Query 037485
Match_columns 358
No_of_seqs 116 out of 427
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 12:47:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037485.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037485hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2592 Tumor differentially e 100.0 2E-108 4E-113 798.7 20.8 350 4-358 14-402 (426)
2 PF03348 Serinc: Serine incorp 100.0 1E-103 3E-108 793.9 29.1 346 8-358 13-406 (429)
3 PF08426 ICE2: ICE2; InterPro 95.7 1 2.2E-05 46.0 18.2 198 22-246 2-225 (412)
4 COG2142 SdhD Succinate dehydro 49.3 85 0.0018 26.8 7.2 94 90-186 4-108 (117)
5 MTH00136 ND3 NADH dehydrogenas 44.3 58 0.0013 27.4 5.4 68 89-159 41-110 (116)
6 PF13334 DUF4094: Domain of un 43.0 25 0.00053 28.9 2.9 22 318-339 6-29 (95)
7 PRK06602 NADH:ubiquinone oxido 41.6 59 0.0013 27.6 5.1 66 92-159 51-116 (121)
8 PRK07756 NADH dehydrogenase su 38.0 79 0.0017 26.9 5.3 68 89-158 49-116 (122)
9 MTH00106 ND3 NADH dehydrogenas 36.6 94 0.002 26.1 5.5 68 89-159 40-109 (115)
10 PF06123 CreD: Inner membrane 34.9 2.5E+02 0.0053 29.3 9.3 59 23-111 298-358 (430)
11 MTH00203 ND3 NADH dehydrogenas 33.2 94 0.002 25.9 5.0 68 89-159 41-108 (112)
12 MTH00042 ND3 NADH dehydrogenas 32.3 1.2E+02 0.0025 25.5 5.4 67 89-158 41-109 (116)
13 PF11241 DUF3043: Protein of u 31.0 98 0.0021 28.2 5.0 55 91-149 68-122 (170)
14 PRK06432 NADH dehydrogenase su 30.1 1.4E+02 0.0031 26.4 5.7 16 144-159 123-138 (144)
15 PRK11715 inner membrane protei 29.4 2.3E+02 0.0051 29.5 8.1 61 23-111 304-364 (436)
16 PRK07928 NADH dehydrogenase su 28.4 1.6E+02 0.0034 25.0 5.6 15 146-160 101-115 (119)
17 MTH00055 ND3 NADH dehydrogenas 28.1 1.1E+02 0.0024 25.8 4.6 13 146-158 100-112 (118)
18 MTH00092 ND3 NADH dehydrogenas 28.1 1.4E+02 0.0031 24.9 5.2 12 148-159 94-105 (111)
19 MTH00012 ND3 NADH dehydrogenas 26.7 1.5E+02 0.0032 25.0 5.1 14 146-159 98-111 (117)
20 MTH00018 ND3 NADH dehydrogenas 26.4 1.3E+02 0.0029 25.1 4.8 14 146-159 95-108 (113)
21 CHL00022 ndhC NADH dehydrogena 26.4 1.8E+02 0.004 24.6 5.7 66 92-160 50-116 (120)
22 MTH00030 ND3 NADH dehydrogenas 21.3 2.3E+02 0.005 24.3 5.3 14 146-159 105-118 (123)
23 MTH00148 ND3 NADH dehydrogenas 20.8 2.5E+02 0.0055 23.5 5.4 14 146-159 98-111 (117)
No 1
>KOG2592 consensus Tumor differentially expressed (TDE) protein [Function unknown]
Probab=100.00 E-value=1.7e-108 Score=798.65 Aligned_cols=350 Identities=28% Similarity=0.570 Sum_probs=315.7
Q ss_pred CcccccccccccCcchhHHHHHHHHHHHHHHHHHHhcccc-cccccCCCcccccCC-CCCCccceehhhhhhhhHHHHHH
Q 037485 4 SAGAIEDCSAEKKRSLRVRYVYGMIFLMYILLAWLVRDYG-QKFLPQLHYVKACGA-GGNNCFRMLGVLRVSLGCFIFFF 81 (358)
Q Consensus 4 ~~~~~~~~~~~~~~s~~tR~~Y~~~fll~~ils~i~~~~~-~~~l~~~~~~~~C~~-~~~~C~G~~aVyRvsfal~~Ff~ 81 (358)
.+-.|+.|..+.+||+.||++|+++++++++++|+|+ ++ +++++|.|+. |+. +.+.|.|+.||||+|||+++||+
T Consensus 14 ~acl~cs~cps~~nst~tRl~ya~~l~l~~~vs~i~~-~~~~~~l~k~p~~--c~~~~c~~~~gy~AVyR~~f~~a~Ff~ 90 (426)
T KOG2592|consen 14 AACLLCSCCPSLTNSTVTRLIYAFILLLGTLVSWIML-PGAEKQLNKLPWF--CEGNDCGKLLGYKAVYRLCFGLACFFL 90 (426)
T ss_pred hHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHhh-hhHHHHHhhCCcc--ccCCCcccchhhhHHHHHHHHHHHHHH
Confidence 3334566667788889999999999999999999999 55 6699999987 652 23456899999999999999999
Q ss_pred HHHHHhcccCCccccchhhcccchhHHHHHHHHHhhheeeccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 037485 82 LMFLSTCSTSKVDEIRSNWHSGYWILKSFLLIASMAVPFFLPSD-YMQIYGELARVGAGIFLLLQLVSVIEFIVWWNKYW 160 (358)
Q Consensus 82 l~~l~~i~v~~s~d~R~~ihnG~W~~K~l~~~~l~i~~FfIP~~-f~~~y~~i~~~gs~~FiliQlIlLvDFa~~wne~w 160 (358)
+++++|+|||++||+|++||||||++|+++|+++.+++|||||+ +...|.+++++||++|||+||||||||||+|||+|
T Consensus 91 ~lsllm~gVkss~D~R~~iqng~W~fK~i~~~~l~i~~FfIP~~~~~~~~~~v~~~Ga~~FILvqLvLLvDFaH~w~e~w 170 (426)
T KOG2592|consen 91 LLSLLMIGVKSSKDPRAAIQNGFWFFKFILWFGLIVGSFFIPNGFFISFWFYVSVFGAALFILVQLVLLVDFAHSWNESW 170 (426)
T ss_pred HHHHHHHhcCcCCCHHHHHHcCcHHHHHHHHHHHHHheEEcCCccchhHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999997 57799999999999999999999999999999999
Q ss_pred ccC-C-CcchhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHhhccccc-----ccccch
Q 037485 161 TPD-D-EKKSCSLGLFMSTIFYVASILGIALMYYLYAPRLACAINIFFITWTAILVLVMMIISLHSLVN-----RGLLSS 233 (358)
Q Consensus 161 ~~~-~-~~~w~~~L~~~t~~~y~~si~~~v~my~~f~~~~~C~lN~~~it~nlil~vi~s~lSl~p~v~-----~gLLqs 233 (358)
++| | ++.||++|+++|+++|.++++++++||++|++++||++||+||++|+++|++++++|+||++| +|||||
T Consensus 171 v~~~Edsr~wy~~Ll~~T~~~Y~~s~~~~~l~fv~ft~~~~C~~nk~fi~~nlilcv~~si~sv~P~VQe~~P~SGLlQS 250 (426)
T KOG2592|consen 171 VEKVEDSRFWYAALLGVTLLMYLLSLVATVLLFVYFTPGDGCGENKFFISVNLILCVAISILSVHPKVQEGQPRSGLLQS 250 (426)
T ss_pred HHHhhchhHHHHHHHHHHHHHHHHHHHHHHHhheEecCCCCCCcceEEEeechHHHHHHHHHhcChhhhcCCCCcccchh
Confidence 999 4 567999999999999999999999999999999999999999999999999999999999987 799999
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCCCccccC-------------CCCchHHHHHHHHHHHHHHhhccccccccccc----
Q 037485 234 GIMASYIVFLCWSALRSEPPYEKCNVQKQVN-------------SNADWTTILSFLIAIGTIVMSTFSTGIDSQSF---- 296 (358)
Q Consensus 234 svv~~Y~~yL~~SAlss~P~~~~Cnp~~~~~-------------~~~~~~~iig~~~~~~~v~ys~~~a~~~~~~~---- 296 (358)
|+|++|+||||||||+||| |++|||...+. ...+.+.++|+++++++++|++.|++++++..
T Consensus 251 svIs~Y~~YLt~SAlss~P-e~~CNP~~~~~~~~t~~~~~~~~~~~~~~~~iiGli~~~lcilYsalR~~s~~~l~k~~~ 329 (426)
T KOG2592|consen 251 SVISLYTMYLTWSALSSEP-ENGCNPWLNSSKNVTITVGPGASVSTFDATNIIGLIFLLLCILYSALRASSRTQLRKLTR 329 (426)
T ss_pred HHHHHHHHHHHHHHHhcCC-ccccChhhhcccccccccCcccccccccccchHHHHHHHHHHHHHHhhcccccccccccc
Confidence 9999999999999999999 99999975432 12345779999999999999999998887653
Q ss_pred --------c--cC--CcccccCCCcccchhHHHHHHHHHHHHHHHHhccCCCCCCCCccccccCceeEEEEeeC
Q 037485 297 --------Q--FR--KDEVQEEDDIPYKYGIFHLIFSLGAMYFAMLFLSWNLLNPAKEWSIDVGWASTWVKILN 358 (358)
Q Consensus 297 --------~--~~--~~~d~e~~~v~Y~YsfFH~if~Las~Y~aMllTnW~~~~~~~~~~~~~gw~s~WVKi~s 358 (358)
. +. |+.|||+|+|.|+|+|||++|+|||+|+||+||||++|+++ .+.++.+|+++||||+|
T Consensus 330 ~~~e~~~l~~~dG~~~~~d~Ek~GV~YsYsfFHfvf~LASlyvmmtLTnW~~~~~~-~~~v~~~w~~vWVKI~s 402 (426)
T KOG2592|consen 330 SNEEEPLLPDEDGGGRANDNEKDGVTYSYSFFHFVFVLASLYVMMTLTNWYTPDED-IWFVKSSWASVWVKIVS 402 (426)
T ss_pred ccccccCccCCCCCcccccccCCCeeEeeeHHHHHHHHHHHHHHHHhccccCCCCc-eeEEeccchHHHHHHHH
Confidence 0 11 23567888999999999999999999999999999999843 37899999999999975
No 2
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=100.00 E-value=1.4e-103 Score=793.91 Aligned_cols=346 Identities=34% Similarity=0.672 Sum_probs=311.4
Q ss_pred ccccccccCcchhHHHHHHHHHHHHHHHHHHhcccc-cc-cccCCCccc--ccCCCCCCccceehhhhhhhhHHHHHHHH
Q 037485 8 IEDCSAEKKRSLRVRYVYGMIFLMYILLAWLVRDYG-QK-FLPQLHYVK--ACGAGGNNCFRMLGVLRVSLGCFIFFFLM 83 (358)
Q Consensus 8 ~~~~~~~~~~s~~tR~~Y~~~fll~~ils~i~~~~~-~~-~l~~~~~~~--~C~~~~~~C~G~~aVyRvsfal~~Ff~l~ 83 (358)
|++|.+..|+|++||++|+++|+++++++|+|++++ .+ +.+++|++. +|+ +++|+|++||||+|||+++||++|
T Consensus 13 c~~c~~~~~~s~~tR~~Ya~~~l~~~i~a~i~~~~~~~~~l~~~~~~~~~~~C~--~~~c~G~~aVyRvsfal~~Ff~l~ 90 (429)
T PF03348_consen 13 CSCCPSCFKSSTSTRIMYALIFLLGTILAWIMLSPGVESKLKKKIPWFCGFDCP--SDSCVGYSAVYRVSFALALFFFLM 90 (429)
T ss_pred HhccCCcCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccCCCCcc--hHHhhhhHHHHHHHHHHHHHHHHH
Confidence 344545559999999999999999999999999855 33 455588773 685 678999999999999999999999
Q ss_pred HHHhcccCCccccchhhcccchhHHHHHHHHHhhheeeccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 037485 84 FLSTCSTSKVDEIRSNWHSGYWILKSFLLIASMAVPFFLPS-DYMQIYGELARVGAGIFLLLQLVSVIEFIVWWNKYWTP 162 (358)
Q Consensus 84 ~l~~i~v~~s~d~R~~ihnG~W~~K~l~~~~l~i~~FfIP~-~f~~~y~~i~~~gs~~FiliQlIlLvDFa~~wne~w~~ 162 (358)
+++|+|||+++|+|+++|||||++|+++|+++++++||||| .|+++|+++|++||++||++|+|+||||||+|||+|++
T Consensus 91 ~l~~i~v~~~~d~Ra~ihng~W~~K~l~l~~l~v~~FfiP~~~f~~~~~~v~~~ga~~FiliQlIlLvDFah~wne~w~~ 170 (429)
T PF03348_consen 91 ALLTIGVKSSRDPRAAIHNGFWFLKFLLLIGLIVGAFFIPNGSFINVYMYVARVGAFIFILIQLILLVDFAHSWNESWVE 170 (429)
T ss_pred HHHHhhcCCCccHHHHHHHhhHHHHHHHHHHHHheeEEeCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999 58999999999999999999999999999999999999
Q ss_pred C-C---CcchhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHhhcccc-----cccccch
Q 037485 163 D-D---EKKSCSLGLFMSTIFYVASILGIALMYYLYAPRLACAINIFFITWTAILVLVMMIISLHSLV-----NRGLLSS 233 (358)
Q Consensus 163 ~-~---~~~w~~~L~~~t~~~y~~si~~~v~my~~f~~~~~C~lN~~~it~nlil~vi~s~lSl~p~v-----~~gLLqs 233 (358)
| | +++|+.+|+++|+++|+++++++++||++|+ ++||.+|++||++|++||++++++|++|++ ++|||||
T Consensus 171 ~~e~~~s~~w~~~Li~~T~~~y~~si~~~v~~y~~f~-~~~C~lN~~fIt~nliL~vi~s~lSv~p~Vqe~~p~sgLLqs 249 (429)
T PF03348_consen 171 KAEEGNSKRWYIALIGVTLLFYAASIAGIVLMYVFFT-PSGCSLNKFFITFNLILCVIISVLSVLPKVQEANPRSGLLQS 249 (429)
T ss_pred ccccccCceehhHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCcccccH
Confidence 9 4 3689999999999999999999999999999 679999999999999999999999999987 5799999
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCCCc-cccCCCCchHHHHHHHHHHHHHHhhccccccccccc-----cc---------
Q 037485 234 GIMASYIVFLCWSALRSEPPYEKCNVQ-KQVNSNADWTTILSFLIAIGTIVMSTFSTGIDSQSF-----QF--------- 298 (358)
Q Consensus 234 svv~~Y~~yL~~SAlss~P~~~~Cnp~-~~~~~~~~~~~iig~~~~~~~v~ys~~~a~~~~~~~-----~~--------- 298 (358)
|+|++|+||||||||+||| |++|||. .++.+..++++++|+++++++++|+++|++++++.. ++
T Consensus 250 svv~~Y~~yL~~SAlss~P-~~~CNp~~~~~~~~~~~~~iig~i~~~~~v~yss~ra~~~s~~~~~~l~~~~~~~~~~~~ 328 (429)
T PF03348_consen 250 SVVSLYTTYLTWSALSSEP-DKECNPSGSRSGSWNTWQSIIGLIFTFVSVLYSSFRASSSSQVGKLQLSSDSEGEQPKCC 328 (429)
T ss_pred HHHHHHHHHHHHHHHHcCC-CcccCCcccccCCcchHHHHHHHHHHHHHHHHhccccccccchhhhhccCccccccCccc
Confidence 9999999999999999999 8999998 555556788889999999999999999998877620 00
Q ss_pred -------------------CCcccccCCCcccchhHHHHHHHHHHHHHHHHhccCCCCCCCCccccccCceeEEEEeeC
Q 037485 299 -------------------RKDEVQEEDDIPYKYGIFHLIFSLGAMYFAMLFLSWNLLNPAKEWSIDVGWASTWVKILN 358 (358)
Q Consensus 299 -------------------~~~~d~e~~~v~Y~YsfFH~if~Las~Y~aMllTnW~~~~~~~~~~~~~gw~s~WVKi~s 358 (358)
++.+|||+++++|||+|||++|+|||||+||++|||++++ ++.+.+++||+++||||+|
T Consensus 329 ~~~~~~~~~~~~~e~~~~~~~~~d~e~~~~~y~y~~FH~vf~las~Y~am~lTnW~~~~-~~~~~~~~~~~~~Wvki~s 406 (429)
T PF03348_consen 329 FNEDRDQADRADVEEGSLPQSVIDDEEDGVSYSYSFFHFVFALASMYVAMLLTNWYSPD-ADFETVGSGWASVWVKIAS 406 (429)
T ss_pred cccccccccccchhccccCcccccccccCCcccHHHHHHHHHHHHHHHHHHhccccCCc-cccccccCCcceehHHHHH
Confidence 0012356677999999999999999999999999999994 4455899999999999975
No 3
>PF08426 ICE2: ICE2; InterPro: IPR013635 ICE2 is a fungal ER protein which has been shown to play an important role in forming/maintaining the cortical ER []. It has also been identified as a protein which is necessary for nuclear inner membrane targeting [].
Probab=95.72 E-value=1 Score=46.03 Aligned_cols=198 Identities=19% Similarity=0.307 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccccCCCcccccCCCCCCccceehhhhhhhhHHHHHHHHHHHhcccCCccccchhhc
Q 037485 22 RYVYGMIFLMYILLAWLVRDYGQKFLPQLHYVKACGAGGNNCFRMLGVLRVSLGCFIFFFLMFLSTCSTSKVDEIRSNWH 101 (358)
Q Consensus 22 R~~Y~~~fll~~ils~i~~~~~~~~l~~~~~~~~C~~~~~~C~G~~aVyRvsfal~~Ff~l~~l~~i~v~~s~d~R~~ih 101 (358)
|...+.+|++..+++.-+- + |-+|.+| | .-.|+.++.||++.+.+-+-.++++-.| +-
T Consensus 2 r~~~s~~~L~~ivlsIPla------------F---dVGG~~c-G----LafSltL~~~Yf~~stl~l~t~~~~~~~--~~ 59 (412)
T PF08426_consen 2 RALLSAFYLLLIVLSIPLA------------F---DVGGRDC-G----LAFSLTLFLFYFILSTLRLATRRTSYFR--LS 59 (412)
T ss_pred hHHHHHHHHHHHHHHhhhh------------h---hccCcch-h----HHHHHHHHHHHHHHHHHHHHhCCccHHH--HH
Confidence 6777777777666653221 1 2245666 2 3467888999999998877766655222 11
Q ss_pred ccchhHHHHHHHHH--hhheeeccc------------------hhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhh
Q 037485 102 SGYWILKSFLLIAS--MAVPFFLPS------------------DYMQIYGELARVGAGIFLLLQL---VSVIEFIVWWNK 158 (358)
Q Consensus 102 nG~W~~K~l~~~~l--~i~~FfIP~------------------~f~~~y~~i~~~gs~~FiliQl---IlLvDFa~~wne 158 (358)
.=.-...-++...+ .....|-.| ...+.|..+=+.-+-+|-+.+- +|+|-=+=+-++
T Consensus 60 s~l~~~Q~~iipsLL~~~L~~fs~~~~~~~~~~~~~~~~~~~~~~v~~W~~~L~~StP~F~llEGf~sLLvIQa~Gq~~r 139 (412)
T PF08426_consen 60 SILYYSQHLIIPSLLIWFLSRFSVDALNTLNSSSWALWYFYYNGLVEPWDFLLRYSTPVFTLLEGFCSLLVIQAAGQTSR 139 (412)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCcccccccccchhhhhhhhchHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhHHHH
Confidence 11111222222222 222333222 2355677777788888888875 466666777766
Q ss_pred ccccC--CCcchhHHHHHHHHHHHHHHHHHHHHhhhhccCC-CCCchhHHHHHHHHHHHHHHHHHhhcccccccccchhH
Q 037485 159 YWTPD--DEKKSCSLGLFMSTIFYVASILGIALMYYLYAPR-LACAINIFFITWTAILVLVMMIISLHSLVNRGLLSSGI 235 (358)
Q Consensus 159 ~w~~~--~~~~w~~~L~~~t~~~y~~si~~~v~my~~f~~~-~~C~lN~~~it~nlil~vi~s~lSl~p~v~~gLLqssv 235 (358)
|+.+ .++.|...++..+...|..++ -++|.-|.-| +-=..+...|++.+-..+.+++.-+. .-|++...||.
T Consensus 140 -WLv~~~rSd~W~I~~Li~Sg~vit~s~---YfLyRIy~fp~~is~~~AtLiG~~lT~~~~L~~~GI~-sgrGn~iESSL 214 (412)
T PF08426_consen 140 -WLVNRGRSDSWMIVSLIASGSVITASL---YFLYRIYVFPWTISNLDATLIGVTLTSVVFLGLYGIV-SGRGNVIESSL 214 (412)
T ss_pred -HHHhcCCCchhHHHHHHHHHHHHHHHH---HHHHHhhccccccCcccHHHHHHHHHHHHHHHHheee-cCCCcHHHHHH
Confidence 7654 467898888877777666665 3455555544 34568999999999999999988887 77899999999
Q ss_pred HHHHHHHHHHH
Q 037485 236 MASYIVFLCWS 246 (358)
Q Consensus 236 v~~Y~~yL~~S 246 (358)
+.+|++|=.|-
T Consensus 215 lFAYiV~cIY~ 225 (412)
T PF08426_consen 215 LFAYIVRCIYQ 225 (412)
T ss_pred HHHHHHHHHHH
Confidence 99998877664
No 4
>COG2142 SdhD Succinate dehydrogenase, hydrophobic anchor subunit [Energy production and conversion]
Probab=49.33 E-value=85 Score=26.78 Aligned_cols=94 Identities=14% Similarity=0.073 Sum_probs=53.7
Q ss_pred cCCccccchhhcccchhHHHHHHHHHhh------heeeccchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhcccc
Q 037485 90 TSKVDEIRSNWHSGYWILKSFLLIASMA------VPFFLPSDYMQIYGELARVGAG-IFLLLQLVSVIEFIVWWNKYWTP 162 (358)
Q Consensus 90 v~~s~d~R~~ihnG~W~~K~l~~~~l~i------~~FfIP~~f~~~y~~i~~~gs~-~FiliQlIlLvDFa~~wne~w~~ 162 (358)
.|.+...|...|| ||....-.++.... ..+..||.....+. +++..- -..+..+.++.-..|.||--|+-
T Consensus 4 ~~~s~~ar~G~~~-~l~qRvTav~Lv~l~~~~l~~~l~~~~~~y~~~~--~~~s~p~~~v~~lL~l~~~l~H~~~Glr~I 80 (117)
T COG2142 4 ARGSGSARYGSHD-WLLQRVTAVILVLLVIWHLYFLLTWLNATYAAWV--AFLANPFWKVFLLLLLVAALIHAWNGLRVI 80 (117)
T ss_pred cccccccccchHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH--HHHhCHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3556677777777 55555433222211 12233555555555 333333 34556778888899999987752
Q ss_pred --C--CCcchhHHHHHHHHHHHHHHHHH
Q 037485 163 --D--DEKKSCSLGLFMSTIFYVASILG 186 (358)
Q Consensus 163 --~--~~~~w~~~L~~~t~~~y~~si~~ 186 (358)
+ ...+++..|...+.+.+.+.++.
T Consensus 81 i~DYi~~~~~r~~l~~~~~~~~v~~~~~ 108 (117)
T COG2142 81 IEDYIKPEKLRLALQILLVLALVLTGVY 108 (117)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 2 35566766666666555554443
No 5
>MTH00136 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=44.25 E-value=58 Score=27.42 Aligned_cols=68 Identities=13% Similarity=0.255 Sum_probs=33.2
Q ss_pred ccCCccccchhhcccchhHHHHHHHHHhhheeeccchhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 037485 89 STSKVDEIRSNWHSGYWILKSFLLIASMAVPFFLPSDYMQIYG--ELARVGAGIFLLLQLVSVIEFIVWWNKY 159 (358)
Q Consensus 89 ~v~~s~d~R~~ihnG~W~~K~l~~~~l~i~~FfIP~~f~~~y~--~i~~~gs~~FiliQlIlLvDFa~~wne~ 159 (358)
|..+.++.|.+++-.|...-++.++-=+=..+..|--+...+. ..+.....+| + +++++-+.|+|++.
T Consensus 41 Gf~p~~~~~~~fsi~FfliallFliFDvEi~~l~P~~~a~~~~~~~~~~~~~~~F--~-~iL~~gl~yew~~G 110 (116)
T MTH00136 41 GFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQLPSPLLTFFWATAV--L-ILLTLGLIYEWLQG 110 (116)
T ss_pred CCCCCCCccccCceehHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHH--H-HHHHHHHHHHHHcC
Confidence 3344455566666666555555444333333444421100011 1112222333 3 78899999999863
No 6
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=42.99 E-value=25 Score=28.87 Aligned_cols=22 Identities=23% Similarity=0.652 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHhcc--CCCCCC
Q 037485 318 LIFSLGAMYFAMLFLS--WNLLNP 339 (358)
Q Consensus 318 ~if~Las~Y~aMllTn--W~~~~~ 339 (358)
++++++|+-..|++|| |..|+.
T Consensus 6 l~Lc~~SF~~G~lft~R~W~~pe~ 29 (95)
T PF13334_consen 6 LLLCIASFCAGMLFTNRMWTVPES 29 (95)
T ss_pred HHHHHHHHHHHHHHhcccccCCcc
Confidence 6899999999999999 977643
No 7
>PRK06602 NADH:ubiquinone oxidoreductase subunit A; Validated
Probab=41.59 E-value=59 Score=27.57 Aligned_cols=66 Identities=15% Similarity=0.439 Sum_probs=31.8
Q ss_pred CccccchhhcccchhHHHHHHHHHhhheeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 037485 92 KVDEIRSNWHSGYWILKSFLLIASMAVPFFLPSDYMQIYGELARVGAGIFLLLQLVSVIEFIVWWNKY 159 (358)
Q Consensus 92 ~s~d~R~~ihnG~W~~K~l~~~~l~i~~FfIP~~f~~~y~~i~~~gs~~FiliQlIlLvDFa~~wne~ 159 (358)
..++.|..++-.|...-++.++-=+=..|..|=. .. +...+..+....+++=+++++-+.|+|++.
T Consensus 51 p~~~~~~~fsi~ffliallFliFDvEi~~l~P~a-~~-~~~~~~~~~~~~~~Fl~iL~~gl~yew~~G 116 (121)
T PRK06602 51 AFGDARMKFDVRFYLVAILFVIFDLEAAFLFPWA-VS-FREIGWLGFVEAMIFILVLLVGLVYLWRKG 116 (121)
T ss_pred CCcccccCCCchHHHHHHHHHHHHHHHHHHHHHH-HH-HccchHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3345555566555555555544434444555511 11 111122222212222267889999999863
No 8
>PRK07756 NADH dehydrogenase subunit A; Validated
Probab=37.95 E-value=79 Score=26.86 Aligned_cols=68 Identities=16% Similarity=0.375 Sum_probs=32.5
Q ss_pred ccCCccccchhhcccchhHHHHHHHHHhhheeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037485 89 STSKVDEIRSNWHSGYWILKSFLLIASMAVPFFLPSDYMQIYGELARVGAGIFLLLQLVSVIEFIVWWNK 158 (358)
Q Consensus 89 ~v~~s~d~R~~ihnG~W~~K~l~~~~l~i~~FfIP~~f~~~y~~i~~~gs~~FiliQlIlLvDFa~~wne 158 (358)
|..+.+|.|.++|=.|...-++.++-=+=..+..|=. ..+...+..+-...+++=.++++-+.|+|++
T Consensus 49 Gf~p~~~~~~~fsi~fyliallFliFDvEiv~l~P~a--~~~~~~~~~~~~~~~~Fl~iL~~gl~yew~~ 116 (122)
T PRK07756 49 GIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWA--VAYDKLGLFALIEMLIFVVMLLVGLAYAWKK 116 (122)
T ss_pred CCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4444455666655555554444444333344555511 1111112222111122226788999999986
No 9
>MTH00106 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=36.59 E-value=94 Score=26.05 Aligned_cols=68 Identities=10% Similarity=0.255 Sum_probs=31.5
Q ss_pred ccCCccccchhhcccchhHHHHHHHHHhhheeeccchhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 037485 89 STSKVDEIRSNWHSGYWILKSFLLIASMAVPFFLPSDYMQIYGEL--ARVGAGIFLLLQLVSVIEFIVWWNKY 159 (358)
Q Consensus 89 ~v~~s~d~R~~ihnG~W~~K~l~~~~l~i~~FfIP~~f~~~y~~i--~~~gs~~FiliQlIlLvDFa~~wne~ 159 (358)
|..+.++.|..+|-.|...-++.++-=+=..+.+|--+-..+... ......+|+ .++++-+.|+|++.
T Consensus 40 Gf~~~~~~~~~fs~~FfliallFliFDvEiv~l~P~~~~~~~~~~~~~~~~~~~Fl---~iL~~gl~yew~~G 109 (115)
T MTH00106 40 GFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTNNLNTMLTMALLLI---SLLALSLAYEWTQK 109 (115)
T ss_pred CCCCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHcC
Confidence 333444556666665555544444333333344552110011111 111122222 57889999999863
No 10
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=34.93 E-value=2.5e+02 Score=29.27 Aligned_cols=59 Identities=24% Similarity=0.501 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHhcccccccccCCC--cccccCCCCCCccceehhhhhhhhHHHHHHHHHHHhcccCCccccchhh
Q 037485 23 YVYGMIFLMYILLAWLVRDYGQKFLPQLH--YVKACGAGGNNCFRMLGVLRVSLGCFIFFFLMFLSTCSTSKVDEIRSNW 100 (358)
Q Consensus 23 ~~Y~~~fll~~ils~i~~~~~~~~l~~~~--~~~~C~~~~~~C~G~~aVyRvsfal~~Ff~l~~l~~i~v~~s~d~R~~i 100 (358)
.-|+++|+.-+.++.++.. .++|.+ .++ | -=|.+|+++||+++.-+. =
T Consensus 298 ~KYgiLFI~LTF~~fflfE----~~~~~~iHpiQ-----------Y---~LVGlAl~lFYlLLLSlS------------E 347 (430)
T PF06123_consen 298 VKYGILFIGLTFLAFFLFE----LLSKLRIHPIQ-----------Y---LLVGLALVLFYLLLLSLS------------E 347 (430)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHhcCcccHHH-----------H---HHHHHHHHHHHHHHHHHH------------h
Confidence 5699999988888888754 333332 221 1 125688999998776543 2
Q ss_pred cccchhHHHHH
Q 037485 101 HSGYWILKSFL 111 (358)
Q Consensus 101 hnG~W~~K~l~ 111 (358)
|=||+..=.+.
T Consensus 348 hi~F~~AYliA 358 (430)
T PF06123_consen 348 HIGFNLAYLIA 358 (430)
T ss_pred hhchHHHHHHH
Confidence 56776655544
No 11
>MTH00203 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=33.20 E-value=94 Score=25.92 Aligned_cols=68 Identities=15% Similarity=0.308 Sum_probs=31.2
Q ss_pred ccCCccccchhhcccchhHHHHHHHHHhhheeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 037485 89 STSKVDEIRSNWHSGYWILKSFLLIASMAVPFFLPSDYMQIYGELARVGAGIFLLLQLVSVIEFIVWWNKY 159 (358)
Q Consensus 89 ~v~~s~d~R~~ihnG~W~~K~l~~~~l~i~~FfIP~~f~~~y~~i~~~gs~~FiliQlIlLvDFa~~wne~ 159 (358)
|..+.++.|..++-.|...-++.++-=+=..+..|=-+...+...+.....+|+ +++++-+.|+|.+.
T Consensus 41 Gf~~~~~~~~~fsi~FfliailFliFDvEi~~l~P~~~~~~~~~~~~~~~~~Fl---~iL~~gl~yew~~G 108 (112)
T MTH00203 41 GFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSNQLSSLSLLLAFLFL---ILLTLGLIYEWLQG 108 (112)
T ss_pred CcCCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH---HHHHHHHHHHHHcC
Confidence 333334555555555554444443322223333442110001112222223333 57889999999874
No 12
>MTH00042 ND3 NADH dehydrogenase subunit 3; Validated
Probab=32.31 E-value=1.2e+02 Score=25.55 Aligned_cols=67 Identities=13% Similarity=0.277 Sum_probs=33.1
Q ss_pred ccCCccccchhhcccchhHHHHHHHHHhhheeeccchhh-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037485 89 STSKVDEIRSNWHSGYWILKSFLLIASMAVPFFLPSDYM-QIY-GELARVGAGIFLLLQLVSVIEFIVWWNK 158 (358)
Q Consensus 89 ~v~~s~d~R~~ihnG~W~~K~l~~~~l~i~~FfIP~~f~-~~y-~~i~~~gs~~FiliQlIlLvDFa~~wne 158 (358)
|....++.|.+++-.|...-++.++-=+=..|..|=-.. ... +..+.....+|+ .++++-+.|+|.+
T Consensus 41 Gf~~~~~~~~~fsi~ffliallFliFDvEi~~l~P~~~~~~~~~~~~~~~~~~~Fl---~iL~~gl~yew~~ 109 (116)
T MTH00042 41 GFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATLITNPSTLLPISLIFL---IILTIGLVYEWVN 109 (116)
T ss_pred CCCCCCccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH---HHHHHHHHHHHHc
Confidence 444445566666666665555554433334444552110 000 111122222333 5888999999976
No 13
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=31.04 E-value=98 Score=28.16 Aligned_cols=55 Identities=22% Similarity=0.241 Sum_probs=33.9
Q ss_pred CCccccchhhcccchhHHHHHHHHHhhheeeccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 037485 91 SKVDEIRSNWHSGYWILKSFLLIASMAVPFFLPSDYMQIYGELARVGAGIFLLLQLVSV 149 (358)
Q Consensus 91 ~~s~d~R~~ihnG~W~~K~l~~~~l~i~~FfIP~~f~~~y~~i~~~gs~~FiliQlIlL 149 (358)
+|--|.|-.+-+=|.++-++++++.++ .|+..++.|..+++.+-++.+++..++|
T Consensus 68 RD~VDsR~~i~e~fmP~alv~lv~~~v----~~~~~~~~~~~~~~~~~~~~~iid~~~l 122 (170)
T PF11241_consen 68 RDYVDSRRNIGEFFMPVALVLLVLSFV----VPSPQVQLYVTLAMYVLLLLVIIDGVIL 122 (170)
T ss_pred hhhhhcccchHHHHHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444466666666566666666555555 5666666677666666666666666554
No 14
>PRK06432 NADH dehydrogenase subunit A; Validated
Probab=30.12 E-value=1.4e+02 Score=26.40 Aligned_cols=16 Identities=0% Similarity=-0.045 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhhhc
Q 037485 144 LQLVSVIEFIVWWNKY 159 (358)
Q Consensus 144 iQlIlLvDFa~~wne~ 159 (358)
+=+++++-+.|+|++.
T Consensus 123 Fl~iL~lGLiYEWkkG 138 (144)
T PRK06432 123 FLAMPLFAVYYAFKMG 138 (144)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 3356889999999874
No 15
>PRK11715 inner membrane protein; Provisional
Probab=29.44 E-value=2.3e+02 Score=29.50 Aligned_cols=61 Identities=20% Similarity=0.403 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHhcccccccccCCCcccccCCCCCCccceehhhhhhhhHHHHHHHHHHHhcccCCccccchhhcc
Q 037485 23 YVYGMIFLMYILLAWLVRDYGQKFLPQLHYVKACGAGGNNCFRMLGVLRVSLGCFIFFFLMFLSTCSTSKVDEIRSNWHS 102 (358)
Q Consensus 23 ~~Y~~~fll~~ils~i~~~~~~~~l~~~~~~~~C~~~~~~C~G~~aVyRvsfal~~Ff~l~~l~~i~v~~s~d~R~~ihn 102 (358)
+-|+++|+.-+.++.++-. .+++.+-- =+-| -=|.+|+++||+++.-+. =|=
T Consensus 304 ~KYgiLFI~LTF~~fFlfE----~~~~~~iH---------piQY---lLVGlAl~lFYLLLLSlS------------EHi 355 (436)
T PRK11715 304 VKYAILFIALTFAAFFLFE----LLKKLRIH---------PVQY---LLVGLALVLFYLLLLSLS------------EHI 355 (436)
T ss_pred HhHHHHHHHHHHHHHHHHH----HhcCceec---------HHHH---HHHHHHHHHHHHHHHHHH------------hhh
Confidence 5699999988888888754 44443310 0011 125678999998776544 256
Q ss_pred cchhHHHHH
Q 037485 103 GYWILKSFL 111 (358)
Q Consensus 103 G~W~~K~l~ 111 (358)
||+..=.+.
T Consensus 356 gF~~AYliA 364 (436)
T PRK11715 356 GFTLAYLIA 364 (436)
T ss_pred chHHHHHHH
Confidence 776655544
No 16
>PRK07928 NADH dehydrogenase subunit A; Validated
Probab=28.40 E-value=1.6e+02 Score=24.96 Aligned_cols=15 Identities=13% Similarity=0.357 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhhhcc
Q 037485 146 LVSVIEFIVWWNKYW 160 (358)
Q Consensus 146 lIlLvDFa~~wne~w 160 (358)
+++++-+.|+|.+.-
T Consensus 101 ~iL~~Gl~yew~~G~ 115 (119)
T PRK07928 101 LTVFVAYAYVWRRGG 115 (119)
T ss_pred HHHHHHHHHHHHcCc
Confidence 578899999998743
No 17
>MTH00055 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=28.13 E-value=1.1e+02 Score=25.79 Aligned_cols=13 Identities=31% Similarity=0.585 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhhh
Q 037485 146 LVSVIEFIVWWNK 158 (358)
Q Consensus 146 lIlLvDFa~~wne 158 (358)
+++++-+.|+|.+
T Consensus 100 ~iL~~gl~yew~~ 112 (118)
T MTH00055 100 IILTIGLIYEWVK 112 (118)
T ss_pred HHHHHHHHHHHHc
Confidence 5788999999986
No 18
>MTH00092 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=28.09 E-value=1.4e+02 Score=24.86 Aligned_cols=12 Identities=17% Similarity=0.186 Sum_probs=10.3
Q ss_pred HHHHHHHHhhhc
Q 037485 148 SVIEFIVWWNKY 159 (358)
Q Consensus 148 lLvDFa~~wne~ 159 (358)
+++-+.|+|++.
T Consensus 94 L~~Gl~yew~~G 105 (111)
T MTH00092 94 IFFGFYMEWWYG 105 (111)
T ss_pred HHHHHHHHHHcC
Confidence 789999999873
No 19
>MTH00012 ND3 NADH dehydrogenase subunit 3; Validated
Probab=26.71 E-value=1.5e+02 Score=25.01 Aligned_cols=14 Identities=36% Similarity=0.548 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhhhc
Q 037485 146 LVSVIEFIVWWNKY 159 (358)
Q Consensus 146 lIlLvDFa~~wne~ 159 (358)
+++++-+.|+|.+.
T Consensus 98 ~iL~lgl~yew~~G 111 (117)
T MTH00012 98 LILVIGLIHEWREG 111 (117)
T ss_pred HHHHHHHHHHHHcC
Confidence 57889999999864
No 20
>MTH00018 ND3 NADH dehydrogenase subunit 3; Validated
Probab=26.42 E-value=1.3e+02 Score=25.06 Aligned_cols=14 Identities=21% Similarity=0.387 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhhhc
Q 037485 146 LVSVIEFIVWWNKY 159 (358)
Q Consensus 146 lIlLvDFa~~wne~ 159 (358)
+++++-+.|+|.+.
T Consensus 95 ~iL~~gl~yew~~g 108 (113)
T MTH00018 95 FILTLGLIYEWIKG 108 (113)
T ss_pred HHHHHHHHHHHHcC
Confidence 57889999999863
No 21
>CHL00022 ndhC NADH dehydrogenase subunit 3
Probab=26.40 E-value=1.8e+02 Score=24.56 Aligned_cols=66 Identities=17% Similarity=0.377 Sum_probs=30.8
Q ss_pred CccccchhhcccchhHHHHHHHHHhhheeeccchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 037485 92 KVDEIRSNWHSGYWILKSFLLIASMAVPFFLPSDY-MQIYGELARVGAGIFLLLQLVSVIEFIVWWNKYW 160 (358)
Q Consensus 92 ~s~d~R~~ihnG~W~~K~l~~~~l~i~~FfIP~~f-~~~y~~i~~~gs~~FiliQlIlLvDFa~~wne~w 160 (358)
..++.|..++-.|...-++.++-=+=..+..|=.. ....+..+.....+|+ +++++-+.|+|.+.-
T Consensus 50 p~~~~~~~fsv~FfliallFliFDvEii~l~P~~~~~~~~~~~~~~~~~~Fl---~iL~~gl~yew~~G~ 116 (120)
T CHL00022 50 PMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSAFIEALIFV---LILIVGLVYAWRKGA 116 (120)
T ss_pred CCCCCCCccceeHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---HHHHHHHHHHHHhCc
Confidence 33455565555555444444433223334445111 1111112222122333 678899999998743
No 22
>MTH00030 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=21.30 E-value=2.3e+02 Score=24.27 Aligned_cols=14 Identities=29% Similarity=0.330 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhhhc
Q 037485 146 LVSVIEFIVWWNKY 159 (358)
Q Consensus 146 lIlLvDFa~~wne~ 159 (358)
+++++-+.|+|.+.
T Consensus 105 ~iL~~Gl~yEw~~G 118 (123)
T MTH00030 105 IVLAIGLAYEWIKG 118 (123)
T ss_pred HHHHHHHHHHHHhC
Confidence 67888999999863
No 23
>MTH00148 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=20.79 E-value=2.5e+02 Score=23.53 Aligned_cols=14 Identities=21% Similarity=0.525 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhhhc
Q 037485 146 LVSVIEFIVWWNKY 159 (358)
Q Consensus 146 lIlLvDFa~~wne~ 159 (358)
.++++-+.|+|.+.
T Consensus 98 ~iL~~gl~yew~~G 111 (117)
T MTH00148 98 LILILGLFHEWNEG 111 (117)
T ss_pred HHHHHHHHHHHHcC
Confidence 67889999999874
Done!