Query 037487
Match_columns 151
No_of_seqs 140 out of 1051
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 12:48:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037487.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037487hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01040 globin Globins are hem 100.0 2.4E-31 5.2E-36 185.5 11.7 136 4-142 1-140 (140)
2 PRK13289 bifunctional nitric o 100.0 1.7E-27 3.7E-32 192.6 13.6 132 3-146 2-137 (399)
3 PF00042 Globin: Globin plant 99.9 2.6E-26 5.7E-31 154.6 9.2 104 7-113 1-110 (110)
4 COG1017 Hmp Hemoglobin-like fl 99.9 1.1E-25 2.5E-30 154.4 11.5 132 2-145 1-136 (150)
5 KOG3378 Globins and related he 99.9 1.2E-22 2.5E-27 154.2 8.1 130 3-144 2-135 (385)
6 cd01067 globin_like superfamil 99.8 7E-18 1.5E-22 115.2 9.4 106 27-139 7-116 (117)
7 cd01068 sensor_globin Globin d 98.6 1.4E-06 3.1E-11 61.1 11.8 106 1-121 10-122 (147)
8 PF11563 Protoglobin: Protoglo 98.5 1.8E-06 3.8E-11 61.3 10.2 134 1-149 12-155 (158)
9 cd00454 Trunc_globin Truncated 98.1 1.3E-05 2.8E-10 54.1 7.3 94 27-143 20-114 (116)
10 PF01152 Bac_globin: Bacterial 97.6 0.001 2.3E-08 45.0 9.6 95 27-144 20-119 (120)
11 COG2346 Truncated hemoglobins 93.7 0.38 8.2E-06 33.5 6.5 100 27-146 27-127 (133)
12 PF08064 UME: UME (NUC010) dom 72.5 25 0.00054 23.2 7.4 81 56-139 4-86 (107)
13 PF13720 Acetyltransf_11: Udp 70.9 5.5 0.00012 25.3 2.8 40 2-41 27-71 (83)
14 PF07742 BTG: BTG family; Int 70.3 9 0.00019 26.1 3.9 40 85-126 9-48 (118)
15 PF00502 Phycobilisome: Phycob 67.4 42 0.0009 23.8 8.3 124 3-142 14-156 (157)
16 PF14361 RsbRD_N: RsbT co-anta 65.5 35 0.00076 22.3 7.5 66 56-122 36-104 (105)
17 TIGR02019 BchJ bacteriochlorop 64.2 49 0.0011 24.4 7.1 72 75-146 14-89 (188)
18 smart00099 btg1 tob/btg1 famil 64.2 15 0.00034 24.6 4.0 40 85-126 9-48 (108)
19 PF11239 DUF3040: Protein of u 56.7 17 0.00038 22.7 3.2 21 1-21 1-21 (82)
20 PF05427 FIBP: Acidic fibrobla 56.1 1.1E+02 0.0024 25.0 9.9 87 60-147 272-360 (361)
21 cd07922 CarBa CarBa is the A s 54.6 13 0.00029 23.5 2.4 37 2-38 35-74 (81)
22 PRK09279 pyruvate phosphate di 54.0 1E+02 0.0023 28.3 8.6 91 52-148 128-222 (879)
23 PF08557 Lipid_DES: Sphingolip 53.1 4 8.6E-05 22.2 -0.2 17 27-43 19-35 (39)
24 PHA02943 hypothetical protein; 51.9 23 0.00049 25.4 3.4 40 8-47 77-120 (165)
25 PF04444 Dioxygenase_N: Catech 45.3 73 0.0016 19.7 6.5 54 54-115 1-56 (74)
26 PF08897 DUF1841: Domain of un 41.5 1.2E+02 0.0027 21.2 6.5 106 6-118 5-121 (137)
27 smart00802 UME Domain in UVSB 41.0 1.1E+02 0.0023 20.4 6.8 81 56-139 4-86 (107)
28 PF10264 Stork_head: Winged he 40.3 96 0.0021 19.6 4.7 54 64-119 12-65 (80)
29 TIGR02465 chlorocat_1_2 chloro 40.3 1.7E+02 0.0037 22.5 7.0 59 54-120 1-60 (246)
30 KOG4404 Tandem pore domain K+ 39.9 1.5E+02 0.0033 24.0 6.6 51 74-125 29-80 (350)
31 KOG2344 Exocyst component prot 38.2 1.4E+02 0.0031 26.2 6.8 79 52-141 429-520 (623)
32 cd03460 1,2-CTD Catechol 1,2 d 37.4 1E+02 0.0022 24.3 5.4 57 37-94 2-59 (282)
33 TIGR02438 catachol_actin catec 35.5 2.2E+02 0.0048 22.4 6.9 62 52-121 30-92 (281)
34 PRK09458 pspB phage shock prot 34.3 74 0.0016 19.9 3.3 38 2-39 35-74 (75)
35 PF07637 PSD5: Protein of unkn 31.9 1.1E+02 0.0025 18.0 5.2 48 85-134 4-52 (64)
36 PF03172 Sp100: Sp100 domain; 30.0 19 0.00041 23.9 0.2 37 3-46 63-99 (103)
37 COG3023 ampD N-acetyl-anhydrom 29.9 2E+02 0.0044 22.3 5.7 55 79-138 198-254 (257)
38 cd03462 1,2-CCD chlorocatechol 29.8 2.6E+02 0.0057 21.6 6.9 59 54-120 2-61 (247)
39 PF07750 GcrA: GcrA cell cycle 28.6 56 0.0012 23.4 2.5 17 1-17 1-17 (162)
40 COG1043 LpxA Acyl-[acyl carrie 28.3 63 0.0014 25.0 2.7 42 2-43 204-250 (260)
41 PHA02690 hypothetical protein; 28.2 1.6E+02 0.0035 18.6 4.4 30 113-143 24-54 (90)
42 cd07921 PCA_45_Doxase_A_like S 28.1 46 0.00099 22.3 1.8 20 2-21 44-64 (106)
43 PF08921 DUF1904: Domain of un 27.3 39 0.00084 22.6 1.3 27 95-121 3-30 (108)
44 PF13324 GCIP: Grap2 and cycli 27.3 1.6E+02 0.0035 22.7 5.0 85 3-91 179-264 (275)
45 PF02035 Coagulin: Coagulin; 27.1 70 0.0015 22.3 2.6 37 3-40 20-58 (174)
46 cd07321 Extradiol_Dioxygenase_ 27.0 44 0.00096 20.8 1.5 18 2-19 34-52 (77)
47 PF06667 PspB: Phage shock pro 26.5 1.2E+02 0.0027 18.9 3.4 38 2-39 35-74 (75)
48 PF14542 Acetyltransf_CG: GCN5 26.3 49 0.0011 20.4 1.6 33 8-40 41-78 (78)
49 PF13373 DUF2407_C: DUF2407 C- 26.1 84 0.0018 22.0 2.9 21 1-21 9-29 (140)
50 cd07923 Gallate_dioxygenase_C 26.0 46 0.001 21.7 1.5 17 2-18 36-53 (94)
51 PF08359 TetR_C_4: YsiA-like p 25.2 2.1E+02 0.0045 18.9 5.3 34 59-98 3-36 (133)
52 COG5420 Uncharacterized conser 24.4 61 0.0013 19.6 1.6 21 113-133 29-50 (71)
53 COG0851 MinE Septum formation 24.3 2.1E+02 0.0045 18.5 4.6 28 94-121 27-55 (88)
54 PF03645 Tctex-1: Tctex-1 fami 24.1 2E+02 0.0043 18.3 5.3 38 107-147 2-41 (101)
55 PF04391 DUF533: Protein of un 23.9 2.9E+02 0.0064 20.3 5.6 41 3-43 96-137 (188)
56 PF08539 HbrB: HbrB-like; Int 23.8 2.8E+02 0.006 19.8 7.1 79 66-144 10-100 (158)
57 KOG4103 Mitochondrial F1F0-ATP 23.5 1E+02 0.0023 20.3 2.7 21 2-22 40-60 (103)
58 KOG0868 Glutathione S-transfer 23.5 2.1E+02 0.0047 21.3 4.6 42 51-99 88-129 (217)
59 PF08855 DUF1825: Domain of un 23.1 2.4E+02 0.0053 18.9 6.4 35 85-119 69-103 (108)
60 COG4573 GatZ Predicted tagatos 22.9 1.2E+02 0.0025 24.9 3.4 55 94-148 54-123 (426)
61 COG3028 Uncharacterized protei 22.7 1.9E+02 0.0041 21.2 4.2 81 29-113 45-127 (187)
62 TIGR00624 tag DNA-3-methyladen 22.4 1.4E+02 0.0031 21.8 3.6 110 27-142 45-173 (179)
63 TIGR02677 conserved hypothetic 22.4 2.5E+02 0.0054 24.0 5.5 53 85-137 162-217 (494)
64 cd07925 LigA_like_1 The A subu 22.4 72 0.0016 21.3 1.9 20 2-21 44-64 (106)
65 PF03750 DUF310: Protein of un 22.4 1.6E+02 0.0034 19.8 3.6 11 107-117 103-113 (119)
66 PRK12557 H(2)-dependent methyl 22.3 1.7E+02 0.0037 23.5 4.4 36 100-136 304-341 (342)
67 PRK13378 protocatechuate 4,5-d 22.3 71 0.0015 21.7 1.8 20 2-21 55-75 (117)
68 KOG3991 Uncharacterized conser 22.0 3.8E+02 0.0082 20.7 6.3 48 75-122 89-136 (256)
69 PRK00106 hypothetical protein; 21.6 1.7E+02 0.0037 25.3 4.4 82 10-94 302-388 (535)
70 TIGR02792 PCA_ligA protocatech 21.4 76 0.0016 21.6 1.8 20 2-21 49-69 (117)
71 PF08649 DASH_Dad1: DASH compl 21.3 62 0.0014 19.2 1.3 20 120-139 38-57 (58)
72 PF12162 STAT1_TAZ2bind: STAT1 21.1 1.1E+02 0.0024 14.6 1.8 13 1-13 8-20 (23)
73 PF12205 GIT1_C: G protein-cou 21.1 2.6E+02 0.0057 19.1 4.5 42 53-94 36-77 (123)
74 PF05278 PEARLI-4: Arabidopsis 20.8 4.2E+02 0.0091 20.8 10.2 40 27-78 102-141 (269)
75 PF09660 DUF2397: Protein of u 20.7 3.6E+02 0.0078 22.9 6.2 51 85-135 164-217 (486)
76 PRK02289 4-oxalocrotonate taut 20.5 1.2E+02 0.0026 17.5 2.4 25 98-122 10-34 (60)
77 PRK00285 ihfA integration host 20.4 2.4E+02 0.0052 18.0 4.1 24 98-121 16-39 (99)
78 PF08362 TetR_C_3: YcdC-like p 20.4 3.1E+02 0.0067 19.1 6.3 119 9-146 2-140 (143)
79 TIGR03031 cas_csx12 CRISPR-ass 20.0 1.5E+02 0.0032 26.3 3.7 45 88-134 47-92 (802)
No 1
>cd01040 globin Globins are heme proteins, which bind and transport oxygen. This family summarizes a diverse set of homologous protein domains, including: (1) tetrameric vertebrate hemoglobins, which are the major protein component of erythrocytes and transport oxygen in the bloodstream, (2) microorganismal flavohemoglobins, which are linked to C-terminal FAD-dependend reductase domains, (3) homodimeric bacterial hemoglobins, such as from Vitreoscilla, (4) plant leghemoglobins (symbiotic hemoglobins, involved in nitrogen metabolism in plant rhizomes), (5) plant non-symbiotic hexacoordinate globins and hexacoordinate globins from bacteria and animals, such as neuroglobin, (6) invertebrate hemoglobins, which may occur in tandem-repeat arrangements, and (7) monomeric myoglobins found in animal muscle tissue.
Probab=99.97 E-value=2.4e-31 Score=185.48 Aligned_cols=136 Identities=27% Similarity=0.451 Sum_probs=127.2
Q ss_pred CHHHHHHHHHHHHHHHhcchhhh---hhhccccCCchhhcCccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhcccCc
Q 037487 4 TEKQEALVNESWEILKEISHKIA---CVSSPQIAPAAKGMFSFLRDSDGIPQNNPKLKAHAVKVFKMTCESAIQLREKGK 80 (151)
Q Consensus 4 t~~e~~~i~~SW~~v~~~~~~~~---y~~lF~~~P~~~~~F~~~~~~~~~l~~~~~~~~H~~~v~~~l~~~i~~l~~~~~ 80 (151)
|+.|+++|++||+.+..+...+| |.+||+.+|+++.+|+.++..+.++.+++.|+.|+.+++.+++.+|.++++++.
T Consensus 1 s~~~~~~l~~sw~~~~~~~~~~g~~~f~~lf~~~P~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~~~ 80 (140)
T cd01040 1 SAEEKKLVKASWAKLKADREEIGLEFYERLFKAHPETRALFSRFGGLSAALKGSPKFKAHGKRVLNALDEAIKNLDDLEA 80 (140)
T ss_pred CHHHHHHHHHHHHHHHccHHhHHHHHHHHHHHHChhHHHHhHHhCCchHhHccCHHHHHHHHHHHHHHHHHHHhccChHH
Confidence 68999999999999998888888 999999999999999998665446789999999999999999999999988777
Q ss_pred hhhHHHHHHHHHHHHhhCCCCCchHhHHHHHHHHHHHHHhcccChh-HHHHHHHHHHHHHHHH
Q 037487 81 VTVADTTLKYLGSVHLKNGVLDPHFEVVKEALLRAIKEAVGEKWRD-MNCTWVEAYDQLAAAI 142 (151)
Q Consensus 81 l~~~~~~l~~Lg~~H~~~gv~~~~f~~~~~~ll~~l~~~lg~~~~~-~~~AW~~~~~~i~~~i 142 (151)
+ ...|++||++|.++|++++||+.|+++|+.++++.+|+.|++ ..+||.+++..|++.|
T Consensus 81 l---~~~l~~lg~~H~~~~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~aW~~~~~~i~~~~ 140 (140)
T cd01040 81 L---KALLAKLGRKHAKRGVDPEHFKLFGEALLEVLAEVLGDDFTPEVKAAWDKLLDVIADAL 140 (140)
T ss_pred H---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCcCCHHHHHHHHHHHHHHHHhC
Confidence 6 888999999999999999999999999999999999999999 9999999999998764
No 2
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=99.95 E-value=1.7e-27 Score=192.57 Aligned_cols=132 Identities=19% Similarity=0.261 Sum_probs=119.4
Q ss_pred CCHHHHHHHHHHHHHHHhcchhhh---hhhccccCCchhhcCccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhcccC
Q 037487 3 FTEKQEALVNESWEILKEISHKIA---CVSSPQIAPAAKGMFSFLRDSDGIPQNNPKLKAHAVKVFKMTCESAIQLREKG 79 (151)
Q Consensus 3 Lt~~e~~~i~~SW~~v~~~~~~~~---y~~lF~~~P~~~~~F~~~~~~~~~l~~~~~~~~H~~~v~~~l~~~i~~l~~~~ 79 (151)
||++|+++|++||+.+..+...+| |.+||+.+|+++++|+.+++ ....|..+++.+++.+|.+|++++
T Consensus 2 ls~~~~~~i~~sw~~~~~~~~~~~~~fy~~lF~~~P~~~~~F~~~~~---------~~~~~~~~~~~~l~~~v~~ld~~~ 72 (399)
T PRK13289 2 LSAQTIAIVKATVPLLEEHGEALTAHFYDRMFSHNPELKNIFNQSNQ---------RNGDQPEALANAVLAYARNIDNLE 72 (399)
T ss_pred CCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhChHHHHhcCcccc---------cchhHHHHHHHHHHHHHHhcCChH
Confidence 999999999999999999999998 99999999999999987532 123345578899999888888876
Q ss_pred chhhHHHHHHHHHHHHhhCCCCCchHhHHHHHHHHHHHHHhcccChh-HHHHHHHHHHHHHHHHHHhh
Q 037487 80 KVTVADTTLKYLGSVHLKNGVLDPHFEVVKEALLRAIKEAVGEKWRD-MNCTWVEAYDQLAAAIKAEM 146 (151)
Q Consensus 80 ~l~~~~~~l~~Lg~~H~~~gv~~~~f~~~~~~ll~~l~~~lg~~~~~-~~~AW~~~~~~i~~~i~~~~ 146 (151)
.+ .+.|++||.+|.+|||+|+||+.+++||+.+|++++|+.||+ ..+||.++|+.|++.|..+.
T Consensus 73 ~l---~~~l~~L~~~H~~~gV~~~~f~~~~~~ll~~l~~~~~~~~t~~~~~AW~~~~~~l~~~~~~~~ 137 (399)
T PRK13289 73 AL---LPAVERIAQKHVSLQIKPEHYPIVGEHLLAAIREVLGDAATDEVLDAWGEAYGVLADVFIGRE 137 (399)
T ss_pred HH---HHHHHHHHHHHHHcCCChHHhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 888999999999999999999999999999999999999999 99999999999999999774
No 3
>PF00042 Globin: Globin plant globin signature erythrocruorin family signature alpha hemoglobin signature myoglobin signature thalassemia.; InterPro: IPR000971 Globins are haem-containing proteins involved in binding and/or transporting oxygen. They belong to a very large and well studied family that is widely distributed in many organisms []. Globins have evolved from a common ancestor and can be divided into three groups: single-domain globins, and two types of chimeric globins, flavohaemoglobins and globin-coupled sensors. Bacteria have all three types of globins, while archaea lack flavohaemoglobins, and eukaryotes lack globin-coupled sensors []. Several functionally different haemoglobins can coexist in the same species. The major types of globins include: Haemoglobin (Hb): trimer of two alpha and two beta chains, although embryonic and foetal forms can substitute the alpha or beta chain for ones with higher oxygen affinity, such as gamma, delta, epsilon or zeta chains. Hb transports oxygen from lungs to other tissues in vertebrates []. Hb proteins are also present in unicellular organisms where they act as enzymes or sensors []. Myoglobin (Mb): monomeric protein responsible for oxygen storage in vertebrate muscle []. Neuroglobin: a myoglobin-like haemprotein expressed in vertebrate brain and retina, where it is involved in neuroprotection from damage due to hypoxia or ischemia []. Neuroglobin belongs to a branch of the globin family that diverged early in evolution. Cytoglobin: an oxygen sensor expressed in multiple tissues. Related to neuroglobin []. Erythrocruorin: highly cooperative extracellular respiratory proteins found in annelids and arthropods that are assembled from as many as 180 subunit into hexagonal bilayers []. Leghaemoglobin (legHb or symbiotic Hb): occurs in the root nodules of leguminous plants, where it facilitates the diffusion of oxygen to symbiotic bacteriods in order to promote nitrogen fixation. Non-symbiotic haemoglobin (NsHb): occurs in non-leguminous plants, and can be over-expressed in stressed plants []. Flavohaemoglobins (FHb): chimeric, with an N-terminal globin domain and a C-terminal ferredoxin reductase-like NAD/FAD-binding domain. FHb provides protection against nitric oxide via its C-terminal domain, which transfers electrons to haem in the globin []. Globin-coupled sensors: chimeric, with an N-terminal myoglobin-like domain and a C-terminal domain that resembles the cytoplasmic signalling domain of bacterial chemoreceptors. They bind oxygen, and act to initiate an aerotactic response or regulate gene expression [, ]. Protoglobin: a single domain globin found in archaea that is related to the N-terminal domain of globin-coupled sensors []. Truncated 2/2 globin: lack the first helix, giving them a 2-over-2 instead of the canonical 3-over-3 alpha-helical sandwich fold. Can be divided into three main groups (I, II and II) based on structural features []. This entry covers most of the globin family of proteins, but it omits some bacterial globins and the protoglobins. More information about these proteins can be found at Protein of the Month: Haemoglobin [].; GO: 0005506 iron ion binding, 0020037 heme binding; PDB: 2WTH_A 2WTG_A 3A59_G 3FS4_C 3CY5_C 3D1A_B 2RI4_J 3EU1_B 1JEB_A 2Z6N_B ....
Probab=99.94 E-value=2.6e-26 Score=154.60 Aligned_cols=104 Identities=33% Similarity=0.457 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHhcchhhh---hhhccccCCchhhcCccCCC-CC-CCCCCChHHHHHHHHHHHHHHHHHHHhcccCch
Q 037487 7 QEALVNESWEILKEISHKIA---CVSSPQIAPAAKGMFSFLRD-SD-GIPQNNPKLKAHAVKVFKMTCESAIQLREKGKV 81 (151)
Q Consensus 7 e~~~i~~SW~~v~~~~~~~~---y~~lF~~~P~~~~~F~~~~~-~~-~~l~~~~~~~~H~~~v~~~l~~~i~~l~~~~~l 81 (151)
|+++|++||+.+..+...+| |.+||+.+|+++++|+.+++ .+ .++.+|+.|++|+.+|+.+++.+|.+|++++.+
T Consensus 1 q~~lv~~sW~~v~~~~~~~g~~~f~~lF~~~P~~~~~F~~~~~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~l~~~~~l 80 (110)
T PF00042_consen 1 QKKLVRQSWAKVKPDKDEFGSEFFQRLFEEYPDYKKLFPKFKDIVPLEELKNNPEFKAHAQRVMEALDEAVDNLDDPESL 80 (110)
T ss_dssp HHHHHHHHHHHHHTGHHHHHHHHHHHHHHHSGGGGGGGTTGTTTSSHHHHTTSHHHHHHHHHHHHHHHHHHHTTTSTHGH
T ss_pred CHHHHHHHHHHHHccHHHHHHHHHHHHHHHCHHHHhhcccccccchHHHHhccchHHHHHHHHHHHHHHHHHccCChHhH
Confidence 78999999999999999999 99999999999999998755 22 357899999999999999999999999887776
Q ss_pred hhHHHHHHHHHHHHhhCC-CCCchHhHHHHHHH
Q 037487 82 TVADTTLKYLGSVHLKNG-VLDPHFEVVKEALL 113 (151)
Q Consensus 82 ~~~~~~l~~Lg~~H~~~g-v~~~~f~~~~~~ll 113 (151)
...|.+||++|.+|| |+|+||+.|++||+
T Consensus 81 ---~~~l~~lg~~H~~~~~v~~~~f~~~~~~ll 110 (110)
T PF00042_consen 81 ---EAMLRKLGRRHKKRGGVTPEHFELFGEALL 110 (110)
T ss_dssp ---HHHHHHHHHHHHHTTTSSTHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHhHCcCCCCHHHHHHHHHHHC
Confidence 888999999999999 99999999999986
No 4
>COG1017 Hmp Hemoglobin-like flavoprotein [Energy production and conversion]
Probab=99.93 E-value=1.1e-25 Score=154.44 Aligned_cols=132 Identities=21% Similarity=0.321 Sum_probs=111.8
Q ss_pred CCCHHHHHHHHHHHHHHHhcchhhh---hhhccccCCchhhcCccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhccc
Q 037487 2 VFTEKQEALVNESWEILKEISHKIA---CVSSPQIAPAAKGMFSFLRDSDGIPQNNPKLKAHAVKVFKMTCESAIQLREK 78 (151)
Q Consensus 2 ~Lt~~e~~~i~~SW~~v~~~~~~~~---y~~lF~~~P~~~~~F~~~~~~~~~l~~~~~~~~H~~~v~~~l~~~i~~l~~~ 78 (151)
.||++++++|++|-+.+...+..+. |.++|..||+++++|+.-.+.++ .|...|. ++|.....++||+
T Consensus 1 mLs~~~~~iIKaTvPlL~~~G~~iT~~FY~~MF~~hPEl~niFN~~nQ~~G--~Q~~aLA-------~ai~ayA~nIdnl 71 (150)
T COG1017 1 MLSEETIAIIKATVPLLEEHGETITAHFYKRMFAHHPELKNIFNMANQKNG--DQPKALA-------NAILAYAKNIDNL 71 (150)
T ss_pred CCCHHHHHHHHHhhHHHHhcchHHHHHHHHHHHhhCHHHHHHHhHhhhccc--ccHHHHH-------HHHHHHHHhcCCH
Confidence 4899999999999999999999987 99999999999999998654332 2332332 3344444457775
Q ss_pred CchhhHHHHHHHHHHHHhhCCCCCchHhHHHHHHHHHHHHHhcccChh-HHHHHHHHHHHHHHHHHHh
Q 037487 79 GKVTVADTTLKYLGSVHLKNGVLDPHFEVVKEALLRAIKEAVGEKWRD-MNCTWVEAYDQLAAAIKAE 145 (151)
Q Consensus 79 ~~l~~~~~~l~~Lg~~H~~~gv~~~~f~~~~~~ll~~l~~~lg~~~~~-~~~AW~~~~~~i~~~i~~~ 145 (151)
+.+ .+.+.+++.+|.++||.|+||+.+|++|+.+++++||+..|+ +.+||.++|+.++++++..
T Consensus 72 ~~l---~~~v~rIa~KHvsl~I~pEhYpIVge~LL~aI~evlgd~at~evl~AW~~AY~~lA~~lI~~ 136 (150)
T COG1017 72 EAL---LPVVERIAHKHVSLQIKPEHYPIVGEHLLAAIKEVLGDAATPEVLEAWGEAYGVLADVLIDR 136 (150)
T ss_pred HHH---HHHHHHHHHHHHhcCCChhhccHHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 555 888999999999999999999999999999999999999999 9999999999999999853
No 5
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=99.88 E-value=1.2e-22 Score=154.20 Aligned_cols=130 Identities=17% Similarity=0.329 Sum_probs=109.7
Q ss_pred CCHHHHHHHHHHHHHHHhcchhhh---hhhccccCCchhhcCccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhcccC
Q 037487 3 FTEKQEALVNESWEILKEISHKIA---CVSSPQIAPAAKGMFSFLRDSDGIPQNNPKLKAHAVKVFKMTCESAIQLREKG 79 (151)
Q Consensus 3 Lt~~e~~~i~~SW~~v~~~~~~~~---y~~lF~~~P~~~~~F~~~~~~~~~l~~~~~~~~H~~~v~~~l~~~i~~l~~~~ 79 (151)
|.+.++++||+||..+.+.+..++ |.++|..+|++.++|+.-.. ++.+.-..++-.+... ..|.|
T Consensus 2 l~e~~~~~Ir~s~p~le~sg~~~t~~fy~~ml~~~pelLp~Fn~~~q---------~~~sqpr~la~~ilaa---akNId 69 (385)
T KOG3378|consen 2 LEEPEPELIRQSWPALERSGLEHTTVFYARMLALEPELLPLFNYNCQ---------QFSSQPRKLALVILAA---AKNID 69 (385)
T ss_pred CccchhHHHHhhhHHHhhCcchHHHHHHHHHHhcChhhHHHHHHHHH---------HhcCChhHHHHHHHHH---hcChh
Confidence 667899999999999999998888 99999999999999987322 1222222334445554 34455
Q ss_pred chhhHHHHHHHHHHHHhhCCCCCchHhHHHHHHHHHHHHHhcccChh-HHHHHHHHHHHHHHHHHH
Q 037487 80 KVTVADTTLKYLGSVHLKNGVLDPHFEVVKEALLRAIKEAVGEKWRD-MNCTWVEAYDQLAAAIKA 144 (151)
Q Consensus 80 ~l~~~~~~l~~Lg~~H~~~gv~~~~f~~~~~~ll~~l~~~lg~~~~~-~~~AW~~~~~~i~~~i~~ 144 (151)
+|..+.+++..+|++|+..+|+++||..+|++|+.+|+++||+.+|| +.+||..+|+.++.+|+.
T Consensus 70 DLssL~~~l~qig~KHralqIK~ehypiVGe~LL~~l~e~LgdaaTPa~~~AWs~aYgava~i~i~ 135 (385)
T KOG3378|consen 70 DLSSLEEYLAQIGRKHRALQIKLEHYPIVGESLLYMLEECLGDAATPATRAAWSQAYGAVAQIMID 135 (385)
T ss_pred hHHHHHHHHHHHhhhhhheeechhhCccHHHHHHHHHHHHcCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 57777999999999999999999999999999999999999999999 999999999999999984
No 6
>cd01067 globin_like superfamily containing globins and truncated hemoglobins
Probab=99.75 E-value=7e-18 Score=115.15 Aligned_cols=106 Identities=16% Similarity=0.180 Sum_probs=93.6
Q ss_pred hhhccccCCchhhcCccCCCC-CCCCCCChHHHHHHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHhhCCC--CCc
Q 037487 27 CVSSPQIAPAAKGMFSFLRDS-DGIPQNNPKLKAHAVKVFKMTCESAIQLREKGKVTVADTTLKYLGSVHLKNGV--LDP 103 (151)
Q Consensus 27 y~~lF~~~P~~~~~F~~~~~~-~~~l~~~~~~~~H~~~v~~~l~~~i~~l~~~~~l~~~~~~l~~Lg~~H~~~gv--~~~ 103 (151)
|.+||+.+|+++++|+. ++. ..++++|+.+..|..+++..++.++.++.+++ + ...+++||.+|.++|| +++
T Consensus 7 y~~lf~~~P~~~~~F~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~---~~~~~~l~~~H~~~gi~~~~~ 81 (117)
T cd01067 7 YKHLFENYPPLRKYFKS-REEYTADVQNDPFFKKQGQKILLAIHVACAGYDDRE-F---NAKTRELASRHKRDHVHMPPE 81 (117)
T ss_pred HHHHHHhChhHHHHCCC-CCCCHHhccCCHHHHHHHHHHHHHHHHHHHccCcHh-H---HHHHHHHHHHHhhcCCCCCHH
Confidence 99999999999999995 333 23679999999999999999999887776644 4 8889999999999999 999
Q ss_pred hHhHHHHHHHHHHHHHhcccChh-HHHHHHHHHHHHH
Q 037487 104 HFEVVKEALLRAIKEAVGEKWRD-MNCTWVEAYDQLA 139 (151)
Q Consensus 104 ~f~~~~~~ll~~l~~~lg~~~~~-~~~AW~~~~~~i~ 139 (151)
+|..++++|+.+|++.++ |++ +.+||.++++...
T Consensus 82 ~f~~~~~~L~~~l~~~~~--~~~~~~~Aw~~~~~~~~ 116 (117)
T cd01067 82 VFTAFWKLLEEYLGKKTT--LDEPTIQAWHEIGREFA 116 (117)
T ss_pred HHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhhc
Confidence 999999999999999764 999 9999999998753
No 7
>cd01068 sensor_globin Globin domain present in Globin-Coupled-Sensors (GCS). These domains detect changes in intracellular concentrations of oxygen, carbon monoxyde, or nitrous oxide, which result in aerotaxis and/or gene regulation. One subgroup, the HemATs, are aerotactic heme sensors combining a globin with an MCP signaling domain, others function as gene regulators, by direct combination with DNA-binding domains, with domains modulating 2nd messengers, or with domains interacting with transcription factors or regulators.
Probab=98.61 E-value=1.4e-06 Score=61.12 Aligned_cols=106 Identities=14% Similarity=0.169 Sum_probs=77.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhcchhhh---hhhccccCCchhhcCccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhcc
Q 037487 1 MVFTEKQEALVNESWEILKEISHKIA---CVSSPQIAPAAKGMFSFLRDSDGIPQNNPKLKAHAVKVFKMTCESAIQLRE 77 (151)
Q Consensus 1 m~Lt~~e~~~i~~SW~~v~~~~~~~~---y~~lF~~~P~~~~~F~~~~~~~~~l~~~~~~~~H~~~v~~~l~~~i~~l~~ 77 (151)
.++|+++.+.+++.++.+....+.+. |.++++. |+++.+|+.. ..-.+++.+-. ..+... +..
T Consensus 10 ~~~~~~d~~~l~~~~~~~~~~~~~i~~~FY~~l~~~-p~~~~~~~~~-------~~~~~l~~~~~---~~~~~l---~~~ 75 (147)
T cd01068 10 LGLDEDDLSLLKALRPVIEANADELVDRFYDHLRRT-PETAAFLGDE-------SVVERLKSTQR---RHWVEL---FSG 75 (147)
T ss_pred hCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC-hHHHHHhCCc-------hHHHHHHHHHH---HHHHHH---hCC
Confidence 36899999999999999999999988 9988875 9999999862 11223333221 222222 233
Q ss_pred cCchhhHHHHHHHHHHHHhhCCCCCchH----hHHHHHHHHHHHHHhc
Q 037487 78 KGKVTVADTTLKYLGSVHLKNGVLDPHF----EVVKEALLRAIKEAVG 121 (151)
Q Consensus 78 ~~~l~~~~~~l~~Lg~~H~~~gv~~~~f----~~~~~~ll~~l~~~lg 121 (151)
+-+ +...+...++|..|.+.||+|.+| ..+.+.|+.++.+...
T Consensus 76 ~~d-~~y~~~~~~iG~~H~~igl~~~~~~~~~~~~~~~l~~~l~~~~~ 122 (147)
T cd01068 76 VYD-EAYIAQRVRIGEVHARIGLEPKWYLGGYAVLLELLIGALRESIL 122 (147)
T ss_pred CCC-HHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHcc
Confidence 222 345788899999999999999999 4777777777776653
No 8
>PF11563 Protoglobin: Protoglobin; PDB: 2VEE_G 3QZZ_A 3R0G_A 3QZX_A 2VEB_A 1OR6_A 1OR4_B 2W31_B.
Probab=98.51 E-value=1.8e-06 Score=61.29 Aligned_cols=134 Identities=16% Similarity=0.105 Sum_probs=93.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhcchhhh---hhhccccCCchhhcCccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhcc
Q 037487 1 MVFTEKQEALVNESWEILKEISHKIA---CVSSPQIAPAAKGMFSFLRDSDGIPQNNPKLKAHAVKVFKMTCESAIQLRE 77 (151)
Q Consensus 1 m~Lt~~e~~~i~~SW~~v~~~~~~~~---y~~lF~~~P~~~~~F~~~~~~~~~l~~~~~~~~H~~~v~~~l~~~i~~l~~ 77 (151)
++||+++.+++++.++.+.+..+.+. |.++. .+|+++.+|+.. ..-.+++..- ...+... +..
T Consensus 12 ~~l~~~d~~~L~~~~~~~~~~~~~iv~~FY~~l~-~~pe~~~~~~~~-------~~~~~lk~~q---~~~~~~l---~s~ 77 (158)
T PF11563_consen 12 LGLTEEDLELLRSLAPIIEPHAPEIVDDFYDHLL-RFPETARIFDSE-------STIERLKATQ---RRHWREL---FSG 77 (158)
T ss_dssp TT-SHHHHHHHHHHHHHHHCTHHHHHHHHHHHHH-TSHHHHGGGCCH-------CCHHHHHHHH---HHHHHHC---TSS
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHhCCh-------HHHHHHHHHH---HHHHHHH---hCC
Confidence 47999999999999999999999987 77766 579999999982 2223444322 1222221 222
Q ss_pred cCchhhHHHHHHHHHHHHhhCCCCCchHhHHHHHHHHHHHHHhcccC------hh-HHHHHHHHHHHHHHHHHHhhchh
Q 037487 78 KGKVTVADTTLKYLGSVHLKNGVLDPHFEVVKEALLRAIKEAVGEKW------RD-MNCTWVEAYDQLAAAIKAEMKEE 149 (151)
Q Consensus 78 ~~~l~~~~~~l~~Lg~~H~~~gv~~~~f~~~~~~ll~~l~~~lg~~~------~~-~~~AW~~~~~~i~~~i~~~~~~~ 149 (151)
+-+ +...+...++|..|.+.||+|.+|-..-..+...+.+.+.... .. +..||.|++..=...+..+|.++
T Consensus 78 ~~d-~~y~~~~~~iG~~H~~igl~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~k~~~ld~~l~~~~Y~~~ 155 (158)
T PF11563_consen 78 DFD-EEYVERRRRIGQVHARIGLPPRWYIGAYSFLREFLLEALAEEYRLDPEERADLLRALSKLLDLDLQLVIEAYIEA 155 (158)
T ss_dssp -CS-HHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHHHHHHHHS--SHHHHHHHHHHHHHHHHHHHHHHCHCCC-T
T ss_pred Cch-HHHHHHHHHHHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 222 3346777889999999999999998777777777766665544 23 67899999999888888877654
No 9
>cd00454 Trunc_globin Truncated hemoglobins (trHbs) are a family of oxygen-binding heme proteins found in cyanobacteria, eubacteria, unicellular eukaryotes, and plants. The truncated hemoglobins have a characteristic two-over-two alpha helical folding pattern that is distinct from the three-over-three pattern found in other globins. A subset of these have been demonstrated to form homodimers.
Probab=98.14 E-value=1.3e-05 Score=54.11 Aligned_cols=94 Identities=14% Similarity=0.075 Sum_probs=65.8
Q ss_pred hhhccccCCchhhcCccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHhhCCCCCchHh
Q 037487 27 CVSSPQIAPAAKGMFSFLRDSDGIPQNNPKLKAHAVKVFKMTCESAIQLREKGKVTVADTTLKYLGSVHLKNGVLDPHFE 106 (151)
Q Consensus 27 y~~lF~~~P~~~~~F~~~~~~~~~l~~~~~~~~H~~~v~~~l~~~i~~l~~~~~l~~~~~~l~~Lg~~H~~~gv~~~~f~ 106 (151)
|.++++ +|.++++|+.. . +..|..++..+++..+.+..... -+.+..+|.++||++++|+
T Consensus 20 Y~~i~~-dp~i~~~F~~~--------~---~~~~~~~~~~fl~~~~gg~~~y~--------g~~~~~~H~~~~I~~~~f~ 79 (116)
T cd00454 20 YARVAA-DPRLGPIFPAD--------D---LEEHRAKLADFLTQVLGGPGLYR--------GHPMLRRHLPFPITEEEFD 79 (116)
T ss_pred HHHHhc-ChHHHHhcCCc--------c---hHHHHHHHHHHHHHHcCCCCCCC--------CCChhhhhcCCCCCHHHHH
Confidence 999885 79999999873 1 22333344555655432222211 1123349999999999999
Q ss_pred HHHHHHHHHHHHHhcccChh-HHHHHHHHHHHHHHHHH
Q 037487 107 VVKEALLRAIKEAVGEKWRD-MNCTWVEAYDQLAAAIK 143 (151)
Q Consensus 107 ~~~~~ll~~l~~~lg~~~~~-~~~AW~~~~~~i~~~i~ 143 (151)
.+.++|..+|.+... .+ ..+.|...+..++..|.
T Consensus 80 ~~l~~l~~al~~~~~---~~~~~~~~~~~~~~~~~~~v 114 (116)
T cd00454 80 AWLELLRDALDELGV---PAELADALLARAERIADHMV 114 (116)
T ss_pred HHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHh
Confidence 999999999999854 34 78888888888877765
No 10
>PF01152 Bac_globin: Bacterial-like globin; InterPro: IPR001486 Globins are haem-containing proteins involved in binding and/or transporting oxygen. They belong to a very large and well studied family that is widely distributed in many organisms []. Globins have evolved from a common ancestor and can be divided into three groups: single-domain globins, and two types of chimeric globins, flavohaemoglobins and globin-coupled sensors. Bacteria have all three types of globins, while archaea lack flavohaemoglobins, and eukaryotes lack globin-coupled sensors []. Several functionally different haemoglobins can coexist in the same species. The major types of globins include: Haemoglobin (Hb): trimer of two alpha and two beta chains, although embryonic and foetal forms can substitute the alpha or beta chain for ones with higher oxygen affinity, such as gamma, delta, epsilon or zeta chains. Hb transports oxygen from lungs to other tissues in vertebrates []. Hb proteins are also present in unicellular organisms where they act as enzymes or sensors []. Myoglobin (Mb): monomeric protein responsible for oxygen storage in vertebrate muscle []. Neuroglobin: a myoglobin-like haemprotein expressed in vertebrate brain and retina, where it is involved in neuroprotection from damage due to hypoxia or ischemia []. Neuroglobin belongs to a branch of the globin family that diverged early in evolution. Cytoglobin: an oxygen sensor expressed in multiple tissues. Related to neuroglobin []. Erythrocruorin: highly cooperative extracellular respiratory proteins found in annelids and arthropods that are assembled from as many as 180 subunit into hexagonal bilayers []. Leghaemoglobin (legHb or symbiotic Hb): occurs in the root nodules of leguminous plants, where it facilitates the diffusion of oxygen to symbiotic bacteriods in order to promote nitrogen fixation. Non-symbiotic haemoglobin (NsHb): occurs in non-leguminous plants, and can be over-expressed in stressed plants []. Flavohaemoglobins (FHb): chimeric, with an N-terminal globin domain and a C-terminal ferredoxin reductase-like NAD/FAD-binding domain. FHb provides protection against nitric oxide via its C-terminal domain, which transfers electrons to haem in the globin []. Globin-coupled sensors: chimeric, with an N-terminal myoglobin-like domain and a C-terminal domain that resembles the cytoplasmic signalling domain of bacterial chemoreceptors. They bind oxygen, and act to initiate an aerotactic response or regulate gene expression [, ]. Protoglobin: a single domain globin found in archaea that is related to the N-terminal domain of globin-coupled sensors []. Truncated 2/2 globin: lack the first helix, giving them a 2-over-2 instead of the canonical 3-over-3 alpha-helical sandwich fold. Can be divided into three main groups (I, II and II) based on structural features []. This entry represents a group of haemoglobin-like proteins found in eubacteria, cyanobacteria, protozoa, algae and plants, but not in animals or yeast. These proteins have a truncated 2-over-2 rather than the canonical 3-over-3 alpha-helical sandwich fold []. This entry includes: HbN (or GlbN): a truncated haemoglobin-like protein that binds oxygen cooperatively with a very high affinity and a slow dissociation rate, which may exclude it from oxygen transport. It appears to be involved in bacterial nitric oxide detoxification and in nitrosative stress []. Cyanoglobin (or GlbN): a truncated haemoprotein found in cyanobacteria that has high oxygen affinity, and which appears to serve as part of a terminal oxidase, rather than as a respiratory pigment []. HbO (or GlbO): a truncated haemoglobin-like protein with a lower oxygen affinity than HbN. HbO associates with the bacterial cell membrane, where it significantly increases oxygen uptake over membranes lacking this protein. HbO appears to interact with a terminal oxidase, and could participate in an oxygen/electron-transfer process that facilitates oxygen transfer during aerobic metabolism []. Glb3: a nuclear-encoded truncated haemoglobin from plants that appears more closely related to HbO than HbN. Glb3 from Arabidopsis thaliana (Mouse-ear cress) exhibits an unusual concentration-independent binding of oxygen and carbon dioxide []. ; GO: 0019825 oxygen binding, 0015671 oxygen transport; PDB: 2BKM_B 1UVY_A 1DLW_A 2XYK_B 2IG3_A 2GKM_B 1S61_A 1S56_B 1RTE_B 2GLN_A ....
Probab=97.62 E-value=0.001 Score=45.05 Aligned_cols=95 Identities=18% Similarity=0.161 Sum_probs=64.5
Q ss_pred hhhccccCCchhhcCccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhcccCchhhHHHHHHH----HHHHHhhCCCCC
Q 037487 27 CVSSPQIAPAAKGMFSFLRDSDGIPQNNPKLKAHAVKVFKMTCESAIQLREKGKVTVADTTLKY----LGSVHLKNGVLD 102 (151)
Q Consensus 27 y~~lF~~~P~~~~~F~~~~~~~~~l~~~~~~~~H~~~v~~~l~~~i~~l~~~~~l~~~~~~l~~----Lg~~H~~~gv~~ 102 (151)
|.++++ +|.+.++|.. ..-++.+.|. ..+++.. +..|..- . -+. |...|.++++++
T Consensus 20 Y~rv~~-d~~l~~~F~~--------~d~~~~~~~~---~~fl~~~---~GGp~~Y---~--~~~G~p~m~~~H~~l~it~ 79 (120)
T PF01152_consen 20 YDRVLA-DPRLKPFFEG--------IDLEKHKEKQ---AEFLSQL---LGGPPLY---T--GRDGHPMMREAHAHLGITE 79 (120)
T ss_dssp HHHHHT--TTTGGGGTT--------SCHHHHHHHH---HHHHHHH---TTSSSHH---H--HHHSSH-HHHHHTTS-BBH
T ss_pred HHHHHc-CHHHHhhcCC--------CCHHHHHHHH---HHHHHHH---hCCCCCC---c--ccCCCchHHHHHhCCCCCH
Confidence 887774 7999999985 2223444443 4445443 5444321 1 234 788999999999
Q ss_pred chHhHHHHHHHHHHHHHhcccChh-HHHHHHHHHHHHHHHHHH
Q 037487 103 PHFEVVKEALLRAIKEAVGEKWRD-MNCTWVEAYDQLAAAIKA 144 (151)
Q Consensus 103 ~~f~~~~~~ll~~l~~~lg~~~~~-~~~AW~~~~~~i~~~i~~ 144 (151)
.+|+.+.+++..+|.+. | .++ ....+...+..+...|..
T Consensus 80 ~~f~~~~~~~~~al~~~-~--v~~~~~~~~~~~~~~~~~~i~n 119 (120)
T PF01152_consen 80 EHFDRWLELLKQALDEL-G--VPEELIDELLARLESLRDDIVN 119 (120)
T ss_dssp HHHHHHHHHHHHHHHHT-T--CTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-C--CCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999987 3 355 667777777777776653
No 11
>COG2346 Truncated hemoglobins [General function prediction only]
Probab=93.68 E-value=0.38 Score=33.51 Aligned_cols=100 Identities=14% Similarity=0.060 Sum_probs=62.3
Q ss_pred hhhccccCCchhhcCccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHhhCCCCCchHh
Q 037487 27 CVSSPQIAPAAKGMFSFLRDSDGIPQNNPKLKAHAVKVFKMTCESAIQLREKGKVTVADTTLKYLGSVHLKNGVLDPHFE 106 (151)
Q Consensus 27 y~~lF~~~P~~~~~F~~~~~~~~~l~~~~~~~~H~~~v~~~l~~~i~~l~~~~~l~~~~~~l~~Lg~~H~~~gv~~~~f~ 106 (151)
|.+.- ++|.+.++|+. +++ .+-++.+ .+|...-.+...-..- --=..|-.+|..+|+++++|+
T Consensus 27 Y~rV~-~d~~l~piF~~--dl~---~~~~k~~-------afl~~f~gGp~~y~e~----~ghp~lr~~h~~~~it~~~~d 89 (133)
T COG2346 27 YERVL-EDPRLGPIFPA--DLA---GTWPKQK-------AFLTQFWGGPPLYTER----YGHPPLRARHLPFGITPEEFD 89 (133)
T ss_pred HHHHh-cCccccccCCC--ccc---cchHHHH-------HHHHHHhcCCcccccc----cCCccHHHHccCCCCCHHHHH
Confidence 66555 68999999994 544 2333443 2333332221111100 000225578889999999999
Q ss_pred HHHHHHHHHHHHHhcccChh-HHHHHHHHHHHHHHHHHHhh
Q 037487 107 VVKEALLRAIKEAVGEKWRD-MNCTWVEAYDQLAAAIKAEM 146 (151)
Q Consensus 107 ~~~~~ll~~l~~~lg~~~~~-~~~AW~~~~~~i~~~i~~~~ 146 (151)
.+-.||-.++.+.. .++ .+..--.....++..|....
T Consensus 90 ~WL~~~~~al~ei~---~~~e~~~~i~~~~~~~A~~~~n~~ 127 (133)
T COG2346 90 AWLGLFADALDEIG---LPEELREEILARAERIAHHMVNSL 127 (133)
T ss_pred HHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHHHHHHccc
Confidence 99999999999984 355 55555566667777766543
No 12
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=72.45 E-value=25 Score=23.23 Aligned_cols=81 Identities=14% Similarity=0.230 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHhhCCCCCchHhHHHHHHHHHHHHHhcc-cChh-HHHHHHH
Q 037487 56 KLKAHAVKVFKMTCESAIQLREKGKVTVADTTLKYLGSVHLKNGVLDPHFEVVKEALLRAIKEAVGE-KWRD-MNCTWVE 133 (151)
Q Consensus 56 ~~~~H~~~v~~~l~~~i~~l~~~~~l~~~~~~l~~Lg~~H~~~gv~~~~f~~~~~~ll~~l~~~lg~-~~~~-~~~AW~~ 133 (151)
-++.|...+++.+++.+..+........-...++.++.- ..+...+...+..-++.+|+..+.. ++.. +-++|..
T Consensus 4 fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~l---I~~~~~~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~ 80 (107)
T PF08064_consen 4 FLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEEL---IKLGGSHISSARPQIMACLQSALEIPELREEALSCWNC 80 (107)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHH
Confidence 366777778888877654322222221112222222221 1244455566666677788887763 4667 8899988
Q ss_pred HHHHHH
Q 037487 134 AYDQLA 139 (151)
Q Consensus 134 ~~~~i~ 139 (151)
+...+.
T Consensus 81 fi~~L~ 86 (107)
T PF08064_consen 81 FIKTLD 86 (107)
T ss_pred HHHHCC
Confidence 766543
No 13
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=70.89 E-value=5.5 Score=25.27 Aligned_cols=40 Identities=10% Similarity=0.189 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHHHHHHHHhcchhhh-----hhhccccCCchhhcC
Q 037487 2 VFTEKQEALVNESWEILKEISHKIA-----CVSSPQIAPAAKGMF 41 (151)
Q Consensus 2 ~Lt~~e~~~i~~SW~~v~~~~~~~~-----y~~lF~~~P~~~~~F 41 (151)
++|++++..|++.|..+......+- ....+..+|+++.+-
T Consensus 27 Gfs~~~i~~l~~ayr~l~~~~~~~~~a~~~l~~~~~~~~~v~~~~ 71 (83)
T PF13720_consen 27 GFSKEEISALRRAYRILFRSGLTLEEALEELEEEYPDSPEVREIV 71 (83)
T ss_dssp TS-HHHHHHHHHHHHHHHTSSS-HHHHHHHHHHHTTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCHHHHHHH
Confidence 6899999999999999987654433 333333455554443
No 14
>PF07742 BTG: BTG family; InterPro: IPR002087 Anti-proliferative proteins have been shown to include mammalian and avian protein BTG1 (which appears to be involved in negative regulation of cell proliferation) and rat/mouse NGF-inducible protein PC3/TIS21 (BTG2) [, , ]. These proteins have from 158 to 363 amino acid residues, that are highly similar and include 3 conserved cysteine residues. BTG2 seems to have a signal sequence; while the other proteins may lack such a domain. The sequence of the N-terminal half of these proteins is well conserved.; PDB: 3DJU_B 3E9V_A 2Z15_D 2D5R_B 3DJN_B.
Probab=70.27 E-value=9 Score=26.07 Aligned_cols=40 Identities=15% Similarity=0.071 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhhCCCCCchHhHHHHHHHHHHHHHhcccChh
Q 037487 85 DTTLKYLGSVHLKNGVLDPHFEVVKEALLRAIKEAVGEKWRD 126 (151)
Q Consensus 85 ~~~l~~Lg~~H~~~gv~~~~f~~~~~~ll~~l~~~lg~~~~~ 126 (151)
..+|..+-..|.+ ++++..+.|++.|...|.+.+.++|.|
T Consensus 9 v~Fl~~~l~~~~~--l~~~~~~~F~~~L~~~L~~ry~~HW~P 48 (118)
T PF07742_consen 9 VNFLTRLLYNKGR--LPRRQVDRFAEELENLLCERYKGHWYP 48 (118)
T ss_dssp HHHHHHHHHHHC---B-HHHHHHHHHHHHHHHHHHHTTS--T
T ss_pred HHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4556666655544 888999999999999999999988876
No 15
>PF00502 Phycobilisome: Phycobilisome protein; InterPro: IPR012128 Cyanobacteria and red algae harvest light through water-soluble complexes, called phycobilisomes, which are attached to the outer face of the thylakoid membrane []. These complexes are capable of transferring the absorbed energy to the photosynthetic reaction centre with greater than 95% efficiency. Phycobilisomes contain various photosynthetic light harvesting proteins known as biliproteins, and linker proteins which help assemble the structure. The two main structural elements of the complex are a core located near the photosynthetic reaction centre, and rods attached to this core. Allophycocyanin is the major component of the core, while the rods contain phycocyanins, phycoerythrins and linker proteins. The rod biliproteins harvest photons, with the excitation energy being passed through the rods into the allophycocyanin in the core. Other core biliproteins subsequently pass this energy to chlorophyll within the thylakoid membrane. This entry represents the alpha and beta subunits found in biliproteins from cyanobacteria and red algae. Structural studies indicate that the basic structural unit of most biliproteins is a heterodimer composed of these alpha and beta subunits [, , , ]. The full protein is a ring-like trimer assembly of these heterodimers. Each subunit of the heterodimer has eight helices and binds chromophores through thioester bonds formed at particular cysteine residues. These chromophores, also known as bilins, are open-chain tetrapyrroles whose number and type vary with the particular biliprotein eg R-phyocerythrin binds five phycoerythrobilins per heterodimer, while allophycocyanin binds two phycocyanobilins per heterodimer.; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2VML_I 2VJR_A 1KTP_B 3L0F_B 1JBO_B 3KVS_B 1PHN_B 3BRP_B 2C7K_B 2C7L_B ....
Probab=67.40 E-value=42 Score=23.80 Aligned_cols=124 Identities=10% Similarity=0.083 Sum_probs=61.4
Q ss_pred CCHHHHHHHHHHHH----------HHHhcchhhh---hhhccccCCchhhcCccCCCCCCCCCCChHHHHHHHH----HH
Q 037487 3 FTEKQEALVNESWE----------ILKEISHKIA---CVSSPQIAPAAKGMFSFLRDSDGIPQNNPKLKAHAVK----VF 65 (151)
Q Consensus 3 Lt~~e~~~i~~SW~----------~v~~~~~~~~---y~~lF~~~P~~~~~F~~~~~~~~~l~~~~~~~~H~~~----v~ 65 (151)
||+.|.+.|+.-.. .+..+...+. -.++|+++|++...=.. ...++-.+-+.| ++
T Consensus 14 ls~~EL~~l~~~~~~~~~Rl~aa~~L~~~a~~IV~~A~~~l~~~~P~l~~~gg~--------~y~~~~~~~C~RD~~~~L 85 (157)
T PF00502_consen 14 LSDGELQALKGYFQSANARLEAAEKLRDNASEIVDQAAQKLFEKYPDLTQPGGN--------LYPSRRREACWRDIWHYL 85 (157)
T ss_dssp CEHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSGGGGSTTST--------TSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccccccc--------ccchHHHHHHHHHHHHHH
Confidence 57778888775543 3333444443 88899999987652111 112222222222 44
Q ss_pred HHHHHHHHHhcccCchhhHHHH-HHHHHHHHhhCCCCCchHhHHHHHHHHHHHHHhcccChh-HHHHHHHHHHHHHHHH
Q 037487 66 KMTCESAIQLREKGKVTVADTT-LKYLGSVHLKNGVLDPHFEVVKEALLRAIKEAVGEKWRD-MNCTWVEAYDQLAAAI 142 (151)
Q Consensus 66 ~~l~~~i~~l~~~~~l~~~~~~-l~~Lg~~H~~~gv~~~~f~~~~~~ll~~l~~~lg~~~~~-~~~AW~~~~~~i~~~i 142 (151)
..+..++. .++++-+ .+. |.-+-..-..+||+...+-.--.+|-+...+.+ ++ ..+.-...++++++.|
T Consensus 86 R~i~ya~l-~gd~~~l---~~~~l~~l~ei~~al~vp~~~~v~al~~lk~~~~~~l----~~e~~~~~~~yfD~~i~~l 156 (157)
T PF00502_consen 86 RYITYAML-AGDTDPL---DERGLNGLREIYRALGVPIDAYVEALQCLKEAALQLL----SPEAAAEIAPYFDYLINAL 156 (157)
T ss_dssp HHHHHHHH-HTSSHHH---HHHTTTTHHHHHHHHT--HHHHHHHHHHHHHHHHHHH----THHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hcchhHH---HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHc----CHHHHHHHHHHHHHHHHHC
Confidence 44444331 3443322 222 222333334567776654443444444444444 45 6777778888887765
No 16
>PF14361 RsbRD_N: RsbT co-antagonist protein rsbRD N-terminal domain
Probab=65.49 E-value=35 Score=22.25 Aligned_cols=66 Identities=15% Similarity=0.078 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh---cccCchhhHHHHHHHHHHHHhhCCCCCchHhHHHHHHHHHHHHHhcc
Q 037487 56 KLKAHAVKVFKMTCESAIQL---REKGKVTVADTTLKYLGSVHLKNGVLDPHFEVVKEALLRAIKEAVGE 122 (151)
Q Consensus 56 ~~~~H~~~v~~~l~~~i~~l---~~~~~l~~~~~~l~~Lg~~H~~~gv~~~~f~~~~~~ll~~l~~~lg~ 122 (151)
.+..++.-|+..+...+... ..++ .+.+.+.|..+++.=..-|++|..=-.|.-+|=..|.+.++.
T Consensus 36 el~~~~~~v~~~l~~~l~~~~d~~~~~-~~~l~~~L~~lsr~RA~Qgftpseta~fvf~LK~~l~~~l~~ 104 (105)
T PF14361_consen 36 ELRQFANPVLDALAAALESGLDLAAPE-WEELREALEELSRIRAVQGFTPSETASFVFALKRPLFERLQR 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccc-hHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 34555555666666655332 1212 244588899999888889999998777777777777666653
No 17
>TIGR02019 BchJ bacteriochlorophyll 4-vinyl reductase. This model represents the component of bacteriochlorophyll synthetase responsible for reduction of the B-ring pendant ethylene (4-vinyl) group. It appears that this step must precede the reduction of ring D, at least by the "dark" protochlorophyllide reductase enzymes BchN, BchB and BchL. This family appears to be present in photosynthetic bacteria except for the cyanobacterial clade. Cyanobacteria must use a non-orthologous gene to carry out this required step for the biosynthesis of both bacteriochlorophyll and chlorophyll.
Probab=64.25 E-value=49 Score=24.42 Aligned_cols=72 Identities=21% Similarity=0.182 Sum_probs=44.6
Q ss_pred hcccCchhhHHHHHHHHHHHHhhCCCCCchH-hHHHHHHHHHHHHHhcccCh-h-HHHHHHHHHHHH-HHHHHHhh
Q 037487 75 LREKGKVTVADTTLKYLGSVHLKNGVLDPHF-EVVKEALLRAIKEAVGEKWR-D-MNCTWVEAYDQL-AAAIKAEM 146 (151)
Q Consensus 75 l~~~~~l~~~~~~l~~Lg~~H~~~gv~~~~f-~~~~~~ll~~l~~~lg~~~~-~-~~~AW~~~~~~i-~~~i~~~~ 146 (151)
|+....-+.....++..|..|.--..+.++. +....+|..+|++.+|++-+ . ..++=....+++ ++-|-..+
T Consensus 14 l~~~~g~~~~~~~~~~~g~~~~~~~~p~~mv~E~~~~aL~~aL~~elG~~aa~~vl~~~G~~ta~y~l~~rIp~~~ 89 (188)
T TIGR02019 14 LEAAYGPGAADRALAAAGQGVLRPGPPSGMLPESQFSTLHRWLRDTLGETAAARLLRESGLATADYILANRIPPPA 89 (188)
T ss_pred HHHhcCHHHHHHHHHHcCcccccCCCchhcCCHHHHHHHHHHHHHHhCHHHHHHHHHHHhHHHHHHHHHHHhhHHH
Confidence 4444333455777899998885444444443 45778899999999996323 3 555555666666 55444433
No 18
>smart00099 btg1 tob/btg1 family. The tob/btg1 is a family of proteins that inhibit cell proliferation.
Probab=64.16 E-value=15 Score=24.58 Aligned_cols=40 Identities=23% Similarity=0.268 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhhCCCCCchHhHHHHHHHHHHHHHhcccChh
Q 037487 85 DTTLKYLGSVHLKNGVLDPHFEVVKEALLRAIKEAVGEKWRD 126 (151)
Q Consensus 85 ~~~l~~Lg~~H~~~gv~~~~f~~~~~~ll~~l~~~lg~~~~~ 126 (151)
..++..+-+.|. .+++...+.|++.|-..|.+.+..+|.|
T Consensus 9 v~Fl~~~l~~~~--~l~~~~v~~F~~~L~~~L~~~y~~HWyP 48 (108)
T smart00099 9 VNFITSLLRKHN--KLSKRRVEIFAEKLTRLLKEKYKNHWYP 48 (108)
T ss_pred HHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 444555554443 3888999999999999999999888875
No 19
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=56.70 E-value=17 Score=22.75 Aligned_cols=21 Identities=19% Similarity=0.199 Sum_probs=14.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhc
Q 037487 1 MVFTEKQEALVNESWEILKEI 21 (151)
Q Consensus 1 m~Lt~~e~~~i~~SW~~v~~~ 21 (151)
|+||++|+..+++-=..+..+
T Consensus 1 M~LSe~E~r~L~eiEr~L~~~ 21 (82)
T PF11239_consen 1 MPLSEHEQRRLEEIERQLRAD 21 (82)
T ss_pred CCCCHHHHHHHHHHHHHHHhc
Confidence 899999998777544444333
No 20
>PF05427 FIBP: Acidic fibroblast growth factor binding (FIBP) ; InterPro: IPR008614 Acidic fibroblast growth factor (aFGF) intracellular binding protein (FIBP) is a protein found mainly in the nucleus that is thought to be involved in the intracellular function of aFGF [].; GO: 0017134 fibroblast growth factor binding
Probab=56.13 E-value=1.1e+02 Score=24.99 Aligned_cols=87 Identities=6% Similarity=0.029 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHhcccCchh-hHHHHHHHHHHHHhhCCCCCchHhHHHHHHHHHHHHHhcccChh-HHHHHHHHHHH
Q 037487 60 HAVKVFKMTCESAIQLREKGKVT-VADTTLKYLGSVHLKNGVLDPHFEVVKEALLRAIKEAVGEKWRD-MNCTWVEAYDQ 137 (151)
Q Consensus 60 H~~~v~~~l~~~i~~l~~~~~l~-~~~~~l~~Lg~~H~~~gv~~~~f~~~~~~ll~~l~~~lg~~~~~-~~~AW~~~~~~ 137 (151)
+...+..++..+..+|..+-++. -+.+.++++..-=+.-|.+.++.+.|-.++..+..+.-.. -.+ +...|...+++
T Consensus 272 nFK~l~Ralv~Ia~gLs~sKElRdlF~DLvEK~IEPlr~~~Wt~~dl~~FL~ay~~s~~~l~~~-r~~~l~~~W~RYm~v 350 (361)
T PF05427_consen 272 NFKSLSRALVNIASGLSHSKELRDLFEDLVEKFIEPLRQAGWTKEDLRLFLSAYTESALDLDVF-RHQRLQSVWERYMKV 350 (361)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhHHHHHCCCCHHHHHHHHHHHHHHHHhCCcc-chHhHHHHHHHHHHH
Confidence 33345555555555676666652 1222234444333457889999999999999987665221 225 88999999999
Q ss_pred HHHHHHHhhc
Q 037487 138 LAAAIKAEMK 147 (151)
Q Consensus 138 i~~~i~~~~~ 147 (151)
+..-+..-|.
T Consensus 351 i~~Cll~mYh 360 (361)
T PF05427_consen 351 IRNCLLKMYH 360 (361)
T ss_pred HHHHHHHHhc
Confidence 9887776553
No 21
>cd07922 CarBa CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. 2-aminophenol 1,6-dioxygenase is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, composed of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, the enzyme has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=54.60 E-value=13 Score=23.53 Aligned_cols=37 Identities=16% Similarity=0.104 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHH-HHHHHHhcchhhh--hhhccccCCchh
Q 037487 2 VFTEKQEALVNE-SWEILKEISHKIA--CVSSPQIAPAAK 38 (151)
Q Consensus 2 ~Lt~~e~~~i~~-SW~~v~~~~~~~~--y~~lF~~~P~~~ 38 (151)
+||++|+++|++ .|..+..-+...- +.-++-.+|+.-
T Consensus 35 gLt~eE~~aL~~~D~~~L~~lGvhp~L~mh~~~~~np~~~ 74 (81)
T cd07922 35 GLTPAERAALREGTFGALTSIGVHPILQMHYLMYTNPEMA 74 (81)
T ss_pred CCCHHHHHHHHccCHHHHHHcCCCHHHHHHHHHHcCcccc
Confidence 689999999885 5777765544333 666677788753
No 22
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=53.97 E-value=1e+02 Score=28.27 Aligned_cols=91 Identities=10% Similarity=0.181 Sum_probs=57.4
Q ss_pred CCChHHHHHHH-HHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHhh---CCCCCchHhHHHHHHHHHHHHHhcccChhH
Q 037487 52 QNNPKLKAHAV-KVFKMTCESAIQLREKGKVTVADTTLKYLGSVHLK---NGVLDPHFEVVKEALLRAIKEAVGEKWRDM 127 (151)
Q Consensus 52 ~~~~~~~~H~~-~v~~~l~~~i~~l~~~~~l~~~~~~l~~Lg~~H~~---~gv~~~~f~~~~~~ll~~l~~~lg~~~~~~ 127 (151)
..|++|.-.+. |++.+..+.|.+++. +.+.+.+.++-..+.- ..++.+.+..+.......+++..|..|.
T Consensus 128 tg~~~fa~d~yrRfiq~~~~vv~gi~~----~~fe~~~~~~k~~~~~~~~~~l~~~~l~~l~~~~k~~~~~~~g~~fp-- 201 (879)
T PRK09279 128 TGNERFAYDSYRRFIQMFGDVVLGIDH----ELFEEILEELKEKKGVKLDTDLTAEDLKELVERYKEIVKEETGKPFP-- 201 (879)
T ss_pred cCChhHHHHHHHHHHHHHHHHHcCCCh----HHHHHHHHHHHHHcCCCCccCCCHHHHHHHHHHHHHHHHHHhCCCCC--
Confidence 55778887766 577777777666643 2235555555444321 3467788888888888888888887773
Q ss_pred HHHHHHHHHHHHHHHHHhhch
Q 037487 128 NCTWVEAYDQLAAAIKAEMKE 148 (151)
Q Consensus 128 ~~AW~~~~~~i~~~i~~~~~~ 148 (151)
+..|..+...|..+...-+.+
T Consensus 202 ~dp~~QL~~AI~aV~~S~~s~ 222 (879)
T PRK09279 202 QDPYEQLWGAIGAVFRSWNNP 222 (879)
T ss_pred CChHHHHHHHHHHHHHhhcCh
Confidence 444555666666655544433
No 23
>PF08557 Lipid_DES: Sphingolipid Delta4-desaturase (DES); InterPro: IPR013866 Sphingolipids are important membrane signalling molecules involved in many different cellular functions in eukaryotes. Sphingolipid delta 4-desaturase catalyses the formation of (E)-sphing-4-enine []. Some proteins in this entry have bifunctional delta 4-desaturase/C-4-hydroxylase activity. Delta 4-desaturated sphingolipids may play a role in early signalling required for entry into meiotic and spermatid differentiation pathways during Drosophila spermatogenesis []. This small protein associates with FA_desaturase IPR005804 from INTERPRO and appears to be specific to sphingolipid delta 4-desaturase. ; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=53.15 E-value=4 Score=22.23 Aligned_cols=17 Identities=12% Similarity=0.016 Sum_probs=14.3
Q ss_pred hhhccccCCchhhcCcc
Q 037487 27 CVSSPQIAPAAKGMFSF 43 (151)
Q Consensus 27 y~~lF~~~P~~~~~F~~ 43 (151)
=..++++||+++.+|..
T Consensus 19 Rk~IL~k~PeIk~L~G~ 35 (39)
T PF08557_consen 19 RKEILKKHPEIKKLMGP 35 (39)
T ss_pred HHHHHHhChHHHHHhCC
Confidence 45678999999999986
No 24
>PHA02943 hypothetical protein; Provisional
Probab=51.90 E-value=23 Score=25.41 Aligned_cols=40 Identities=13% Similarity=0.133 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhcchhhh----hhhccccCCchhhcCccCCCC
Q 037487 8 EALVNESWEILKEISHKIA----CVSSPQIAPAAKGMFSFLRDS 47 (151)
Q Consensus 8 ~~~i~~SW~~v~~~~~~~~----y~~lF~~~P~~~~~F~~~~~~ 47 (151)
.+.+|+-|..++.+.-.+- ..+|..++|+..++|...-+.
T Consensus 77 ~~~~Relwrlv~s~~~kfi~p~~l~~li~kd~~a~~~~ak~v~v 120 (165)
T PHA02943 77 FEIKRELWRLVCNSRLKFITPSRLLRLIAKDTEAHNIFAKYVPV 120 (165)
T ss_pred HHHHHHHHHHHHhccccccChHHHHHHHHhCHHHHHHHHHhcCc
Confidence 4578899999988866654 888999999999999986443
No 25
>PF04444 Dioxygenase_N: Catechol dioxygenase N terminus; InterPro: IPR007535 This domain is the N-terminal region of catechol, chlorocatechol or hydroxyquinol 1,2-dioxygenase proteins. This region is always found adjacent to the dioxygenase domain (IPR000627 from INTERPRO). Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0005506 iron ion binding, 0018576 catechol 1,2-dioxygenase activity, 0009712 catechol-containing compound metabolic process, 0055114 oxidation-reduction process; PDB: 3O6R_B 1S9A_A 3O6J_A 3O5U_B 3O32_B 3HHY_A 3HHX_A 3HJS_A 3HJQ_A 3HKP_A ....
Probab=45.26 E-value=73 Score=19.73 Aligned_cols=54 Identities=17% Similarity=0.268 Sum_probs=33.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhc-ccCchhhHHHHHHHHHHHHhhCCCCCchHhHHHHHH-HHH
Q 037487 54 NPKLKAHAVKVFKMTCESAIQLR-EKGKVTVADTTLKYLGSVHLKNGVLDPHFEVVKEAL-LRA 115 (151)
Q Consensus 54 ~~~~~~H~~~v~~~l~~~i~~l~-~~~~l~~~~~~l~~Lg~~H~~~gv~~~~f~~~~~~l-l~~ 115 (151)
||+++.=..+++..+..+|...+ .+++......+|.++|+ ...|..+.++| ++.
T Consensus 1 d~R~~~i~~~lv~~lh~~i~e~~lT~~E~~~av~~L~~~G~--------~~E~~Ll~DvlGle~ 56 (74)
T PF04444_consen 1 DPRLKEIMARLVRHLHDFIREVDLTEDEWWAAVDFLNRVGQ--------RNEFILLSDVLGLEH 56 (74)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHH--------TTHHHHHHHHTTHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC--------CCchhhhhhhhccch
Confidence 46666555556666666654332 12234455788888887 56677777777 655
No 26
>PF08897 DUF1841: Domain of unknown function (DUF1841); InterPro: IPR014993 This group of proteins are functionally uncharacterised.
Probab=41.49 E-value=1.2e+02 Score=21.21 Aligned_cols=106 Identities=11% Similarity=0.129 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHhcchhhh----hhhccccCCchhhcCccC-----CCCCC-CCCCChHHHHHHHHHHHHHHHHHHHh
Q 037487 6 KQEALVNESWEILKEISHKIA----CVSSPQIAPAAKGMFSFL-----RDSDG-IPQNNPKLKAHAVKVFKMTCESAIQL 75 (151)
Q Consensus 6 ~e~~~i~~SW~~v~~~~~~~~----y~~lF~~~P~~~~~F~~~-----~~~~~-~l~~~~~~~~H~~~v~~~l~~~i~~l 75 (151)
+-++..-++|.+-.....-.+ -..+...||||-.++..- ++... .-..||-+. .. +--+|.+=+ ++
T Consensus 5 ~~R~ff~~~w~K~~~~~~L~~lE~~a~~~i~~HPEYh~~l~~~e~~l~~dy~pe~G~tNPFLH--ls-mHLsI~EQ~-si 80 (137)
T PF08897_consen 5 QVRRFFCDAWRKYRAGEPLTPLEQIAADVIEEHPEYHALLDDPERALARDYSPEQGETNPFLH--LS-MHLSIQEQL-SI 80 (137)
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCcchHHHHhCHHHHhhccCCcccCccchhHH--HH-HHHHHHHHH-hc
Confidence 446677889999877755444 667788899999988742 12221 225677432 21 111222211 35
Q ss_pred cccCchhhHHHHHHHHHHHHhhC-CCCCchHhHHHHHHHHHHHH
Q 037487 76 REKGKVTVADTTLKYLGSVHLKN-GVLDPHFEVVKEALLRAIKE 118 (151)
Q Consensus 76 ~~~~~l~~~~~~l~~Lg~~H~~~-gv~~~~f~~~~~~ll~~l~~ 118 (151)
|.|..+ ......|..+.... ...-...+.+++.|..+-+.
T Consensus 81 dqP~GI---r~a~~~L~~r~~~~h~A~H~~mecL~e~iW~aQR~ 121 (137)
T PF08897_consen 81 DQPPGI---RAAYERLAARGGDRHEAEHAMMECLAEMIWEAQRN 121 (137)
T ss_pred cCChHH---HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 665554 66677776663221 12222345555555555554
No 27
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=41.00 E-value=1.1e+02 Score=20.37 Aligned_cols=81 Identities=14% Similarity=0.193 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHhhCCCCCchHhHHHHHHHHHHHHHhc-ccChh-HHHHHHH
Q 037487 56 KLKAHAVKVFKMTCESAIQLREKGKVTVADTTLKYLGSVHLKNGVLDPHFEVVKEALLRAIKEAVG-EKWRD-MNCTWVE 133 (151)
Q Consensus 56 ~~~~H~~~v~~~l~~~i~~l~~~~~l~~~~~~l~~Lg~~H~~~gv~~~~f~~~~~~ll~~l~~~lg-~~~~~-~~~AW~~ 133 (151)
-++.|...+++.+++.+.+.+..-....-...++.++.-=. +-..+...+..-+...|+..+. +++-. .-.+|..
T Consensus 4 fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~---~~g~~i~~a~pQI~acL~saL~~~eL~~~al~~W~~ 80 (107)
T smart00802 4 FLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIK---LMGKHISSALPQIMACLQSALEIPELRSLALRCWHV 80 (107)
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 35677777888887764333210012111222222222111 1113333444444445555554 34666 7788987
Q ss_pred HHHHHH
Q 037487 134 AYDQLA 139 (151)
Q Consensus 134 ~~~~i~ 139 (151)
+...+.
T Consensus 81 ~i~~L~ 86 (107)
T smart00802 81 LIKTLK 86 (107)
T ss_pred HHHhCC
Confidence 765543
No 28
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=40.34 E-value=96 Score=19.63 Aligned_cols=54 Identities=24% Similarity=0.236 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhcccCchhhHHHHHHHHHHHHhhCCCCCchHhHHHHHHHHHHHHH
Q 037487 64 VFKMTCESAIQLREKGKVTVADTTLKYLGSVHLKNGVLDPHFEVVKEALLRAIKEA 119 (151)
Q Consensus 64 v~~~l~~~i~~l~~~~~l~~~~~~l~~Lg~~H~~~gv~~~~f~~~~~~ll~~l~~~ 119 (151)
.-..|+.+|..|...+.....+..+..|.+.+- |+.+.--+.+-.+|-.-+++.
T Consensus 12 L~EvlC~~I~dln~~~~~at~E~l~~~L~~~yp--~i~~Ps~e~l~~~L~~Li~er 65 (80)
T PF10264_consen 12 LPEVLCWVISDLNAAGQPATQETLREHLRKHYP--GIAIPSQEVLYNTLGTLIKER 65 (80)
T ss_pred HHHHHHHHHHHHhccCCcchHHHHHHHHHHhCC--CCCCCCHHHHHHHHHHHHHcC
Confidence 345667767667766655444555666665444 676666688888777777663
No 29
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=40.31 E-value=1.7e+02 Score=22.54 Aligned_cols=59 Identities=5% Similarity=0.089 Sum_probs=37.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhc-ccCchhhHHHHHHHHHHHHhhCCCCCchHhHHHHHHHHHHHHHh
Q 037487 54 NPKLKAHAVKVFKMTCESAIQLR-EKGKVTVADTTLKYLGSVHLKNGVLDPHFEVVKEALLRAIKEAV 120 (151)
Q Consensus 54 ~~~~~~H~~~v~~~l~~~i~~l~-~~~~l~~~~~~l~~Lg~~H~~~gv~~~~f~~~~~~ll~~l~~~l 120 (151)
||+++.=..+++..|-++|...+ ..++.....++|.++|+ ...|-.+.++|+..+-+.+
T Consensus 1 ~~R~~~i~~~lv~hlh~f~re~~lt~~E~~~~i~~l~~~G~--------~~E~~Llsdvl~~~~vd~~ 60 (246)
T TIGR02465 1 NNRVKEVVDDIVEAVRDVLVRHEVTFDEYRTGVQYLMKVAE--------AGETPLLLDVFFNSTIDEI 60 (246)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--------cCcHHHHHHHHHHHHHHHH
Confidence 45666544555566666554332 12334566788999998 3567888888877776655
No 30
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=39.88 E-value=1.5e+02 Score=23.99 Aligned_cols=51 Identities=14% Similarity=0.384 Sum_probs=35.0
Q ss_pred HhcccCchhhHHHHH-HHHHHHHhhCCCCCchHhHHHHHHHHHHHHHhcccCh
Q 037487 74 QLREKGKVTVADTTL-KYLGSVHLKNGVLDPHFEVVKEALLRAIKEAVGEKWR 125 (151)
Q Consensus 74 ~l~~~~~l~~~~~~l-~~Lg~~H~~~gv~~~~f~~~~~~ll~~l~~~lg~~~~ 125 (151)
.|+.+.+... .+.+ +.++.--.+|+++.+.|+.|-...++......|.+|+
T Consensus 29 aLEse~E~~~-r~~l~~~~~~~~~kyn~s~~d~r~~er~i~~s~ph~ag~qWk 80 (350)
T KOG4404|consen 29 ALESENEARE-RERLERRLANLKRKYNLSEEDYRELERVILKSEPHKAGPQWK 80 (350)
T ss_pred HhcCcchHHH-HHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCccccccccc
Confidence 3555444322 2223 2333334569999999999999999999998888875
No 31
>KOG2344 consensus Exocyst component protein and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.19 E-value=1.4e+02 Score=26.22 Aligned_cols=79 Identities=18% Similarity=0.267 Sum_probs=40.3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHhhCCCCCchHhHHHHHHHHHHHHHhcccC-------
Q 037487 52 QNNPKLKAHAVKVFKMTCESAIQLREKGKVTVADTTLKYLGSVHLKNGVLDPHFEVVKEALLRAIKEAVGEKW------- 124 (151)
Q Consensus 52 ~~~~~~~~H~~~v~~~l~~~i~~l~~~~~l~~~~~~l~~Lg~~H~~~gv~~~~f~~~~~~ll~~l~~~lg~~~------- 124 (151)
.++..+..|..++|..+... |+.... ..++.+-.|.- -..-.+| ....+----|+..+|++|
T Consensus 429 ~~~s~l~~~~~~ii~~L~~n---Ld~Ks~------~Y~D~aL~~lF-lmNN~~y-iv~kvkss~L~~llGd~wl~kh~~~ 497 (623)
T KOG2344|consen 429 SSNSLLAVHIARIILALECN---LDTKSK------LYKDPALSYLF-LMNNLHY-IVQKVKSSELRLLLGDDWLRKHEEK 497 (623)
T ss_pred ccccHHHHHHHHHHHHHHhh---hHHHHh------hccchhhHHHH-HHhhHHH-HHHHHhcchHHHHhchHHHHHHHHH
Confidence 34567888988888877553 443322 23333334421 1111111 111111123455566655
Q ss_pred -----hh-HHHHHHHHHHHHHHH
Q 037487 125 -----RD-MNCTWVEAYDQLAAA 141 (151)
Q Consensus 125 -----~~-~~~AW~~~~~~i~~~ 141 (151)
+. .+.+|.+++..+.+.
T Consensus 498 ~~qy~~~Y~r~sW~~vl~~L~~~ 520 (623)
T KOG2344|consen 498 LRQYATSYERESWGKVLSLLTDE 520 (623)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Confidence 33 467999998887653
No 32
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=37.40 E-value=1e+02 Score=24.27 Aligned_cols=57 Identities=14% Similarity=0.142 Sum_probs=36.1
Q ss_pred hhhcCccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhcc-cCchhhHHHHHHHHHHH
Q 037487 37 AKGMFSFLRDSDGIPQNNPKLKAHAVKVFKMTCESAIQLRE-KGKVTVADTTLKYLGSV 94 (151)
Q Consensus 37 ~~~~F~~~~~~~~~l~~~~~~~~H~~~v~~~l~~~i~~l~~-~~~l~~~~~~l~~Lg~~ 94 (151)
++.++.++...+.. ..+|+++.=..+++..+-.+|...+- .++.....++|.++|++
T Consensus 2 ~~~~~~~~~~~~~~-~~~~R~~~i~~~lv~hlh~~~re~~lt~~E~~~~i~~l~~~G~r 59 (282)
T cd03460 2 VQALLKAAAGLDTA-GGNPRVKQIVHRLLSDLFKAIDDLDITPDEFWSGVDYLNDLGQA 59 (282)
T ss_pred HHHHHHHhhcccCC-CCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhc
Confidence 34455555444433 57899998776777777777654332 23345667889999983
No 33
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=35.50 E-value=2.2e+02 Score=22.43 Aligned_cols=62 Identities=16% Similarity=0.202 Sum_probs=43.0
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHhcc-cCchhhHHHHHHHHHHHHhhCCCCCchHhHHHHHHHHHHHHHhc
Q 037487 52 QNNPKLKAHAVKVFKMTCESAIQLRE-KGKVTVADTTLKYLGSVHLKNGVLDPHFEVVKEALLRAIKEAVG 121 (151)
Q Consensus 52 ~~~~~~~~H~~~v~~~l~~~i~~l~~-~~~l~~~~~~l~~Lg~~H~~~gv~~~~f~~~~~~ll~~l~~~lg 121 (151)
..+|+++.=..+++..|-++|...+- .++.....++|.++|+ ...|-.+.++|++.+-+.+.
T Consensus 30 ~~~~R~~~i~~~lv~hlh~f~re~~lT~~E~~~~i~fL~~~G~--------~~E~~LlsDvl~~~lvd~~~ 92 (281)
T TIGR02438 30 TSKERVAAIARDVLGAINETILKHKVTYDEYNVLKQWLIDVGE--------DGEWPLFLDVFVEHSVEEVA 92 (281)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--------cCchHHHHHHHHHHHHHHHh
Confidence 56889997777777777777654332 2334556788999998 45677888888777766653
No 34
>PRK09458 pspB phage shock protein B; Provisional
Probab=34.29 E-value=74 Score=19.87 Aligned_cols=38 Identities=8% Similarity=0.112 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHHHHHHHhcchhhh-hhhcccc-CCchhh
Q 037487 2 VFTEKQEALVNESWEILKEISHKIA-CVSSPQI-APAAKG 39 (151)
Q Consensus 2 ~Lt~~e~~~i~~SW~~v~~~~~~~~-y~~lF~~-~P~~~~ 39 (151)
+||++|.+.+.+-++...+-.+.+. ..++... +|+-|+
T Consensus 35 ~Ls~~d~~~L~~L~~~A~rm~~RI~tLE~ILDae~P~WR~ 74 (75)
T PRK09458 35 GLSQEEQQRLAQLTEKAERMRERIQALEAILDAEHPNWRN 74 (75)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCcCC
Confidence 6999999999999999877777776 6666543 666553
No 35
>PF07637 PSD5: Protein of unknown function (DUF1595); InterPro: IPR013043 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013039 from INTERPRO and IPR013042 from INTERPRO.
Probab=31.90 E-value=1.1e+02 Score=18.02 Aligned_cols=48 Identities=10% Similarity=0.148 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhhCCCCCchHhHHHHHHHHHHHHHhcccChh-HHHHHHHH
Q 037487 85 DTTLKYLGSVHLKNGVLDPHFEVVKEALLRAIKEAVGEKWRD-MNCTWVEA 134 (151)
Q Consensus 85 ~~~l~~Lg~~H~~~gv~~~~f~~~~~~ll~~l~~~lg~~~~~-~~~AW~~~ 134 (151)
...|.++|.+=.++-++.+..+.+....-....+ |.+|.. ++.+...+
T Consensus 4 ~~~l~~Fa~rAfRRp~~~~e~~~~~~~~~~~~~~--g~~~~~a~~~~l~ai 52 (64)
T PF07637_consen 4 REILRRFARRAFRRPLTDEEVDRYLALYDSARAQ--GEDFEEALKEALQAI 52 (64)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHH
Confidence 5568888888888888888877666655555555 556666 65555443
No 36
>PF03172 Sp100: Sp100 domain; InterPro: IPR004865 The Sp100 and promyelocytic leukemia proteins (PML) are constituents of nuclear domains, known as nuclear dots (NDs or NBs - nuclear bodies or PML bodies), and are both covalently modified by the small ubiquitin-related protein SUMO-1. NBs play a role in autoimmunity, virus infections, and in the etiology of acute promyelocytic leukemia []. A functional nuclear localization signal and an NB-targeting region that coincides with an Sp100 homodimerization domain have been mapped. Sequences similar to the Sp100 homodimerization/ND-targeting region occur in several other proteins, which include the autoimmune regulator proteins (AIRE) and other numerous other transiently or permanently localised proteins. PML is expressed as a family of isoforms (PML I-VII) as a result of alternative splicing, most of which are found in the nucleus. Although there are many other functions of PML NBs in a wide range of cellular pathways, there is accumulating evidence that they represent preferential targets for viral infections and that PML plays a role in the mechanism of the antiviral action of interferon []. The Sp100 domain is usually found at the amino terminus of proteins that contain a SAND domain IPR000770 from INTERPRO. ; GO: 0005634 nucleus
Probab=30.04 E-value=19 Score=23.95 Aligned_cols=37 Identities=8% Similarity=0.098 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHHHHHHhcchhhhhhhccccCCchhhcCccCCC
Q 037487 3 FTEKQEALVNESWEILKEISHKIACVSSPQIAPAAKGMFSFLRD 46 (151)
Q Consensus 3 Lt~~e~~~i~~SW~~v~~~~~~~~y~~lF~~~P~~~~~F~~~~~ 46 (151)
||.-|+..+++-|..+.++ --.++||+.+.++++|.+
T Consensus 63 Ls~Lek~f~~~fl~~LFs~-------~nL~~YP~L~~i~~sf~~ 99 (103)
T PF03172_consen 63 LSWLEKTFIRSFLEALFSD-------YNLKEYPDLQEIYRSFPN 99 (103)
T ss_pred HHHHHHHhhHHHHHHHhhH-------HHHHHCccHHHHHHHhhh
Confidence 3444555666666666554 235678888888777643
No 37
>COG3023 ampD N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]
Probab=29.85 E-value=2e+02 Score=22.32 Aligned_cols=55 Identities=15% Similarity=0.157 Sum_probs=40.4
Q ss_pred CchhhHHHHHHHHHHHHhhCCCCCchHhHHHHHHHHHHHHHhcc-cChh-HHHHHHHHHHHH
Q 037487 79 GKVTVADTTLKYLGSVHLKNGVLDPHFEVVKEALLRAIKEAVGE-KWRD-MNCTWVEAYDQL 138 (151)
Q Consensus 79 ~~l~~~~~~l~~Lg~~H~~~gv~~~~f~~~~~~ll~~l~~~lg~-~~~~-~~~AW~~~~~~i 138 (151)
.++..+.+.|.. .+|||.+..|+..-+-++.+++.++.+ .|+. ....|...+..+
T Consensus 198 ~~v~~lq~~L~~-----YGY~v~~~~~d~~t~~vv~aFQ~hfrp~~~dg~~d~et~a~l~al 254 (257)
T COG3023 198 EDVAALQEMLAR-----YGYGVEIGVFDQETQQVVRAFQMHFRPGLYDGEADVETIAILQAL 254 (257)
T ss_pred CCHHHHHHHHHH-----hCcCCCcchhhHHHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHH
Confidence 444444444443 358999999999999999999999975 5777 777777665544
No 38
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups. This reaction is part of the modified ortho-cleavage pathway which is a central oxidative bacterial pathway that channels chlorocatechols, derived from the degradation of chlorinated benzoic acids, phenoxyacetic acids, phenols, benzenes, and other aromatics into the energy-generating tricarboxylic acid pathway.
Probab=29.78 E-value=2.6e+02 Score=21.56 Aligned_cols=59 Identities=12% Similarity=0.168 Sum_probs=37.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhc-ccCchhhHHHHHHHHHHHHhhCCCCCchHhHHHHHHHHHHHHHh
Q 037487 54 NPKLKAHAVKVFKMTCESAIQLR-EKGKVTVADTTLKYLGSVHLKNGVLDPHFEVVKEALLRAIKEAV 120 (151)
Q Consensus 54 ~~~~~~H~~~v~~~l~~~i~~l~-~~~~l~~~~~~l~~Lg~~H~~~gv~~~~f~~~~~~ll~~l~~~l 120 (151)
||+++.=..+++..|-++|...+ ..++.....++|.++|+ ...|-.+.++|+.++-+..
T Consensus 2 ~~R~~~i~~~lv~~lh~f~re~~lt~~E~~~~~~~l~~~G~--------r~E~~Ll~Dvl~~~~vd~~ 61 (247)
T cd03462 2 NNRVKAVVGDIVDAIRDVLLKHEVTYDEYRAGVQYLIKVGE--------AGEWPLLLDVFFNSTIEEV 61 (247)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--------cCchhHhHHHHHHHHHHHH
Confidence 56777655566666666654332 11334566788999997 4567778888877766654
No 39
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=28.60 E-value=56 Score=23.40 Aligned_cols=17 Identities=18% Similarity=0.460 Sum_probs=15.8
Q ss_pred CCCCHHHHHHHHHHHHH
Q 037487 1 MVFTEKQEALVNESWEI 17 (151)
Q Consensus 1 m~Lt~~e~~~i~~SW~~ 17 (151)
|++|++.++.+++=|..
T Consensus 1 M~Wtde~~~~L~~lw~~ 17 (162)
T PF07750_consen 1 MSWTDERVERLRKLWAE 17 (162)
T ss_pred CCCCHHHHHHHHHHHHc
Confidence 99999999999999965
No 40
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=28.31 E-value=63 Score=25.02 Aligned_cols=42 Identities=12% Similarity=0.229 Sum_probs=26.9
Q ss_pred CCCHHHHHHHHHHHHHHHhcchhhh-----hhhccccCCchhhcCcc
Q 037487 2 VFTEKQEALVNESWEILKEISHKIA-----CVSSPQIAPAAKGMFSF 43 (151)
Q Consensus 2 ~Lt~~e~~~i~~SW~~v~~~~~~~~-----y~~lF~~~P~~~~~F~~ 43 (151)
+++.+++..|++.+..+......+. -..-+..+|+++.+-.+
T Consensus 204 gf~~e~i~alr~ayk~lfr~~~~~~e~~~~i~~~~~~~~~v~~~~dF 250 (260)
T COG1043 204 GFSREEIHALRKAYKLLFRSGLTLREALEEIAEEYADNPEVKEFIDF 250 (260)
T ss_pred CCCHHHHHHHHHHHHHHeeCCCCHHHHHHHHHHHhcCChHHHHHHHH
Confidence 5788899999988888877654443 23344455555554433
No 41
>PHA02690 hypothetical protein; Provisional
Probab=28.17 E-value=1.6e+02 Score=18.61 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=20.8
Q ss_pred HHHHHHHhcccChh-HHHHHHHHHHHHHHHHH
Q 037487 113 LRAIKEAVGEKWRD-MNCTWVEAYDQLAAAIK 143 (151)
Q Consensus 113 l~~l~~~lg~~~~~-~~~AW~~~~~~i~~~i~ 143 (151)
++++..++.+ -+| .+++|+-+|+.+..++.
T Consensus 24 LeAIqrhlEg-s~plLR~~~RlLfDL~lTvfV 54 (90)
T PHA02690 24 LEAIQRHLEG-STPLLRQMWRLLFDLLLTVFV 54 (90)
T ss_pred HHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHH
Confidence 3455555533 358 99999999998776553
No 42
>cd07921 PCA_45_Doxase_A_like Subunit A of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and similar enzymes. This subfamily includes the A subunit of protocatechuate (PCA) 4,5-dioxygenase (LigAB) and two subfamilies of unknown function. The A subunit is the smaller, non-catalytic subunit of LigAB. PCA 4,5-dioxygenase catalyzes the oxidization and subsequent ring-opening of PCA (or 3,4-dihydroxybenzoic acid), which is an intermediate in the breakdown of lignin and other compounds. PCA 4,5-dioxygenase is one of the aromatic ring opening dioxygenases which play key roles in the degradation of aromatic compounds. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit.
Probab=28.11 E-value=46 Score=22.27 Aligned_cols=20 Identities=35% Similarity=0.491 Sum_probs=13.4
Q ss_pred CCCHHHHHHHHH-HHHHHHhc
Q 037487 2 VFTEKQEALVNE-SWEILKEI 21 (151)
Q Consensus 2 ~Lt~~e~~~i~~-SW~~v~~~ 21 (151)
+||++|+++|++ -|..+..-
T Consensus 44 gLTeEe~~AV~~rD~~~Li~l 64 (106)
T cd07921 44 GLTEEQKQAVLDRDWLRLLEL 64 (106)
T ss_pred CCCHHHHHHHHhCCHHHHHHh
Confidence 688899988875 25555433
No 43
>PF08921 DUF1904: Domain of unknown function (DUF1904); InterPro: IPR015017 This entry represents a family of hypothetical bacterial proteins. ; PDB: 1U9D_B.
Probab=27.31 E-value=39 Score=22.59 Aligned_cols=27 Identities=22% Similarity=0.551 Sum_probs=22.0
Q ss_pred Hhh-CCCCCchHhHHHHHHHHHHHHHhc
Q 037487 95 HLK-NGVLDPHFEVVKEALLRAIKEAVG 121 (151)
Q Consensus 95 H~~-~gv~~~~f~~~~~~ll~~l~~~lg 121 (151)
|.+ +|++++....++.-|++-|++.++
T Consensus 3 hlr~rGi~~e~v~~~S~~LideLa~i~~ 30 (108)
T PF08921_consen 3 HLRFRGIEEEQVQELSKELIDELAEICG 30 (108)
T ss_dssp EEEEESS-HHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEecCCHHHHHHHhHHHHHHHHHHHC
Confidence 444 789999999999999999999876
No 44
>PF13324 GCIP: Grap2 and cyclin-D-interacting; PDB: 3AY5_A.
Probab=27.28 E-value=1.6e+02 Score=22.72 Aligned_cols=85 Identities=12% Similarity=-0.021 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHHHHHhcchhhh-hhhccccCCchhhcCccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhcccCch
Q 037487 3 FTEKQEALVNESWEILKEISHKIA-CVSSPQIAPAAKGMFSFLRDSDGIPQNNPKLKAHAVKVFKMTCESAIQLREKGKV 81 (151)
Q Consensus 3 Lt~~e~~~i~~SW~~v~~~~~~~~-y~~lF~~~P~~~~~F~~~~~~~~~l~~~~~~~~H~~~v~~~l~~~i~~l~~~~~l 81 (151)
+|+++++++....+.++....-+- +.+.|........ +... .....+-.++..++..|-..+++++..|..|-+.
T Consensus 179 ~seee~~~~~~~~~l~~~~~~~lk~~~~~i~~~~k~~~--~~~~--~~~v~~Ld~L~~~~~~i~~~VDel~~slYpP~d~ 254 (275)
T PF13324_consen 179 LSEEEMELAKAVLGLLKASLAVLKKLLRAITKLLKSEK--PSDS--PEQVAQLDKLLDLCQEISPSVDELASSLYPPQDP 254 (275)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------TT-HHHHHHHHHHHHHHHHHHHHHHHHHSSS--H
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc--cccC--hhhHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCH
Confidence 788999999988888765544333 3333333221111 1110 0000111234555556666666666666655555
Q ss_pred hhHHHHHHHH
Q 037487 82 TVADTTLKYL 91 (151)
Q Consensus 82 ~~~~~~l~~L 91 (151)
+.+...+.+|
T Consensus 255 ~~v~~~~~~L 264 (275)
T PF13324_consen 255 DEVRAAAAKL 264 (275)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 45
>PF02035 Coagulin: Coagulin; InterPro: IPR000275 Coagulogen is a gel-forming protein of hemolymph that hinders the spread of invaders by immobilising them [, ]. The protein contains a single 175- residue polypeptide chain; this is cleaved after Arg-18 and Arg-46 by a clotting enzyme contained in the hemocyte and activated by a bacterial endotoxin (lipopolysaccharide). Cleavage releases two chains of coagulin, A and B, linked by two disulphide bonds, together with the peptide C [, ]. Gel formation results from interlinking of coagulin molecules. Secondary structure prediction suggests the C peptide forms an alpha- helix, which is released during the proteolytic conversion of coagulogen to coagulin gel []. The beta-sheet structure and 16 half-cystines found in the molecule appear to yield a compact protein stable to acid and heat. Mammalian blood coagulation is based on the proteolytically induced polymerisation of fibrinogens. Initially, fibrin monomers noncovalently interact with each other. The resulting homopolymers are further stabilised when the plasma transglutaminase (TGase) intermolecularly cross-links epsilon-(gamma-glutamyl)lysine bonds. In crustaceans, hemolymph coagulation depends on the TGase-mediated cross-linking of specific plasma-clotting proteins, but without the proteolytic cascade. In horseshoe crabs, the proteolytic coagulation cascade triggered by lipopolysaccharides and beta-1,3-glucans leads to the conversion of coagulogen into coagulin, resulting in noncovalent coagulin homopolymers through head-to-tail interaction. Horseshoe crab TGase, however, does not cross-link coagulins intermolecularly. Recently, we found that coagulins are cross-linked on hemocyte cell surface proteins called proxins. This indicates that a cross-linking reaction at the final stage of hemolymph coagulation is an important innate immune system of horseshoe crabs [].; GO: 0042381 hemolymph coagulation, 0005576 extracellular region; PDB: 1AOC_A.
Probab=27.11 E-value=70 Score=22.28 Aligned_cols=37 Identities=8% Similarity=0.049 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHHHHHHhcchhhh--hhhccccCCchhhc
Q 037487 3 FTEKQEALVNESWEILKEISHKIA--CVSSPQIAPAAKGM 40 (151)
Q Consensus 3 Lt~~e~~~i~~SW~~v~~~~~~~~--y~~lF~~~P~~~~~ 40 (151)
.|++-++.|.+.-+.+....+..| |. +|..||-++.-
T Consensus 20 vs~e~k~kiekaveava~e~~vsgrgfs-~f~~hpvfrec 58 (174)
T PF02035_consen 20 VSQETKDKIEKAVEAVADESGVSGRGFS-IFSHHPVFREC 58 (174)
T ss_dssp --HHHHHHHHHHHHHHHHCC-SSTTTCG-GCCCSHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhhcCcccccee-eecCChhHhhc
Confidence 467888999999999988877777 65 88888887753
No 46
>cd07321 Extradiol_Dioxygenase_3A_like Subunit A of Class III extradiol dioxygenases. Extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. There are two major groups of dioxygenases according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents subunit A of c
Probab=27.04 E-value=44 Score=20.78 Aligned_cols=18 Identities=17% Similarity=0.058 Sum_probs=12.1
Q ss_pred CCCHHHHHHHHH-HHHHHH
Q 037487 2 VFTEKQEALVNE-SWEILK 19 (151)
Q Consensus 2 ~Lt~~e~~~i~~-SW~~v~ 19 (151)
+||++|+++|++ .|..+.
T Consensus 34 ~Lt~eE~~al~~rD~~~L~ 52 (77)
T cd07321 34 GLTPEEKAALLARDVGALY 52 (77)
T ss_pred CCCHHHHHHHHcCCHHHHH
Confidence 688888888874 344443
No 47
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=26.53 E-value=1.2e+02 Score=18.86 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHHHHHHhcchhhh-hhhccc-cCCchhh
Q 037487 2 VFTEKQEALVNESWEILKEISHKIA-CVSSPQ-IAPAAKG 39 (151)
Q Consensus 2 ~Lt~~e~~~i~~SW~~v~~~~~~~~-y~~lF~-~~P~~~~ 39 (151)
+||++|.+.+.+=+....+-.+.+. ..++.. .+|.-|+
T Consensus 35 gLs~~d~~~L~~L~~~a~rm~eRI~tLE~ILdae~P~wR~ 74 (75)
T PF06667_consen 35 GLSEEDEQRLQELYEQAERMEERIETLERILDAEHPNWRQ 74 (75)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccc
Confidence 6899999999999998877766666 666554 3666543
No 48
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=26.30 E-value=49 Score=20.41 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhcchhhh-----hhhccccCCchhhc
Q 037487 8 EALVNESWEILKEISHKIA-----CVSSPQIAPAAKGM 40 (151)
Q Consensus 8 ~~~i~~SW~~v~~~~~~~~-----y~~lF~~~P~~~~~ 40 (151)
..+++...+.+..+.-.+- -...|++||+++.+
T Consensus 41 ~~L~~~~l~~a~~~~~kv~p~C~y~~~~~~~hpey~dl 78 (78)
T PF14542_consen 41 KKLVEAALDYARENGLKVVPTCSYVAKYFRRHPEYQDL 78 (78)
T ss_dssp HHHHHHHHHHHHHTT-EEEETSHHHHHHHHH-GGGTTT
T ss_pred HHHHHHHHHHHHHCCCEEEEECHHHHHHHHhCcccccC
Confidence 3566666666666654432 56788999998764
No 49
>PF13373 DUF2407_C: DUF2407 C-terminal domain
Probab=26.07 E-value=84 Score=22.00 Aligned_cols=21 Identities=5% Similarity=0.015 Sum_probs=18.4
Q ss_pred CCCCHHHHHHHHHHHHHHHhc
Q 037487 1 MVFTEKQEALVNESWEILKEI 21 (151)
Q Consensus 1 m~Lt~~e~~~i~~SW~~v~~~ 21 (151)
+++|++|++.+|+.+-.+..+
T Consensus 9 ~GFS~~eI~~LR~QF~~~~~~ 29 (140)
T PF13373_consen 9 AGFSPEEIQDLRSQFHSIYGD 29 (140)
T ss_pred cCCCHHHHHHHHHHHHHHhcc
Confidence 479999999999999998764
No 50
>cd07923 Gallate_dioxygenase_C The C-terminal domain of Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of the PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. This model represents the C-terminal domain, which is similar to the A subunit of PCA 4,5-dioxygenase (or LigAB). The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. Since enzymes in this subfamily have fused A and B subunits, the dimer interface may resemble the tetramer interface of classical LigAB enzymes. This enzyme belongs to the class III extradiol dioxygenase family, composed of enzymes whi
Probab=25.97 E-value=46 Score=21.74 Aligned_cols=17 Identities=24% Similarity=0.536 Sum_probs=11.5
Q ss_pred CCCHHHHHHHHH-HHHHH
Q 037487 2 VFTEKQEALVNE-SWEIL 18 (151)
Q Consensus 2 ~Lt~~e~~~i~~-SW~~v 18 (151)
+||++|+++|++ -|..+
T Consensus 36 gLt~Ee~~av~~rD~~~l 53 (94)
T cd07923 36 GLTEEERTLIRNRDWIGM 53 (94)
T ss_pred CCCHHHHHHHHcchHHHH
Confidence 688888888873 34444
No 51
>PF08359 TetR_C_4: YsiA-like protein, C-terminal region; InterPro: IPR013570 The members of this family are thought to be TetR-type (tetracycline resistance) transcriptional regulators that bear particular similarity to YsiA (P94548 from SWISSPROT). This entry represents the C-terminal domain.; PDB: 1VI0_B.
Probab=25.17 E-value=2.1e+02 Score=18.86 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHhhC
Q 037487 59 AHAVKVFKMTCESAIQLREKGKVTVADTTLKYLGSVHLKN 98 (151)
Q Consensus 59 ~H~~~v~~~l~~~i~~l~~~~~l~~~~~~l~~Lg~~H~~~ 98 (151)
.+..+++..+... +++..+. .+.|+.+-..|..+
T Consensus 3 ~~~~~~~~~i~~~---~~~~~~~---~ekL~~~i~~~~~~ 36 (133)
T PF08359_consen 3 EKMNRFLERIEEA---IADESSP---EEKLRALIEAHLDF 36 (133)
T ss_dssp HHHHHHHHHHHHH---HCC--SH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HccCCCH---HHHHHHHHHHHHHH
Confidence 3444444555443 4444444 56677777777753
No 52
>COG5420 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=24.44 E-value=61 Score=19.59 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=17.0
Q ss_pred HHHHHHHhcccChh-HHHHHHH
Q 037487 113 LRAIKEAVGEKWRD-MNCTWVE 133 (151)
Q Consensus 113 l~~l~~~lg~~~~~-~~~AW~~ 133 (151)
+.-|++-|+.+|+. ...||..
T Consensus 29 LhDLAEgLP~~wtei~~VA~kt 50 (71)
T COG5420 29 LHDLAEGLPVKWTEIMAVAEKT 50 (71)
T ss_pred HHHHhccCCccHHHHHHHHHHH
Confidence 34578888999999 8889875
No 53
>COG0851 MinE Septum formation topological specificity factor [Cell division and chromosome partitioning]
Probab=24.31 E-value=2.1e+02 Score=18.49 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=23.9
Q ss_pred HHhh-CCCCCchHhHHHHHHHHHHHHHhc
Q 037487 94 VHLK-NGVLDPHFEVVKEALLRAIKEAVG 121 (151)
Q Consensus 94 ~H~~-~gv~~~~f~~~~~~ll~~l~~~lg 121 (151)
-|-+ .|..|++++.+.+=++++++.+..
T Consensus 27 A~eR~~~~~pd~l~~Lr~eIl~VI~KYV~ 55 (88)
T COG0851 27 AHERAAGLQPDYLEQLRKEILEVISKYVQ 55 (88)
T ss_pred hhhhhcCCCcchHHHHHHHHHHHHHHHhe
Confidence 3444 899999999999999999998864
No 54
>PF03645 Tctex-1: Tctex-1 family; InterPro: IPR005334 Tctex-1 is a dynein light chain. Dynein translocates rhodopsin-bearing vesicles along microtubules and it has been shown that Tctex-1 can bind to the cytoplasmic tail of rhodopsin. An efficient vectorial transport system must be required to deliver large numbers of newly synthesized rhodopsin molecules (~107 molecules per day per photoreceptor) to the base of the outer segment of the photoreceptor, Tctex-1 may well play a role in this process. C-terminal rhodopsin mutations responsible for retinitis pigmentosa inhibit the interaction between Tctex-1 and rhodopsin, which may be the molecular basis of retinitis pigmentosa. In the mouse, the chromosomal location and pattern of expression of Tctex-1 make it a candidate for involvement in male sterility [].; PDB: 1YGT_A 3FM7_A 2PG1_E 1XDX_B.
Probab=24.12 E-value=2e+02 Score=18.27 Aligned_cols=38 Identities=21% Similarity=0.432 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhcc-cChh-HHHHHHHHHHHHHHHHHHhhc
Q 037487 107 VVKEALLRAIKEAVGE-KWRD-MNCTWVEAYDQLAAAIKAEMK 147 (151)
Q Consensus 107 ~~~~~ll~~l~~~lg~-~~~~-~~~AW~~~~~~i~~~i~~~~~ 147 (151)
.+.+.+-++|++.|++ .|++ ....|.+ .|++.+...++
T Consensus 2 ~v~~ii~~~l~~~l~~~~Y~~~~~~~~~~---~I~~~i~~~lk 41 (101)
T PF03645_consen 2 EVKEIIEEVLEEKLEDQKYDPEKAQQWSK---EISDEILERLK 41 (101)
T ss_dssp HHHHHHHHHHHHHHCTS---HHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCChHHHHHHHH---HHHHHHHHHHH
Confidence 4567788888888865 6888 8888876 44555554444
No 55
>PF04391 DUF533: Protein of unknown function (DUF533); InterPro: IPR007486 Some family members may be secreted or integral membrane proteins.
Probab=23.94 E-value=2.9e+02 Score=20.30 Aligned_cols=41 Identities=7% Similarity=0.006 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHHHHHhcchhhh-hhhccccCCchhhcCcc
Q 037487 3 FTEKQEALVNESWEILKEISHKIA-CVSSPQIAPAAKGMFSF 43 (151)
Q Consensus 3 Lt~~e~~~i~~SW~~v~~~~~~~~-y~~lF~~~P~~~~~F~~ 43 (151)
++++|++.|...-.....+.+.-. ...-+.+-.+...+-..
T Consensus 96 ID~~Er~~I~~~l~~~g~d~e~~~~l~~eL~~P~d~~~la~~ 137 (188)
T PF04391_consen 96 IDEEERQRIEGALQELGLDAEERAWLQAELAAPLDPDALAAA 137 (188)
T ss_pred CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCCHHHHHHh
Confidence 567777777776666544433333 44455444444444433
No 56
>PF08539 HbrB: HbrB-like; InterPro: IPR013745 HbrB is involved in hyphal growth and polarity [].
Probab=23.80 E-value=2.8e+02 Score=19.79 Aligned_cols=79 Identities=14% Similarity=0.219 Sum_probs=46.2
Q ss_pred HHHHHHHHHhcccCchhhHHHHHHHHHHHHhhCCCCCch---H----hHHHHHHHHHHHHHh----cccChh-HHHHHHH
Q 037487 66 KMTCESAIQLREKGKVTVADTTLKYLGSVHLKNGVLDPH---F----EVVKEALLRAIKEAV----GEKWRD-MNCTWVE 133 (151)
Q Consensus 66 ~~l~~~i~~l~~~~~l~~~~~~l~~Lg~~H~~~gv~~~~---f----~~~~~~ll~~l~~~l----g~~~~~-~~~AW~~ 133 (151)
+.++..+..+-+.+++..-.+.|+++-+.|.++.+...- | +.+-..=+.+|.+.+ ++.+=+ .-+.|..
T Consensus 10 ~~~~~~vl~lF~g~~l~~~iEdlN~lv~~~i~~~~~~~~~~~~~~dl~elL~tg~~~L~~~l~~~~~~~~l~rL~eiW~~ 89 (158)
T PF08539_consen 10 NSLCAKVLPLFQGERLRLPIEDLNELVRFHIKLCIQSFPPSYFLEDLEELLTTGMYILENQLNEVPDNRLLKRLVEIWQF 89 (158)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 344444444555555544477889999999987765542 2 122222223333333 334445 6789999
Q ss_pred HHHHHHHHHHH
Q 037487 134 AYDQLAAAIKA 144 (151)
Q Consensus 134 ~~~~i~~~i~~ 144 (151)
+|+.|.-.+.+
T Consensus 90 Ff~~VlP~lqa 100 (158)
T PF08539_consen 90 FFTQVLPYLQA 100 (158)
T ss_pred HhcchHHHHHH
Confidence 99988776654
No 57
>KOG4103 consensus Mitochondrial F1F0-ATP synthase, subunit g/ATP20 [Energy production and conversion]
Probab=23.46 E-value=1e+02 Score=20.29 Aligned_cols=21 Identities=14% Similarity=0.115 Sum_probs=15.8
Q ss_pred CCCHHHHHHHHHHHHHHHhcc
Q 037487 2 VFTEKQEALVNESWEILKEIS 22 (151)
Q Consensus 2 ~Lt~~e~~~i~~SW~~v~~~~ 22 (151)
+-|++|+..|+++|..+.+..
T Consensus 40 PPt~Ad~pai~q~l~~~~~~~ 60 (103)
T KOG4103|consen 40 PPTPADIPAIKQDLAKLKKFA 60 (103)
T ss_pred CCChhhHHHHHHHHHHhHHHH
Confidence 347888999999999775543
No 58
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=23.45 E-value=2.1e+02 Score=21.26 Aligned_cols=42 Identities=19% Similarity=0.215 Sum_probs=25.4
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHhhCC
Q 037487 51 PQNNPKLKAHAVKVFKMTCESAIQLREKGKVTVADTTLKYLGSVHLKNG 99 (151)
Q Consensus 51 l~~~~~~~~H~~~v~~~l~~~i~~l~~~~~l~~~~~~l~~Lg~~H~~~g 99 (151)
|.+.|.-++++..+...|...|.-|.| ...++.|+..-.+||
T Consensus 88 LP~d~~KRA~~r~i~~~i~sgIQPlQN-------l~vl~~l~ek~~~~~ 129 (217)
T KOG0868|consen 88 LPKDPHKRAKARAISLLIASGIQPLQN-------LSVLKMLNEKEPGYG 129 (217)
T ss_pred CCcCHHHHHHHHHHHHHHHhCCCcchh-------hHHHHHhcccccchh
Confidence 466777777776666666554433444 344666666666666
No 59
>PF08855 DUF1825: Domain of unknown function (DUF1825); InterPro: IPR014954 These roteins are uncharacterised and are principally found in cyanobacteria.
Probab=23.07 E-value=2.4e+02 Score=18.89 Aligned_cols=35 Identities=3% Similarity=0.044 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhhCCCCCchHhHHHHHHHHHHHHH
Q 037487 85 DTTLKYLGSVHLKNGVLDPHFEVVKEALLRAIKEA 119 (151)
Q Consensus 85 ~~~l~~Lg~~H~~~gv~~~~f~~~~~~ll~~l~~~ 119 (151)
...++.+-..=..+|.+|.....+.+.+..+|+..
T Consensus 69 k~m~~qi~~~~~~fG~~~~~l~~~fd~m~~tLe~m 103 (108)
T PF08855_consen 69 KDMKEQINAQLNQFGYTPQDLSQMFDQMNQTLERM 103 (108)
T ss_pred HHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHH
Confidence 45566666666679999988888888888888764
No 60
>COG4573 GatZ Predicted tagatose 6-phosphate kinase [Carbohydrate transport and metabolism]
Probab=22.93 E-value=1.2e+02 Score=24.87 Aligned_cols=55 Identities=16% Similarity=0.260 Sum_probs=39.6
Q ss_pred HHh-hC-CCCCchHhHHHHHHHHHHH----------HHhcc-cChh--HHHHHHHHHHHHHHHHHHhhch
Q 037487 94 VHL-KN-GVLDPHFEVVKEALLRAIK----------EAVGE-KWRD--MNCTWVEAYDQLAAAIKAEMKE 148 (151)
Q Consensus 94 ~H~-~~-gv~~~~f~~~~~~ll~~l~----------~~lg~-~~~~--~~~AW~~~~~~i~~~i~~~~~~ 148 (151)
+|. +| |.+|..|..|-.++-..+. ++||+ .|.. ..+|-.|+-+.|......|..+
T Consensus 54 nq~GGYTGMTP~DFr~fV~aiA~~~gfp~e~liLGGDHLGPN~Wq~~pA~eAM~ka~~mv~AYv~AGF~K 123 (426)
T COG4573 54 NQFGGYTGMTPADFRGFVFAIADKLGFPRERLILGGDHLGPNPWQHLPAAEAMAKADDLVKAYVAAGFTK 123 (426)
T ss_pred cccCCcCCCChHHHHHHHHHHHHHhCCcHHHHhccCCcCCCCccccCCHHHHHHHHHHHHHHHHHcCcee
Confidence 344 46 8999999988877765542 22333 3776 8999999999988888776543
No 61
>COG3028 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.69 E-value=1.9e+02 Score=21.20 Aligned_cols=81 Identities=16% Similarity=0.183 Sum_probs=50.0
Q ss_pred hccccCCchhhcCccCCCCCCCCCCChHHHHH-HH-HHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHhhCCCCCchHh
Q 037487 29 SSPQIAPAAKGMFSFLRDSDGIPQNNPKLKAH-AV-KVFKMTCESAIQLREKGKVTVADTTLKYLGSVHLKNGVLDPHFE 106 (151)
Q Consensus 29 ~lF~~~P~~~~~F~~~~~~~~~l~~~~~~~~H-~~-~v~~~l~~~i~~l~~~~~l~~~~~~l~~Lg~~H~~~gv~~~~f~ 106 (151)
+|-..-|+.-..+|-.-++-..+..-+++..| |. |=+.+|.+. |++. +++.+...|.+++.+|..+...-.-.+
T Consensus 45 ~L~~L~~~~L~KiPL~E~L~~Ai~~aqri~~~~arrRQlQyIGKl---mR~~-DvepI~~~Ldkl~~~~~q~~a~lHklE 120 (187)
T COG3028 45 ELVDLTKAALAKIPLDEDLLEAIELAQRIKSEIARRRQLQYIGKL---MRDR-DVEPIRAALDKLRNRHNQQVALLHKLE 120 (187)
T ss_pred HHHhcCHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhC-ChHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34445566666666532221123445678888 43 356777775 5554 477889999999999987655444455
Q ss_pred HHHHHHH
Q 037487 107 VVKEALL 113 (151)
Q Consensus 107 ~~~~~ll 113 (151)
.+.+-|+
T Consensus 121 ~~RdrLi 127 (187)
T COG3028 121 QLRDRLI 127 (187)
T ss_pred HHHHHHH
Confidence 5554444
No 62
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.42 E-value=1.4e+02 Score=21.82 Aligned_cols=110 Identities=10% Similarity=0.045 Sum_probs=63.0
Q ss_pred hhhccccCCchhhcCccCCC-----CC----CCCCCChHHHHHHHHHHHHHHHHH--HHhcccCchhhHHHHHHHHHHH-
Q 037487 27 CVSSPQIAPAAKGMFSFLRD-----SD----GIPQNNPKLKAHAVKVFKMTCESA--IQLREKGKVTVADTTLKYLGSV- 94 (151)
Q Consensus 27 y~~lF~~~P~~~~~F~~~~~-----~~----~~l~~~~~~~~H~~~v~~~l~~~i--~~l~~~~~l~~~~~~l~~Lg~~- 94 (151)
....+.+-|.++..|..|.- .+ +.|.++|.+..|-.+|...+.++- ..+... .+..+|......
T Consensus 45 W~tIL~Kr~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi~NA~~~l~i~~e----sf~~ylW~fv~~~ 120 (179)
T TIGR00624 45 WITVLRKRENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATIANARAALQLEQN----DLVEFLWSFVNHQ 120 (179)
T ss_pred HHHHHHhHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHHHc----cHHHHHHhccCCC
Confidence 66667777777777766521 11 147888888888888887777532 223221 235556544211
Q ss_pred ----Hhh-CCCCCchHhHHHHHHHHHHHHHhcccChh--HHHHHHHHHHHHHHHH
Q 037487 95 ----HLK-NGVLDPHFEVVKEALLRAIKEAVGEKWRD--MNCTWVEAYDQLAAAI 142 (151)
Q Consensus 95 ----H~~-~gv~~~~f~~~~~~ll~~l~~~lg~~~~~--~~~AW~~~~~~i~~~i 142 (151)
|.. .+-.|. -..+...|...|+.. |-.|.. +.-++-.+.+.|.+.+
T Consensus 121 Pi~~~~~~~~~~p~-~t~~S~~lskdLKkr-GfkFvGpt~~ysfmqA~G~vndH~ 173 (179)
T TIGR00624 121 PQPRQRPTDSEIPS-STPESKAMSKELKKR-GFRFVGPTICYALMQATGMVDDHI 173 (179)
T ss_pred CccCCccccccCCC-CCHHHHHHHHHHHHc-CCeecChHHHHHHHHHHCCccccc
Confidence 111 111112 245688888888877 655554 6677777766665443
No 63
>TIGR02677 conserved hypothetical protein TIGR02677. Members of this protein belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria).
Probab=22.41 E-value=2.5e+02 Score=24.00 Aligned_cols=53 Identities=8% Similarity=-0.012 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhhCCCCCchHhHHHHHHHHHHHHHhcc--cChh-HHHHHHHHHHH
Q 037487 85 DTTLKYLGSVHLKNGVLDPHFEVVKEALLRAIKEAVGE--KWRD-MNCTWVEAYDQ 137 (151)
Q Consensus 85 ~~~l~~Lg~~H~~~gv~~~~f~~~~~~ll~~l~~~lg~--~~~~-~~~AW~~~~~~ 137 (151)
..++..|+.......+.++-|-.+++.|+.+|++...+ ...+ ++.+-..+=+.
T Consensus 162 ~df~~~L~~~~~~~~~~~e~Fl~yKd~Li~YL~~Fv~~L~~~~~~I~~~l~~l~~~ 217 (494)
T TIGR02677 162 QAFMADLQRHRPLEVADYEAFLAYKDRLIAYLQDFIVRLVDRSEQIAQLLRVLAES 217 (494)
T ss_pred HHHHHHHcccchhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 44555566555556789999999999999999998763 3455 66665544333
No 64
>cd07925 LigA_like_1 The A subunit of Uncharacterized proteins with similarity to Protocatechuate 4,5-dioxygenase (LigAB). The proteins of unknown function in this subfamily are similar to the A subunit of the Protocatechuate (PCA) 4,5-dioxygenase (LigAB). LigAB belongs to the class III extradiol dioxygenase family, composed of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Dioxygenases play key roles in the degradation of aromatic compounds. PCA 4,5-dioxygenase catalyzes the oxidization and subsequent ring-opening of PCA (or 3,4-dihydroxybenzoic acid), which is an intermediate in the breakdown of lignin and other compounds.
Probab=22.39 E-value=72 Score=21.34 Aligned_cols=20 Identities=20% Similarity=0.089 Sum_probs=13.3
Q ss_pred CCCHHHHHHHHH-HHHHHHhc
Q 037487 2 VFTEKQEALVNE-SWEILKEI 21 (151)
Q Consensus 2 ~Lt~~e~~~i~~-SW~~v~~~ 21 (151)
+||++|+++|++ -|..+-.-
T Consensus 44 ~Lteeqr~av~~RD~~~li~~ 64 (106)
T cd07925 44 GLTPEQKQAVRNRDVLRMLEA 64 (106)
T ss_pred CCCHHHHHHHHHhhHHHHHHc
Confidence 688889888874 35554433
No 65
>PF03750 DUF310: Protein of unknown function (DUF310); InterPro: IPR010149 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents the C-terminal domain of a minor family of CRISPR-associated proteins. These proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element.
Probab=22.37 E-value=1.6e+02 Score=19.81 Aligned_cols=11 Identities=27% Similarity=0.120 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 037487 107 VVKEALLRAIK 117 (151)
Q Consensus 107 ~~~~~ll~~l~ 117 (151)
.+.||++..-+
T Consensus 103 ~~fEAiVAYhK 113 (119)
T PF03750_consen 103 KFFEAIVAYHK 113 (119)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 66
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=22.34 E-value=1.7e+02 Score=23.54 Aligned_cols=36 Identities=17% Similarity=0.335 Sum_probs=28.6
Q ss_pred CCCchHhHHHHHHHHHHHHHhcc-cChh-HHHHHHHHHH
Q 037487 100 VLDPHFEVVKEALLRAIKEAVGE-KWRD-MNCTWVEAYD 136 (151)
Q Consensus 100 v~~~~f~~~~~~ll~~l~~~lg~-~~~~-~~~AW~~~~~ 136 (151)
|.|-+. .-.++|++-+++..|+ .|.. .+.+|+++|.
T Consensus 304 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T PRK12557 304 IKPTTL-VAAQALVKEIKTLIGGRAAEGAIRRSMRKLFE 341 (342)
T ss_pred ccccee-cChHHHHHHHHHHhccchhHHHHHHHHHHHhc
Confidence 555555 5688999999999986 4777 9999999875
No 67
>PRK13378 protocatechuate 4,5-dioxygenase subunit alpha; Provisional
Probab=22.29 E-value=71 Score=21.74 Aligned_cols=20 Identities=15% Similarity=0.091 Sum_probs=13.5
Q ss_pred CCCHHHHHHHHH-HHHHHHhc
Q 037487 2 VFTEKQEALVNE-SWEILKEI 21 (151)
Q Consensus 2 ~Lt~~e~~~i~~-SW~~v~~~ 21 (151)
+||++|+++|++ -|..+-.-
T Consensus 55 ~Lteeqk~aV~~RD~~~mi~~ 75 (117)
T PRK13378 55 GLNEEQKEAIRNRDVLQLLAA 75 (117)
T ss_pred CCCHHHHHHHHhhhHHHHHHc
Confidence 688999988874 35555433
No 68
>KOG3991 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.99 E-value=3.8e+02 Score=20.68 Aligned_cols=48 Identities=10% Similarity=0.228 Sum_probs=33.0
Q ss_pred hcccCchhhHHHHHHHHHHHHhhCCCCCchHhHHHHHHHHHHHHHhcc
Q 037487 75 LREKGKVTVADTTLKYLGSVHLKNGVLDPHFEVVKEALLRAIKEAVGE 122 (151)
Q Consensus 75 l~~~~~l~~~~~~l~~Lg~~H~~~gv~~~~f~~~~~~ll~~l~~~lg~ 122 (151)
|.+...+..+.....+--+.=..+|++.--|+.|.+.++++|.++.|+
T Consensus 89 l~d~~~l~~fka~~~kt~~~L~~~gf~e~t~~dFh~~Fievle~v~~g 136 (256)
T KOG3991|consen 89 LLDRAELQKFKAAVEKTKETLVLLGFPEFTFEDFHDTFIEVLEDVEGG 136 (256)
T ss_pred HhchHHHHHHHHHHHhhhHHHHHcCCCccchhhHHHHHHHHHHHHcCC
Confidence 334333433333333333334468999999999999999999999876
No 69
>PRK00106 hypothetical protein; Provisional
Probab=21.60 E-value=1.7e+02 Score=25.27 Aligned_cols=82 Identities=17% Similarity=0.170 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhcchhhh-----hhhccccCCchhhcCccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhcccCchhhH
Q 037487 10 LVNESWEILKEISHKIA-----CVSSPQIAPAAKGMFSFLRDSDGIPQNNPKLKAHAVKVFKMTCESAIQLREKGKVTVA 84 (151)
Q Consensus 10 ~i~~SW~~v~~~~~~~~-----y~~lF~~~P~~~~~F~~~~~~~~~l~~~~~~~~H~~~v~~~l~~~i~~l~~~~~l~~~ 84 (151)
.+.++...+.......| =..+...||+...+....+..+ ..++.+-.|+..|...-..+...+.-....-.+
T Consensus 302 ~v~k~~~e~~~~i~~~Ge~a~~~lg~~~~~~e~~~~lg~l~~r~---sy~qnl~~HSv~VA~lA~~lA~~lgld~e~a~~ 378 (535)
T PRK00106 302 LVEKNRLEMDNRIREYGEAAAYEIGAPNLHPDLIKIMGRLQFRT---SYGQNVLRHSVEVGKLAGILAGELGENVALARR 378 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhhhc---cCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 34444444444444445 2345678999999988765433 334457889877643322222222211012233
Q ss_pred HHHHHHHHHH
Q 037487 85 DTTLKYLGSV 94 (151)
Q Consensus 85 ~~~l~~Lg~~ 94 (151)
...|-++|+-
T Consensus 379 AGLLHDIGK~ 388 (535)
T PRK00106 379 AGFLHDMGKA 388 (535)
T ss_pred HHHHHhccCc
Confidence 4556666655
No 70
>TIGR02792 PCA_ligA protocatechuate 4,5-dioxygenase, alpha subunit. Protocatechuate (PCA) 4,5-dioxygenase is the first enzyme in the PCA 4,5-cleavage pathway that is an alternative to PCA 3,4-cleavage and PCA 2,3 cleavage pathways. PCA is an intermediate in the breakdown of lignin (hence the gene symbol ligA) and other compounds. Members of this family are the alpha chain of PCA 4,5-dioxygenase, or the equivalent domain of a fusion protein.
Probab=21.44 E-value=76 Score=21.60 Aligned_cols=20 Identities=15% Similarity=0.013 Sum_probs=13.7
Q ss_pred CCCHHHHHHHHH-HHHHHHhc
Q 037487 2 VFTEKQEALVNE-SWEILKEI 21 (151)
Q Consensus 2 ~Lt~~e~~~i~~-SW~~v~~~ 21 (151)
+||++|+++|+. -|..+-.-
T Consensus 49 ~Lt~eqk~av~~RD~~~li~~ 69 (117)
T TIGR02792 49 NLTPAQKQAVLARDLNACIDE 69 (117)
T ss_pred CCCHHHHHHHHhhhHHHHHHc
Confidence 689999988874 45555443
No 71
>PF08649 DASH_Dad1: DASH complex subunit Dad1; InterPro: IPR013958 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules []. Throughout the cell cycle Dad1 remains bound to kinetochores and its association is dependent on the Mis6 and Mal2 [].
Probab=21.28 E-value=62 Score=19.16 Aligned_cols=20 Identities=25% Similarity=0.750 Sum_probs=15.5
Q ss_pred hcccChhHHHHHHHHHHHHH
Q 037487 120 VGEKWRDMNCTWVEAYDQLA 139 (151)
Q Consensus 120 lg~~~~~~~~AW~~~~~~i~ 139 (151)
+|.+|+++..-|.++++.+.
T Consensus 38 VGkEF~~V~~LW~~F~~~m~ 57 (58)
T PF08649_consen 38 VGKEFESVSSLWSQFYNGMA 57 (58)
T ss_pred HhhhHHHHHHHHHHHHHHhc
Confidence 37778778888999888764
No 72
>PF12162 STAT1_TAZ2bind: STAT1 TAZ2 binding domain; InterPro: IPR022752 This entry represents the C-terminal domain of STAT1, which selectively binds the TAZ2 domain of CRB (CREB-binding protein) []. This group of eukaryotic proteins is approximately 20 amino acids in length, and is found in association with PF02865 from PFAM, PF00017 from PFAM, PF01017 from PFAM, PF02864 from PFAM. By binding to CRB, it becomes a transcriptional activator and can initiate transcription of certain genes. ; GO: 0003700 sequence-specific DNA binding transcription factor activity; PDB: 2KA6_B.
Probab=21.12 E-value=1.1e+02 Score=14.55 Aligned_cols=13 Identities=8% Similarity=0.100 Sum_probs=7.4
Q ss_pred CCCCHHHHHHHHH
Q 037487 1 MVFTEKQEALVNE 13 (151)
Q Consensus 1 m~Lt~~e~~~i~~ 13 (151)
|+||+++-..+..
T Consensus 8 mPMSPddy~~l~~ 20 (23)
T PF12162_consen 8 MPMSPDDYDELER 20 (23)
T ss_dssp --S-HHHHHHHHH
T ss_pred cCCCHHHHHHHHH
Confidence 6788888777654
No 73
>PF12205 GIT1_C: G protein-coupled receptor kinase-interacting protein 1 C term; InterPro: IPR022018 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF01412 from PFAM, PF00023 from PFAM, PF08518 from PFAM. GIT1 plays an important role in cell adhesion, motility, cytoskeletal remodeling and membrane trafficking. To perform this function, it localises p21-activated kinase (PAK) and PAK-interactive exchange factor to focal adhesions. Its activation is regulated by interaction between its paxillin-binding C-terminal and the LD motifs of paxillin. The C-terminal folds into a four helix bundle. ; PDB: 2JX0_A.
Probab=21.05 E-value=2.6e+02 Score=19.12 Aligned_cols=42 Identities=14% Similarity=0.164 Sum_probs=26.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHH
Q 037487 53 NNPKLKAHAVKVFKMTCESAIQLREKGKVTVADTTLKYLGSV 94 (151)
Q Consensus 53 ~~~~~~~H~~~v~~~l~~~i~~l~~~~~l~~~~~~l~~Lg~~ 94 (151)
+.+.|..|+.+|-.++.+++....+.-..+.+...|+.|...
T Consensus 36 ~~~s~~pcae~I~~aV~~m~~LfP~~~~~e~vr~~L~~L~~~ 77 (123)
T PF12205_consen 36 RHDSFAPCAERIRSAVTEMAALFPKDPRSETVRSSLRQLTSS 77 (123)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTS-SSB--HHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHHhCCCccCChHHHHHHHHHHHH
Confidence 456788899999888888665432222224556777777754
No 74
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=20.79 E-value=4.2e+02 Score=20.79 Aligned_cols=40 Identities=5% Similarity=0.060 Sum_probs=28.6
Q ss_pred hhhccccCCchhhcCccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhccc
Q 037487 27 CVSSPQIAPAAKGMFSFLRDSDGIPQNNPKLKAHAVKVFKMTCESAIQLREK 78 (151)
Q Consensus 27 y~~lF~~~P~~~~~F~~~~~~~~~l~~~~~~~~H~~~v~~~l~~~i~~l~~~ 78 (151)
...+|.+||++-.=|. .+|+.|++ ..|..|+.+|..|...
T Consensus 102 lq~If~KHGDIAsNc~---------lkS~~~RS---~yLe~Lc~IIqeLq~t 141 (269)
T PF05278_consen 102 LQKIFEKHGDIASNCK---------LKSQQFRS---YYLECLCDIIQELQST 141 (269)
T ss_pred HHHHHHhCccHhhccc---------cCcHHHHH---HHHHHHHHHHHHHhcC
Confidence 6677888887766554 46778886 4677888888777653
No 75
>PF09660 DUF2397: Protein of unknown function (DUF2397); InterPro: IPR013493 Proteins in this family are encoded within a conserved gene four-gene neighbourhood found sporadically in a phylogenetically broad range of bacteria including: Nocardia farcinica, Symbiobacterium thermophilum, Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1)) and Ralstonia solanacearum (Betaproteobacteria).
Probab=20.74 E-value=3.6e+02 Score=22.91 Aligned_cols=51 Identities=18% Similarity=0.182 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhhCCCCCchHhHHHHHHHHHHHHHhcc--cChh-HHHHHHHHH
Q 037487 85 DTTLKYLGSVHLKNGVLDPHFEVVKEALLRAIKEAVGE--KWRD-MNCTWVEAY 135 (151)
Q Consensus 85 ~~~l~~Lg~~H~~~gv~~~~f~~~~~~ll~~l~~~lg~--~~~~-~~~AW~~~~ 135 (151)
..++..|+.......++++-|-.+++.|+.+|++...+ ...+ ++.+-..+-
T Consensus 164 ~df~~~L~~~~~~~~~~~e~Fl~yKd~Li~YL~~Fv~~L~r~~~~I~~~l~~l~ 217 (486)
T PF09660_consen 164 QDFYASLQSVKAEEDMDTEAFLAYKDALIDYLRRFVQDLQRRAPRIAAALRELE 217 (486)
T ss_pred HHHHHHHHhhhhhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45555666555567799999999999999999998753 3444 555544443
No 76
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=20.48 E-value=1.2e+02 Score=17.46 Aligned_cols=25 Identities=4% Similarity=0.100 Sum_probs=21.7
Q ss_pred CCCCCchHhHHHHHHHHHHHHHhcc
Q 037487 98 NGVLDPHFEVVKEALLRAIKEAVGE 122 (151)
Q Consensus 98 ~gv~~~~f~~~~~~ll~~l~~~lg~ 122 (151)
-|-++++-..+.+++.+++.+.+|.
T Consensus 10 ~Grs~EqK~~L~~~it~a~~~~~~~ 34 (60)
T PRK02289 10 EGRSQEQKNALAREVTEVVSRIAKA 34 (60)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCc
Confidence 3778899999999999999999884
No 77
>PRK00285 ihfA integration host factor subunit alpha; Reviewed
Probab=20.45 E-value=2.4e+02 Score=17.98 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=16.0
Q ss_pred CCCCCchHhHHHHHHHHHHHHHhc
Q 037487 98 NGVLDPHFEVVKEALLRAIKEAVG 121 (151)
Q Consensus 98 ~gv~~~~f~~~~~~ll~~l~~~lg 121 (151)
.+++...-..+-+++++.+.+.|.
T Consensus 16 ~~~s~~~v~~vl~~~~~~i~~~L~ 39 (99)
T PRK00285 16 VGLSKREAKELVELFFEEIRDALE 39 (99)
T ss_pred hCcCHHHHHHHHHHHHHHHHHHHH
Confidence 456666666677777777766663
No 78
>PF08362 TetR_C_3: YcdC-like protein, C-terminal region; InterPro: IPR013573 This entry represents the C-terminal domain found in the hypothetical transcriptional regulators RutR and YcdC (P75899 from SWISSPROT) from Escherichia coli. Both of these proteins are member of the TetR (tetracycline resistance) transcriptional regulator family of proteins. RutR negatively controls the transcription of the rut operon involved in pyrimidine utilization. The C-terminal domains of RutR, YsiA and TetR share a multi-helical, interlocking structure. These proteins also contain helix-turn-helix (HTH) DNA-binding domains.; GO: 0045892 negative regulation of transcription, DNA-dependent; PDB: 3LOC_B.
Probab=20.42 E-value=3.1e+02 Score=19.12 Aligned_cols=119 Identities=16% Similarity=0.103 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhcchhh-----h-------hhhccccCCchhhcCccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhc
Q 037487 9 ALVNESWEILKEISHKI-----A-------CVSSPQIAPAAKGMFSFLRDSDGIPQNNPKLKAHAVKVFKMTCESAIQLR 76 (151)
Q Consensus 9 ~~i~~SW~~v~~~~~~~-----~-------y~~lF~~~P~~~~~F~~~~~~~~~l~~~~~~~~H~~~v~~~l~~~i~~l~ 76 (151)
+-|-+.|.......+.. + +.++-..+|+.-++|-.- .+.+.|.+..+...-+.-. .+
T Consensus 2 ~~il~~W~~~~~~~~~~~dP~~aL~~YI~~k~~~s~~~P~~Srlfa~E-----ii~Gap~L~~~l~~~l~~~------~~ 70 (143)
T PF08362_consen 2 EDILEPWLAALDDIDPEDDPAEALRAYIRAKMEYSRDHPEASRLFANE-----IIQGAPHLKDYLRERLRPW------VD 70 (143)
T ss_dssp HHHHHHHHHHHHC--TTS-HHHHHHHHHHHHHHHHHH-HHHHHHHHHH-----HHTTSTTTHHHHHTHHHHH------HH
T ss_pred HHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHCchhhHHHHHH-----HHcCchhhHHHHHHHHHHH------HH
Confidence 34667777765543221 1 666788899999999862 1134444443322111111 11
Q ss_pred ccCchhhHHHHHHHHHHHHhhCCCCCchHhHHHHHHHHH-------HHHHhcccChh-HHHHHHHHHHHHHHHHHHhh
Q 037487 77 EKGKVTVADTTLKYLGSVHLKNGVLDPHFEVVKEALLRA-------IKEAVGEKWRD-MNCTWVEAYDQLAAAIKAEM 146 (151)
Q Consensus 77 ~~~~l~~~~~~l~~Lg~~H~~~gv~~~~f~~~~~~ll~~-------l~~~lg~~~~~-~~~AW~~~~~~i~~~i~~~~ 146 (151)
. . ...++..-..=.=..|.|.|+-.+--+.... ++..+|. +. .+..+..+-..|...+..|.
T Consensus 71 ~---~---~~~I~~Wi~~G~i~~vdP~hL~f~IWa~TQ~YADf~~Qi~~~~g~--~~~~~~d~e~a~~~v~~liL~g~ 140 (143)
T PF08362_consen 71 R---K---VAVIERWIAQGKIAPVDPEHLFFMIWAMTQHYADFAAQIRAVLGK--SELSEEDFEQAAEFVTALILRGC 140 (143)
T ss_dssp H---H---HHHHHHHHHTTSS-S--HHHHHHHHHHHHHHHHHTHHHHHHHHS----TTSHHHHHHHHHHHHHHHHHHH
T ss_pred H---H---HHHHHHHHHCCCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHhc
Confidence 1 0 1122222221112456666665555555544 4445553 22 45566666677777776664
No 79
>TIGR03031 cas_csx12 CRISPR-associated protein, Csx12 family. Members of this family of CRISPR-associated (cas) protein are found, so far, in CRISPR/cas loci in Wolinella succinogenes DSM 1740, Legionella pneumophila str. Paris, and Francisella tularensis, where the last probably is an example of a degenerate CRISPR locus, having neither repeats nor a functional Cas1. The characteristic repeat length is 37 base pairs and period is about 72. One region of this large protein shows sequence similarity to PFAM model pfam01844, HNH endonuclease.
Probab=20.01 E-value=1.5e+02 Score=26.25 Aligned_cols=45 Identities=11% Similarity=0.047 Sum_probs=36.0
Q ss_pred HHHHHHHHhhCCCCCchHhHHHHHHHHHHHHHhcccChh-HHHHHHHH
Q 037487 88 LKYLGSVHLKNGVLDPHFEVVKEALLRAIKEAVGEKWRD-MNCTWVEA 134 (151)
Q Consensus 88 l~~Lg~~H~~~gv~~~~f~~~~~~ll~~l~~~lg~~~~~-~~~AW~~~ 134 (151)
-.+=|+||..+|....++ +...++..+.+.+|-+|+. .++|-..+
T Consensus 47 ~~Rra~RH~~R~~~R~ql--vKRLf~li~qe~~~l~~d~~~e~aI~~l 92 (802)
T TIGR03031 47 AQRRATRHRVRNKKRNQL--VKRLFLLLFQEILSLDLDAKEETAICHL 92 (802)
T ss_pred cchhhhHHHhhhhHHHHH--HHHHHHHHHHHHhCcccccccHHHHHHH
Confidence 456678999999887764 6788899999999999998 88864443
Done!