFETVARYFHKNGT----PWVSPARVEYLIDMPMELLQKAEGGV 78 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHT-CSSCEEEEEETTCCHHHHHGGGCCTTS----CEECCSSTTHHHHCHHHHHHHTTTSE
T ss_pred cCceeCCHHHHHHHHHHHHHhC-CCCcEEEECCCCccHHHHHHHHHHhCC----CeEEechhhCChHhhhhHHHhCCCCe
Confidence 3689999999999988765222 223488999999999999999876433 111111100 0 0112347
Q ss_pred EEEecCCChh--hhhHHhcCCCcC-CCCceEEEEeCC
Q 037483 88 LVIDDVVDIK--QLEYLVGKREWF-GSGSRIIITSRD 121 (693)
Q Consensus 88 lvlDdv~~~~--~~~~l~~~~~~~-~~~~~iliTtR~ 121 (693)
+++|+++... ....+...+... ..+.++|.||..
T Consensus 79 l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 79 LYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred EEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 8899997653 223333222211 345678877753
No 223
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.70 E-value=7.7e-05 Score=74.38 Aligned_cols=48 Identities=17% Similarity=0.178 Sum_probs=39.0
Q ss_pred CCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 17 KKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 17 ~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
..++|++..+.++.+.+..... ....|.|+|.+|+|||++|+++++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~-~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP-SDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS-TTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhC-CCCcEEEECCCCchHHHHHHHHHHhC
Confidence 4689999999999988876433 23458899999999999999998854
No 224
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.70 E-value=0.00017 Score=81.81 Aligned_cols=131 Identities=15% Similarity=0.158 Sum_probs=79.6
Q ss_pred CCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccc------ceeEEEEc-------cc--
Q 037483 15 TLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEF------EGSSFLVD-------EV-- 79 (693)
Q Consensus 15 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~-------~~-- 79 (693)
..+++|||+++++++.+.+.... ..-+.++|++|+|||++|+.+++.+.... ...++..+ +.
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~~---~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~~~~G~~e~ 254 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRRT---KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFED 254 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSS---SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CT
T ss_pred CCCCccCchHHHHHHHHHHhCCC---CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccccccchHHH
Confidence 34679999999999999997633 23478999999999999999999863321 11111100 00
Q ss_pred --------CCCCCeEEEEEecCCChhhhhHHhcCCCcCCCCceEEEEeCChHHHHH-------cCCCceeeCCCCCHHHH
Q 037483 80 --------GCNTKKVLLVIDDVVDIKQLEYLVGKREWFGSGSRIIITSRDEHLLKT-------HGVDELCEPNGLNYDEA 144 (693)
Q Consensus 80 --------~~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~iliTtR~~~~~~~-------~~~~~~~~l~~L~~~ea 144 (693)
....++.++++| ...+....+...+. ....++|.||........ ......+.++..+.++.
T Consensus 255 ~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~ 330 (758)
T 3pxi_A 255 RLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDES 330 (758)
T ss_dssp THHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHH
T ss_pred HHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHH
Confidence 022457889999 22222333444333 234566666655431110 01125689999999999
Q ss_pred HHHHHHhc
Q 037483 145 LQLLNTKA 152 (693)
Q Consensus 145 ~~l~~~~~ 152 (693)
.+++....
T Consensus 331 ~~il~~~~ 338 (758)
T 3pxi_A 331 IQILQGLR 338 (758)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHH
Confidence 99998654
No 225
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.69 E-value=5.1e-06 Score=74.41 Aligned_cols=34 Identities=12% Similarity=0.307 Sum_probs=17.2
Q ss_pred CccEEecCCCccccC-CCccccCCCCCEEEccCCC
Q 037483 423 ILEELDISGTTIREP-PSSIFAIKNLKKLSFSGCS 456 (693)
Q Consensus 423 ~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~~~ 456 (693)
+|++||+++|.++.. ...+..+++|++|+|++|.
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence 456666666655422 2233445555555555553
No 226
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.68 E-value=8e-05 Score=76.10 Aligned_cols=157 Identities=17% Similarity=0.217 Sum_probs=94.8
Q ss_pred cCCCCccccchhHHHHHHHHhcC----------CCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEc-cc---
Q 037483 14 ETLKKLVRIDSCLEELRSLMDEG----------LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVD-EV--- 79 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~-~~--- 79 (693)
..-.++.|.++..++|.+.+... .-..++-|.++|++|.|||.||++++......|-. +.. +.
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~---v~~s~l~sk 255 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLR---IVGSELIQK 255 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEE---EESGGGCCS
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEE---EEHHHhhhc
Confidence 33467889999999998866431 11236789999999999999999999977554321 111 11
Q ss_pred ---------------CCCCCeEEEEEecCCChh----------------hhhHHhcCCCcC--CCCceEEEEeCChHHHH
Q 037483 80 ---------------GCNTKKVLLVIDDVVDIK----------------QLEYLVGKREWF--GSGSRIIITSRDEHLLK 126 (693)
Q Consensus 80 ---------------~~~~~~~LlvlDdv~~~~----------------~~~~l~~~~~~~--~~~~~iliTtR~~~~~~ 126 (693)
.....++++++|+++... .+..++..+... ..+..||.||-......
T Consensus 256 ~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LD 335 (437)
T 4b4t_I 256 YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLD 335 (437)
T ss_dssp SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCC
T ss_pred cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcC
Confidence 134568999999985321 011222222211 23455666776544322
Q ss_pred H-----cCCCceeeCCCCCHHHHHHHHHHhcccCCCC-chHHHHHHHHHHHHhCCCc
Q 037483 127 T-----HGVDELCEPNGLNYDEALQLLNTKAFKTHKP-LEECAKLSERVPQYAGGLP 177 (693)
Q Consensus 127 ~-----~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~-~~~~~~~~~~i~~~~~g~P 177 (693)
. -..+..+.++..+.++-.++|..++-..... ..+ ...+++.+.|.-
T Consensus 336 pALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 336 PALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDLS 388 (437)
T ss_dssp TTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSCC
T ss_pred HHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 1 1234568888889999899998776322211 112 345666676653
No 227
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.68 E-value=0.00014 Score=72.10 Aligned_cols=109 Identities=16% Similarity=0.163 Sum_probs=63.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEc-c-----c-------------C----CCCCeEEEEEecCCCh
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVD-E-----V-------------G----CNTKKVLLVIDDVVDI 96 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~-~-----~-------------~----~~~~~~LlvlDdv~~~ 96 (693)
.++.+.++|++|+|||+||+++++.....|- .+.. . . . ...++.+++||+++..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~~i---~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGINPI---MMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTCCCE---EEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCEE---EEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 4678999999999999999999998744331 1111 0 0 0 2557899999999532
Q ss_pred hh--------------h-hHHhcCCC-------------cCCCCceEEEEeCChH-----HHHHcCCCceeeCCCCCHHH
Q 037483 97 KQ--------------L-EYLVGKRE-------------WFGSGSRIIITSRDEH-----LLKTHGVDELCEPNGLNYDE 143 (693)
Q Consensus 97 ~~--------------~-~~l~~~~~-------------~~~~~~~iliTtR~~~-----~~~~~~~~~~~~l~~L~~~e 143 (693)
.. + ..+...+. ....+..||.||.... +......+..+.++ +.++
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~P--~~~~ 189 (293)
T 3t15_A 112 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP--TRED 189 (293)
T ss_dssp ------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEECC--CHHH
T ss_pred cCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeCc--CHHH
Confidence 11 1 22221110 1124567888887542 22111223344543 8888
Q ss_pred HHHHHHHhcc
Q 037483 144 ALQLLNTKAF 153 (693)
Q Consensus 144 a~~l~~~~~~ 153 (693)
-.+++.....
T Consensus 190 r~~Il~~~~~ 199 (293)
T 3t15_A 190 RIGVCTGIFR 199 (293)
T ss_dssp HHHHHHHHHG
T ss_pred HHHHHHHhcc
Confidence 8888887664
No 228
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.66 E-value=0.00016 Score=76.11 Aligned_cols=157 Identities=17% Similarity=0.197 Sum_probs=93.6
Q ss_pred CCCCccccchhHHHHHHHHhcCC---------CCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEc-cc-----
Q 037483 15 TLKKLVRIDSCLEELRSLMDEGL---------NDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVD-EV----- 79 (693)
Q Consensus 15 ~~~~~vGr~~~~~~l~~~l~~~~---------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~-~~----- 79 (693)
.-.+++|.++.++++.+.+..-. ..-.+-|.|+|++|+|||+||++++.+....|- .+.. +.
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~---~is~~~~~~~~~ 90 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFF---HISGSDFVELFV 90 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEE---EEEGGGTTTCCT
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCee---eCCHHHHHHHHh
Confidence 34679999999888887654310 012345889999999999999999987643321 2221 11
Q ss_pred -------------CCCCCeEEEEEecCCChh----------------hhhHHhcCCCcC--CCCceEEEEeCChHHHHH-
Q 037483 80 -------------GCNTKKVLLVIDDVVDIK----------------QLEYLVGKREWF--GSGSRIIITSRDEHLLKT- 127 (693)
Q Consensus 80 -------------~~~~~~~LlvlDdv~~~~----------------~~~~l~~~~~~~--~~~~~iliTtR~~~~~~~- 127 (693)
.....+.+|+||+++... .+..+...+..+ ..+..||.||........
T Consensus 91 g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~a 170 (476)
T 2ce7_A 91 GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPA 170 (476)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGG
T ss_pred cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchh
Confidence 023467899999995421 122232222111 245667777776543221
Q ss_pred -c---CCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCc
Q 037483 128 -H---GVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLP 177 (693)
Q Consensus 128 -~---~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 177 (693)
. ..+..+.++..+.++-.+++..++-......+. + ...+++.+.|+.
T Consensus 171 llR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v--~-l~~la~~t~G~s 221 (476)
T 2ce7_A 171 LLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV--N-LEIIAKRTPGFV 221 (476)
T ss_dssp GGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--C-HHHHHHTCTTCC
T ss_pred hcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh--h-HHHHHHhcCCCc
Confidence 1 234578888889888888887766322111111 0 344777788877
No 229
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.66 E-value=0.0021 Score=66.45 Aligned_cols=62 Identities=13% Similarity=0.106 Sum_probs=40.8
Q ss_pred ccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccC-ccccCCCCCCEEecccc
Q 037483 486 SLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLP-ASISGLLNLKELELEDC 549 (693)
Q Consensus 486 ~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~n 549 (693)
.+.++.+|+.+.+..+ +.. .-...|..+++|+.+.+.++.++.++ ..+.+|.+|+.+.|..+
T Consensus 258 aF~~~~~l~~i~l~~~-i~~-i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 258 LLQNCTALKTLNFYAK-VKT-VPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp TTTTCTTCCEEEECCC-CSE-ECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred ccceeehhcccccccc-cee-ccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence 4566677777777544 211 11235677788888888777777775 45677788888877654
No 230
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.63 E-value=0.00016 Score=82.21 Aligned_cols=136 Identities=15% Similarity=0.163 Sum_probs=81.9
Q ss_pred CCccccchhHHHHHHHHhcCC------CCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEc-ccC---------
Q 037483 17 KKLVRIDSCLEELRSLMDEGL------NDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVD-EVG--------- 80 (693)
Q Consensus 17 ~~~vGr~~~~~~l~~~l~~~~------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~-~~~--------- 80 (693)
..++|.+..++.+...+.... ......+.++|++|+|||++|+++++.....-...+.+.. +..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~~ 570 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQ 570 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC---
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccch
Confidence 578999999998888876522 1123479999999999999999999976332222223322 110
Q ss_pred -----CCCCeEEEEEecCCChhh--hhHHhcCCCc-----------CCCCceEEEEeCC-----hHH----HHHc-----
Q 037483 81 -----CNTKKVLLVIDDVVDIKQ--LEYLVGKREW-----------FGSGSRIIITSRD-----EHL----LKTH----- 128 (693)
Q Consensus 81 -----~~~~~~LlvlDdv~~~~~--~~~l~~~~~~-----------~~~~~~iliTtR~-----~~~----~~~~----- 128 (693)
.....-+++||+++.... ...+...+.. .....+||.||.. ..+ ...+
T Consensus 571 l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~ 650 (758)
T 3pxi_A 571 LTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFI 650 (758)
T ss_dssp CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHH
T ss_pred hhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHH
Confidence 012335899999975432 2223222111 1245688888873 111 1111
Q ss_pred -CCCceeeCCCCCHHHHHHHHHHhc
Q 037483 129 -GVDELCEPNGLNYDEALQLLNTKA 152 (693)
Q Consensus 129 -~~~~~~~l~~L~~~ea~~l~~~~~ 152 (693)
..+.++.++++++++..+++...+
T Consensus 651 ~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 651 NRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp TTSSEEEECC--CHHHHHHHHHHHH
T ss_pred hhCCeEEecCCCCHHHHHHHHHHHH
Confidence 223588999999999888886654
No 231
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.54 E-value=9.2e-06 Score=72.76 Aligned_cols=83 Identities=19% Similarity=0.253 Sum_probs=50.6
Q ss_pred CCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCcCCeeeCCCCC-CCCCCCCccCCCC----CCCC
Q 037483 445 KNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCSLSKLDLSYCG-LGEGAIPNDIGNL----CSLK 519 (693)
Q Consensus 445 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~-l~~~~~p~~l~~l----~~L~ 519 (693)
.+|+.|++++|.++...- ..+.++++|++|+|++|. +++..+ ..+..+ ++|+
T Consensus 61 ~~L~~LDLs~~~Itd~GL----------------------~~L~~~~~L~~L~L~~C~~ItD~gL-~~L~~~~~~~~~L~ 117 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGF----------------------DHMEGLQYVEKIRLCKCHYIEDGCL-ERLSQLENLQKSML 117 (176)
T ss_dssp CCEEEEEEESCCCCGGGG----------------------GGGTTCSCCCEEEEESCTTCCHHHH-HHHHTCHHHHHHCC
T ss_pred ceEeEEeCcCCCccHHHH----------------------HHhcCCCCCCEEEeCCCCccCHHHH-HHHHhcccccCCCC
Confidence 467778888776433210 145677778888888774 543222 223332 4678
Q ss_pred EEeCCCC-CCc--ccCccccCCCCCCEEecccccc
Q 037483 520 ELYLSKN-NFV--TLPASISGLLNLKELELEDCAL 551 (693)
Q Consensus 520 ~L~L~~n-~l~--~lp~~l~~l~~L~~L~L~~n~~ 551 (693)
+|+|++| ++| .+. .+.++++|++|+|++|+.
T Consensus 118 ~L~Ls~C~~ITD~Gl~-~L~~~~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 118 EMEIISCGNVTDKGII-ALHHFRNLKYLFLSDLPG 151 (176)
T ss_dssp EEEEESCTTCCHHHHH-HGGGCTTCCEEEEESCTT
T ss_pred EEEcCCCCcCCHHHHH-HHhcCCCCCEEECCCCCC
Confidence 8888777 366 232 456678888888887763
No 232
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.46 E-value=0.0007 Score=65.60 Aligned_cols=137 Identities=18% Similarity=0.203 Sum_probs=79.6
Q ss_pred ccCCCCccccchhHHHHHHHHhcCC---------CCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEcc-----
Q 037483 13 SETLKKLVRIDSCLEELRSLMDEGL---------NDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDE----- 78 (693)
Q Consensus 13 ~~~~~~~vGr~~~~~~l~~~l~~~~---------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~----- 78 (693)
...-++++|.++...++.++...-. -.-.+-+.|+|++|+||||||+.++...... .+.+...
T Consensus 12 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~---~i~~~~~~~~~~ 88 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITASGSDFVEM 88 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCC---EEEEEHHHHHHS
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC---EEEeeHHHHHHH
Confidence 3344689999988777766543210 0011238999999999999999999876422 2222210
Q ss_pred -c-------------CCCCCeEEEEEecCCChh----------------hhhHHhcCCCcC--CCCceEEEEeCChHHHH
Q 037483 79 -V-------------GCNTKKVLLVIDDVVDIK----------------QLEYLVGKREWF--GSGSRIIITSRDEHLLK 126 (693)
Q Consensus 79 -~-------------~~~~~~~LlvlDdv~~~~----------------~~~~l~~~~~~~--~~~~~iliTtR~~~~~~ 126 (693)
. .....+.++++|+++... ....+...+... .....++.||..+....
T Consensus 89 ~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld 168 (254)
T 1ixz_A 89 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILD 168 (254)
T ss_dssp CTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSC
T ss_pred HhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCC
Confidence 0 022356899999994321 012222222111 12234555666654332
Q ss_pred H-----cCCCceeeCCCCCHHHHHHHHHHhc
Q 037483 127 T-----HGVDELCEPNGLNYDEALQLLNTKA 152 (693)
Q Consensus 127 ~-----~~~~~~~~l~~L~~~ea~~l~~~~~ 152 (693)
. ......+.++..+.++-.+++...+
T Consensus 169 ~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 169 PALLRPGRFDRQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp GGGGSTTSSCEEEECCSCCHHHHHHHHHHHH
T ss_pred HHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH
Confidence 1 1235578888889988888887665
No 233
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.41 E-value=0.00085 Score=71.11 Aligned_cols=160 Identities=16% Similarity=0.157 Sum_probs=92.2
Q ss_pred CccCCCCccccchhHHHHHHHHhcCCC---------CCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEc-cc--
Q 037483 12 KSETLKKLVRIDSCLEELRSLMDEGLN---------DDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVD-EV-- 79 (693)
Q Consensus 12 ~~~~~~~~vGr~~~~~~l~~~l~~~~~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~-~~-- 79 (693)
+...-.+++|.++.++++.++...-.. .-.+-|.|+|++|+|||+||++++...... .+.+.. ..
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~---~i~i~g~~~~~ 102 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITASGSDFVE 102 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCC---EEEEEGGGGTS
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---EEEEehhHHHH
Confidence 344457899999988888776543100 012349999999999999999999876422 222222 10
Q ss_pred --------------C--CCCCeEEEEEecCCChh----------------hhhHHhcCCCcC--CCCceEEEEeCChHHH
Q 037483 80 --------------G--CNTKKVLLVIDDVVDIK----------------QLEYLVGKREWF--GSGSRIIITSRDEHLL 125 (693)
Q Consensus 80 --------------~--~~~~~~LlvlDdv~~~~----------------~~~~l~~~~~~~--~~~~~iliTtR~~~~~ 125 (693)
. ....+.++++|+++... .+..+...+..+ .....++.||..+...
T Consensus 103 ~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~L 182 (499)
T 2dhr_A 103 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDIL 182 (499)
T ss_dssp SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGS
T ss_pred hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhc
Confidence 0 12345899999995321 122233222211 2334556666665442
Q ss_pred HH-----cCCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHhCCCc
Q 037483 126 KT-----HGVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYAGGLP 177 (693)
Q Consensus 126 ~~-----~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 177 (693)
.. ...+..+.++..+.++-.+++..++-......+. ....+++.+.|+.
T Consensus 183 D~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv---~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 183 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV---DLALLAKRTPGFV 236 (499)
T ss_dssp CTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSS---TTHHHHTTSCSCC
T ss_pred CcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHH---HHHHHHHhcCCCC
Confidence 21 1234578899899998889888765221111111 1334666777765
No 234
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.36 E-value=0.00011 Score=66.91 Aligned_cols=66 Identities=20% Similarity=0.311 Sum_probs=41.4
Q ss_pred hHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEcc--c---CCCCCeEEEEEecCCC
Q 037483 25 CLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDE--V---GCNTKKVLLVIDDVVD 95 (693)
Q Consensus 25 ~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~--~---~~~~~~~LlvlDdv~~ 95 (693)
-+..+..++...+ ....+.|+|++|+|||++|.++++.+..+. ..|.... . .+.+.+ +++|||++.
T Consensus 44 f~~~l~~~~~~iP--kkn~ili~GPPGtGKTt~a~ala~~l~g~i--~~fans~s~f~l~~l~~~k-IiiLDEad~ 114 (212)
T 1tue_A 44 FLGALKSFLKGTP--KKNCLVFCGPANTGKSYFGMSFIHFIQGAV--ISFVNSTSHFWLEPLTDTK-VAMLDDATT 114 (212)
T ss_dssp HHHHHHHHHHTCT--TCSEEEEESCGGGCHHHHHHHHHHHHTCEE--CCCCCSSSCGGGGGGTTCS-SEEEEEECH
T ss_pred HHHHHHHHHhcCC--cccEEEEECCCCCCHHHHHHHHHHHhCCCe--eeEEeccchhhhcccCCCC-EEEEECCCc
Confidence 3556666665422 234699999999999999999999875431 1111111 0 122334 889999964
No 235
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.32 E-value=0.0011 Score=64.79 Aligned_cols=134 Identities=16% Similarity=0.120 Sum_probs=78.9
Q ss_pred CCCccccchhHHHHHHHHhcC----------CCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEcc-c-----
Q 037483 16 LKKLVRIDSCLEELRSLMDEG----------LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDE-V----- 79 (693)
Q Consensus 16 ~~~~vGr~~~~~~l~~~l~~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~-~----- 79 (693)
-.++.|.++..++|.+.+... .-.-.+-++|+|++|.||||||+.++..... ..+.+... .
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~---~~i~i~g~~l~~~~~ 85 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL---NFISVKGPELLNMYV 85 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC---EEEEEETTTTCSSTT
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC---CEEEEEcHHHHhhhh
Confidence 357889998888887754210 0001122999999999999999999986543 22333321 0
Q ss_pred C-------------CCCCeEEEEEecCCChhh-------------hhHHhcCCCcC--CCCceEEEEeCChHHHHH----
Q 037483 80 G-------------CNTKKVLLVIDDVVDIKQ-------------LEYLVGKREWF--GSGSRIIITSRDEHLLKT---- 127 (693)
Q Consensus 80 ~-------------~~~~~~LlvlDdv~~~~~-------------~~~l~~~~~~~--~~~~~iliTtR~~~~~~~---- 127 (693)
+ ....+.++++|+++.... ...+...+..+ .....++.+|..+.+...
T Consensus 86 ~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r 165 (274)
T 2x8a_A 86 GESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILR 165 (274)
T ss_dssp HHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHS
T ss_pred hHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcC
Confidence 0 123568999999964210 11111111111 123455667776554322
Q ss_pred -cCCCceeeCCCCCHHHHHHHHHHhc
Q 037483 128 -HGVDELCEPNGLNYDEALQLLNTKA 152 (693)
Q Consensus 128 -~~~~~~~~l~~L~~~ea~~l~~~~~ 152 (693)
...+..+.++..+.++-.+++....
T Consensus 166 ~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 166 PGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp TTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred cccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 1346678899999999999998765
No 236
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.31 E-value=0.0021 Score=63.18 Aligned_cols=138 Identities=20% Similarity=0.225 Sum_probs=80.2
Q ss_pred CccCCCCccccchhHHHHHHHHhcCCC---------CCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEcc----
Q 037483 12 KSETLKKLVRIDSCLEELRSLMDEGLN---------DDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDE---- 78 (693)
Q Consensus 12 ~~~~~~~~vGr~~~~~~l~~~l~~~~~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~---- 78 (693)
+...-++++|.++..+++.++...-.. .-.+-+.|+|++|+||||||+.++..... ..+.+...
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~---~~i~~~~~~~~~ 111 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITASGSDFVE 111 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEEHHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC---CEEEecHHHHHH
Confidence 344456899999888877765532100 01123899999999999999999987642 22233220
Q ss_pred --cC-------------CCCCeEEEEEecCCChh----------------hhhHHhcCCCcCC--CCceEEEEeCChHHH
Q 037483 79 --VG-------------CNTKKVLLVIDDVVDIK----------------QLEYLVGKREWFG--SGSRIIITSRDEHLL 125 (693)
Q Consensus 79 --~~-------------~~~~~~LlvlDdv~~~~----------------~~~~l~~~~~~~~--~~~~iliTtR~~~~~ 125 (693)
.+ ....+.++++|+++... .+..+...+.... ....++.||..+...
T Consensus 112 ~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~l 191 (278)
T 1iy2_A 112 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDIL 191 (278)
T ss_dssp STTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSS
T ss_pred HHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhC
Confidence 00 12346899999994221 1122222222111 223445566654322
Q ss_pred -----HHcCCCceeeCCCCCHHHHHHHHHHhc
Q 037483 126 -----KTHGVDELCEPNGLNYDEALQLLNTKA 152 (693)
Q Consensus 126 -----~~~~~~~~~~l~~L~~~ea~~l~~~~~ 152 (693)
........+.++..+.++-.+++..++
T Consensus 192 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 223 (278)
T 1iy2_A 192 DPALLRPGRFDRQIAIDAPDVKGREQILRIHA 223 (278)
T ss_dssp CHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH
T ss_pred CHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHH
Confidence 111345678899889988888887665
No 237
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.29 E-value=0.00022 Score=75.61 Aligned_cols=79 Identities=18% Similarity=0.134 Sum_probs=53.6
Q ss_pred CCCccccchhHHHHHHHHhc---CCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEcccC------------
Q 037483 16 LKKLVRIDSCLEELRSLMDE---GLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEVG------------ 80 (693)
Q Consensus 16 ~~~~vGr~~~~~~l~~~l~~---~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~------------ 80 (693)
..+++|.++.++.+..++.. +.. ..+-+.++|++|+|||++|+++++.....++....-.....
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~-~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKM-AGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLME 114 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCC-TTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCC-CCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHHHHH
Confidence 47899999998876665533 221 23568999999999999999999987644332221111110
Q ss_pred --------CCCCeEEEEEecCCC
Q 037483 81 --------CNTKKVLLVIDDVVD 95 (693)
Q Consensus 81 --------~~~~~~LlvlDdv~~ 95 (693)
...++.++++|+++.
T Consensus 115 ~f~~a~~~~~~~~~il~iDEid~ 137 (456)
T 2c9o_A 115 NFRRAIGLRIKETKEVYEGEVTE 137 (456)
T ss_dssp HHHHTEEEEEEEEEEEEEEEEEE
T ss_pred HHHHHHhhhhcCCcEEEEechhh
Confidence 234678999999854
No 238
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.28 E-value=0.0004 Score=77.57 Aligned_cols=155 Identities=15% Similarity=0.139 Sum_probs=93.6
Q ss_pred CCccccchhHHHHHHHHhc---C-------CCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEc-c-----c-
Q 037483 17 KKLVRIDSCLEELRSLMDE---G-------LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVD-E-----V- 79 (693)
Q Consensus 17 ~~~vGr~~~~~~l~~~l~~---~-------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~-~-----~- 79 (693)
.++.|.++.+++|.+.+.- . .-..++-|.++|++|+|||+||++++++....| +.+.. + .
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~---~~v~~~~l~sk~~g 280 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLINGPEIMSKLAG 280 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEE---EEEEHHHHHSSCTT
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeE---EEEEhHHhhcccch
Confidence 5688999999999887642 1 112467899999999999999999998654332 12221 0 0
Q ss_pred ------------CCCCCeEEEEEecCCChhh-------------hhHHhcCCCcC--CCCceEEEEeCChHHH-----HH
Q 037483 80 ------------GCNTKKVLLVIDDVVDIKQ-------------LEYLVGKREWF--GSGSRIIITSRDEHLL-----KT 127 (693)
Q Consensus 80 ------------~~~~~~~LlvlDdv~~~~~-------------~~~l~~~~~~~--~~~~~iliTtR~~~~~-----~~ 127 (693)
.....+.+|++|+++.... ...+....... ..+..||.||...... ..
T Consensus 281 ese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~ 360 (806)
T 3cf2_A 281 ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF 360 (806)
T ss_dssp HHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTST
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCC
Confidence 1456789999999854310 12222221111 1344456666554321 11
Q ss_pred cCCCceeeCCCCCHHHHHHHHHHhcccCCCC-chHHHHHHHHHHHHhCCCch
Q 037483 128 HGVDELCEPNGLNYDEALQLLNTKAFKTHKP-LEECAKLSERVPQYAGGLPL 178 (693)
Q Consensus 128 ~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~-~~~~~~~~~~i~~~~~g~Pl 178 (693)
...+..++++..+.++-.+++..+.-..... ..+ ...+++.+.|.--
T Consensus 361 GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfsg 408 (806)
T 3cf2_A 361 GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHVG 408 (806)
T ss_dssp TSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCCH
T ss_pred cccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCCH
Confidence 1235678999999999999998776322111 111 3457777777653
No 239
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.26 E-value=0.0016 Score=70.38 Aligned_cols=132 Identities=14% Similarity=0.171 Sum_probs=76.0
Q ss_pred CccccchhHHHHHHHHhc---CCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeE----------------EEEcc
Q 037483 18 KLVRIDSCLEELRSLMDE---GLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSS----------------FLVDE 78 (693)
Q Consensus 18 ~~vGr~~~~~~l~~~l~~---~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~----------------~~~~~ 78 (693)
+.+|.++..+.+.+.+.- ........+.|+|++|+||||||+.++......|-... |+...
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~ 161 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAM 161 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC------------------
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccC
Confidence 368888777777654432 11113568999999999999999999987644332110 11100
Q ss_pred c--------CCCCCeEEEEEecCCChhh------hhHHhcCCCcC---------------CCCceEEEEeCCh-----HH
Q 037483 79 V--------GCNTKKVLLVIDDVVDIKQ------LEYLVGKREWF---------------GSGSRIIITSRDE-----HL 124 (693)
Q Consensus 79 ~--------~~~~~~~LlvlDdv~~~~~------~~~l~~~~~~~---------------~~~~~iliTtR~~-----~~ 124 (693)
. ......-++++|+++.... ...+...+... .....+|.||... .+
T Consensus 162 ~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL 241 (543)
T 3m6a_A 162 PGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPL 241 (543)
T ss_dssp --CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHH
T ss_pred chHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHH
Confidence 0 1122334888999975421 12222222110 0334566666653 23
Q ss_pred HHHcCCCceeeCCCCCHHHHHHHHHHhc
Q 037483 125 LKTHGVDELCEPNGLNYDEALQLLNTKA 152 (693)
Q Consensus 125 ~~~~~~~~~~~l~~L~~~ea~~l~~~~~ 152 (693)
..++ .++.++.++.++-.+++..+.
T Consensus 242 ~~R~---~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 242 RDRM---EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp HHHE---EEEECCCCCHHHHHHHHHHTH
T ss_pred Hhhc---ceeeeCCCCHHHHHHHHHHHH
Confidence 4433 468999999999988887765
No 240
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.07 E-value=0.0027 Score=72.18 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=39.4
Q ss_pred CCccccchhHHHHHHHHhcCC------CCCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 17 KKLVRIDSCLEELRSLMDEGL------NDDVRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 17 ~~~vGr~~~~~~l~~~l~~~~------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
..++|.++.++.+...+.... +.....+.++|++|+|||++|+++++...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~ 513 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 468999999988887775421 11245799999999999999999998773
No 241
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.02 E-value=0.0023 Score=54.45 Aligned_cols=70 Identities=23% Similarity=0.327 Sum_probs=54.6
Q ss_pred CeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccCc-cccCCCCCCEEecccccceeeccCcccccccCCchhhhc
Q 037483 494 SKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLPA-SISGLLNLKELELEDCALKLRKSDCTIIKCIDSLKLLVN 572 (693)
Q Consensus 494 ~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~l~~l~~~~n 572 (693)
..++.++++++...+|..+ .++|++|+|++|+|+.+|. .+..+++|+.|+|++|++ .
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~--------------------~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW--------------------R 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC--------------------B
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe--------------------e
Confidence 4788899988522488654 3479999999999999985 568899999999999986 4
Q ss_pred chhhhHHHHHHHH
Q 037483 573 NGLAISMLQEYLE 585 (693)
Q Consensus 573 ~~~~~~~~~~~~~ 585 (693)
|.+...++..|+.
T Consensus 69 CdC~l~~l~~wl~ 81 (130)
T 3rfe_A 69 CDCRLVPLRAWLA 81 (130)
T ss_dssp CSGGGHHHHHHHH
T ss_pred ccCccHHHHHHHH
Confidence 5555566777765
No 242
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.99 E-value=0.0015 Score=60.62 Aligned_cols=107 Identities=17% Similarity=0.151 Sum_probs=61.1
Q ss_pred CCCCccccch----hHHHHHHHHhcCCCC-CeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc-------CCC
Q 037483 15 TLKKLVRIDS----CLEELRSLMDEGLND-DVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV-------GCN 82 (693)
Q Consensus 15 ~~~~~vGr~~----~~~~l~~~l~~~~~~-~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~-------~~~ 82 (693)
.-++|++.+. .++.+.+++...... ..+.+.|+|++|+|||+||+++++..........++.... ...
T Consensus 23 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (202)
T 2w58_A 23 SLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQ 102 (202)
T ss_dssp CTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC--
T ss_pred CHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhc
Confidence 3467777653 344555555543221 2268999999999999999999998765544455554311 000
Q ss_pred -----------CCeEEEEEecCCC--hhhh--hHHhc-CCC-cCCCCceEEEEeCC
Q 037483 83 -----------TKKVLLVIDDVVD--IKQL--EYLVG-KRE-WFGSGSRIIITSRD 121 (693)
Q Consensus 83 -----------~~~~LlvlDdv~~--~~~~--~~l~~-~~~-~~~~~~~iliTtR~ 121 (693)
.+.-++||||++. ...+ ..+.. .+. ....+.++|+||..
T Consensus 103 ~~~~~~~~~~~~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 103 DQTMNEKLDYIKKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp -CCCHHHHHHHHHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred cchHHHHHHHhcCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 1223899999954 2221 11111 111 11245678888875
No 243
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.96 E-value=0.00017 Score=65.92 Aligned_cols=115 Identities=13% Similarity=0.059 Sum_probs=67.7
Q ss_pred cCCCCccEEecCCC-cccc-----CCCccccCCCCCEEEccCCCCCCCCCCccccccccccCCCCchhhhhhcccCCCCc
Q 037483 419 GQVEILEELDISGT-TIRE-----PPSSIFAIKNLKKLSFSGCSGPPSSASWHLHFPFNLMGKSLYPVALMLFSLSGLCS 492 (693)
Q Consensus 419 ~~l~~L~~L~l~~n-~i~~-----lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 492 (693)
.+-+.|++|+|++| .|.. +-..+..-+.|+.|+|++|.+... ....+...+..-++
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~------------------ga~alA~aL~~N~t 99 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDS------------------EARGLIELIETSPS 99 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHH------------------HHTTHHHHHHHCSS
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChH------------------HHHHHHHHHhcCCc
Confidence 34456777777664 5542 223444556777777777765432 11222234444567
Q ss_pred CCeeeCCCCCCCCCC---CCccCCCCCCCCEEeCCCC---CCc-----ccCccccCCCCCCEEecccccc
Q 037483 493 LSKLDLSYCGLGEGA---IPNDIGNLCSLKELYLSKN---NFV-----TLPASISGLLNLKELELEDCAL 551 (693)
Q Consensus 493 L~~L~ls~n~l~~~~---~p~~l~~l~~L~~L~L~~n---~l~-----~lp~~l~~l~~L~~L~L~~n~~ 551 (693)
|+.|+|++|.|++.. +-..+..-+.|++|+|++| .+. .+.+.+..-++|+.|+++.|..
T Consensus 100 L~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 100 LRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp CCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred cCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 888888888774321 2234555667888888765 333 2445566677888888877654
No 244
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.95 E-value=0.0093 Score=61.43 Aligned_cols=62 Identities=15% Similarity=0.182 Sum_probs=34.8
Q ss_pred ccCCCCcCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCcccC-ccccCCCCCCEEecccc
Q 037483 486 SLSGLCSLSKLDLSYCGLGEGAIPNDIGNLCSLKELYLSKNNFVTLP-ASISGLLNLKELELEDC 549 (693)
Q Consensus 486 ~l~~l~~L~~L~ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~n 549 (693)
.|.+|++|+.+.+.++.++. .-...|.+|.+|+.+.|..+ ++.+. ..+.+|++|+.+.+..+
T Consensus 281 aF~~c~~L~~i~l~~~~i~~-I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIET-LEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TTTTCTTCCEEEECCTTCCE-ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccccccccccccccce-ehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 45566666666666655521 11234566666666666533 55554 34566666666666543
No 245
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.87 E-value=0.0041 Score=71.44 Aligned_cols=50 Identities=20% Similarity=0.314 Sum_probs=39.6
Q ss_pred CCccccchhHHHHHHHHhcCC------CCCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 17 KKLVRIDSCLEELRSLMDEGL------NDDVRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 17 ~~~vGr~~~~~~l~~~l~~~~------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
..++|.+..++.+...+.... +.....+.|+|++|+|||++|+++++...
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 357999999999888875521 11236899999999999999999998763
No 246
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.81 E-value=0.0016 Score=73.89 Aligned_cols=132 Identities=16% Similarity=0.190 Sum_probs=80.2
Q ss_pred CCccccchhHHHHHHHHhcC----------CCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEc-cc-----C
Q 037483 17 KKLVRIDSCLEELRSLMDEG----------LNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVD-EV-----G 80 (693)
Q Consensus 17 ~~~vGr~~~~~~l~~~l~~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~-~~-----~ 80 (693)
.+++|.++.+++|.+++... .-.....|.|+|++|+||||||++++......| +.+.. .. +
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~---i~v~~~~l~~~~~g 280 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLINGPEIMSKLAG 280 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE---EEEEHHHHSSSSTT
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE---EEEEchHhhhhhhh
Confidence 57999999999999887540 112346799999999999999999988654332 22221 00 0
Q ss_pred -------------CCCCeEEEEEecCCChh-------------hhhHH---hcCCCcCCCCceEEEEeCChHHHH-Hc--
Q 037483 81 -------------CNTKKVLLVIDDVVDIK-------------QLEYL---VGKREWFGSGSRIIITSRDEHLLK-TH-- 128 (693)
Q Consensus 81 -------------~~~~~~LlvlDdv~~~~-------------~~~~l---~~~~~~~~~~~~iliTtR~~~~~~-~~-- 128 (693)
....+.++++|+++... ....+ ..... ...+..+|.||....... ..
T Consensus 281 ~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-~~~~v~vI~atn~~~~ld~al~r 359 (806)
T 1ypw_A 281 ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QRAHVIVMAATNRPNSIDPALRR 359 (806)
T ss_dssp HHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-TTSCCEEEEECSCTTTSCTTTTS
T ss_pred hHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-ccccEEEecccCCchhcCHHHhc
Confidence 22356899999984221 01112 22111 123445666665532111 11
Q ss_pred --CCCceeeCCCCCHHHHHHHHHHhc
Q 037483 129 --GVDELCEPNGLNYDEALQLLNTKA 152 (693)
Q Consensus 129 --~~~~~~~l~~L~~~ea~~l~~~~~ 152 (693)
.....+.+...+.++-.+++...+
T Consensus 360 ~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 360 FGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp TTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred ccccccccccCCCCHHHHHHHHHHHH
Confidence 223557788888999889888765
No 247
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.74 E-value=0.0024 Score=59.21 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=37.0
Q ss_pred ccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 21 RIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 21 Gr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
.|++.++++.+.+.........+|+|.|..|+||||+++.+...+.
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3566778888877764444678999999999999999999988664
No 248
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.72 E-value=0.00057 Score=62.37 Aligned_cols=42 Identities=19% Similarity=0.038 Sum_probs=19.9
Q ss_pred ccCCCCcCCeeeCCCCC---CCCC---CCCccCCCCCCCCEEeCCCCC
Q 037483 486 SLSGLCSLSKLDLSYCG---LGEG---AIPNDIGNLCSLKELYLSKNN 527 (693)
Q Consensus 486 ~l~~l~~L~~L~ls~n~---l~~~---~~p~~l~~l~~L~~L~L~~n~ 527 (693)
.+..-+.|+.|+|++|. +.+. .+...+..-+.|+.|+++.|.
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 44444556666665442 2100 122233444566677766554
No 249
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.58 E-value=0.0099 Score=56.84 Aligned_cols=110 Identities=14% Similarity=0.119 Sum_probs=58.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc--CCCCCeEEEEEecCCChh----hhhHHhcC----CC---
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV--GCNTKKVLLVIDDVVDIK----QLEYLVGK----RE--- 107 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~--~~~~~~~LlvlDdv~~~~----~~~~l~~~----~~--- 107 (693)
...+.++|+||.|||.+|.++++.+.- +..+-|-...+ .--..+.+++.|+..-.. .++.+... .+
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l-~G~vn~~~~~f~l~~~~~k~i~l~Ee~~~~~d~~~~lr~i~~G~~~~id~K~ 182 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF-YGCVNWTNENFPFNDCVDKMVIWWEEGKMTAKVVESAKAILGGSKVRVDQKC 182 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC-EEECCTTCSSCTTGGGSSCSEEEECSCCEETTTHHHHHHHHTTCCEEC----
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc-cceeeccccccccccccccEEEEeccccchhHHHHHHHHHhCCCcEEEecCc
Confidence 457999999999999999999985311 10001100111 111234555666653222 23333320 00
Q ss_pred ---cCCCCceEEEEeCC-------------hHHHHHcCCCceeeCC--------CCCHHHHHHHHHHh
Q 037483 108 ---WFGSGSRIIITSRD-------------EHLLKTHGVDELCEPN--------GLNYDEALQLLNTK 151 (693)
Q Consensus 108 ---~~~~~~~iliTtR~-------------~~~~~~~~~~~~~~l~--------~L~~~ea~~l~~~~ 151 (693)
..-....+||||-. +...........++.. ++++++....|...
T Consensus 183 k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~sR~~~f~F~~~~p~~~~~lt~~~~~~f~~w~ 250 (267)
T 1u0j_A 183 KSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMFKFELTRRLDHDFGKVTKQEVKDFFRWA 250 (267)
T ss_dssp --CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHTTEEEEECCSCCCTTSCCCCHHHHHHHHHHH
T ss_pred CCcccccCCCEEEEecCCcccccccCccchhhhHHHhhhEEEEECCCcCCcccCCCCHHHHHHHHHHH
Confidence 01145678999987 2222222233445555 68888888888744
No 250
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.19 E-value=0.007 Score=55.02 Aligned_cols=77 Identities=16% Similarity=0.107 Sum_probs=45.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEcc----c--------------------------CCCCCeEEEEEe
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDE----V--------------------------GCNTKKVLLVID 91 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~----~--------------------------~~~~~~~LlvlD 91 (693)
+++.|+|+.|+||||++..++.+...+-....++... . ...++.-++++|
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~~~~dvviID 83 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIEEDTRGVFID 83 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCCTTEEEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhcCCCCEEEEE
Confidence 5788999999999999987776543221112221110 0 022345689999
Q ss_pred cCCCh--hhhhHHhcCCCcCCCCceEEEEeCC
Q 037483 92 DVVDI--KQLEYLVGKREWFGSGSRIIITSRD 121 (693)
Q Consensus 92 dv~~~--~~~~~l~~~~~~~~~~~~iliTtR~ 121 (693)
.++.. +.++.+....+ .+..|++|.+.
T Consensus 84 E~Q~~~~~~~~~l~~l~~---~~~~Vi~~Gl~ 112 (184)
T 2orw_A 84 EVQFFNPSLFEVVKDLLD---RGIDVFCAGLD 112 (184)
T ss_dssp CGGGSCTTHHHHHHHHHH---TTCEEEEEEES
T ss_pred CcccCCHHHHHHHHHHHH---CCCCEEEEeec
Confidence 98654 23333322221 37789998885
No 251
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.19 E-value=0.0024 Score=57.91 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=22.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
.+|.|.|++|+||||+|++++++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999998754
No 252
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.14 E-value=0.0043 Score=63.58 Aligned_cols=49 Identities=20% Similarity=0.235 Sum_probs=37.9
Q ss_pred CccccchhHHHHHHHHhc------------CCCCCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 18 KLVRIDSCLEELRSLMDE------------GLNDDVRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 18 ~~vGr~~~~~~l~~~l~~------------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
.++|.+..++.+...+.. ......+.|.++|++|+|||++|+++++...
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 479999999998887731 1111345789999999999999999998763
No 253
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.12 E-value=0.0064 Score=60.42 Aligned_cols=60 Identities=13% Similarity=0.203 Sum_probs=38.9
Q ss_pred CCccccc----hhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHh-cccceeEEEE
Q 037483 17 KKLVRID----SCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLIS-HEFEGSSFLV 76 (693)
Q Consensus 17 ~~~vGr~----~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~~ 76 (693)
+.|++.+ ..++.+.+++..........+.|+|++|+|||+||.++++... .....+.++.
T Consensus 124 d~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 124 SDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp GGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred hhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 4566533 3444555666543222246789999999999999999999776 4433344443
No 254
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.08 E-value=0.0053 Score=61.02 Aligned_cols=29 Identities=24% Similarity=0.431 Sum_probs=25.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
+.++|+|+|-|||||||.|..++..++..
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~ 75 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFSIL 75 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHHHC
Confidence 67999999999999999999998877654
No 255
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.99 E-value=0.0059 Score=56.89 Aligned_cols=41 Identities=20% Similarity=0.324 Sum_probs=31.0
Q ss_pred hHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 25 CLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 25 ~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
.+++|.+.+... .+...+|+|.|+.|.|||||++.++..+.
T Consensus 7 ~~~~~~~~~~~~-~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 7 LCQGVLERLDPR-QPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHSCTT-CCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 444555555433 23568999999999999999999988765
No 256
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.97 E-value=0.0035 Score=66.44 Aligned_cols=45 Identities=16% Similarity=0.095 Sum_probs=38.2
Q ss_pred CCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 16 LKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 16 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
.+.++|+++.++.+...+..+ .-|.|+|++|+|||+||+++++..
T Consensus 21 ~~~ivGq~~~i~~l~~al~~~-----~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 21 EKGLYERSHAIRLCLLAALSG-----ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp HTTCSSCHHHHHHHHHHHHHT-----CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred HhhhHHHHHHHHHHHHHHhcC-----CeeEeecCchHHHHHHHHHHHHHH
Confidence 367999999999888877753 358999999999999999998755
No 257
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.93 E-value=0.056 Score=54.61 Aligned_cols=142 Identities=12% Similarity=0.005 Sum_probs=92.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHh-ccccee-EE-EEccc------------CCCCCeEEEEEecCCC-h--hhhhH
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLIS-HEFEGS-SF-LVDEV------------GCNTKKVLLVIDDVVD-I--KQLEY 101 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~-~~f~~~-~~-~~~~~------------~~~~~~~LlvlDdv~~-~--~~~~~ 101 (693)
-.++..++|..|.||++.|.++.+.+. ..|+.. .+ +.... .+-+++-++|+|+++. . +..+.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~~~~~a 96 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQ 96 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTTCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCTTHHHH
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCCCCHHHHHHHhcCcCCccCCeEEEEECCCCCCChHHHHH
Confidence 457899999999999999999988754 334321 11 11111 1345677889999865 3 44555
Q ss_pred HhcCCCcCCCCceEEEEeCC-------hHHHHH-cCCCceeeCCCCCHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHh
Q 037483 102 LVGKREWFGSGSRIIITSRD-------EHLLKT-HGVDELCEPNGLNYDEALQLLNTKAFKTHKPLEECAKLSERVPQYA 173 (693)
Q Consensus 102 l~~~~~~~~~~~~iliTtR~-------~~~~~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 173 (693)
+...+....+++.+|+++-. ..+... .....+++..+++.++..+++...+-...... ..+.+..+++.+
T Consensus 97 Ll~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~~g~~i--~~~a~~~l~~~~ 174 (343)
T 1jr3_D 97 LLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLEL--DDAANQVLCYCY 174 (343)
T ss_dssp HHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHHTTCEE--CHHHHHHHHHSS
T ss_pred HHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHh
Confidence 65554444567777776643 234443 33456889999999999988888763322211 224467788889
Q ss_pred CCCchhHHHH
Q 037483 174 GGLPLALKVL 183 (693)
Q Consensus 174 ~g~Plal~~~ 183 (693)
+|...++...
T Consensus 175 ~gdl~~~~~e 184 (343)
T 1jr3_D 175 EGNLLALAQA 184 (343)
T ss_dssp TTCHHHHHHH
T ss_pred chHHHHHHHH
Confidence 9988776653
No 258
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.83 E-value=0.0054 Score=55.09 Aligned_cols=25 Identities=16% Similarity=0.083 Sum_probs=22.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
.+|+|.|++|+||||+|+.++++..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3789999999999999999988753
No 259
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.78 E-value=0.0065 Score=67.86 Aligned_cols=132 Identities=15% Similarity=0.208 Sum_probs=74.3
Q ss_pred CCCccccchhHHHHHHHHhcCC----------CCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEcc-------
Q 037483 16 LKKLVRIDSCLEELRSLMDEGL----------NDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDE------- 78 (693)
Q Consensus 16 ~~~~vGr~~~~~~l~~~l~~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~------- 78 (693)
-.++.|.++..++|.+.+...- -...+-|.++|++|.|||.+|++++......| +...
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f-----~~v~~~~l~s~ 550 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF-----ISIKGPELLTM 550 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEE-----EECCHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCce-----EEeccchhhcc
Confidence 3567788888888887764321 11345689999999999999999998653322 2110
Q ss_pred -c-------------CCCCCeEEEEEecCCChh----------------hhhHHhcCCCcCC--CCceEEEEeCChH---
Q 037483 79 -V-------------GCNTKKVLLVIDDVVDIK----------------QLEYLVGKREWFG--SGSRIIITSRDEH--- 123 (693)
Q Consensus 79 -~-------------~~~~~~~LlvlDdv~~~~----------------~~~~l~~~~~~~~--~~~~iliTtR~~~--- 123 (693)
. .....+++|++|+++..- ....|+..+.... .+.-||.||-.+.
T Consensus 551 ~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD 630 (806)
T 3cf2_A 551 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID 630 (806)
T ss_dssp TCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSC
T ss_pred ccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCC
Confidence 0 134568999999985321 0222333222222 2333343444322
Q ss_pred --HHHHcCCCceeeCCCCCHHHHHHHHHHhc
Q 037483 124 --LLKTHGVDELCEPNGLNYDEALQLLNTKA 152 (693)
Q Consensus 124 --~~~~~~~~~~~~l~~L~~~ea~~l~~~~~ 152 (693)
+......+..+.++.-+.++-.++|+.+.
T Consensus 631 ~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 631 PAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp HHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred HhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 22212346677888777777778887665
No 260
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.76 E-value=0.0067 Score=62.46 Aligned_cols=50 Identities=12% Similarity=0.141 Sum_probs=38.0
Q ss_pred CCccccchhHHHHHHHHh----c-----------------------CCCCCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 17 KKLVRIDSCLEELRSLMD----E-----------------------GLNDDVRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 17 ~~~vGr~~~~~~l~~~l~----~-----------------------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
..++|.++..+.|...+. . ........+.++|++|+|||++|+++++...
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 468999999988887762 0 0011235689999999999999999998764
No 261
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.71 E-value=0.0097 Score=59.38 Aligned_cols=50 Identities=18% Similarity=0.338 Sum_probs=36.0
Q ss_pred cccchhHHHHHHHHhc-CCCCCeEEEEEEcCCCchHHHHHHHHHHHHhccc
Q 037483 20 VRIDSCLEELRSLMDE-GLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEF 69 (693)
Q Consensus 20 vGr~~~~~~l~~~l~~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 69 (693)
|+.+...+++.+.+.. -..+....|.|.|++|+||||+++.++..+...|
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 4445556666666643 2233567799999999999999999998765554
No 262
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.71 E-value=0.0057 Score=55.73 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
.+.|+|.|++|+||||+|+.+++++
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999866
No 263
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.68 E-value=0.0062 Score=56.26 Aligned_cols=25 Identities=36% Similarity=0.351 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
..+|+|.|++|+||||+|+.+++.+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4589999999999999999999876
No 264
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.67 E-value=0.0057 Score=62.26 Aligned_cols=50 Identities=22% Similarity=0.144 Sum_probs=35.8
Q ss_pred cCCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 14 ETLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 14 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
..-.+++|.+...+.+......... .-|.|+|++|+|||++|+++++...
T Consensus 21 ~~f~~i~G~~~~~~~l~~~~~~~~~---~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 21 FPFSAIVGQEDMKLALLLTAVDPGI---GGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHCGGG---CCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCchhccChHHHHHHHHHHhhCCCC---ceEEEECCCCccHHHHHHHHHHhCc
Confidence 3445799999866655444332212 2399999999999999999998654
No 265
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.65 E-value=0.011 Score=56.66 Aligned_cols=44 Identities=18% Similarity=-0.022 Sum_probs=31.0
Q ss_pred ccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 21 RIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 21 Gr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
+....+.++.+....... ....|+|.|++|+||||+|+.+++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~-~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 10 STIDLLNELKRRYACLSK-PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CHHHHHHHHHHHHHHHTS-CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccC-CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 334445555544433222 56789999999999999999998754
No 266
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.62 E-value=0.0069 Score=54.84 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=20.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 037483 42 RMIGICGMGGLGKTTLVRAVYD 63 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~ 63 (693)
.+|.|.|++|+||||+|+.+++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 6899999999999999999987
No 267
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.59 E-value=0.023 Score=57.50 Aligned_cols=81 Identities=14% Similarity=0.224 Sum_probs=53.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhcccceeEEE-Ecc--c---------------------------CCCCCeEEEEEe
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFL-VDE--V---------------------------GCNTKKVLLVID 91 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~-~~~--~---------------------------~~~~~~~LlvlD 91 (693)
.+++|.|+.|.||||+.+.+...+.......++. .+. . .+...+=++++|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillD 203 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVG 203 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecC
Confidence 5999999999999999999987664432222221 110 0 145567788999
Q ss_pred cCCChhhhhHHhcCCCcCCCCceEEEEeCChHHH
Q 037483 92 DVVDIKQLEYLVGKREWFGSGSRIIITSRDEHLL 125 (693)
Q Consensus 92 dv~~~~~~~~l~~~~~~~~~~~~iliTtR~~~~~ 125 (693)
...+.+.++.+.... ..|..|++|+-.....
T Consensus 204 Ep~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 204 EMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp CCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred CCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 998776655544331 3466788888875544
No 268
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.57 E-value=0.0097 Score=59.71 Aligned_cols=29 Identities=21% Similarity=0.093 Sum_probs=24.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccc
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISHEF 69 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 69 (693)
.+.++|+|.+|+|||||++.+++.+....
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~~~ 202 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAYNH 202 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHHHC
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhhcC
Confidence 46899999999999999999988765433
No 269
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.57 E-value=0.015 Score=57.11 Aligned_cols=30 Identities=23% Similarity=0.263 Sum_probs=25.8
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 38 NDDVRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 38 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
.+...+|+|.|..|+||||||+.+...+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 346789999999999999999999887654
No 270
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.57 E-value=0.012 Score=53.99 Aligned_cols=26 Identities=23% Similarity=0.544 Sum_probs=23.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
..|+|.|++|+||||+|+.+++++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999997754
No 271
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.55 E-value=0.0089 Score=54.78 Aligned_cols=26 Identities=31% Similarity=0.323 Sum_probs=23.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
...+|.|.|++|+||||+|+.+++..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 35789999999999999999998865
No 272
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.54 E-value=0.0046 Score=56.05 Aligned_cols=29 Identities=34% Similarity=0.566 Sum_probs=23.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhcccc
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLISHEFE 70 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 70 (693)
|.|+|.|++|+|||||++++.++....|.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~ 30 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeE
Confidence 45899999999999999999876554443
No 273
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.52 E-value=0.0078 Score=53.83 Aligned_cols=27 Identities=19% Similarity=0.329 Sum_probs=22.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
..++|+|.|++|+||||+|+.+++++.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999988653
No 274
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.47 E-value=0.015 Score=53.62 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=24.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
...+|+|.|++|.||||+|+.++..+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 458999999999999999999998775
No 275
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.42 E-value=0.0069 Score=54.87 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
.+.|+|.|++|+||||+|+.+++.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999998765
No 276
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.39 E-value=0.017 Score=52.64 Aligned_cols=28 Identities=29% Similarity=0.464 Sum_probs=24.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
...+|+|.|++|+||||+++.++..+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4578999999999999999999987754
No 277
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.39 E-value=0.0082 Score=54.01 Aligned_cols=20 Identities=35% Similarity=0.630 Sum_probs=18.8
Q ss_pred EEEEEEcCCCchHHHHHHHH
Q 037483 42 RMIGICGMGGLGKTTLVRAV 61 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~ 61 (693)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 278
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.36 E-value=0.0097 Score=57.33 Aligned_cols=27 Identities=22% Similarity=0.475 Sum_probs=24.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
...+|+|.|++|+||||+|+.+++.+.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 568999999999999999999988654
No 279
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.24 E-value=0.012 Score=56.70 Aligned_cols=24 Identities=21% Similarity=0.106 Sum_probs=21.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
.+|+|.|++|+||||||++++.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999999865
No 280
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.20 E-value=0.011 Score=53.21 Aligned_cols=24 Identities=38% Similarity=0.446 Sum_probs=21.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
.|+|.|++|+||||+|+.++++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998653
No 281
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.20 E-value=0.012 Score=53.87 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=23.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
.+|+|.|++|+||||+|+.++++...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 57999999999999999999987653
No 282
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.20 E-value=0.013 Score=53.81 Aligned_cols=25 Identities=20% Similarity=0.192 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
..+|+|.|++|+||||+|+.+++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998764
No 283
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.20 E-value=0.018 Score=56.44 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=23.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
...+|.|.|++|+||||+|+.++++.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999998754
No 284
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.20 E-value=0.021 Score=53.21 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=24.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
..+|+|.|++|+||||+|+.+++.+...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 3689999999999999999999877543
No 285
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.18 E-value=0.0091 Score=53.61 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=21.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
.+|+|.|++|+||||+++.++...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998764
No 286
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.17 E-value=0.015 Score=52.89 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
...|+|.|++|+||||+|+.+++..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998765
No 287
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.10 E-value=0.012 Score=54.34 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
.|+|.|++|+||||+|+.+++.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998764
No 288
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.10 E-value=0.018 Score=53.23 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
..+|+|.|++|+||||+++.++...
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998865
No 289
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.10 E-value=0.011 Score=54.76 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
..+|+|.|++|+||||+|+.+++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998865
No 290
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.07 E-value=0.012 Score=53.84 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDL 64 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~ 64 (693)
..+++|.|++|+||||+++.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 478999999999999999999764
No 291
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.03 E-value=0.019 Score=53.53 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=24.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
..+|+|.|++|+||||+|+.+++.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999877543
No 292
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.03 E-value=0.017 Score=59.87 Aligned_cols=51 Identities=16% Similarity=0.228 Sum_probs=38.2
Q ss_pred CCccccchhHHHHHHHHhcC-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 17 KKLVRIDSCLEELRSLMDEG-----------LNDDVRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 17 ~~~vGr~~~~~~l~~~l~~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
.+++|.++..+.+...+... ..-..+-|.++|++|+|||++|++++.....
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 57899998888887666221 0012456999999999999999999987643
No 293
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.03 E-value=0.012 Score=54.00 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
..+|+|.|++|+||||+|+.+++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998765
No 294
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.03 E-value=0.016 Score=53.64 Aligned_cols=26 Identities=27% Similarity=0.247 Sum_probs=23.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
...+|+|.|++|+||||+|+.+++..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56899999999999999999998753
No 295
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.01 E-value=0.025 Score=56.13 Aligned_cols=46 Identities=24% Similarity=0.244 Sum_probs=32.4
Q ss_pred ccchhHHHHHHHHhcC-CCCCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 21 RIDSCLEELRSLMDEG-LNDDVRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 21 Gr~~~~~~l~~~l~~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
|-...+..+...+... ..+.+.+|+|.|+.|+||||+|+.+...+.
T Consensus 71 ~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 71 TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3334444444444433 344678999999999999999999987665
No 296
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.00 E-value=0.008 Score=54.58 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=18.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
..+|+|.|++|+||||+|+.+++.+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999998754
No 297
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.00 E-value=0.013 Score=53.21 Aligned_cols=24 Identities=29% Similarity=0.267 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDL 64 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~ 64 (693)
...|+|+|++|+||||+|+.+++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999999875
No 298
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.99 E-value=0.016 Score=53.47 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=23.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
....|+|.|++|+||||+|+.+++..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998865
No 299
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.97 E-value=0.017 Score=51.98 Aligned_cols=26 Identities=23% Similarity=0.427 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
...+|+|.|++|+||||+++.++...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 35789999999999999999998764
No 300
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.96 E-value=0.012 Score=52.89 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
++|+|.|++|+||||+|+.+++++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998865
No 301
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.95 E-value=0.016 Score=56.10 Aligned_cols=26 Identities=27% Similarity=0.607 Sum_probs=23.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
..+|+|.|++|+||||+|+.+++.+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999998754
No 302
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.94 E-value=0.023 Score=50.38 Aligned_cols=29 Identities=24% Similarity=0.265 Sum_probs=24.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
..++++|.|..|+|||||+..++..++.+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 35789999999999999999999877654
No 303
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.92 E-value=0.017 Score=51.50 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
.|+|.|++|+||||+|+.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998865
No 304
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.88 E-value=0.016 Score=52.58 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
+|+|.|++|+||||+|+.++++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998865
No 305
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.87 E-value=0.014 Score=52.95 Aligned_cols=26 Identities=12% Similarity=0.281 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
.++++|.|+.|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999987643
No 306
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.85 E-value=0.021 Score=52.16 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
...+|+|.|++|+||||+|+.+++..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998765
No 307
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.84 E-value=0.012 Score=54.47 Aligned_cols=27 Identities=30% Similarity=0.614 Sum_probs=23.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
..++|+|.|++|+||||+++.+.+...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356899999999999999999988653
No 308
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.80 E-value=0.036 Score=55.22 Aligned_cols=36 Identities=14% Similarity=0.091 Sum_probs=27.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEE
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLV 76 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 76 (693)
..++.|.|.+|+||||+|..++..+..+-..++|+.
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 468999999999999999999876654323444443
No 309
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.77 E-value=0.02 Score=53.22 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=23.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
..++|.|.|+||+||||.|+.+++++
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 57999999999999999999998754
No 310
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.77 E-value=0.055 Score=45.75 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=15.8
Q ss_pred CccEEecCCCccccCCCc-cccCCCCCEEEccCC
Q 037483 423 ILEELDISGTTIREPPSS-IFAIKNLKKLSFSGC 455 (693)
Q Consensus 423 ~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~~ 455 (693)
+|++|+|++|.|+.+|.. +..+++|+.|+|.+|
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 355555555555555332 334444555544444
No 311
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.76 E-value=0.017 Score=53.08 Aligned_cols=25 Identities=28% Similarity=0.309 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
..+|+|.|++|+||||+|+.++++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998865
No 312
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.74 E-value=0.074 Score=55.02 Aligned_cols=29 Identities=24% Similarity=0.368 Sum_probs=25.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
.+.+|.++|.+|+||||++..++..++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 47899999999999999999999877653
No 313
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=94.73 E-value=0.051 Score=49.80 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=19.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDL 64 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~ 64 (693)
.++.|+|.+|.|||++|.+....
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 47889999999999999886543
No 314
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.72 E-value=0.014 Score=53.10 Aligned_cols=31 Identities=35% Similarity=0.498 Sum_probs=25.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccccee
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLISHEFEGS 72 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~ 72 (693)
++++|.|+.|+|||||++.+.......|...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~ 32 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFS 32 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccceEE
Confidence 5789999999999999999998765444433
No 315
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.71 E-value=0.016 Score=53.90 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=24.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
..+|+|.|++|+||||+|+.+++.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999987654
No 316
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.69 E-value=0.025 Score=56.65 Aligned_cols=39 Identities=21% Similarity=0.112 Sum_probs=28.6
Q ss_pred HHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 28 ELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 28 ~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
+..+.+..-. +.+.++|.|.+|+|||+|+..+++.+...
T Consensus 164 raID~l~Pig--rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~ 202 (427)
T 3l0o_A 164 RLIDLFAPIG--KGQRGMIVAPPKAGKTTILKEIANGIAEN 202 (427)
T ss_dssp HHHHHHSCCB--TTCEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred hhhhhccccc--CCceEEEecCCCCChhHHHHHHHHHHhhc
Confidence 4445554422 34578999999999999999999876543
No 317
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.69 E-value=0.019 Score=52.94 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=22.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDL 64 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~ 64 (693)
...+|+|.|+.|+||||+|+.+++.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 5789999999999999999999874
No 318
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.66 E-value=0.028 Score=54.02 Aligned_cols=27 Identities=30% Similarity=0.287 Sum_probs=23.9
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 39 DDVRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 39 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
....+|.|.|++|+||||+|+.+++..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 356899999999999999999998765
No 319
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.66 E-value=0.049 Score=53.73 Aligned_cols=44 Identities=20% Similarity=0.250 Sum_probs=32.4
Q ss_pred hhHHHHHHHHhcCC-----CCCeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 24 SCLEELRSLMDEGL-----NDDVRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 24 ~~~~~l~~~l~~~~-----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
.-.++|.+.+.... .+...+++|+|.+|+||||++..++..++.
T Consensus 82 ~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 82 SLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp HHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 34555666664321 235689999999999999999999987654
No 320
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.65 E-value=0.018 Score=54.04 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
...|+|.|++|+||||+|+.+++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998865
No 321
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.65 E-value=0.056 Score=53.72 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=25.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
..++|+|+|.+|+||||++..++..++.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999987654
No 322
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.63 E-value=0.018 Score=53.53 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=23.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
...+|+|.|+.|+|||||++.++....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 356899999999999999999987653
No 323
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.62 E-value=0.021 Score=52.29 Aligned_cols=24 Identities=33% Similarity=0.692 Sum_probs=22.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
+|+|.|++|+||||+|+.+++.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 324
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.62 E-value=0.017 Score=52.68 Aligned_cols=27 Identities=15% Similarity=0.356 Sum_probs=23.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
..++|+|.|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999987644
No 325
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.61 E-value=0.06 Score=54.66 Aligned_cols=28 Identities=29% Similarity=0.503 Sum_probs=24.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
+..+|+|+|.+|+|||||+.+++.....
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6789999999999999999999876644
No 326
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.57 E-value=0.021 Score=52.03 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=20.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 037483 42 RMIGICGMGGLGKTTLVRAVYD 63 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~ 63 (693)
.+++|.|++|.||||+++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5799999999999999999975
No 327
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.57 E-value=0.022 Score=62.49 Aligned_cols=49 Identities=20% Similarity=0.409 Sum_probs=40.4
Q ss_pred CCCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 15 TLKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 15 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
.-..++|.+..++.+...+..+ ..+.|+|++|+||||||+.++..+...
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g-----~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQK-----RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTT-----CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred ccceEECchhhHhhccccccCC-----CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 3357899999998888888753 469999999999999999999866443
No 328
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=94.55 E-value=0.53 Score=48.18 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=37.2
Q ss_pred CCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 037483 17 KKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDL 64 (693)
Q Consensus 17 ~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 64 (693)
..++|....+.++.+.+...+..+. .|.|.|.+|+|||++|+.+...
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a~~~~-~vli~Ge~GtGK~~lAr~ih~~ 183 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKISCAEC-PVLITGESGVGKEVVARLIHKL 183 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHTTCCS-CEEEECSTTSSHHHHHHHHHHH
T ss_pred hhhhhccHHhhHHHHHHHHhcCCCC-CeEEecCCCcCHHHHHHHHHHh
Confidence 4688998888888888766444233 3599999999999999988764
No 329
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.47 E-value=0.023 Score=53.57 Aligned_cols=24 Identities=38% Similarity=0.534 Sum_probs=21.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
.+|+|.|++|+||||+|+.++..+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998754
No 330
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.47 E-value=0.017 Score=54.34 Aligned_cols=26 Identities=19% Similarity=0.107 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
...|+|.|++|+||||+|+.+++++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999998653
No 331
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.43 E-value=0.088 Score=55.66 Aligned_cols=57 Identities=26% Similarity=0.339 Sum_probs=38.4
Q ss_pred HHHHHHHhcCC------CCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEcccCCCCCeEEEEEecCCChh
Q 037483 27 EELRSLMDEGL------NDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEVGCNTKKVLLVIDDVVDIK 97 (693)
Q Consensus 27 ~~l~~~l~~~~------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~LlvlDdv~~~~ 97 (693)
++|.+++.... ....++|+|+|.+|+||||++.+++..++.+ ++++++|=.|.....
T Consensus 81 ~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~--------------G~kVllVd~D~~r~a 143 (504)
T 2j37_W 81 KELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRK--------------GWKTCLICADTFRAG 143 (504)
T ss_dssp HHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHT--------------TCCEEEEEECCSSSH
T ss_pred HHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhC--------------CCeEEEEeccccchh
Confidence 44555654421 1357899999999999999999999876542 456677766665543
No 332
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.42 E-value=0.031 Score=51.02 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=22.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDL 64 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~ 64 (693)
.-.+|+|+|+.|+||||+|+.+++.
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 5688999999999999999999875
No 333
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.40 E-value=0.025 Score=52.89 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
.|+|.|++|+||||+|+.++++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998754
No 334
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.35 E-value=0.026 Score=51.75 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=22.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
.|+|.|+.|+||||+|+.+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987643
No 335
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.33 E-value=0.025 Score=52.45 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDL 64 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~ 64 (693)
...+|+|.|++|.||||+|+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4679999999999999999998763
No 336
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.33 E-value=0.023 Score=52.60 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=22.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
..+|+|.|++|+||||+++.++...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999999998754
No 337
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.33 E-value=0.018 Score=54.30 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
...|+|.|++|+||||+|+.+++..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999998754
No 338
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.32 E-value=0.043 Score=51.36 Aligned_cols=45 Identities=27% Similarity=0.327 Sum_probs=33.3
Q ss_pred ccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 21 RIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 21 Gr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
+.++..+++.+.+... ..++|+|.|.+|+|||||+.++.......
T Consensus 13 ~~~~~~~~~~~~~~~~---~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 13 ENKRLAEKNREALRES---GTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHHHHHHH---TCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred hcHHHHHHHHHhhccc---CceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 3445556666655432 56899999999999999999998875444
No 339
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.31 E-value=0.023 Score=52.62 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 037483 43 MIGICGMGGLGKTTLVRAVYD 63 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~ 63 (693)
+|+|.|+.|+||||+++.++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999987
No 340
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.27 E-value=0.031 Score=51.99 Aligned_cols=27 Identities=37% Similarity=0.453 Sum_probs=23.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
...+|+|.|+.|.|||||++.++..+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999988654
No 341
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.22 E-value=0.026 Score=54.03 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
..+|+|.|++|+||||+++.+++++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999765
No 342
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.22 E-value=0.065 Score=50.31 Aligned_cols=41 Identities=24% Similarity=0.383 Sum_probs=29.6
Q ss_pred hHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 25 CLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 25 ~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
..+.+.+.+.. .....|+|.|.+|+|||||+..++......
T Consensus 25 ~a~~~r~~~~~---~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 25 LADKNRKLLNK---HGVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp HHHHHHHHHHH---TTCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHh---CCCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 34455555432 246889999999999999999998765433
No 343
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.21 E-value=0.045 Score=54.36 Aligned_cols=30 Identities=23% Similarity=0.417 Sum_probs=25.6
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 39 DDVRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 39 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
...++|+|+|-||+||||+|..++..++..
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~ 68 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL 68 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHC
Confidence 357889999999999999999999877654
No 344
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.20 E-value=0.06 Score=52.63 Aligned_cols=37 Identities=11% Similarity=0.007 Sum_probs=29.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhcc--cceeEEEEccc
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLISHE--FEGSSFLVDEV 79 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~~~~ 79 (693)
++.|+|++|+||||||.+++...... -...+|+..+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~ 68 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF 68 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 68999999999999999998876654 24566776643
No 345
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.19 E-value=0.034 Score=51.74 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=23.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
...+|+|.|++|+||||+|+.+++.+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 357899999999999999999998764
No 346
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.19 E-value=0.031 Score=50.35 Aligned_cols=24 Identities=42% Similarity=0.601 Sum_probs=21.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
.++|.|+.|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 347
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.18 E-value=0.098 Score=47.33 Aligned_cols=25 Identities=24% Similarity=0.097 Sum_probs=19.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
...|.|++-.|.||||+|..++-+.
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA 52 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARA 52 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 3467777777799999999887653
No 348
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.16 E-value=0.035 Score=50.05 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=23.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
...+|+|.|+.|+||||+++.++..+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 357899999999999999999998764
No 349
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.16 E-value=0.044 Score=55.12 Aligned_cols=52 Identities=21% Similarity=0.159 Sum_probs=36.2
Q ss_pred HHHHHHHHh-cCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEcc
Q 037483 26 LEELRSLMD-EGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDE 78 (693)
Q Consensus 26 ~~~l~~~l~-~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~ 78 (693)
...|...|. .+-. ...++.|.|++|+||||||.+++......-..++|+..+
T Consensus 46 ~~~LD~~Lg~GGi~-~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E 98 (356)
T 3hr8_A 46 SLAIDIATGVGGYP-RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAE 98 (356)
T ss_dssp CHHHHHHTSSSSEE-TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CHHHHHHhccCCcc-CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 456666665 2212 357999999999999999999998765443345566543
No 350
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.14 E-value=0.045 Score=56.79 Aligned_cols=28 Identities=36% Similarity=0.612 Sum_probs=23.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccc
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLISHEF 69 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f 69 (693)
+.++|+|.+|+|||||+..++.....++
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~ 179 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEH 179 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhcc
Confidence 3589999999999999999987655443
No 351
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.12 E-value=0.028 Score=52.01 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
..+++|.|+.|+|||||++.++...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998754
No 352
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.11 E-value=0.029 Score=52.02 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=20.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 037483 42 RMIGICGMGGLGKTTLVRAVYD 63 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~ 63 (693)
.+|+|.|+.|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999975
No 353
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.10 E-value=0.03 Score=52.34 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
.|+|.|++|+||||+|+.++++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998643
No 354
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.05 E-value=0.08 Score=55.01 Aligned_cols=44 Identities=25% Similarity=0.321 Sum_probs=32.9
Q ss_pred hHHHHHHHHhcCC------CCCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 25 CLEELRSLMDEGL------NDDVRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 25 ~~~~l~~~l~~~~------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
-.+++.+++.... ....++|.++|.+|+||||++..++..++.+
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 3456666665421 1357899999999999999999999877654
No 355
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.02 E-value=0.032 Score=52.84 Aligned_cols=25 Identities=20% Similarity=0.065 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
...|+|.|++|+||||+|+.+++++
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999875
No 356
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.01 E-value=0.047 Score=52.09 Aligned_cols=36 Identities=17% Similarity=0.082 Sum_probs=26.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEE
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLV 76 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 76 (693)
..++.|.|.+|+||||||.+++......-..++|+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 468999999999999999998876543323344443
No 357
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.98 E-value=0.025 Score=52.76 Aligned_cols=25 Identities=36% Similarity=0.538 Sum_probs=22.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
+|+|.|+.|+||||+|+.+.+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987754
No 358
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.97 E-value=0.029 Score=51.82 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=22.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
...|+|.|++|+||||+++.+++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998755
No 359
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.96 E-value=0.077 Score=52.87 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=24.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
...+++|+|+.|+||||+++.++..++.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5789999999999999999999986654
No 360
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.91 E-value=0.049 Score=51.43 Aligned_cols=27 Identities=22% Similarity=0.137 Sum_probs=23.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
..+++|.|++|+|||||++.++.....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~ 49 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLR 49 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 368999999999999999999876543
No 361
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.84 E-value=0.059 Score=50.33 Aligned_cols=23 Identities=26% Similarity=0.083 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYD 63 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~ 63 (693)
..+++|.|.+|+||||||..++.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 362
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.84 E-value=0.074 Score=49.33 Aligned_cols=28 Identities=14% Similarity=0.044 Sum_probs=23.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
.-.|.+.|.||+||||+|..++.....+
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 3458899999999999999998876543
No 363
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.83 E-value=0.034 Score=54.38 Aligned_cols=24 Identities=21% Similarity=0.624 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYD 63 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~ 63 (693)
...+|+|.|++|+||||+|+.+++
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999983
No 364
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.82 E-value=0.032 Score=53.31 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=22.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
..|+|.|++|.||||+++.++..+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999998653
No 365
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=93.81 E-value=0.04 Score=54.13 Aligned_cols=24 Identities=38% Similarity=0.497 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDL 64 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~ 64 (693)
.+++.|+|++|+|||+||.+++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 357889999999999999999876
No 366
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.80 E-value=0.041 Score=51.49 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYD 63 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~ 63 (693)
..+|+|.|+.|+||||+++.+++
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
No 367
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.78 E-value=0.087 Score=51.89 Aligned_cols=28 Identities=29% Similarity=0.358 Sum_probs=24.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
...+++|+|+.|+||||+++.++..++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999987654
No 368
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.78 E-value=0.042 Score=57.12 Aligned_cols=29 Identities=28% Similarity=0.381 Sum_probs=25.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
..++|+|+|.+|+||||+|..++...+.+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~ 126 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45799999999999999999999876543
No 369
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.77 E-value=0.039 Score=51.87 Aligned_cols=23 Identities=39% Similarity=0.267 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
.|+|.|++|+||||+|+.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998865
No 370
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.75 E-value=0.036 Score=51.81 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=21.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
..|+|.|++|+||||+|+.+++++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998865
No 371
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.74 E-value=0.12 Score=52.77 Aligned_cols=28 Identities=29% Similarity=0.495 Sum_probs=24.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
...+++|+|+.|.||||+++.++..+..
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 3568999999999999999999886543
No 372
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.74 E-value=0.038 Score=54.98 Aligned_cols=24 Identities=33% Similarity=0.268 Sum_probs=22.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
.+|+|.|+.|+||||||..+++.+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999999865
No 373
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.73 E-value=0.066 Score=53.09 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=24.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
...+|+|.|+.|.|||||++.+...+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 568999999999999999999988664
No 374
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.73 E-value=0.042 Score=51.69 Aligned_cols=25 Identities=20% Similarity=0.422 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
..+|+|.|++|.||||+|+.+++.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998765
No 375
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.72 E-value=0.043 Score=50.81 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
+|+|.|++|+||||+|+.+++.+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999988653
No 376
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.71 E-value=0.039 Score=51.48 Aligned_cols=23 Identities=22% Similarity=0.156 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
.|+|.|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999998865
No 377
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.71 E-value=0.036 Score=53.20 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
..+|+|.|+.|+||||+++.+++++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999754
No 378
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.69 E-value=0.047 Score=52.17 Aligned_cols=26 Identities=27% Similarity=0.510 Sum_probs=23.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
...+|+|.|+.|+|||||++.++..+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998865
No 379
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.66 E-value=0.036 Score=54.79 Aligned_cols=25 Identities=32% Similarity=0.304 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
.++|+|.|+.|+||||||..++++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998854
No 380
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.64 E-value=0.032 Score=51.32 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
.++++|+|+.|+|||||++.+.....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 35799999999999999999988664
No 381
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.62 E-value=0.061 Score=51.15 Aligned_cols=25 Identities=16% Similarity=0.096 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
..+++|.|++|+|||||+..++..+
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4689999999999999999998753
No 382
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.62 E-value=0.06 Score=53.10 Aligned_cols=29 Identities=24% Similarity=0.384 Sum_probs=25.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
...+++|+|+.|+||||+++.++..++..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 45799999999999999999999876543
No 383
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=93.60 E-value=0.71 Score=46.85 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=36.9
Q ss_pred CCCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 16 LKKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 16 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
...++|....+.++.+.+..... ....|.|+|.+|.||+++|+.+.+.-
T Consensus 128 ~~~~ig~s~~~~~~~~~~~~~a~-~~~~vli~GesGtGKe~lAr~ih~~s 176 (368)
T 3dzd_A 128 EIEFVGEHPKILEIKRLIPKIAK-SKAPVLITGESGTGKEIVARLIHRYS 176 (368)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHHT-SCSCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHhhhhhhhc-cchhheEEeCCCchHHHHHHHHHHhc
Confidence 35689998888888777655332 22347799999999999999987654
No 384
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.58 E-value=0.092 Score=54.27 Aligned_cols=29 Identities=24% Similarity=0.230 Sum_probs=25.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
..++|.++|.+|+||||++..++..++.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 47899999999999999999999876543
No 385
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=93.58 E-value=0.064 Score=54.18 Aligned_cols=52 Identities=29% Similarity=0.282 Sum_probs=35.7
Q ss_pred HHHHHHHHh-cCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEcc
Q 037483 26 LEELRSLMD-EGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDE 78 (693)
Q Consensus 26 ~~~l~~~l~-~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~ 78 (693)
...|..++. .+-. ..+++.|.|.+|+||||||.+++......-..++|+..+
T Consensus 48 ~~~LD~~Lg~GGl~-~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 48 SLSLDIALGAGGLP-MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp CHHHHHHTSSSSEE-TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CHHHHHHhccCCcc-CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 445555554 2211 346899999999999999999988765543456666653
No 386
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.57 E-value=0.036 Score=49.60 Aligned_cols=21 Identities=24% Similarity=0.512 Sum_probs=19.2
Q ss_pred eEEEEEEcCCCchHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAV 61 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~ 61 (693)
..+++|.|+.|.|||||++.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 478999999999999999984
No 387
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.56 E-value=0.051 Score=53.86 Aligned_cols=28 Identities=29% Similarity=0.462 Sum_probs=24.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
...+|+|.|+.|+|||||++.++..+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 5789999999999999999999886643
No 388
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.55 E-value=0.047 Score=50.42 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
+|.|.|+||+||+|.|+.++++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998753
No 389
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.53 E-value=0.081 Score=51.00 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=24.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
+..++++.|.||+||||++..++....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999999998765
No 390
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=93.46 E-value=0.065 Score=54.06 Aligned_cols=53 Identities=25% Similarity=0.176 Sum_probs=35.9
Q ss_pred hHHHHHHHHh-cCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEcc
Q 037483 25 CLEELRSLMD-EGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDE 78 (693)
Q Consensus 25 ~~~~l~~~l~-~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~ 78 (693)
-...|..+|. .+-. ..+++.|+|.+|+||||||.+++......-..+.|+..+
T Consensus 45 G~~~LD~~Lg~GGl~-~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 45 GSISLDVALGIGGLP-RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp SCHHHHHHTSSSSEE-TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCHHHHHHhccCCcc-CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 3455666665 2211 346899999999999999999987665443445565543
No 391
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.45 E-value=0.031 Score=55.42 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=22.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
.++|+|.|+.|+||||||.++++++
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 4689999999999999999998743
No 392
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.38 E-value=0.077 Score=47.43 Aligned_cols=28 Identities=21% Similarity=0.432 Sum_probs=24.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
..++++|.|..|+|||||+..+...+..
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 3578999999999999999999887643
No 393
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.38 E-value=0.087 Score=49.55 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
...+++|.|++|+|||||++.++..+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999998754
No 394
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.28 E-value=0.11 Score=51.15 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=24.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
..++++.|.+|+||||++..++..+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~ 124 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK 124 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 679999999999999999999987654
No 395
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.27 E-value=0.071 Score=50.93 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYD 63 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~ 63 (693)
..+++|.|+.|+|||||++.++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 396
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.25 E-value=0.052 Score=57.41 Aligned_cols=49 Identities=10% Similarity=-0.008 Sum_probs=35.7
Q ss_pred CccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 18 KLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 18 ~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
..+.|.+..+.+.+..... .....+|.+.|++|.||||+|+++++++..
T Consensus 373 ~~f~rpeV~~vLr~~~~~~-~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 373 EWFSYPEVVKILRESNPPR-PKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTTSCHHHHHHHHHHSCCG-GGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccccChhhHHHHHHhcccc-cccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 4556666666666655221 124578999999999999999999998764
No 397
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.24 E-value=0.053 Score=49.40 Aligned_cols=24 Identities=29% Similarity=0.238 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYD 63 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~ 63 (693)
....|+|.|.+|+|||||+..+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456799999999999999999876
No 398
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.24 E-value=0.039 Score=49.95 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDL 64 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~ 64 (693)
.+.|.|.|++|+||||||.+++++
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 367899999999999999999864
No 399
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.24 E-value=0.085 Score=50.76 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=26.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEE
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSF 74 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~ 74 (693)
...+++|+|+.|.||||+++.++..+...+.+.++
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~ 58 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHII 58 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEE
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEE
Confidence 34799999999999999999998866543334443
No 400
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.23 E-value=0.12 Score=52.07 Aligned_cols=28 Identities=29% Similarity=0.358 Sum_probs=24.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
...+++|+|+.|+||||+++.++..++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 4689999999999999999999987654
No 401
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.16 E-value=0.051 Score=53.73 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=21.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDL 64 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~ 64 (693)
.+|.|.|++|+||||+|+.++++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999999999874
No 402
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.14 E-value=0.058 Score=52.66 Aligned_cols=26 Identities=23% Similarity=0.246 Sum_probs=23.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
..++|+|.|+.|+||||||.+++++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 45789999999999999999998753
No 403
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.14 E-value=0.089 Score=50.97 Aligned_cols=27 Identities=30% Similarity=0.513 Sum_probs=23.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
++|+|.|-||+||||+|..++..++.+
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~ 28 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAM 28 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHC
Confidence 577889999999999999999887654
No 404
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.14 E-value=0.067 Score=52.58 Aligned_cols=27 Identities=26% Similarity=0.339 Sum_probs=24.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
..++++|+|.+|+||||++..++..++
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999998765
No 405
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.11 E-value=0.058 Score=52.72 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
.++|+|.|+.|+||||||..++++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4689999999999999999998743
No 406
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.04 E-value=0.1 Score=48.66 Aligned_cols=29 Identities=17% Similarity=-0.117 Sum_probs=25.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
...++.|+|.+|+||||++..++.+...+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~ 39 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYA 39 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 45799999999999999999999877654
No 407
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.03 E-value=0.073 Score=50.14 Aligned_cols=28 Identities=32% Similarity=0.449 Sum_probs=25.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
....|+|.|++|+||||+++.+++.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4578999999999999999999998765
No 408
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.02 E-value=0.084 Score=52.04 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=23.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
..+++|.|.+|+|||||++.++..+..
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999887654
No 409
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.01 E-value=0.07 Score=46.84 Aligned_cols=26 Identities=38% Similarity=0.428 Sum_probs=23.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
...+++|.|+.|.|||||++.++..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 35789999999999999999999866
No 410
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=92.98 E-value=0.14 Score=51.53 Aligned_cols=26 Identities=19% Similarity=0.142 Sum_probs=23.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
...++.|+|.+|+|||+||..++...
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998764
No 411
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.95 E-value=0.061 Score=53.70 Aligned_cols=57 Identities=16% Similarity=0.155 Sum_probs=37.0
Q ss_pred CccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEE
Q 037483 18 KLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLV 76 (693)
Q Consensus 18 ~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 76 (693)
...|...-+..|.+++..- . ...++.|.|.+|+||||+|..++..+...-..+.|+.
T Consensus 25 ~~~gi~TG~~~LD~~~gGl-~-~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS 81 (338)
T 4a1f_A 25 EVTGIPTGFVQLDNYTSGF-N-KGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS 81 (338)
T ss_dssp CCCSBCCSCHHHHHHHCSB-C-TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CcCcccCCChHHHHHhcCC-C-CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3444444455565555321 1 3468999999999999999999987654323344443
No 412
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.94 E-value=0.11 Score=54.65 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 26 LEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 26 ~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
+..|.+++ .+-. ...++.|.|.+|+||||+|..++..+..
T Consensus 187 ~~~LD~~l-gGl~-~G~l~ii~G~pg~GKT~lal~ia~~~a~ 226 (444)
T 2q6t_A 187 FKELDQLI-GTLG-PGSLNIIAARPAMGKTAFALTIAQNAAL 226 (444)
T ss_dssp CHHHHHHH-CCCC-TTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CHhhhhhc-CCcC-CCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 34454555 2222 3468999999999999999999987654
No 413
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=92.91 E-value=0.097 Score=51.37 Aligned_cols=28 Identities=29% Similarity=0.532 Sum_probs=24.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
.++|+|.|-||+||||+|..++..++..
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~ 29 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEM 29 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHC
Confidence 3678889999999999999999877654
No 414
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.87 E-value=0.057 Score=50.01 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
..+++|.|+.|+|||||++.++..+.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999987653
No 415
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.86 E-value=0.047 Score=51.10 Aligned_cols=25 Identities=32% Similarity=0.663 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
..+++|.|+.|+|||||++.++...
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998754
No 416
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.86 E-value=0.056 Score=50.47 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=23.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
..+++|.|+.|+|||||++.++....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 56899999999999999999988654
No 417
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.84 E-value=0.1 Score=50.94 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=23.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
..++.|.|++|+|||||+..++..+.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999987655
No 418
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.83 E-value=0.18 Score=54.55 Aligned_cols=78 Identities=23% Similarity=0.286 Sum_probs=47.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEccc---------------------C-----------CCCCeEEE
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDEV---------------------G-----------CNTKKVLL 88 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~---------------------~-----------~~~~~~Ll 88 (693)
.+++.|+|.||.||||++..+...+...-..+....... + ...+.-++
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvl 283 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLL 283 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEE
Confidence 368999999999999999999876544332222222100 0 01123489
Q ss_pred EEecCCCh--hhhhHHhcCCCcCCCCceEEEEeCC
Q 037483 89 VIDDVVDI--KQLEYLVGKREWFGSGSRIIITSRD 121 (693)
Q Consensus 89 vlDdv~~~--~~~~~l~~~~~~~~~~~~iliTtR~ 121 (693)
|+|.+... ..+..+.... ..+.++|+.-=.
T Consensus 284 IIDEasml~~~~~~~Ll~~~---~~~~~lilvGD~ 315 (574)
T 3e1s_A 284 IVDEVSMMGDALMLSLLAAV---PPGARVLLVGDT 315 (574)
T ss_dssp EECCGGGCCHHHHHHHHTTS---CTTCEEEEEECT
T ss_pred EEcCccCCCHHHHHHHHHhC---cCCCEEEEEecc
Confidence 99998543 3455555543 356777766543
No 419
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.82 E-value=0.045 Score=48.79 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=22.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
.+++|+|..|+|||||++.+...+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57999999999999999999886654
No 420
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.74 E-value=0.063 Score=48.82 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=21.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
+++|+|+.|+|||||++.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 589999999999999999998765
No 421
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.74 E-value=0.11 Score=47.79 Aligned_cols=29 Identities=31% Similarity=0.599 Sum_probs=25.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhcccc
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLISHEFE 70 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 70 (693)
+.|+|-|.-|+||||+++.+++.+...++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCC
Confidence 57999999999999999999998865544
No 422
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.73 E-value=0.11 Score=54.31 Aligned_cols=36 Identities=14% Similarity=0.091 Sum_probs=27.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEE
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLV 76 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 76 (693)
..++.|.|.+|+||||+|.+++..+..+-..+.|+.
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 468999999999999999999987654422344443
No 423
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.70 E-value=0.11 Score=50.96 Aligned_cols=28 Identities=25% Similarity=0.248 Sum_probs=24.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
..++++|+|.+|+||||++..++..++.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~ 124 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999987654
No 424
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.69 E-value=0.035 Score=54.52 Aligned_cols=27 Identities=19% Similarity=0.395 Sum_probs=20.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
+..+|+|.|..|+||||+|+.+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356899999999999999999988654
No 425
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.69 E-value=0.1 Score=52.97 Aligned_cols=26 Identities=35% Similarity=0.272 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
..++++|+|++|.|||||++.++...
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45699999999999999999999754
No 426
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=92.64 E-value=0.094 Score=52.41 Aligned_cols=26 Identities=27% Similarity=0.243 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
..++.|+|.+|+|||++|.+++..+.
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~ 132 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQ 132 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHh
Confidence 46899999999999999999987653
No 427
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.64 E-value=0.11 Score=55.48 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=25.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISHEF 69 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 69 (693)
...+|.++|++|.||||+|+++++.+...|
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 467899999999999999999998765444
No 428
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=92.63 E-value=0.1 Score=52.89 Aligned_cols=53 Identities=25% Similarity=0.209 Sum_probs=36.4
Q ss_pred hHHHHHHHHh-cCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhcccceeEEEEcc
Q 037483 25 CLEELRSLMD-EGLNDDVRMIGICGMGGLGKTTLVRAVYDLISHEFEGSSFLVDE 78 (693)
Q Consensus 25 ~~~~l~~~l~-~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~ 78 (693)
-...|..+|. .+-. ..+++.|+|.+|+||||||.+++......-..++|+..+
T Consensus 58 G~~~LD~~Lg~GGl~-~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 58 GSLSLDLALGVGGIP-RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp SCHHHHHHTSSSSEE-TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCHHHHHHhCCCCcc-CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 3455655554 2111 346889999999999999999988765444456777654
No 429
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.61 E-value=0.075 Score=50.56 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=23.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
...|+|.|..|+||||+++.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999988653
No 430
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.47 E-value=0.079 Score=55.78 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=23.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
..++.|.|.+|+||||+|..++..+..
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~ 229 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVAT 229 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999987654
No 431
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.42 E-value=0.08 Score=50.18 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=23.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
...+|+|.|+.|+||||+++.++..+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999998754
No 432
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=92.41 E-value=0.2 Score=51.09 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=25.0
Q ss_pred CCeEEEEEEc-CCCchHHHHHHHHHHHHhcc
Q 037483 39 DDVRMIGICG-MGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 39 ~~~~~v~I~G-~~GiGKTtLa~~~~~~~~~~ 68 (693)
...++|+|+| -||+||||+|..++..++.+
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~ 171 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANM 171 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhC
Confidence 3578888885 99999999999999877653
No 433
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.40 E-value=0.16 Score=47.10 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=24.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
...|+|.|+.|+||||+++.+++.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4789999999999999999999987654
No 434
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.38 E-value=0.063 Score=60.86 Aligned_cols=53 Identities=19% Similarity=0.247 Sum_probs=40.7
Q ss_pred CCCccccchhHHHHHHHHhcCC----------CCCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 16 LKKLVRIDSCLEELRSLMDEGL----------NDDVRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 16 ~~~~vGr~~~~~~l~~~l~~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
-.+++|.++..++|.+.+.... -...+.+.++|++|+|||+||++++......
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~ 538 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCC
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3578899999899888775310 0134568999999999999999999977544
No 435
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.27 E-value=0.048 Score=56.62 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=22.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
...+|.|+|++|+||||+|++++++.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 56899999999999999999987643
No 436
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.09 E-value=0.091 Score=53.37 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=22.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
.+|+|.|+.|+||||||..+++...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 6899999999999999999998653
No 437
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.08 E-value=0.13 Score=53.69 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=24.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
...+++|+|..|+|||||++.++..++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhh
Confidence 4689999999999999999999987653
No 438
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.97 E-value=0.12 Score=49.34 Aligned_cols=24 Identities=25% Similarity=0.207 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDL 64 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~ 64 (693)
..++.|.|.+|+|||++|.+++..
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 468999999999999999998754
No 439
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.96 E-value=0.058 Score=50.97 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=16.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHH-HHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVY-DLI 65 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~-~~~ 65 (693)
..+++|.|+.|+|||||++.++ ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3689999999999999999998 654
No 440
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=91.85 E-value=0.13 Score=48.03 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=25.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
....|+|.|+.|+||||+++.+++.+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 5689999999999999999999987754
No 441
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.81 E-value=0.27 Score=52.55 Aligned_cols=28 Identities=18% Similarity=0.082 Sum_probs=24.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
..++.|.|.+|+||||+|.+++..+..+
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~ 269 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTA 269 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTT
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHh
Confidence 4689999999999999999999877654
No 442
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=91.77 E-value=0.099 Score=48.07 Aligned_cols=25 Identities=16% Similarity=0.157 Sum_probs=22.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
.+|+|.|+.|+||||+|+.+++++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999998763
No 443
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=91.65 E-value=0.049 Score=59.34 Aligned_cols=50 Identities=16% Similarity=0.074 Sum_probs=34.2
Q ss_pred CCCccccchhHHHHHHHHhcCCC--------CCeEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 16 LKKLVRIDSCLEELRSLMDEGLN--------DDVRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 16 ~~~~vGr~~~~~~l~~~l~~~~~--------~~~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
.+.++|.++....+.-.+..+.. .+..-|.++|++|+|||+||+++++..
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred cchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 46789998766666544443210 000148999999999999999998643
No 444
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.59 E-value=0.29 Score=49.14 Aligned_cols=29 Identities=31% Similarity=0.493 Sum_probs=24.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
...+|+|.|.+|+||||++..++......
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~ 83 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIRE 83 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999998766543
No 445
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=91.59 E-value=0.16 Score=46.72 Aligned_cols=27 Identities=33% Similarity=0.447 Sum_probs=22.3
Q ss_pred EEEEEE-cCCCchHHHHHHHHHHHHhcc
Q 037483 42 RMIGIC-GMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 42 ~~v~I~-G~~GiGKTtLa~~~~~~~~~~ 68 (693)
++|+|+ +-||+||||+|..++..+..+
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~ 29 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRS 29 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHC
Confidence 567776 789999999999999877653
No 446
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=91.59 E-value=0.2 Score=50.43 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=23.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
...++.|+|++|+|||||+..++..+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45899999999999999999998765
No 447
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=91.55 E-value=0.16 Score=48.37 Aligned_cols=25 Identities=28% Similarity=0.723 Sum_probs=21.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 44 IGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 44 v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
|+|.|-||+||||+|..++..++..
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~ 27 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASD 27 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHC
Confidence 5569999999999999999887654
No 448
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.47 E-value=0.16 Score=54.50 Aligned_cols=28 Identities=29% Similarity=0.374 Sum_probs=24.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
...+++|.|+.|.|||||++.++..+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 3478999999999999999999987754
No 449
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=91.40 E-value=0.19 Score=50.55 Aligned_cols=27 Identities=33% Similarity=0.471 Sum_probs=24.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
..+++.+.|.||+||||+|..++..++
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~la 43 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQLA 43 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 468999999999999999999998876
No 450
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=91.40 E-value=0.32 Score=46.99 Aligned_cols=45 Identities=20% Similarity=0.185 Sum_probs=31.1
Q ss_pred hhHHHHHHHHhcC-CCCCeEEEEEEcC-CCchHHHHHHHHHHHHhcc
Q 037483 24 SCLEELRSLMDEG-LNDDVRMIGICGM-GGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 24 ~~~~~l~~~l~~~-~~~~~~~v~I~G~-~GiGKTtLa~~~~~~~~~~ 68 (693)
+.+..|..-+... .+...++|.|+|. ||+||||+|..++..++..
T Consensus 64 Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~ 110 (271)
T 3bfv_A 64 EKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQA 110 (271)
T ss_dssp HHHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhC
Confidence 3445555544432 2335688999875 8999999999999877653
No 451
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.38 E-value=0.14 Score=45.24 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYD 63 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~ 63 (693)
...|+|.|.+|+|||||...+..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHhC
Confidence 35689999999999999999875
No 452
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.37 E-value=0.13 Score=45.17 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYD 63 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~ 63 (693)
-+-|.|.|.+|+||||+|.++.+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 36789999999999999999987
No 453
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.34 E-value=0.084 Score=48.79 Aligned_cols=23 Identities=30% Similarity=0.150 Sum_probs=20.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDL 64 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~ 64 (693)
.+++|.|+.|.|||||++.++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999865
No 454
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.32 E-value=0.11 Score=49.24 Aligned_cols=24 Identities=17% Similarity=0.364 Sum_probs=21.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
.+++|.|+.|.|||||.+.++.-+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999998643
No 455
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.28 E-value=0.14 Score=44.83 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=19.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 037483 42 RMIGICGMGGLGKTTLVRAVYD 63 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~ 63 (693)
+.|+|.|.+|+|||||+.++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999876
No 456
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=91.27 E-value=0.19 Score=50.12 Aligned_cols=29 Identities=31% Similarity=0.396 Sum_probs=25.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
..+++.+.|.||+||||+|..++..++..
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~ 43 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKV 43 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTS
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhC
Confidence 46788999999999999999999887654
No 457
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=91.27 E-value=0.19 Score=53.11 Aligned_cols=30 Identities=17% Similarity=0.187 Sum_probs=25.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISHEF 69 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 69 (693)
...+|.++|++|+||||+|+++++.....|
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 457899999999999999999998765444
No 458
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=91.23 E-value=0.18 Score=53.22 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=22.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
.+.|.|.||+|||+++.+++..+...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 89999999999999999998876544
No 459
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=91.22 E-value=0.21 Score=49.89 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=22.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
...++.|+|.+|+|||++|.+++...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999998754
No 460
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=91.19 E-value=0.21 Score=53.57 Aligned_cols=49 Identities=12% Similarity=0.117 Sum_probs=33.2
Q ss_pred CccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 18 KLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 18 ~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
..+.|.+..+.+.+..... .....+|.+.|++|+||||+|+.+.+++..
T Consensus 350 ~~~~r~eV~~~lr~~~~~~-~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 350 EWFTRPEVAEILAETYVPK-HKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp TTTSCHHHHHHHHHHSCCG-GGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHhhccc-cccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 3444444555555544211 124578999999999999999999987643
No 461
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.19 E-value=0.13 Score=48.03 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=21.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
..++|.|++|+||||+|+.+++++
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999998754
No 462
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.18 E-value=0.12 Score=46.93 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDL 64 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~ 64 (693)
..-.|+|.|.+|+|||||++.+...
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3567999999999999999999863
No 463
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=91.18 E-value=0.2 Score=54.04 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=24.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
...+|.|.|++|+||||+|+++.+++..
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence 4578999999999999999999987653
No 464
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=91.13 E-value=0.3 Score=49.28 Aligned_cols=29 Identities=31% Similarity=0.453 Sum_probs=25.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
..+++.+.|.||+||||+|..++..++..
T Consensus 25 ~~~i~v~sgKGGvGKTTvA~~LA~~lA~~ 53 (349)
T 3ug7_A 25 GTKYIMFGGKGGVGKTTMSAATGVYLAEK 53 (349)
T ss_dssp SCEEEEEECSSSTTHHHHHHHHHHHHHHS
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHHC
Confidence 57888899999999999999999877653
No 465
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.13 E-value=0.1 Score=49.39 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDL 64 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~ 64 (693)
..+++|.|+.|.|||||++.++.-
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 368999999999999999998753
No 466
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.11 E-value=0.22 Score=51.36 Aligned_cols=29 Identities=24% Similarity=0.253 Sum_probs=25.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
..++++|+|.+|+||||++..++..++..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 46799999999999999999999877543
No 467
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.09 E-value=0.22 Score=45.46 Aligned_cols=31 Identities=19% Similarity=0.307 Sum_probs=25.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhcccceeE
Q 037483 43 MIGICGMGGLGKTTLVRAVYDLISHEFEGSS 73 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~ 73 (693)
.|+|-|.-|+||||.++.+++.+..+...+.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~ 32 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 4789999999999999999998876543333
No 468
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.03 E-value=0.097 Score=49.09 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=20.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDL 64 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~ 64 (693)
.+++|.|+.|.|||||.+.++.-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998753
No 469
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.02 E-value=0.2 Score=47.26 Aligned_cols=28 Identities=29% Similarity=0.551 Sum_probs=24.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
...|+|.|+.|+||||+++.+++.+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~ 54 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN 54 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4689999999999999999999887543
No 470
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=90.97 E-value=0.18 Score=49.72 Aligned_cols=39 Identities=33% Similarity=0.448 Sum_probs=27.6
Q ss_pred hHHHHHHHHhcCCCCCeEEEEEEc---CCCchHHHHHHHHHHHHhc
Q 037483 25 CLEELRSLMDEGLNDDVRMIGICG---MGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 25 ~~~~l~~~l~~~~~~~~~~v~I~G---~~GiGKTtLa~~~~~~~~~ 67 (693)
.++++.+.+... .++|+|++ -||+||||+|..++..++.
T Consensus 22 ~~~~~~r~~~~~----~~~i~v~~~s~KGGvGKTT~a~nLA~~la~ 63 (298)
T 2oze_A 22 ILEELRRILSNK----NEAIVILNNYFKGGVGKSKLSTMFAYLTDK 63 (298)
T ss_dssp HHHHHHHHHHHH----CSCEEEEECCSSSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC----CcEEEEEeccCCCCchHHHHHHHHHHHHHh
Confidence 445565555532 34566665 9999999999999987664
No 471
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=90.94 E-value=0.15 Score=47.01 Aligned_cols=44 Identities=18% Similarity=0.190 Sum_probs=20.3
Q ss_pred CCccccchhHHHHHHHHhcCCCCCeEEEEEEcCCCchHHHHHHHHHH
Q 037483 17 KKLVRIDSCLEELRSLMDEGLNDDVRMIGICGMGGLGKTTLVRAVYD 63 (693)
Q Consensus 17 ~~~vGr~~~~~~l~~~l~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~ 63 (693)
..--|++...+.+.+..... ..--|+|.|.+|+|||||+..+..
T Consensus 9 ~~~~~~~~~~~~m~~~~~~~---~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 9 HHSSGLVPRGSHMENLYFQG---QAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp ------------------------CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cccCCcccchhHHHhHhhcC---CeEEEEEECcCCCCHHHHHHHHHh
Confidence 34445555566665554432 345689999999999999998875
No 472
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=90.93 E-value=0.17 Score=54.91 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=24.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
...+|.|.|++|+||||+|+++++++.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 568999999999999999999998764
No 473
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=90.88 E-value=0.39 Score=48.11 Aligned_cols=28 Identities=32% Similarity=0.565 Sum_probs=24.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISH 67 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 67 (693)
...+++|.|++|+|||||...+......
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 4689999999999999999999876543
No 474
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.86 E-value=0.1 Score=48.80 Aligned_cols=29 Identities=28% Similarity=0.400 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
....|+|.|+.|+||||+++.+++.+...
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 34689999999999999999999877654
No 475
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.85 E-value=0.11 Score=49.18 Aligned_cols=25 Identities=24% Similarity=0.468 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
..+++|.|+.|.|||||++.++..+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999987543
No 476
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.80 E-value=0.14 Score=50.30 Aligned_cols=25 Identities=16% Similarity=0.335 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
..+++|+|+.|.|||||++.+..-+
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc
Confidence 4689999999999999999998866
No 477
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.79 E-value=0.2 Score=45.18 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYD 63 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~ 63 (693)
....|+|.|.+|+|||||+..+..
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 356799999999999999999875
No 478
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.78 E-value=0.11 Score=47.01 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=19.0
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 037483 43 MIGICGMGGLGKTTLVRAVYD 63 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~ 63 (693)
-|+|.|.+|+|||||+..+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999999875
No 479
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=90.74 E-value=0.35 Score=47.48 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=24.3
Q ss_pred CeEEEEEEcC-CCchHHHHHHHHHHHHhcc
Q 037483 40 DVRMIGICGM-GGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 40 ~~~~v~I~G~-~GiGKTtLa~~~~~~~~~~ 68 (693)
..++|.|+|. ||+||||+|..++..++..
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~ 132 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQS 132 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhC
Confidence 5678888886 8999999999999877653
No 480
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=90.72 E-value=0.12 Score=48.21 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
.+|+|.|+.|+||||+|+.+++.+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 469999999999999999998754
No 481
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=90.67 E-value=0.075 Score=51.34 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=22.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
+...|+|.|..|+||||+|+.+++.+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 56899999999999999999987644
No 482
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.66 E-value=0.16 Score=46.53 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDL 64 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~ 64 (693)
...|+|.|.+|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999999863
No 483
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.63 E-value=0.14 Score=48.92 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=20.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDL 64 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~ 64 (693)
.+++|.|+.|.|||||++.++..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999863
No 484
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.54 E-value=0.12 Score=50.06 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=21.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
.+++|.|+.|.|||||++.++.-+
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 589999999999999999987543
No 485
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=90.52 E-value=0.26 Score=49.13 Aligned_cols=28 Identities=32% Similarity=0.446 Sum_probs=24.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
.+++...|.||+||||+|..++..+++.
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~ 41 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARS 41 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHC
Confidence 6788899999999999999999887654
No 486
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=90.52 E-value=0.2 Score=46.80 Aligned_cols=26 Identities=15% Similarity=0.101 Sum_probs=23.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
..+|+|.|+.|+||||+|+.+++++.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998763
No 487
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.44 E-value=0.12 Score=49.66 Aligned_cols=25 Identities=36% Similarity=0.490 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
..+++|.|+.|.|||||++.++.-+
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999987543
No 488
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.41 E-value=0.15 Score=49.28 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDL 64 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~ 64 (693)
..+++|.|+.|.|||||++.++..
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999864
No 489
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.41 E-value=0.14 Score=48.77 Aligned_cols=25 Identities=24% Similarity=0.378 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
..+++|.|+.|.|||||++.++..+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4789999999999999999987643
No 490
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.38 E-value=0.13 Score=48.84 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDL 64 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~ 64 (693)
..+++|.|+.|.|||||.+.++..
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998754
No 491
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=90.36 E-value=0.29 Score=49.33 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=24.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 037483 40 DVRMIGICGMGGLGKTTLVRAVYDLISHE 68 (693)
Q Consensus 40 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 68 (693)
...+|+|.|.+|+|||||...+.......
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~ 101 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTER 101 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhc
Confidence 47899999999999999999998765443
No 492
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.35 E-value=0.11 Score=48.26 Aligned_cols=23 Identities=30% Similarity=0.641 Sum_probs=20.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDL 64 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~ 64 (693)
.+++|.|+.|.|||||.+.++..
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999998754
No 493
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=90.25 E-value=0.42 Score=49.71 Aligned_cols=26 Identities=35% Similarity=0.539 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
-+.++|.|.+|+|||+|+..+++.+.
T Consensus 165 Gqr~gIfgg~GvGKT~L~~~l~~~~a 190 (498)
T 1fx0_B 165 GGKIGLFGGAGVGKTVLIMELINNIA 190 (498)
T ss_dssp TCCEEEEECSSSSHHHHHHHHHHHTT
T ss_pred CCeEEeecCCCCCchHHHHHHHHHHH
Confidence 35689999999999999999988754
No 494
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.25 E-value=0.13 Score=49.59 Aligned_cols=25 Identities=36% Similarity=0.585 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
..+++|.|+.|.|||||++.++.-+
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3689999999999999999987643
No 495
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.22 E-value=0.13 Score=49.39 Aligned_cols=25 Identities=28% Similarity=0.402 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
..+++|.|+.|.|||||++.++..+
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 4689999999999999999987543
No 496
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.20 E-value=0.14 Score=48.26 Aligned_cols=25 Identities=24% Similarity=0.502 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
..+++|.|+.|.|||||.+.++..+
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999987643
No 497
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.19 E-value=0.13 Score=49.26 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
..+++|.|+.|.|||||.+.++..+
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999987543
No 498
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.17 E-value=0.14 Score=48.86 Aligned_cols=24 Identities=38% Similarity=0.668 Sum_probs=21.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 037483 42 RMIGICGMGGLGKTTLVRAVYDLI 65 (693)
Q Consensus 42 ~~v~I~G~~GiGKTtLa~~~~~~~ 65 (693)
.+++|.|+.|.|||||++.++..+
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999987643
No 499
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=90.17 E-value=0.29 Score=50.65 Aligned_cols=26 Identities=31% Similarity=0.528 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 037483 41 VRMIGICGMGGLGKTTLVRAVYDLIS 66 (693)
Q Consensus 41 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 66 (693)
-+.++|.|.+|+|||+|+..+++.+.
T Consensus 153 GQr~~Ifgg~G~GKT~L~~~i~~~~~ 178 (482)
T 2ck3_D 153 GGKIGLFGGAGVGKTVLIMELINNVA 178 (482)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CCeeeeecCCCCChHHHHHHHHHhhH
Confidence 36789999999999999999988754
No 500
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.15 E-value=0.16 Score=44.51 Aligned_cols=21 Identities=29% Similarity=0.594 Sum_probs=19.2
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 037483 43 MIGICGMGGLGKTTLVRAVYD 63 (693)
Q Consensus 43 ~v~I~G~~GiGKTtLa~~~~~ 63 (693)
-|++.|.+|+|||||+..+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999999876
Done!