BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037494
         (394 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
           Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
           2.6 Angstrom Resolution
          Length = 288

 Score = 28.9 bits (63), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 25/51 (49%)

Query: 338 PSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFP 388
           P L +LSL+N +L E P  +L  L  L  + L+ NS +       GS   P
Sbjct: 148 PKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLP 198


>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
           And The Von Willebrand Factor A1 Domain
          Length = 290

 Score = 28.9 bits (63), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 25/51 (49%)

Query: 338 PSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFP 388
           P L +LSL+N +L E P  +L  L  L  + L+ NS +       GS   P
Sbjct: 148 PKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLP 198


>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
           Domain Of Glycoprotein Ib Alpha
 pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
           Domain Of Glycoprotein Ib Alpha
          Length = 290

 Score = 28.9 bits (63), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 25/51 (49%)

Query: 338 PSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFP 388
           P L +LSL+N +L E P  +L  L  L  + L+ NS +       GS   P
Sbjct: 148 PKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLP 198


>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
           Botrocetin Complex
          Length = 265

 Score = 28.5 bits (62), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 25/51 (49%)

Query: 338 PSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFP 388
           P L +LSL+N +L E P  +L  L  L  + L+ NS +       GS   P
Sbjct: 148 PKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLP 198


>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
           Peptide Inhibitor
          Length = 269

 Score = 28.5 bits (62), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 25/51 (49%)

Query: 338 PSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFP 388
           P L +LSL+N +L E P  +L  L  L  + L+ NS +       GS   P
Sbjct: 148 PKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLP 198


>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
           Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
           Resolution
 pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
           Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
           Resolution
 pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
           Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
           Resolution
          Length = 290

 Score = 28.1 bits (61), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 24/51 (47%)

Query: 338 PSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFP 388
           P L +LSL+N  L E P  +L  L  L  + L+ NS +       GS   P
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLP 198


>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
           Gpib-alpha And Alpha-thrombin At 2.6a
          Length = 279

 Score = 28.1 bits (61), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 24/51 (47%)

Query: 338 PSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFP 388
           P L +LSL+N  L E P  +L  L  L  + L+ NS +       GS   P
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLP 198


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.138    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,165,707
Number of Sequences: 62578
Number of extensions: 345798
Number of successful extensions: 594
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 583
Number of HSP's gapped (non-prelim): 14
length of query: 394
length of database: 14,973,337
effective HSP length: 101
effective length of query: 293
effective length of database: 8,652,959
effective search space: 2535316987
effective search space used: 2535316987
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)