Query 037494
Match_columns 394
No_of_seqs 280 out of 2756
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 12:51:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037494.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037494hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.2E-45 7E-50 372.3 15.8 372 5-391 394-822 (889)
2 PLN03210 Resistant to P. syrin 100.0 4.7E-31 1E-35 281.6 23.7 356 5-393 419-874 (1153)
3 PLN00113 leucine-rich repeat r 99.9 2.8E-22 6.1E-27 213.3 15.7 238 142-393 116-361 (968)
4 PLN00113 leucine-rich repeat r 99.9 2.3E-22 4.9E-27 214.0 14.0 247 121-376 117-370 (968)
5 KOG0444 Cytoskeletal regulator 99.8 4.1E-23 8.9E-28 194.3 -6.8 243 121-375 54-304 (1255)
6 KOG0444 Cytoskeletal regulator 99.8 1E-22 2.2E-27 191.7 -6.1 245 121-378 31-284 (1255)
7 PLN03210 Resistant to P. syrin 99.8 9.5E-18 2.1E-22 179.9 16.9 233 121-371 588-878 (1153)
8 KOG4194 Membrane glycoprotein 99.7 9.7E-19 2.1E-23 163.9 3.4 245 121-374 101-377 (873)
9 KOG4194 Membrane glycoprotein 99.7 3.6E-18 7.8E-23 160.1 4.7 226 143-378 77-333 (873)
10 KOG0472 Leucine-rich repeat pr 99.7 1.6E-20 3.5E-25 168.5 -10.9 222 141-378 65-291 (565)
11 KOG0472 Leucine-rich repeat pr 99.7 7.4E-20 1.6E-24 164.3 -10.9 219 146-378 47-268 (565)
12 KOG0617 Ras suppressor protein 99.7 1E-18 2.2E-23 139.9 -5.7 155 169-329 30-188 (264)
13 KOG0617 Ras suppressor protein 99.7 1.3E-18 2.8E-23 139.3 -5.8 165 136-311 25-194 (264)
14 KOG0618 Serine/threonine phosp 99.6 1.4E-16 3.1E-21 156.7 -1.5 239 123-373 220-487 (1081)
15 PRK15370 E3 ubiquitin-protein 99.6 6.4E-15 1.4E-19 149.1 9.7 180 174-375 243-428 (754)
16 PRK15370 E3 ubiquitin-protein 99.5 1.8E-14 3.9E-19 145.9 10.3 221 123-376 179-402 (754)
17 KOG0618 Serine/threonine phosp 99.5 3.7E-16 7.9E-21 153.9 -4.0 216 170-394 239-482 (1081)
18 PRK15387 E3 ubiquitin-protein 99.5 2E-13 4.4E-18 137.7 12.3 221 121-377 221-460 (788)
19 PRK15387 E3 ubiquitin-protein 99.4 3.2E-12 7E-17 129.1 14.0 214 124-375 203-435 (788)
20 KOG4237 Extracellular matrix p 99.4 3.3E-14 7.2E-19 128.0 -1.5 232 145-392 68-347 (498)
21 cd00116 LRR_RI Leucine-rich re 99.3 2.1E-13 4.5E-18 127.0 1.3 230 144-377 23-293 (319)
22 cd00116 LRR_RI Leucine-rich re 99.3 6.2E-13 1.4E-17 123.8 3.8 226 141-373 48-318 (319)
23 KOG4237 Extracellular matrix p 99.3 8.2E-14 1.8E-18 125.6 -2.9 203 173-377 68-313 (498)
24 KOG4658 Apoptotic ATPase [Sign 99.3 1.8E-12 4E-17 133.4 3.7 200 137-351 516-730 (889)
25 KOG0532 Leucine-rich repeat (L 99.3 2.4E-13 5.3E-18 127.8 -2.9 171 169-349 95-271 (722)
26 KOG0532 Leucine-rich repeat (L 99.2 2.6E-13 5.5E-18 127.6 -3.8 191 170-370 73-268 (722)
27 COG4886 Leucine-rich repeat (L 99.2 4E-11 8.6E-16 115.1 6.8 175 169-351 113-290 (394)
28 COG4886 Leucine-rich repeat (L 99.1 3.8E-11 8.2E-16 115.3 5.4 191 176-376 97-291 (394)
29 KOG3207 Beta-tubulin folding c 99.0 6.1E-11 1.3E-15 108.6 -1.4 83 169-253 118-208 (505)
30 PF14580 LRR_9: Leucine-rich r 98.9 4.4E-10 9.6E-15 93.7 2.6 82 169-254 16-100 (175)
31 PF14580 LRR_9: Leucine-rich r 98.9 4.7E-10 1E-14 93.6 2.3 132 137-276 12-151 (175)
32 KOG1259 Nischarin, modulator o 98.7 2.3E-09 5E-14 94.0 -0.3 99 196-297 285-384 (490)
33 KOG3207 Beta-tubulin folding c 98.7 8.1E-09 1.8E-13 94.9 1.7 174 121-298 120-312 (505)
34 KOG1259 Nischarin, modulator o 98.6 9.1E-09 2E-13 90.3 1.7 130 240-376 283-413 (490)
35 KOG1909 Ran GTPase-activating 98.6 3.6E-09 7.9E-14 94.6 -0.8 230 141-374 27-310 (382)
36 PF00931 NB-ARC: NB-ARC domain 98.5 1.9E-08 4E-13 92.3 -0.2 42 16-57 242-283 (287)
37 PLN03150 hypothetical protein; 98.5 2.7E-07 5.9E-12 93.3 7.6 87 174-261 420-510 (623)
38 KOG1909 Ran GTPase-activating 98.4 1.5E-07 3.2E-12 84.5 2.9 207 167-376 25-284 (382)
39 PF13855 LRR_8: Leucine rich r 98.4 3.5E-07 7.5E-12 62.6 3.7 54 173-226 2-57 (61)
40 PF13855 LRR_8: Leucine rich r 98.4 3.1E-07 6.6E-12 62.9 3.1 60 313-374 1-61 (61)
41 KOG0531 Protein phosphatase 1, 98.4 4.3E-08 9.3E-13 94.6 -1.8 104 169-276 92-197 (414)
42 KOG0531 Protein phosphatase 1, 98.3 4.3E-08 9.4E-13 94.6 -2.5 220 141-376 92-319 (414)
43 PLN03150 hypothetical protein; 98.3 1.7E-06 3.6E-11 87.6 8.6 103 146-253 420-526 (623)
44 PRK15386 type III secretion pr 98.2 4.7E-06 1E-10 78.2 8.4 131 169-322 49-186 (426)
45 PF12799 LRR_4: Leucine Rich r 98.2 1.3E-06 2.8E-11 55.0 3.1 39 173-211 2-40 (44)
46 KOG2120 SCF ubiquitin ligase, 98.1 4.3E-08 9.4E-13 86.0 -7.5 169 196-371 186-372 (419)
47 KOG2120 SCF ubiquitin ligase, 98.1 1.9E-07 4E-12 82.2 -3.8 186 173-365 186-390 (419)
48 PF12799 LRR_4: Leucine Rich r 98.0 6.1E-06 1.3E-10 52.0 3.4 39 195-234 1-40 (44)
49 PRK15386 type III secretion pr 98.0 1.5E-05 3.2E-10 74.9 6.8 129 141-297 49-187 (426)
50 KOG2982 Uncharacterized conser 98.0 2.2E-06 4.7E-11 75.6 1.0 96 148-249 49-154 (418)
51 KOG3665 ZYG-1-like serine/thre 97.9 6E-06 1.3E-10 83.7 2.5 102 195-298 122-231 (699)
52 KOG3665 ZYG-1-like serine/thre 97.8 2.5E-05 5.4E-10 79.3 5.0 107 141-253 145-261 (699)
53 KOG2982 Uncharacterized conser 97.8 1.2E-05 2.6E-10 71.0 2.1 83 141-226 68-154 (418)
54 KOG1859 Leucine-rich repeat pr 97.8 3.7E-07 8.1E-12 89.2 -8.0 121 173-298 165-290 (1096)
55 KOG4579 Leucine-rich repeat (L 97.8 5E-06 1.1E-10 65.0 -0.3 88 169-258 50-139 (177)
56 KOG1859 Leucine-rich repeat pr 97.6 4.3E-07 9.3E-12 88.8 -9.7 113 229-350 175-291 (1096)
57 KOG4579 Leucine-rich repeat (L 97.6 3.8E-06 8.2E-11 65.7 -3.4 103 172-276 27-134 (177)
58 KOG1644 U2-associated snRNP A' 97.4 0.00025 5.4E-09 59.4 5.0 97 198-297 45-150 (233)
59 COG5238 RNA1 Ran GTPase-activa 97.1 0.00039 8.4E-09 60.9 2.9 207 171-380 29-290 (388)
60 KOG1644 U2-associated snRNP A' 96.9 0.0017 3.7E-08 54.6 4.8 102 172-276 42-151 (233)
61 KOG4341 F-box protein containi 96.7 0.00012 2.5E-09 67.8 -3.5 225 141-369 187-459 (483)
62 KOG2123 Uncharacterized conser 96.7 0.00017 3.7E-09 63.3 -2.5 99 142-247 17-123 (388)
63 COG5238 RNA1 Ran GTPase-activa 96.6 0.0025 5.4E-08 56.0 4.5 229 143-376 29-317 (388)
64 KOG2739 Leucine-rich acidic nu 96.6 0.00066 1.4E-08 59.2 0.4 107 261-369 39-150 (260)
65 KOG4341 F-box protein containi 96.4 0.00014 3E-09 67.3 -5.1 224 144-372 138-382 (483)
66 KOG2739 Leucine-rich acidic nu 96.0 0.0031 6.7E-08 55.1 1.7 105 169-276 40-154 (260)
67 PF00560 LRR_1: Leucine Rich R 95.9 0.0031 6.8E-08 33.0 0.8 18 197-214 2-19 (22)
68 KOG2123 Uncharacterized conser 95.7 0.00046 9.9E-09 60.7 -4.9 103 170-276 17-128 (388)
69 PF00560 LRR_1: Leucine Rich R 95.4 0.0057 1.2E-07 32.0 0.6 22 173-194 1-22 (22)
70 KOG3864 Uncharacterized conser 94.6 0.0049 1.1E-07 51.9 -1.8 34 337-370 150-184 (221)
71 PF13504 LRR_7: Leucine rich r 94.2 0.027 5.9E-07 27.3 1.2 16 196-211 2-17 (17)
72 KOG1947 Leucine rich repeat pr 93.7 0.013 2.8E-07 57.7 -1.1 170 193-364 186-389 (482)
73 KOG0473 Leucine-rich repeat pr 93.2 0.0027 5.8E-08 54.5 -5.8 86 165-253 36-122 (326)
74 KOG0473 Leucine-rich repeat pr 91.6 0.0057 1.2E-07 52.6 -5.7 89 186-276 32-122 (326)
75 smart00370 LRR Leucine-rich re 91.5 0.14 3.1E-06 27.7 1.7 19 195-213 2-20 (26)
76 smart00369 LRR_TYP Leucine-ric 91.5 0.14 3.1E-06 27.7 1.7 19 195-213 2-20 (26)
77 PF13306 LRR_5: Leucine rich r 90.0 0.66 1.4E-05 36.3 5.0 12 169-180 9-20 (129)
78 PF13306 LRR_5: Leucine rich r 88.5 1.3 2.9E-05 34.5 5.8 98 142-249 10-111 (129)
79 smart00370 LRR Leucine-rich re 87.6 0.51 1.1E-05 25.4 2.0 20 217-237 1-21 (26)
80 smart00369 LRR_TYP Leucine-ric 87.6 0.51 1.1E-05 25.4 2.0 20 217-237 1-21 (26)
81 KOG3864 Uncharacterized conser 86.7 0.093 2E-06 44.3 -2.0 61 261-322 121-185 (221)
82 KOG1947 Leucine rich repeat pr 82.8 0.21 4.6E-06 49.0 -1.9 112 263-374 186-307 (482)
83 PF13516 LRR_6: Leucine Rich r 74.5 0.22 4.7E-06 26.4 -2.6 14 338-351 2-15 (24)
84 smart00364 LRR_BAC Leucine-ric 70.6 2.9 6.2E-05 22.7 1.2 17 196-212 3-19 (26)
85 smart00365 LRR_SD22 Leucine-ri 70.2 3.5 7.6E-05 22.4 1.5 16 195-210 2-17 (26)
86 KOG3763 mRNA export factor TAP 61.4 2 4.4E-05 42.0 -0.8 83 311-394 216-307 (585)
87 KOG4308 LRR-containing protein 57.2 0.23 4.9E-06 48.7 -8.1 36 172-207 144-184 (478)
88 PF14162 YozD: YozD-like prote 46.4 22 0.00048 22.7 2.3 26 52-77 23-50 (57)
89 smart00368 LRR_RI Leucine rich 46.1 16 0.00034 20.0 1.5 13 196-208 3-15 (28)
90 smart00367 LRR_CC Leucine-rich 41.4 12 0.00026 20.0 0.6 12 338-349 2-13 (26)
91 PF04433 SWIRM: SWIRM domain; 32.6 40 0.00088 24.3 2.3 38 16-53 10-49 (86)
92 PF15385 SARG: Specifically an 24.4 33 0.00071 33.7 0.8 15 17-31 7-21 (497)
93 PRK04841 transcriptional regul 24.0 1.7E+02 0.0038 31.3 6.3 73 18-105 260-332 (903)
94 COG3432 Predicted transcriptio 23.8 2.7E+02 0.0058 20.7 5.2 40 58-100 42-81 (95)
95 PF13463 HTH_27: Winged helix 22.8 1.8E+02 0.0039 19.3 4.1 31 63-93 34-64 (68)
96 PF02082 Rrf2: Transcriptional 22.1 1.3E+02 0.0028 21.3 3.4 50 27-83 12-61 (83)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-45 Score=372.30 Aligned_cols=372 Identities=26% Similarity=0.370 Sum_probs=275.1
Q ss_pred CchhHHHHHHhcccCCCchhhHHHhccccccCCCceechHHHHHHHHhcCCCC-----CChHHHHHHHHHHHHhcCceee
Q 037494 5 GEAILTVWRQIYSVMELPFHLKVYCIYLCVFCPSIEISTRQLCQLWIAEGFIP-----YNSEETAEYYLKELIHRGFIQV 79 (394)
Q Consensus 5 ~~~i~~~lk~~~SY~~L~~~~k~cfl~~~~Fp~~~~i~~~~Li~~wia~gfi~-----~~~~~~~~~~l~~L~~~~ll~~ 79 (394)
++.|+++|| +|||+||.++|.||+|||+|||||+|++++||..||||||+. ..+++.|+.|+++||+++|++.
T Consensus 394 ~~~i~~iLk--lSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~ 471 (889)
T KOG4658|consen 394 EESILPILK--LSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIE 471 (889)
T ss_pred hhhhHHhhh--ccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhh
Confidence 467999999 999999988999999999999999999999999999999996 7889999999999999999998
Q ss_pred eecCCCCcEeEEEcCHHHHHHHHHHhc-----ccCcEEecCCCC--CC----CCceEEEEEEeCCcchhhccCCCCCccE
Q 037494 80 SKRRAGGTIKACYVPSLVYYSLLLVAE-----KTRFVLMPNKEE--ES----LATVKRCFILEDLIEFISLEQSDMYLQS 148 (394)
Q Consensus 80 ~~~~~~g~~~~~~mhdli~~l~~~~~~-----~~~~~~~~~~~~--~~----~~~~r~L~l~~~~~~~~~~~~~~~~lr~ 148 (394)
.... ++..+|+|||++|+||.++++ +++.+...+... .+ +..+|++++..+....++.....+++++
T Consensus 472 ~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~t 549 (889)
T KOG4658|consen 472 ERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRT 549 (889)
T ss_pred cccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccce
Confidence 7754 677899999999999999999 776544432111 11 6688999999888888888888889999
Q ss_pred EEEecCCCccchhcch-hHHhccCCceeEEEcCCCC-CCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc
Q 037494 149 FLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAV-LDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP 226 (394)
Q Consensus 149 L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~-~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~ 226 (394)
|.+.++... ...+ .+||..++.||+||+++|. +.++|++|+.|.+||||+++++.++.+|.++++|..|.+|++.
T Consensus 550 Lll~~n~~~---l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~ 626 (889)
T KOG4658|consen 550 LLLQRNSDW---LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLE 626 (889)
T ss_pred EEEeecchh---hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccc
Confidence 999998631 1123 6777999999999999877 7899999999999999999999999999999999999999999
Q ss_pred -cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccC---CCcchhcCCCCCCC----eEEEeecC
Q 037494 227 -AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPS---SCTPDILSRLPTVQ----TLRISGDL 298 (394)
Q Consensus 227 -~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~---~~~~~~l~~l~~L~----~L~l~~~~ 298 (394)
+..+..+|.....|++||+|.+. ......-...++.+.+|++|....+. ....+.+..+..|. .+.+.++
T Consensus 627 ~~~~l~~~~~i~~~L~~Lr~L~l~-~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~- 704 (889)
T KOG4658|consen 627 VTGRLESIPGILLELQSLRVLRLP-RSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGC- 704 (889)
T ss_pred cccccccccchhhhcccccEEEee-ccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccc-
Confidence 75666666666669999999998 54311111123344444444333222 21112222222222 1111111
Q ss_pred CccccchhhhhcCCCCCcEEEecCC------------------------------CCCCccCC-CCCCCCCCceEEEEec
Q 037494 299 SHYHSGVSKSLCELHKLECLKLVNG------------------------------SKLSRMVL-SEYQFPPSLIQLSLSN 347 (394)
Q Consensus 299 ~~~~~~~~~~l~~~~~L~~L~l~~~------------------------------~~L~~L~p-~~~~~l~~L~~L~L~~ 347 (394)
.....+.++..+.+|+.|.+.+| ..++. + |... +++|+.|.+..
T Consensus 705 --~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~--l~~~~f-~~~L~~l~l~~ 779 (889)
T KOG4658|consen 705 --SKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRD--LTWLLF-APHLTSLSLVS 779 (889)
T ss_pred --ccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccc--cchhhc-cCcccEEEEec
Confidence 22233333444444444444442 22222 3 5544 89999999999
Q ss_pred ccCCCCCcccccCCCCCCeEEEecccccCceeEEeCCCCCcCCc
Q 037494 348 TELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQ 391 (394)
Q Consensus 348 ~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~fp~L~ 391 (394)
|.....+++....+..++.+.+..+.+.+..+.+. .++||++.
T Consensus 780 ~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~-l~~l~~i~ 822 (889)
T KOG4658|consen 780 CRLLEDIIPKLKALLELKELILPFNKLEGLRMLCS-LGGLPQLY 822 (889)
T ss_pred ccccccCCCHHHHhhhcccEEecccccccceeeec-CCCCceeE
Confidence 98877888877777778877777777777765555 56666554
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.98 E-value=4.7e-31 Score=281.59 Aligned_cols=356 Identities=21% Similarity=0.166 Sum_probs=223.0
Q ss_pred CchhHHHHHHhcccCCCchh-hHHHhccccccCCCceechHHHHHHHHhcCCCCCChHHHHHHHHHHHHhcCceeeeecC
Q 037494 5 GEAILTVWRQIYSVMELPFH-LKVYCIYLCVFCPSIEISTRQLCQLWIAEGFIPYNSEETAEYYLKELIHRGFIQVSKRR 83 (394)
Q Consensus 5 ~~~i~~~lk~~~SY~~L~~~-~k~cfl~~~~Fp~~~~i~~~~Li~~wia~gfi~~~~~~~~~~~l~~L~~~~ll~~~~~~ 83 (394)
+++|.++|| +||++|+++ .|.||+||||||+++.+ +.|..|.|++... ++..++.|++++|+++..
T Consensus 419 ~~~I~~~L~--~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~------~~~~l~~L~~ksLi~~~~-- 485 (1153)
T PLN03210 419 DGKIEKTLR--VSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLD------VNIGLKNLVDKSLIHVRE-- 485 (1153)
T ss_pred cHHHHHHHH--HhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCC------chhChHHHHhcCCEEEcC--
Confidence 457999999 999999875 99999999999998653 4477777766541 344589999999998754
Q ss_pred CCCcEeEEEcCHHHHHHHHHHhcccC-------cEEecC------CCCCCCCceEEEEEEeCCcchhh----ccCCCCCc
Q 037494 84 AGGTIKACYVPSLVYYSLLLVAEKTR-------FVLMPN------KEEESLATVKRCFILEDLIEFIS----LEQSDMYL 146 (394)
Q Consensus 84 ~~g~~~~~~mhdli~~l~~~~~~~~~-------~~~~~~------~~~~~~~~~r~L~l~~~~~~~~~----~~~~~~~l 146 (394)
..++|||++++||+++++++. +..... .......+++.+++.......+. ....+.+|
T Consensus 486 -----~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L 560 (1153)
T PLN03210 486 -----DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNL 560 (1153)
T ss_pred -----CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccc
Confidence 248999999999999998763 110000 00000345666665533322211 11456666
Q ss_pred cEEEEecCCCcc--------------------------chhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEE
Q 037494 147 QSFLNHSSESDH--------------------------LALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYL 200 (394)
Q Consensus 147 r~L~l~~~~~~~--------------------------~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 200 (394)
+.|.+..+.... .....+|.. -...+|+.|+++++.++.+|..+..+++|++|
T Consensus 561 ~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~-f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L 639 (1153)
T PLN03210 561 LFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSN-FRPENLVKLQMQGSKLEKLWDGVHSLTGLRNI 639 (1153)
T ss_pred cEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCc-CCccCCcEEECcCccccccccccccCCCCCEE
Confidence 666664332100 000122322 13567777888887777777777888888888
Q ss_pred ecCCC-CCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCC-CCCCCCCCCCCCcCceeCccccC-
Q 037494 201 QLNIP-TLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITL-PAPPKNYSSSLKNLIFISALHPS- 276 (394)
Q Consensus 201 ~l~~~-~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~-~~~~p~~l~~l~~L~~L~~~~~~- 276 (394)
+++++ .++.+| .++.+++|++|+++ |..+..+|.+++.+++|+.|+++ +|. +..+|..+ ++++|+.|.+.+|.
T Consensus 640 ~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~-~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~ 716 (1153)
T PLN03210 640 DLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS-RCENLEILPTGI-NLKSLYRLNLSGCSR 716 (1153)
T ss_pred ECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCC-CCCCcCccCCcC-CCCCCCEEeCCCCCC
Confidence 88875 466676 57778888888888 76778888888888888888888 776 77777665 67888888887765
Q ss_pred -CCcchhcC-------------------CC-------------------------------CCCCeEEEeecCCccccch
Q 037494 277 -SCTPDILS-------------------RL-------------------------------PTVQTLRISGDLSHYHSGV 305 (394)
Q Consensus 277 -~~~~~~l~-------------------~l-------------------------------~~L~~L~l~~~~~~~~~~~ 305 (394)
...+.... .+ ++|+.|++++|. ....+
T Consensus 717 L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~--~l~~l 794 (1153)
T PLN03210 717 LKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIP--SLVEL 794 (1153)
T ss_pred ccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCC--Ccccc
Confidence 11111000 01 133344444443 34445
Q ss_pred hhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccccCceeEEeCC
Q 037494 306 SKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGS 384 (394)
Q Consensus 306 ~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 384 (394)
|.+++.+++|+.|++++|++++.+ | .+ . +++|+.|++++|... ..++. ..++|+.|++++|.+..... . .
T Consensus 795 P~si~~L~~L~~L~Ls~C~~L~~L-P~~~-~-L~sL~~L~Ls~c~~L-~~~p~--~~~nL~~L~Ls~n~i~~iP~--s-i 865 (1153)
T PLN03210 795 PSSIQNLHKLEHLEIENCINLETL-PTGI-N-LESLESLDLSGCSRL-RTFPD--ISTNISDLNLSRTGIEEVPW--W-I 865 (1153)
T ss_pred ChhhhCCCCCCEEECCCCCCcCee-CCCC-C-ccccCEEECCCCCcc-ccccc--cccccCEeECCCCCCccChH--H-H
Confidence 666666666666666666666666 5 33 4 566666666666421 11111 23567777776666554321 1 2
Q ss_pred CCCcCCccc
Q 037494 385 GGFPELQVL 393 (394)
Q Consensus 385 ~~fp~L~~L 393 (394)
..+++|++|
T Consensus 866 ~~l~~L~~L 874 (1153)
T PLN03210 866 EKFSNLSFL 874 (1153)
T ss_pred hcCCCCCEE
Confidence 346666655
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=2.8e-22 Score=213.34 Aligned_cols=238 Identities=21% Similarity=0.235 Sum_probs=150.6
Q ss_pred CCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCC-CCcccccCcccccEEecCCCCCc-cccccccCCCC
Q 037494 142 SDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLD-QFPPGLENLFLLKYLQLNIPTLK-CLPLLICTLLN 219 (394)
Q Consensus 142 ~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~l~-~lp~~l~~l~~ 219 (394)
.+++||.|.+.++.... .++ . ..+++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..++++++
T Consensus 116 ~l~~L~~L~Ls~n~l~~----~~p-~-~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 189 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTG----SIP-R-GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTS 189 (968)
T ss_pred cCCCCCEEECcCCcccc----ccC-c-cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcC
Confidence 45555555555544431 111 1 34556666666666654 55666667777777777776654 56666677777
Q ss_pred CcEEEcc-cCCccccchhhccCccCcEEEeeCCCC-CCCCCCCCCCCCcCceeCccccC--CCcchhcCCCCCCCeEEEe
Q 037494 220 LETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITL-PAPPKNYSSSLKNLIFISALHPS--SCTPDILSRLPTVQTLRIS 295 (394)
Q Consensus 220 L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~-~~~~p~~l~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~ 295 (394)
|++|+++ |.....+|..++++++|++|+++ +|. ...+|..++.+++|++|++.++. ...+..++.+++|+.|+++
T Consensus 190 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~-~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 268 (968)
T PLN00113 190 LEFLTLASNQLVGQIPRELGQMKSLKWIYLG-YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLY 268 (968)
T ss_pred CCeeeccCCCCcCcCChHHcCcCCccEEECc-CCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECc
Confidence 7777776 63334566667777777777777 666 34566666777777777776665 4556667777777777777
Q ss_pred ecCCccccchhhhhcCCCCCcEEEecCCCCCC-ccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEeccc
Q 037494 296 GDLSHYHSGVSKSLCELHKLECLKLVNGSKLS-RMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNS 373 (394)
Q Consensus 296 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~-~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~ 373 (394)
+|. ..+.+|.++..+++|+.|++++ +++. .+ | ++.. +++|+.|++++|.+....+..++.+++|+.|++++|.
T Consensus 269 ~n~--l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~-p~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 343 (968)
T PLN00113 269 QNK--LSGPIPPSIFSLQKLISLDLSD-NSLSGEI-PELVIQ-LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343 (968)
T ss_pred CCe--eeccCchhHhhccCcCEEECcC-CeeccCC-ChhHcC-CCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCC
Confidence 665 4555666667777777777766 3333 34 6 6777 7888888888887766666677788888888887777
Q ss_pred ccCceeEEeCCCCCcCCccc
Q 037494 374 YFGRKLACVGSGGFPELQVL 393 (394)
Q Consensus 374 ~~~~~~~~~~~~~fp~L~~L 393 (394)
+.+..... .+.+++|+.|
T Consensus 344 l~~~~p~~--l~~~~~L~~L 361 (968)
T PLN00113 344 FSGEIPKN--LGKHNNLTVL 361 (968)
T ss_pred CcCcCChH--HhCCCCCcEE
Confidence 66543211 1345556554
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=2.3e-22 Score=214.04 Aligned_cols=247 Identities=20% Similarity=0.219 Sum_probs=190.4
Q ss_pred CCceEEEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCC-CCcccccCcccccE
Q 037494 121 LATVKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLD-QFPPGLENLFLLKY 199 (394)
Q Consensus 121 ~~~~r~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~ 199 (394)
...+|+|.+..+..........+++|++|.+.++.... .++..+..+++|++|++++|.+. .+|..++++++|++
T Consensus 117 l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 192 (968)
T PLN00113 117 SSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSG----EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF 192 (968)
T ss_pred CCCCCEEECcCCccccccCccccCCCCEEECcCCcccc----cCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCe
Confidence 45778888875554433333567889999999887752 34444488999999999999876 77888999999999
Q ss_pred EecCCCCCc-cccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCC-CCCCCCCCCCCCcCceeCccccC
Q 037494 200 LQLNIPTLK-CLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITL-PAPPKNYSSSLKNLIFISALHPS 276 (394)
Q Consensus 200 L~l~~~~l~-~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~-~~~~p~~l~~l~~L~~L~~~~~~ 276 (394)
|++++|.+. .+|..++++.+|++|+++ |.....+|..++++++|++|+++ +|. ...+|..++++++|++|.+..+.
T Consensus 193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~-~n~l~~~~p~~l~~l~~L~~L~L~~n~ 271 (968)
T PLN00113 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV-YNNLTGPIPSSLGNLKNLQYLFLYQNK 271 (968)
T ss_pred eeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECc-CceeccccChhHhCCCCCCEEECcCCe
Confidence 999998776 578888999999999999 73445788889999999999998 887 45677888899999999988877
Q ss_pred --CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCC
Q 037494 277 --SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMED 353 (394)
Q Consensus 277 --~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~ 353 (394)
...+..+..+++|+.|++++|. ..+.+|..+..+++|+.|+++++.-...+ | ++.. +++|+.|++++|.+...
T Consensus 272 l~~~~p~~l~~l~~L~~L~Ls~n~--l~~~~p~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~-l~~L~~L~L~~n~l~~~ 347 (968)
T PLN00113 272 LSGPIPPSIFSLQKLISLDLSDNS--LSGEIPELVIQLQNLEILHLFSNNFTGKI-PVALTS-LPRLQVLQLWSNKFSGE 347 (968)
T ss_pred eeccCchhHhhccCcCEEECcCCe--eccCCChhHcCCCCCcEEECCCCccCCcC-ChhHhc-CCCCCEEECcCCCCcCc
Confidence 5677788888899999998886 56677778888888888888873322334 6 6666 77788888887777666
Q ss_pred CcccccCCCCCCeEEEecccccC
Q 037494 354 PMPMLERLPRLQVMKLKRNSYFG 376 (394)
Q Consensus 354 ~~~~l~~l~~L~~L~l~~n~~~~ 376 (394)
.+..++.+++|+.|++++|.+.+
T Consensus 348 ~p~~l~~~~~L~~L~Ls~n~l~~ 370 (968)
T PLN00113 348 IPKNLGKHNNLTVLDLSTNNLTG 370 (968)
T ss_pred CChHHhCCCCCcEEECCCCeeEe
Confidence 66667777777777777766543
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.83 E-value=4.1e-23 Score=194.32 Aligned_cols=243 Identities=18% Similarity=0.202 Sum_probs=179.2
Q ss_pred CCceEEEEEEeCCcchhhcc-CCCCCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCCcccccCccccc
Q 037494 121 LATVKRCFILEDLIEFISLE-QSDMYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLK 198 (394)
Q Consensus 121 ~~~~r~L~l~~~~~~~~~~~-~~~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~ 198 (394)
..++.||++.-+....+... ..++.||++.+.++.... ..+ +++ .+++.|.+|+|+.|++.+.|..+.+.+++-
T Consensus 54 lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKn---sGiP~di-F~l~dLt~lDLShNqL~EvP~~LE~AKn~i 129 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKN---SGIPTDI-FRLKDLTILDLSHNQLREVPTNLEYAKNSI 129 (1255)
T ss_pred HhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhcccccc---CCCCchh-cccccceeeecchhhhhhcchhhhhhcCcE
Confidence 34566777665665555444 778899999888887762 344 566 789999999999999999999999999999
Q ss_pred EEecCCCCCccccccc-cCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCC-CCCCCCCcCceeCcccc
Q 037494 199 YLQLNIPTLKCLPLLI-CTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPK-NYSSSLKNLIFISALHP 275 (394)
Q Consensus 199 ~L~l~~~~l~~lp~~l-~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~~~~~ 275 (394)
.|+|++|.|..+|..+ -+|..|-+|||+ | .++.+|+.+.++..|++|.++ +|++..+- ..+-.+++|++|.+++.
T Consensus 130 VLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls-~NPL~hfQLrQLPsmtsL~vLhms~T 207 (1255)
T KOG0444|consen 130 VLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLS-NNPLNHFQLRQLPSMTSLSVLHMSNT 207 (1255)
T ss_pred EEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcC-CChhhHHHHhcCccchhhhhhhcccc
Confidence 9999999999999775 478889999999 7 999999999999999999999 88733221 23446778888888777
Q ss_pred C---CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCCCCCCCCCCceEEEEecccCCC
Q 037494 276 S---SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLIQLSLSNTELME 352 (394)
Q Consensus 276 ~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p~~~~~l~~L~~L~L~~~~l~~ 352 (394)
. ..+|.++..+.+|+.++++.| ....+|+.+.++++|+.|+|++ +.+++|....+. -.+|+.|+++.|+++
T Consensus 208 qRTl~N~Ptsld~l~NL~dvDlS~N---~Lp~vPecly~l~~LrrLNLS~-N~iteL~~~~~~-W~~lEtLNlSrNQLt- 281 (1255)
T KOG0444|consen 208 QRTLDNIPTSLDDLHNLRDVDLSEN---NLPIVPECLYKLRNLRRLNLSG-NKITELNMTEGE-WENLETLNLSRNQLT- 281 (1255)
T ss_pred cchhhcCCCchhhhhhhhhcccccc---CCCcchHHHhhhhhhheeccCc-CceeeeeccHHH-Hhhhhhhccccchhc-
Confidence 6 678888888899999999888 6778888888889999999988 555555213333 345555555555542
Q ss_pred CCcccccCCCCCCeEEEeccccc
Q 037494 353 DPMPMLERLPRLQVMKLKRNSYF 375 (394)
Q Consensus 353 ~~~~~l~~l~~L~~L~l~~n~~~ 375 (394)
..+..+.+|+.|+.|.+.+|+..
T Consensus 282 ~LP~avcKL~kL~kLy~n~NkL~ 304 (1255)
T KOG0444|consen 282 VLPDAVCKLTKLTKLYANNNKLT 304 (1255)
T ss_pred cchHHHhhhHHHHHHHhccCccc
Confidence 22334555555555555444443
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=1e-22 Score=191.69 Aligned_cols=245 Identities=17% Similarity=0.165 Sum_probs=212.2
Q ss_pred CCceEEEEEEeCCcchhhcc-CCCCCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCC--CCcccccCccc
Q 037494 121 LATVKRCFILEDLIEFISLE-QSDMYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLD--QFPPGLENLFL 196 (394)
Q Consensus 121 ~~~~r~L~l~~~~~~~~~~~-~~~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~--~lp~~i~~l~~ 196 (394)
+..++.|.+.......+|+. ..+.+|..|.+..+... .+ ..+ +.++.||.+.+..|.+. .+|+.|..+..
T Consensus 31 Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~-----~vhGEL-s~Lp~LRsv~~R~N~LKnsGiP~diF~l~d 104 (1255)
T KOG0444|consen 31 MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLI-----SVHGEL-SDLPRLRSVIVRDNNLKNSGIPTDIFRLKD 104 (1255)
T ss_pred hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhH-----hhhhhh-ccchhhHHHhhhccccccCCCCchhccccc
Confidence 56788888887777788877 77888999888888775 33 555 88999999999999976 88999999999
Q ss_pred ccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchh-hccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccc
Q 037494 197 LKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEG-IWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALH 274 (394)
Q Consensus 197 L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~ 274 (394)
|..|+|++|.+++.|..+..-.++-+|+|+ | +|+++|.. +.+++.|-.|+++ +|.+..+|+.+..|..||+|.+++
T Consensus 105 Lt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS-~NrLe~LPPQ~RRL~~LqtL~Ls~ 182 (1255)
T KOG0444|consen 105 LTILDLSHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLS-NNRLEMLPPQIRRLSMLQTLKLSN 182 (1255)
T ss_pred ceeeecchhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccc-cchhhhcCHHHHHHhhhhhhhcCC
Confidence 999999999999999999999999999999 8 99999975 5689999999999 999999999999999999999999
Q ss_pred cC--CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCC
Q 037494 275 PS--SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELM 351 (394)
Q Consensus 275 ~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~ 351 (394)
++ ......+..|++|+.|.+++.. .....+|.++..+.+|..++++. ++|..+ | .+.. +++|+.|+|++|+++
T Consensus 183 NPL~hfQLrQLPsmtsL~vLhms~Tq-RTl~N~Ptsld~l~NL~dvDlS~-N~Lp~v-Pecly~-l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 183 NPLNHFQLRQLPSMTSLSVLHMSNTQ-RTLDNIPTSLDDLHNLRDVDLSE-NNLPIV-PECLYK-LRNLRRLNLSGNKIT 258 (1255)
T ss_pred ChhhHHHHhcCccchhhhhhhccccc-chhhcCCCchhhhhhhhhccccc-cCCCcc-hHHHhh-hhhhheeccCcCcee
Confidence 98 5566778888889999998775 24557889999999999999998 888888 9 8888 999999999999986
Q ss_pred CCCcccccCCCCCCeEEEecccccCce
Q 037494 352 EDPMPMLERLPRLQVMKLKRNSYFGRK 378 (394)
Q Consensus 352 ~~~~~~l~~l~~L~~L~l~~n~~~~~~ 378 (394)
...+ ..+...+|+.|++|+|..+...
T Consensus 259 eL~~-~~~~W~~lEtLNlSrNQLt~LP 284 (1255)
T KOG0444|consen 259 ELNM-TEGEWENLETLNLSRNQLTVLP 284 (1255)
T ss_pred eeec-cHHHHhhhhhhccccchhccch
Confidence 5443 3567789999999999877544
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.76 E-value=9.5e-18 Score=179.87 Aligned_cols=233 Identities=19% Similarity=0.202 Sum_probs=153.3
Q ss_pred CCceEEEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCC-CCCCcccccCccccc
Q 037494 121 LATVKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAV-LDQFPPGLENLFLLK 198 (394)
Q Consensus 121 ~~~~r~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~-~~~lp~~i~~l~~L~ 198 (394)
+.++|.|.+..+....+|......+|+.|.+.++... .+ ..+ ..+++|++|+++++. +..+|. ++.+++|+
T Consensus 588 p~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~-----~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le 660 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLE-----KLWDGV-HSLTGLRNIDLRGSKNLKEIPD-LSMATNLE 660 (1153)
T ss_pred CcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccc-----cccccc-ccCCCCCEEECCCCCCcCcCCc-cccCCccc
Confidence 4567777777555566666556677777777766554 23 223 667777777777665 445553 66677777
Q ss_pred EEecCCC-CCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCC---------------------CC
Q 037494 199 YLQLNIP-TLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITL---------------------PA 255 (394)
Q Consensus 199 ~L~l~~~-~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~---------------------~~ 255 (394)
.|++++| .+..+|..++++++|+.|+++ |..+..+|..+ ++++|+.|+++ +|. +.
T Consensus 661 ~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Ls-gc~~L~~~p~~~~nL~~L~L~~n~i~ 738 (1153)
T PLN03210 661 TLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLS-GCSRLKSFPDISTNISWLDLDETAIE 738 (1153)
T ss_pred EEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCC-CCCCccccccccCCcCeeecCCCccc
Confidence 7777765 466677777777777777777 66667776654 56666666666 553 23
Q ss_pred CCCCCCCCC-------------------------------CcCceeCccccC--CCcchhcCCCCCCCeEEEeecCCccc
Q 037494 256 PPKNYSSSL-------------------------------KNLIFISALHPS--SCTPDILSRLPTVQTLRISGDLSHYH 302 (394)
Q Consensus 256 ~~p~~l~~l-------------------------------~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~ 302 (394)
.+|..+ .+ ++|+.|.+.+|. ...|.+++.+++|+.|++++|. ..
T Consensus 739 ~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~--~L 815 (1153)
T PLN03210 739 EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCI--NL 815 (1153)
T ss_pred cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCC--Cc
Confidence 333321 11 245556666554 5577889999999999999987 67
Q ss_pred cchhhhhcCCCCCcEEEecCCCCCCccCCCCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEec
Q 037494 303 SGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKR 371 (394)
Q Consensus 303 ~~~~~~l~~~~~L~~L~l~~~~~L~~L~p~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~ 371 (394)
+.+|..+ .+++|+.|++++|+++..+ |.+ .++|+.|+|++|.+.. .+..+..+++|+.|++++
T Consensus 816 ~~LP~~~-~L~sL~~L~Ls~c~~L~~~-p~~---~~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~L~~ 878 (1153)
T PLN03210 816 ETLPTGI-NLESLESLDLSGCSRLRTF-PDI---STNISDLNLSRTGIEE-VPWWIEKFSNLSFLDMNG 878 (1153)
T ss_pred CeeCCCC-CccccCEEECCCCCccccc-ccc---ccccCEeECCCCCCcc-ChHHHhcCCCCCEEECCC
Confidence 7777665 6889999999998777766 421 3467777777776643 334566677777777755
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.73 E-value=9.7e-19 Score=163.90 Aligned_cols=245 Identities=18% Similarity=0.158 Sum_probs=145.2
Q ss_pred CCceEEEEEEeCCcchhhcc-CCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCc-ccccCccccc
Q 037494 121 LATVKRCFILEDLIEFISLE-QSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFP-PGLENLFLLK 198 (394)
Q Consensus 121 ~~~~r~L~l~~~~~~~~~~~-~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~ 198 (394)
..++..+.+..+....+|.. ....++..|.+..+.+...++ .++ .-++.||+|||+.|.++++| +++..-.+++
T Consensus 101 l~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~s---e~L-~~l~alrslDLSrN~is~i~~~sfp~~~ni~ 176 (873)
T KOG4194|consen 101 LPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTS---EEL-SALPALRSLDLSRNLISEIPKPSFPAKVNIK 176 (873)
T ss_pred CCcceeeeeccchhhhcccccccccceeEEeeeccccccccH---HHH-HhHhhhhhhhhhhchhhcccCCCCCCCCCce
Confidence 44566666666666667766 444558888888877763222 333 66778888888888888776 5566667888
Q ss_pred EEecCCCCCcccc-ccccCCCCCcEEEcc-cCCccccchh-hccCccCcEEEeeCCCCCCCC-CCCCCCCCcCceeCccc
Q 037494 199 YLQLNIPTLKCLP-LLICTLLNLETLEMP-AGYIDHSPEG-IWMMQKLMHLNFDSITLPAPP-KNYSSSLKNLIFISALH 274 (394)
Q Consensus 199 ~L~l~~~~l~~lp-~~l~~l~~L~~L~l~-~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~~~~ 274 (394)
+|+|++|.|+.+- ..+..+.+|.+|.|+ | .+..+|.- +.+|++|+.|++. .|.+..+ --.+..|.+|+.|.+..
T Consensus 177 ~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLn-rN~irive~ltFqgL~Sl~nlklqr 254 (873)
T KOG4194|consen 177 KLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLN-RNRIRIVEGLTFQGLPSLQNLKLQR 254 (873)
T ss_pred EEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhcc-ccceeeehhhhhcCchhhhhhhhhh
Confidence 8888888888764 346677888888888 7 88888864 4558888888888 7764433 23456667777776666
Q ss_pred cC-CCc-chhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCC-----------------------CCCCcc
Q 037494 275 PS-SCT-PDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNG-----------------------SKLSRM 329 (394)
Q Consensus 275 ~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----------------------~~L~~L 329 (394)
++ ... -..+-.+.+++.|++..|. ....-..++-+++.|+.|+++.+ +++.+|
T Consensus 255 N~I~kL~DG~Fy~l~kme~l~L~~N~--l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l 332 (873)
T KOG4194|consen 255 NDISKLDDGAFYGLEKMEHLNLETNR--LQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRL 332 (873)
T ss_pred cCcccccCcceeeecccceeecccch--hhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccC
Confidence 65 111 1123334445555555543 22222233344444444444440 444444
Q ss_pred CC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccc
Q 037494 330 VL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSY 374 (394)
Q Consensus 330 ~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~ 374 (394)
.| .+.. ++.|+.|.|+.|.+....-..+..+.+|+.|+|++|.+
T Consensus 333 ~~~sf~~-L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~l 377 (873)
T KOG4194|consen 333 DEGSFRV-LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNEL 377 (873)
T ss_pred ChhHHHH-HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeE
Confidence 22 4444 44555555555544333333344555555555555543
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.72 E-value=3.6e-18 Score=160.11 Aligned_cols=226 Identities=19% Similarity=0.172 Sum_probs=150.3
Q ss_pred CCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCcccc-ccccCCCCCc
Q 037494 143 DMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLP-LLICTLLNLE 221 (394)
Q Consensus 143 ~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp-~~l~~l~~L~ 221 (394)
.+..++|.+.++... .+++..| .++++|+.+++.+|.++.+|...+...||+.|+|.+|.|.++. +++..++.|+
T Consensus 77 p~~t~~LdlsnNkl~---~id~~~f-~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alr 152 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLS---HIDFEFF-YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALR 152 (873)
T ss_pred ccceeeeeccccccc---cCcHHHH-hcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhh
Confidence 456677888777665 3333444 8888888888888888888877777777888888888777654 4466677778
Q ss_pred EEEcc-cCCccccch-hhccCccCcEEEeeCCCCCCCCCC-CCCCCCcCceeCccccC--CCcchhcCCCCCCCeEEEee
Q 037494 222 TLEMP-AGYIDHSPE-GIWMMQKLMHLNFDSITLPAPPKN-YSSSLKNLIFISALHPS--SCTPDILSRLPTVQTLRISG 296 (394)
Q Consensus 222 ~L~l~-~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~ 296 (394)
+|||+ | .+.++|. ++..=.++++|+++ +|.+..+-. .+.++.+|.+|.++.+. .-.+..+.++++|+.|++..
T Consensus 153 slDLSrN-~is~i~~~sfp~~~ni~~L~La-~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 153 SLDLSRN-LISEIPKPSFPAKVNIKKLNLA-SNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR 230 (873)
T ss_pred hhhhhhc-hhhcccCCCCCCCCCceEEeec-cccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccc
Confidence 88887 7 7777763 34455667777777 776555543 35666677777777666 22334556677777777666
Q ss_pred cCCccccchhhhhcCCC------------------------CCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCC
Q 037494 297 DLSHYHSGVSKSLCELH------------------------KLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELM 351 (394)
Q Consensus 297 ~~~~~~~~~~~~l~~~~------------------------~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~ 351 (394)
|. ....--..|..++ +++.|+|.. +++..+.. |+.. ++.|+.|+++.|.+.
T Consensus 231 N~--irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~-N~l~~vn~g~lfg-Lt~L~~L~lS~NaI~ 306 (873)
T KOG4194|consen 231 NR--IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLET-NRLQAVNEGWLFG-LTSLEQLDLSYNAIQ 306 (873)
T ss_pred cc--eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeeccc-chhhhhhcccccc-cchhhhhccchhhhh
Confidence 64 1111112334444 444444444 44444423 7777 888888888888887
Q ss_pred CCCcccccCCCCCCeEEEecccccCce
Q 037494 352 EDPMPMLERLPRLQVMKLKRNSYFGRK 378 (394)
Q Consensus 352 ~~~~~~l~~l~~L~~L~l~~n~~~~~~ 378 (394)
...+..+...++|+.|+|+.|.+....
T Consensus 307 rih~d~WsftqkL~~LdLs~N~i~~l~ 333 (873)
T KOG4194|consen 307 RIHIDSWSFTQKLKELDLSSNRITRLD 333 (873)
T ss_pred eeecchhhhcccceeEeccccccccCC
Confidence 777788888888888888888766543
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.71 E-value=1.6e-20 Score=168.50 Aligned_cols=222 Identities=20% Similarity=0.201 Sum_probs=143.9
Q ss_pred CCCCCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCC
Q 037494 141 QSDMYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLN 219 (394)
Q Consensus 141 ~~~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~ 219 (394)
..+..+.++.+.++... .+ +++ +++..+..++.+.|++.++|+.++.+..|+.++.+.|.++++|++++.+..
T Consensus 65 ~nL~~l~vl~~~~n~l~-----~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~ 138 (565)
T KOG0472|consen 65 KNLACLTVLNVHDNKLS-----QLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLD 138 (565)
T ss_pred hcccceeEEEeccchhh-----hCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhh
Confidence 55666777777776664 34 444 777777777777777777777777777777777777777777777777777
Q ss_pred CcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccC-CCcchhcCCCCCCCeEEEeec
Q 037494 220 LETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPS-SCTPDILSRLPTVQTLRISGD 297 (394)
Q Consensus 220 L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~ 297 (394)
|+.|+.. | ++.++|++++.+.+|..+++. ++....+|+..-+++.|+.|+...+- +..|++++.|.+|..|++..|
T Consensus 139 l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~-~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~N 216 (565)
T KOG0472|consen 139 LEDLDATNN-QISSLPEDMVNLSKLSKLDLE-GNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRN 216 (565)
T ss_pred hhhhhcccc-ccccCchHHHHHHHHHHhhcc-ccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhc
Confidence 7777777 6 777777777777666666666 66666666655456666666655554 666666666666666666666
Q ss_pred CCccccchhhhhcCCCCCcEEEecCCCCCCccCC--CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEeccccc
Q 037494 298 LSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL--SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYF 375 (394)
Q Consensus 298 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p--~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~ 375 (394)
+ ...+| +|.+++.|.+|+++. ++++.+ | ..+. ++++..||+++|+++. .+..+..+.+|.+|++++|.++
T Consensus 217 k---i~~lP-ef~gcs~L~Elh~g~-N~i~~l-pae~~~~-L~~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN~is 288 (565)
T KOG0472|consen 217 K---IRFLP-EFPGCSLLKELHVGE-NQIEML-PAEHLKH-LNSLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNNDIS 288 (565)
T ss_pred c---cccCC-CCCccHHHHHHHhcc-cHHHhh-HHHHhcc-cccceeeecccccccc-CchHHHHhhhhhhhcccCCccc
Confidence 3 33344 555566666666554 555555 5 2334 6666666666666533 2344555666666666666555
Q ss_pred Cce
Q 037494 376 GRK 378 (394)
Q Consensus 376 ~~~ 378 (394)
+..
T Consensus 289 ~Lp 291 (565)
T KOG0472|consen 289 SLP 291 (565)
T ss_pred cCC
Confidence 544
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.68 E-value=7.4e-20 Score=164.33 Aligned_cols=219 Identities=21% Similarity=0.226 Sum_probs=193.7
Q ss_pred ccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEE
Q 037494 146 LQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLE 224 (394)
Q Consensus 146 lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~ 224 (394)
+..+.+..+... .+ +++ .++..|.+|++..|.+.++|++++.+..++.++.++|++.++|+.++.+.+|..|+
T Consensus 47 l~~lils~N~l~-----~l~~dl-~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 47 LQKLILSHNDLE-----VLREDL-KNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLD 120 (565)
T ss_pred hhhhhhccCchh-----hccHhh-hcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhh
Confidence 455566666554 33 777 89999999999999999999999999999999999999999999999999999999
Q ss_pred cc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccC-CCcchhcCCCCCCCeEEEeecCCccc
Q 037494 225 MP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPS-SCTPDILSRLPTVQTLRISGDLSHYH 302 (394)
Q Consensus 225 l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~ 302 (394)
.+ + .+.++|++++.+-.|..++.. +|....+|++++++.+|..|.+.++. ...++..-.++.|++|+...| ..
T Consensus 121 ~s~n-~~~el~~~i~~~~~l~dl~~~-~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N---~L 195 (565)
T KOG0472|consen 121 CSSN-ELKELPDSIGRLLDLEDLDAT-NNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN---LL 195 (565)
T ss_pred cccc-ceeecCchHHHHhhhhhhhcc-ccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh---hh
Confidence 99 8 899999999999999999999 99999999999999999999888887 556655555999999998877 78
Q ss_pred cchhhhhcCCCCCcEEEecCCCCCCccCCCCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccccCce
Q 037494 303 SGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRK 378 (394)
Q Consensus 303 ~~~~~~l~~~~~L~~L~l~~~~~L~~L~p~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 378 (394)
+.+|+.++.+.+|..|++.. +.+..+ |.|.. +..|++|++..|++...+.....+++++..|++..|++....
T Consensus 196 ~tlP~~lg~l~~L~~LyL~~-Nki~~l-Pef~g-cs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~P 268 (565)
T KOG0472|consen 196 ETLPPELGGLESLELLYLRR-NKIRFL-PEFPG-CSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVP 268 (565)
T ss_pred hcCChhhcchhhhHHHHhhh-cccccC-CCCCc-cHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCc
Confidence 89999999999999999998 788888 87777 899999999999987666666779999999999999887654
No 12
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=1e-18 Score=139.90 Aligned_cols=155 Identities=19% Similarity=0.236 Sum_probs=98.8
Q ss_pred ccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEE
Q 037494 169 ENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLN 247 (394)
Q Consensus 169 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~ 247 (394)
-.+.+...|-++.|+++.+|+.|..+.+|+.|++.+|.++++|..++.++.|+.|++. + .+..+|.++|.++.|+.|+
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLD 108 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhh
Confidence 4455566666666666666666666667777766666666666666666666666666 6 6666666666666666666
Q ss_pred eeCCCC--CCCCCCCCCCCCcCceeCccccC-CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCC
Q 037494 248 FDSITL--PAPPKNYSSSLKNLIFISALHPS-SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGS 324 (394)
Q Consensus 248 l~~~~~--~~~~p~~l~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 324 (394)
+. .+. ...+|..+-.++.|+.|.+.++. ...|.+++++++|+.|.+..+ ..-.+|..++.+..|+.|++.+ +
T Consensus 109 lt-ynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn---dll~lpkeig~lt~lrelhiqg-n 183 (264)
T KOG0617|consen 109 LT-YNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN---DLLSLPKEIGDLTRLRELHIQG-N 183 (264)
T ss_pred cc-ccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC---chhhCcHHHHHHHHHHHHhccc-c
Confidence 66 554 34455555555566666666665 556666666666666666665 3445566666666666666665 5
Q ss_pred CCCcc
Q 037494 325 KLSRM 329 (394)
Q Consensus 325 ~L~~L 329 (394)
.|..+
T Consensus 184 rl~vl 188 (264)
T KOG0617|consen 184 RLTVL 188 (264)
T ss_pred eeeec
Confidence 55555
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=1.3e-18 Score=139.33 Aligned_cols=165 Identities=18% Similarity=0.226 Sum_probs=107.8
Q ss_pred hhhccCCCCCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccc
Q 037494 136 FISLEQSDMYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLI 214 (394)
Q Consensus 136 ~~~~~~~~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l 214 (394)
+++....++++..|.++.+... .+ |.+ ..+++|++|++.+|+++++|.+++.++.||.|++.-|++..+|.++
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~-----~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgf 98 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLT-----VVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGF 98 (264)
T ss_pred hcccccchhhhhhhhcccCcee-----ecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCcccc
Confidence 3344455566666666666554 22 445 6677777777777777777777777777777777667777777777
Q ss_pred cCCCCCcEEEcc-cCCc--cccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccC-CCcchhcCCCCCCC
Q 037494 215 CTLLNLETLEMP-AGYI--DHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPS-SCTPDILSRLPTVQ 290 (394)
Q Consensus 215 ~~l~~L~~L~l~-~~~l--~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~ 290 (394)
|.++.|++||+. + ++ ..+|..+..|+.|+.|.++ ++....+|+.+|++++||.|.+.++. ...|.+++.++.|+
T Consensus 99 gs~p~levldltyn-nl~e~~lpgnff~m~tlralyl~-dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lr 176 (264)
T KOG0617|consen 99 GSFPALEVLDLTYN-NLNENSLPGNFFYMTTLRALYLG-DNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLR 176 (264)
T ss_pred CCCchhhhhhcccc-ccccccCCcchhHHHHHHHHHhc-CCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHH
Confidence 777777777776 4 33 3466666667777777777 66666667777777777777776666 66667777777777
Q ss_pred eEEEeecCCccccchhhhhcC
Q 037494 291 TLRISGDLSHYHSGVSKSLCE 311 (394)
Q Consensus 291 ~L~l~~~~~~~~~~~~~~l~~ 311 (394)
+|+|.++ -...+|..++.
T Consensus 177 elhiqgn---rl~vlppel~~ 194 (264)
T KOG0617|consen 177 ELHIQGN---RLTVLPPELAN 194 (264)
T ss_pred HHhcccc---eeeecChhhhh
Confidence 7777666 34445554443
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.58 E-value=1.4e-16 Score=156.68 Aligned_cols=239 Identities=18% Similarity=0.220 Sum_probs=154.7
Q ss_pred ceEEEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEec
Q 037494 123 TVKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQL 202 (394)
Q Consensus 123 ~~r~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l 202 (394)
..++|....+.........--.++..+.+..+... .+|++...+.+|+.++...|.+..+|..+...+.|++|..
T Consensus 220 ~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-----~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~ 294 (1081)
T KOG0618|consen 220 SLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-----NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSA 294 (1081)
T ss_pred chheeeeccCcceeeccccccccceeeecchhhhh-----cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHh
Confidence 44555554333332222244556777777776665 4566668888888888888888888888888888888888
Q ss_pred CCCCCccccccccCCCCCcEEEcc-cCCccccchhhcc-Cc-cCcEEEeeCCCCCCCCCCCC-CCCCcCceeCccccC--
Q 037494 203 NIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWM-MQ-KLMHLNFDSITLPAPPKNYS-SSLKNLIFISALHPS-- 276 (394)
Q Consensus 203 ~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~-l~-~L~~L~l~~~~~~~~~p~~l-~~l~~L~~L~~~~~~-- 276 (394)
..|.++.+|+....+..|++|+|. + .+..+|+.+.. +. +|+.|+.+ .+.+...|..= ..+..|+.|.+.++.
T Consensus 295 ~~nel~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s-~n~l~~lp~~~e~~~~~Lq~LylanN~Lt 372 (1081)
T KOG0618|consen 295 AYNELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVS-SNKLSTLPSYEENNHAALQELYLANNHLT 372 (1081)
T ss_pred hhhhhhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhh-hccccccccccchhhHHHHHHHHhcCccc
Confidence 888888888888888888888888 7 88888874332 22 24555555 44444444211 134456666666665
Q ss_pred CCcchhcCCCCCCCeEEEeecCCccccchh-hhhcCCCCCcEEEecCC----------------------CCCCccCCCC
Q 037494 277 SCTPDILSRLPTVQTLRISGDLSHYHSGVS-KSLCELHKLECLKLVNG----------------------SKLSRMVLSE 333 (394)
Q Consensus 277 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~----------------------~~L~~L~p~~ 333 (394)
....+-+..+++||.|++++|. ...+| ..+.++..|+.|+|+|+ +++..+ |.+
T Consensus 373 d~c~p~l~~~~hLKVLhLsyNr---L~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~f-Pe~ 448 (1081)
T KOG0618|consen 373 DSCFPVLVNFKHLKVLHLSYNR---LNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSF-PEL 448 (1081)
T ss_pred ccchhhhccccceeeeeecccc---cccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeec-hhh
Confidence 4455566666777777777763 33344 34556666666666661 333333 544
Q ss_pred CCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEeccc
Q 037494 334 YQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNS 373 (394)
Q Consensus 334 ~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~ 373 (394)
.. ++.|+.+|++.|+++...++..-.-|+|++|++++|.
T Consensus 449 ~~-l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 449 AQ-LPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hh-cCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 45 6778888888887766555554444778888887775
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.57 E-value=6.4e-15 Score=149.09 Aligned_cols=180 Identities=18% Similarity=0.232 Sum_probs=90.8
Q ss_pred eeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCC
Q 037494 174 LRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSIT 252 (394)
Q Consensus 174 L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~ 252 (394)
|+.|++++|.+..+|..+. .+|++|++++|.+..+|..+. .+|++|+++ | .+..+|..+. ++|+.|+++ +|
T Consensus 243 L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~Ls-~N 314 (754)
T PRK15370 243 IQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAHLP--SGITHLNVQ-SN 314 (754)
T ss_pred ccEEECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCcccch--hhHHHHHhc-CC
Confidence 4444444444444443332 234444444444444443332 244444444 4 4444443221 234444444 44
Q ss_pred CCCCCCCCCCCCCcCceeCccccC-CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC
Q 037494 253 LPAPPKNYSSSLKNLIFISALHPS-SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL 331 (394)
Q Consensus 253 ~~~~~p~~l~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p 331 (394)
.+..+|..+ .++|+.|.+.+|. ...+..+. ++|+.|++++|. ...+|..+ .+.|+.|+|++ ++|..+ |
T Consensus 315 ~Lt~LP~~l--~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~---L~~LP~~l--p~~L~~LdLs~-N~Lt~L-P 383 (754)
T PRK15370 315 SLTALPETL--PPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQ---ITVLPETL--PPTITTLDVSR-NALTNL-P 383 (754)
T ss_pred ccccCCccc--cccceeccccCCccccCChhhc--CcccEEECCCCC---CCcCChhh--cCCcCEEECCC-CcCCCC-C
Confidence 444444322 1456666665555 33343332 467777777663 33445444 24677777776 556666 5
Q ss_pred -CCCCCCCCceEEEEecccCCCCCc---ccccCCCCCCeEEEeccccc
Q 037494 332 -SEYQFPPSLIQLSLSNTELMEDPM---PMLERLPRLQVMKLKRNSYF 375 (394)
Q Consensus 332 -~~~~~l~~L~~L~L~~~~l~~~~~---~~l~~l~~L~~L~l~~n~~~ 375 (394)
.+ ..+|+.|++++|++...+. ...+.++++..|++.+|.++
T Consensus 384 ~~l---~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 384 ENL---PAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HhH---HHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 44 2357777777777653221 12234577888888777753
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.54 E-value=1.8e-14 Score=145.87 Aligned_cols=221 Identities=18% Similarity=0.212 Sum_probs=162.8
Q ss_pred ceEEEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEec
Q 037494 123 TVKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQL 202 (394)
Q Consensus 123 ~~r~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l 202 (394)
+...+.+.......+|... .+.++.|.+.++... .++..+ .++|++|++++|.++.+|..+. .+|+.|++
T Consensus 179 ~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~Lt-----sLP~~l--~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI-PEQITTLILDNNELK-----SLPENL--QGNIKTLYANSNQLTSIPATLP--DTIQEMEL 248 (754)
T ss_pred CceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCC-----cCChhh--ccCCCEEECCCCccccCChhhh--ccccEEEC
Confidence 3456666644555555432 357889999888776 343221 2589999999999998887654 47999999
Q ss_pred CCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccC-CCcc
Q 037494 203 NIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPS-SCTP 280 (394)
Q Consensus 203 ~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~-~~~~ 280 (394)
++|.+..+|..+. .+|+.|+++ | .+..+|..+. ++|+.|+++ +|.+..+|..+. ++|+.|++.+|. ...+
T Consensus 249 s~N~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls-~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP 320 (754)
T PRK15370 249 SINRITELPERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSVY-DNSIRTLPAHLP--SGITHLNVQSNSLTALP 320 (754)
T ss_pred cCCccCcCChhHh--CCCCEEECcCC-ccCccccccC--CCCcEEECC-CCccccCcccch--hhHHHHHhcCCccccCC
Confidence 9999999988764 489999999 7 8888887654 589999999 988888886553 478888888877 4444
Q ss_pred hhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCccccc
Q 037494 281 DILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLE 359 (394)
Q Consensus 281 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~ 359 (394)
..+. ++|+.|.+.+|. ...+|..+. ++|+.|++++ +++..+ | .+ +++|+.|+|++|++...+ +.+.
T Consensus 321 ~~l~--~sL~~L~Ls~N~---Lt~LP~~l~--~sL~~L~Ls~-N~L~~L-P~~l---p~~L~~LdLs~N~Lt~LP-~~l~ 387 (754)
T PRK15370 321 ETLP--PGLKTLEAGENA---LTSLPASLP--PELQVLDVSK-NQITVL-PETL---PPTITTLDVSRNALTNLP-ENLP 387 (754)
T ss_pred cccc--ccceeccccCCc---cccCChhhc--CcccEEECCC-CCCCcC-Chhh---cCCcCEEECCCCcCCCCC-HhHH
Confidence 4333 689999999884 445666553 6899999998 678877 7 55 468999999999986433 2332
Q ss_pred CCCCCCeEEEecccccC
Q 037494 360 RLPRLQVMKLKRNSYFG 376 (394)
Q Consensus 360 ~l~~L~~L~l~~n~~~~ 376 (394)
++|+.|++++|.+..
T Consensus 388 --~sL~~LdLs~N~L~~ 402 (754)
T PRK15370 388 --AALQIMQASRNNLVR 402 (754)
T ss_pred --HHHHHHhhccCCccc
Confidence 368999998888764
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.52 E-value=3.7e-16 Score=153.87 Aligned_cols=216 Identities=21% Similarity=0.215 Sum_probs=141.7
Q ss_pred cCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEe
Q 037494 170 NFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNF 248 (394)
Q Consensus 170 ~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l 248 (394)
.-.+|++++++.+.++.+|+.++.+.+|+.++..+|.+..+|..+....+|+.|++. | .++.+|+...++++|++|++
T Consensus 239 ~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred ccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeee
Confidence 345666777777777777766777777777777777777777666667777777666 6 66777766666777777777
Q ss_pred eCCCCCCCCCCCCC-CCC-cCceeCccccCCCcchhc--CCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCC
Q 037494 249 DSITLPAPPKNYSS-SLK-NLIFISALHPSSCTPDIL--SRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGS 324 (394)
Q Consensus 249 ~~~~~~~~~p~~l~-~l~-~L~~L~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 324 (394)
. .+.+..+|+.+- .+. +|+.|+.+.+........ ..++.|+.|.+.+|. ..+...+.+.++++|+.|+|+. +
T Consensus 318 ~-~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~--Ltd~c~p~l~~~~hLKVLhLsy-N 393 (1081)
T KOG0618|consen 318 Q-SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNH--LTDSCFPVLVNFKHLKVLHLSY-N 393 (1081)
T ss_pred h-hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCc--ccccchhhhccccceeeeeecc-c
Confidence 7 666666665321 111 244444443331111111 224557788888887 6677677888999999999998 7
Q ss_pred CCCccCC--CCCCCCCCceEEEEecccCCCCC---------------------cccccCCCCCCeEEEecccccCceeEE
Q 037494 325 KLSRMVL--SEYQFPPSLIQLSLSNTELMEDP---------------------MPMLERLPRLQVMKLKRNSYFGRKLAC 381 (394)
Q Consensus 325 ~L~~L~p--~~~~~l~~L~~L~L~~~~l~~~~---------------------~~~l~~l~~L~~L~l~~n~~~~~~~~~ 381 (394)
.|..+ | .+.+ +..|++|+|++|+++..+ .|.+..++.|+.++++.|.++...+..
T Consensus 394 rL~~f-pas~~~k-le~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~ 471 (1081)
T KOG0618|consen 394 RLNSF-PASKLRK-LEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPE 471 (1081)
T ss_pred ccccC-CHHHHhc-hHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhh
Confidence 78888 7 6666 788888888888765322 245677888999999888876544332
Q ss_pred eCCCCCcCCcccC
Q 037494 382 VGSGGFPELQVLT 394 (394)
Q Consensus 382 ~~~~~fp~L~~L~ 394 (394)
. ..-|+|++|+
T Consensus 472 ~--~p~p~LkyLd 482 (1081)
T KOG0618|consen 472 A--LPSPNLKYLD 482 (1081)
T ss_pred h--CCCcccceee
Confidence 2 1115677664
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.49 E-value=2e-13 Score=137.65 Aligned_cols=221 Identities=18% Similarity=0.115 Sum_probs=131.7
Q ss_pred CCceEEEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCccccc--------
Q 037494 121 LATVKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLE-------- 192 (394)
Q Consensus 121 ~~~~r~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~-------- 192 (394)
+..++.|.+..+....+|. ..++|+.|.+.+|.... +|.. .++|+.|++++|.+..+|....
T Consensus 221 ~~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~Lts-----LP~l---p~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls 290 (788)
T PRK15387 221 PAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTS-----LPVL---PPGLLELSIFSNPLTHLPALPSGLCKLWIF 290 (788)
T ss_pred hcCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCc-----ccCc---ccccceeeccCCchhhhhhchhhcCEEECc
Confidence 3456788888666666654 35788888888886652 2221 2355555555555554443211
Q ss_pred ---------CcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCC
Q 037494 193 ---------NLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSS 262 (394)
Q Consensus 193 ---------~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~ 262 (394)
.+++|++|++++|.++.+|... .+|+.|+++ | .+..+|.. ..+|+.|+++ +|.+..+|...
T Consensus 291 ~N~Lt~LP~~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N-~L~~LP~l---p~~Lq~LdLS-~N~Ls~LP~lp- 361 (788)
T PRK15387 291 GNQLTSLPVLPPGLQELSVSDNQLASLPALP---SELCKLWAYNN-QLTSLPTL---PSGLQELSVS-DNQLASLPTLP- 361 (788)
T ss_pred CCccccccccccccceeECCCCccccCCCCc---ccccccccccC-cccccccc---ccccceEecC-CCccCCCCCCC-
Confidence 1234444455444444444311 234444444 4 44444421 1367777777 77766666532
Q ss_pred CCCcCceeCccccC-CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCCCCCCCCCCce
Q 037494 263 SLKNLIFISALHPS-SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLI 341 (394)
Q Consensus 263 ~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p~~~~~l~~L~ 341 (394)
.+|+.|.+.++. ..++.. ..+|+.|++++|. ...+|.. .++|+.|++++ +.+..+ |.+ +.+|+
T Consensus 362 --~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~---Lt~LP~l---~s~L~~LdLS~-N~LssI-P~l---~~~L~ 425 (788)
T PRK15387 362 --SELYKLWAYNNRLTSLPAL---PSGLKELIVSGNR---LTSLPVL---PSELKELMVSG-NRLTSL-PML---PSGLL 425 (788)
T ss_pred --cccceehhhccccccCccc---ccccceEEecCCc---ccCCCCc---ccCCCEEEccC-CcCCCC-Ccc---hhhhh
Confidence 345566666555 333321 2467888888874 3344432 35788888888 667777 621 34688
Q ss_pred EEEEecccCCCCCcccccCCCCCCeEEEecccccCc
Q 037494 342 QLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGR 377 (394)
Q Consensus 342 ~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 377 (394)
.|++++|+++. .+..++++++|+.|++++|.+++.
T Consensus 426 ~L~Ls~NqLt~-LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 426 SLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred hhhhccCcccc-cChHHhhccCCCeEECCCCCCCch
Confidence 89999999863 445688899999999999988764
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.40 E-value=3.2e-12 Score=129.08 Aligned_cols=214 Identities=18% Similarity=0.100 Sum_probs=123.6
Q ss_pred eEEEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecC
Q 037494 124 VKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLN 203 (394)
Q Consensus 124 ~r~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~ 203 (394)
-..|.+..+....+|... ..+++.|.+.++... .+|. ..++|++|++++|.++.+|.. ..+|+.|+++
T Consensus 203 ~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt-----~LP~---lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLT-----SLPA---LPPELRTLEVSGNQLTSLPVL---PPGLLELSIF 270 (788)
T ss_pred CcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCC-----CCCC---CCCCCcEEEecCCccCcccCc---ccccceeecc
Confidence 345566655555666542 247999999988776 3443 358899999999999988853 3577888888
Q ss_pred CCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccC-CCcch
Q 037494 204 IPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPS-SCTPD 281 (394)
Q Consensus 204 ~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~-~~~~~ 281 (394)
+|.+..+|.. ..+|+.|+++ | .+..+|.. +++|+.|+++ +|.+..+|... .+|+.|.+.+|. ..++.
T Consensus 271 ~N~L~~Lp~l---p~~L~~L~Ls~N-~Lt~LP~~---p~~L~~LdLS-~N~L~~Lp~lp---~~L~~L~Ls~N~L~~LP~ 339 (788)
T PRK15387 271 SNPLTHLPAL---PSGLCKLWIFGN-QLTSLPVL---PPGLQELSVS-DNQLASLPALP---SELCKLWAYNNQLTSLPT 339 (788)
T ss_pred CCchhhhhhc---hhhcCEEECcCC-cccccccc---ccccceeECC-CCccccCCCCc---ccccccccccCccccccc
Confidence 8888877753 2456677777 7 77777652 4667777777 77766655422 234444444443 22211
Q ss_pred hcCCCCCCCeEEEeecCCc-----------------cccchhhhhcCCCCCcEEEecCCCCCCccCCCCCCCCCCceEEE
Q 037494 282 ILSRLPTVQTLRISGDLSH-----------------YHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLIQLS 344 (394)
Q Consensus 282 ~l~~l~~L~~L~l~~~~~~-----------------~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p~~~~~l~~L~~L~ 344 (394)
+ ..+|+.|++++|.-. ....+|.. ..+|+.|++++ +.+..+ |.. +++|+.|+
T Consensus 340 -l--p~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~-N~Lt~L-P~l---~s~L~~Ld 408 (788)
T PRK15387 340 -L--PSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPAL---PSGLKELIVSG-NRLTSL-PVL---PSELKELM 408 (788)
T ss_pred -c--ccccceEecCCCccCCCCCCCcccceehhhccccccCccc---ccccceEEecC-CcccCC-CCc---ccCCCEEE
Confidence 1 124555555554300 11122221 13455555555 344444 411 34566666
Q ss_pred EecccCCCCCcccccCCCCCCeEEEeccccc
Q 037494 345 LSNTELMEDPMPMLERLPRLQVMKLKRNSYF 375 (394)
Q Consensus 345 L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~ 375 (394)
+++|++... |.+ ..+|+.|++++|.++
T Consensus 409 LS~N~LssI--P~l--~~~L~~L~Ls~NqLt 435 (788)
T PRK15387 409 VSGNRLTSL--PML--PSGLLSLSVYRNQLT 435 (788)
T ss_pred ccCCcCCCC--Ccc--hhhhhhhhhccCccc
Confidence 666665432 111 235666677666655
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.38 E-value=3.3e-14 Score=128.02 Aligned_cols=232 Identities=19% Similarity=0.136 Sum_probs=149.5
Q ss_pred CccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCC-cccccCcccccEEecCC-CCCcccccc-ccCCCCC
Q 037494 145 YLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQF-PPGLENLFLLKYLQLNI-PTLKCLPLL-ICTLLNL 220 (394)
Q Consensus 145 ~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~-~~l~~lp~~-l~~l~~L 220 (394)
....+.+..|.+. .+ +..|+.++.||.|||+.|.|+.+ |+++..+..|..|-+-+ |+|+.+|+. +++|..|
T Consensus 68 ~tveirLdqN~I~-----~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 68 ETVEIRLDQNQIS-----SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL 142 (498)
T ss_pred cceEEEeccCCcc-----cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence 3555667777775 34 45558999999999999998866 68888888887776666 789999865 6778888
Q ss_pred cEEEcc-cCCccccc-hhhccCccCcEEEeeCCCCCCCCCC-CCCCCCcCceeCccccC--------------CCcchhc
Q 037494 221 ETLEMP-AGYIDHSP-EGIWMMQKLMHLNFDSITLPAPPKN-YSSSLKNLIFISALHPS--------------SCTPDIL 283 (394)
Q Consensus 221 ~~L~l~-~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~~~~~~--------------~~~~~~l 283 (394)
+.|.+. + .+.-++ ..+..|++|..|.+. ++....++. ++..+.+++++.+..+. ...+.++
T Consensus 143 qrLllNan-~i~Cir~~al~dL~~l~lLsly-Dn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iet 220 (498)
T KOG4237|consen 143 QRLLLNAN-HINCIRQDALRDLPSLSLLSLY-DNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIET 220 (498)
T ss_pred HHHhcChh-hhcchhHHHHHHhhhcchhccc-chhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhc
Confidence 888888 7 666555 457788888888888 777666665 46677777777654433 0011111
Q ss_pred CCCCC----------------------CCeE---EEeecCCccccchh-hhhcCCCCCcEEEecCCCCCCccCC-CCCCC
Q 037494 284 SRLPT----------------------VQTL---RISGDLSHYHSGVS-KSLCELHKLECLKLVNGSKLSRMVL-SEYQF 336 (394)
Q Consensus 284 ~~l~~----------------------L~~L---~l~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~ 336 (394)
+.... ++.+ -.+.+. .....| ..|..+++|+.|++++ +.+..+.+ ||..
T Consensus 221 sgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~--~d~~cP~~cf~~L~~L~~lnlsn-N~i~~i~~~aFe~- 296 (498)
T KOG4237|consen 221 SGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDF--PDSICPAKCFKKLPNLRKLNLSN-NKITRIEDGAFEG- 296 (498)
T ss_pred ccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccC--cCCcChHHHHhhcccceEeccCC-Cccchhhhhhhcc-
Confidence 11100 0000 000000 111122 3466777888888877 66777655 7777
Q ss_pred CCCceEEEEecccCCCCCcccccCCCCCCeEEEecccccCceeEEeCCCCCcCCcc
Q 037494 337 PPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQV 392 (394)
Q Consensus 337 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~fp~L~~ 392 (394)
+..+++|.|..|++....-..+.++..|+.|+|++|.++-.. +++|..+.+
T Consensus 297 ~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~-----~~aF~~~~~ 347 (498)
T KOG4237|consen 297 AAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVA-----PGAFQTLFS 347 (498)
T ss_pred hhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEe-----cccccccce
Confidence 777777777777765544455677777777777777665433 445554443
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.34 E-value=2.1e-13 Score=127.00 Aligned_cols=230 Identities=17% Similarity=0.125 Sum_probs=111.0
Q ss_pred CCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCC-------CcccccCcccccEEecCCCCCc-ccccccc
Q 037494 144 MYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQ-------FPPGLENLFLLKYLQLNIPTLK-CLPLLIC 215 (394)
Q Consensus 144 ~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~-------lp~~i~~l~~L~~L~l~~~~l~-~lp~~l~ 215 (394)
.+++.+.+.++.........+...+...+.++.++++++.+.. ++..+..+.+|+.|++++|.+. ..+..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 3355555555554321112233333555556666665555432 1233444556666666665554 2222332
Q ss_pred CCC---CCcEEEcc-cCCcc-----ccchhhccC-ccCcEEEeeCCCCCC-----CCCCCCCCCCcCceeCccccC-C--
Q 037494 216 TLL---NLETLEMP-AGYID-----HSPEGIWMM-QKLMHLNFDSITLPA-----PPKNYSSSLKNLIFISALHPS-S-- 277 (394)
Q Consensus 216 ~l~---~L~~L~l~-~~~l~-----~lp~~i~~l-~~L~~L~l~~~~~~~-----~~p~~l~~l~~L~~L~~~~~~-~-- 277 (394)
.+. +|++|+++ | .+. .+...+..+ ++|+.|+++ +|... .++..+..+++|++|++..+. .
T Consensus 103 ~l~~~~~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~-~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 180 (319)
T cd00116 103 SLLRSSSLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLG-RNRLEGASCEALAKALRANRDLKELNLANNGIGDA 180 (319)
T ss_pred HHhccCcccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcC-CCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH
Confidence 232 26666666 5 333 122234444 566666666 55533 122223444556666665554 1
Q ss_pred ---CcchhcCCCCCCCeEEEeecCC--ccccchhhhhcCCCCCcEEEecCCCCCCccC----C-C-CCCCCCCceEEEEe
Q 037494 278 ---CTPDILSRLPTVQTLRISGDLS--HYHSGVSKSLCELHKLECLKLVNGSKLSRMV----L-S-EYQFPPSLIQLSLS 346 (394)
Q Consensus 278 ---~~~~~l~~l~~L~~L~l~~~~~--~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~----p-~-~~~~l~~L~~L~L~ 346 (394)
..+..+..+++|+.|++++|.- .....+...+..+++|+.|+++++ .+.... . . ... .+.|++|+++
T Consensus 181 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~-~~~L~~L~l~ 258 (319)
T cd00116 181 GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSP-NISLLTLSLS 258 (319)
T ss_pred HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhcc-CCCceEEEcc
Confidence 1223344455667777766641 111233445555666777777662 233210 0 0 011 3567777777
Q ss_pred cccCCCCCc----ccccCCCCCCeEEEecccccCc
Q 037494 347 NTELMEDPM----PMLERLPRLQVMKLKRNSYFGR 377 (394)
Q Consensus 347 ~~~l~~~~~----~~l~~l~~L~~L~l~~n~~~~~ 377 (394)
+|.++.... ..+..+++|+++++++|.+...
T Consensus 259 ~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 259 CNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred CCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 776642221 2234456677777766666543
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.33 E-value=6.2e-13 Score=123.77 Aligned_cols=226 Identities=18% Similarity=0.119 Sum_probs=155.8
Q ss_pred CCCCCccEEEEecCCCcc-chh-cchhHHhccCCceeEEEcCCCCCC-CCcccccCccc---ccEEecCCCCCc-----c
Q 037494 141 QSDMYLQSFLNHSSESDH-LAL-IDCENFCENFKYLRVLNWGSAVLD-QFPPGLENLFL---LKYLQLNIPTLK-----C 209 (394)
Q Consensus 141 ~~~~~lr~L~l~~~~~~~-~~~-~~l~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~---L~~L~l~~~~l~-----~ 209 (394)
...+.++.+.+.++.... ... ..+...+..+++|+.|++++|.+. ..+..+..+.+ |++|++++|.+. .
T Consensus 48 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~ 127 (319)
T cd00116 48 RPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRL 127 (319)
T ss_pred hhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHH
Confidence 456678888887766541 011 122445588999999999999986 44455555555 999999999876 2
Q ss_pred ccccccCC-CCCcEEEcc-cCCcc-----ccchhhccCccCcEEEeeCCCCCC-----CCCCCCCCCCcCceeCccccC-
Q 037494 210 LPLLICTL-LNLETLEMP-AGYID-----HSPEGIWMMQKLMHLNFDSITLPA-----PPKNYSSSLKNLIFISALHPS- 276 (394)
Q Consensus 210 lp~~l~~l-~~L~~L~l~-~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~-----~~p~~l~~l~~L~~L~~~~~~- 276 (394)
+...+..+ ++|+.|+++ | .+. .++..+..+++|++|+++ +|.+. .++..+..+++|+.|++.+|.
T Consensus 128 l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~L~~L~l~-~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 205 (319)
T cd00116 128 LAKGLKDLPPALEKLVLGRN-RLEGASCEALAKALRANRDLKELNLA-NNGIGDAGIRALAEGLKANCNLEVLDLNNNGL 205 (319)
T ss_pred HHHHHHhCCCCceEEEcCCC-cCCchHHHHHHHHHHhCCCcCEEECc-CCCCchHHHHHHHHHHHhCCCCCEEeccCCcc
Confidence 33455667 899999999 8 655 345566778899999999 88744 233334556799999998886
Q ss_pred -----CCcchhcCCCCCCCeEEEeecCCccccchhhhhc-----CCCCCcEEEecCCCCCC-----ccCC-CCCCCCCCc
Q 037494 277 -----SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLC-----ELHKLECLKLVNGSKLS-----RMVL-SEYQFPPSL 340 (394)
Q Consensus 277 -----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~L~-----~L~p-~~~~~l~~L 340 (394)
......+..+++|+.|++++|. ..+.....+. ..+.|+.|++++| .+. .+ + .+.. +++|
T Consensus 206 ~~~~~~~l~~~~~~~~~L~~L~ls~n~--l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l-~~~~~~-~~~L 280 (319)
T cd00116 206 TDEGASALAETLASLKSLEVLNLGDNN--LTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDL-AEVLAE-KESL 280 (319)
T ss_pred ChHHHHHHHHHhcccCCCCEEecCCCc--CchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHH-HHHHhc-CCCc
Confidence 2234557788999999999987 3332222221 2479999999983 443 22 2 4445 6899
Q ss_pred eEEEEecccCCCCCccc----ccCC-CCCCeEEEeccc
Q 037494 341 IQLSLSNTELMEDPMPM----LERL-PRLQVMKLKRNS 373 (394)
Q Consensus 341 ~~L~L~~~~l~~~~~~~----l~~l-~~L~~L~l~~n~ 373 (394)
+.+++++|.+....... +... +.|+.|++.+|.
T Consensus 281 ~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 281 LELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred cEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 99999999987654332 3334 689999986654
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.32 E-value=8.2e-14 Score=125.55 Aligned_cols=203 Identities=16% Similarity=0.139 Sum_probs=143.2
Q ss_pred ceeEEEcCCCCCCCCc-ccccCcccccEEecCCCCCccc-cccccCCCCCcEEEcc-cCCccccch-hhccCccCcEEEe
Q 037494 173 YLRVLNWGSAVLDQFP-PGLENLFLLKYLQLNIPTLKCL-PLLICTLLNLETLEMP-AGYIDHSPE-GIWMMQKLMHLNF 248 (394)
Q Consensus 173 ~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~-~~~l~~lp~-~i~~l~~L~~L~l 248 (394)
.-..++|+.|+|+.+| .+|+.+++||.|+|++|.|+.+ |..+..+.+|..|-+. ++.|..+|. .++.|.+|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 3467889999999987 7888999999999999999875 5667788888887776 559999996 4788999999988
Q ss_pred eCCCCCCCCC-CCCCCCCcCceeCccccC-CCcch-hcCCCCCCCeEEEeecC---Cc-------cccchhhhhcCCCCC
Q 037494 249 DSITLPAPPK-NYSSSLKNLIFISALHPS-SCTPD-ILSRLPTVQTLRISGDL---SH-------YHSGVSKSLCELHKL 315 (394)
Q Consensus 249 ~~~~~~~~~p-~~l~~l~~L~~L~~~~~~-~~~~~-~l~~l~~L~~L~l~~~~---~~-------~~~~~~~~l~~~~~L 315 (394)
. -|.+.-++ ..+..|++|..|.++++. ..... .+..+..++.+.+..++ .. .....+..++.+...
T Consensus 148 N-an~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 148 N-ANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred C-hhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 8 77755544 447888899899988887 33333 56677777777766654 00 111112222222222
Q ss_pred cEEEecCC-----------CCCCcc-------------CC--CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEE
Q 037494 316 ECLKLVNG-----------SKLSRM-------------VL--SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKL 369 (394)
Q Consensus 316 ~~L~l~~~-----------~~L~~L-------------~p--~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l 369 (394)
....+... ..++.+ .| .|+. +++|+.|+|++|+++.....++.++..++.|.|
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~-L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKK-LPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhh-cccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 11111110 011111 15 5777 999999999999998888889999999999999
Q ss_pred ecccccCc
Q 037494 370 KRNSYFGR 377 (394)
Q Consensus 370 ~~n~~~~~ 377 (394)
..|++...
T Consensus 306 ~~N~l~~v 313 (498)
T KOG4237|consen 306 TRNKLEFV 313 (498)
T ss_pred CcchHHHH
Confidence 88886543
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.27 E-value=1.8e-12 Score=133.38 Aligned_cols=200 Identities=21% Similarity=0.197 Sum_probs=144.5
Q ss_pred hhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCC--CCCCc-ccccCcccccEEecCCC-CCccccc
Q 037494 137 ISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAV--LDQFP-PGLENLFLLKYLQLNIP-TLKCLPL 212 (394)
Q Consensus 137 ~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~--~~~lp-~~i~~l~~L~~L~l~~~-~l~~lp~ 212 (394)
.+.......+|...+.++.... ++.- ...+.|++|-+.++. +..++ +.+..++.|++||+++| .+.++|+
T Consensus 516 ~~~~~~~~~~rr~s~~~~~~~~-----~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~ 589 (889)
T KOG4658|consen 516 IPQVKSWNSVRRMSLMNNKIEH-----IAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS 589 (889)
T ss_pred cccccchhheeEEEEeccchhh-----ccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh
Confidence 4555667788988888887752 2222 455679999999886 55555 44778999999999987 6889999
Q ss_pred cccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCC-CCCCCCCCCCCCcCceeCccccC----CCcchhcCCC
Q 037494 213 LICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITL-PAPPKNYSSSLKNLIFISALHPS----SCTPDILSRL 286 (394)
Q Consensus 213 ~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~-~~~~p~~l~~l~~L~~L~~~~~~----~~~~~~l~~l 286 (394)
.++.|.+|++|+++ + .+..+|.++++|.+|.+|++. .+. ...+|.....|++|++|.+.... .....++..+
T Consensus 590 ~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~-~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~L 667 (889)
T KOG4658|consen 590 SIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLE-VTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENL 667 (889)
T ss_pred HHhhhhhhhcccccCC-CccccchHHHHHHhhheeccc-cccccccccchhhhcccccEEEeeccccccchhhHHhhhcc
Confidence 99999999999999 8 999999999999999999999 776 44444445569999999987765 4556677888
Q ss_pred CCCCeEEEeecCCccccchhhhhcCCCCCc----EEEecCCCCCCccCC-CCCCCCCCceEEEEecccCC
Q 037494 287 PTVQTLRISGDLSHYHSGVSKSLCELHKLE----CLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELM 351 (394)
Q Consensus 287 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~----~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~ 351 (394)
.+|+.+.+.... . .+...+..+..|. .+.+.+ .....+ + .+.. +.+|+.|.+.+|.+.
T Consensus 668 e~L~~ls~~~~s---~-~~~e~l~~~~~L~~~~~~l~~~~-~~~~~~-~~~~~~-l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 668 EHLENLSITISS---V-LLLEDLLGMTRLRSLLQSLSIEG-CSKRTL-ISSLGS-LGNLEELSILDCGIS 730 (889)
T ss_pred cchhhheeecch---h-HhHhhhhhhHHHHHHhHhhhhcc-ccccee-eccccc-ccCcceEEEEcCCCc
Confidence 888888886553 2 2222233333333 233222 223333 3 5555 778888888888764
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.27 E-value=2.4e-13 Score=127.78 Aligned_cols=171 Identities=22% Similarity=0.228 Sum_probs=140.4
Q ss_pred ccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEE
Q 037494 169 ENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLN 247 (394)
Q Consensus 169 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~ 247 (394)
+.+-.|..+.+..|.+..+|.+++++..|++++|+.|.+..+|..++.|+ |+.|-++ | ++..+|..++.+..|.+|+
T Consensus 95 ~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld 172 (722)
T KOG0532|consen 95 CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLD 172 (722)
T ss_pred HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC-ccccCCcccccchhHHHhh
Confidence 66777888888888888889999999999999999999999998888877 8888888 6 8889999899888999999
Q ss_pred eeCCCCCCCCCCCCCCCCcCceeCccccC-CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCC
Q 037494 248 FDSITLPAPPKNYSSSLKNLIFISALHPS-SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKL 326 (394)
Q Consensus 248 l~~~~~~~~~p~~l~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L 326 (394)
.+ .|.+..+|..++.+.+|+.|.+..+. ...|++++.|+ |..|++++| ....+|-.|..|++|++|-|.++| |
T Consensus 173 ~s-~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScN---kis~iPv~fr~m~~Lq~l~LenNP-L 246 (722)
T KOG0532|consen 173 VS-KNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCN---KISYLPVDFRKMRHLQVLQLENNP-L 246 (722)
T ss_pred hh-hhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccC---ceeecchhhhhhhhheeeeeccCC-C
Confidence 98 88888889889999999999888887 88888888775 788899888 567788888999999999998743 5
Q ss_pred CccCC-CC---CCCCCCceEEEEeccc
Q 037494 327 SRMVL-SE---YQFPPSLIQLSLSNTE 349 (394)
Q Consensus 327 ~~L~p-~~---~~~l~~L~~L~L~~~~ 349 (394)
+.= | .+ +. ..=.++|++..|+
T Consensus 247 qSP-PAqIC~kGk-VHIFKyL~~qA~q 271 (722)
T KOG0532|consen 247 QSP-PAQICEKGK-VHIFKYLSTQACQ 271 (722)
T ss_pred CCC-hHHHHhccc-eeeeeeecchhcc
Confidence 543 3 32 22 4446778888884
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.25 E-value=2.6e-13 Score=127.63 Aligned_cols=191 Identities=18% Similarity=0.255 Sum_probs=158.7
Q ss_pred cCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEe
Q 037494 170 NFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNF 248 (394)
Q Consensus 170 ~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l 248 (394)
.+..-...+++.|.+..+|..++.+..|..+.+..|.+..+|+.++++..|.+|+++ | ++..+|..+..++ |+.|-+
T Consensus 73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred cccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEE
Confidence 344445678889999999988999999999999999999999999999999999999 8 8999998888876 899999
Q ss_pred eCCCCCCCCCCCCCCCCcCceeCccccC-CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCC
Q 037494 249 DSITLPAPPKNYSSSLKNLIFISALHPS-SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLS 327 (394)
Q Consensus 249 ~~~~~~~~~p~~l~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~ 327 (394)
+ +|.+..+|+.++.+..|..|+.+.|. ...+..++.+.+|+.|.+..| ....+|+.++.+ .|.+|++++ +++.
T Consensus 151 s-NNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn---~l~~lp~El~~L-pLi~lDfSc-Nkis 224 (722)
T KOG0532|consen 151 S-NNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN---HLEDLPEELCSL-PLIRLDFSC-NKIS 224 (722)
T ss_pred e-cCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh---hhhhCCHHHhCC-ceeeeeccc-Ccee
Confidence 9 88899999999988888888888888 788888999999999999888 677788887754 677888887 8888
Q ss_pred ccCC-CCCCCCCCceEEEEecccCCCCCcccc--cCCCCCCeEEEe
Q 037494 328 RMVL-SEYQFPPSLIQLSLSNTELMEDPMPML--ERLPRLQVMKLK 370 (394)
Q Consensus 328 ~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l--~~l~~L~~L~l~ 370 (394)
.+ | .|.. ++.|++|-|.+|.+...+.+.. |...-.++|+..
T Consensus 225 ~i-Pv~fr~-m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~q 268 (722)
T KOG0532|consen 225 YL-PVDFRK-MRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQ 268 (722)
T ss_pred ec-chhhhh-hhhheeeeeccCCCCCChHHHHhccceeeeeeecch
Confidence 88 9 8888 9999999999999865444432 445667777774
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.17 E-value=4e-11 Score=115.12 Aligned_cols=175 Identities=23% Similarity=0.234 Sum_probs=141.5
Q ss_pred ccCCceeEEEcCCCCCCCCcccccCcc-cccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEE
Q 037494 169 ENFKYLRVLNWGSAVLDQFPPGLENLF-LLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHL 246 (394)
Q Consensus 169 ~~l~~L~~L~l~~~~~~~lp~~i~~l~-~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L 246 (394)
..++.++.|++.++.+.++++.++.+. +|+.|++++|.+..+|..++.+++|+.|+++ | .+..+|...+.+++|+.|
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred hcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhhe
Confidence 566889999999999999998888885 9999999999999998888999999999999 8 999999877789999999
Q ss_pred EeeCCCCCCCCCCCCCCCCcCceeCccccC-CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCC
Q 037494 247 NFDSITLPAPPKNYSSSLKNLIFISALHPS-SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSK 325 (394)
Q Consensus 247 ~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 325 (394)
+++ ++....+|..++....|++|.+..+. ...+..+.++.++..+.+.++. ...++..++.+++++.|++++ ..
T Consensus 192 ~ls-~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~---~~~~~~~~~~l~~l~~L~~s~-n~ 266 (394)
T COG4886 192 DLS-GNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK---LEDLPESIGNLSNLETLDLSN-NQ 266 (394)
T ss_pred ecc-CCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce---eeeccchhccccccceecccc-cc
Confidence 999 99889998877777779999888885 6667777777888777766663 333356677777788888877 55
Q ss_pred CCccCCCCCCCCCCceEEEEecccCC
Q 037494 326 LSRMVLSEYQFPPSLIQLSLSNTELM 351 (394)
Q Consensus 326 L~~L~p~~~~~l~~L~~L~L~~~~l~ 351 (394)
+..+ +.++. +.+|+.|+++++.+.
T Consensus 267 i~~i-~~~~~-~~~l~~L~~s~n~~~ 290 (394)
T COG4886 267 ISSI-SSLGS-LTNLRELDLSGNSLS 290 (394)
T ss_pred cccc-ccccc-cCccCEEeccCcccc
Confidence 6655 44555 778888888887654
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.14 E-value=3.8e-11 Score=115.28 Aligned_cols=191 Identities=25% Similarity=0.256 Sum_probs=159.7
Q ss_pred EEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCC-CCcEEEcc-cCCccccchhhccCccCcEEEeeCCCC
Q 037494 176 VLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLL-NLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITL 253 (394)
Q Consensus 176 ~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~-~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~ 253 (394)
.++...+.+......+..++.++.|++.++.+.++|+..+.+. +|+.|+++ + .+..+|..++.+++|+.|+++ +|.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~-~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLS-FND 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhccccccccc-chhhhhhhhhccccccccccC-Cch
Confidence 5778888775555567777899999999999999998888885 99999999 8 999998889999999999999 999
Q ss_pred CCCCCCCCCCCCcCceeCccccC-CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-
Q 037494 254 PAPPKNYSSSLKNLIFISALHPS-SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL- 331 (394)
Q Consensus 254 ~~~~p~~l~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p- 331 (394)
+..+|...+.+++|+.|.+.++. ...+..++....|+.|.+.++. ....+..+..+..+..+.+.+ ..+..+ |
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~---~~~~~~~~~~~~~l~~l~l~~-n~~~~~-~~ 249 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS---IIELLSSLSNLKNLSGLELSN-NKLEDL-PE 249 (394)
T ss_pred hhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc---ceecchhhhhcccccccccCC-ceeeec-cc
Confidence 99999888799999999999998 6666666677779999999883 455666777888888888665 556665 6
Q ss_pred CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccccC
Q 037494 332 SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFG 376 (394)
Q Consensus 332 ~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 376 (394)
.++. +++++.|++++|++... +.++.+.+|+.|++++|.+..
T Consensus 250 ~~~~-l~~l~~L~~s~n~i~~i--~~~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 250 SIGN-LSNLETLDLSNNQISSI--SSLGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred hhcc-ccccceecccccccccc--ccccccCccCEEeccCccccc
Confidence 7777 88999999999998543 448899999999998876653
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=6.1e-11 Score=108.60 Aligned_cols=83 Identities=16% Similarity=0.118 Sum_probs=39.1
Q ss_pred ccCCceeEEEcCCCCCCCCc--ccccCcccccEEecCCCCCccc---cccccCCCCCcEEEcc-cCCccccch--hhccC
Q 037494 169 ENFKYLRVLNWGSAVLDQFP--PGLENLFLLKYLQLNIPTLKCL---PLLICTLLNLETLEMP-AGYIDHSPE--GIWMM 240 (394)
Q Consensus 169 ~~l~~L~~L~l~~~~~~~lp--~~i~~l~~L~~L~l~~~~l~~l---p~~l~~l~~L~~L~l~-~~~l~~lp~--~i~~l 240 (394)
++++.||...+.++.....+ +....+++++.|++++|-+..+ -.-+..|++|+.|+++ | .+..... ....+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-cccCCccccchhhh
Confidence 44555666666655554333 2444555666666665543321 1223345555555555 4 3321111 11234
Q ss_pred ccCcEEEeeCCCC
Q 037494 241 QKLMHLNFDSITL 253 (394)
Q Consensus 241 ~~L~~L~l~~~~~ 253 (394)
+.|+.|.++ .|.
T Consensus 197 ~~lK~L~l~-~CG 208 (505)
T KOG3207|consen 197 SHLKQLVLN-SCG 208 (505)
T ss_pred hhhheEEec-cCC
Confidence 455555555 544
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.93 E-value=4.4e-10 Score=93.70 Aligned_cols=82 Identities=24% Similarity=0.216 Sum_probs=19.0
Q ss_pred ccCCceeEEEcCCCCCCCCccccc-CcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhc-cCccCcE
Q 037494 169 ENFKYLRVLNWGSAVLDQFPPGLE-NLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIW-MMQKLMH 245 (394)
Q Consensus 169 ~~l~~L~~L~l~~~~~~~lp~~i~-~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~-~l~~L~~ 245 (394)
.+...++.|+++++.++.+. .++ .+.+|+.|++++|.|+.++ .+..+++|++|+++ | .+..++..+. .+++|++
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccchHHhCCcCCE
Confidence 33444566666666665543 233 4556666666666666554 45556666666666 5 6665544432 4566666
Q ss_pred EEeeCCCCC
Q 037494 246 LNFDSITLP 254 (394)
Q Consensus 246 L~l~~~~~~ 254 (394)
|+++ +|.+
T Consensus 93 L~L~-~N~I 100 (175)
T PF14580_consen 93 LYLS-NNKI 100 (175)
T ss_dssp EE-T-TS--
T ss_pred EECc-CCcC
Confidence 6666 5543
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.92 E-value=4.7e-10 Score=93.56 Aligned_cols=132 Identities=21% Similarity=0.235 Sum_probs=53.1
Q ss_pred hhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccc-c
Q 037494 137 ISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLI-C 215 (394)
Q Consensus 137 ~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l-~ 215 (394)
.+...+..++|.|.+.++.+. .+..+-..+.+|++|++++|.++++. .+..+++|+.|++++|.|+.+++.+ .
T Consensus 12 ~~~~~n~~~~~~L~L~~n~I~-----~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~ 85 (175)
T PF14580_consen 12 IAQYNNPVKLRELNLRGNQIS-----TIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDK 85 (175)
T ss_dssp -----------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHH
T ss_pred ccccccccccccccccccccc-----cccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHH
Confidence 333345567888888888886 34444125788999999999998875 4778899999999999999887655 3
Q ss_pred CCCCCcEEEcc-cCCccccc--hhhccCccCcEEEeeCCCCCCCCCCC----CCCCCcCceeCccccC
Q 037494 216 TLLNLETLEMP-AGYIDHSP--EGIWMMQKLMHLNFDSITLPAPPKNY----SSSLKNLIFISALHPS 276 (394)
Q Consensus 216 ~l~~L~~L~l~-~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~~----l~~l~~L~~L~~~~~~ 276 (394)
.+++|++|+++ | .+..+- ..+..+++|+.|++. +|+....+.- +..+++|+.|+...+.
T Consensus 86 ~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~-~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 86 NLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLE-GNPVCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp H-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-T-T-GGGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred hCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeecc-CCcccchhhHHHHHHHHcChhheeCCEEcc
Confidence 58999999999 7 776654 357788999999999 8886555432 5667788888776655
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.70 E-value=2.3e-09 Score=93.97 Aligned_cols=99 Identities=17% Similarity=0.110 Sum_probs=44.6
Q ss_pred cccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccc
Q 037494 196 LLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALH 274 (394)
Q Consensus 196 ~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~ 274 (394)
.|+.+|+++|.|+.+.+++.-++.++.|+++ | .+..+.. +..+++|++|+++ +|.+.++-..-.+|.|.++|.+..
T Consensus 285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS-~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTVQN-LAELPQLQLLDLS-GNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhhccccccchhhhhhhhhhccceeEEecccc-ceeeehh-hhhcccceEeecc-cchhHhhhhhHhhhcCEeeeehhh
Confidence 3444555555555554444444555555555 4 4444322 4444555555555 444333322222344444444444
Q ss_pred cCCCcchhcCCCCCCCeEEEeec
Q 037494 275 PSSCTPDILSRLPTVQTLRISGD 297 (394)
Q Consensus 275 ~~~~~~~~l~~l~~L~~L~l~~~ 297 (394)
+......+++++-+|..|++++|
T Consensus 362 N~iE~LSGL~KLYSLvnLDl~~N 384 (490)
T KOG1259|consen 362 NKIETLSGLRKLYSLVNLDLSSN 384 (490)
T ss_pred hhHhhhhhhHhhhhheecccccc
Confidence 43333344444444444444444
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=8.1e-09 Score=94.91 Aligned_cols=174 Identities=18% Similarity=0.101 Sum_probs=115.3
Q ss_pred CCceEEEEEEeCCcchhhc---cCCCCCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCCccc--ccCc
Q 037494 121 LATVKRCFILEDLIEFISL---EQSDMYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQFPPG--LENL 194 (394)
Q Consensus 121 ~~~~r~L~l~~~~~~~~~~---~~~~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~lp~~--i~~l 194 (394)
.+++|.+++........+. ...++++|.|+++.+-.. .|.. -.+...+++|+.|+++.|.+....++ -..+
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~---nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFH---NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHH---hHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 4467777777444444442 377888999988887665 3333 55668889999999998886633322 2357
Q ss_pred ccccEEecCCCCCc--cccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCC--CCCCCCCcCce
Q 037494 195 FLLKYLQLNIPTLK--CLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPK--NYSSSLKNLIF 269 (394)
Q Consensus 195 ~~L~~L~l~~~~l~--~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p--~~l~~l~~L~~ 269 (394)
.+|+.|.+++|.+. ++-..+..+++|+.|++. |..+..-.....-+..|+.|+++ +|....++ ..++.++.|+.
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs-~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLS-NNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhcccc-CCcccccccccccccccchhh
Confidence 78888999888776 333344567888888888 63332222233456778888888 88877776 34778888888
Q ss_pred eCccccC---CCcch-----hcCCCCCCCeEEEeecC
Q 037494 270 ISALHPS---SCTPD-----ILSRLPTVQTLRISGDL 298 (394)
Q Consensus 270 L~~~~~~---~~~~~-----~l~~l~~L~~L~l~~~~ 298 (394)
|++..++ ...+. ....+++|+.|.+..|+
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence 8888776 11111 13446677788877775
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.64 E-value=9.1e-09 Score=90.31 Aligned_cols=130 Identities=24% Similarity=0.273 Sum_probs=85.1
Q ss_pred CccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccCCCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEE
Q 037494 240 MQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLK 319 (394)
Q Consensus 240 l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~ 319 (394)
.+.|..++++ +|.+..+-.++.-++.++.|.++.++......+..+++|..|++++|. ...+..+=..+-+++.|.
T Consensus 283 Wq~LtelDLS-~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~---Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLS-GNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNL---LAECVGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhcccc-ccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccch---hHhhhhhHhhhcCEeeee
Confidence 3557777777 777777666666677777777777775555557777777777877774 222222223455677777
Q ss_pred ecCCCCCCccCCCCCCCCCCceEEEEecccCCCC-CcccccCCCCCCeEEEecccccC
Q 037494 320 LVNGSKLSRMVLSEYQFPPSLIQLSLSNTELMED-PMPMLERLPRLQVMKLKRNSYFG 376 (394)
Q Consensus 320 l~~~~~L~~L~p~~~~~l~~L~~L~L~~~~l~~~-~~~~l~~l~~L~~L~l~~n~~~~ 376 (394)
+.+ +.++.| .-++. +-+|..||+++|++... ....+|++|+|+++.+.+|.+.+
T Consensus 359 La~-N~iE~L-SGL~K-LYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 359 LAQ-NKIETL-SGLRK-LYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhh-hhHhhh-hhhHh-hhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 776 555554 33444 66788888888876432 23457888888888887776543
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.64 E-value=3.6e-09 Score=94.57 Aligned_cols=230 Identities=18% Similarity=0.123 Sum_probs=152.2
Q ss_pred CCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCC----CCCccc-------ccCcccccEEecCCCCCc-
Q 037494 141 QSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVL----DQFPPG-------LENLFLLKYLQLNIPTLK- 208 (394)
Q Consensus 141 ~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~----~~lp~~-------i~~l~~L~~L~l~~~~l~- 208 (394)
..+..+..+.++++....-....+...+.+.+.||.-++++... .++|+. +-..++|++++||.|.+.
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 66777888888888775433334444447888888888876542 144433 334568899999988764
Q ss_pred ccc----ccccCCCCCcEEEcc-cCCccccchh--------------hccCccCcEEEeeCCCCCCCCCCC-----CCCC
Q 037494 209 CLP----LLICTLLNLETLEMP-AGYIDHSPEG--------------IWMMQKLMHLNFDSITLPAPPKNY-----SSSL 264 (394)
Q Consensus 209 ~lp----~~l~~l~~L~~L~l~-~~~l~~lp~~--------------i~~l~~L~~L~l~~~~~~~~~p~~-----l~~l 264 (394)
.-+ .-+..+..|++|.|. | .+...... ++.-++||.+... +|.+...+.. +...
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~-rNrlen~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG-RNRLENGGATALAEAFQSH 184 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee-ccccccccHHHHHHHHHhc
Confidence 222 235668889999988 7 66543211 2345788999888 7776655432 4455
Q ss_pred CcCceeCccccC------CCcchhcCCCCCCCeEEEeecC--CccccchhhhhcCCCCCcEEEecCCCCCCccC----C-
Q 037494 265 KNLIFISALHPS------SCTPDILSRLPTVQTLRISGDL--SHYHSGVSKSLCELHKLECLKLVNGSKLSRMV----L- 331 (394)
Q Consensus 265 ~~L~~L~~~~~~------~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~----p- 331 (394)
+.|+.+.+..++ .-....+..+++|+.|++..|. ......+...++.+++|+.|++++|. ++.=- -
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~ 263 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVD 263 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc-cccccHHHHHH
Confidence 778888777766 1233567888999999999886 12223455677888899999998852 21100 0
Q ss_pred -CCCCCCCCceEEEEecccCCCCCcc----cccCCCCCCeEEEecccc
Q 037494 332 -SEYQFPPSLIQLSLSNTELMEDPMP----MLERLPRLQVMKLKRNSY 374 (394)
Q Consensus 332 -~~~~~l~~L~~L~L~~~~l~~~~~~----~l~~l~~L~~L~l~~n~~ 374 (394)
.-.. .|+|+.|.+.+|.++..... .+...|.|+.|+|++|.+
T Consensus 264 al~~~-~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 264 ALKES-APSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHhcc-CCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 1122 68899999999987654432 345688999999988887
No 36
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.51 E-value=1.9e-08 Score=92.29 Aligned_cols=42 Identities=38% Similarity=0.708 Sum_probs=38.8
Q ss_pred cccCCCchhhHHHhccccccCCCceechHHHHHHHHhcCCCC
Q 037494 16 YSVMELPFHLKVYCIYLCVFCPSIEISTRQLCQLWIAEGFIP 57 (394)
Q Consensus 16 ~SY~~L~~~~k~cfl~~~~Fp~~~~i~~~~Li~~wia~gfi~ 57 (394)
+||+.||+++|+||+|||+||+++.|+++.+|++|+||||+.
T Consensus 242 ~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~ 283 (287)
T PF00931_consen 242 LSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFIS 283 (287)
T ss_dssp HHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC
T ss_pred echhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCc
Confidence 799999999999999999999999999999999999999983
No 37
>PLN03150 hypothetical protein; Provisional
Probab=98.49 E-value=2.7e-07 Score=93.28 Aligned_cols=87 Identities=17% Similarity=0.246 Sum_probs=40.8
Q ss_pred eeEEEcCCCCCC-CCcccccCcccccEEecCCCCCc-cccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeC
Q 037494 174 LRVLNWGSAVLD-QFPPGLENLFLLKYLQLNIPTLK-CLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDS 250 (394)
Q Consensus 174 L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~l~-~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~ 250 (394)
++.|+|+++.+. .+|..++.+++|+.|+|++|.+. .+|..++.+++|+.|+++ |.....+|..++++++|++|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls- 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN- 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc-
Confidence 444455554444 44444555555555555555443 344445555555555555 41222444445555555555555
Q ss_pred CCC-CCCCCCCC
Q 037494 251 ITL-PAPPKNYS 261 (394)
Q Consensus 251 ~~~-~~~~p~~l 261 (394)
+|. ...+|..+
T Consensus 499 ~N~l~g~iP~~l 510 (623)
T PLN03150 499 GNSLSGRVPAAL 510 (623)
T ss_pred CCcccccCChHH
Confidence 444 33444443
No 38
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.41 E-value=1.5e-07 Score=84.49 Aligned_cols=207 Identities=16% Similarity=0.153 Sum_probs=145.3
Q ss_pred HhccCCceeEEEcCCCCCC-----CCcccccCcccccEEecCCC---C-Ccccccc-------ccCCCCCcEEEcc-cCC
Q 037494 167 FCENFKYLRVLNWGSAVLD-----QFPPGLENLFLLKYLQLNIP---T-LKCLPLL-------ICTLLNLETLEMP-AGY 229 (394)
Q Consensus 167 ~~~~l~~L~~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~~---~-l~~lp~~-------l~~l~~L~~L~l~-~~~ 229 (394)
....+..++.++++||.+. .+-..+.+.++|+..+++.- + ..++|+. +-..+.|++|+|| |..
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 3388999999999999976 44567778889999999862 2 2356644 3456799999999 832
Q ss_pred ccccch----hhccCccCcEEEeeCCCCCCCCC--------------CCCCCCCcCceeCccccC------CCcchhcCC
Q 037494 230 IDHSPE----GIWMMQKLMHLNFDSITLPAPPK--------------NYSSSLKNLIFISALHPS------SCTPDILSR 285 (394)
Q Consensus 230 l~~lp~----~i~~l~~L~~L~l~~~~~~~~~p--------------~~l~~l~~L~~L~~~~~~------~~~~~~l~~ 285 (394)
-..-++ -+.+...|++|.+. +|.+...- .-+++-+.|+++....+. ......+..
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~-N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~ 183 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLN-NCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS 183 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhh-cCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh
Confidence 223332 35678899999999 88744321 123455678888877776 233445677
Q ss_pred CCCCCeEEEeecC--CccccchhhhhcCCCCCcEEEecCCCCCCccC----C-CCCCCCCCceEEEEecccCCCCCcccc
Q 037494 286 LPTVQTLRISGDL--SHYHSGVSKSLCELHKLECLKLVNGSKLSRMV----L-SEYQFPPSLIQLSLSNTELMEDPMPML 358 (394)
Q Consensus 286 l~~L~~L~l~~~~--~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~----p-~~~~~l~~L~~L~L~~~~l~~~~~~~l 358 (394)
.+.|+.+.+..|+ ......+...+..+++|+.|+|.+ +.+..-- . .+.. +++|+.|++++|.+.......+
T Consensus 184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~D-Ntft~egs~~LakaL~s-~~~L~El~l~dcll~~~Ga~a~ 261 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRD-NTFTLEGSVALAKALSS-WPHLRELNLGDCLLENEGAIAF 261 (382)
T ss_pred ccccceEEEecccccCchhHHHHHHHHhCCcceeeeccc-chhhhHHHHHHHHHhcc-cchheeecccccccccccHHHH
Confidence 7889999999887 122235667888999999999987 2221110 2 3455 7789999999999876654433
Q ss_pred -----cCCCCCCeEEEecccccC
Q 037494 359 -----ERLPRLQVMKLKRNSYFG 376 (394)
Q Consensus 359 -----~~l~~L~~L~l~~n~~~~ 376 (394)
...|+|+.|.+.+|.++.
T Consensus 262 ~~al~~~~p~L~vl~l~gNeIt~ 284 (382)
T KOG1909|consen 262 VDALKESAPSLEVLELAGNEITR 284 (382)
T ss_pred HHHHhccCCCCceeccCcchhHH
Confidence 348999999999887654
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.38 E-value=3.5e-07 Score=62.60 Aligned_cols=54 Identities=28% Similarity=0.399 Sum_probs=29.4
Q ss_pred ceeEEEcCCCCCCCCc-ccccCcccccEEecCCCCCccccc-cccCCCCCcEEEcc
Q 037494 173 YLRVLNWGSAVLDQFP-PGLENLFLLKYLQLNIPTLKCLPL-LICTLLNLETLEMP 226 (394)
Q Consensus 173 ~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~ 226 (394)
+|++|++++|.++.+| ..+..+++|++|++++|.++.+|+ .+..+++|++|+++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~ 57 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLS 57 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEET
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCc
Confidence 4555566655555554 344555555555555555555543 34555555555555
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.36 E-value=3.1e-07 Score=62.87 Aligned_cols=60 Identities=35% Similarity=0.459 Sum_probs=49.0
Q ss_pred CCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccc
Q 037494 313 HKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSY 374 (394)
Q Consensus 313 ~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~ 374 (394)
++|+.|++++ ++++.+.+ ++.. +++|++|++++|++...+...+.++++|++|++++|.+
T Consensus 1 p~L~~L~l~~-n~l~~i~~~~f~~-l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSN-NKLTEIPPDSFSN-LPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETS-STESEECTTTTTT-GTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCC-CCCCccCHHHHcC-CCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4688888887 57888833 7787 89999999999998777777788999999999987753
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.36 E-value=4.3e-08 Score=94.60 Aligned_cols=104 Identities=21% Similarity=0.200 Sum_probs=55.7
Q ss_pred ccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEE
Q 037494 169 ENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLN 247 (394)
Q Consensus 169 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~ 247 (394)
..++.|..|++.+|.++++...+..+++|++|++++|.|..+. .+..+..|+.|+++ | .+..+. ++..+++|+.++
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGN-LISDIS-GLESLKSLKLLD 168 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccC-cchhcc-CCccchhhhccc
Confidence 5556666666666665555444555666666666666655553 44455556666666 5 555443 233455555565
Q ss_pred eeCCCCCCCCCCC-CCCCCcCceeCccccC
Q 037494 248 FDSITLPAPPKNY-SSSLKNLIFISALHPS 276 (394)
Q Consensus 248 l~~~~~~~~~p~~-l~~l~~L~~L~~~~~~ 276 (394)
++ +|....+... +..+.+++.+.+..+.
T Consensus 169 l~-~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 169 LS-YNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred CC-cchhhhhhhhhhhhccchHHHhccCCc
Confidence 55 5554444332 3444555555555444
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.33 E-value=4.3e-08 Score=94.56 Aligned_cols=220 Identities=20% Similarity=0.208 Sum_probs=130.2
Q ss_pred CCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCC
Q 037494 141 QSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNL 220 (394)
Q Consensus 141 ~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L 220 (394)
..+.++..+.+.++.+. .+..++..+++|++|++++|.|+++.. +..+..|+.|++++|.|..++ .+..+.+|
T Consensus 92 ~~~~~l~~l~l~~n~i~-----~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L 164 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIE-----KIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNLISDIS-GLESLKSL 164 (414)
T ss_pred ccccceeeeeccccchh-----hcccchhhhhcchheeccccccccccc-hhhccchhhheeccCcchhcc-CCccchhh
Confidence 56677788888887776 444422778888888888888887643 667777888888888888775 55557888
Q ss_pred cEEEcc-cCCccccchh-hccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccCCCcchhcCCCCC--CCeEEEee
Q 037494 221 ETLEMP-AGYIDHSPEG-IWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPT--VQTLRISG 296 (394)
Q Consensus 221 ~~L~l~-~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~--L~~L~l~~ 296 (394)
+.++++ + .+..+... ...+.+++.+.+. ++....+ .++..+..+..+.+..+.......+..+.. |+.+++.+
T Consensus 165 ~~l~l~~n-~i~~ie~~~~~~~~~l~~l~l~-~n~i~~i-~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~ 241 (414)
T KOG0531|consen 165 KLLDLSYN-RIVDIENDELSELISLEELDLG-GNSIREI-EGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSG 241 (414)
T ss_pred hcccCCcc-hhhhhhhhhhhhccchHHHhcc-CCchhcc-cchHHHHHHHHhhcccccceeccCcccchhHHHHHHhccc
Confidence 888888 7 66666543 4677788888887 6654433 233333344444444433333333343333 77777777
Q ss_pred cCCccccchhhhhcCCCCCcEEEecCCCCCCccCCCCCCCCCCceEEEEecccCCCC----CcccccCCCCCCeEEEecc
Q 037494 297 DLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLIQLSLSNTELMED----PMPMLERLPRLQVMKLKRN 372 (394)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p~~~~~l~~L~~L~L~~~~l~~~----~~~~l~~l~~L~~L~l~~n 372 (394)
++ ....+..+..+..+..|++.+ +.+..+ ..+.. .+.+..+....+++... .....+..+.++...+..|
T Consensus 242 n~---i~~~~~~~~~~~~l~~l~~~~-n~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (414)
T KOG0531|consen 242 NR---ISRSPEGLENLKNLPVLDLSS-NRISNL-EGLER-LPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELN 315 (414)
T ss_pred Cc---cccccccccccccccccchhh-cccccc-ccccc-cchHHHhccCcchhcchhhhhccccccccccccccccccC
Confidence 75 222224455566677777665 333322 11122 34455555555543311 1112455677777777665
Q ss_pred cccC
Q 037494 373 SYFG 376 (394)
Q Consensus 373 ~~~~ 376 (394)
....
T Consensus 316 ~~~~ 319 (414)
T KOG0531|consen 316 PIRK 319 (414)
T ss_pred cccc
Confidence 5443
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.32 E-value=1.7e-06 Score=87.64 Aligned_cols=103 Identities=16% Similarity=0.211 Sum_probs=85.4
Q ss_pred ccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCC-CCcccccCcccccEEecCCCCCc-cccccccCCCCCcEE
Q 037494 146 LQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLD-QFPPGLENLFLLKYLQLNIPTLK-CLPLLICTLLNLETL 223 (394)
Q Consensus 146 lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~l~-~lp~~l~~l~~L~~L 223 (394)
++.|.+.++.... .++.-+.++++|+.|++++|.+. .+|+.++.+++|+.|++++|.+. .+|..++++++|++|
T Consensus 420 v~~L~L~~n~L~g----~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 420 IDGLGLDNQGLRG----FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEECCCCCccc----cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 6677777766642 44444499999999999999987 88999999999999999999987 689999999999999
Q ss_pred Ecc-cCCccccchhhccC-ccCcEEEeeCCCC
Q 037494 224 EMP-AGYIDHSPEGIWMM-QKLMHLNFDSITL 253 (394)
Q Consensus 224 ~l~-~~~l~~lp~~i~~l-~~L~~L~l~~~~~ 253 (394)
+++ |.....+|..++.+ .++..+++. +|.
T Consensus 496 ~Ls~N~l~g~iP~~l~~~~~~~~~l~~~-~N~ 526 (623)
T PLN03150 496 NLNGNSLSGRVPAALGGRLLHRASFNFT-DNA 526 (623)
T ss_pred ECcCCcccccCChHHhhccccCceEEec-CCc
Confidence 999 84556889887764 567788888 776
No 44
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.22 E-value=4.7e-06 Score=78.22 Aligned_cols=131 Identities=20% Similarity=0.145 Sum_probs=70.7
Q ss_pred ccCCceeEEEcCCCCCCCCcccccCcccccEEecCCC-CCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEE
Q 037494 169 ENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIP-TLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHL 246 (394)
Q Consensus 169 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~-~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L 246 (394)
..+++++.|++++|.++.+|. + -.+|+.|.+++| .+..+|..+. .+|++|+++ |..+..+|.+ |+.|
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s------Le~L 117 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES------VRSL 117 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc------cceE
Confidence 556788888888887777762 1 235777888774 5666665542 477888887 6566666653 5555
Q ss_pred EeeCCCC---CCCCCCCCCCCCcCceeCccccCCCcchhcC-CC-CCCCeEEEeecCCccccchhhhhcCCCCCcEEEec
Q 037494 247 NFDSITL---PAPPKNYSSSLKNLIFISALHPSSCTPDILS-RL-PTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLV 321 (394)
Q Consensus 247 ~l~~~~~---~~~~p~~l~~l~~L~~L~~~~~~~~~~~~l~-~l-~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~ 321 (394)
++. .+. +..+|++ |+.|.+..........+. .+ ++|+.|.+.+|. .. .+|..+. .+|+.|.++
T Consensus 118 ~L~-~n~~~~L~~LPss------Lk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~--~i-~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 118 EIK-GSATDSIKNVPNG------LTSLSINSYNPENQARIDNLISPSLKTLSLTGCS--NI-ILPEKLP--ESLQSITLH 185 (426)
T ss_pred EeC-CCCCcccccCcch------HhheeccccccccccccccccCCcccEEEecCCC--cc-cCccccc--ccCcEEEec
Confidence 555 433 3444443 344444222100000011 12 457777776664 21 2232222 356666665
Q ss_pred C
Q 037494 322 N 322 (394)
Q Consensus 322 ~ 322 (394)
.
T Consensus 186 ~ 186 (426)
T PRK15386 186 I 186 (426)
T ss_pred c
Confidence 4
No 45
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.21 E-value=1.3e-06 Score=55.03 Aligned_cols=39 Identities=26% Similarity=0.374 Sum_probs=22.8
Q ss_pred ceeEEEcCCCCCCCCcccccCcccccEEecCCCCCcccc
Q 037494 173 YLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLP 211 (394)
Q Consensus 173 ~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp 211 (394)
+|++|++++|.++++|+.++++++|++|++++|.++.+|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 456666666666666655666666666666666665544
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=4.3e-08 Score=86.04 Aligned_cols=169 Identities=18% Similarity=0.107 Sum_probs=91.6
Q ss_pred cccEEecCCCCCc--cccccccCCCCCcEEEcc-cCCc-cccchhhccCccCcEEEeeCCCC-CCCCCC--CCCCCCcCc
Q 037494 196 LLKYLQLNIPTLK--CLPLLICTLLNLETLEMP-AGYI-DHSPEGIWMMQKLMHLNFDSITL-PAPPKN--YSSSLKNLI 268 (394)
Q Consensus 196 ~L~~L~l~~~~l~--~lp~~l~~l~~L~~L~l~-~~~l-~~lp~~i~~l~~L~~L~l~~~~~-~~~~p~--~l~~l~~L~ 268 (394)
.|++|||+...|+ .+-.-++.+.+|+.|.+. . .+ ..+...+.+-.+|+.|+++ .|. .....- -+.+++.|+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~~~iAkN~~L~~lnls-m~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGL-RLDDPIVNTIAKNSNLVRLNLS-MCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhcccccc-ccCcHHHHHHhccccceeeccc-cccccchhHHHHHHHhhhhHh
Confidence 3667777776554 333334556666666665 4 33 2233456666777777777 655 222211 145666777
Q ss_pred eeCccccC--C----CcchhcCCCCCCCeEEEeecCCccccchh-hhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCc
Q 037494 269 FISALHPS--S----CTPDILSRLPTVQTLRISGDLSHYHSGVS-KSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSL 340 (394)
Q Consensus 269 ~L~~~~~~--~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L 340 (394)
.|+++-|. . .....++ ++|+.|+++++..+...... .-...+++|..|+|+++..|+.=.- .+.. ++.|
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k-f~~L 340 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK-FNYL 340 (419)
T ss_pred hcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh-cchh
Confidence 77776665 1 1111222 35666677766533332222 2235567777777776444432000 2333 6778
Q ss_pred eEEEEecccCCCCCccc---ccCCCCCCeEEEec
Q 037494 341 IQLSLSNTELMEDPMPM---LERLPRLQVMKLKR 371 (394)
Q Consensus 341 ~~L~L~~~~l~~~~~~~---l~~l~~L~~L~l~~ 371 (394)
++|.++.|.. .++.. +...|.|++|++-+
T Consensus 341 ~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 341 QHLSLSRCYD--IIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred eeeehhhhcC--CChHHeeeeccCcceEEEEecc
Confidence 8888888862 33332 45677788888743
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=1.9e-07 Score=82.16 Aligned_cols=186 Identities=18% Similarity=0.173 Sum_probs=100.2
Q ss_pred ceeEEEcCCCCCC--CCcccccCcccccEEecCCCCCc-cccccccCCCCCcEEEcc-cCCccccch--hhccCccCcEE
Q 037494 173 YLRVLNWGSAVLD--QFPPGLENLFLLKYLQLNIPTLK-CLPLLICTLLNLETLEMP-AGYIDHSPE--GIWMMQKLMHL 246 (394)
Q Consensus 173 ~L~~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~l~-~lp~~l~~l~~L~~L~l~-~~~l~~lp~--~i~~l~~L~~L 246 (394)
.|+.||+++..++ ++..-+..+.+|+.|.+.++.+. .+-..+.+-.+|+.|+++ |+.+.+... -+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 3555566555554 33344445555666666665554 233445555666666666 545544332 24456666666
Q ss_pred EeeCCCCCCC-CCC-CCCCC-CcCceeCccccC-----CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEE
Q 037494 247 NFDSITLPAP-PKN-YSSSL-KNLIFISALHPS-----SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECL 318 (394)
Q Consensus 247 ~l~~~~~~~~-~p~-~l~~l-~~L~~L~~~~~~-----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L 318 (394)
+++ .|.... ... .+... .+|..|+++++. .....-..++++|..|+++++- .........+.+++.|++|
T Consensus 266 Nls-Wc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v-~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 266 NLS-WCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV-MLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred Cch-HhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc-ccCchHHHHHHhcchheee
Confidence 666 655211 110 01111 245556665554 1111223457788888888775 1222455667778888888
Q ss_pred EecCCCCCCccCC----CCCCCCCCceEEEEecccCCCCCccccc-CCCCCC
Q 037494 319 KLVNGSKLSRMVL----SEYQFPPSLIQLSLSNTELMEDPMPMLE-RLPRLQ 365 (394)
Q Consensus 319 ~l~~~~~L~~L~p----~~~~~l~~L~~L~L~~~~l~~~~~~~l~-~l~~L~ 365 (394)
+++.|-.+- | .+.+ .|+|.+|++.+|- ....++.+. .+|+|+
T Consensus 344 SlsRCY~i~---p~~~~~l~s-~psl~yLdv~g~v-sdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 344 SLSRCYDII---PETLLELNS-KPSLVYLDVFGCV-SDTTMELLKEMLSHLK 390 (419)
T ss_pred ehhhhcCCC---hHHeeeecc-CcceEEEEecccc-CchHHHHHHHhCcccc
Confidence 887642222 3 3455 7889999988875 333344433 455554
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.02 E-value=6.1e-06 Score=51.97 Aligned_cols=39 Identities=31% Similarity=0.307 Sum_probs=28.8
Q ss_pred ccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccc
Q 037494 195 FLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSP 234 (394)
Q Consensus 195 ~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp 234 (394)
++|++|++++|.|+.+|+.++++++|++|+++ | .+..+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 46788888888888888778888888888888 7 676654
No 49
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.98 E-value=1.5e-05 Score=74.89 Aligned_cols=129 Identities=16% Similarity=0.170 Sum_probs=84.4
Q ss_pred CCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCC-CCCCcccccCcccccEEecCCC-CCccccccccCCC
Q 037494 141 QSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAV-LDQFPPGLENLFLLKYLQLNIP-TLKCLPLLICTLL 218 (394)
Q Consensus 141 ~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~-~~~lp~~i~~l~~L~~L~l~~~-~l~~lp~~l~~l~ 218 (394)
..+.+++.|.+.++... .+|.+ -.+|+.|.++++. ++.+|+.+. .+|++|.+++| .+..+|+.
T Consensus 49 ~~~~~l~~L~Is~c~L~-----sLP~L---P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s----- 113 (426)
T PRK15386 49 EEARASGRLYIKDCDIE-----SLPVL---PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES----- 113 (426)
T ss_pred HHhcCCCEEEeCCCCCc-----ccCCC---CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc-----
Confidence 45688999999998664 33433 2369999998866 677776553 58999999998 78888865
Q ss_pred CCcEEEcc-c--CCccccchhhccCccCcEEEeeCCCC-C--CCCCCCCCCC-CcCceeCccccC-CCcchhcCCCCCCC
Q 037494 219 NLETLEMP-A--GYIDHSPEGIWMMQKLMHLNFDSITL-P--APPKNYSSSL-KNLIFISALHPS-SCTPDILSRLPTVQ 290 (394)
Q Consensus 219 ~L~~L~l~-~--~~l~~lp~~i~~l~~L~~L~l~~~~~-~--~~~p~~l~~l-~~L~~L~~~~~~-~~~~~~l~~l~~L~ 290 (394)
|+.|++. + ..+..+|.+ |+.|.+. ++. . ..+| ..+ ++|++|.+.+|. ...+..+. .+|+
T Consensus 114 -Le~L~L~~n~~~~L~~LPss------Lk~L~I~-~~n~~~~~~lp---~~LPsSLk~L~Is~c~~i~LP~~LP--~SLk 180 (426)
T PRK15386 114 -VRSLEIKGSATDSIKNVPNG------LTSLSIN-SYNPENQARID---NLISPSLKTLSLTGCSNIILPEKLP--ESLQ 180 (426)
T ss_pred -cceEEeCCCCCcccccCcch------Hhheecc-ccccccccccc---cccCCcccEEEecCCCcccCccccc--ccCc
Confidence 6666666 3 245667764 4556554 322 1 1111 122 478888888776 33344344 4788
Q ss_pred eEEEeec
Q 037494 291 TLRISGD 297 (394)
Q Consensus 291 ~L~l~~~ 297 (394)
.|.++.+
T Consensus 181 ~L~ls~n 187 (426)
T PRK15386 181 SITLHIE 187 (426)
T ss_pred EEEeccc
Confidence 8888665
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=2.2e-06 Score=75.55 Aligned_cols=96 Identities=22% Similarity=0.238 Sum_probs=53.9
Q ss_pred EEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCC---CcccccCcccccEEecCCCCCc----cccccccCCCCC
Q 037494 148 SFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQ---FPPGLENLFLLKYLQLNIPTLK----CLPLLICTLLNL 220 (394)
Q Consensus 148 ~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~---lp~~i~~l~~L~~L~l~~~~l~----~lp~~l~~l~~L 220 (394)
.+.+.++.+.. ...+..|-...+.++.+++.+|.+++ +-.-+.++++|++|+++.|.+. .+| -.+.+|
T Consensus 49 llvln~~~id~--~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl 123 (418)
T KOG2982|consen 49 LLVLNGSIIDN--EGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNL 123 (418)
T ss_pred hheecCCCCCc--chhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccce
Confidence 44555555542 22334444567778888888888763 3344457777888888777643 333 234566
Q ss_pred cEEEcc-cCCc--cccchhhccCccCcEEEee
Q 037494 221 ETLEMP-AGYI--DHSPEGIWMMQKLMHLNFD 249 (394)
Q Consensus 221 ~~L~l~-~~~l--~~lp~~i~~l~~L~~L~l~ 249 (394)
++|-|. + .+ ......+..+|+++.|+++
T Consensus 124 ~~lVLNgT-~L~w~~~~s~l~~lP~vtelHmS 154 (418)
T KOG2982|consen 124 RVLVLNGT-GLSWTQSTSSLDDLPKVTELHMS 154 (418)
T ss_pred EEEEEcCC-CCChhhhhhhhhcchhhhhhhhc
Confidence 666666 4 22 1222334455566666665
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.88 E-value=6e-06 Score=83.74 Aligned_cols=102 Identities=23% Similarity=0.075 Sum_probs=61.1
Q ss_pred ccccEEecCCCC-C-cccccccc-CCCCCcEEEcc-c-CCccccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCce
Q 037494 195 FLLKYLQLNIPT-L-KCLPLLIC-TLLNLETLEMP-A-GYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIF 269 (394)
Q Consensus 195 ~~L~~L~l~~~~-l-~~lp~~l~-~l~~L~~L~l~-~-~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~ 269 (394)
.+|++|+++|.. + ...|..++ -||.|++|.++ - -...++-.-..++++|..||++ ++.+..+ .++++|++||+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS-~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDIS-GTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecC-CCCccCc-HHHhccccHHH
Confidence 356666666632 1 23343443 36677777666 2 0112222334467777777777 7665555 56777777777
Q ss_pred eCccccC---CCcchhcCCCCCCCeEEEeecC
Q 037494 270 ISALHPS---SCTPDILSRLPTVQTLRISGDL 298 (394)
Q Consensus 270 L~~~~~~---~~~~~~l~~l~~L~~L~l~~~~ 298 (394)
|.+.+-. ......+-.|++|+.|+++...
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 7776655 3445567777788888887765
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.79 E-value=2.5e-05 Score=79.33 Aligned_cols=107 Identities=18% Similarity=0.226 Sum_probs=69.4
Q ss_pred CCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCcccc--ccccCCC
Q 037494 141 QSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLP--LLICTLL 218 (394)
Q Consensus 141 ~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp--~~l~~l~ 218 (394)
..++.||+|.+.+.... ..++..++.++++|+.||+++++++.+ ..+++|++|+.|.+.+=.+..-. ..+.+|+
T Consensus 145 ~~LPsL~sL~i~~~~~~---~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~ 220 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFD---NDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLK 220 (699)
T ss_pred hhCcccceEEecCceec---chhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhccc
Confidence 56778888888776554 223445557788888888888887776 56778888888877775554322 3567788
Q ss_pred CCcEEEcc-cCCccccch-------hhccCccCcEEEeeCCCC
Q 037494 219 NLETLEMP-AGYIDHSPE-------GIWMMQKLMHLNFDSITL 253 (394)
Q Consensus 219 ~L~~L~l~-~~~l~~lp~-------~i~~l~~L~~L~l~~~~~ 253 (394)
+|++||+| . ....-+. .-..+|+||.||.+ ++.
T Consensus 221 ~L~vLDIS~~-~~~~~~~ii~qYlec~~~LpeLrfLDcS-gTd 261 (699)
T KOG3665|consen 221 KLRVLDISRD-KNNDDTKIIEQYLECGMVLPELRFLDCS-GTD 261 (699)
T ss_pred CCCeeecccc-ccccchHHHHHHHHhcccCccccEEecC-Ccc
Confidence 88888887 4 2111111 11237777888777 543
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=1.2e-05 Score=71.04 Aligned_cols=83 Identities=19% Similarity=0.047 Sum_probs=48.2
Q ss_pred CCCCCccEEEEecCCCccchhcc-hhHHhccCCceeEEEcCCCCCCCCcccc-cCcccccEEecCCCCCc--cccccccC
Q 037494 141 QSDMYLQSFLNHSSESDHLALID-CENFCENFKYLRVLNWGSAVLDQFPPGL-ENLFLLKYLQLNIPTLK--CLPLLICT 216 (394)
Q Consensus 141 ~~~~~lr~L~l~~~~~~~~~~~~-l~~~~~~l~~L~~L~l~~~~~~~lp~~i-~~l~~L~~L~l~~~~l~--~lp~~l~~ 216 (394)
..++.++.+++-+|.+. .|. +..++.+++.|++|+++.|.+...-... ..+++|+.|-|.++.+. .....+..
T Consensus 68 ~~~~~v~elDL~~N~iS---dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~ 144 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLIS---DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDD 144 (418)
T ss_pred HHhhhhhhhhcccchhc---cHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhc
Confidence 45666777777766664 332 2555577777777777777655222222 34567777777766443 34444555
Q ss_pred CCCCcEEEcc
Q 037494 217 LLNLETLEMP 226 (394)
Q Consensus 217 l~~L~~L~l~ 226 (394)
++.++.|.++
T Consensus 145 lP~vtelHmS 154 (418)
T KOG2982|consen 145 LPKVTELHMS 154 (418)
T ss_pred chhhhhhhhc
Confidence 6556655555
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.76 E-value=3.7e-07 Score=89.17 Aligned_cols=121 Identities=19% Similarity=0.163 Sum_probs=71.5
Q ss_pred ceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccch-hhccCccCcEEEeeC
Q 037494 173 YLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPE-GIWMMQKLMHLNFDS 250 (394)
Q Consensus 173 ~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~-~i~~l~~L~~L~l~~ 250 (394)
.|.+.+.++|.+.-+-.++.-++.|+.|+|++|++.+.- .+..++.|++|||+ | .+..+|. +.... +|+.|.++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~~L~lr- 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQLLNLR- 240 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhh-hheeeeec-
Confidence 344455555555544555666667777777777666554 55666677777777 6 6666653 11222 26666776
Q ss_pred CCCCCCCCCCCCCCCcCceeCccccC---CCcchhcCCCCCCCeEEEeecC
Q 037494 251 ITLPAPPKNYSSSLKNLIFISALHPS---SCTPDILSRLPTVQTLRISGDL 298 (394)
Q Consensus 251 ~~~~~~~p~~l~~l~~L~~L~~~~~~---~~~~~~l~~l~~L~~L~l~~~~ 298 (394)
+|.+..+ .++.+|.+|+.|++++|- -...+-+..|..|+.|++.+|+
T Consensus 241 nN~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 241 NNALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred ccHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 6665554 356666777777666654 2233344555566666776665
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.76 E-value=5e-06 Score=65.02 Aligned_cols=88 Identities=16% Similarity=0.115 Sum_probs=60.0
Q ss_pred ccCCceeEEEcCCCCCCCCcccccCc-ccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEE
Q 037494 169 ENFKYLRVLNWGSAVLDQFPPGLENL-FLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHL 246 (394)
Q Consensus 169 ~~l~~L~~L~l~~~~~~~lp~~i~~l-~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L 246 (394)
.+...|...++++|.+.++|+.+... +.++.|++++|.+.++|.++..++.|+.|+++ | .+...|..+..|.+|-.|
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDML 128 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHhHHHh
Confidence 55566667777777777777655433 36677777777777777777777777777777 6 666667666667777777
Q ss_pred EeeCCCCCCCCC
Q 037494 247 NFDSITLPAPPK 258 (394)
Q Consensus 247 ~l~~~~~~~~~p 258 (394)
+.. ++....+|
T Consensus 129 ds~-~na~~eid 139 (177)
T KOG4579|consen 129 DSP-ENARAEID 139 (177)
T ss_pred cCC-CCccccCc
Confidence 766 66555554
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.63 E-value=4.3e-07 Score=88.77 Aligned_cols=113 Identities=19% Similarity=0.125 Sum_probs=49.5
Q ss_pred CccccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccCCCcchhcCCC-CCCCeEEEeecCCccccchhh
Q 037494 229 YIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRL-PTVQTLRISGDLSHYHSGVSK 307 (394)
Q Consensus 229 ~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~ 307 (394)
.+..+..++.-++.|++|+++ +|...+.- .+..++.|++|+++.|....++.++.- .+|..|.+++|. ...+ .
T Consensus 175 ~L~~mD~SLqll~ale~LnLs-hNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~---l~tL-~ 248 (1096)
T KOG1859|consen 175 RLVLMDESLQLLPALESLNLS-HNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNA---LTTL-R 248 (1096)
T ss_pred hHHhHHHHHHHHHHhhhhccc-hhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccH---HHhh-h
Confidence 444444455555555555555 55544432 444555555555555541111111110 125555555553 1111 2
Q ss_pred hhcCCCCCcEEEecCC--CCCCccCC-CCCCCCCCceEEEEecccC
Q 037494 308 SLCELHKLECLKLVNG--SKLSRMVL-SEYQFPPSLIQLSLSNTEL 350 (394)
Q Consensus 308 ~l~~~~~L~~L~l~~~--~~L~~L~p-~~~~~l~~L~~L~L~~~~l 350 (394)
.+.++++|+.|+++.+ ....+|.| |. +..|+.|.|.+|.+
T Consensus 249 gie~LksL~~LDlsyNll~~hseL~pLws---Ls~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 249 GIENLKSLYGLDLSYNLLSEHSELEPLWS---LSSLIVLWLEGNPL 291 (1096)
T ss_pred hHHhhhhhhccchhHhhhhcchhhhHHHH---HHHHHHHhhcCCcc
Confidence 3444555555555541 11122213 33 44555555655554
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.57 E-value=3.8e-06 Score=65.70 Aligned_cols=103 Identities=20% Similarity=0.188 Sum_probs=82.5
Q ss_pred CceeEEEcCCCCCCCCc---ccccCcccccEEecCCCCCccccccccC-CCCCcEEEcc-cCCccccchhhccCccCcEE
Q 037494 172 KYLRVLNWGSAVLDQFP---PGLENLFLLKYLQLNIPTLKCLPLLICT-LLNLETLEMP-AGYIDHSPEGIWMMQKLMHL 246 (394)
Q Consensus 172 ~~L~~L~l~~~~~~~lp---~~i~~l~~L~~L~l~~~~l~~lp~~l~~-l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L 246 (394)
+.+..++|+.|.+-.++ ..+....+|+..++++|.++++|+.+.. .+.+++|++. | .+.++|..+..++.|+.|
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSL 105 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhc
Confidence 44556788888766554 4455667888899999999999988764 4589999999 8 999999999999999999
Q ss_pred EeeCCCCCCCCCCCCCCCCcCceeCccccC
Q 037494 247 NFDSITLPAPPKNYSSSLKNLIFISALHPS 276 (394)
Q Consensus 247 ~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~ 276 (394)
+++ .|++...|.-+..|.++-.|....+.
T Consensus 106 Nl~-~N~l~~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 106 NLR-FNPLNAEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred ccc-cCccccchHHHHHHHhHHHhcCCCCc
Confidence 999 99988888877777777777655443
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.41 E-value=0.00025 Score=59.41 Aligned_cols=97 Identities=19% Similarity=0.157 Sum_probs=40.6
Q ss_pred cEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhcc-CccCcEEEeeCCCCCCCCC--CCCCCCCcCceeCcc
Q 037494 198 KYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWM-MQKLMHLNFDSITLPAPPK--NYSSSLKNLIFISAL 273 (394)
Q Consensus 198 ~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~-l~~L~~L~l~~~~~~~~~p--~~l~~l~~L~~L~~~ 273 (394)
..+||++|.+..++ .+..++.|.+|.+. | .+..+.+.+.. +++|..|.+. +|.+.++- ..+..++.|++|.+.
T Consensus 45 d~iDLtdNdl~~l~-~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~Lt-nNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 45 DAIDLTDNDLRKLD-NLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILT-NNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ceecccccchhhcc-cCCCccccceEEecCC-cceeeccchhhhccccceEEec-CcchhhhhhcchhccCCccceeeec
Confidence 34444444444332 23344445555554 4 44444333332 3345555554 44433221 123344444444444
Q ss_pred ccC-----CCcchhcCCCCCCCeEEEeec
Q 037494 274 HPS-----SCTPDILSRLPTVQTLRISGD 297 (394)
Q Consensus 274 ~~~-----~~~~~~l~~l~~L~~L~l~~~ 297 (394)
+++ ....--+..+++|+.|++...
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhhh
Confidence 443 111122344555555555444
No 59
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.08 E-value=0.00039 Score=60.95 Aligned_cols=207 Identities=14% Similarity=0.100 Sum_probs=95.6
Q ss_pred CCceeEEEcCCCCCC-----CCcccccCcccccEEecCCCC---Cc-ccc-------ccccCCCCCcEEEcc-cCCcccc
Q 037494 171 FKYLRVLNWGSAVLD-----QFPPGLENLFLLKYLQLNIPT---LK-CLP-------LLICTLLNLETLEMP-AGYIDHS 233 (394)
Q Consensus 171 l~~L~~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~~~---l~-~lp-------~~l~~l~~L~~L~l~-~~~l~~l 233 (394)
+..+..++++||.|. .+...|.+-.+|+..+++.-. .+ ++| +.+-++++|+..+|+ |..-.+.
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 455555555555543 233444444555555554411 11 222 233456666666666 5333333
Q ss_pred ch----hhccCccCcEEEeeCCCCCCCCCCC-C-------------CCCCcCceeCccccC-CC-----cchhcCCCCCC
Q 037494 234 PE----GIWMMQKLMHLNFDSITLPAPPKNY-S-------------SSLKNLIFISALHPS-SC-----TPDILSRLPTV 289 (394)
Q Consensus 234 p~----~i~~l~~L~~L~l~~~~~~~~~p~~-l-------------~~l~~L~~L~~~~~~-~~-----~~~~l~~l~~L 289 (394)
|+ -|.+-+.|.||.++ +|....+..+ | .+-+.|++.....+. .. ....+..-.+|
T Consensus 109 ~e~L~d~is~~t~l~HL~l~-NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l 187 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLN-NNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL 187 (388)
T ss_pred chHHHHHHhcCCCceeEEee-cCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence 33 24445666666666 6554333211 1 122334444443333 11 11123333466
Q ss_pred CeEEEeecCC--cc-ccchhhhhcCCCCCcEEEecCCCCCCccC----C-CCCCCCCCceEEEEecccCCCCCccc----
Q 037494 290 QTLRISGDLS--HY-HSGVSKSLCELHKLECLKLVNGSKLSRMV----L-SEYQFPPSLIQLSLSNTELMEDPMPM---- 357 (394)
Q Consensus 290 ~~L~l~~~~~--~~-~~~~~~~l~~~~~L~~L~l~~~~~L~~L~----p-~~~~~l~~L~~L~L~~~~l~~~~~~~---- 357 (394)
+.+.+..|+- .. ..-+...+..+++|+.|+|.++ .+...- . .+.. -+.|+.|.+.+|-++......
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~~-W~~lrEL~lnDClls~~G~~~v~~~ 265 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALCE-WNLLRELRLNDCLLSNEGVKSVLRR 265 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhcc-cchhhhccccchhhccccHHHHHHH
Confidence 7777776651 00 1111223445567777777652 111110 1 1222 234677777777655444322
Q ss_pred c--cCCCCCCeEEEecccccCceeE
Q 037494 358 L--ERLPRLQVMKLKRNSYFGRKLA 380 (394)
Q Consensus 358 l--~~l~~L~~L~l~~n~~~~~~~~ 380 (394)
+ ...|+|..|...+|...+..+.
T Consensus 266 f~e~~~p~l~~L~~~Yne~~~~~i~ 290 (388)
T COG5238 266 FNEKFVPNLMPLPGDYNERRGGIIL 290 (388)
T ss_pred hhhhcCCCccccccchhhhcCceee
Confidence 2 1356677777666665554443
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.87 E-value=0.0017 Score=54.56 Aligned_cols=102 Identities=22% Similarity=0.142 Sum_probs=64.0
Q ss_pred CceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccC-CCCCcEEEcc-cCCccccch--hhccCccCcEEE
Q 037494 172 KYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICT-LLNLETLEMP-AGYIDHSPE--GIWMMQKLMHLN 247 (394)
Q Consensus 172 ~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~-l~~L~~L~l~-~~~l~~lp~--~i~~l~~L~~L~ 247 (394)
.....+|+++|.+..++ .+..+..|.+|.+++|.|..+-+.+.. +++|.+|.+. | .+.++.+ .+..+++|++|.
T Consensus 42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceee
Confidence 34456677777655443 245566777777777777766655543 4567777777 5 6655532 355677778887
Q ss_pred eeCCCCCCCCCCC----CCCCCcCceeCccccC
Q 037494 248 FDSITLPAPPKNY----SSSLKNLIFISALHPS 276 (394)
Q Consensus 248 l~~~~~~~~~p~~----l~~l~~L~~L~~~~~~ 276 (394)
+- +|+...-..- +..+++|++|+.....
T Consensus 120 ll-~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 120 LL-GNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ec-CCchhcccCceeEEEEecCcceEeehhhhh
Confidence 77 7664443321 5677788888777665
No 61
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.70 E-value=0.00012 Score=67.75 Aligned_cols=225 Identities=17% Similarity=0.104 Sum_probs=122.7
Q ss_pred CCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCC-CCC--CcccccCcccccEEecCCCC-----------
Q 037494 141 QSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAV-LDQ--FPPGLENLFLLKYLQLNIPT----------- 206 (394)
Q Consensus 141 ~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~-~~~--lp~~i~~l~~L~~L~l~~~~----------- 206 (394)
..+++++.+.+..+.... +..+..+...+++|.+|+++.+. ++. +-.-....+.++.+.+.||.
T Consensus 187 ~~C~~l~~l~L~~c~~iT--~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~ 264 (483)
T KOG4341|consen 187 RYCRKLRHLNLHSCSSIT--DVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAA 264 (483)
T ss_pred HhcchhhhhhhcccchhH--HHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHh
Confidence 567788888777754432 22334444667778888887765 332 22222233334444444331
Q ss_pred ----------------Ccccc--ccccCCCCCcEEEcc-cCCccccch-h-hccCccCcEEEeeCCCC-CCCCC-CCC-C
Q 037494 207 ----------------LKCLP--LLICTLLNLETLEMP-AGYIDHSPE-G-IWMMQKLMHLNFDSITL-PAPPK-NYS-S 262 (394)
Q Consensus 207 ----------------l~~lp--~~l~~l~~L~~L~l~-~~~l~~lp~-~-i~~l~~L~~L~l~~~~~-~~~~p-~~l-~ 262 (394)
++... .--..+..||+|+.+ +.++...+- . ..+-.+|+.|.++ +|. +...- ..+ .
T Consensus 265 ~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~-~c~~fsd~~ft~l~r 343 (483)
T KOG4341|consen 265 AYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELS-GCQQFSDRGFTMLGR 343 (483)
T ss_pred ccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEecc-ccchhhhhhhhhhhc
Confidence 11100 001235677888887 545544331 2 2245788888888 776 33221 112 3
Q ss_pred CCCcCceeCccccC----CCcchhcCCCCCCCeEEEeecCC---ccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCC
Q 037494 263 SLKNLIFISALHPS----SCTPDILSRLPTVQTLRISGDLS---HYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEY 334 (394)
Q Consensus 263 ~l~~L~~L~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~---~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~ 334 (394)
+...|+.+.+..+. .....--.+.+.|+.|.+++|.. +....+...-..+..|+.+.+++||.+.+-.- .+.
T Consensus 344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~ 423 (483)
T KOG4341|consen 344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS 423 (483)
T ss_pred CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh
Confidence 45677777777776 11222223457788888887761 11112233445667888888888775543211 344
Q ss_pred CCCCCceEEEEecccCC-CCCcccc-cCCCCCCeEEE
Q 037494 335 QFPPSLIQLSLSNTELM-EDPMPML-ERLPRLQVMKL 369 (394)
Q Consensus 335 ~~l~~L~~L~L~~~~l~-~~~~~~l-~~l~~L~~L~l 369 (394)
. +++|+.+++-+|+-. ......+ .++|+++...+
T Consensus 424 ~-c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 424 I-CRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred h-CcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 4 778888888888532 2222333 46888777666
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.67 E-value=0.00017 Score=63.31 Aligned_cols=99 Identities=20% Similarity=0.254 Sum_probs=71.0
Q ss_pred CCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCcccc--ccccCCCC
Q 037494 142 SDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLP--LLICTLLN 219 (394)
Q Consensus 142 ~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp--~~l~~l~~ 219 (394)
++.+++.|.+.++... ++ .+..+|+.|++|.|+-|+++.+-+ +..+++|+.|.|+.|.|..+- ..+.++++
T Consensus 17 dl~~vkKLNcwg~~L~-----DI-sic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlps 89 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLD-----DI-SICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPS 89 (388)
T ss_pred HHHHhhhhcccCCCcc-----HH-HHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCch
Confidence 3556777777787776 33 344889999999999999887643 778889999999998887664 34678888
Q ss_pred CcEEEcc-cCCccccch-----hhccCccCcEEE
Q 037494 220 LETLEMP-AGYIDHSPE-----GIWMMQKLMHLN 247 (394)
Q Consensus 220 L~~L~l~-~~~l~~lp~-----~i~~l~~L~~L~ 247 (394)
|++|-|. |....+-+. .+.-||+|+.|+
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8888877 422222222 255678888886
No 63
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.65 E-value=0.0025 Score=56.00 Aligned_cols=229 Identities=17% Similarity=0.082 Sum_probs=121.0
Q ss_pred CCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCC----CCc-------ccccCcccccEEecCCCCCc-cc
Q 037494 143 DMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLD----QFP-------PGLENLFLLKYLQLNIPTLK-CL 210 (394)
Q Consensus 143 ~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~----~lp-------~~i~~l~~L~~L~l~~~~l~-~l 210 (394)
+..+..+.+++|.+..-....+...+.+-++|++.+++.-... +++ +.+-++++|+..+|+.|.+. ..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 4555566666665543222223233355666666666544321 222 23345566777777766554 34
Q ss_pred ccc----ccCCCCCcEEEcc-cCCccccch-hhc-------------cCccCcEEEeeCCCCCCCCCCC-----CCCCCc
Q 037494 211 PLL----ICTLLNLETLEMP-AGYIDHSPE-GIW-------------MMQKLMHLNFDSITLPAPPKNY-----SSSLKN 266 (394)
Q Consensus 211 p~~----l~~l~~L~~L~l~-~~~l~~lp~-~i~-------------~l~~L~~L~l~~~~~~~~~p~~-----l~~l~~ 266 (394)
|+. ++.-.+|++|.++ | .+..+.. -|+ .-|.|+..... .|++...|.. +..=.+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg-rNRlengs~~~~a~~l~sh~~ 186 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG-RNRLENGSKELSAALLESHEN 186 (388)
T ss_pred chHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEec-cchhccCcHHHHHHHHHhhcC
Confidence 433 4456667777777 5 5544321 122 24667777766 6665554432 111135
Q ss_pred CceeCccccC--CC-----cchhcCCCCCCCeEEEeecCCc--cccchhhhhcCCCCCcEEEecCCC--------CCCcc
Q 037494 267 LIFISALHPS--SC-----TPDILSRLPTVQTLRISGDLSH--YHSGVSKSLCELHKLECLKLVNGS--------KLSRM 329 (394)
Q Consensus 267 L~~L~~~~~~--~~-----~~~~l~~l~~L~~L~l~~~~~~--~~~~~~~~l~~~~~L~~L~l~~~~--------~L~~L 329 (394)
|+++.+..++ .. ....+..+.+|+.|++..|.-. ....+...++.++.|+.|.+.+|- -++.+
T Consensus 187 lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f 266 (388)
T COG5238 187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRF 266 (388)
T ss_pred ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHh
Confidence 6666666665 11 1234556788889999888611 112344567778888999888751 01111
Q ss_pred CCCCCCCCCCceEEEEecccCCCCCccc-----c--cCCCCCCeEEEecccccC
Q 037494 330 VLSEYQFPPSLIQLSLSNTELMEDPMPM-----L--ERLPRLQVMKLKRNSYFG 376 (394)
Q Consensus 330 ~p~~~~~l~~L~~L~L~~~~l~~~~~~~-----l--~~l~~L~~L~l~~n~~~~ 376 (394)
.-.. .|+|..|-..+|.+....+.. + ..+|-|..|.+.+|.+..
T Consensus 267 --~e~~-~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 267 --NEKF-VPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred --hhhc-CCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 0011 456666666666543332211 1 356777777776676543
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.56 E-value=0.00066 Score=59.18 Aligned_cols=107 Identities=18% Similarity=0.233 Sum_probs=67.4
Q ss_pred CCCCCcCceeCccccCCCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccC--CCCCCCCC
Q 037494 261 SSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMV--LSEYQFPP 338 (394)
Q Consensus 261 l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~--p~~~~~l~ 338 (394)
.-.+..|+.|++.++.......+..|++|+.|.++.|.......++-....+++|++|++++ +.++-+. +.+.. +.
T Consensus 39 ~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~pl~~-l~ 116 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRPLKE-LE 116 (260)
T ss_pred cccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecC-Cccccccccchhhh-hc
Confidence 34556677777777766666677888888888888884223334443444558888888887 4333321 23444 67
Q ss_pred CceEEEEecccCCCCCc---ccccCCCCCCeEEE
Q 037494 339 SLIQLSLSNTELMEDPM---PMLERLPRLQVMKL 369 (394)
Q Consensus 339 ~L~~L~L~~~~l~~~~~---~~l~~l~~L~~L~l 369 (394)
+|..|++.+|..+...- ..+.-+|+|++|+-
T Consensus 117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred chhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 78888888886443111 23455777877775
No 65
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.37 E-value=0.00014 Score=67.25 Aligned_cols=224 Identities=16% Similarity=0.076 Sum_probs=111.8
Q ss_pred CCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCC-CCC--CcccccCcccccEEecCCC-CCcccc-c-cccCC
Q 037494 144 MYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAV-LDQ--FPPGLENLFLLKYLQLNIP-TLKCLP-L-LICTL 217 (394)
Q Consensus 144 ~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~-~~~--lp~~i~~l~~L~~L~l~~~-~l~~lp-~-~l~~l 217 (394)
..+|.|.+.++.... ...+..+-..+++++.|.+.++. +++ +-..-.....|+++++..| .++... . -...+
T Consensus 138 g~lk~LSlrG~r~v~--~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC 215 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVG--DSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC 215 (483)
T ss_pred cccccccccccccCC--cchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh
Confidence 457777777776654 33344454677777777777776 331 1122234567777777774 344221 1 12346
Q ss_pred CCCcEEEcc-cCCccc--cchhhccCccCcEEEeeCCCCCCCCCCCC----CCCCcCceeCccccC----CCcchhcCCC
Q 037494 218 LNLETLEMP-AGYIDH--SPEGIWMMQKLMHLNFDSITLPAPPKNYS----SSLKNLIFISALHPS----SCTPDILSRL 286 (394)
Q Consensus 218 ~~L~~L~l~-~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~p~~l----~~l~~L~~L~~~~~~----~~~~~~l~~l 286 (394)
++|++++++ |..+.. +-.-.....+++.+... +|.-... ..+ +....+.++++..|. ......=..+
T Consensus 216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~k-GC~e~~l-e~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c 293 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLK-GCLELEL-EALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC 293 (483)
T ss_pred hhHHHhhhccCchhhcCcchHHhccchhhhhhhhc-ccccccH-HHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence 777777777 644443 11122334445555555 4431111 001 112222333333333 1111111224
Q ss_pred CCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccC-CCC-CCCCCCceEEEEecccCCCCC-cccc-cCCC
Q 037494 287 PTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMV-LSE-YQFPPSLIQLSLSNTELMEDP-MPML-ERLP 362 (394)
Q Consensus 287 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~-p~~-~~~l~~L~~L~L~~~~l~~~~-~~~l-~~l~ 362 (394)
..|+.|..+++.......+-+-.....+|+.|-+++|.++.... ..+ .+ .+.|+.+++..|...... +..+ .++|
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn-~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRN-CPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcC-ChhhhhhcccccceehhhhHhhhccCCc
Confidence 56677777776521111222223445678888887765544331 012 23 677888888877542222 2222 3678
Q ss_pred CCCeEEEecc
Q 037494 363 RLQVMKLKRN 372 (394)
Q Consensus 363 ~L~~L~l~~n 372 (394)
.|+.|.++++
T Consensus 373 ~lr~lslshc 382 (483)
T KOG4341|consen 373 RLRVLSLSHC 382 (483)
T ss_pred hhccCChhhh
Confidence 8888888754
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.05 E-value=0.0031 Score=55.11 Aligned_cols=105 Identities=19% Similarity=0.190 Sum_probs=47.6
Q ss_pred ccCCceeEEEcCCCCCCCCcccccCcccccEEecCCC--CCc-cccccccCCCCCcEEEcc-cCCccccc--hhhccCcc
Q 037494 169 ENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIP--TLK-CLPLLICTLLNLETLEMP-AGYIDHSP--EGIWMMQK 242 (394)
Q Consensus 169 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~--~l~-~lp~~l~~l~~L~~L~l~-~~~l~~lp--~~i~~l~~ 242 (394)
..+..|+.|++.+..++++. .+..|++|++|.++.| .+. .++..+.++++|++|+++ | ++..+- ..+..+++
T Consensus 40 d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcc
Confidence 44445555555555544221 1334556666666665 332 333333444666666666 4 433211 12344555
Q ss_pred CcEEEeeCCCCCCCCCCC----CCCCCcCceeCccccC
Q 037494 243 LMHLNFDSITLPAPPKNY----SSSLKNLIFISALHPS 276 (394)
Q Consensus 243 L~~L~l~~~~~~~~~p~~----l~~l~~L~~L~~~~~~ 276 (394)
|..|++. +|....+-.. +.-+++|..|+...+.
T Consensus 118 L~~Ldl~-n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 118 LKSLDLF-NCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhhhcc-cCCccccccHHHHHHHHhhhhccccccccC
Confidence 5555555 5543332111 2234445555444443
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.94 E-value=0.0031 Score=32.98 Aligned_cols=18 Identities=33% Similarity=0.543 Sum_probs=8.4
Q ss_pred ccEEecCCCCCccccccc
Q 037494 197 LKYLQLNIPTLKCLPLLI 214 (394)
Q Consensus 197 L~~L~l~~~~l~~lp~~l 214 (394)
|++|++++|.++.+|+++
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 444444444444444443
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.67 E-value=0.00046 Score=60.71 Aligned_cols=103 Identities=19% Similarity=0.178 Sum_probs=78.1
Q ss_pred cCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccch--hhccCccCcEE
Q 037494 170 NFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPE--GIWMMQKLMHL 246 (394)
Q Consensus 170 ~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~--~i~~l~~L~~L 246 (394)
.+.+.+.|++-||++..+. ....++.|+.|.|+=|+|+.+- .+..+++|+.|.|+ | .|..+.+ .+.++++|+.|
T Consensus 17 dl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhH
Confidence 3556677888888887653 2457888999999999999884 67789999999999 8 7877754 57789999999
Q ss_pred EeeCCCC-CCCCCCC-----CCCCCcCceeCccccC
Q 037494 247 NFDSITL-PAPPKNY-----SSSLKNLIFISALHPS 276 (394)
Q Consensus 247 ~l~~~~~-~~~~p~~-----l~~l~~L~~L~~~~~~ 276 (394)
.+. .|+ ...-+.. +..|++|+.|+-....
T Consensus 94 WL~-ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~Vt 128 (388)
T KOG2123|consen 94 WLD-ENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVT 128 (388)
T ss_pred hhc-cCCcccccchhHHHHHHHHcccchhccCcccc
Confidence 998 877 4444433 5678888888765543
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.45 E-value=0.0057 Score=31.98 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=18.2
Q ss_pred ceeEEEcCCCCCCCCcccccCc
Q 037494 173 YLRVLNWGSAVLDQFPPGLENL 194 (394)
Q Consensus 173 ~L~~L~l~~~~~~~lp~~i~~l 194 (394)
+|++|++++|.++.+|+.+++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999877653
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.56 E-value=0.0049 Score=51.85 Aligned_cols=34 Identities=29% Similarity=0.453 Sum_probs=22.0
Q ss_pred CCCceEEEEecc-cCCCCCcccccCCCCCCeEEEe
Q 037494 337 PPSLIQLSLSNT-ELMEDPMPMLERLPRLQVMKLK 370 (394)
Q Consensus 337 l~~L~~L~L~~~-~l~~~~~~~l~~l~~L~~L~l~ 370 (394)
.++|+.|+|++| +|+...+..+.++++|+.|.+.
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 566777777766 4555555666667777777663
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.24 E-value=0.027 Score=27.29 Aligned_cols=16 Identities=38% Similarity=0.490 Sum_probs=5.6
Q ss_pred cccEEecCCCCCcccc
Q 037494 196 LLKYLQLNIPTLKCLP 211 (394)
Q Consensus 196 ~L~~L~l~~~~l~~lp 211 (394)
+|+.|++++|.++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3444455444444443
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.72 E-value=0.013 Score=57.66 Aligned_cols=170 Identities=26% Similarity=0.205 Sum_probs=94.8
Q ss_pred CcccccEEecCCC-CCcc--ccccccCCCCCcEEEcc-c-CCccccc----hhhccCccCcEEEeeCCCC-CCCCC-CCC
Q 037494 193 NLFLLKYLQLNIP-TLKC--LPLLICTLLNLETLEMP-A-GYIDHSP----EGIWMMQKLMHLNFDSITL-PAPPK-NYS 261 (394)
Q Consensus 193 ~l~~L~~L~l~~~-~l~~--lp~~l~~l~~L~~L~l~-~-~~l~~lp----~~i~~l~~L~~L~l~~~~~-~~~~p-~~l 261 (394)
..+.|+.|.+.++ .+.. +-+.....++|+.|+++ + ......+ .....+.+|+.|+++ .+. ....- ..+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~-~~~~isd~~l~~l 264 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLS-GCGLVTDIGLSAL 264 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchh-hhhccCchhHHHH
Confidence 3677888888876 4544 33456678899999987 3 1111111 223356888899988 766 22221 112
Q ss_pred C-CCCcCceeCccccC----CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecC---CCCCCccC---
Q 037494 262 S-SLKNLIFISALHPS----SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVN---GSKLSRMV--- 330 (394)
Q Consensus 262 ~-~l~~L~~L~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~---~~~L~~L~--- 330 (394)
+ .+++|++|.+..|. .........+++|+.|++++|.......+......+++|+.|.+.. |+.++.+.
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~ 344 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSG 344 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHH
Confidence 2 36788888866665 2233344567789999999887221222333344455555555433 22222211
Q ss_pred ---------C--CCCCCCCCceEEEEecccCCCCCc-ccccCCCCC
Q 037494 331 ---------L--SEYQFPPSLIQLSLSNTELMEDPM-PMLERLPRL 364 (394)
Q Consensus 331 ---------p--~~~~~l~~L~~L~L~~~~l~~~~~-~~l~~l~~L 364 (394)
. .... +++++.+.+..|....... ..+.++|+|
T Consensus 345 ~~~~~~d~~~~~~~~~-~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 345 LLTLTSDDLAELILRS-CPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred hhccCchhHhHHHHhc-CCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 1 3334 6777777777776333331 334556655
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.21 E-value=0.0027 Score=54.55 Aligned_cols=86 Identities=17% Similarity=0.071 Sum_probs=59.4
Q ss_pred hHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccC
Q 037494 165 ENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKL 243 (394)
Q Consensus 165 ~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L 243 (394)
-++ ..++..++||++.+.+..+-..++-++.|..|+++.+.++.+|+..+.+..+..+++. | ..+..|.+.++.+.+
T Consensus 36 ~ei-~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 36 REI-ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHP 113 (326)
T ss_pred hhh-hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCc
Confidence 344 5566677777777766666566666677777777777777777777777777777777 5 667777777777777
Q ss_pred cEEEeeCCCC
Q 037494 244 MHLNFDSITL 253 (394)
Q Consensus 244 ~~L~l~~~~~ 253 (394)
++++.- .+.
T Consensus 114 k~~e~k-~~~ 122 (326)
T KOG0473|consen 114 KKNEQK-KTE 122 (326)
T ss_pred chhhhc-cCc
Confidence 777766 544
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.60 E-value=0.0057 Score=52.59 Aligned_cols=89 Identities=11% Similarity=0.050 Sum_probs=75.7
Q ss_pred CCc-ccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCCC
Q 037494 186 QFP-PGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSS 263 (394)
Q Consensus 186 ~lp-~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~ 263 (394)
.+| ..|.....-+.||++.|.+..+-..++.++.|+.|+++ + .+.-+|...+++..+++++.. .|.....|.+.+.
T Consensus 32 ~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~-~n~~~~~p~s~~k 109 (326)
T KOG0473|consen 32 EIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASH-KNNHSQQPKSQKK 109 (326)
T ss_pred ccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhh-ccchhhCCccccc
Confidence 444 55777888899999999888887788888999999999 9 999999999999999999998 7778888999999
Q ss_pred CCcCceeCccccC
Q 037494 264 LKNLIFISALHPS 276 (394)
Q Consensus 264 l~~L~~L~~~~~~ 276 (394)
++.++.++.-.+.
T Consensus 110 ~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 110 EPHPKKNEQKKTE 122 (326)
T ss_pred cCCcchhhhccCc
Confidence 8888888765543
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.45 E-value=0.14 Score=27.73 Aligned_cols=19 Identities=32% Similarity=0.219 Sum_probs=9.2
Q ss_pred ccccEEecCCCCCcccccc
Q 037494 195 FLLKYLQLNIPTLKCLPLL 213 (394)
Q Consensus 195 ~~L~~L~l~~~~l~~lp~~ 213 (394)
++|++|++++|.++.+|++
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3445555555555555443
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.45 E-value=0.14 Score=27.73 Aligned_cols=19 Identities=32% Similarity=0.219 Sum_probs=9.2
Q ss_pred ccccEEecCCCCCcccccc
Q 037494 195 FLLKYLQLNIPTLKCLPLL 213 (394)
Q Consensus 195 ~~L~~L~l~~~~l~~lp~~ 213 (394)
++|++|++++|.++.+|++
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3445555555555555443
No 77
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=90.03 E-value=0.66 Score=36.31 Aligned_cols=12 Identities=17% Similarity=0.216 Sum_probs=3.8
Q ss_pred ccCCceeEEEcC
Q 037494 169 ENFKYLRVLNWG 180 (394)
Q Consensus 169 ~~l~~L~~L~l~ 180 (394)
.++++|+.+.+.
T Consensus 9 ~~~~~l~~i~~~ 20 (129)
T PF13306_consen 9 YNCSNLESITFP 20 (129)
T ss_dssp TT-TT--EEEET
T ss_pred hCCCCCCEEEEC
Confidence 344444444443
No 78
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=88.50 E-value=1.3 Score=34.55 Aligned_cols=98 Identities=18% Similarity=0.201 Sum_probs=44.1
Q ss_pred CCCCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCCc-ccccCcccccEEecCCCCCcccccc-ccCCC
Q 037494 142 SDMYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQFP-PGLENLFLLKYLQLNIPTLKCLPLL-ICTLL 218 (394)
Q Consensus 142 ~~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~lp~~-l~~l~ 218 (394)
.+++++.+.+... .. .+ ...|..++.|+.+.+.++ +..++ .++.....++.+.+.. .+..++.. +..+.
T Consensus 10 ~~~~l~~i~~~~~-~~-----~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 10 NCSNLESITFPNT-IK-----KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp T-TT--EEEETST--------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred CCCCCCEEEECCC-ee-----EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 4456666665431 11 22 333477777777777664 55554 4455666777777755 44444433 34477
Q ss_pred CCcEEEcccCCccccch-hhccCccCcEEEee
Q 037494 219 NLETLEMPAGYIDHSPE-GIWMMQKLMHLNFD 249 (394)
Q Consensus 219 ~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~ 249 (394)
+|+.+++.. .+..++. .+.+. +|+.+.+.
T Consensus 82 ~l~~i~~~~-~~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 82 NLKNIDIPS-NITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TECEEEETT-T-BEEHTTTTTT--T--EEE-T
T ss_pred cccccccCc-cccEEchhhhcCC-CceEEEEC
Confidence 777777752 2344443 24444 66666654
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.65 E-value=0.51 Score=25.45 Aligned_cols=20 Identities=30% Similarity=0.527 Sum_probs=13.2
Q ss_pred CCCCcEEEcc-cCCccccchhh
Q 037494 217 LLNLETLEMP-AGYIDHSPEGI 237 (394)
Q Consensus 217 l~~L~~L~l~-~~~l~~lp~~i 237 (394)
+.+|++|+++ | .+..+|.++
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNN-QLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHH
Confidence 3567777777 6 777776654
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.65 E-value=0.51 Score=25.45 Aligned_cols=20 Identities=30% Similarity=0.527 Sum_probs=13.2
Q ss_pred CCCCcEEEcc-cCCccccchhh
Q 037494 217 LLNLETLEMP-AGYIDHSPEGI 237 (394)
Q Consensus 217 l~~L~~L~l~-~~~l~~lp~~i 237 (394)
+.+|++|+++ | .+..+|.++
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNN-QLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHH
Confidence 3567777777 6 777776654
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.68 E-value=0.093 Score=44.35 Aligned_cols=61 Identities=23% Similarity=0.270 Sum_probs=25.8
Q ss_pred CCCCCcCceeCccccC---CCcchhcCC-CCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecC
Q 037494 261 SSSLKNLIFISALHPS---SCTPDILSR-LPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVN 322 (394)
Q Consensus 261 l~~l~~L~~L~~~~~~---~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 322 (394)
+..+++++.|.+.+|. ....+-++. .++|+.|++++|. ...+.-...+..+++|+.|.|.+
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~-rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCP-RITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCC-eechhHHHHHHHhhhhHHHHhcC
Confidence 3444455555555554 112222222 2355555555554 12222223444455555555544
No 82
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=82.79 E-value=0.21 Score=48.99 Aligned_cols=112 Identities=24% Similarity=0.186 Sum_probs=71.4
Q ss_pred CCCcCceeCccccC--CC--cchhcCCCCCCCeEEEeec-C--CccccchhhhhcCCCCCcEEEecCCCCCCccC-CCCC
Q 037494 263 SLKNLIFISALHPS--SC--TPDILSRLPTVQTLRISGD-L--SHYHSGVSKSLCELHKLECLKLVNGSKLSRMV-LSEY 334 (394)
Q Consensus 263 ~l~~L~~L~~~~~~--~~--~~~~l~~l~~L~~L~l~~~-~--~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~-p~~~ 334 (394)
..++|+.|.+..+. .. ........++|+.|++.++ . .............+++|+.|+++.+..+...- .++.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 46788888888776 22 4456677889999999863 2 11111122334455788889988744343320 1222
Q ss_pred CCCCCceEEEEeccc-CCCCCcccc-cCCCCCCeEEEecccc
Q 037494 335 QFPPSLIQLSLSNTE-LMEDPMPML-ERLPRLQVMKLKRNSY 374 (394)
Q Consensus 335 ~~l~~L~~L~L~~~~-l~~~~~~~l-~~l~~L~~L~l~~n~~ 374 (394)
..+++|+.|.+.+|. ++...+..+ ..+++|++|+++.+..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 226799999988887 555555554 4689999999986543
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=74.48 E-value=0.22 Score=26.40 Aligned_cols=14 Identities=43% Similarity=0.683 Sum_probs=6.6
Q ss_pred CCceEEEEecccCC
Q 037494 338 PSLIQLSLSNTELM 351 (394)
Q Consensus 338 ~~L~~L~L~~~~l~ 351 (394)
++|+.|+|++|++.
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45556666665543
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=70.59 E-value=2.9 Score=22.73 Aligned_cols=17 Identities=35% Similarity=0.376 Sum_probs=10.5
Q ss_pred cccEEecCCCCCccccc
Q 037494 196 LLKYLQLNIPTLKCLPL 212 (394)
Q Consensus 196 ~L~~L~l~~~~l~~lp~ 212 (394)
+|++|+.++|.++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45666666666666663
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=70.24 E-value=3.5 Score=22.41 Aligned_cols=16 Identities=25% Similarity=0.218 Sum_probs=9.3
Q ss_pred ccccEEecCCCCCccc
Q 037494 195 FLLKYLQLNIPTLKCL 210 (394)
Q Consensus 195 ~~L~~L~l~~~~l~~l 210 (394)
++|+.|++++|.|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4566666666665443
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=61.40 E-value=2 Score=42.03 Aligned_cols=83 Identities=23% Similarity=0.193 Sum_probs=40.0
Q ss_pred CCCCCcEEEecCCCCCCccC--CCCCCCCCCceEEEEecccCCCCCcccccC--CCCCCeEEEecccccCceeEEe----
Q 037494 311 ELHKLECLKLVNGSKLSRMV--LSEYQFPPSLIQLSLSNTELMEDPMPMLER--LPRLQVMKLKRNSYFGRKLACV---- 382 (394)
Q Consensus 311 ~~~~L~~L~l~~~~~L~~L~--p~~~~~l~~L~~L~L~~~~l~~~~~~~l~~--l~~L~~L~l~~n~~~~~~~~~~---- 382 (394)
+.+.+..++|++ ++|..|. ..+....|+|+.|+|++|.........+.+ ...|+.|.+.+|.++..-....
T Consensus 216 n~p~i~sl~lsn-NrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 216 NFPEILSLSLSN-NRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred CCcceeeeeccc-chhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence 345566666665 4444442 122212567777777777222222223322 2237777777776543221100
Q ss_pred -CCCCCcCCcccC
Q 037494 383 -GSGGFPELQVLT 394 (394)
Q Consensus 383 -~~~~fp~L~~L~ 394 (394)
-...||+|..|+
T Consensus 295 ~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 295 AIRELFPKLLRLD 307 (585)
T ss_pred HHHHhcchheeec
Confidence 012477777664
No 87
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=57.20 E-value=0.23 Score=48.70 Aligned_cols=36 Identities=28% Similarity=0.224 Sum_probs=16.7
Q ss_pred CceeEEEcCCCCCC-----CCcccccCcccccEEecCCCCC
Q 037494 172 KYLRVLNWGSAVLD-----QFPPGLENLFLLKYLQLNIPTL 207 (394)
Q Consensus 172 ~~L~~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~~~l 207 (394)
..+++|++..|.+. .+.+.+....+++.++++.|.+
T Consensus 144 ~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 144 CLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGL 184 (478)
T ss_pred HHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhccc
Confidence 33444555444433 2233444445555555555543
No 88
>PF14162 YozD: YozD-like protein
Probab=46.41 E-value=22 Score=22.67 Aligned_cols=26 Identities=27% Similarity=0.526 Sum_probs=16.1
Q ss_pred hcCCCC--CChHHHHHHHHHHHHhcCce
Q 037494 52 AEGFIP--YNSEETAEYYLKELIHRGFI 77 (394)
Q Consensus 52 a~gfi~--~~~~~~~~~~l~~L~~~~ll 77 (394)
..||++ ...+++|.--|+-|+.+|++
T Consensus 23 kRGyvP~e~El~eiADItFeYll~K~iI 50 (57)
T PF14162_consen 23 KRGYVPTEEELEEIADITFEYLLEKCII 50 (57)
T ss_pred HccCCCcHHHHHHHHHHHHHHHHHHHhh
Confidence 356665 55566666666666666665
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=46.10 E-value=16 Score=20.03 Aligned_cols=13 Identities=31% Similarity=0.284 Sum_probs=7.6
Q ss_pred cccEEecCCCCCc
Q 037494 196 LLKYLQLNIPTLK 208 (394)
Q Consensus 196 ~L~~L~l~~~~l~ 208 (394)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4566666666553
No 90
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=41.38 E-value=12 Score=19.97 Aligned_cols=12 Identities=42% Similarity=0.620 Sum_probs=8.7
Q ss_pred CCceEEEEeccc
Q 037494 338 PSLIQLSLSNTE 349 (394)
Q Consensus 338 ~~L~~L~L~~~~ 349 (394)
++|+.|+|++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 567777777774
No 91
>PF04433 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in eukaryotic chromosomal proteins. It is named after the proteins SWI3, RSC8 and MOIRA in which it was first recognised. This domain is predicted to mediate protein-protein interactions in the assembly of chromatin-protein complexes. The SWIRM domain can be linked to different domains, such as the ZZ-type zinc finger (IPR000433 from INTERPRO), the Myb DNA-binding domain (IPR001005 from INTERPRO), the HORMA domain (IPR003511 from INTERPRO), the amino-oxidase domain, the chromo domain (IPR000953 from INTERPRO), and the JAB1/PAD1 domain.; GO: 0005515 protein binding; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2L3D_A ....
Probab=32.56 E-value=40 Score=24.25 Aligned_cols=38 Identities=11% Similarity=0.067 Sum_probs=32.3
Q ss_pred cccCCCchhhHHHhccccc--cCCCceechHHHHHHHHhc
Q 037494 16 YSVMELPFHLKVYCIYLCV--FCPSIEISTRQLCQLWIAE 53 (394)
Q Consensus 16 ~SY~~L~~~~k~cfl~~~~--Fp~~~~i~~~~Li~~wia~ 53 (394)
++++.|...+|+.|-..-. .|+.|---|+.++..|...
T Consensus 10 ~~~~~l~~~E~~~~~e~~~~~~p~~Yl~iRn~il~~w~~n 49 (86)
T PF04433_consen 10 FDPDKLSEIEKQLCPEFFIGKTPEQYLKIRNTILAEWRKN 49 (86)
T ss_dssp TTTTSS-HHHHHHCHHCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCHHHHHHhHHHhccCChHHHHHHHHHHHHHHHHC
Confidence 7899999999999988777 8888888899999999764
No 92
>PF15385 SARG: Specifically androgen-regulated gene protein
Probab=24.44 E-value=33 Score=33.75 Aligned_cols=15 Identities=20% Similarity=0.118 Sum_probs=14.3
Q ss_pred ccCCCchhhHHHhcc
Q 037494 17 SVMELPFHLKVYCIY 31 (394)
Q Consensus 17 SY~~L~~~~k~cfl~ 31 (394)
||++|..++|.|+||
T Consensus 7 Sl~~LS~EEkecLlF 21 (497)
T PF15385_consen 7 SLDYLSAEEKECLLF 21 (497)
T ss_pred cccccchhhHHHHHH
Confidence 899999999999987
No 93
>PRK04841 transcriptional regulator MalT; Provisional
Probab=24.02 E-value=1.7e+02 Score=31.33 Aligned_cols=73 Identities=16% Similarity=0.160 Sum_probs=49.9
Q ss_pred cCCCchhhHHHhccccccCCCceechHHHHHHHHhcCCCCCChHHHHHHHHHHHHhcCceeeeecCCCCcEeEEEcCHHH
Q 037494 18 VMELPFHLKVYCIYLCVFCPSIEISTRQLCQLWIAEGFIPYNSEETAEYYLKELIHRGFIQVSKRRAGGTIKACYVPSLV 97 (394)
Q Consensus 18 Y~~L~~~~k~cfl~~~~Fp~~~~i~~~~Li~~wia~gfi~~~~~~~~~~~l~~L~~~~ll~~~~~~~~g~~~~~~mhdli 97 (394)
++.||.+.+..++..|+++ .++ .+++..-. | .+-++..+++|...+++...... ++ .+++.|+++
T Consensus 260 ~~~l~~~~~~~l~~~a~~~---~~~-~~l~~~l~--~------~~~~~~~L~~l~~~~l~~~~~~~-~~--~~yr~H~L~ 324 (903)
T PRK04841 260 LDNVDLETRHFLLRCSVLR---SMN-DALIVRVT--G------EENGQMRLEELERQGLFIQRMDD-SG--EWFRYHPLF 324 (903)
T ss_pred HhcCCHHHHHHHHHhcccc---cCC-HHHHHHHc--C------CCcHHHHHHHHHHCCCeeEeecC-CC--CEEehhHHH
Confidence 7899999999999999986 233 33333111 1 12246789999999997543211 11 357899999
Q ss_pred HHHHHHHh
Q 037494 98 YYSLLLVA 105 (394)
Q Consensus 98 ~~l~~~~~ 105 (394)
+++...-.
T Consensus 325 r~~l~~~l 332 (903)
T PRK04841 325 ASFLRHRC 332 (903)
T ss_pred HHHHHHHH
Confidence 99987664
No 94
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=23.81 E-value=2.7e+02 Score=20.70 Aligned_cols=40 Identities=15% Similarity=0.113 Sum_probs=28.2
Q ss_pred CChHHHHHHHHHHHHhcCceeeeecCCCCcEeEEEcCHHHHHH
Q 037494 58 YNSEETAEYYLKELIHRGFIQVSKRRAGGTIKACYVPSLVYYS 100 (394)
Q Consensus 58 ~~~~~~~~~~l~~L~~~~ll~~~~~~~~g~~~~~~mhdli~~l 100 (394)
.-....|..|++.|++++++...+.+ +-+.+.+-+--.++
T Consensus 42 Nlny~~~~~yi~~L~~~Gli~~~~~~---~~~~y~lT~KG~~f 81 (95)
T COG3432 42 NLNYKRAQKYIEMLVEKGLIIKQDNG---RRKVYELTEKGKRF 81 (95)
T ss_pred CcCHHHHHHHHHHHHhCCCEEeccCC---ccceEEEChhHHHH
Confidence 56788999999999999977766533 22346666655444
No 95
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=22.77 E-value=1.8e+02 Score=19.26 Aligned_cols=31 Identities=16% Similarity=0.255 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcCceeeeecCCCCcEeEEEc
Q 037494 63 TAEYYLKELIHRGFIQVSKRRAGGTIKACYV 93 (394)
Q Consensus 63 ~~~~~l~~L~~~~ll~~~~~~~~g~~~~~~m 93 (394)
.....++.|+.+++++......+++...++.
T Consensus 34 ~vs~~i~~L~~~glv~~~~~~~d~R~~~~~L 64 (68)
T PF13463_consen 34 TVSRIIKKLEEKGLVEKERDPHDKRSKRYRL 64 (68)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSCTTSEEEEE
T ss_pred HHHHHHHHHHHCCCEEecCCCCcCCeeEEEe
Confidence 3457799999999999888777777555543
No 96
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=22.06 E-value=1.3e+02 Score=21.31 Aligned_cols=50 Identities=20% Similarity=0.243 Sum_probs=33.1
Q ss_pred HHhccccccCCCceechHHHHHHHHhcCCCCCChHHHHHHHHHHHHhcCceeeeecC
Q 037494 27 VYCIYLCVFCPSIEISTRQLCQLWIAEGFIPYNSEETAEYYLKELIHRGFIQVSKRR 83 (394)
Q Consensus 27 ~cfl~~~~Fp~~~~i~~~~Li~~wia~gfi~~~~~~~~~~~l~~L~~~~ll~~~~~~ 83 (394)
++..|++-.+++..++.+++...- ...+.....+++.|...++++.....
T Consensus 12 ~~l~~la~~~~~~~~s~~eiA~~~-------~i~~~~l~kil~~L~~~Gli~s~~G~ 61 (83)
T PF02082_consen 12 RILLYLARHPDGKPVSSKEIAERL-------GISPSYLRKILQKLKKAGLIESSRGR 61 (83)
T ss_dssp HHHHHHHCTTTSC-BEHHHHHHHH-------TS-HHHHHHHHHHHHHTTSEEEETST
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHH-------CcCHHHHHHHHHHHhhCCeeEecCCC
Confidence 456677777776656666655421 34566677889999999999776543
Done!