BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037487
(151 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QQQ|A Chain A, Crystal Structure Of Non-Symbiotic Plant Hemoglobin From
Trema Tomentosa
pdb|3QQQ|B Chain B, Crystal Structure Of Non-Symbiotic Plant Hemoglobin From
Trema Tomentosa
Length = 168
Score = 149 bits (375), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 77/141 (54%), Positives = 102/141 (72%), Gaps = 4/141 (2%)
Query: 2 VFTEKQEALVNESWEILKEISHKIAC---VSSPQIAPAAKGMFSFLRDSDGIPQNNPKLK 58
VFTE+QEALV +SW ++K+ S ++ + +IAP+AK +FS+L+DS + NPKLK
Sbjct: 15 VFTEEQEALVVKSWAVMKKNSAELGLKFFLKIFEIAPSAKNLFSYLKDSPIPLEQNPKLK 74
Query: 59 AHAVKVFKMTCESAIQLREKGKVTVADTTLKYLGSVHLKNGVLDPHFEVVKEALLRAIKE 118
HA+ VF MTCESA+QLR+ GKVTV ++ LK LG++H KNGV++ HFEV + ALL IKE
Sbjct: 75 PHAMTVFVMTCESAVQLRKAGKVTVRESNLKRLGAIHFKNGVVNEHFEVTRFALLETIKE 134
Query: 119 AVGEKWR-DMNCTWVEAYDQL 138
AV E W +M W EAYDQL
Sbjct: 135 AVPEMWSPEMKNAWGEAYDQL 155
>pdb|2GNV|A Chain A, Crystal Structure Of Non-Symbiotic Plant Hemoglobin From
Rice, B10 Mutant F40l
pdb|2GNV|B Chain B, Crystal Structure Of Non-Symbiotic Plant Hemoglobin From
Rice, B10 Mutant F40l
Length = 165
Score = 145 bits (367), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 82/141 (58%), Positives = 97/141 (68%), Gaps = 5/141 (3%)
Query: 3 FTEKQEALVNESWEILKEISHKIAC---VSSPQIAPAAKGMFSFLRDSDGIPQNNPKLKA 59
F+E+QEALV +SW ILK+ S IA + ++AP+A MFSFLR+SD + NPKLK
Sbjct: 13 FSEEQEALVLKSWAILKKDSANIALRFLLKIFEVAPSASQMFSFLRNSDVPLEKNPKLKT 72
Query: 60 HAVKVFKMTCESAIQLREKGKVTVADTTLKYLGSVHLKNGVLDPHFEVVKEALLRAIKEA 119
HA+ VF MTCE+A QLR+ GKVTV DTTLK LG+ HLK GV D HFEVVK ALL IKE
Sbjct: 73 HAMSVFVMTCEAAAQLRKAGKVTVRDTTLKRLGATHLKYGVGDAHFEVVKFALLDTIKEE 132
Query: 120 V-GEKWRD-MNCTWVEAYDQL 138
V + W M W EAYD L
Sbjct: 133 VPADMWSPAMKSAWSEAYDHL 153
>pdb|1D8U|A Chain A, Crystal Structure Of Non-Symbiotic Plant Hemoglobin From
Rice
pdb|1D8U|B Chain B, Crystal Structure Of Non-Symbiotic Plant Hemoglobin From
Rice
Length = 166
Score = 145 bits (366), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 82/141 (58%), Positives = 97/141 (68%), Gaps = 5/141 (3%)
Query: 3 FTEKQEALVNESWEILKEISHKIAC---VSSPQIAPAAKGMFSFLRDSDGIPQNNPKLKA 59
F+E+QEALV +SW ILK+ S IA + ++AP+A MFSFLR+SD + NPKLK
Sbjct: 14 FSEEQEALVLKSWAILKKDSANIALRFFLKIFEVAPSASQMFSFLRNSDVPLEKNPKLKT 73
Query: 60 HAVKVFKMTCESAIQLREKGKVTVADTTLKYLGSVHLKNGVLDPHFEVVKEALLRAIKEA 119
HA+ VF MTCE+A QLR+ GKVTV DTTLK LG+ HLK GV D HFEVVK ALL IKE
Sbjct: 74 HAMSVFVMTCEAAAQLRKAGKVTVRDTTLKRLGATHLKYGVGDAHFEVVKFALLDTIKEE 133
Query: 120 V-GEKWRD-MNCTWVEAYDQL 138
V + W M W EAYD L
Sbjct: 134 VPADMWSPAMKSAWSEAYDHL 154
>pdb|2GNW|A Chain A, Crystal Structure Of Non-Symbiotic Plant Hemoglobin From
Rice, B10 Mutant F40w
pdb|2GNW|B Chain B, Crystal Structure Of Non-Symbiotic Plant Hemoglobin From
Rice, B10 Mutant F40w
Length = 165
Score = 145 bits (365), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 82/141 (58%), Positives = 97/141 (68%), Gaps = 5/141 (3%)
Query: 3 FTEKQEALVNESWEILKEISHKIAC---VSSPQIAPAAKGMFSFLRDSDGIPQNNPKLKA 59
F+E+QEALV +SW ILK+ S IA + ++AP+A MFSFLR+SD + NPKLK
Sbjct: 13 FSEEQEALVLKSWAILKKDSANIALRFWLKIFEVAPSASQMFSFLRNSDVPLEKNPKLKT 72
Query: 60 HAVKVFKMTCESAIQLREKGKVTVADTTLKYLGSVHLKNGVLDPHFEVVKEALLRAIKEA 119
HA+ VF MTCE+A QLR+ GKVTV DTTLK LG+ HLK GV D HFEVVK ALL IKE
Sbjct: 73 HAMSVFVMTCEAAAQLRKAGKVTVRDTTLKRLGATHLKYGVGDAHFEVVKFALLDTIKEE 132
Query: 120 V-GEKWRD-MNCTWVEAYDQL 138
V + W M W EAYD L
Sbjct: 133 VPADMWSPAMKSAWSEAYDHL 153
>pdb|2OIF|A Chain A, The Crystal Structure Of Ferric Cyanide Bound Barley
Hexacoordinate Hemoglobin.
pdb|2OIF|B Chain B, The Crystal Structure Of Ferric Cyanide Bound Barley
Hexacoordinate Hemoglobin.
pdb|2OIF|C Chain C, The Crystal Structure Of Ferric Cyanide Bound Barley
Hexacoordinate Hemoglobin.
pdb|2OIF|D Chain D, The Crystal Structure Of Ferric Cyanide Bound Barley
Hexacoordinate Hemoglobin.
pdb|2OIF|E Chain E, The Crystal Structure Of Ferric Cyanide Bound Barley
Hexacoordinate Hemoglobin.
pdb|2OIF|F Chain F, The Crystal Structure Of Ferric Cyanide Bound Barley
Hexacoordinate Hemoglobin.
pdb|2OIF|G Chain G, The Crystal Structure Of Ferric Cyanide Bound Barley
Hexacoordinate Hemoglobin.
pdb|2OIF|H Chain H, The Crystal Structure Of Ferric Cyanide Bound Barley
Hexacoordinate Hemoglobin
Length = 162
Score = 142 bits (359), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 78/143 (54%), Positives = 99/143 (69%), Gaps = 5/143 (3%)
Query: 1 MVFTEKQEALVNESWEILKEISHKIAC---VSSPQIAPAAKGMFSFLRDSDGIPQNNPKL 57
+VF+E++EALV +SW I+K+ S + + +IAP+A+ MF FLRDSD + NPKL
Sbjct: 8 VVFSEEKEALVLKSWAIMKKDSANLGLRFFLKIFEIAPSARQMFPFLRDSDVPLETNPKL 67
Query: 58 KAHAVKVFKMTCESAIQLREKGKVTVADTTLKYLGSVHLKNGVLDPHFEVVKEALLRAIK 117
K HAV VF MTCE+A QLR+ GK+TV +TTLK LG HLK GV D HFEV + ALL IK
Sbjct: 68 KTHAVSVFVMTCEAAAQLRKAGKITVRETTLKRLGGTHLKYGVADGHFEVTRFALLETIK 127
Query: 118 EAV-GEKWR-DMNCTWVEAYDQL 138
EA+ + W +M W EAYDQL
Sbjct: 128 EALPADMWGPEMRNAWGEAYDQL 150
>pdb|2R50|A Chain A, The Crystal Structure Of Nonsymbiotic Corn Hemoglobin 1
pdb|2R50|B Chain B, The Crystal Structure Of Nonsymbiotic Corn Hemoglobin 1
pdb|2R50|C Chain C, The Crystal Structure Of Nonsymbiotic Corn Hemoglobin 1
pdb|2R50|D Chain D, The Crystal Structure Of Nonsymbiotic Corn Hemoglobin 1
Length = 165
Score = 141 bits (355), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/143 (53%), Positives = 98/143 (68%), Gaps = 5/143 (3%)
Query: 1 MVFTEKQEALVNESWEILKEISHKIAC---VSSPQIAPAAKGMFSFLRDSDGIPQNNPKL 57
+VF E+QEALV +SW ++K+ + + + +IAP+AK MFSFLRDSD + NPKL
Sbjct: 11 VVFGEEQEALVLKSWAVMKKDAANLGLRFFLKVFEIAPSAKQMFSFLRDSDVPLEKNPKL 70
Query: 58 KAHAVKVFKMTCESAIQLREKGKVTVADTTLKYLGSVHLKNGVLDPHFEVVKEALLRAIK 117
K HA+ VF MTCE+A QLR+ GKVTV +TTLK LG+ HL+ GV D HFEV ALL IK
Sbjct: 71 KTHAMSVFVMTCEAAAQLRKAGKVTVRETTLKRLGATHLRYGVADGHFEVTGFALLETIK 130
Query: 118 EAV-GEKWR-DMNCTWVEAYDQL 138
EA+ + W +M W EAY QL
Sbjct: 131 EALPADMWSLEMKKAWAEAYSQL 153
>pdb|3QQR|A Chain A, Crystal Structure Of Parasponia Hemoglobin; Differential
Heme Coordination Is Linked To Quaternary Structure
pdb|3QQR|B Chain B, Crystal Structure Of Parasponia Hemoglobin; Differential
Heme Coordination Is Linked To Quaternary Structure
Length = 162
Score = 140 bits (354), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/141 (51%), Positives = 99/141 (70%), Gaps = 4/141 (2%)
Query: 2 VFTEKQEALVNESWEILKEISHKIAC---VSSPQIAPAAKGMFSFLRDSDGIPQNNPKLK 58
VFTE+QEALV ++W ++K+ S ++ + +IAP+AK +FS+L+DS + NPKLK
Sbjct: 9 VFTEEQEALVVKAWAVMKKNSAELGLQFFLKIFEIAPSAKNLFSYLKDSPVPLEQNPKLK 68
Query: 59 AHAVKVFKMTCESAIQLREKGKVTVADTTLKYLGSVHLKNGVLDPHFEVVKEALLRAIKE 118
HA VF MTCESA+QLR+ GKVTV ++ LK +G++H K GV++ HFEV + ALL IKE
Sbjct: 69 PHATTVFVMTCESAVQLRKAGKVTVKESDLKRIGAIHFKTGVVNEHFEVTRFALLETIKE 128
Query: 119 AVGEKWR-DMNCTWVEAYDQL 138
AV E W +M W AYDQL
Sbjct: 129 AVPEMWSPEMKNAWGVAYDQL 149
>pdb|1GDI|A Chain A, Crystal Structure Of Ferric Complexes Of The Yellow Lupin
Leghemoglobin With Isoquinoline At 1.8 Angstroms
Resolution (Russian)
pdb|1GDJ|A Chain A, Crystal Structure Of Ferric Complexes Of The Yellow Lupin
Leghemoglobin With Isoquinoline At 1.8 Angstroms
Resolution (Russian)
pdb|1GDK|A Chain A, Crystal Structure Of Ferric Complexes Of The Yellow Lupin
Leghemoglobin With Isoquinoline At 1.8 Angstroms
Resolution (Russian)
pdb|1GDL|A Chain A, Crystal Structure Of Ferric Complexes Of The Yellow Lupin
Leghemoglobin With Isoquinoline At 1.8 Angstroms
Resolution (Russian)
pdb|1LH1|A Chain A, X-Ray Structural Investigation Of Leghemoglobin. Vi.
Structure Of Acetate-Ferrileghemoglobin At A Resolution
Of 2.0 Angstroms (Russian)
pdb|1LH2|A Chain A, X-Ray Structural Investigation Of Leghemoglobin. Vi.
Structure Of Acetate-Ferrileghemoglobin At A Resolution
Of 2.0 Angstroms (Russian)
pdb|1LH3|A Chain A, X-Ray Structural Investigation Of Leghemoglobin. Vi.
Structure Of Acetate-Ferrileghemoglobin At A Resolution
Of 2.0 Angstroms (Russian)
pdb|1LH5|A Chain A, X-Ray Structural Investigation Of Leghemoglobin. Vi.
Structure Of Acetate-Ferrileghemoglobin At A Resolution
Of 2.0 Angstroms (Russian)
pdb|1LH6|A Chain A, X-Ray Structural Investigation Of Leghemoglobin. Vi.
Structure Of Acetate-Ferrileghemoglobin At A Resolution
Of 2.0 Angstroms (Russian)
pdb|1LH7|A Chain A, X-Ray Structural Investigation Of Leghemoglobin. Vi.
Structure Of Acetate-Ferrileghemoglobin At A Resolution
Of 2.0 Angstroms (Russian)
pdb|2GDM|A Chain A, Leghemoglobin (oxy)
pdb|2LH1|A Chain A, X-Ray Structural Investigation Of Leghemoglobin. Vi.
Structure Of Acetate-Ferrileghemoglobin At A Resolution
Of 2.0 Angstroms (Russian)
pdb|2LH2|A Chain A, X-ray Structural Investigation Of Leghemoglobin. Vi.
Structure Of Acetate-ferrileghemoglobin At A Resolution
Of 2.0 Angstroms (russian)
pdb|2LH3|A Chain A, X-Ray Structural Investigation Of Leghemoglobin. Vi.
Structure Of Acetate-Ferrileghemoglobin At A Resolution
Of 2.0 Angstroms (Russian)
pdb|2LH5|A Chain A, X-Ray Structural Investigation Of Leghemoglobin. Vi.
Structure Of Acetate-Ferrileghemoglobin At A Resolution
Of 2.0 Angstroms (Russian)
pdb|2LH6|A Chain A, X-Ray Structural Investigation Of Leghemoglobin. Vi.
Structure Of Acetate-Ferrileghemoglobin At A Resolution
Of 2.0 Angstroms (Russian)
pdb|2LH7|A Chain A, X-Ray Structural Investigation Of Leghemoglobin. Vi.
Structure Of Acetate-Ferrileghemoglobin At A Resolution
Of 2.0 Angstroms (Russian)
Length = 153
Score = 136 bits (342), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 74/141 (52%), Positives = 94/141 (66%), Gaps = 7/141 (4%)
Query: 3 FTEKQEALVNESWE----ILKEISHKIACVSSPQIAPAAKGMFSFLRDSDGIPQNNPKLK 58
TE Q ALV SWE + + +H+ + +IAPAAK +FSFL+ + +PQNNP+L+
Sbjct: 3 LTESQAALVKSSWEEFNANIPKHTHRF-FILVLEIAPAAKDLFSFLKGTSEVPQNNPELQ 61
Query: 59 AHAVKVFKMTCESAIQLREKGKVTVADTTLKYLGSVHLKNGVLDPHFEVVKEALLRAIKE 118
AHA KVFK+ E+AIQL G V V D TLK LGSVH+ GV D HF VVKEA+L+ IKE
Sbjct: 62 AHAGKVFKLVYEAAIQLEVTG-VVVTDATLKNLGSVHVSKGVADAHFPVVKEAILKTIKE 120
Query: 119 AVGEKW-RDMNCTWVEAYDQL 138
VG KW ++N W AYD+L
Sbjct: 121 VVGAKWSEELNSAWTIAYDEL 141
>pdb|1FSL|A Chain A, Ferric Soybean Leghemoglobin Complexed With Nicotinate
pdb|1FSL|B Chain B, Ferric Soybean Leghemoglobin Complexed With Nicotinate
pdb|1BIN|A Chain A, Leghemoglobin A (Acetomet)
pdb|1BIN|B Chain B, Leghemoglobin A (Acetomet)
Length = 143
Score = 114 bits (284), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/142 (48%), Positives = 89/142 (62%), Gaps = 10/142 (7%)
Query: 1 MVFTEKQEALVNESWEILKEISHKIACVSSPQI---APAAKGMFSFLRDSDGIPQNNPKL 57
+ FTEKQ+ALV+ S+E K + + V I APAAK +FSFL ++G+ NPKL
Sbjct: 1 VAFTEKQDALVSSSFEAFKANIPQYSVVFYTSILEKAPAAKDLFSFL--ANGVDPTNPKL 58
Query: 58 KAHAVKVFKMTCESAIQLREKGKVTVADTTLKYLGSVHLKNGVLDPHFEVVKEALLRAIK 117
HA K+F + +SA QL+ G V VAD L GSVH + V DP F VVKEALL+ IK
Sbjct: 59 TGHAEKLFALVRDSAGQLKASGTV-VADAAL---GSVHAQKAVTDPQFVVVKEALLKTIK 114
Query: 118 EAVGEKWRD-MNCTWVEAYDQL 138
AVG+KW D ++ W AYD+L
Sbjct: 115 AAVGDKWSDELSRAWEVAYDEL 136
>pdb|3UBC|A Chain A, Oxygen-Bound Hell's Gate Globin I By Lb Nanotemplate
Method
pdb|3UBC|D Chain D, Oxygen-Bound Hell's Gate Globin I By Lb Nanotemplate
Method
pdb|3UBC|G Chain G, Oxygen-Bound Hell's Gate Globin I By Lb Nanotemplate
Method
pdb|3UBV|A Chain A, Oxygen-Bound Hell's Gate Globin I By Classical Hanging
Drop
pdb|3UBV|D Chain D, Oxygen-Bound Hell's Gate Globin I By Classical Hanging
Drop
pdb|3UBV|G Chain G, Oxygen-Bound Hell's Gate Globin I By Classical Hanging
Drop
Length = 131
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 87 TLKYLGSVHLKNGVLDPHFEVVKEALLRAIKEAVGEKW-RDMNCTWVEAY 135
TL+ LG H + GV+D H+ +V + LL++I+E +G+ + + W + Y
Sbjct: 73 TLQDLGRRHKQYGVVDSHYPLVGDCLLKSIQEYLGQGFTEEAKAAWTKVY 122
>pdb|3S1I|A Chain A, Crystal Structure Of Oxygen-Bound Hell's Gate Globin I
pdb|3S1I|B Chain B, Crystal Structure Of Oxygen-Bound Hell's Gate Globin I
pdb|3S1I|C Chain C, Crystal Structure Of Oxygen-Bound Hell's Gate Globin I
pdb|3S1J|A Chain A, Crystal Structure Of Acetate-Bound Hell's Gate Globin I
pdb|3S1J|B Chain B, Crystal Structure Of Acetate-Bound Hell's Gate Globin I
pdb|3S1J|C Chain C, Crystal Structure Of Acetate-Bound Hell's Gate Globin I
Length = 139
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 87 TLKYLGSVHLKNGVLDPHFEVVKEALLRAIKEAVGEKW-RDMNCTWVEAY 135
TL+ LG H + GV+D H+ +V + LL++I+E +G+ + + W + Y
Sbjct: 74 TLQDLGRRHKQYGVVDSHYPLVGDCLLKSIQEYLGQGFTEEAKAAWTKVY 123
>pdb|3SE7|A Chain A, Ancient Vana
pdb|3SE7|B Chain B, Ancient Vana
pdb|3SE7|C Chain C, Ancient Vana
pdb|3SE7|D Chain D, Ancient Vana
pdb|3SE7|E Chain E, Ancient Vana
pdb|3SE7|F Chain F, Ancient Vana
Length = 346
Score = 29.6 bits (65), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 93 SVHLKNGVLDPHFEVVKEALLRAIKEAVGEKWRDMNC 129
+ HL GV +P + + ++ + + GE W D NC
Sbjct: 28 ATHLGTGVFEPFYLGITKSGAWQLCDGPGENWEDGNC 64
>pdb|3BBO|K Chain K, Homology Model For The Spinach Chloroplast 50s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 224
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 99 GVLDPHFEVVKEALLRAIKEAVGEKWRDMNCTWVEA 134
G DP E V + + ++ EK D+NCT +E+
Sbjct: 159 GSKDPQMEKVGKITIDQLRGIATEKLPDLNCTTIES 194
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 102 DP--HFEVVKEALLRAIKEAVGEKWRDMNCTW 131
DP HF EALL IKEA G D TW
Sbjct: 3 DPIVHFNGTHEALLNRIKEAPGLVLVDFFATW 34
>pdb|1YZ7|A Chain A, Crystal Structure Of A C-Terminal Segment Of The Alpha
Subunit Of Aif2 From Pyrococcus Abyssi
Length = 188
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 11/73 (15%)
Query: 58 KAHAVKVFKMTCESAIQLREKG-KVTVADTTLKYLGSVHLKNGVLDPHF-------EVVK 109
K + V++ K E+ I+ R++ K + YLG+ + + P + E +
Sbjct: 101 KPNGVEIIK---EALIRARDRANKEKDVEVKFTYLGAPRYRIDITAPDYYKAEEVLESIA 157
Query: 110 EALLRAIKEAVGE 122
E +LR IKEA GE
Sbjct: 158 EEILRVIKEAGGE 170
>pdb|1YZ6|A Chain A, Crystal Structure Of Intact Alpha Subunit Of Aif2 From
Pyrococcus Abyssi
Length = 274
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 11/73 (15%)
Query: 58 KAHAVKVFKMTCESAIQLREKG-KVTVADTTLKYLGSVHLKNGVLDPHF-------EVVK 109
K + V++ K E+ I+ R++ K + YLG+ + + P + E +
Sbjct: 187 KPNGVEIIK---EALIRARDRANKEKDVEVKFTYLGAPRYRIDITAPDYYKAEEVLESIA 243
Query: 110 EALLRAIKEAVGE 122
E +LR IKEA GE
Sbjct: 244 EEILRVIKEAGGE 256
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,157,170
Number of Sequences: 62578
Number of extensions: 150241
Number of successful extensions: 487
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 458
Number of HSP's gapped (non-prelim): 21
length of query: 151
length of database: 14,973,337
effective HSP length: 90
effective length of query: 61
effective length of database: 9,341,317
effective search space: 569820337
effective search space used: 569820337
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)