Query 037485
Match_columns 358
No_of_seqs 116 out of 427
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 22:08:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037485.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037485hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rko_A NADH-quinone oxidoreduc 51.5 8.8 0.0003 32.7 2.8 22 142-163 104-128 (147)
2 3j1r_A Archaeal adhesion filam 46.5 24 0.00082 21.2 3.3 22 173-194 4-25 (26)
3 2lx0_A Membrane fusion protein 13.8 51 0.0017 20.2 0.5 10 101-110 20-29 (32)
4 4b4a_A TATC, SEC-independent p 12.6 4.8E+02 0.016 23.6 7.1 121 123-252 57-204 (249)
5 3rlb_A THIT; S-component, ECF 8.4 6.7E+02 0.023 21.7 6.2 53 170-222 122-180 (192)
6 3ixz_A Potassium-transporting 7.3 6.9E+02 0.023 27.1 6.9 25 100-124 960-984 (1034)
7 1vf5_F Protein PET M; photosyn 4.6 7.6E+02 0.026 15.7 3.3 24 203-227 7-30 (35)
8 2rod_B NOXA, noxaa; MCL-1, apo 4.3 2.7E+02 0.0091 16.4 0.7 7 241-247 18-24 (27)
9 4a01_A Proton pyrophosphatase; 3.6 2.6E+03 0.088 22.2 8.0 36 90-125 351-387 (766)
10 2zxe_A Na, K-ATPase alpha subu 3.4 8.9E+02 0.03 26.2 4.6 14 110-123 964-977 (1028)
No 1
>3rko_A NADH-quinone oxidoreductase subunit A; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=51.47 E-value=8.8 Score=32.75 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHhhhc---cccC
Q 037485 142 LLLQLVSVIEFIVWWNKY---WTPD 163 (358)
Q Consensus 142 iliQlIlLvDFa~~wne~---w~~~ 163 (358)
+++=+|+++-+.|+|++. |.++
T Consensus 104 ~~Fl~iL~~Gl~yEW~~GaL~W~~~ 128 (147)
T 3rko_A 104 AIFIFVLLAGLVYLVRIGALDWTPA 128 (147)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSCC--
T ss_pred HHHHHHHHHHHHHHHHcCCeEeccC
Confidence 344467889999999985 6544
No 2
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=46.46 E-value=24 Score=21.24 Aligned_cols=22 Identities=9% Similarity=0.321 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc
Q 037485 173 LFMSTIFYVASILGIALMYYLY 194 (358)
Q Consensus 173 ~~~t~~~y~~si~~~v~my~~f 194 (358)
+..++++...++++.++.|.|+
T Consensus 4 iVA~~lLIviav~aaVllylW~ 25 (26)
T 3j1r_A 4 VIATLLLILIAVAAAVLLYTWV 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3467788899999999999997
No 3
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=13.82 E-value=51 Score=20.23 Aligned_cols=10 Identities=30% Similarity=1.012 Sum_probs=7.8
Q ss_pred cccchhHHHH
Q 037485 101 HSGYWILKSF 110 (358)
Q Consensus 101 hnG~W~~K~l 110 (358)
.-|||.+|++
T Consensus 20 afgfwlfkyl 29 (32)
T 2lx0_A 20 AFGFWLFKYL 29 (32)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4589999975
No 4
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=12.59 E-value=4.8e+02 Score=23.55 Aligned_cols=121 Identities=18% Similarity=0.237 Sum_probs=64.6
Q ss_pred cchhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhccccCCCcchhHHHHHHHHHHHHHHHHHHH-H----hhhh
Q 037485 123 PSDYMQIYGELARVGAGI----FLLLQLVSVIEFIVWWNKYWTPDDEKKSCSLGLFMSTIFYVASILGIA-L----MYYL 193 (358)
Q Consensus 123 P~~f~~~y~~i~~~gs~~----FiliQlIlLvDFa~~wne~w~~~~~~~w~~~L~~~t~~~y~~si~~~v-~----my~~ 193 (358)
|.+-+..+.+++.+.|.+ +++.|+...+- -.+ .++++|+....+..+.+++.++++..- + .+.+
T Consensus 57 ~~e~f~~~lkvs~~~g~~~a~P~ilyQiw~Fi~------PgL-y~~Err~~~~~~~~s~~LF~~G~~f~Yf~v~P~~~~F 129 (249)
T 4b4a_A 57 PTEPLFILIKISLAVGFIIASPVILYQFWRFIE------PAL-YSHEKRAFIPLLLGSILLFMLGALFAYFIVLPLALKF 129 (249)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TTT-SCCCTTTTHHHHHHHHHHHHHHHHHHHHTHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------ccc-cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677888877776664 78888833320 111 113456666666665555544443321 1 2333
Q ss_pred ---ccCCC-C--C--chhHHHHHHHHHHHHHHHHHhhcccc-----cccccchhHHHH-----HHHHHHHHHhhcCC
Q 037485 194 ---YAPRL-A--C--AINIFFITWTAILVLVMMIISLHSLV-----NRGLLSSGIMAS-----YIVFLCWSALRSEP 252 (358)
Q Consensus 194 ---f~~~~-~--C--~lN~~~it~nlil~vi~s~lSl~p~v-----~~gLLqssvv~~-----Y~~yL~~SAlss~P 252 (358)
|++.+ . = +.|. .+++.+-+.+...+.--.|-+ +-|++++....- |..-+..+|+.+ |
T Consensus 130 l~~~~~~~i~~~~~~~i~~-Yl~fv~~l~l~fGl~FelPvi~~~L~~~Giv~~~~l~~~Rr~~iv~~~v~aAiiT-P 204 (249)
T 4b4a_A 130 LLGLGFTQLLATPYLSVDM-YISFVLKLVVAFGIAFEMPIVLYVLQKAGVITPEQLASFRKYFIVIAFVIGAIIA-P 204 (249)
T ss_dssp TTCSSSTTSSSSTTEEHHH-HHHHHHHHHHHHHHHTSHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHC-S
T ss_pred HHhcchhhhHhhHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHhHHHHHHHHHHHHHHC-C
Confidence 33321 1 1 3444 334444444444555556633 468888777653 566667788777 6
No 5
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=8.43 E-value=6.7e+02 Score=21.70 Aligned_cols=53 Identities=21% Similarity=0.167 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCCC------CCchhHHHHHHHHHHHHHHHHHhh
Q 037485 170 SLGLFMSTIFYVASILGIALMYYLYAPRL------ACAINIFFITWTAILVLVMMIISL 222 (358)
Q Consensus 170 ~~L~~~t~~~y~~si~~~v~my~~f~~~~------~C~lN~~~it~nlil~vi~s~lSl 222 (358)
.+.+..+++.|......-+++|--|+|.+ +-..|..++..+.++|.++..+-.
T Consensus 122 lg~~ig~~~r~~~~~isgvvff~~yaP~g~~~~~ySl~~N~~~~l~~~ii~~iv~~lL~ 180 (192)
T 3rlb_A 122 LGTFVAVLLKYFFHFIAGIIFWSQYAWKGWGAVAYSLAVNGISGILTAIAAFVILIIFV 180 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666778888888888778888898762 124667677777777776665533
No 6
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=7.28 E-value=6.9e+02 Score=27.11 Aligned_cols=25 Identities=4% Similarity=0.192 Sum_probs=15.3
Q ss_pred hcccchhHHHHHHHHHhhheeeccc
Q 037485 100 WHSGYWILKSFLLIASMAVPFFLPS 124 (358)
Q Consensus 100 ihnG~W~~K~l~~~~l~i~~FfIP~ 124 (358)
+.|-++..-+++-+++.+...++|.
T Consensus 960 ~~N~~l~~~~~~~~~l~~~~~~~p~ 984 (1034)
T 3ixz_A 960 FRNRILVIAIVFQVCIGCFLCYCPG 984 (1034)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhh
Confidence 4565555555556666666667783
No 7
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=4.63 E-value=7.6e+02 Score=15.72 Aligned_cols=24 Identities=13% Similarity=0.073 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhccccc
Q 037485 203 NIFFITWTAILVLVMMIISLHSLVN 227 (358)
Q Consensus 203 N~~~it~nlil~vi~s~lSl~p~v~ 227 (358)
|.+.|.+.++|.-+.-..-++ |+|
T Consensus 7 ~~A~i~~~LvLvGla~Gf~LL-kiq 30 (35)
T 1vf5_F 7 YAALLSFGLIFVGWGLGVLLL-KIQ 30 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HTT
T ss_pred HHHHHHHHHHHHHHHHHHHhh-eee
Confidence 455555555554333333333 444
No 8
>2rod_B NOXA, noxaa; MCL-1, apoptosis, BH3-only, BCL-2, cytoplasm, developmental protein, differentiation, membrane, mitochondrion, nucleus, phosphoprotein; NMR {Mus musculus}
Probab=4.28 E-value=2.7e+02 Score=16.41 Aligned_cols=7 Identities=57% Similarity=1.203 Sum_probs=4.0
Q ss_pred HHHHHHH
Q 037485 241 VFLCWSA 247 (358)
Q Consensus 241 ~yL~~SA 247 (358)
+|-||||
T Consensus 18 vyctwsa 24 (27)
T 2rod_B 18 VYCTWSA 24 (27)
T ss_dssp HHHHHHS
T ss_pred eEEeecC
Confidence 4556665
No 9
>4a01_A Proton pyrophosphatase; hydrolase, membrane protein, proton pumping; HET: DMU; 2.35A {Vigna radiata}
Probab=3.56 E-value=2.6e+03 Score=22.17 Aligned_cols=36 Identities=25% Similarity=0.366 Sum_probs=27.9
Q ss_pred cCCccccchhhcccchhHHHHHHHHHhhheee-ccch
Q 037485 90 TSKVDEIRSNWHSGYWILKSFLLIASMAVPFF-LPSD 125 (358)
Q Consensus 90 v~~s~d~R~~ihnG~W~~K~l~~~~l~i~~Ff-IP~~ 125 (358)
.++.+|+.+.+++|.|.--++..++..+.+++ +|+.
T Consensus 351 ~~~~~~~~~aL~~g~~~s~il~~v~~~~~~~~~l~~~ 387 (766)
T 4a01_A 351 IKAVKEIEPALKKQLVISTVLMTIGVAVVSFVALPTS 387 (766)
T ss_dssp CCSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 44556788899999999988888887777665 5754
No 10
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A
Probab=3.44 E-value=8.9e+02 Score=26.21 Aligned_cols=14 Identities=29% Similarity=0.216 Sum_probs=6.5
Q ss_pred HHHHHHhhheeecc
Q 037485 110 FLLIASMAVPFFLP 123 (358)
Q Consensus 110 l~~~~l~i~~FfIP 123 (358)
++-+++.+...++|
T Consensus 964 ~~~~~l~~~~~~~p 977 (1028)
T 2zxe_A 964 FEETALAAFLSYCP 977 (1028)
T ss_dssp HHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhh
Confidence 33344444445566
Done!