Query 037494
Match_columns 394
No_of_seqs 280 out of 2756
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 22:15:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037494.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037494hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 4.1E-26 1.4E-30 212.0 14.5 225 141-375 78-314 (328)
2 4fcg_A Uncharacterized protein 99.9 3E-25 1E-29 206.2 16.2 202 170-378 79-293 (328)
3 1ogq_A PGIP-2, polygalacturona 99.9 8.3E-25 2.8E-29 202.0 9.9 238 144-393 50-296 (313)
4 3o6n_A APL1; leucine-rich repe 99.9 2.6E-23 8.9E-28 197.9 16.5 253 121-393 44-344 (390)
5 3v47_A TOLL-like receptor 5B a 99.9 6.4E-23 2.2E-27 199.0 16.3 130 121-256 29-168 (455)
6 4fmz_A Internalin; leucine ric 99.9 1.2E-22 4.1E-27 190.1 17.1 253 121-394 65-339 (347)
7 4fmz_A Internalin; leucine ric 99.9 1.1E-22 3.7E-27 190.4 16.6 237 121-376 43-301 (347)
8 1ogq_A PGIP-2, polygalacturona 99.9 1.1E-23 3.7E-28 194.5 8.8 238 122-373 50-302 (313)
9 1xku_A Decorin; proteoglycan, 99.9 3.1E-22 1E-26 186.1 18.5 241 121-376 51-307 (330)
10 2z66_A Variable lymphocyte rec 99.9 5E-23 1.7E-27 189.3 13.1 232 133-376 18-262 (306)
11 3oja_B Anopheles plasmodium-re 99.9 7.5E-23 2.6E-27 205.3 15.3 254 121-393 50-350 (597)
12 2id5_A Lingo-1, leucine rich r 99.9 1.4E-22 4.9E-27 197.9 15.7 263 121-393 31-325 (477)
13 4eco_A Uncharacterized protein 99.9 1.6E-23 5.5E-28 211.5 8.4 210 172-393 305-541 (636)
14 3rgz_A Protein brassinosteroid 99.9 4.9E-23 1.7E-27 212.5 12.1 245 123-378 395-720 (768)
15 2ft3_A Biglycan; proteoglycan, 99.9 2.2E-22 7.5E-27 187.3 15.1 239 121-375 53-307 (332)
16 3zyi_A Leucine-rich repeat-con 99.9 4.2E-22 1.4E-26 193.2 17.7 239 125-374 57-302 (452)
17 2id5_A Lingo-1, leucine rich r 99.9 8E-22 2.7E-26 192.6 19.5 232 132-375 21-261 (477)
18 3zyj_A Leucine-rich repeat-con 99.9 5.1E-22 1.7E-26 192.0 17.5 239 125-374 46-291 (440)
19 4ecn_A Leucine-rich repeat pro 99.9 1.9E-22 6.4E-27 208.3 15.2 243 121-376 447-767 (876)
20 3rgz_A Protein brassinosteroid 99.9 1.2E-22 4.2E-27 209.6 13.6 225 143-378 393-696 (768)
21 1xku_A Decorin; proteoglycan, 99.9 6.8E-22 2.3E-26 183.8 16.6 238 124-378 33-279 (330)
22 4eco_A Uncharacterized protein 99.9 3.6E-22 1.2E-26 201.7 13.9 215 167-393 325-571 (636)
23 2ft3_A Biglycan; proteoglycan, 99.9 3.8E-22 1.3E-26 185.6 12.5 237 123-377 34-279 (332)
24 1o6v_A Internalin A; bacterial 99.9 1.6E-21 5.5E-26 189.8 16.9 249 121-393 45-314 (466)
25 2z66_A Variable lymphocyte rec 99.9 4.1E-22 1.4E-26 183.2 11.6 215 171-393 27-253 (306)
26 3t6q_A CD180 antigen; protein- 99.9 3.1E-21 1.1E-25 193.9 18.6 198 173-376 255-463 (606)
27 3v47_A TOLL-like receptor 5B a 99.9 2.3E-21 7.8E-26 188.1 16.8 136 133-276 21-165 (455)
28 3vq2_A TLR4, TOLL-like recepto 99.9 6E-22 2E-26 199.2 13.0 239 122-375 285-534 (606)
29 3o6n_A APL1; leucine-rich repe 99.9 1.2E-21 4E-26 186.4 14.1 148 141-297 42-196 (390)
30 4ecn_A Leucine-rich repeat pro 99.9 1.3E-21 4.3E-26 202.1 14.7 125 121-253 514-655 (876)
31 1o6v_A Internalin A; bacterial 99.9 2.9E-21 1E-25 188.0 16.4 250 121-393 67-358 (466)
32 3bz5_A Internalin-J, INLJ; leu 99.9 6.7E-21 2.3E-25 184.7 18.5 239 121-394 41-292 (457)
33 3t6q_A CD180 antigen; protein- 99.9 1.4E-21 4.8E-26 196.5 13.9 245 122-377 278-538 (606)
34 2z7x_B TOLL-like receptor 1, v 99.9 2.5E-21 8.5E-26 191.1 14.9 124 121-254 20-150 (520)
35 2z80_A TOLL-like receptor 2, v 99.9 1.3E-21 4.5E-26 183.5 12.1 221 144-376 52-315 (353)
36 2z7x_B TOLL-like receptor 1, v 99.9 2.9E-21 9.9E-26 190.6 14.5 121 126-255 4-128 (520)
37 1ozn_A Reticulon 4 receptor; N 99.9 1.1E-20 3.7E-25 171.9 16.8 199 172-375 32-238 (285)
38 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5E-21 1.7E-25 190.8 15.6 78 169-249 73-154 (562)
39 3j0a_A TOLL-like receptor 5; m 99.9 1.5E-20 5.2E-25 195.8 19.4 261 121-393 23-367 (844)
40 3bz5_A Internalin-J, INLJ; leu 99.9 2.5E-20 8.5E-25 180.7 19.3 228 121-375 63-299 (457)
41 3vq2_A TLR4, TOLL-like recepto 99.8 4.1E-21 1.4E-25 193.1 13.5 242 121-376 306-559 (606)
42 3oja_B Anopheles plasmodium-re 99.8 7E-21 2.4E-25 191.0 13.6 148 141-297 48-202 (597)
43 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2.2E-20 7.4E-25 186.2 16.6 103 121-231 51-159 (562)
44 1h6u_A Internalin H; cell adhe 99.8 2.3E-20 7.9E-25 171.7 15.1 194 142-354 39-233 (308)
45 2z80_A TOLL-like receptor 2, v 99.8 1.2E-20 4.1E-25 177.0 12.8 213 172-393 52-306 (353)
46 1ozn_A Reticulon 4 receptor; N 99.8 3.3E-20 1.1E-24 168.7 15.3 209 175-393 14-230 (285)
47 2z62_A TOLL-like receptor 4, v 99.8 4E-20 1.4E-24 167.3 15.6 198 172-376 28-238 (276)
48 3zyj_A Leucine-rich repeat-con 99.8 4.1E-20 1.4E-24 178.6 16.6 221 121-352 63-293 (440)
49 3zyi_A Leucine-rich repeat-con 99.8 4.3E-20 1.5E-24 179.1 16.4 223 121-353 74-305 (452)
50 2z81_A CD282 antigen, TOLL-lik 99.8 1.1E-20 3.8E-25 187.6 11.5 151 121-276 25-183 (549)
51 2o6q_A Variable lymphocyte rec 99.8 1.9E-19 6.5E-24 162.4 18.4 192 174-373 18-216 (270)
52 2z63_A TOLL-like receptor 4, v 99.8 3.3E-20 1.1E-24 185.0 14.2 238 121-373 27-336 (570)
53 2z63_A TOLL-like receptor 4, v 99.8 4.8E-20 1.6E-24 183.8 15.1 240 122-376 282-532 (570)
54 1ziw_A TOLL-like receptor 3; i 99.8 2.8E-20 9.5E-25 189.5 13.2 243 121-373 24-307 (680)
55 1p9a_G Platelet glycoprotein I 99.8 2.5E-19 8.4E-24 163.3 17.3 170 172-350 31-207 (290)
56 3j0a_A TOLL-like receptor 5; m 99.8 3E-19 1E-23 186.1 19.2 246 121-376 47-376 (844)
57 1h6u_A Internalin H; cell adhe 99.8 1.7E-19 5.7E-24 165.9 14.2 195 169-378 38-233 (308)
58 3o53_A Protein LRIM1, AGAP0063 99.8 4.3E-21 1.5E-25 177.3 2.5 213 142-375 32-250 (317)
59 2z81_A CD282 antigen, TOLL-lik 99.8 1.6E-19 5.4E-24 179.3 12.8 179 134-322 17-205 (549)
60 1wwl_A Monocyte differentiatio 99.8 8.3E-21 2.8E-25 175.0 2.8 196 170-376 93-310 (312)
61 3oja_A Leucine-rich immune mol 99.8 1.1E-19 3.7E-24 177.7 10.2 213 142-375 32-250 (487)
62 3o53_A Protein LRIM1, AGAP0063 99.8 7.2E-20 2.5E-24 169.1 8.4 211 165-393 27-242 (317)
63 3rfs_A Internalin B, repeat mo 99.8 4.4E-19 1.5E-23 160.2 13.3 170 142-322 39-214 (272)
64 1ziw_A TOLL-like receptor 3; i 99.8 6.6E-19 2.3E-23 179.4 15.0 197 173-376 382-598 (680)
65 3g06_A SSPH2 (leucine-rich rep 99.8 1.7E-18 5.9E-23 173.1 17.5 220 121-376 60-298 (622)
66 3oja_A Leucine-rich immune mol 99.8 1.1E-19 3.9E-24 177.5 8.6 230 121-370 33-270 (487)
67 3rfs_A Internalin B, repeat mo 99.8 4.4E-19 1.5E-23 160.2 11.1 195 169-378 38-238 (272)
68 4g8a_A TOLL-like receptor 4; l 99.8 7.5E-19 2.6E-23 177.1 13.4 126 121-253 51-184 (635)
69 2o6q_A Variable lymphocyte rec 99.8 5.9E-18 2E-22 152.6 16.9 196 145-353 17-220 (270)
70 1p9a_G Platelet glycoprotein I 99.8 4.1E-18 1.4E-22 155.2 15.7 195 169-374 7-207 (290)
71 1wwl_A Monocyte differentiatio 99.8 2E-19 6.8E-24 165.8 6.4 209 174-393 65-301 (312)
72 2xwt_C Thyrotropin receptor; s 99.8 1.5E-18 5E-23 153.6 11.8 189 173-370 32-234 (239)
73 2z62_A TOLL-like receptor 4, v 99.8 1.2E-18 4.2E-23 157.5 11.3 197 144-353 28-239 (276)
74 4glp_A Monocyte differentiatio 99.8 8E-19 2.7E-23 161.6 9.9 224 142-377 62-309 (310)
75 2xwt_C Thyrotropin receptor; s 99.8 2.6E-18 8.7E-23 152.0 12.5 195 184-393 23-231 (239)
76 1jl5_A Outer protein YOPM; leu 99.8 9E-18 3.1E-22 162.5 16.5 156 121-297 90-247 (454)
77 2ast_B S-phase kinase-associat 99.7 1.2E-19 4.1E-24 168.9 0.5 222 144-377 70-308 (336)
78 1h6t_A Internalin B; cell adhe 99.7 6.7E-18 2.3E-22 153.9 11.9 173 169-354 43-216 (291)
79 1jl5_A Outer protein YOPM; leu 99.7 4.6E-17 1.6E-21 157.6 18.4 137 122-276 111-248 (454)
80 2ca6_A RAN GTPase-activating p 99.7 4.4E-19 1.5E-23 168.4 2.3 232 141-378 29-319 (386)
81 3g06_A SSPH2 (leucine-rich rep 99.7 2.2E-17 7.6E-22 165.0 14.2 230 123-393 41-289 (622)
82 1h6t_A Internalin B; cell adhe 99.7 6E-17 2.1E-21 147.6 14.2 189 176-379 28-217 (291)
83 1m9s_A Internalin B; cell inva 99.7 1.2E-17 4.1E-22 166.7 10.1 143 142-297 41-185 (605)
84 3m19_A Variable lymphocyte rec 99.7 1.5E-16 5.2E-21 141.7 16.4 174 172-353 14-194 (251)
85 1m9s_A Internalin B; cell inva 99.7 2.3E-17 7.8E-22 164.7 11.2 180 169-361 40-220 (605)
86 3m19_A Variable lymphocyte rec 99.7 2.9E-16 9.8E-21 139.9 16.4 147 172-322 35-188 (251)
87 2ast_B S-phase kinase-associat 99.7 2.1E-18 7.3E-23 160.3 -1.9 218 145-372 48-282 (336)
88 4g8a_A TOLL-like receptor 4; l 99.7 5.3E-16 1.8E-20 156.2 14.9 202 169-375 368-580 (635)
89 1xeu_A Internalin C; cellular 99.7 1.3E-16 4.6E-21 143.0 9.3 170 171-354 18-188 (263)
90 3cvr_A Invasion plasmid antige 99.7 1E-15 3.4E-20 151.4 15.4 159 172-356 80-248 (571)
91 4glp_A Monocyte differentiatio 99.7 8E-17 2.7E-21 148.1 6.3 197 142-352 89-308 (310)
92 3cvr_A Invasion plasmid antige 99.6 3.7E-16 1.3E-20 154.4 9.8 177 172-376 59-244 (571)
93 4ezg_A Putative uncharacterize 99.6 9.2E-16 3.1E-20 131.4 11.0 153 192-376 41-195 (197)
94 2ca6_A RAN GTPase-activating p 99.6 6.5E-17 2.2E-21 153.4 3.2 244 121-371 31-339 (386)
95 1xeu_A Internalin C; cellular 99.6 5.1E-16 1.7E-20 139.3 8.6 171 193-378 17-188 (263)
96 4ezg_A Putative uncharacterize 99.6 1.4E-15 4.7E-20 130.3 10.4 150 169-350 41-193 (197)
97 3goz_A Leucine-rich repeat-con 99.6 1.1E-16 3.9E-21 150.4 3.1 233 141-377 19-299 (362)
98 2o6s_A Variable lymphocyte rec 99.6 3.3E-15 1.1E-19 129.0 12.0 175 175-363 10-190 (208)
99 1z7x_W Ribonuclease inhibitor; 99.6 3.7E-17 1.3E-21 158.6 -0.7 85 142-226 26-121 (461)
100 4ay9_X Follicle-stimulating ho 99.6 4.7E-15 1.6E-19 138.6 13.1 209 147-371 12-232 (350)
101 3goz_A Leucine-rich repeat-con 99.6 2.8E-16 9.6E-21 147.7 4.5 227 122-352 22-298 (362)
102 4ay9_X Follicle-stimulating ho 99.6 7.3E-15 2.5E-19 137.4 13.2 227 129-371 16-255 (350)
103 1z7x_W Ribonuclease inhibitor; 99.6 3.9E-17 1.3E-21 158.5 -2.7 230 143-377 141-413 (461)
104 1dce_A Protein (RAB geranylger 99.6 1.6E-17 5.4E-22 164.8 -8.4 176 169-376 346-547 (567)
105 3ogk_B Coronatine-insensitive 99.6 2.8E-16 9.5E-21 157.3 -0.4 243 121-370 111-411 (592)
106 2a5y_B CED-4; apoptosis; HET: 99.6 1.1E-15 3.8E-20 151.4 3.8 96 5-110 360-473 (549)
107 3ogk_B Coronatine-insensitive 99.6 3.6E-16 1.2E-20 156.5 0.3 247 142-393 162-468 (592)
108 2v9t_B SLIT homolog 2 protein 99.6 4.2E-14 1.4E-18 123.2 13.4 119 175-297 14-138 (220)
109 2o6s_A Variable lymphocyte rec 99.5 4.6E-14 1.6E-18 121.7 11.8 166 198-378 10-181 (208)
110 2xot_A Amphoterin-induced prot 99.5 1.8E-14 6.2E-19 135.3 9.8 119 175-297 21-146 (361)
111 3e6j_A Variable lymphocyte rec 99.5 1.1E-13 3.6E-18 121.4 13.3 79 176-258 23-104 (229)
112 2v70_A SLIT-2, SLIT homolog 2 99.5 7.3E-14 2.5E-18 121.7 12.2 96 176-275 15-115 (220)
113 2xot_A Amphoterin-induced prot 99.5 1.8E-14 6E-19 135.3 8.8 166 147-323 21-199 (361)
114 4b8c_D Glucose-repressible alc 99.5 2.5E-15 8.5E-20 153.5 2.9 154 121-276 172-327 (727)
115 2v9t_B SLIT homolog 2 protein 99.5 1.2E-13 4.1E-18 120.3 12.2 147 198-352 14-166 (220)
116 2v70_A SLIT-2, SLIT homolog 2 99.5 1.2E-13 4.1E-18 120.3 12.1 149 197-353 13-168 (220)
117 3e6j_A Variable lymphocyte rec 99.5 2.3E-13 8E-18 119.2 13.8 149 197-354 21-175 (229)
118 2ell_A Acidic leucine-rich nuc 99.5 4.4E-14 1.5E-18 117.5 8.5 127 169-298 21-158 (168)
119 4b8c_D Glucose-repressible alc 99.5 8.7E-15 3E-19 149.5 3.5 190 143-348 172-369 (727)
120 2ell_A Acidic leucine-rich nuc 99.5 9.8E-14 3.4E-18 115.4 8.0 130 141-276 21-158 (168)
121 2p1m_B Transport inhibitor res 99.4 5.1E-16 1.7E-20 155.4 -8.1 244 121-370 104-405 (594)
122 2je0_A Acidic leucine-rich nuc 99.4 7E-14 2.4E-18 113.9 5.3 104 169-275 14-123 (149)
123 1a9n_A U2A', U2A'; complex (nu 99.4 1.7E-13 5.7E-18 115.0 6.6 126 169-298 16-151 (176)
124 1a9n_A U2A', U2A'; complex (nu 99.4 1.9E-13 6.5E-18 114.7 6.2 129 140-276 15-151 (176)
125 2je0_A Acidic leucine-rich nuc 99.4 1.1E-13 3.7E-18 112.7 4.3 126 142-273 15-148 (149)
126 2p1m_B Transport inhibitor res 99.4 8.2E-15 2.8E-19 146.6 -5.7 268 121-393 129-461 (594)
127 1w8a_A SLIT protein; signaling 99.4 1.8E-12 6.1E-17 110.3 9.5 120 175-298 11-137 (192)
128 2wfh_A SLIT homolog 2 protein 99.3 5.5E-12 1.9E-16 107.4 11.5 120 175-298 13-137 (193)
129 1dce_A Protein (RAB geranylger 99.3 1.7E-12 5.9E-17 128.6 9.1 150 165-320 402-567 (567)
130 1ds9_A Outer arm dynein; leuci 99.3 5.5E-14 1.9E-18 120.4 -3.2 109 186-298 39-151 (198)
131 1w8a_A SLIT protein; signaling 99.3 1.5E-11 5.3E-16 104.5 10.1 119 198-322 11-135 (192)
132 2wfh_A SLIT homolog 2 protein 99.3 4.8E-11 1.7E-15 101.5 12.0 118 198-322 13-135 (193)
133 1ds9_A Outer arm dynein; leuci 99.2 1.1E-13 3.9E-18 118.3 -5.7 126 164-293 40-180 (198)
134 2o6r_A Variable lymphocyte rec 99.2 1.1E-10 3.8E-15 97.7 12.3 120 175-298 10-135 (177)
135 2r9u_A Variable lymphocyte rec 99.2 1.6E-10 5.6E-15 96.4 10.3 98 175-276 15-116 (174)
136 2o6r_A Variable lymphocyte rec 99.1 3.2E-10 1.1E-14 94.9 11.6 124 220-352 9-138 (177)
137 3g39_A Variable lymphocyte rec 99.1 2E-10 6.7E-15 95.6 10.2 99 174-276 11-113 (170)
138 3sb4_A Hypothetical leucine ri 99.1 6.6E-11 2.3E-15 109.4 7.2 84 286-376 225-311 (329)
139 3sfz_A APAF-1, apoptotic pepti 99.1 4.1E-11 1.4E-15 129.8 6.4 91 6-108 362-452 (1249)
140 1vt4_I APAF-1 related killer D 99.1 3.6E-11 1.2E-15 123.2 4.7 85 5-102 352-437 (1221)
141 2r9u_A Variable lymphocyte rec 99.0 6.5E-10 2.2E-14 92.8 8.0 106 147-261 15-124 (174)
142 3sb4_A Hypothetical leucine ri 99.0 2.4E-10 8.3E-15 105.6 5.2 86 142-234 23-140 (329)
143 4fdw_A Leucine rich hypothetic 99.0 1.4E-08 4.9E-13 96.1 17.0 214 145-375 136-358 (401)
144 3g39_A Variable lymphocyte rec 98.9 4.7E-09 1.6E-13 87.1 9.7 99 196-298 10-113 (170)
145 4fdw_A Leucine rich hypothetic 98.9 2.8E-08 9.5E-13 94.2 16.1 232 123-373 136-381 (401)
146 1z6t_A APAF-1, apoptotic prote 98.8 3.1E-09 1.1E-13 106.2 6.6 88 6-105 362-449 (591)
147 2ifg_A High affinity nerve gro 98.8 1.4E-08 4.7E-13 94.4 9.8 95 178-275 14-113 (347)
148 2ifg_A High affinity nerve gro 98.7 4.9E-08 1.7E-12 90.6 8.5 89 163-254 23-115 (347)
149 3un9_A NLR family member X1; l 98.6 4.4E-09 1.5E-13 98.7 0.8 109 143-253 71-194 (372)
150 3un9_A NLR family member X1; l 98.5 3.4E-09 1.1E-13 99.5 -3.2 82 171-254 71-167 (372)
151 2ra8_A Uncharacterized protein 98.4 3E-08 1E-12 92.4 0.7 210 141-373 104-341 (362)
152 2ra8_A Uncharacterized protein 98.2 1.2E-06 4.1E-11 81.5 6.2 110 141-253 136-263 (362)
153 1io0_A Tropomodulin; LRR prote 98.0 6.1E-06 2.1E-10 69.2 5.4 111 141-253 33-162 (185)
154 4gt6_A Cell surface protein; l 98.0 0.00033 1.1E-08 65.9 17.4 83 283-373 284-368 (394)
155 1io0_A Tropomodulin; LRR prote 97.8 3.9E-06 1.3E-10 70.3 1.6 116 164-298 28-162 (185)
156 4fs7_A Uncharacterized protein 97.8 0.0001 3.6E-09 69.3 11.2 82 283-372 293-376 (394)
157 3e4g_A ATP synthase subunit S, 97.8 6.3E-06 2.2E-10 67.9 2.3 33 339-371 115-148 (176)
158 3rw6_A Nuclear RNA export fact 97.7 2.8E-05 9.5E-10 68.8 4.9 79 169-249 167-259 (267)
159 4fs7_A Uncharacterized protein 97.7 0.0003 1E-08 66.2 12.3 59 309-371 293-352 (394)
160 3e4g_A ATP synthase subunit S, 97.6 4.2E-05 1.4E-09 62.9 3.8 34 218-253 61-96 (176)
161 3rw6_A Nuclear RNA export fact 97.2 0.00018 6.3E-09 63.5 3.7 79 192-273 167-259 (267)
162 4h09_A Hypothetical leucine ri 97.2 0.015 5.3E-07 53.9 16.6 31 122-153 46-78 (379)
163 4gt6_A Cell surface protein; l 96.9 0.015 5.2E-07 54.4 13.9 126 237-373 261-389 (394)
164 4h09_A Hypothetical leucine ri 96.1 0.22 7.6E-06 45.9 16.6 59 308-370 258-318 (379)
165 3rfe_A Platelet glycoprotein I 95.3 0.019 6.7E-07 44.5 4.9 35 338-372 31-65 (130)
166 3rfe_A Platelet glycoprotein I 94.3 0.072 2.5E-06 41.2 5.7 49 176-226 12-63 (130)
167 1pgv_A TMD-1, tropomodulin TMD 94.0 0.062 2.1E-06 44.8 4.9 109 141-249 38-165 (197)
168 1pgv_A TMD-1, tropomodulin TMD 91.9 0.14 4.9E-06 42.6 4.1 86 163-249 32-134 (197)
169 3lqv_P Splicing factor 3B subu 22.3 26 0.0009 20.2 0.6 9 33-41 30-38 (39)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=4.1e-26 Score=212.01 Aligned_cols=225 Identities=17% Similarity=0.144 Sum_probs=197.2
Q ss_pred CCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCC
Q 037494 141 QSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNL 220 (394)
Q Consensus 141 ~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L 220 (394)
....+++.|.+.++... .++..+.++++|++|++++|.+..+|..++.+++|++|++++|.+..+|..++++++|
T Consensus 78 ~~~~~l~~L~L~~n~l~-----~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L 152 (328)
T 4fcg_A 78 ATQPGRVALELRSVPLP-----QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRL 152 (328)
T ss_dssp HTSTTCCEEEEESSCCS-----SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTC
T ss_pred ccccceeEEEccCCCch-----hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCC
Confidence 34578889999888776 4443337799999999999999999999999999999999999999999999999999
Q ss_pred cEEEcc-cCCccccchhhcc---------CccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccC-CCcchhcCCCCCC
Q 037494 221 ETLEMP-AGYIDHSPEGIWM---------MQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPS-SCTPDILSRLPTV 289 (394)
Q Consensus 221 ~~L~l~-~~~l~~lp~~i~~---------l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~-~~~~~~l~~l~~L 289 (394)
++|+++ |..+..+|..++. +++|++|+++ +|.+..+|..++.+++|++|++.++. ...+..++.+++|
T Consensus 153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~-~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L 231 (328)
T 4fcg_A 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE-WTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKL 231 (328)
T ss_dssp CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEE-EECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTC
T ss_pred CEEECCCCCCccccChhHhhccchhhhccCCCCCEEECc-CCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCC
Confidence 999999 8678888887665 9999999999 99988999999999999999999988 6677789999999
Q ss_pred CeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEE
Q 037494 290 QTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMK 368 (394)
Q Consensus 290 ~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~ 368 (394)
+.|++++|. ..+.+|..++.+++|+.|++++|+.+..+ | ++.. +++|+.|+|++|++....++.++++++|+.+.
T Consensus 232 ~~L~Ls~n~--~~~~~p~~~~~l~~L~~L~L~~n~~~~~~-p~~~~~-l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~ 307 (328)
T 4fcg_A 232 EELDLRGCT--ALRNYPPIFGGRAPLKRLILKDCSNLLTL-PLDIHR-LTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307 (328)
T ss_dssp CEEECTTCT--TCCBCCCCTTCCCCCCEEECTTCTTCCBC-CTTGGG-CTTCCEEECTTCTTCCCCCGGGGGSCTTCEEE
T ss_pred CEEECcCCc--chhhhHHHhcCCCCCCEEECCCCCchhhc-chhhhc-CCCCCEEeCCCCCchhhccHHHhhccCceEEe
Confidence 999999987 77788888999999999999997778888 8 8888 99999999999998888888899999999999
Q ss_pred Eeccccc
Q 037494 369 LKRNSYF 375 (394)
Q Consensus 369 l~~n~~~ 375 (394)
+..+.+.
T Consensus 308 l~~~~~~ 314 (328)
T 4fcg_A 308 VPPHLQA 314 (328)
T ss_dssp CCGGGSC
T ss_pred CCHHHHH
Confidence 9765443
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=3e-25 Score=206.21 Aligned_cols=202 Identities=21% Similarity=0.195 Sum_probs=183.1
Q ss_pred cCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEe
Q 037494 170 NFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNF 248 (394)
Q Consensus 170 ~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l 248 (394)
....+++|+++++.+..+|+.++++++|++|++++|.+..+|..++++++|++|+++ | .+..+|..++.+++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEEC
Confidence 468999999999999999999999999999999999999999999999999999999 8 88899999999999999999
Q ss_pred eCCCC-CCCCCCCCCC---------CCcCceeCccccC-CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcE
Q 037494 249 DSITL-PAPPKNYSSS---------LKNLIFISALHPS-SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLEC 317 (394)
Q Consensus 249 ~~~~~-~~~~p~~l~~---------l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~ 317 (394)
+ +|. ...+|..++. +++|++|++.++. ...+..++.+++|+.|++++|. ...+|..+..+++|+.
T Consensus 158 ~-~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~---l~~l~~~l~~l~~L~~ 233 (328)
T 4fcg_A 158 R-ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP---LSALGPAIHHLPKLEE 233 (328)
T ss_dssp E-EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC---CCCCCGGGGGCTTCCE
T ss_pred C-CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC---CCcCchhhccCCCCCE
Confidence 9 876 7888887765 9999999999998 7777889999999999999995 4467778999999999
Q ss_pred EEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccccCce
Q 037494 318 LKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRK 378 (394)
Q Consensus 318 L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 378 (394)
|++++|+....+ | ++.. +++|+.|+|++|++....+..++.+++|++|++++|.+.+..
T Consensus 234 L~Ls~n~~~~~~-p~~~~~-l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i 293 (328)
T 4fcg_A 234 LDLRGCTALRNY-PPIFGG-RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293 (328)
T ss_dssp EECTTCTTCCBC-CCCTTC-CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred EECcCCcchhhh-HHHhcC-CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc
Confidence 999997777777 8 8988 999999999999887777778999999999999998877654
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=8.3e-25 Score=201.95 Aligned_cols=238 Identities=16% Similarity=0.200 Sum_probs=149.4
Q ss_pred CCccEEEEecCCCccchhcchhHHhccCCceeEEEcCC-CCCC-CCcccccCcccccEEecCCCCCc-cccccccCCCCC
Q 037494 144 MYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGS-AVLD-QFPPGLENLFLLKYLQLNIPTLK-CLPLLICTLLNL 220 (394)
Q Consensus 144 ~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~-~~~~-~lp~~i~~l~~L~~L~l~~~~l~-~lp~~l~~l~~L 220 (394)
.+++.|.+.++.... ...++..+.++++|++|++++ +.+. .+|..++++++|++|++++|.+. .+|..++++++|
T Consensus 50 ~~l~~L~L~~~~l~~--~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPK--PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSS--CEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccC--CcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 456666666665531 002233336777777777774 5554 56666777777777777777766 566667777777
Q ss_pred cEEEcc-cCCcc-ccchhhccCccCcEEEeeCCCCCC-CCCCCCCCCC-cCceeCccccC--CCcchhcCCCCCCCeEEE
Q 037494 221 ETLEMP-AGYID-HSPEGIWMMQKLMHLNFDSITLPA-PPKNYSSSLK-NLIFISALHPS--SCTPDILSRLPTVQTLRI 294 (394)
Q Consensus 221 ~~L~l~-~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~-~~p~~l~~l~-~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l 294 (394)
++|+++ | .+. .+|..++.+++|++|+++ +|.+. .+|..++.++ +|+.|++.++. ...+..++.++ |+.|++
T Consensus 128 ~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~-~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~L 204 (313)
T 1ogq_A 128 VTLDFSYN-ALSGTLPPSISSLPNLVGITFD-GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDL 204 (313)
T ss_dssp CEEECCSS-EEESCCCGGGGGCTTCCEEECC-SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEEC
T ss_pred CEEeCCCC-ccCCcCChHHhcCCCCCeEECc-CCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEEC
Confidence 777777 6 554 566667777777777777 66644 5666666666 67777776666 35556666665 777777
Q ss_pred eecCCccccchhhhhcCCCCCcEEEecCCCCCCccCCCCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccc
Q 037494 295 SGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSY 374 (394)
Q Consensus 295 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~ 374 (394)
++|. .....+..+..+++|+.|++++ +.+....|.+.. +++|++|++++|++....+..++.+++|++|++++|.+
T Consensus 205 s~N~--l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~-l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 205 SRNM--LEGDASVLFGSDKNTQKIHLAK-NSLAFDLGKVGL-SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp CSSE--EEECCGGGCCTTSCCSEEECCS-SEECCBGGGCCC-CTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred cCCc--ccCcCCHHHhcCCCCCEEECCC-CceeeecCcccc-cCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence 7765 4445566666777777777766 444433024455 67777777777776555556667777777777777766
Q ss_pred cCceeEEeCCCCCcCCccc
Q 037494 375 FGRKLACVGSGGFPELQVL 393 (394)
Q Consensus 375 ~~~~~~~~~~~~fp~L~~L 393 (394)
++.... .+.+++|+.|
T Consensus 281 ~~~ip~---~~~l~~L~~l 296 (313)
T 1ogq_A 281 CGEIPQ---GGNLQRFDVS 296 (313)
T ss_dssp EEECCC---STTGGGSCGG
T ss_pred cccCCC---CccccccChH
Confidence 543311 1345555544
No 4
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=2.6e-23 Score=197.86 Aligned_cols=253 Identities=18% Similarity=0.174 Sum_probs=191.8
Q ss_pred CCceEEEEEEeCCcchhhcc--CCCCCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCCc-ccccCccc
Q 037494 121 LATVKRCFILEDLIEFISLE--QSDMYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQFP-PGLENLFL 196 (394)
Q Consensus 121 ~~~~r~L~l~~~~~~~~~~~--~~~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~ 196 (394)
..+++++.+..+....++.. ..+++|+.|.+.++... .+ +..|..+++|++|++++|.+..++ ..++.+++
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-----EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-----EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-----ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence 46788888886666666654 56888999999888775 23 334488899999999999888665 55788899
Q ss_pred ccEEecCCCCCccccccc-cCCCCCcEEEcc-cCCccccch-hhccCccCcEEEeeCCCCCCCCCCCCCCCC--------
Q 037494 197 LKYLQLNIPTLKCLPLLI-CTLLNLETLEMP-AGYIDHSPE-GIWMMQKLMHLNFDSITLPAPPKNYSSSLK-------- 265 (394)
Q Consensus 197 L~~L~l~~~~l~~lp~~l-~~l~~L~~L~l~-~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~-------- 265 (394)
|++|++++|.++.+|..+ +++++|++|+++ | .+..+++ .++.+++|++|+++ +|.+..++ ++.++
T Consensus 119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~--~~~l~~L~~L~l~ 194 (390)
T 3o6n_A 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLS-SNRLTHVD--LSLIPSLFHANVS 194 (390)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECC-SSCCSBCC--GGGCTTCSEEECC
T ss_pred CCEEECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECC-CCcCCccc--cccccccceeecc
Confidence 999999999888888774 788899999999 7 7777654 57888889999888 87755443 12222
Q ss_pred --------------------------------cCceeCccccCCCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCC
Q 037494 266 --------------------------------NLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELH 313 (394)
Q Consensus 266 --------------------------------~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~ 313 (394)
+|+.|++.++.......++.+++|+.|++++|. .....+..+..++
T Consensus 195 ~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~ 272 (390)
T 3o6n_A 195 YNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE--LEKIMYHPFVKMQ 272 (390)
T ss_dssp SSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC--CCEEESGGGTTCS
T ss_pred cccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCc--CCCcChhHccccc
Confidence 345555555552334567778889999998886 5555677888899
Q ss_pred CCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccccCceeEEeCCCCCcCCcc
Q 037494 314 KLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQV 392 (394)
Q Consensus 314 ~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~fp~L~~ 392 (394)
+|+.|++++ +.+..+ | .+.. +++|+.|++++|++.. .++.++.+++|+.|++++|.+.... ...+++|+.
T Consensus 273 ~L~~L~L~~-n~l~~~-~~~~~~-l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~~-----~~~~~~L~~ 343 (390)
T 3o6n_A 273 RLERLYISN-NRLVAL-NLYGQP-IPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLK-----LSTHHTLKN 343 (390)
T ss_dssp SCCEEECCS-SCCCEE-ECSSSC-CTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCC-----CCTTCCCSE
T ss_pred cCCEEECCC-CcCccc-CcccCC-CCCCCEEECCCCccee-cCccccccCcCCEEECCCCccceeC-----chhhccCCE
Confidence 999999988 678877 7 6777 8999999999999864 3455778899999999999887654 457888877
Q ss_pred c
Q 037494 393 L 393 (394)
Q Consensus 393 L 393 (394)
|
T Consensus 344 L 344 (390)
T 3o6n_A 344 L 344 (390)
T ss_dssp E
T ss_pred E
Confidence 6
No 5
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=6.4e-23 Score=199.04 Aligned_cols=130 Identities=17% Similarity=0.081 Sum_probs=96.2
Q ss_pred CCceEEEEEEeCCcchhhc--cCCCCCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCC-cccccCccc
Q 037494 121 LATVKRCFILEDLIEFISL--EQSDMYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQF-PPGLENLFL 196 (394)
Q Consensus 121 ~~~~r~L~l~~~~~~~~~~--~~~~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~ 196 (394)
+..+++|.+..+....++. ...+++|+.|.+.++.... .+ +..|.++++|++|++++|.+..+ |..++++++
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~----~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 104 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGL----VIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN 104 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTC----EECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTT
T ss_pred CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccc----eECcccccccccCCEEeCCCCccCccChhhccCccc
Confidence 4678888888666665533 2678888888888886642 22 34448888888888888888755 677888888
Q ss_pred ccEEecCCCCCcc-cccc--ccCCCCCcEEEcc-cCCcccc-chh-hccCccCcEEEeeCCCCCCC
Q 037494 197 LKYLQLNIPTLKC-LPLL--ICTLLNLETLEMP-AGYIDHS-PEG-IWMMQKLMHLNFDSITLPAP 256 (394)
Q Consensus 197 L~~L~l~~~~l~~-lp~~--l~~l~~L~~L~l~-~~~l~~l-p~~-i~~l~~L~~L~l~~~~~~~~ 256 (394)
|++|++++|.+.. .|.. ++.+++|++|+++ | .+..+ |.. ++.+++|++|+++ +|.+..
T Consensus 105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~-~n~l~~ 168 (455)
T 3v47_A 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLT-FNKVKS 168 (455)
T ss_dssp CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECT-TCCBSC
T ss_pred CCEEeCCCCCCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCC-CCcccc
Confidence 8888888888874 4444 7788888888888 7 66666 444 7788888888888 776443
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=1.2e-22 Score=190.10 Aligned_cols=253 Identities=16% Similarity=0.164 Sum_probs=152.6
Q ss_pred CCceEEEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEE
Q 037494 121 LATVKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYL 200 (394)
Q Consensus 121 ~~~~r~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 200 (394)
...+++|.+..+....++....+++|++|.+.++... .++.+ ..+++|++|++++|.+..++. +..+++|++|
T Consensus 65 ~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~-----~~~~~-~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L 137 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKIT-----DISAL-QNLTNLRELYLNEDNISDISP-LANLTKMYSL 137 (347)
T ss_dssp CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC-----CCGGG-TTCTTCSEEECTTSCCCCCGG-GTTCTTCCEE
T ss_pred cCCccEEEccCCccccchhhhcCCcCCEEEccCCccc-----CchHH-cCCCcCCEEECcCCcccCchh-hccCCceeEE
Confidence 4567777777555555555566777777777776654 23444 677777777777777666655 6666666666
Q ss_pred ecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCC--------------------
Q 037494 201 QLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKN-------------------- 259 (394)
Q Consensus 201 ~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~-------------------- 259 (394)
++++|.....++.++.+++|++|+++ | .+..++. +..+++|++|+++ +|....++.
T Consensus 138 ~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~-~~~l~~L~~L~l~-~n~l~~~~~~~~l~~L~~L~l~~n~l~~~ 214 (347)
T 4fmz_A 138 NLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP-IANLTDLYSLSLN-YNQIEDISPLASLTSLHYFTAYVNQITDI 214 (347)
T ss_dssp ECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG-GGGCTTCSEEECT-TSCCCCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred ECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh-hccCCCCCEEEcc-CCcccccccccCCCccceeecccCCCCCC
Confidence 66666333223345556666666665 5 4444443 5555555555555 555444332
Q ss_pred -CCCCCCcCceeCccccCCCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCCCCCCCCC
Q 037494 260 -YSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPP 338 (394)
Q Consensus 260 -~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p~~~~~l~ 338 (394)
.++.+++|++|++.++.......+..+++|+.|++++|. .. .+ ..+..+++|+.|++++ +.+..+ |.+.. ++
T Consensus 215 ~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~--l~-~~-~~~~~l~~L~~L~l~~-n~l~~~-~~~~~-l~ 287 (347)
T 4fmz_A 215 TPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQ--IS-DI-NAVKDLTKLKMLNVGS-NQISDI-SVLNN-LS 287 (347)
T ss_dssp GGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC--CC-CC-GGGTTCTTCCEEECCS-SCCCCC-GGGGG-CT
T ss_pred chhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCc--cC-CC-hhHhcCCCcCEEEccC-CccCCC-hhhcC-CC
Confidence 144455555555555551112225566666666666654 11 12 2455666666666666 345554 44555 78
Q ss_pred CceEEEEecccCCCCCcccccCCCCCCeEEEecccccCceeEEeCCCCCcCCcccC
Q 037494 339 SLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQVLT 394 (394)
Q Consensus 339 ~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~fp~L~~L~ 394 (394)
+|+.|++++|++....+..++.+++|+.|++++|.+.+... ...+++|+.|+
T Consensus 288 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~ 339 (347)
T 4fmz_A 288 QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP----LASLSKMDSAD 339 (347)
T ss_dssp TCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG----GGGCTTCSEES
T ss_pred CCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC----hhhhhccceee
Confidence 88888888888776666777888888888888888776543 24577777764
No 7
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=1.1e-22 Score=190.44 Aligned_cols=237 Identities=16% Similarity=0.180 Sum_probs=172.5
Q ss_pred CCceEEEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEE
Q 037494 121 LATVKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYL 200 (394)
Q Consensus 121 ~~~~r~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 200 (394)
...++++.+.++....++....+++|+.|.+.++... .++.+ ..+++|++|++++|.+..++ .+..+++|++|
T Consensus 43 l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~-----~~~~~-~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQIT-----DISPL-SNLVKLTNLYIGTNKITDIS-ALQNLTNLREL 115 (347)
T ss_dssp HTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC-----CCGGG-TTCTTCCEEECCSSCCCCCG-GGTTCTTCSEE
T ss_pred cccccEEEEeCCccccchhhhhcCCccEEEccCCccc-----cchhh-hcCCcCCEEEccCCcccCch-HHcCCCcCCEE
Confidence 5678889988777777766678999999999999876 34444 99999999999999999876 59999999999
Q ss_pred ecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccCCCc
Q 037494 201 QLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPSSCT 279 (394)
Q Consensus 201 ~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~ 279 (394)
++++|.+..+|. +..+++|++|+++ |..+..+ ..+..+++|++|+++ +|....++. ++.+++|+.|++.++....
T Consensus 116 ~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~-~~~~~~~~~-~~~l~~L~~L~l~~n~l~~ 191 (347)
T 4fmz_A 116 YLNEDNISDISP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVT-ESKVKDVTP-IANLTDLYSLSLNYNQIED 191 (347)
T ss_dssp ECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECC-SSCCCCCGG-GGGCTTCSEEECTTSCCCC
T ss_pred ECcCCcccCchh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEec-CCCcCCchh-hccCCCCCEEEccCCcccc
Confidence 999999999886 8999999999999 8455554 458999999999999 998777665 8889999999999887222
Q ss_pred chhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCC---------------------CCCCccCCCCCCCCC
Q 037494 280 PDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNG---------------------SKLSRMVLSEYQFPP 338 (394)
Q Consensus 280 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~---------------------~~L~~L~p~~~~~l~ 338 (394)
...+..+++|+.|+++++. ... .+. +..+++|+.|+++++ +.+..+ +.+.. ++
T Consensus 192 ~~~~~~l~~L~~L~l~~n~--l~~-~~~-~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~-l~ 265 (347)
T 4fmz_A 192 ISPLASLTSLHYFTAYVNQ--ITD-ITP-VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI-NAVKD-LT 265 (347)
T ss_dssp CGGGGGCTTCCEEECCSSC--CCC-CGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC-GGGTT-CT
T ss_pred cccccCCCccceeecccCC--CCC-Cch-hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCC-hhHhc-CC
Confidence 3336666677777776664 221 111 455566666666552 222222 23344 56
Q ss_pred CceEEEEecccCCCCCcccccCCCCCCeEEEecccccC
Q 037494 339 SLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFG 376 (394)
Q Consensus 339 ~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 376 (394)
+|+.|++++|++.. .+.+..+++|+.|++++|.+.+
T Consensus 266 ~L~~L~l~~n~l~~--~~~~~~l~~L~~L~L~~n~l~~ 301 (347)
T 4fmz_A 266 KLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGN 301 (347)
T ss_dssp TCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCG
T ss_pred CcCEEEccCCccCC--ChhhcCCCCCCEEECcCCcCCC
Confidence 66666666666533 2445666666666666665543
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=1.1e-23 Score=194.48 Aligned_cols=238 Identities=16% Similarity=0.111 Sum_probs=201.0
Q ss_pred CceEEEEEEeCCcch---hhcc-CCCCCccEEEEec-CCCccchhcchhHHhccCCceeEEEcCCCCCC-CCcccccCcc
Q 037494 122 ATVKRCFILEDLIEF---ISLE-QSDMYLQSFLNHS-SESDHLALIDCENFCENFKYLRVLNWGSAVLD-QFPPGLENLF 195 (394)
Q Consensus 122 ~~~r~L~l~~~~~~~---~~~~-~~~~~lr~L~l~~-~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~ 195 (394)
.++++|.+..+.... ++.. ..+++|++|.+.+ +.... .++..|.++++|++|++++|.+. .+|..++.++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG----PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES----CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccc----cCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence 579999999666653 4443 7899999999995 65542 34544599999999999999998 8899999999
Q ss_pred cccEEecCCCCCc-cccccccCCCCCcEEEcc-cCCcc-ccchhhccCc-cCcEEEeeCCCCCC-CCCCCCCCCCcCcee
Q 037494 196 LLKYLQLNIPTLK-CLPLLICTLLNLETLEMP-AGYID-HSPEGIWMMQ-KLMHLNFDSITLPA-PPKNYSSSLKNLIFI 270 (394)
Q Consensus 196 ~L~~L~l~~~~l~-~lp~~l~~l~~L~~L~l~-~~~l~-~lp~~i~~l~-~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L 270 (394)
+|++|++++|.+. .+|..++.+++|++|+++ | .+. .+|..++.++ +|++|+++ +|.+. .+|..++.++ |+.|
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~~L~~L~L~-~N~l~~~~~~~~~~l~-L~~L 202 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGAIPDSYGSFSKLFTSMTIS-RNRLTGKIPPTFANLN-LAFV 202 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS-CCEEECCGGGGCCCTTCCEEECC-SSEEEEECCGGGGGCC-CSEE
T ss_pred CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC-cccCcCCHHHhhhhhcCcEEECc-CCeeeccCChHHhCCc-ccEE
Confidence 9999999999998 789999999999999999 8 776 8899999998 99999999 98844 7788888887 9999
Q ss_pred CccccC--CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCC-ccCC-CCCCCCCCceEEEEe
Q 037494 271 SALHPS--SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLS-RMVL-SEYQFPPSLIQLSLS 346 (394)
Q Consensus 271 ~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~-~L~p-~~~~~l~~L~~L~L~ 346 (394)
++.++. ...+..++.+++|+.|++++|. .....+ .+..+++|+.|++++ +.+. .+ | ++.. +++|+.|+++
T Consensus 203 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~--l~~~~~-~~~~l~~L~~L~Ls~-N~l~~~~-p~~l~~-l~~L~~L~Ls 276 (313)
T 1ogq_A 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNS--LAFDLG-KVGLSKNLNGLDLRN-NRIYGTL-PQGLTQ-LKFLHSLNVS 276 (313)
T ss_dssp ECCSSEEEECCGGGCCTTSCCSEEECCSSE--ECCBGG-GCCCCTTCCEEECCS-SCCEECC-CGGGGG-CTTCCEEECC
T ss_pred ECcCCcccCcCCHHHhcCCCCCEEECCCCc--eeeecC-cccccCCCCEEECcC-CcccCcC-ChHHhc-CcCCCEEECc
Confidence 999988 5677889999999999999996 443444 478899999999998 5666 55 8 8888 9999999999
Q ss_pred cccCCCCCcccccCCCCCCeEEEeccc
Q 037494 347 NTELMEDPMPMLERLPRLQVMKLKRNS 373 (394)
Q Consensus 347 ~~~l~~~~~~~l~~l~~L~~L~l~~n~ 373 (394)
+|++.... |..+.+++|+.|++++|.
T Consensus 277 ~N~l~~~i-p~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 277 FNNLCGEI-PQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp SSEEEEEC-CCSTTGGGSCGGGTCSSS
T ss_pred CCcccccC-CCCccccccChHHhcCCC
Confidence 99986544 445889999999998886
No 9
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=3.1e-22 Score=186.10 Aligned_cols=241 Identities=13% Similarity=0.017 Sum_probs=187.5
Q ss_pred CCceEEEEEEeCCcchhhc--cCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCccccc
Q 037494 121 LATVKRCFILEDLIEFISL--EQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLK 198 (394)
Q Consensus 121 ~~~~r~L~l~~~~~~~~~~--~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~ 198 (394)
+..++.|.+..+....++. ...+++|++|.+.++.... ..+..|..+++|++|++++|.++.+|..+. ++|+
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~ 124 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK----ISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQ 124 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCC----BCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCC
T ss_pred CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCe----eCHHHhcCCCCCCEEECCCCcCCccChhhc--cccc
Confidence 4567788887666666654 2678888888888887752 114444888888888888888888887665 6888
Q ss_pred EEecCCCCCccccc-cccCCCCCcEEEcc-cCCcc---ccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCcc
Q 037494 199 YLQLNIPTLKCLPL-LICTLLNLETLEMP-AGYID---HSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISAL 273 (394)
Q Consensus 199 ~L~l~~~~l~~lp~-~l~~l~~L~~L~l~-~~~l~---~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~ 273 (394)
+|++++|.+..++. .++++++|++|+++ | .+. ..|..+..+++|++|+++ +|.+..+|..+. ++|++|++.
T Consensus 125 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~-~n~l~~l~~~~~--~~L~~L~l~ 200 (330)
T 1xku_A 125 ELRVHENEITKVRKSVFNGLNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIA-DTNITTIPQGLP--PSLTELHLD 200 (330)
T ss_dssp EEECCSSCCCBBCHHHHTTCTTCCEEECCSS-CCCGGGBCTTGGGGCTTCCEEECC-SSCCCSCCSSCC--TTCSEEECT
T ss_pred EEECCCCcccccCHhHhcCCccccEEECCCC-cCCccCcChhhccCCCCcCEEECC-CCccccCCcccc--ccCCEEECC
Confidence 88888888887764 47888999999998 7 554 345678889999999999 888888887654 789999998
Q ss_pred ccC--CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccC
Q 037494 274 HPS--SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTEL 350 (394)
Q Consensus 274 ~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l 350 (394)
++. ...+..++.+++|+.|++++|. .....+..+..+++|+.|++++ +.+..+ | ++.. +++|+.|++++|++
T Consensus 201 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~-N~l~~l-p~~l~~-l~~L~~L~l~~N~i 275 (330)
T 1xku_A 201 GNKITKVDAASLKGLNNLAKLGLSFNS--ISAVDNGSLANTPHLRELHLNN-NKLVKV-PGGLAD-HKYIQVVYLHNNNI 275 (330)
T ss_dssp TSCCCEECTGGGTTCTTCCEEECCSSC--CCEECTTTGGGSTTCCEEECCS-SCCSSC-CTTTTT-CSSCCEEECCSSCC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCc--CceeChhhccCCCCCCEEECCC-CcCccC-Chhhcc-CCCcCEEECCCCcC
Confidence 887 3345778899999999999986 4444455788889999999998 678888 8 8888 89999999999998
Q ss_pred CCCCcccccC------CCCCCeEEEecccccC
Q 037494 351 MEDPMPMLER------LPRLQVMKLKRNSYFG 376 (394)
Q Consensus 351 ~~~~~~~l~~------l~~L~~L~l~~n~~~~ 376 (394)
+..+...+.. .+.|+.|++++|.+..
T Consensus 276 ~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 276 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp CCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred CccChhhcCCcccccccccccceEeecCcccc
Confidence 7766655543 4788999998887654
No 10
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=5e-23 Score=189.32 Aligned_cols=232 Identities=17% Similarity=0.162 Sum_probs=190.8
Q ss_pred CcchhhccCCCCCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCC---cccccCcccccEEecCCCCCc
Q 037494 133 LIEFISLEQSDMYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQF---PPGLENLFLLKYLQLNIPTLK 208 (394)
Q Consensus 133 ~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~l---p~~i~~l~~L~~L~l~~~~l~ 208 (394)
....+|.. -.++++.|.+.++... .+ +.+|.++++|++|++++|.+..+ |..+..+++|++|++++|.+.
T Consensus 18 ~l~~ip~~-~~~~l~~L~L~~n~l~-----~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~ 91 (306)
T 2z66_A 18 GLTSVPTG-IPSSATRLELESNKLQ-----SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 91 (306)
T ss_dssp CCSSCCSC-CCTTCCEEECCSSCCC-----CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE
T ss_pred CcccCCCC-CCCCCCEEECCCCccC-----ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc
Confidence 33444443 3468999999988776 34 44458999999999999998754 567778999999999999999
Q ss_pred cccccccCCCCCcEEEcc-cCCccccch--hhccCccCcEEEeeCCCCCCC-CCCCCCCCCcCceeCccccC-C--Ccch
Q 037494 209 CLPLLICTLLNLETLEMP-AGYIDHSPE--GIWMMQKLMHLNFDSITLPAP-PKNYSSSLKNLIFISALHPS-S--CTPD 281 (394)
Q Consensus 209 ~lp~~l~~l~~L~~L~l~-~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~-~p~~l~~l~~L~~L~~~~~~-~--~~~~ 281 (394)
.+|..+..+++|++|+++ | .+..++. .+..+++|++|+++ +|.... .|..++.+++|++|++.++. . ..+.
T Consensus 92 ~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 169 (306)
T 2z66_A 92 TMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDIS-HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169 (306)
T ss_dssp EEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECT-TSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred cChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECC-CCcCCccchhhcccCcCCCEEECCCCccccccchh
Confidence 999889999999999999 8 8888774 68899999999999 888544 45568899999999999887 2 3677
Q ss_pred hcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccC
Q 037494 282 ILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLER 360 (394)
Q Consensus 282 ~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~ 360 (394)
.+..+++|+.|++++|. .....+..+..+++|+.|++++ +.+..+.+ .+.. +++|+.|++++|++....+..+..
T Consensus 170 ~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~ 245 (306)
T 2z66_A 170 IFTELRNLTFLDLSQCQ--LEQLSPTAFNSLSSLQVLNMSH-NNFFSLDTFPYKC-LNSLQVLDYSLNHIMTSKKQELQH 245 (306)
T ss_dssp CCTTCTTCCEEECTTSC--CCEECTTTTTTCTTCCEEECTT-SCCSBCCSGGGTT-CTTCCEEECTTSCCCBCSSSSCCC
T ss_pred HHhhCcCCCEEECCCCC--cCCcCHHHhcCCCCCCEEECCC-CccCccChhhccC-cccCCEeECCCCCCcccCHHHHHh
Confidence 88999999999999996 5555577888999999999998 66777733 6777 899999999999998877778888
Q ss_pred CC-CCCeEEEecccccC
Q 037494 361 LP-RLQVMKLKRNSYFG 376 (394)
Q Consensus 361 l~-~L~~L~l~~n~~~~ 376 (394)
++ +|+.|++++|.+..
T Consensus 246 ~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 246 FPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CCTTCCEEECTTCCEEC
T ss_pred hhccCCEEEccCCCeec
Confidence 85 89999999887754
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=7.5e-23 Score=205.31 Aligned_cols=254 Identities=18% Similarity=0.161 Sum_probs=182.9
Q ss_pred CCceEEEEEEeCCcchhhcc--CCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCc-ccccCcccc
Q 037494 121 LATVKRCFILEDLIEFISLE--QSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFP-PGLENLFLL 197 (394)
Q Consensus 121 ~~~~r~L~l~~~~~~~~~~~--~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L 197 (394)
...++.+.+..+....+|.. ..+++|++|.+.++.... ..+..|..+++|++|++++|.+..+| ..++.+++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE----IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCC----CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 34566777765555555543 567778888887777652 11323477888888888888877665 445778888
Q ss_pred cEEecCCCCCccccccc-cCCCCCcEEEcc-cCCccccch-hhccCccCcEEEeeCCCCCCCCCCCCCCCC---------
Q 037494 198 KYLQLNIPTLKCLPLLI-CTLLNLETLEMP-AGYIDHSPE-GIWMMQKLMHLNFDSITLPAPPKNYSSSLK--------- 265 (394)
Q Consensus 198 ~~L~l~~~~l~~lp~~l-~~l~~L~~L~l~-~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~--------- 265 (394)
++|++++|.+..+|+.+ +++++|++|+++ | .+..+|+ .++.+++|++|+++ +|.+..++. +.++
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~-~N~l~~~~~--~~l~~L~~L~l~~ 201 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLS-SNRLTHVDL--SLIPSLFHANVSY 201 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECT-TSCCSBCCG--GGCTTCSEEECCS
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECc-CCCCCCcCh--hhhhhhhhhhccc
Confidence 88888888887777664 778888888888 7 6666554 57777888888887 776544431 1222
Q ss_pred -------------------------------cCceeCccccCCCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCC
Q 037494 266 -------------------------------NLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHK 314 (394)
Q Consensus 266 -------------------------------~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~ 314 (394)
+|+.|.+.++....+..++.+++|+.|++++|. .....|..++.+++
T Consensus 202 n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~ 279 (597)
T 3oja_B 202 NLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE--LEKIMYHPFVKMQR 279 (597)
T ss_dssp SCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC--CCEEESGGGTTCSS
T ss_pred CccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCc--cCCCCHHHhcCccC
Confidence 345555555553334667888899999999987 66666788889999
Q ss_pred CcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccccCceeEEeCCCCCcCCccc
Q 037494 315 LECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQVL 393 (394)
Q Consensus 315 L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~fp~L~~L 393 (394)
|+.|+|++ +.+..+ | .+.. +++|+.|+|++|.+.. .++.++.+++|+.|++++|.+.+.. ...+++|+.|
T Consensus 280 L~~L~Ls~-N~l~~l-~~~~~~-l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~~-----~~~~~~L~~L 350 (597)
T 3oja_B 280 LERLYISN-NRLVAL-NLYGQP-IPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLK-----LSTHHTLKNL 350 (597)
T ss_dssp CCEEECTT-SCCCEE-ECSSSC-CTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCC-----CCTTCCCSEE
T ss_pred CCEEECCC-CCCCCC-Cccccc-CCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCCCcC-----hhhcCCCCEE
Confidence 99999998 778888 7 7777 8999999999999863 4456788999999999999887654 5678888776
No 12
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=1.4e-22 Score=197.89 Aligned_cols=263 Identities=17% Similarity=0.090 Sum_probs=155.7
Q ss_pred CCceEEEEEEeCCcchhhc--cCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcc-cccCcccc
Q 037494 121 LATVKRCFILEDLIEFISL--EQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPP-GLENLFLL 197 (394)
Q Consensus 121 ~~~~r~L~l~~~~~~~~~~--~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L 197 (394)
+..++.|.+..+....++. ...+++|+.|.+.++.... ..+..|.++++|++|++++|.+..+|. .++++++|
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 106 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA----VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNL 106 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTC
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCE----eChhhhhCCccCCEEECCCCcCCccCcccccCCCCC
Confidence 4456677776555555432 2566777777777766542 113333667777777777777666653 35667777
Q ss_pred cEEecCCCCCccc-cccccCCCCCcEEEcc-cCCccccc-hhhccCccCcEEEeeCCCCCCCCCCC-CCCCCcCceeCcc
Q 037494 198 KYLQLNIPTLKCL-PLLICTLLNLETLEMP-AGYIDHSP-EGIWMMQKLMHLNFDSITLPAPPKNY-SSSLKNLIFISAL 273 (394)
Q Consensus 198 ~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~-~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~~~ 273 (394)
++|++++|.+..+ |..+.++++|++|+++ | .+..++ ..+..+++|++|+++ +|.+..+|.. ++.+++|+.|++.
T Consensus 107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~l~~l~~L~~L~l~ 184 (477)
T 2id5_A 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLE-KCNLTSIPTEALSHLHGLIVLRLR 184 (477)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEE-SCCCSSCCHHHHTTCTTCCEEEEE
T ss_pred CEEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECC-CCcCcccChhHhcccCCCcEEeCC
Confidence 7777777766654 3445666666666666 5 554443 345566666666666 6655554432 4555555555555
Q ss_pred ccC--CCcchhcCCCCCCCeEEEeecCC---------------------ccccchh-hhhcCCCCCcEEEecCCCCCCcc
Q 037494 274 HPS--SCTPDILSRLPTVQTLRISGDLS---------------------HYHSGVS-KSLCELHKLECLKLVNGSKLSRM 329 (394)
Q Consensus 274 ~~~--~~~~~~l~~l~~L~~L~l~~~~~---------------------~~~~~~~-~~l~~~~~L~~L~l~~~~~L~~L 329 (394)
++. ......+..+++|+.|+++++.. .....++ ..+..+++|+.|++++ +.+..+
T Consensus 185 ~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~ 263 (477)
T 2id5_A 185 HLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSY-NPISTI 263 (477)
T ss_dssp SCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCS-SCCCEE
T ss_pred CCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCC-CcCCcc
Confidence 544 11122344444444444444320 0122233 4566677777777776 456666
Q ss_pred CC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccccCceeEEeCCCCCcCCccc
Q 037494 330 VL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQVL 393 (394)
Q Consensus 330 ~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~fp~L~~L 393 (394)
.+ .+.. +++|+.|+|++|++....+..+..+++|+.|++++|.+....... ...+++|+.|
T Consensus 264 ~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L 325 (477)
T 2id5_A 264 EGSMLHE-LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESV--FHSVGNLETL 325 (477)
T ss_dssp CTTSCTT-CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGG--BSCGGGCCEE
T ss_pred Chhhccc-cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhH--cCCCcccCEE
Confidence 23 6777 888888888888887666677888888888888888776543111 1245566654
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.88 E-value=1.6e-23 Score=211.53 Aligned_cols=210 Identities=17% Similarity=0.173 Sum_probs=125.8
Q ss_pred CceeEEEcCCCCCCCCcc--cccCcccccEEecCCCCCc-cccccccCCCCCcEEEcc-cCCccccchhhccCcc-CcEE
Q 037494 172 KYLRVLNWGSAVLDQFPP--GLENLFLLKYLQLNIPTLK-CLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQK-LMHL 246 (394)
Q Consensus 172 ~~L~~L~l~~~~~~~lp~--~i~~l~~L~~L~l~~~~l~-~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~-L~~L 246 (394)
++|++|++++|.++.+|. .++.+++|++|++++|.+. .+| .++.+++|++|+++ | .+..+|..++.+++ |++|
T Consensus 305 ~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L 382 (636)
T 4eco_A 305 EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENL 382 (636)
T ss_dssp GTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSS-EEEECCTTSEEECTTCCEE
T ss_pred CCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCC-ccccccHhhhhhcccCcEE
Confidence 445555555555444554 4555555555555555555 455 55555555555555 4 45555555566666 6666
Q ss_pred EeeCCCCCCCCCCCCCCCC--cCceeCccccC--CCcchhcC-------CCCCCCeEEEeecCCccccchhhh-hcCCCC
Q 037494 247 NFDSITLPAPPKNYSSSLK--NLIFISALHPS--SCTPDILS-------RLPTVQTLRISGDLSHYHSGVSKS-LCELHK 314 (394)
Q Consensus 247 ~l~~~~~~~~~p~~l~~l~--~L~~L~~~~~~--~~~~~~l~-------~l~~L~~L~l~~~~~~~~~~~~~~-l~~~~~ 314 (394)
+++ +|.+..+|..++.++ +|+.|++.++. ...+..++ .+++|+.|++++|. . ..+|.. +..+++
T Consensus 383 ~Ls-~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~--l-~~lp~~~~~~l~~ 458 (636)
T 4eco_A 383 SFA-HNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ--I-SKFPKELFSTGSP 458 (636)
T ss_dssp ECC-SSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC--C-CSCCTHHHHTTCC
T ss_pred Ecc-CCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc--c-CcCCHHHHccCCC
Confidence 666 666555665555433 56666666655 33444455 55667777777764 2 244543 345777
Q ss_pred CcEEEecCCCCCCccCC-CCCCCC-------CCceEEEEecccCCCCCccccc--CCCCCCeEEEecccccCceeEEeCC
Q 037494 315 LECLKLVNGSKLSRMVL-SEYQFP-------PSLIQLSLSNTELMEDPMPMLE--RLPRLQVMKLKRNSYFGRKLACVGS 384 (394)
Q Consensus 315 L~~L~l~~~~~L~~L~p-~~~~~l-------~~L~~L~L~~~~l~~~~~~~l~--~l~~L~~L~l~~n~~~~~~~~~~~~ 384 (394)
|+.|++++ +.+..+ | ...... ++|+.|+|++|++.. .+..+. .+++|+.|++++|.+.+.. .. .
T Consensus 459 L~~L~Ls~-N~l~~i-~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~ip--~~-~ 532 (636)
T 4eco_A 459 LSSINLMG-NMLTEI-PKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSKFP--TQ-P 532 (636)
T ss_dssp CSEEECCS-SCCSBC-CSSSSEETTEECTTGGGCCEEECCSSCCCB-CCGGGSTTTCTTCCEEECCSSCCSSCC--CG-G
T ss_pred CCEEECCC-CCCCCc-CHHHhccccccccccCCccEEECcCCcCCc-cChhhhhccCCCcCEEECCCCCCCCcC--hh-h
Confidence 88888877 566666 5 332202 289999999999873 344555 8999999999999887622 12 3
Q ss_pred CCCcCCccc
Q 037494 385 GGFPELQVL 393 (394)
Q Consensus 385 ~~fp~L~~L 393 (394)
..+++|+.|
T Consensus 533 ~~l~~L~~L 541 (636)
T 4eco_A 533 LNSSTLKGF 541 (636)
T ss_dssp GGCSSCCEE
T ss_pred hcCCCCCEE
Confidence 357777765
No 14
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.88 E-value=4.9e-23 Score=212.52 Aligned_cols=245 Identities=17% Similarity=0.132 Sum_probs=157.0
Q ss_pred ceEEEEEEeCCcch-hhcc-CCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCC-CCcccccCcccccE
Q 037494 123 TVKRCFILEDLIEF-ISLE-QSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLD-QFPPGLENLFLLKY 199 (394)
Q Consensus 123 ~~r~L~l~~~~~~~-~~~~-~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~ 199 (394)
.++.+.+..+.... ++.. ..+++|+.|.+.++.... .++..+..+++|++|++++|.+. .+|..++.+++|++
T Consensus 395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 470 (768)
T 3rgz_A 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG----TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470 (768)
T ss_dssp CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES----CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC----cccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceE
Confidence 35555555333321 2222 455666666666654431 22333366666666666666665 55666666666667
Q ss_pred EecCCCCCc-cccccccCCCCCcEEEcc-cCCcc-ccchhhccCccCcEEEeeCCCCC-CCCCCCCCCCCcCceeCcccc
Q 037494 200 LQLNIPTLK-CLPLLICTLLNLETLEMP-AGYID-HSPEGIWMMQKLMHLNFDSITLP-APPKNYSSSLKNLIFISALHP 275 (394)
Q Consensus 200 L~l~~~~l~-~lp~~l~~l~~L~~L~l~-~~~l~-~lp~~i~~l~~L~~L~l~~~~~~-~~~p~~l~~l~~L~~L~~~~~ 275 (394)
|++++|.+. .+|..++++++|++|+++ | .+. .+|..++.+++|++|+++ +|.+ ..+|..++.+++|+.|++.+|
T Consensus 471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~L~-~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNN-RLTGEIPKWIGRLENLAILKLS-NNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECC-SSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred EEecCCcccCcCCHHHhcCCCCCEEEccCC-ccCCcCChHHhcCCCCCEEECC-CCcccCcCCHHHcCCCCCCEEECCCC
Confidence 766666665 456666666677777776 6 443 566666666777777776 6663 355666666666666666655
Q ss_pred C--CCcch----------------------------------------------------------------------hc
Q 037494 276 S--SCTPD----------------------------------------------------------------------IL 283 (394)
Q Consensus 276 ~--~~~~~----------------------------------------------------------------------~l 283 (394)
. +..|. .+
T Consensus 549 ~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~ 628 (768)
T 3rgz_A 549 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628 (768)
T ss_dssp EEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC
T ss_pred ccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhh
Confidence 4 22222 23
Q ss_pred CCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCC-ccCC-CCCCCCCCceEEEEecccCCCCCcccccCC
Q 037494 284 SRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLS-RMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERL 361 (394)
Q Consensus 284 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~-~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l 361 (394)
+.+++|+.|++++|. ..+.+|..++.++.|+.|+|++ +++. .+ | .++. +++|+.|+|++|+++...+..++.+
T Consensus 629 ~~l~~L~~LdLs~N~--l~g~ip~~l~~l~~L~~L~Ls~-N~l~g~i-p~~l~~-L~~L~~LdLs~N~l~g~ip~~l~~l 703 (768)
T 3rgz_A 629 DNNGSMMFLDMSYNM--LSGYIPKEIGSMPYLFILNLGH-NDISGSI-PDEVGD-LRGLNILDLSSNKLDGRIPQAMSAL 703 (768)
T ss_dssp SSSBCCCEEECCSSC--CBSCCCGGGGGCTTCCEEECCS-SCCCSCC-CGGGGG-CTTCCEEECCSSCCEECCCGGGGGC
T ss_pred hccccccEEECcCCc--ccccCCHHHhccccCCEEeCcC-CccCCCC-ChHHhC-CCCCCEEECCCCcccCcCChHHhCC
Confidence 345667777777776 6667777788888888888877 4454 45 7 7777 8888888888888877777778888
Q ss_pred CCCCeEEEecccccCce
Q 037494 362 PRLQVMKLKRNSYFGRK 378 (394)
Q Consensus 362 ~~L~~L~l~~n~~~~~~ 378 (394)
++|++|++++|.++|..
T Consensus 704 ~~L~~L~ls~N~l~g~i 720 (768)
T 3rgz_A 704 TMLTEIDLSNNNLSGPI 720 (768)
T ss_dssp CCCSEEECCSSEEEEEC
T ss_pred CCCCEEECcCCcccccC
Confidence 88888888888776654
No 15
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=2.2e-22 Score=187.27 Aligned_cols=239 Identities=17% Similarity=0.076 Sum_probs=166.7
Q ss_pred CCceEEEEEEeCCcchhhc--cCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCccccc
Q 037494 121 LATVKRCFILEDLIEFISL--EQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLK 198 (394)
Q Consensus 121 ~~~~r~L~l~~~~~~~~~~--~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~ 198 (394)
...++.|.+..+....++. ...+++|+.|.+.++.... ..+..|.++++|++|++++|.+..+|..+. ++|+
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~ 126 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK----IHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLV 126 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE----ECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCC
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCc----cCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCC
Confidence 3456667776555555433 2566777777777766652 113334777777777777777777766554 6777
Q ss_pred EEecCCCCCcccccc-ccCCCCCcEEEcc-cCCcc---ccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCcc
Q 037494 199 YLQLNIPTLKCLPLL-ICTLLNLETLEMP-AGYID---HSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISAL 273 (394)
Q Consensus 199 ~L~l~~~~l~~lp~~-l~~l~~L~~L~l~-~~~l~---~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~ 273 (394)
+|++++|.+..+|.. ++.+++|++|+++ | .+. ..|..+..+ +|++|+++ +|.+..+|..+. ++|++|++.
T Consensus 127 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l-~L~~L~l~-~n~l~~l~~~~~--~~L~~L~l~ 201 (332)
T 2ft3_A 127 ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN-PLENSGFEPGAFDGL-KLNYLRIS-EAKLTGIPKDLP--ETLNELHLD 201 (332)
T ss_dssp EEECCSSCCCCCCSGGGSSCSSCCEEECCSC-CCBGGGSCTTSSCSC-CCSCCBCC-SSBCSSCCSSSC--SSCSCCBCC
T ss_pred EEECCCCccCccCHhHhCCCccCCEEECCCC-ccccCCCCcccccCC-ccCEEECc-CCCCCccCcccc--CCCCEEECC
Confidence 777777777766643 6677777777777 6 553 234445555 77777777 777666766554 678888888
Q ss_pred ccC--CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccC
Q 037494 274 HPS--SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTEL 350 (394)
Q Consensus 274 ~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l 350 (394)
++. ...+..+..+++|+.|++++|. .....+..+..+++|+.|++++ +.+..+ | ++.. +++|+.|++++|++
T Consensus 202 ~n~i~~~~~~~l~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L~~-N~l~~l-p~~l~~-l~~L~~L~l~~N~l 276 (332)
T 2ft3_A 202 HNKIQAIELEDLLRYSKLYRLGLGHNQ--IRMIENGSLSFLPTLRELHLDN-NKLSRV-PAGLPD-LKLLQVVYLHTNNI 276 (332)
T ss_dssp SSCCCCCCTTSSTTCTTCSCCBCCSSC--CCCCCTTGGGGCTTCCEEECCS-SCCCBC-CTTGGG-CTTCCEEECCSSCC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCc--CCcCChhHhhCCCCCCEEECCC-CcCeec-Chhhhc-CccCCEEECCCCCC
Confidence 777 3344678888899999998886 4444455778888999999988 678888 8 8887 89999999999988
Q ss_pred CCCCcccccC------CCCCCeEEEeccccc
Q 037494 351 MEDPMPMLER------LPRLQVMKLKRNSYF 375 (394)
Q Consensus 351 ~~~~~~~l~~------l~~L~~L~l~~n~~~ 375 (394)
+..+...+.. .++|+.|++++|.+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 277 TKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CccChhHccccccccccccccceEeecCccc
Confidence 7766655543 467889999888765
No 16
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.88 E-value=4.2e-22 Score=193.23 Aligned_cols=239 Identities=18% Similarity=0.146 Sum_probs=197.5
Q ss_pred EEEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCc-ccccCcccccEEecC
Q 037494 125 KRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFP-PGLENLFLLKYLQLN 203 (394)
Q Consensus 125 r~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~ 203 (394)
+.+.........+|.. -.++++.|.+.++.... ..++.|.++++|++|++++|.+..++ ..+..+++|++|+++
T Consensus 57 ~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQG-IPSNTRYLNLMENNIQM----IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp CEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred cEEEECCCCcCccCCC-CCCCccEEECcCCcCce----ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 3444443344455543 23689999999998862 11444599999999999999998665 789999999999999
Q ss_pred CCCCcccccc-ccCCCCCcEEEcc-cCCccccch-hhccCccCcEEEeeCCCC-CCCCCC-CCCCCCcCceeCccccCCC
Q 037494 204 IPTLKCLPLL-ICTLLNLETLEMP-AGYIDHSPE-GIWMMQKLMHLNFDSITL-PAPPKN-YSSSLKNLIFISALHPSSC 278 (394)
Q Consensus 204 ~~~l~~lp~~-l~~l~~L~~L~l~-~~~l~~lp~-~i~~l~~L~~L~l~~~~~-~~~~p~-~l~~l~~L~~L~~~~~~~~ 278 (394)
+|.+..+|.. ++.+++|++|+++ | .+..+|. .+..+++|++|+++ +|. +..++. .++.+++|+.|++.++...
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~-~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 209 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLG-ELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECC-CCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred CCcCCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCC-CCCCccccChhhccCCCCCCEEECCCCccc
Confidence 9999998865 7889999999999 8 8888886 68899999999999 755 666665 4889999999999999833
Q ss_pred cchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCccc
Q 037494 279 TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPM 357 (394)
Q Consensus 279 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~ 357 (394)
....+..+++|+.|++++|. .....+..+..+++|+.|++++ +.+..+.| .+.. +++|+.|+|++|+++..+...
T Consensus 210 ~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~ 285 (452)
T 3zyi_A 210 DMPNLTPLVGLEELEMSGNH--FPEIRPGSFHGLSSLKKLWVMN-SQVSLIERNAFDG-LASLVELNLAHNNLSSLPHDL 285 (452)
T ss_dssp SCCCCTTCTTCCEEECTTSC--CSEECGGGGTTCTTCCEEECTT-SCCCEECTTTTTT-CTTCCEEECCSSCCSCCCTTS
T ss_pred ccccccccccccEEECcCCc--CcccCcccccCccCCCEEEeCC-CcCceECHHHhcC-CCCCCEEECCCCcCCccChHH
Confidence 44568899999999999997 6666688899999999999998 67777745 7888 999999999999998777777
Q ss_pred ccCCCCCCeEEEecccc
Q 037494 358 LERLPRLQVMKLKRNSY 374 (394)
Q Consensus 358 l~~l~~L~~L~l~~n~~ 374 (394)
+..+++|+.|++++|.+
T Consensus 286 ~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 286 FTPLRYLVELHLHHNPW 302 (452)
T ss_dssp STTCTTCCEEECCSSCE
T ss_pred hccccCCCEEEccCCCc
Confidence 88999999999988864
No 17
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=8e-22 Score=192.55 Aligned_cols=232 Identities=19% Similarity=0.142 Sum_probs=178.2
Q ss_pred CCcchhhccCCCCCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCC-cccccCcccccEEecCCCCCcc
Q 037494 132 DLIEFISLEQSDMYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQF-PPGLENLFLLKYLQLNIPTLKC 209 (394)
Q Consensus 132 ~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~~ 209 (394)
.....+|.. -.+.++.|.+.++... .+ ++.|.++++|++|++++|.+..+ |..++++++|++|++++|.++.
T Consensus 21 ~~l~~ip~~-~~~~l~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 94 (477)
T 2id5_A 21 KRFVAVPEG-IPTETRLLDLGKNRIK-----TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL 94 (477)
T ss_dssp CCCSSCCSC-CCTTCSEEECCSSCCC-----EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred CCcCcCCCC-CCCCCcEEECCCCccc-----eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCc
Confidence 334445543 2468999999999886 33 44459999999999999999866 7889999999999999999999
Q ss_pred cccc-ccCCCCCcEEEcc-cCCcccc-chhhccCccCcEEEeeCCCCCCCC-CCCCCCCCcCceeCccccC-C-Ccchhc
Q 037494 210 LPLL-ICTLLNLETLEMP-AGYIDHS-PEGIWMMQKLMHLNFDSITLPAPP-KNYSSSLKNLIFISALHPS-S-CTPDIL 283 (394)
Q Consensus 210 lp~~-l~~l~~L~~L~l~-~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~~~~~~-~-~~~~~l 283 (394)
+|.. ++++++|++|+++ | .+..+ |..+..+++|++|+++ +|.+..+ |..++.+++|++|++.++. . .....+
T Consensus 95 ~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 172 (477)
T 2id5_A 95 IPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVG-DNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL 172 (477)
T ss_dssp CCTTSSTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEEC-CTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHH
T ss_pred cCcccccCCCCCCEEECCCC-ccccCChhHccccccCCEEECC-CCccceeChhhccCCCCCCEEECCCCcCcccChhHh
Confidence 9865 6899999999999 8 77666 4578999999999999 9886555 4578999999999999988 3 334568
Q ss_pred CCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccCCC
Q 037494 284 SRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLP 362 (394)
Q Consensus 284 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~ 362 (394)
..+++|+.|+++++. .....+..+..+++|+.|++++++.+..+ | .... ..+|+.|++++|++...+...+..++
T Consensus 173 ~~l~~L~~L~l~~n~--i~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~ 248 (477)
T 2id5_A 173 SHLHGLIVLRLRHLN--INAIRDYSFKRLYRLKVLEISHWPYLDTM-TPNCLY-GLNLTSLSITHCNLTAVPYLAVRHLV 248 (477)
T ss_dssp TTCTTCCEEEEESCC--CCEECTTCSCSCTTCCEEEEECCTTCCEE-CTTTTT-TCCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred cccCCCcEEeCCCCc--CcEeChhhcccCcccceeeCCCCcccccc-Cccccc-CccccEEECcCCcccccCHHHhcCcc
Confidence 999999999999997 44445567888899999999886666666 4 3333 44666666666666544444555666
Q ss_pred CCCeEEEeccccc
Q 037494 363 RLQVMKLKRNSYF 375 (394)
Q Consensus 363 ~L~~L~l~~n~~~ 375 (394)
+|+.|++++|.+.
T Consensus 249 ~L~~L~Ls~n~l~ 261 (477)
T 2id5_A 249 YLRFLNLSYNPIS 261 (477)
T ss_dssp TCCEEECCSSCCC
T ss_pred ccCeeECCCCcCC
Confidence 6666666555543
No 18
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.88 E-value=5.1e-22 Score=191.99 Aligned_cols=239 Identities=16% Similarity=0.161 Sum_probs=196.7
Q ss_pred EEEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCc-ccccCcccccEEecC
Q 037494 125 KRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFP-PGLENLFLLKYLQLN 203 (394)
Q Consensus 125 r~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~ 203 (394)
+.+.........+|.. -.++++.|.+.++.... ..+..|.++++|++|++++|.+..++ ..+..+++|++|+++
T Consensus 46 ~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~----~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 46 SKVICVRKNLREVPDG-ISTNTRLLNLHENQIQI----IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp CEEECCSCCCSSCCSC-CCTTCSEEECCSCCCCE----ECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CEEEeCCCCcCcCCCC-CCCCCcEEEccCCcCCe----eCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 3444443444455543 24789999999998863 11344499999999999999998765 788999999999999
Q ss_pred CCCCccccc-cccCCCCCcEEEcc-cCCccccch-hhccCccCcEEEeeCCCC-CCCCCC-CCCCCCcCceeCccccCCC
Q 037494 204 IPTLKCLPL-LICTLLNLETLEMP-AGYIDHSPE-GIWMMQKLMHLNFDSITL-PAPPKN-YSSSLKNLIFISALHPSSC 278 (394)
Q Consensus 204 ~~~l~~lp~-~l~~l~~L~~L~l~-~~~l~~lp~-~i~~l~~L~~L~l~~~~~-~~~~p~-~l~~l~~L~~L~~~~~~~~ 278 (394)
+|.++.+|. .+..+++|++|+++ | .+..+|. .+..+++|++|+++ +|. ...++. .++.+++|+.|++.++...
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~-~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLG-ELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECC-CCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred CCcCCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCC-CCCCcceeCcchhhcccccCeecCCCCcCc
Confidence 999999886 58899999999999 8 8888876 68899999999999 755 666665 4889999999999999843
Q ss_pred cchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCccc
Q 037494 279 TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPM 357 (394)
Q Consensus 279 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~ 357 (394)
..+.+..+++|+.|++++|. .....+..+..+++|+.|++++ +.+..+.| .+.. +++|+.|+|++|+++..+...
T Consensus 199 ~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~ 274 (440)
T 3zyj_A 199 EIPNLTPLIKLDELDLSGNH--LSAIRPGSFQGLMHLQKLWMIQ-SQIQVIERNAFDN-LQSLVEINLAHNNLTLLPHDL 274 (440)
T ss_dssp SCCCCTTCSSCCEEECTTSC--CCEECTTTTTTCTTCCEEECTT-CCCCEECTTSSTT-CTTCCEEECTTSCCCCCCTTT
T ss_pred cccccCCCcccCEEECCCCc--cCccChhhhccCccCCEEECCC-CceeEEChhhhcC-CCCCCEEECCCCCCCccChhH
Confidence 44468899999999999996 5566678899999999999998 77888745 7888 999999999999998877777
Q ss_pred ccCCCCCCeEEEecccc
Q 037494 358 LERLPRLQVMKLKRNSY 374 (394)
Q Consensus 358 l~~l~~L~~L~l~~n~~ 374 (394)
+..+++|+.|++++|.+
T Consensus 275 ~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 275 FTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TSSCTTCCEEECCSSCE
T ss_pred hccccCCCEEEcCCCCc
Confidence 89999999999988864
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=1.9e-22 Score=208.27 Aligned_cols=243 Identities=14% Similarity=0.141 Sum_probs=137.7
Q ss_pred CCceEEEEEEeCCcch------------------hhcc-C--CCCCccEEEEecCCCccchhcchhHHhccCCceeEEEc
Q 037494 121 LATVKRCFILEDLIEF------------------ISLE-Q--SDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNW 179 (394)
Q Consensus 121 ~~~~r~L~l~~~~~~~------------------~~~~-~--~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l 179 (394)
..+++.|.+..+.... +|.. . .+++|+.|.+.++.... .+|..+.++++|++|++
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~----~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT----QLPDFLYDLPELQSLNI 522 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC----SCCGGGGGCSSCCEEEC
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc----cChHHHhCCCCCCEEEC
Confidence 5567788887666655 5554 3 57778888887776542 33443466666666666
Q ss_pred CCCC-CCC--CcccccCcc-------cccEEecCCCCCccccc--cccCCCCCcEEEcc-cCCccccchhhccCccCcEE
Q 037494 180 GSAV-LDQ--FPPGLENLF-------LLKYLQLNIPTLKCLPL--LICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHL 246 (394)
Q Consensus 180 ~~~~-~~~--lp~~i~~l~-------~L~~L~l~~~~l~~lp~--~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L 246 (394)
++|. ++. +|..++.+. +|++|++++|.+..+|. .++++++|++|+++ | .+..+| .++.+++|+.|
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp-~~~~L~~L~~L 600 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLE-AFGTNVKLTDL 600 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTS-CCCBCC-CCCTTSEESEE
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCC-Ccccch-hhcCCCcceEE
Confidence 6665 552 555454444 66666666666556665 55666666666666 5 455555 55555566666
Q ss_pred EeeCCCCCCCCCCCCCCCCc-CceeCccccC-CCcchhcCCC-------------------------------CCCCeEE
Q 037494 247 NFDSITLPAPPKNYSSSLKN-LIFISALHPS-SCTPDILSRL-------------------------------PTVQTLR 293 (394)
Q Consensus 247 ~l~~~~~~~~~p~~l~~l~~-L~~L~~~~~~-~~~~~~l~~l-------------------------------~~L~~L~ 293 (394)
+++ +|.+..+|..++.+++ |+.|++.++. ...+..++.+ ++|+.|+
T Consensus 601 ~Ls-~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~ 679 (876)
T 4ecn_A 601 KLD-YNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVT 679 (876)
T ss_dssp ECC-SSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEE
T ss_pred ECc-CCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEE
Confidence 665 5554455555555555 5555555554 2222222222 2455555
Q ss_pred EeecCCccccchhhhh-cCCCCCcEEEecCCCCCCccCC-CCCCC-------CCCceEEEEecccCCCCCccccc--CCC
Q 037494 294 ISGDLSHYHSGVSKSL-CELHKLECLKLVNGSKLSRMVL-SEYQF-------PPSLIQLSLSNTELMEDPMPMLE--RLP 362 (394)
Q Consensus 294 l~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~L~~L~p-~~~~~-------l~~L~~L~L~~~~l~~~~~~~l~--~l~ 362 (394)
+++|. ...+|..+ ..+++|+.|+|++ +.+..+ | ++... +++|+.|+|++|++.. .+..+. .++
T Consensus 680 Ls~N~---L~~lp~~~~~~l~~L~~L~Ls~-N~L~~i-p~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-lp~~l~~~~l~ 753 (876)
T 4ecn_A 680 LSYNE---IQKFPTELFATGSPISTIILSN-NLMTSI-PENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLP 753 (876)
T ss_dssp CCSSC---CCSCCHHHHHTTCCCSEEECCS-CCCSCC-CTTSSSCTTSCCTTGGGCCEEECCSSCCCC-CCGGGSTTTCT
T ss_pred ccCCc---CCccCHHHHccCCCCCEEECCC-CcCCcc-ChHHhccccccccccCCccEEECCCCCCcc-chHHhhhccCC
Confidence 55553 22444443 3567777777776 455555 4 33220 1267777777776652 333444 667
Q ss_pred CCCeEEEecccccC
Q 037494 363 RLQVMKLKRNSYFG 376 (394)
Q Consensus 363 ~L~~L~l~~n~~~~ 376 (394)
+|+.|+|++|.+.+
T Consensus 754 ~L~~L~Ls~N~L~~ 767 (876)
T 4ecn_A 754 YLSNMDVSYNCFSS 767 (876)
T ss_dssp TCCEEECCSSCCSS
T ss_pred CcCEEEeCCCCCCc
Confidence 77777776666655
No 20
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.88 E-value=1.2e-22 Score=209.55 Aligned_cols=225 Identities=19% Similarity=0.203 Sum_probs=177.5
Q ss_pred CCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCC-CCcccccCcccccEEecCCCCCc-cccccccCCCCC
Q 037494 143 DMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLD-QFPPGLENLFLLKYLQLNIPTLK-CLPLLICTLLNL 220 (394)
Q Consensus 143 ~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~l~-~lp~~l~~l~~L 220 (394)
+++|+.|.+.++.... .++..+.++++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..++.+++|
T Consensus 393 ~~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 468 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTG----KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468 (768)
T ss_dssp TCCCCEEECCSSEEEE----ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred cCCccEEECCCCcccc----ccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCc
Confidence 5567777777766542 33444588889999999998877 67888888899999999988877 678888888999
Q ss_pred cEEEcc-cCCcc-ccchhhccCccCcEEEeeCCCCCC-CCCCCCCCCCcCceeCccccC--CCcchhcCCCCCCCeEEEe
Q 037494 221 ETLEMP-AGYID-HSPEGIWMMQKLMHLNFDSITLPA-PPKNYSSSLKNLIFISALHPS--SCTPDILSRLPTVQTLRIS 295 (394)
Q Consensus 221 ~~L~l~-~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~ 295 (394)
++|+++ | .+. .+|..++.+++|++|+++ +|.+. .+|..++.+++|++|++.+|. +..+..++.+++|+.|+++
T Consensus 469 ~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L~-~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 546 (768)
T 3rgz_A 469 ETLILDFN-DLTGEIPSGLSNCTNLNWISLS-NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546 (768)
T ss_dssp CEEECCSS-CCCSCCCGGGGGCTTCCEEECC-SSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECC
T ss_pred eEEEecCC-cccCcCCHHHhcCCCCCEEEcc-CCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECC
Confidence 999999 7 554 678888889999999998 88844 778888889999999998888 5677888888999999988
Q ss_pred ecCCccccchhh--------------------------------------------------------------------
Q 037494 296 GDLSHYHSGVSK-------------------------------------------------------------------- 307 (394)
Q Consensus 296 ~~~~~~~~~~~~-------------------------------------------------------------------- 307 (394)
+|. ..+.+|.
T Consensus 547 ~N~--l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~ 624 (768)
T 3rgz_A 547 TNL--FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624 (768)
T ss_dssp SSE--EESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEEC
T ss_pred CCc--cCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccC
Confidence 876 3323332
Q ss_pred --hhcCCCCCcEEEecCCCCCC-ccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccccCce
Q 037494 308 --SLCELHKLECLKLVNGSKLS-RMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRK 378 (394)
Q Consensus 308 --~l~~~~~L~~L~l~~~~~L~-~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 378 (394)
.++.+++|+.|++++ +++. .+ | .++. +++|+.|+|++|+++...+..++++++|+.|++++|.+++..
T Consensus 625 ~~~~~~l~~L~~LdLs~-N~l~g~i-p~~l~~-l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~i 696 (768)
T 3rgz_A 625 SPTFDNNGSMMFLDMSY-NMLSGYI-PKEIGS-MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696 (768)
T ss_dssp CCSCSSSBCCCEEECCS-SCCBSCC-CGGGGG-CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECC
T ss_pred chhhhccccccEEECcC-CcccccC-CHHHhc-cccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcC
Confidence 233456778888887 4454 44 7 8888 899999999999988888888999999999999999887665
No 21
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=6.8e-22 Score=183.76 Aligned_cols=238 Identities=18% Similarity=0.165 Sum_probs=192.8
Q ss_pred eEEEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCC-cccccCcccccEEe
Q 037494 124 VKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQF-PPGLENLFLLKYLQ 201 (394)
Q Consensus 124 ~r~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~ 201 (394)
++.+.+.......+|.. -.+.++.|.+.++... .+ +..|.++++|++|++++|.+..+ |..++.+++|++|+
T Consensus 33 l~~l~~~~~~l~~lp~~-~~~~l~~L~L~~n~i~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 33 LRVVQCSDLGLEKVPKD-LPPDTALLDLQNNKIT-----EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp TTEEECTTSCCCSCCCS-CCTTCCEEECCSSCCC-----CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CeEEEecCCCccccCcc-CCCCCeEEECCCCcCC-----EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 44555543344445443 2468999999999876 33 33449999999999999999977 78899999999999
Q ss_pred cCCCCCccccccccCCCCCcEEEcc-cCCccccch-hhccCccCcEEEeeCCCCCC---CCCCCCCCCCcCceeCccccC
Q 037494 202 LNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPE-GIWMMQKLMHLNFDSITLPA---PPKNYSSSLKNLIFISALHPS 276 (394)
Q Consensus 202 l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~---~~p~~l~~l~~L~~L~~~~~~ 276 (394)
+++|.++.+|..+. ++|++|+++ | .+..++. .+..+++|++|+++ +|... ..+..++.+++|+.|++.++.
T Consensus 107 Ls~n~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 107 LSKNQLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELG-TNPLKSSGIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp CCSSCCSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECC-SSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred CCCCcCCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECC-CCcCCccCcChhhccCCCCcCEEECCCCc
Confidence 99999999998775 799999999 8 8888775 58899999999999 88754 445678899999999999888
Q ss_pred -CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCC
Q 037494 277 -SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDP 354 (394)
Q Consensus 277 -~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~ 354 (394)
...+..+. ++|+.|++++|. .....+..+..+++|+.|++++ +.+..+.| ++.. +++|+.|++++|++. ..
T Consensus 183 l~~l~~~~~--~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~-l~~L~~L~L~~N~l~-~l 255 (330)
T 1xku_A 183 ITTIPQGLP--PSLTELHLDGNK--ITKVDAASLKGLNNLAKLGLSF-NSISAVDNGSLAN-TPHLRELHLNNNKLV-KV 255 (330)
T ss_dssp CCSCCSSCC--TTCSEEECTTSC--CCEECTGGGTTCTTCCEEECCS-SCCCEECTTTGGG-STTCCEEECCSSCCS-SC
T ss_pred cccCCcccc--ccCCEEECCCCc--CCccCHHHhcCCCCCCEEECCC-CcCceeChhhccC-CCCCCEEECCCCcCc-cC
Confidence 55554443 799999999996 5555577899999999999998 66777734 7777 999999999999986 44
Q ss_pred cccccCCCCCCeEEEecccccCce
Q 037494 355 MPMLERLPRLQVMKLKRNSYFGRK 378 (394)
Q Consensus 355 ~~~l~~l~~L~~L~l~~n~~~~~~ 378 (394)
+..+..+++|++|++++|.+++..
T Consensus 256 p~~l~~l~~L~~L~l~~N~i~~~~ 279 (330)
T 1xku_A 256 PGGLADHKYIQVVYLHNNNISAIG 279 (330)
T ss_dssp CTTTTTCSSCCEEECCSSCCCCCC
T ss_pred ChhhccCCCcCEEECCCCcCCccC
Confidence 456889999999999999877543
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.87 E-value=3.6e-22 Score=201.68 Aligned_cols=215 Identities=16% Similarity=0.157 Sum_probs=172.4
Q ss_pred HhccCCceeEEEcCCCCCC-CCcccccCcccccEEecCCCCCccccccccCCCC-CcEEEcc-cCCccccchhhccCc--
Q 037494 167 FCENFKYLRVLNWGSAVLD-QFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLN-LETLEMP-AGYIDHSPEGIWMMQ-- 241 (394)
Q Consensus 167 ~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~-L~~L~l~-~~~l~~lp~~i~~l~-- 241 (394)
.+.++++|++|++++|.+. .+| .++.+++|++|++++|.+..+|..++.+++ |++|+++ | .+..+|..++.+.
T Consensus 325 ~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N-~l~~lp~~~~~~~l~ 402 (636)
T 4eco_A 325 SLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN-KLKYIPNIFDAKSVS 402 (636)
T ss_dssp HHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSS-CCSSCCSCCCTTCSS
T ss_pred hhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCC-cCcccchhhhhcccC
Confidence 4599999999999999999 899 899999999999999999999999999999 9999999 8 8889998777655
Q ss_pred cCcEEEeeCCCC-CCCCCCCCC-------CCCcCceeCccccC-CCcchh-cCCCCCCCeEEEeecCCccccchhhhhcC
Q 037494 242 KLMHLNFDSITL-PAPPKNYSS-------SLKNLIFISALHPS-SCTPDI-LSRLPTVQTLRISGDLSHYHSGVSKSLCE 311 (394)
Q Consensus 242 ~L~~L~l~~~~~-~~~~p~~l~-------~l~~L~~L~~~~~~-~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~l~~ 311 (394)
+|++|+++ +|. ....|..++ .+++|++|++.++. ...+.. +..+++|+.|++++|. .. .+|..+..
T Consensus 403 ~L~~L~Ls-~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~--l~-~i~~~~~~ 478 (636)
T 4eco_A 403 VMSAIDFS-YNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM--LT-EIPKNSLK 478 (636)
T ss_dssp CEEEEECC-SSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC--CS-BCCSSSSE
T ss_pred ccCEEECc-CCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCC--CC-CcCHHHhc
Confidence 89999999 988 445666777 78899999999988 555544 4568999999999996 33 55543322
Q ss_pred --------CCCCcEEEecCCCCCCccCC-CCC--CCCCCceEEEEecccCCCCCcccccCCCCCCeEEEec------ccc
Q 037494 312 --------LHKLECLKLVNGSKLSRMVL-SEY--QFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKR------NSY 374 (394)
Q Consensus 312 --------~~~L~~L~l~~~~~L~~L~p-~~~--~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~------n~~ 374 (394)
+++|+.|++++ +++..+ | .+. . +++|+.|+|++|++.. .+..+..+++|+.|++++ |.+
T Consensus 479 ~~~~~~~~l~~L~~L~Ls~-N~l~~l-p~~~~~~~-l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l 554 (636)
T 4eco_A 479 DENENFKNTYLLTSIDLRF-NKLTKL-SDDFRATT-LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRT 554 (636)
T ss_dssp ETTEECTTGGGCCEEECCS-SCCCBC-CGGGSTTT-CTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBC
T ss_pred cccccccccCCccEEECcC-CcCCcc-Chhhhhcc-CCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcc
Confidence 23899999998 778888 8 665 7 9999999999999876 556788999999999965 333
Q ss_pred cCceeEEeCCCCCcCCccc
Q 037494 375 FGRKLACVGSGGFPELQVL 393 (394)
Q Consensus 375 ~~~~~~~~~~~~fp~L~~L 393 (394)
.+.... . ...+++|+.|
T Consensus 555 ~~~~p~-~-l~~l~~L~~L 571 (636)
T 4eco_A 555 LREWPE-G-ITLCPSLTQL 571 (636)
T ss_dssp CCCCCT-T-GGGCSSCCEE
T ss_pred cccChH-H-HhcCCCCCEE
Confidence 333210 1 2346677765
No 23
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=3.8e-22 Score=185.65 Aligned_cols=237 Identities=16% Similarity=0.101 Sum_probs=192.6
Q ss_pred ceEEEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCC-cccccCcccccEE
Q 037494 123 TVKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQF-PPGLENLFLLKYL 200 (394)
Q Consensus 123 ~~r~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L 200 (394)
.++.+.+..+....+|... .++++.|.+.++... .+ ++.|.++++|++|++++|.++.+ |..++.+++|++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDIS-----ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL 107 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCC-----EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCC-----ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence 3556666645555555442 478999999999876 33 43449999999999999999966 7889999999999
Q ss_pred ecCCCCCccccccccCCCCCcEEEcc-cCCccccch-hhccCccCcEEEeeCCCCCC---CCCCCCCCCCcCceeCcccc
Q 037494 201 QLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPE-GIWMMQKLMHLNFDSITLPA---PPKNYSSSLKNLIFISALHP 275 (394)
Q Consensus 201 ~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~---~~p~~l~~l~~L~~L~~~~~ 275 (394)
++++|.+..+|..+. ++|++|+++ | .+..+|. .+..+++|++|+++ +|... ..|..++.+ +|+.|++..+
T Consensus 108 ~L~~n~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~~~l-~L~~L~l~~n 182 (332)
T 2ft3_A 108 YISKNHLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMG-GNPLENSGFEPGAFDGL-KLNYLRISEA 182 (332)
T ss_dssp ECCSSCCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECC-SCCCBGGGSCTTSSCSC-CCSCCBCCSS
T ss_pred ECCCCcCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECC-CCccccCCCCcccccCC-ccCEEECcCC
Confidence 999999999998876 899999999 8 8888886 48899999999999 88854 445667777 9999999988
Q ss_pred C-CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCC
Q 037494 276 S-SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMED 353 (394)
Q Consensus 276 ~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~ 353 (394)
. ...+..+. ++|+.|++++|. .....+..+..+++|+.|++++ +.+..+.| ++.. +++|+.|++++|++. .
T Consensus 183 ~l~~l~~~~~--~~L~~L~l~~n~--i~~~~~~~l~~l~~L~~L~L~~-N~l~~~~~~~~~~-l~~L~~L~L~~N~l~-~ 255 (332)
T 2ft3_A 183 KLTGIPKDLP--ETLNELHLDHNK--IQAIELEDLLRYSKLYRLGLGH-NQIRMIENGSLSF-LPTLRELHLDNNKLS-R 255 (332)
T ss_dssp BCSSCCSSSC--SSCSCCBCCSSC--CCCCCTTSSTTCTTCSCCBCCS-SCCCCCCTTGGGG-CTTCCEEECCSSCCC-B
T ss_pred CCCccCcccc--CCCCEEECCCCc--CCccCHHHhcCCCCCCEEECCC-CcCCcCChhHhhC-CCCCCEEECCCCcCe-e
Confidence 8 55555444 789999999996 5555557888999999999998 67777734 6777 999999999999986 3
Q ss_pred CcccccCCCCCCeEEEecccccCc
Q 037494 354 PMPMLERLPRLQVMKLKRNSYFGR 377 (394)
Q Consensus 354 ~~~~l~~l~~L~~L~l~~n~~~~~ 377 (394)
.+..++.+++|++|++++|.++..
T Consensus 256 lp~~l~~l~~L~~L~l~~N~l~~~ 279 (332)
T 2ft3_A 256 VPAGLPDLKLLQVVYLHTNNITKV 279 (332)
T ss_dssp CCTTGGGCTTCCEEECCSSCCCBC
T ss_pred cChhhhcCccCCEEECCCCCCCcc
Confidence 445688999999999999987654
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=1.6e-21 Score=189.85 Aligned_cols=249 Identities=19% Similarity=0.165 Sum_probs=153.4
Q ss_pred CCceEEEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEE
Q 037494 121 LATVKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYL 200 (394)
Q Consensus 121 ~~~~r~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 200 (394)
...++++.+..+....++....+++|+.|.+.++... .++.+ .++++|++|++++|.+..+++ ++++++|++|
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~-----~~~~~-~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 117 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT-----DITPL-KNLTKLVDILMNNNQIADITP-LANLTNLTGL 117 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC-----CCGGG-TTCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECCCCccC-----Cchhh-hccccCCEEECCCCccccChh-hcCCCCCCEE
Confidence 3467777777566666665567888888888888775 33344 888888888888888887776 8888888888
Q ss_pred ecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccCCCc
Q 037494 201 QLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPSSCT 279 (394)
Q Consensus 201 ~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~ 279 (394)
++++|.+..+|. ++++++|++|+++ | .+..+|. ++.+++|++|+++ ++. ..++ .++.+++|+.|++.++....
T Consensus 118 ~L~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~-~~~-~~~~-~~~~l~~L~~L~l~~n~l~~ 191 (466)
T 1o6v_A 118 TLFNNQITDIDP-LKNLTNLNRLELSSN-TISDISA-LSGLTSLQQLSFG-NQV-TDLK-PLANLTTLERLDISSNKVSD 191 (466)
T ss_dssp ECCSSCCCCCGG-GTTCTTCSEEEEEEE-EECCCGG-GTTCTTCSEEEEE-ESC-CCCG-GGTTCTTCCEEECCSSCCCC
T ss_pred ECCCCCCCCChH-HcCCCCCCEEECCCC-ccCCChh-hccCCcccEeecC-Ccc-cCch-hhccCCCCCEEECcCCcCCC
Confidence 888888888775 7888888888888 7 6766653 6666666666665 322 2222 25555566666655555222
Q ss_pred chhcCCCCCCCeEEEeecCCccccchh--------------------hhhcCCCCCcEEEecCCCCCCccCCCCCCCCCC
Q 037494 280 PDILSRLPTVQTLRISGDLSHYHSGVS--------------------KSLCELHKLECLKLVNGSKLSRMVLSEYQFPPS 339 (394)
Q Consensus 280 ~~~l~~l~~L~~L~l~~~~~~~~~~~~--------------------~~l~~~~~L~~L~l~~~~~L~~L~p~~~~~l~~ 339 (394)
...+..+++|+.|++++|. .....+ ..+..+++|+.|++++ +.+..+ +.+.. +++
T Consensus 192 ~~~l~~l~~L~~L~l~~n~--l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~-n~l~~~-~~~~~-l~~ 266 (466)
T 1o6v_A 192 ISVLAKLTNLESLIATNNQ--ISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLAN-NQISNL-APLSG-LTK 266 (466)
T ss_dssp CGGGGGCTTCSEEECCSSC--CCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCS-SCCCCC-GGGTT-CTT
T ss_pred ChhhccCCCCCEEEecCCc--ccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCC-Cccccc-hhhhc-CCC
Confidence 2335555555555555553 221111 1233444444444444 233333 22444 667
Q ss_pred ceEEEEecccCCCCCcccccCCCCCCeEEEecccccCceeEEeCCCCCcCCccc
Q 037494 340 LIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQVL 393 (394)
Q Consensus 340 L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~fp~L~~L 393 (394)
|+.|++++|.+... +.++.+++|+.|++++|.+.+... ...+++|+.|
T Consensus 267 L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L 314 (466)
T 1o6v_A 267 LTELKLGANQISNI--SPLAGLTALTNLELNENQLEDISP----ISNLKNLTYL 314 (466)
T ss_dssp CSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCSCCGG----GGGCTTCSEE
T ss_pred CCEEECCCCccCcc--ccccCCCccCeEEcCCCcccCchh----hcCCCCCCEE
Confidence 77777777766432 236677777777777666655332 2345666654
No 25
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=4.1e-22 Score=183.20 Aligned_cols=215 Identities=21% Similarity=0.254 Sum_probs=181.0
Q ss_pred CCceeEEEcCCCCCCCCccc-ccCcccccEEecCCCCCccc---cccccCCCCCcEEEcc-cCCccccchhhccCccCcE
Q 037494 171 FKYLRVLNWGSAVLDQFPPG-LENLFLLKYLQLNIPTLKCL---PLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMH 245 (394)
Q Consensus 171 l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~l~~l---p~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~ 245 (394)
.++|++|++++|.++.+|.. ++++++|++|++++|.+..+ |..+..+++|++|+++ | .+..+|..+..+++|++
T Consensus 27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEH 105 (306)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCE
T ss_pred CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCE
Confidence 36899999999999998865 68999999999999998755 6677789999999999 8 89999988999999999
Q ss_pred EEeeCCCCCCCCCC--CCCCCCcCceeCccccC--CCcchhcCCCCCCCeEEEeecCCcccc-chhhhhcCCCCCcEEEe
Q 037494 246 LNFDSITLPAPPKN--YSSSLKNLIFISALHPS--SCTPDILSRLPTVQTLRISGDLSHYHS-GVSKSLCELHKLECLKL 320 (394)
Q Consensus 246 L~l~~~~~~~~~p~--~l~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~~~~L~~L~l 320 (394)
|+++ +|.+..++. .++.+++|++|++.++. ...+..++.+++|+.|++++|. ..+ ..|..+..+++|+.|++
T Consensus 106 L~l~-~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~L 182 (306)
T 2z66_A 106 LDFQ-HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS--FQENFLPDIFTELRNLTFLDL 182 (306)
T ss_dssp EECT-TSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE--EGGGEECSCCTTCTTCCEEEC
T ss_pred EECC-CCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc--cccccchhHHhhCcCCCEEEC
Confidence 9999 988666664 68899999999999988 4556678899999999999986 444 46788899999999999
Q ss_pred cCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccccCceeEEeCCCCCc-CCccc
Q 037494 321 VNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFP-ELQVL 393 (394)
Q Consensus 321 ~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~fp-~L~~L 393 (394)
++ +.+..+.| ++.. +++|+.|++++|++...+...+..+++|++|++++|.+.+..... ...+| +|+.|
T Consensus 183 s~-n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~~~~~L~~L 253 (306)
T 2z66_A 183 SQ-CQLEQLSPTAFNS-LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE--LQHFPSSLAFL 253 (306)
T ss_dssp TT-SCCCEECTTTTTT-CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS--CCCCCTTCCEE
T ss_pred CC-CCcCCcCHHHhcC-CCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH--HHhhhccCCEE
Confidence 98 67777745 8888 999999999999998777667899999999999999887654211 13343 67665
No 26
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=3.1e-21 Score=193.92 Aligned_cols=198 Identities=20% Similarity=0.150 Sum_probs=134.2
Q ss_pred ceeEEEcCCCCCCCCc-ccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCcccc-chhhccCccCcEEEee
Q 037494 173 YLRVLNWGSAVLDQFP-PGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHS-PEGIWMMQKLMHLNFD 249 (394)
Q Consensus 173 ~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~l-p~~i~~l~~L~~L~l~ 249 (394)
.|+.|++++|.+..++ ..++.+++|++|++++|.+..+|..++.+++|++|+++ | .+..+ |..+..+++|++|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTC-CCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccC-CcCcCchhhhhccCcCCEEECC
Confidence 4555666666655554 33777888888888888888888888888888888888 7 66666 4568888888888888
Q ss_pred CCCC-CCCCCCC-CCCCCcCceeCccccC-CCc---chhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCC
Q 037494 250 SITL-PAPPKNY-SSSLKNLIFISALHPS-SCT---PDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNG 323 (394)
Q Consensus 250 ~~~~-~~~~p~~-l~~l~~L~~L~~~~~~-~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 323 (394)
+|. ...+|.. ++.+++|++|++.++. ... +..++.+++|+.|++++|. .....+..+..+++|+.|++++
T Consensus 334 -~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~- 409 (606)
T 3t6q_A 334 -GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE--PLSLKTEAFKECPQLELLDLAF- 409 (606)
T ss_dssp -SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS--CEEECTTTTTTCTTCSEEECTT-
T ss_pred -CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc--CCcCCHHHhcCCccCCeEECCC-
Confidence 777 3355554 7788888888888777 222 4567888888888888886 5555566777777888888876
Q ss_pred CCCCccCC--CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccccC
Q 037494 324 SKLSRMVL--SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFG 376 (394)
Q Consensus 324 ~~L~~L~p--~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 376 (394)
+.+....| ++.. +++|+.|++++|.+....+..++.+++|++|++++|.+.+
T Consensus 410 n~l~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 463 (606)
T 3t6q_A 410 TRLKVKDAQSPFQN-LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK 463 (606)
T ss_dssp CCEECCTTCCTTTT-CTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGG
T ss_pred CcCCCcccchhhhC-cccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCc
Confidence 33332212 3444 5556666666655544444445555555555555555443
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=2.3e-21 Score=188.10 Aligned_cols=136 Identities=13% Similarity=0.014 Sum_probs=110.9
Q ss_pred CcchhhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCC-CC-cccccCcccccEEecCCCCCccc
Q 037494 133 LIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLD-QF-PPGLENLFLLKYLQLNIPTLKCL 210 (394)
Q Consensus 133 ~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-~l-p~~i~~l~~L~~L~l~~~~l~~l 210 (394)
....+|. -.++++.|.+.++.... ..+..|.++++|++|++++|.+. .+ +..++.+++|++|++++|.+..+
T Consensus 21 ~l~~lp~--l~~~l~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ 94 (455)
T 3v47_A 21 GLHQVPE--LPAHVNYVDLSLNSIAE----LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL 94 (455)
T ss_dssp CCSSCCC--CCTTCCEEECCSSCCCE----ECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEE
T ss_pred CcccCCC--CCCccCEEEecCCccCc----CChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCcc
Confidence 3344454 34789999999998862 22444599999999999999986 55 56799999999999999999876
Q ss_pred -cccccCCCCCcEEEcc-cCCccc-cchh--hccCccCcEEEeeCCCCCCCC-CCC-CCCCCcCceeCccccC
Q 037494 211 -PLLICTLLNLETLEMP-AGYIDH-SPEG--IWMMQKLMHLNFDSITLPAPP-KNY-SSSLKNLIFISALHPS 276 (394)
Q Consensus 211 -p~~l~~l~~L~~L~l~-~~~l~~-lp~~--i~~l~~L~~L~l~~~~~~~~~-p~~-l~~l~~L~~L~~~~~~ 276 (394)
|..++++++|++|+++ | .+.. .|.. ++.+++|++|+++ +|.+..+ |.. ++.+++|++|++.++.
T Consensus 95 ~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 95 ETGAFNGLANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLR-DNNIKKIQPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp CTTTTTTCTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECC-SSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred ChhhccCcccCCEEeCCCC-CCCccccCcccccCcccCCEEECC-CCccCccCcccccCCCCcccEEeCCCCc
Confidence 7789999999999999 8 6664 4544 8899999999999 9997766 444 7889999999998876
No 28
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=6e-22 Score=199.18 Aligned_cols=239 Identities=17% Similarity=0.162 Sum_probs=106.1
Q ss_pred CceEEEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCC-CCcccccCcccccEE
Q 037494 122 ATVKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLD-QFPPGLENLFLLKYL 200 (394)
Q Consensus 122 ~~~r~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L 200 (394)
.+++.+.+..+....++....+++|+.|.+.++... .++.+ .+++|++|++++|... .+ .++.+++|++|
T Consensus 285 ~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~-----~lp~~--~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L 355 (606)
T 3vq2_A 285 ANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK-----QFPTL--DLPFLKSLTLTMNKGSISF--KKVALPSLSYL 355 (606)
T ss_dssp TTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS-----SCCCC--CCSSCCEEEEESCSSCEEC--CCCCCTTCCEE
T ss_pred CCCCEEEecCccchhhhhccccccCCEEEcccccCc-----ccccC--CCCccceeeccCCcCccch--hhccCCCCCEE
Confidence 344555555444444443344555555555555442 22222 4444444444444211 11 23344444444
Q ss_pred ecCCCCCccc---cccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCC--CCCCCCCcCceeCccc
Q 037494 201 QLNIPTLKCL---PLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPK--NYSSSLKNLIFISALH 274 (394)
Q Consensus 201 ~l~~~~l~~l---p~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p--~~l~~l~~L~~L~~~~ 274 (394)
++++|.+..+ |..++.+++|++|+++ | .+..+|..+..+++|++|+++ +|.....+ ..++.+++|++|++.+
T Consensus 356 ~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~~l~~L~~L~l~~ 433 (606)
T 3vq2_A 356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMSANFMGLEELQHLDFQ-HSTLKRVTEFSAFLSLEKLLYLDISY 433 (606)
T ss_dssp ECCSSCEEEEEECCHHHHCCSCCCEEECCSC-SEEEECCCCTTCTTCCEEECT-TSEEESTTTTTTTTTCTTCCEEECTT
T ss_pred ECcCCccCCCcchhhhhccCCcccEeECCCC-ccccchhhccCCCCCCeeECC-CCccCCccChhhhhccccCCEEECcC
Confidence 4444444433 3444444455555554 4 444444444444555555554 44422222 2344444555554444
Q ss_pred cC--CCcchhcCCCCCCCeEEEeecCCcccc-chhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccC
Q 037494 275 PS--SCTPDILSRLPTVQTLRISGDLSHYHS-GVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTEL 350 (394)
Q Consensus 275 ~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l 350 (394)
+. ...+..++.+++|+.|++++|. ..+ ..|..++.+++|+.|++++ +.+..+.| ++.. +++|+.|++++|++
T Consensus 434 n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~-l~~L~~L~Ls~N~l 509 (606)
T 3vq2_A 434 TNTKIDFDGIFLGLTSLNTLKMAGNS--FKDNTLSNVFANTTNLTFLDLSK-CQLEQISWGVFDT-LHRLQLLNMSHNNL 509 (606)
T ss_dssp SCCEECCTTTTTTCTTCCEEECTTCE--EGGGEECSCCTTCTTCCEEECTT-SCCCEECTTTTTT-CTTCCEEECCSSCC
T ss_pred CCCCccchhhhcCCCCCCEEECCCCc--CCCcchHHhhccCCCCCEEECCC-CcCCccChhhhcc-cccCCEEECCCCcC
Confidence 44 2233344444455555554443 222 1334444445555555544 23333312 4444 45555555555544
Q ss_pred CCCCcccccCCCCCCeEEEeccccc
Q 037494 351 MEDPMPMLERLPRLQVMKLKRNSYF 375 (394)
Q Consensus 351 ~~~~~~~l~~l~~L~~L~l~~n~~~ 375 (394)
....+..++.+++|+.|++++|.++
T Consensus 510 ~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 510 LFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp SCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred CCcCHHHccCCCcCCEEECCCCcCc
Confidence 4433344444555555555444443
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=1.2e-21 Score=186.43 Aligned_cols=148 Identities=13% Similarity=0.141 Sum_probs=119.9
Q ss_pred CCCCCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCCc-ccccCcccccEEecCCCCCccccc-cccCC
Q 037494 141 QSDMYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQFP-PGLENLFLLKYLQLNIPTLKCLPL-LICTL 217 (394)
Q Consensus 141 ~~~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~lp~-~l~~l 217 (394)
..+++++.+.+.++... .+ +.+|..+++|++|++++|.++.++ ..++.+++|++|++++|.+..+|+ .++++
T Consensus 42 ~~l~~l~~l~l~~~~l~-----~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 116 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMR-----KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 116 (390)
T ss_dssp GGGCCCSEEEEESCEES-----EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cccCCceEEEecCCchh-----hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCC
Confidence 45789999999998775 34 455699999999999999999776 589999999999999999998765 47899
Q ss_pred CCCcEEEcc-cCCccccchh-hccCccCcEEEeeCCCCCCCCCC-CCCCCCcCceeCccccC-CCcchhcCCCCCCCeEE
Q 037494 218 LNLETLEMP-AGYIDHSPEG-IWMMQKLMHLNFDSITLPAPPKN-YSSSLKNLIFISALHPS-SCTPDILSRLPTVQTLR 293 (394)
Q Consensus 218 ~~L~~L~l~-~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~ 293 (394)
++|++|+++ | .+..+|.. ++.+++|++|+++ +|.+..+++ .++.+++|++|++.++. ... .++.+++|+.|+
T Consensus 117 ~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~ 192 (390)
T 3o6n_A 117 PLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMS-NNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHAN 192 (390)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC-SSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEE
T ss_pred CCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECC-CCccCccChhhccCCCCCCEEECCCCcCCcc--ccccccccceee
Confidence 999999999 8 89999987 4889999999999 998766654 58999999999999887 221 133344444444
Q ss_pred Eeec
Q 037494 294 ISGD 297 (394)
Q Consensus 294 l~~~ 297 (394)
++++
T Consensus 193 l~~n 196 (390)
T 3o6n_A 193 VSYN 196 (390)
T ss_dssp CCSS
T ss_pred cccc
Confidence 4443
No 30
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.86 E-value=1.3e-21 Score=202.11 Aligned_cols=125 Identities=13% Similarity=0.167 Sum_probs=74.4
Q ss_pred CCceEEEEEEeCC-cch--hhcc--------CCCCCccEEEEecCCCccchhcchhH--HhccCCceeEEEcCCCCCCCC
Q 037494 121 LATVKRCFILEDL-IEF--ISLE--------QSDMYLQSFLNHSSESDHLALIDCEN--FCENFKYLRVLNWGSAVLDQF 187 (394)
Q Consensus 121 ~~~~r~L~l~~~~-~~~--~~~~--------~~~~~lr~L~l~~~~~~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~l 187 (394)
..+++.|.+..+. ... +|.. ..+++|+.|.+.++... .+|. .+.++++|++|++++|.+..+
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-----~ip~~~~l~~L~~L~~L~Ls~N~l~~l 588 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-----EFPASASLQKMVKLGLLDCVHNKVRHL 588 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-----BCCCHHHHTTCTTCCEEECTTSCCCBC
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-----ccCChhhhhcCCCCCEEECCCCCcccc
Confidence 4466666666443 332 3321 23446777777666654 3433 336667777777777766666
Q ss_pred cccccCcccccEEecCCCCCccccccccCCCC-CcEEEcc-cCCccccchhhccCcc--CcEEEeeCCCC
Q 037494 188 PPGLENLFLLKYLQLNIPTLKCLPLLICTLLN-LETLEMP-AGYIDHSPEGIWMMQK--LMHLNFDSITL 253 (394)
Q Consensus 188 p~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~-L~~L~l~-~~~l~~lp~~i~~l~~--L~~L~l~~~~~ 253 (394)
| .++.+++|+.|++++|.+..+|..++++++ |++|+++ | .+..+|..+..+.. |+.|+++ +|.
T Consensus 589 p-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N-~L~~lp~~~~~~~~~~L~~L~Ls-~N~ 655 (876)
T 4ecn_A 589 E-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDFS-YNK 655 (876)
T ss_dssp C-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSS-CCCSCCSCCCTTCSSCEEEEECC-SSC
T ss_pred h-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCC-CCCcCchhhhccccCCCCEEECc-CCc
Confidence 6 666666777777766666666666666666 6666666 6 55566655444432 5555555 554
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.86 E-value=2.9e-21 Score=188.04 Aligned_cols=250 Identities=18% Similarity=0.157 Sum_probs=145.6
Q ss_pred CCceEEEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEE
Q 037494 121 LATVKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYL 200 (394)
Q Consensus 121 ~~~~r~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 200 (394)
...+++|.+..+....++....+++|+.|.+.++... .++.+ .++++|++|++++|.+..++. ++.+++|++|
T Consensus 67 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~-~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L 139 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIA-----DITPL-ANLTNLTGLTLFNNQITDIDP-LKNLTNLNRL 139 (466)
T ss_dssp CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC-----CCGGG-TTCTTCCEEECCSSCCCCCGG-GTTCTTCSEE
T ss_pred hcCCCEEECCCCccCCchhhhccccCCEEECCCCccc-----cChhh-cCCCCCCEEECCCCCCCCChH-HcCCCCCCEE
Confidence 5567777777666666555667777888887777665 23333 777777777777777776655 6777777777
Q ss_pred ecCCCCCccccc--------------------cccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCC
Q 037494 201 QLNIPTLKCLPL--------------------LICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKN 259 (394)
Q Consensus 201 ~l~~~~l~~lp~--------------------~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~ 259 (394)
++++|.+..+|. .++++++|++|+++ | .+..++ .+..+++|++|+++ +|.....++
T Consensus 140 ~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~-~n~l~~~~~ 216 (466)
T 1o6v_A 140 ELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN-KVSDIS-VLAKLTNLESLIAT-NNQISDITP 216 (466)
T ss_dssp EEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECC-SSCCCCCGG
T ss_pred ECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCC-cCCCCh-hhccCCCCCEEEec-CCccccccc
Confidence 777766554431 24455666667776 6 555554 36666677777776 666544443
Q ss_pred CCCCCCcCceeCccccCCCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCC----------------
Q 037494 260 YSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNG---------------- 323 (394)
Q Consensus 260 ~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~---------------- 323 (394)
++.+++|++|++.++.......+..+++|+.|++++|. ... .+. +..+++|+.|+++++
T Consensus 217 -~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~--l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~ 291 (466)
T 1o6v_A 217 -LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ--ISN-LAP-LSGLTKLTELKLGANQISNISPLAGLTALTN 291 (466)
T ss_dssp -GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC--CCC-CGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSE
T ss_pred -ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCc--ccc-chh-hhcCCCCCEEECCCCccCccccccCCCccCe
Confidence 55566666666666552223445556666666666654 221 121 455555666665551
Q ss_pred -----CCCCccCCCCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccccCceeEEeCCCCCcCCccc
Q 037494 324 -----SKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQVL 393 (394)
Q Consensus 324 -----~~L~~L~p~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~fp~L~~L 393 (394)
+.+..+ |.+.. +++|+.|++++|++.... .++.+++|+.|++++|.+.+.. . ...+++|+.|
T Consensus 292 L~L~~n~l~~~-~~~~~-l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~---~-l~~l~~L~~L 358 (466)
T 1o6v_A 292 LELNENQLEDI-SPISN-LKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFYNNKVSDVS---S-LANLTNINWL 358 (466)
T ss_dssp EECCSSCCSCC-GGGGG-CTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCCCG---G-GTTCTTCCEE
T ss_pred EEcCCCcccCc-hhhcC-CCCCCEEECcCCcCCCch--hhccCccCCEeECCCCccCCch---h-hccCCCCCEE
Confidence 223222 22333 556666666666653322 2556666666666666555432 1 2345555554
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=6.7e-21 Score=184.66 Aligned_cols=239 Identities=15% Similarity=0.102 Sum_probs=167.9
Q ss_pred CCceEEEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEE
Q 037494 121 LATVKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYL 200 (394)
Q Consensus 121 ~~~~r~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 200 (394)
...+++|.+..+....++....+++|+.|.+.++.... ++ + ..+++|++|++++|.++.++ ++.+++|++|
T Consensus 41 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~-----~~-~-~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITT-----LD-L-SQNTNLTYLACDSNKLTNLD--VTPLTKLTYL 111 (457)
T ss_dssp HTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSC-----CC-C-TTCTTCSEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred cCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCe-----Ec-c-ccCCCCCEEECcCCCCceee--cCCCCcCCEE
Confidence 45677888776666666655677888888888887763 22 3 77888888888888887764 7788888888
Q ss_pred ecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCC-CCCCCCCCCCCCcCceeCccccC-C
Q 037494 201 QLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITL-PAPPKNYSSSLKNLIFISALHPS-S 277 (394)
Q Consensus 201 ~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~-~~~~p~~l~~l~~L~~L~~~~~~-~ 277 (394)
++++|.+..+| ++.+++|++|+++ | .+..+| ++.+++|++|+++ +|. ...+ .++.+++|+.|++..+. .
T Consensus 112 ~L~~N~l~~l~--~~~l~~L~~L~l~~N-~l~~l~--l~~l~~L~~L~l~-~n~~~~~~--~~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 112 NCDTNKLTKLD--VSQNPLLTYLNCARN-TLTEID--VSHNTQLTELDCH-LNKKITKL--DVTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp ECCSSCCSCCC--CTTCTTCCEEECTTS-CCSCCC--CTTCTTCCEEECT-TCSCCCCC--CCTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCeec--CCCCCcCCEEECCCC-ccceec--cccCCcCCEEECC-CCCccccc--ccccCCcCCEEECCCCccc
Confidence 88888887775 7788888888888 7 777764 6778888888888 774 4444 46778888888888777 3
Q ss_pred CcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCCCCCCCCCCceEEEEecccCCCCCccc
Q 037494 278 CTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPM 357 (394)
Q Consensus 278 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p~~~~~l~~L~~L~L~~~~l~~~~~~~ 357 (394)
..+ ++.+++|+.|++++|. .. .+ .++.+++|+.|++++ +++..+ | +.. +++|+.|++++|++...++
T Consensus 184 ~l~--l~~l~~L~~L~l~~N~--l~-~~--~l~~l~~L~~L~Ls~-N~l~~i-p-~~~-l~~L~~L~l~~N~l~~~~~-- 250 (457)
T 3bz5_A 184 ELD--VSQNKLLNRLNCDTNN--IT-KL--DLNQNIQLTFLDCSS-NKLTEI-D-VTP-LTQLTYFDCSVNPLTELDV-- 250 (457)
T ss_dssp CCC--CTTCTTCCEEECCSSC--CS-CC--CCTTCTTCSEEECCS-SCCSCC-C-CTT-CTTCSEEECCSSCCSCCCC--
T ss_pred eec--cccCCCCCEEECcCCc--CC-ee--ccccCCCCCEEECcC-Cccccc-C-ccc-cCCCCEEEeeCCcCCCcCH--
Confidence 332 7778888888888875 22 22 367778888888887 667777 6 556 7888888888888766543
Q ss_pred ccCCCCCCeEEE----------ecccccCceeEEeCCCCCcCCcccC
Q 037494 358 LERLPRLQVMKL----------KRNSYFGRKLACVGSGGFPELQVLT 394 (394)
Q Consensus 358 l~~l~~L~~L~l----------~~n~~~~~~~~~~~~~~fp~L~~L~ 394 (394)
+.+++|+.|++ ++|...+.. . .+.+++|+.|+
T Consensus 251 -~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~---~-~~~l~~L~~L~ 292 (457)
T 3bz5_A 251 -STLSKLTTLHCIQTDLLEIDLTHNTQLIYF---Q-AEGCRKIKELD 292 (457)
T ss_dssp -TTCTTCCEEECTTCCCSCCCCTTCTTCCEE---E-CTTCTTCCCCC
T ss_pred -HHCCCCCEEeccCCCCCEEECCCCccCCcc---c-ccccccCCEEE
Confidence 34454544444 333333222 2 34677787764
No 33
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.86 E-value=1.4e-21 Score=196.45 Aligned_cols=245 Identities=18% Similarity=0.177 Sum_probs=148.0
Q ss_pred CceEEEEEEeCCcchhhcc-CCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCC-CCc-ccccCccccc
Q 037494 122 ATVKRCFILEDLIEFISLE-QSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLD-QFP-PGLENLFLLK 198 (394)
Q Consensus 122 ~~~r~L~l~~~~~~~~~~~-~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-~lp-~~i~~l~~L~ 198 (394)
.+++.|.+..+....+|.. ..+++|+.|.+.++.... ..+..+..+++|++|++++|.+. .+| ..++.+++|+
T Consensus 278 ~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 353 (606)
T 3t6q_A 278 SGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFEN----LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353 (606)
T ss_dssp TTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSB----GGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred cCCCEEeccCCccCCCChhhcccccCCEEECccCCcCc----CchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence 3455555554444444333 445555566555555441 11223356666666666666554 443 2356666666
Q ss_pred EEecCCCCCccc---cccccCCCCCcEEEcc-cCCcccc-chhhccCccCcEEEeeCCCCCCCC-CC-CCCCCCcCceeC
Q 037494 199 YLQLNIPTLKCL---PLLICTLLNLETLEMP-AGYIDHS-PEGIWMMQKLMHLNFDSITLPAPP-KN-YSSSLKNLIFIS 271 (394)
Q Consensus 199 ~L~l~~~~l~~l---p~~l~~l~~L~~L~l~-~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~-p~-~l~~l~~L~~L~ 271 (394)
+|++++|.+... |..++.+++|++|+++ | .+..+ |..+..+++|++|+++ +|..... |+ .++.+++|++|+
T Consensus 354 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~~l~~L~~L~ 431 (606)
T 3t6q_A 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTEAFKECPQLELLDLA-FTRLKVKDAQSPFQNLHLLKVLN 431 (606)
T ss_dssp EEECCSSCCCEEEESTTTTTTCTTCCEEECCSC-SCEEECTTTTTTCTTCSEEECT-TCCEECCTTCCTTTTCTTCCEEE
T ss_pred EEECCCCccccccCcchhcccCCCCCEEECCCC-cCCcCCHHHhcCCccCCeEECC-CCcCCCcccchhhhCcccCCEEE
Confidence 666666666544 4456666677777776 6 44443 3456666777777776 6663322 22 266677777777
Q ss_pred ccccC--CCcchhcCCCCCCCeEEEeecCCcccc---chhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEE
Q 037494 272 ALHPS--SCTPDILSRLPTVQTLRISGDLSHYHS---GVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSL 345 (394)
Q Consensus 272 ~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~---~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L 345 (394)
+.++. ...+..++.+++|+.|++++|. ..+ ..+..+..+++|+.|++++ +.+..+.| ++.. +++|+.|+|
T Consensus 432 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~-l~~L~~L~L 507 (606)
T 3t6q_A 432 LSHSLLDISSEQLFDGLPALQHLNLQGNH--FPKGNIQKTNSLQTLGRLEILVLSF-CDLSSIDQHAFTS-LKMMNHVDL 507 (606)
T ss_dssp CTTCCCBTTCTTTTTTCTTCCEEECTTCB--CGGGEECSSCGGGGCTTCCEEECTT-SCCCEECTTTTTT-CTTCCEEEC
T ss_pred CCCCccCCcCHHHHhCCCCCCEEECCCCC--CCccccccchhhccCCCccEEECCC-CccCccChhhhcc-ccCCCEEEC
Confidence 76666 3345556667777777777765 322 1224566677777777776 45555534 6777 788888888
Q ss_pred ecccCCCCCcccccCCCCCCeEEEecccccCc
Q 037494 346 SNTELMEDPMPMLERLPRLQVMKLKRNSYFGR 377 (394)
Q Consensus 346 ~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 377 (394)
++|++....+..++++++| +|++++|.+++.
T Consensus 508 s~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~ 538 (606)
T 3t6q_A 508 SHNRLTSSSIEALSHLKGI-YLNLASNHISII 538 (606)
T ss_dssp CSSCCCGGGGGGGTTCCSC-EEECCSSCCCCC
T ss_pred CCCccCcCChhHhCccccc-EEECcCCccccc
Confidence 8888776666777788888 888877777654
No 34
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=2.5e-21 Score=191.12 Aligned_cols=124 Identities=11% Similarity=0.019 Sum_probs=85.3
Q ss_pred CCceEEEEEEeCCcchhhc--cCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCccccc
Q 037494 121 LATVKRCFILEDLIEFISL--EQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLK 198 (394)
Q Consensus 121 ~~~~r~L~l~~~~~~~~~~--~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~ 198 (394)
+..+++|.+..+....++. ...+++|++|.+.++.... ..++.|.++++|++|++++|.++.+|.. .+++|+
T Consensus 20 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~ 93 (520)
T 2z7x_B 20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY----LDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLK 93 (520)
T ss_dssp CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCE----EEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCS
T ss_pred cccccEEECCCCcccccChhhccccccccEEecCCCccCC----cChHHhhcccCCCEEecCCCceeecCcc--ccCCcc
Confidence 3567777777665555542 2667778888877777652 1144447778888888888877777765 677788
Q ss_pred EEecCCCCCcc--ccccccCCCCCcEEEcc-cCCccccchhhccCccC--cEEEeeCCCCC
Q 037494 199 YLQLNIPTLKC--LPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKL--MHLNFDSITLP 254 (394)
Q Consensus 199 ~L~l~~~~l~~--lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L--~~L~l~~~~~~ 254 (394)
+|++++|.+.. +|..++++++|++|+++ | .+.. ..+..+++| ++|+++ +|..
T Consensus 94 ~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n-~l~~--~~~~~l~~L~L~~L~l~-~n~l 150 (520)
T 2z7x_B 94 HLDLSFNAFDALPICKEFGNMSQLKFLGLSTT-HLEK--SSVLPIAHLNISKVLLV-LGET 150 (520)
T ss_dssp EEECCSSCCSSCCCCGGGGGCTTCCEEEEEES-SCCG--GGGGGGTTSCEEEEEEE-ECTT
T ss_pred EEeccCCccccccchhhhccCCcceEEEecCc-ccch--hhccccccceeeEEEee-cccc
Confidence 88888877764 45677778888888887 6 5554 346666777 888877 6654
No 35
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=1.3e-21 Score=183.54 Aligned_cols=221 Identities=19% Similarity=0.132 Sum_probs=139.9
Q ss_pred CCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCC-cccccCcccccEEecCCCCCcccccc-ccCCCCC
Q 037494 144 MYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQF-PPGLENLFLLKYLQLNIPTLKCLPLL-ICTLLNL 220 (394)
Q Consensus 144 ~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L 220 (394)
++++.|.+.++... .+ +..|.++++|++|++++|.++.+ |..++++++|++|++++|.++.+|.. ++++++|
T Consensus 52 ~~L~~L~l~~n~i~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 126 (353)
T 2z80_A 52 EAVKSLDLSNNRIT-----YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSL 126 (353)
T ss_dssp TTCCEEECTTSCCC-----EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTC
T ss_pred ccCcEEECCCCcCc-----ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccC
Confidence 46677776666654 22 22236667777777777766654 34566677777777777777666655 5667777
Q ss_pred cEEEcc-cCCccccch--hhccCccCcEEEeeCCCC-CCCCC-CCCCCCCcCceeCccccC--CCcchhcCCCCCCCeEE
Q 037494 221 ETLEMP-AGYIDHSPE--GIWMMQKLMHLNFDSITL-PAPPK-NYSSSLKNLIFISALHPS--SCTPDILSRLPTVQTLR 293 (394)
Q Consensus 221 ~~L~l~-~~~l~~lp~--~i~~l~~L~~L~l~~~~~-~~~~p-~~l~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~ 293 (394)
++|+++ | .+..+|. .+..+++|++|+++ +|. ...++ ..++.+++|++|++.++. ...+..++.+++|+.|+
T Consensus 127 ~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~-~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 204 (353)
T 2z80_A 127 TFLNLLGN-PYKTLGETSLFSHLTKLQILRVG-NMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLI 204 (353)
T ss_dssp SEEECTTC-CCSSSCSSCSCTTCTTCCEEEEE-ESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred CEEECCCC-CCcccCchhhhccCCCCcEEECC-CCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeec
Confidence 777777 6 6666665 46667777777776 653 44443 346666777777766665 23345666666777777
Q ss_pred EeecCCccccchhhh-hcCCCCCcEEEecCCCCCCccC-------------------------------C-CCCCCCCCc
Q 037494 294 ISGDLSHYHSGVSKS-LCELHKLECLKLVNGSKLSRMV-------------------------------L-SEYQFPPSL 340 (394)
Q Consensus 294 l~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~L~~L~-------------------------------p-~~~~~l~~L 340 (394)
++++. ...++.. +..+++|+.|++++ +.+..+. | ++.. +++|
T Consensus 205 l~~n~---l~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~-l~~L 279 (353)
T 2z80_A 205 LHMKQ---HILLLEIFVDVTSSVECLELRD-TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ-ISGL 279 (353)
T ss_dssp EECSC---STTHHHHHHHHTTTEEEEEEES-CBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHT-CTTC
T ss_pred CCCCc---cccchhhhhhhcccccEEECCC-CccccccccccccccccchhhccccccccccCcchhhhHHHHhc-ccCC
Confidence 76664 2333332 33466677777666 2222210 4 4556 7889
Q ss_pred eEEEEecccCCCCCcccccCCCCCCeEEEecccccC
Q 037494 341 IQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFG 376 (394)
Q Consensus 341 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 376 (394)
+.|++++|+++..+...++.+++|++|++++|.+.+
T Consensus 280 ~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 280 LELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 999999998875544446888899999998887654
No 36
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=2.9e-21 Score=190.65 Aligned_cols=121 Identities=14% Similarity=0.034 Sum_probs=85.2
Q ss_pred EEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCC-cccccCcccccEEecCC
Q 037494 126 RCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQF-PPGLENLFLLKYLQLNI 204 (394)
Q Consensus 126 ~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~ 204 (394)
++.+..+....+|.... ++++.|.+.++.... ..++.|..+++|++|++++|.++.+ |..++++++|++|++++
T Consensus 4 ~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 4 LVDRSKNGLIHVPKDLS-QKTTILNISQNYISE----LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp EEECTTSCCSSCCCSCC-TTCSEEECCSSCCCC----CCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred eEecCCCCccccccccc-ccccEEECCCCcccc----cChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 34444444455554432 778888888877652 1133447888888888888887765 56788888888888888
Q ss_pred CCCccccccccCCCCCcEEEcc-cCCccc--cchhhccCccCcEEEeeCCCCCC
Q 037494 205 PTLKCLPLLICTLLNLETLEMP-AGYIDH--SPEGIWMMQKLMHLNFDSITLPA 255 (394)
Q Consensus 205 ~~l~~lp~~l~~l~~L~~L~l~-~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~ 255 (394)
|.++.+|.. .+++|++|+++ | .+.. +|..++.+++|++|+++ +|.+.
T Consensus 79 N~l~~lp~~--~l~~L~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~-~n~l~ 128 (520)
T 2z7x_B 79 NKLVKISCH--PTVNLKHLDLSFN-AFDALPICKEFGNMSQLKFLGLS-TTHLE 128 (520)
T ss_dssp SCCCEEECC--CCCCCSEEECCSS-CCSSCCCCGGGGGCTTCCEEEEE-ESSCC
T ss_pred CceeecCcc--ccCCccEEeccCC-ccccccchhhhccCCcceEEEec-Ccccc
Confidence 888888766 78888888888 7 6654 46778888888888888 76643
No 37
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.85 E-value=1.1e-20 Score=171.93 Aligned_cols=199 Identities=19% Similarity=0.213 Sum_probs=113.9
Q ss_pred CceeEEEcCCCCCCCCc-ccccCcccccEEecCCCCCccc-cccccCCCCCcEEEcc-cCCcccc-chhhccCccCcEEE
Q 037494 172 KYLRVLNWGSAVLDQFP-PGLENLFLLKYLQLNIPTLKCL-PLLICTLLNLETLEMP-AGYIDHS-PEGIWMMQKLMHLN 247 (394)
Q Consensus 172 ~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~-~~~l~~l-p~~i~~l~~L~~L~ 247 (394)
++|++|+++++.+..++ ..+..+++|++|++++|.+..+ |..++.+++|++|+++ |..+..+ |..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 45566666666665544 3455666666666666665554 4455566666666666 5225555 34455666666666
Q ss_pred eeCCCCCCCC-CCCCCCCCcCceeCccccC-CCcc-hhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCC
Q 037494 248 FDSITLPAPP-KNYSSSLKNLIFISALHPS-SCTP-DILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGS 324 (394)
Q Consensus 248 l~~~~~~~~~-p~~l~~l~~L~~L~~~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 324 (394)
++ +|.+..+ |..++.+++|++|++.++. ...+ ..++.+++|+.|++++|. .....+..+..+++|+.|++++ +
T Consensus 112 l~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~-n 187 (285)
T 1ozn_A 112 LD-RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR--ISSVPERAFRGLHSLDRLLLHQ-N 187 (285)
T ss_dssp CT-TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCS-S
T ss_pred CC-CCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc--ccccCHHHhcCccccCEEECCC-C
Confidence 66 5554444 3335556666666666555 2222 335566666666666664 2222223455666666666666 4
Q ss_pred CCCccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEeccccc
Q 037494 325 KLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYF 375 (394)
Q Consensus 325 ~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~ 375 (394)
.+..+.| ++.. +++|+.|++++|++...+...+..+++|+.|++++|.+.
T Consensus 188 ~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 188 RVAHVHPHAFRD-LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CCCEECTTTTTT-CTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cccccCHhHccC-cccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 4544434 5666 667777777777666555555666777777777666543
No 38
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=5e-21 Score=190.78 Aligned_cols=78 Identities=19% Similarity=0.209 Sum_probs=37.0
Q ss_pred ccCCceeEEEcCCCCCCCC-cccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccc--hhhccCccCc
Q 037494 169 ENFKYLRVLNWGSAVLDQF-PPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSP--EGIWMMQKLM 244 (394)
Q Consensus 169 ~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp--~~i~~l~~L~ 244 (394)
.++++|++|++++|.++.+ |..++.+++|++|++++|.++.+|.. .+++|++|+++ | .+..+| ..++++++|+
T Consensus 73 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~ 149 (562)
T 3a79_B 73 SFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLT 149 (562)
T ss_dssp TTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCC
T ss_pred ccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCC-CccccCchHhhcccCccc
Confidence 4445555555555544433 34444455555555555554444443 44455555555 4 443332 3444444444
Q ss_pred EEEee
Q 037494 245 HLNFD 249 (394)
Q Consensus 245 ~L~l~ 249 (394)
+|+++
T Consensus 150 ~L~L~ 154 (562)
T 3a79_B 150 FLGLS 154 (562)
T ss_dssp EEEEE
T ss_pred EEecC
Confidence 44444
No 39
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.85 E-value=1.5e-20 Score=195.84 Aligned_cols=261 Identities=22% Similarity=0.175 Sum_probs=173.9
Q ss_pred CCceEEEEEEeCCcchhhcc--CCCCCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCC-cccccCccc
Q 037494 121 LATVKRCFILEDLIEFISLE--QSDMYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQF-PPGLENLFL 196 (394)
Q Consensus 121 ~~~~r~L~l~~~~~~~~~~~--~~~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~ 196 (394)
+..+++|.+..+....+... ..+++|+.|.+.++.... .+ +..|.++++|++|++++|.+..+ |..++++++
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~----~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~ 98 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL----TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH 98 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCC----EECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSS
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCcc----ccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcc
Confidence 67889999997776665432 789999999999885432 33 44459999999999999998865 788999999
Q ss_pred ccEEecCCCCCcc-cccc--ccCCCCCcEEEcc-cCCccccc--hhhccCccCcEEEeeCCCCCCC-CCCCCCCC--CcC
Q 037494 197 LKYLQLNIPTLKC-LPLL--ICTLLNLETLEMP-AGYIDHSP--EGIWMMQKLMHLNFDSITLPAP-PKNYSSSL--KNL 267 (394)
Q Consensus 197 L~~L~l~~~~l~~-lp~~--l~~l~~L~~L~l~-~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~-~p~~l~~l--~~L 267 (394)
|++|++++|.+.. +|.. ++++++|++|+++ | .+..++ ..++++++|++|+++ +|.+.. .|..++.+ ++|
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls-~N~i~~~~~~~l~~l~~~~L 176 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFS-SNQIFLVCEHELEPLQGKTL 176 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEE-SSCCCCCCSGGGHHHHHCSS
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECC-CCcCCeeCHHHcccccCCcc
Confidence 9999999998875 5554 8899999999999 8 666653 468899999999999 877433 23333333 344
Q ss_pred ceeCccccC--CCcchhcCCC-----------------------------------------------------------
Q 037494 268 IFISALHPS--SCTPDILSRL----------------------------------------------------------- 286 (394)
Q Consensus 268 ~~L~~~~~~--~~~~~~l~~l----------------------------------------------------------- 286 (394)
+.|.+..+. ...+..++.+
T Consensus 177 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~ 256 (844)
T 3j0a_A 177 SFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPD 256 (844)
T ss_dssp CCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGG
T ss_pred ceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCC
Confidence 444443333 1111111211
Q ss_pred ---------CCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcc
Q 037494 287 ---------PTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMP 356 (394)
Q Consensus 287 ---------~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~ 356 (394)
++|+.|++++|. .....+..+..+++|+.|++++ +++..+.| .+.. +++|+.|+|++|++....+.
T Consensus 257 ~~~f~~l~~~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~ 332 (844)
T 3j0a_A 257 QNTFAGLARSSVRHLDLSHGF--VFSLNSRVFETLKDLKVLNLAY-NKINKIADEAFYG-LDNLQVLNLSYNLLGELYSS 332 (844)
T ss_dssp GTTTTTTTTSCCCEEECTTCC--CCEECSCCSSSCCCCCEEEEES-CCCCEECTTTTTT-CSSCCEEEEESCCCSCCCSC
T ss_pred hhhhhccccCCccEEECCCCc--ccccChhhhhcCCCCCEEECCC-CcCCCCChHHhcC-CCCCCEEECCCCCCCccCHH
Confidence 345555555554 3333344555666666666665 44555524 6666 77788888888877666566
Q ss_pred cccCCCCCCeEEEecccccCceeEEeCCCCCcCCccc
Q 037494 357 MLERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQVL 393 (394)
Q Consensus 357 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~fp~L~~L 393 (394)
.++.+++|+.|++++|.+...... . ...+++|+.|
T Consensus 333 ~~~~l~~L~~L~L~~N~i~~~~~~-~-~~~l~~L~~L 367 (844)
T 3j0a_A 333 NFYGLPKVAYIDLQKNHIAIIQDQ-T-FKFLEKLQTL 367 (844)
T ss_dssp SCSSCTTCCEEECCSCCCCCCCSS-C-SCSCCCCCEE
T ss_pred HhcCCCCCCEEECCCCCCCccChh-h-hcCCCCCCEE
Confidence 777788888888877766543311 0 2345666655
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.85 E-value=2.5e-20 Score=180.69 Aligned_cols=228 Identities=15% Similarity=0.131 Sum_probs=126.5
Q ss_pred CCceEEEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEE
Q 037494 121 LATVKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYL 200 (394)
Q Consensus 121 ~~~~r~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 200 (394)
...+++|.+..+....++ ...+++|+.|.+.++.... ++ + ..+++|++|++++|.++.+| ++.+++|++|
T Consensus 63 l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~-----~~-~-~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L 132 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTN-----LD-V-TPLTKLTYLNCDTNKLTKLD--VSQNPLLTYL 132 (457)
T ss_dssp CTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSC-----CC-C-TTCTTCCEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred cCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCce-----ee-c-CCCCcCCEEECCCCcCCeec--CCCCCcCCEE
Confidence 455666666655444443 3456666666666666542 12 3 66666666666666666654 6666666666
Q ss_pred ecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccCCCc
Q 037494 201 QLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPSSCT 279 (394)
Q Consensus 201 ~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~ 279 (394)
++++|.++.+| ++.+++|++|+++ |..+..+ .++.+++|++|+++ +|.+..+| ++.+++|+.|.+..+....
T Consensus 133 ~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls-~n~l~~l~--l~~l~~L~~L~l~~N~l~~ 205 (457)
T 3bz5_A 133 NCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCS-FNKITELD--VSQNKLLNRLNCDTNNITK 205 (457)
T ss_dssp ECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECC-SSCCCCCC--CTTCTTCCEEECCSSCCSC
T ss_pred ECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECC-CCccceec--cccCCCCCEEECcCCcCCe
Confidence 66666666653 5566666666666 5444444 25566666666666 66655554 5666666666666665111
Q ss_pred chhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCCCCCCCCCCceEEEEecccCCCCCc----
Q 037494 280 PDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLIQLSLSNTELMEDPM---- 355 (394)
Q Consensus 280 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p~~~~~l~~L~~L~L~~~~l~~~~~---- 355 (394)
. .++.+++|+.|++++|. . ..+| +..+++|+.|++++ +.+..+ | +.. +++|+.|+++.+++....+
T Consensus 206 ~-~l~~l~~L~~L~Ls~N~--l-~~ip--~~~l~~L~~L~l~~-N~l~~~-~-~~~-l~~L~~L~l~~n~L~~L~l~~n~ 275 (457)
T 3bz5_A 206 L-DLNQNIQLTFLDCSSNK--L-TEID--VTPLTQLTYFDCSV-NPLTEL-D-VST-LSKLTTLHCIQTDLLEIDLTHNT 275 (457)
T ss_dssp C-CCTTCTTCSEEECCSSC--C-SCCC--CTTCTTCSEEECCS-SCCSCC-C-CTT-CTTCCEEECTTCCCSCCCCTTCT
T ss_pred e-ccccCCCCCEEECcCCc--c-cccC--ccccCCCCEEEeeC-CcCCCc-C-HHH-CCCCCEEeccCCCCCEEECCCCc
Confidence 1 35666666666666664 2 2233 55666666666666 445544 3 222 3333333333333222111
Q ss_pred ----ccccCCCCCCeEEEeccccc
Q 037494 356 ----PMLERLPRLQVMKLKRNSYF 375 (394)
Q Consensus 356 ----~~l~~l~~L~~L~l~~n~~~ 375 (394)
-.++.+++|+.|++++|...
T Consensus 276 ~~~~~~~~~l~~L~~L~Ls~n~~l 299 (457)
T 3bz5_A 276 QLIYFQAEGCRKIKELDVTHNTQL 299 (457)
T ss_dssp TCCEEECTTCTTCCCCCCTTCTTC
T ss_pred cCCcccccccccCCEEECCCCccc
Confidence 11345666666666655543
No 41
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.85 E-value=4.1e-21 Score=193.09 Aligned_cols=242 Identities=16% Similarity=0.098 Sum_probs=204.8
Q ss_pred CCceEEEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCC---cccccCcccc
Q 037494 121 LATVKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQF---PPGLENLFLL 197 (394)
Q Consensus 121 ~~~~r~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l---p~~i~~l~~L 197 (394)
..+++.+.+..+....++.. .+++|+.|.+.++.... . ..+ ..+++|++|++++|.++.. |..++.+++|
T Consensus 306 ~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~~----~-~~~-~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L 378 (606)
T 3vq2_A 306 HFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSI----S-FKK-VALPSLSYLDLSRNALSFSGCCSYSDLGTNSL 378 (606)
T ss_dssp TCCCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSSCE----E-CCC-CCCTTCCEEECCSSCEEEEEECCHHHHCCSCC
T ss_pred cccCCEEEcccccCcccccC-CCCccceeeccCCcCcc----c-hhh-ccCCCCCEEECcCCccCCCcchhhhhccCCcc
Confidence 56899999997777777755 89999999999995542 1 133 7899999999999998855 7888999999
Q ss_pred cEEecCCCCCccccccccCCCCCcEEEcc-cCCccccch--hhccCccCcEEEeeCCCCCC-CCCCCCCCCCcCceeCcc
Q 037494 198 KYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPE--GIWMMQKLMHLNFDSITLPA-PPKNYSSSLKNLIFISAL 273 (394)
Q Consensus 198 ~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L~~~ 273 (394)
++|++++|.+..+|..++.+++|++|+++ | .+...++ .+..+++|++|+++ +|... ..|..++.+++|++|++.
T Consensus 379 ~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~ 456 (606)
T 3vq2_A 379 RHLDLSFNGAIIMSANFMGLEELQHLDFQHS-TLKRVTEFSAFLSLEKLLYLDIS-YTNTKIDFDGIFLGLTSLNTLKMA 456 (606)
T ss_dssp CEEECCSCSEEEECCCCTTCTTCCEEECTTS-EEESTTTTTTTTTCTTCCEEECT-TSCCEECCTTTTTTCTTCCEEECT
T ss_pred cEeECCCCccccchhhccCCCCCCeeECCCC-ccCCccChhhhhccccCCEEECc-CCCCCccchhhhcCCCCCCEEECC
Confidence 99999999999999999999999999999 8 7766654 78899999999999 99844 456779999999999999
Q ss_pred ccC-C--CcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEeccc
Q 037494 274 HPS-S--CTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTE 349 (394)
Q Consensus 274 ~~~-~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~ 349 (394)
++. . ..+..++.+++|+.|++++|. ..+..|..+..+++|+.|++++ +++..+.| ++.. +++|+.|+|++|+
T Consensus 457 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~-l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 457 GNSFKDNTLSNVFANTTNLTFLDLSKCQ--LEQISWGVFDTLHRLQLLNMSH-NNLLFLDSSHYNQ-LYSLSTLDCSFNR 532 (606)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTSC--CCEECTTTTTTCTTCCEEECCS-SCCSCEEGGGTTT-CTTCCEEECTTSC
T ss_pred CCcCCCcchHHhhccCCCCCEEECCCCc--CCccChhhhcccccCCEEECCC-CcCCCcCHHHccC-CCcCCEEECCCCc
Confidence 988 3 367789999999999999997 6666678899999999999998 56666646 8888 9999999999999
Q ss_pred CCCCCcccccCCC-CCCeEEEecccccC
Q 037494 350 LMEDPMPMLERLP-RLQVMKLKRNSYFG 376 (394)
Q Consensus 350 l~~~~~~~l~~l~-~L~~L~l~~n~~~~ 376 (394)
++. .++.+..++ +|+.|++++|.+..
T Consensus 533 l~~-~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 533 IET-SKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp CCC-EESCGGGSCTTCCEEECCSCCCCC
T ss_pred Ccc-cCHhHhhhcccCcEEEccCCCccc
Confidence 864 444588887 69999999987653
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=7e-21 Score=191.00 Aligned_cols=148 Identities=13% Similarity=0.133 Sum_probs=120.1
Q ss_pred CCCCCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCCc-ccccCcccccEEecCCCCCcccccc-ccCC
Q 037494 141 QSDMYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQFP-PGLENLFLLKYLQLNIPTLKCLPLL-ICTL 217 (394)
Q Consensus 141 ~~~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~lp~~-l~~l 217 (394)
..+++++.+.+.++... .+ +.+|..+++|++|++++|.+..++ ..++.+++|++|++++|.+..+|+. ++++
T Consensus 48 l~l~~l~~l~l~~~~l~-----~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 122 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMR-----KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 122 (597)
T ss_dssp GGGCCCSEEEESSCEES-----EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ccCCCceEEEeeCCCCC-----CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCC
Confidence 45678999999888765 34 556699999999999999999776 5899999999999999999988765 6899
Q ss_pred CCCcEEEcc-cCCccccchh-hccCccCcEEEeeCCCCCCCCCC-CCCCCCcCceeCccccC-CCcchhcCCCCCCCeEE
Q 037494 218 LNLETLEMP-AGYIDHSPEG-IWMMQKLMHLNFDSITLPAPPKN-YSSSLKNLIFISALHPS-SCTPDILSRLPTVQTLR 293 (394)
Q Consensus 218 ~~L~~L~l~-~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~ 293 (394)
++|++|+++ | .+..+|.. ++.+++|++|+++ +|.+..+++ .++.+++|++|++.++. ... .++.+++|+.|+
T Consensus 123 ~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~l~~L~~L~ 198 (597)
T 3oja_B 123 PLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMS-NNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHAN 198 (597)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC-SSCCCBCCTTTTTTCTTCCEEECTTSCCSBC--CGGGCTTCSEEE
T ss_pred CCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEee-CCcCCCCChhhhhcCCcCcEEECcCCCCCCc--Chhhhhhhhhhh
Confidence 999999999 8 89999976 5899999999999 998666655 68999999999999887 222 133344555544
Q ss_pred Eeec
Q 037494 294 ISGD 297 (394)
Q Consensus 294 l~~~ 297 (394)
+++|
T Consensus 199 l~~n 202 (597)
T 3oja_B 199 VSYN 202 (597)
T ss_dssp CCSS
T ss_pred cccC
Confidence 4444
No 43
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.84 E-value=2.2e-20 Score=186.16 Aligned_cols=103 Identities=15% Similarity=0.055 Sum_probs=84.2
Q ss_pred CCceEEEEEEeCCcchhhc--cCCCCCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCCcccccCcccc
Q 037494 121 LATVKRCFILEDLIEFISL--EQSDMYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQFPPGLENLFLL 197 (394)
Q Consensus 121 ~~~~r~L~l~~~~~~~~~~--~~~~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L 197 (394)
+..+++|.+..+....++. ...+++|+.|.+.++... .+ ++.|.++++|++|++++|.++.+|.. .+++|
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L 123 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-----SLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASL 123 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC-----EECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTC
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC-----cCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccC
Confidence 4678899998777777653 378899999999999876 33 45558999999999999999988876 89999
Q ss_pred cEEecCCCCCcccc--ccccCCCCCcEEEcc-cCCcc
Q 037494 198 KYLQLNIPTLKCLP--LLICTLLNLETLEMP-AGYID 231 (394)
Q Consensus 198 ~~L~l~~~~l~~lp--~~l~~l~~L~~L~l~-~~~l~ 231 (394)
++|++++|.+..+| ..++++++|++|+++ | .+.
T Consensus 124 ~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n-~l~ 159 (562)
T 3a79_B 124 RHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA-KFR 159 (562)
T ss_dssp SEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS-BCC
T ss_pred CEEECCCCCccccCchHhhcccCcccEEecCCC-ccc
Confidence 99999999988764 678889999999888 6 443
No 44
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=2.3e-20 Score=171.67 Aligned_cols=194 Identities=20% Similarity=0.253 Sum_probs=130.0
Q ss_pred CCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCc
Q 037494 142 SDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLE 221 (394)
Q Consensus 142 ~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~ 221 (394)
.+++++.|.+.++... .++++ ..+++|++|++++|.+..++. +..+++|++|++++|.++.+| .++.+++|+
T Consensus 39 ~l~~L~~L~l~~~~i~-----~l~~~-~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~ 110 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVT-----TIEGV-QYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIK 110 (308)
T ss_dssp HHHTCCEEECTTSCCC-----CCTTG-GGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCC
T ss_pred HcCCcCEEEeeCCCcc-----Cchhh-hccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCC
Confidence 4567777777777665 33444 777777777777777777766 777777777777777777765 577777777
Q ss_pred EEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccCCCcchhcCCCCCCCeEEEeecCCc
Q 037494 222 TLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSH 300 (394)
Q Consensus 222 ~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 300 (394)
+|+++ | .+..+|. +..+++|++|+++ +|.+..+++ ++.+++|+.|++.++.......+..+++|+.|++++|.
T Consensus 111 ~L~l~~n-~l~~~~~-l~~l~~L~~L~l~-~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~-- 184 (308)
T 1h6u_A 111 TLDLTST-QITDVTP-LAGLSNLQVLYLD-LNQITNISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNK-- 184 (308)
T ss_dssp EEECTTS-CCCCCGG-GTTCTTCCEEECC-SSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC--
T ss_pred EEECCCC-CCCCchh-hcCCCCCCEEECC-CCccCcCcc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCc--
Confidence 77777 6 6766664 7777777777777 777666554 66777777777777662222236777777777777774
Q ss_pred cccchhhhhcCCCCCcEEEecCCCCCCccCCCCCCCCCCceEEEEecccCCCCC
Q 037494 301 YHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLIQLSLSNTELMEDP 354 (394)
Q Consensus 301 ~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p~~~~~l~~L~~L~L~~~~l~~~~ 354 (394)
. ..++. +..+++|+.|++++ +.+..+ |.+.. +++|+.|++++|++...+
T Consensus 185 l-~~~~~-l~~l~~L~~L~L~~-N~l~~~-~~l~~-l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 185 I-SDISP-LASLPNLIEVHLKN-NQISDV-SPLAN-TSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp C-CCCGG-GGGCTTCCEEECTT-SCCCBC-GGGTT-CTTCCEEEEEEEEEECCC
T ss_pred c-CcChh-hcCCCCCCEEEccC-CccCcc-ccccC-CCCCCEEEccCCeeecCC
Confidence 2 22222 56667777777776 455555 33444 677777777777665433
No 45
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=177.04 Aligned_cols=213 Identities=17% Similarity=0.139 Sum_probs=176.1
Q ss_pred CceeEEEcCCCCCCCCcc-cccCcccccEEecCCCCCcccc-ccccCCCCCcEEEcc-cCCccccchh-hccCccCcEEE
Q 037494 172 KYLRVLNWGSAVLDQFPP-GLENLFLLKYLQLNIPTLKCLP-LLICTLLNLETLEMP-AGYIDHSPEG-IWMMQKLMHLN 247 (394)
Q Consensus 172 ~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~-~~~l~~lp~~-i~~l~~L~~L~ 247 (394)
++|++|++++|.++.+|. .++++++|++|++++|.++.++ ..++++++|++|+++ | .+..+|.. ++.+++|++|+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEE
Confidence 589999999999998875 8999999999999999999875 568999999999999 8 89999876 88999999999
Q ss_pred eeCCCCCCCCCC--CCCCCCcCceeCccccC--CC-cchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecC
Q 037494 248 FDSITLPAPPKN--YSSSLKNLIFISALHPS--SC-TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVN 322 (394)
Q Consensus 248 l~~~~~~~~~p~--~l~~l~~L~~L~~~~~~--~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 322 (394)
++ +|.+..+|. .++.+++|++|++.++. .. .+..++.+++|+.|++++|. .....+..+..+++|+.|++++
T Consensus 131 L~-~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~l~~l~~L~~L~l~~ 207 (353)
T 2z80_A 131 LL-GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD--LQSYEPKSLKSIQNVSHLILHM 207 (353)
T ss_dssp CT-TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT--CCEECTTTTTTCSEEEEEEEEC
T ss_pred CC-CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC--cCccCHHHHhccccCCeecCCC
Confidence 99 999888887 68899999999999984 33 34678999999999999997 6666688899999999999998
Q ss_pred CCCCCccCC--CCCCCCCCceEEEEecccCCCCCc-------------------------------ccccCCCCCCeEEE
Q 037494 323 GSKLSRMVL--SEYQFPPSLIQLSLSNTELMEDPM-------------------------------PMLERLPRLQVMKL 369 (394)
Q Consensus 323 ~~~L~~L~p--~~~~~l~~L~~L~L~~~~l~~~~~-------------------------------~~l~~l~~L~~L~l 369 (394)
+.+..+ | .+.. +++|+.|++++|++....+ +.++.+++|+.|++
T Consensus 208 -n~l~~~-~~~~~~~-~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~L 284 (353)
T 2z80_A 208 -KQHILL-LEIFVDV-TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEF 284 (353)
T ss_dssp -SCSTTH-HHHHHHH-TTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEEC
T ss_pred -Cccccc-hhhhhhh-cccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEEC
Confidence 557766 5 4445 7899999999999876432 23567899999999
Q ss_pred ecccccCceeEEeCCCCCcCCccc
Q 037494 370 KRNSYFGRKLACVGSGGFPELQVL 393 (394)
Q Consensus 370 ~~n~~~~~~~~~~~~~~fp~L~~L 393 (394)
++|.+..... .-.+.+++|+.|
T Consensus 285 s~N~l~~i~~--~~~~~l~~L~~L 306 (353)
T 2z80_A 285 SRNQLKSVPD--GIFDRLTSLQKI 306 (353)
T ss_dssp CSSCCCCCCT--TTTTTCTTCCEE
T ss_pred CCCCCCccCH--HHHhcCCCCCEE
Confidence 9998874321 101356777665
No 46
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.84 E-value=3.3e-20 Score=168.67 Aligned_cols=209 Identities=16% Similarity=0.097 Sum_probs=173.8
Q ss_pred eEEEcCCCCCCCCcccccCcccccEEecCCCCCccccc-cccCCCCCcEEEcc-cCCcccc-chhhccCccCcEEEeeCC
Q 037494 175 RVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPL-LICTLLNLETLEMP-AGYIDHS-PEGIWMMQKLMHLNFDSI 251 (394)
Q Consensus 175 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~-~~~l~~l-p~~i~~l~~L~~L~l~~~ 251 (394)
++++.++++++.+|..+ .++|++|++++|.++.+|. .++++++|++|+++ | .+..+ |..+..+++|++|+++ +
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~-~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLS-D 89 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC-S
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCC-C
Confidence 67889999999998655 4699999999999998874 58899999999999 8 78777 5679999999999999 9
Q ss_pred CC-CCCC-CCCCCCCCcCceeCccccC--CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCC
Q 037494 252 TL-PAPP-KNYSSSLKNLIFISALHPS--SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLS 327 (394)
Q Consensus 252 ~~-~~~~-p~~l~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~ 327 (394)
|. ...+ |..++.+++|++|++.++. ...+..+..+++|+.|++++|. .....+..+..+++|+.|++++ +.+.
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~-n~l~ 166 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA--LQALPDDTFRDLGNLTHLFLHG-NRIS 166 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCS-SCCC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc--ccccCHhHhccCCCccEEECCC-Cccc
Confidence 97 7777 5678999999999999988 4445678999999999999996 4444445688899999999998 6788
Q ss_pred ccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccccCceeEEeCCCCCcCCccc
Q 037494 328 RMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQVL 393 (394)
Q Consensus 328 ~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~fp~L~~L 393 (394)
.+.+ ++.. +++|+.|++++|++....+..++.+++|+.|++++|.+.+..... ...+++|+.|
T Consensus 167 ~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L 230 (285)
T 1ozn_A 167 SVPERAFRG-LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA--LAPLRALQYL 230 (285)
T ss_dssp EECTTTTTT-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHH--HTTCTTCCEE
T ss_pred ccCHHHhcC-ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHH--cccCcccCEE
Confidence 8823 6888 999999999999997777778999999999999999887644211 2356777665
No 47
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.84 E-value=4e-20 Score=167.33 Aligned_cols=198 Identities=21% Similarity=0.194 Sum_probs=143.7
Q ss_pred CceeEEEcCCCCCCCCcc-cccCcccccEEecCCCCCccccc-cccCCCCCcEEEcc-cCCccccc-hhhccCccCcEEE
Q 037494 172 KYLRVLNWGSAVLDQFPP-GLENLFLLKYLQLNIPTLKCLPL-LICTLLNLETLEMP-AGYIDHSP-EGIWMMQKLMHLN 247 (394)
Q Consensus 172 ~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~-~~~l~~lp-~~i~~l~~L~~L~ 247 (394)
++|++|++++|.++.++. .++++++|++|++++|.+..++. .++++++|++|+++ | .+..++ ..+..+++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEEE
Confidence 457888888888776654 67778888888888888777664 57778888888888 7 666665 4577788888888
Q ss_pred eeCCCCCCCCCC-CCCCCCcCceeCccccC-C--CcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCc----EEE
Q 037494 248 FDSITLPAPPKN-YSSSLKNLIFISALHPS-S--CTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLE----CLK 319 (394)
Q Consensus 248 l~~~~~~~~~p~-~l~~l~~L~~L~~~~~~-~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~----~L~ 319 (394)
++ +|.+..++. .++.+++|++|++.++. . ..+..++.+++|+.|++++|. .....+..+..+++|+ .|+
T Consensus 107 l~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~l~l~L~ 183 (276)
T 2z62_A 107 AV-ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK--IQSIYCTDLRVLHQMPLLNLSLD 183 (276)
T ss_dssp CT-TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC--CCEECGGGGHHHHTCTTCCEEEE
T ss_pred CC-CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC--CCcCCHHHhhhhhhccccceeee
Confidence 88 777666654 57788888888888777 2 246778888888888888886 3333334444444444 788
Q ss_pred ecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccccC
Q 037494 320 LVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFG 376 (394)
Q Consensus 320 l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 376 (394)
+++ +.+..+ | .... ..+|+.|++++|+++..+...++.+++|+.|++++|.+..
T Consensus 184 ls~-n~l~~~-~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 184 LSL-NPMNFI-QPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CCS-SCCCEE-CTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred cCC-Cccccc-CccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 877 667777 5 4434 4589999999988876666667888899999998887653
No 48
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.83 E-value=4.1e-20 Score=178.59 Aligned_cols=221 Identities=14% Similarity=0.086 Sum_probs=188.9
Q ss_pred CCceEEEEEEeCCcchhhcc--CCCCCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCCcc-cccCccc
Q 037494 121 LATVKRCFILEDLIEFISLE--QSDMYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQFPP-GLENLFL 196 (394)
Q Consensus 121 ~~~~r~L~l~~~~~~~~~~~--~~~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~ 196 (394)
+..++.|.+..+....++.. ..+++|+.|.+.++... .+ +..|.++++|++|++++|.++.+|. .+..+++
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-----~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 137 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-----TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSK 137 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-----EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSS
T ss_pred CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-----ccChhhccCCccCCEEECCCCcCCeeCHhHhhcccc
Confidence 56789999997777666533 78999999999999886 23 3445999999999999999998875 6899999
Q ss_pred ccEEecCCCCCccccc-cccCCCCCcEEEcc-cCCccccch-hhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCcc
Q 037494 197 LKYLQLNIPTLKCLPL-LICTLLNLETLEMP-AGYIDHSPE-GIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISAL 273 (394)
Q Consensus 197 L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~-~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~ 273 (394)
|++|++++|.+..+|. .+.++++|++|+++ ++.+..+|. .+..+++|++|+++ +|.+..+| .+..+++|+.|++.
T Consensus 138 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~-~n~l~~~~-~~~~l~~L~~L~Ls 215 (440)
T 3zyj_A 138 LKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA-MCNLREIP-NLTPLIKLDELDLS 215 (440)
T ss_dssp CCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECT-TSCCSSCC-CCTTCSSCCEEECT
T ss_pred CceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCC-CCcCcccc-ccCCCcccCEEECC
Confidence 9999999999998875 57899999999999 768888876 58899999999999 99988887 58899999999999
Q ss_pred ccC--CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccC
Q 037494 274 HPS--SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTEL 350 (394)
Q Consensus 274 ~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l 350 (394)
++. ...+..+..+++|+.|++++|. .....+..+..+++|+.|+|++ +++..+.+ .+.. +++|+.|+|++|.+
T Consensus 216 ~N~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~-l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 216 GNHLSAIRPGSFQGLMHLQKLWMIQSQ--IQVIERNAFDNLQSLVEINLAH-NNLTLLPHDLFTP-LHHLERIHLHHNPW 291 (440)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTCC--CCEECTTSSTTCTTCCEEECTT-SCCCCCCTTTTSS-CTTCCEEECCSSCE
T ss_pred CCccCccChhhhccCccCCEEECCCCc--eeEEChhhhcCCCCCCEEECCC-CCCCccChhHhcc-ccCCCEEEcCCCCc
Confidence 998 3446788999999999999997 5555667888999999999998 78888833 6777 99999999999987
Q ss_pred CC
Q 037494 351 ME 352 (394)
Q Consensus 351 ~~ 352 (394)
.+
T Consensus 292 ~C 293 (440)
T 3zyj_A 292 NC 293 (440)
T ss_dssp EC
T ss_pred cC
Confidence 54
No 49
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.83 E-value=4.3e-20 Score=179.06 Aligned_cols=223 Identities=16% Similarity=0.105 Sum_probs=189.4
Q ss_pred CCceEEEEEEeCCcchhhcc--CCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcc-cccCcccc
Q 037494 121 LATVKRCFILEDLIEFISLE--QSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPP-GLENLFLL 197 (394)
Q Consensus 121 ~~~~r~L~l~~~~~~~~~~~--~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L 197 (394)
+..++.|.+..+....++.. ..+++|+.|.+.++.... ..+..|.++++|++|++++|.++.+|. .+..+++|
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 149 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ----IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKL 149 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTC
T ss_pred CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCC----cChhhccCcccCCEEECCCCcCCccChhhhcccCCC
Confidence 56789999997777666433 789999999999998862 114445999999999999999998874 58899999
Q ss_pred cEEecCCCCCccccc-cccCCCCCcEEEcc-cCCccccch-hhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccc
Q 037494 198 KYLQLNIPTLKCLPL-LICTLLNLETLEMP-AGYIDHSPE-GIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALH 274 (394)
Q Consensus 198 ~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~-~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~ 274 (394)
++|++++|.+..+|. .+.++++|++|+++ |+.+..+|. .+..+++|++|+++ +|.+..+| .+..+++|+.|++.+
T Consensus 150 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~-~n~l~~~~-~~~~l~~L~~L~Ls~ 227 (452)
T 3zyi_A 150 RELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG-MCNIKDMP-NLTPLVGLEELEMSG 227 (452)
T ss_dssp CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECT-TSCCSSCC-CCTTCTTCCEEECTT
T ss_pred CEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECC-CCcccccc-cccccccccEEECcC
Confidence 999999999998875 57899999999999 778888886 58899999999999 99988876 588999999999999
Q ss_pred cC--CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCC
Q 037494 275 PS--SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELM 351 (394)
Q Consensus 275 ~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~ 351 (394)
+. ...+..+..+++|+.|++++|. .....+..+..+++|+.|+|++ +++..+.+ .+.. +++|+.|+|++|.+.
T Consensus 228 N~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~-l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 228 NHFPEIRPGSFHGLSSLKKLWVMNSQ--VSLIERNAFDGLASLVELNLAH-NNLSSLPHDLFTP-LRYLVELHLHHNPWN 303 (452)
T ss_dssp SCCSEECGGGGTTCTTCCEEECTTSC--CCEECTTTTTTCTTCCEEECCS-SCCSCCCTTSSTT-CTTCCEEECCSSCEE
T ss_pred CcCcccCcccccCccCCCEEEeCCCc--CceECHHHhcCCCCCCEEECCC-CcCCccChHHhcc-ccCCCEEEccCCCcC
Confidence 98 4456789999999999999997 5566677889999999999998 68888823 6777 999999999999865
Q ss_pred CC
Q 037494 352 ED 353 (394)
Q Consensus 352 ~~ 353 (394)
+.
T Consensus 304 Cd 305 (452)
T 3zyi_A 304 CD 305 (452)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 50
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.83 E-value=1.1e-20 Score=187.60 Aligned_cols=151 Identities=17% Similarity=0.122 Sum_probs=119.3
Q ss_pred CCceEEEEEEeCCcchhhc--cCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCccc-ccCcccc
Q 037494 121 LATVKRCFILEDLIEFISL--EQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPG-LENLFLL 197 (394)
Q Consensus 121 ~~~~r~L~l~~~~~~~~~~--~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L 197 (394)
...+++|.+..+....++. ...+++|++|.+.++.... ..++.|.++++|++|++++|.+..+++. ++.+++|
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT----IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 100 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc----cChhhccccccCCEEECCCCccCccCHHHhccCCCC
Confidence 4578999998776666543 2788999999999998762 2244458999999999999999977754 9999999
Q ss_pred cEEecCCCCCcc--ccccccCCCCCcEEEcc-cCCccccc-hhhccCccCcEEEeeCCCCCC-CCCCCCCCCCcCceeCc
Q 037494 198 KYLQLNIPTLKC--LPLLICTLLNLETLEMP-AGYIDHSP-EGIWMMQKLMHLNFDSITLPA-PPKNYSSSLKNLIFISA 272 (394)
Q Consensus 198 ~~L~l~~~~l~~--lp~~l~~l~~L~~L~l~-~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L~~ 272 (394)
++|++++|.+.. .|..++++++|++|+++ |..+..+| ..++.+++|++|+++ +|... ..|..++.+++|++|.+
T Consensus 101 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~l~~l~~L~~L~l 179 (549)
T 2z81_A 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK-ALSLRNYQSQSLKSIRDIHHLTL 179 (549)
T ss_dssp CEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE-ETTCCEECTTTTTTCSEEEEEEE
T ss_pred cEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeecc-CCcccccChhhhhccccCceEec
Confidence 999999999884 46788999999999999 84477787 478899999999999 88844 36677777766666665
Q ss_pred cccC
Q 037494 273 LHPS 276 (394)
Q Consensus 273 ~~~~ 276 (394)
..+.
T Consensus 180 ~~n~ 183 (549)
T 2z81_A 180 HLSE 183 (549)
T ss_dssp ECSB
T ss_pred ccCc
Confidence 5443
No 51
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.83 E-value=1.9e-19 Score=162.40 Aligned_cols=192 Identities=22% Similarity=0.227 Sum_probs=89.6
Q ss_pred eeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccc-cccCCCCCcEEEcc-cCCccccchhh-ccCccCcEEEeeC
Q 037494 174 LRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPL-LICTLLNLETLEMP-AGYIDHSPEGI-WMMQKLMHLNFDS 250 (394)
Q Consensus 174 L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~-~~~l~~lp~~i-~~l~~L~~L~l~~ 250 (394)
.+.++++++.++.+|..+. .+++.|++++|.+..+|. .++++++|++|+++ | .+..+|..+ ..+++|++|+++
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~- 93 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVT- 93 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECC-
T ss_pred CCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECC-
Confidence 3444555554444444332 344555555555444443 34445555555555 4 444444332 345555555555
Q ss_pred CCCCCCCCCC-CCCCCcCceeCccccC--CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCC
Q 037494 251 ITLPAPPKNY-SSSLKNLIFISALHPS--SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLS 327 (394)
Q Consensus 251 ~~~~~~~p~~-l~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~ 327 (394)
+|.+..+|+. ++.+++|++|++.++. ...+..++.+++|+.|++++|. .....+..+..+++|+.|++++ +.+.
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~-n~l~ 170 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE--LQSLPKGVFDKLTSLKELRLYN-NQLK 170 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCS-SCCS
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc--CCccCHhHccCCcccceeEecC-CcCc
Confidence 4444444432 3444555555554444 2222234455555555555553 2221122344555555555554 3444
Q ss_pred ccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEeccc
Q 037494 328 RMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNS 373 (394)
Q Consensus 328 ~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~ 373 (394)
.+.| .+.. +++|+.|++++|+++..+...+..+++|+.|++++|.
T Consensus 171 ~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 171 RVPEGAFDK-LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCCTTTTTT-CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EeChhHhcc-CCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 4412 3444 5555555555555544443345555555555555554
No 52
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.83 E-value=3.3e-20 Score=184.97 Aligned_cols=238 Identities=16% Similarity=0.155 Sum_probs=155.9
Q ss_pred CCceEEEEEEeCCcchhhc--cCCCCCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCCc-ccccCccc
Q 037494 121 LATVKRCFILEDLIEFISL--EQSDMYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQFP-PGLENLFL 196 (394)
Q Consensus 121 ~~~~r~L~l~~~~~~~~~~--~~~~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~ 196 (394)
+..+++|.+..+....++. ...+++|++|.+.++... .+ ++.|.++++|++|++++|.+..++ ..++.+++
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-----~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-----TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-----EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-----ccCcccccCchhCCEEeCcCCcCCccCHhhhcCccc
Confidence 4567888888666665543 267888888888888765 23 444488888899999888888665 67888888
Q ss_pred ccEEecCCCCCccccc-cccCCCCCcEEEcc-cCCccc--cchhhccCccCcEEEeeCCCCCCCCC-CCCCCCCcC----
Q 037494 197 LKYLQLNIPTLKCLPL-LICTLLNLETLEMP-AGYIDH--SPEGIWMMQKLMHLNFDSITLPAPPK-NYSSSLKNL---- 267 (394)
Q Consensus 197 L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~-~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L---- 267 (394)
|++|++++|.++.+|. .++++++|++|+++ | .+.. +|..++++++|++|+++ +|.+..++ ..++.+++|
T Consensus 102 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~~~ 179 (570)
T 2z63_A 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLS-SNKIQSIYCTDLRVLHQMPLLN 179 (570)
T ss_dssp CCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECT-TSCCCEECGGGGHHHHTCTTCC
T ss_pred cccccccccccccCCCccccccccccEEecCCC-ccceecChhhhcccCCCCEEeCc-CCccceecHHHccchhccchhh
Confidence 8888888888888775 58888888888888 7 6654 67888888888888888 87755554 345556666
Q ss_pred ceeCccccC-CCc-chhcCCCCCCCeEEEeecCC----------------------------------------------
Q 037494 268 IFISALHPS-SCT-PDILSRLPTVQTLRISGDLS---------------------------------------------- 299 (394)
Q Consensus 268 ~~L~~~~~~-~~~-~~~l~~l~~L~~L~l~~~~~---------------------------------------------- 299 (394)
+.|++..+. ... +..+..+ +|+.|++.++..
T Consensus 180 ~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~ 258 (570)
T 2z63_A 180 LSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258 (570)
T ss_dssp CEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSE
T ss_pred hhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccc
Confidence 566666555 211 1222222 455555544310
Q ss_pred ----------ccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEE
Q 037494 300 ----------HYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMK 368 (394)
Q Consensus 300 ----------~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~ 368 (394)
...+..+..+..+++|+.|++++ ..+..+ | ++.. + +|+.|++++|.+...+ . ..+++|+.|+
T Consensus 259 l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~l~~l-~~~~~~-~-~L~~L~l~~n~~~~l~--~-~~l~~L~~L~ 331 (570)
T 2z63_A 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS-VTIERV-KDFSYN-F-GWQHLELVNCKFGQFP--T-LKLKSLKRLT 331 (570)
T ss_dssp EEEEEEEETTEEESCSTTTTGGGTTCSEEEEES-CEECSC-CBCCSC-C-CCSEEEEESCBCSSCC--B-CBCSSCCEEE
T ss_pred hhhhhhhcchhhhhhchhhhcCcCcccEEEecC-ccchhh-hhhhcc-C-CccEEeeccCcccccC--c-ccccccCEEe
Confidence 01223344556667777777776 456666 6 6666 5 7777777777664222 1 3444455555
Q ss_pred Eeccc
Q 037494 369 LKRNS 373 (394)
Q Consensus 369 l~~n~ 373 (394)
+++|.
T Consensus 332 l~~n~ 336 (570)
T 2z63_A 332 FTSNK 336 (570)
T ss_dssp EESCB
T ss_pred CcCCc
Confidence 54443
No 53
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.83 E-value=4.8e-20 Score=183.82 Aligned_cols=240 Identities=19% Similarity=0.201 Sum_probs=182.0
Q ss_pred CceEEEEEEeCCcchhhcc-CCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEE
Q 037494 122 ATVKRCFILEDLIEFISLE-QSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYL 200 (394)
Q Consensus 122 ~~~r~L~l~~~~~~~~~~~-~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 200 (394)
..++.+.+..+....++.. ..+ +|+.|.+.++... .++. ..+++|+.|++++|.+....+. ..+++|++|
T Consensus 282 ~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-----~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L 352 (570)
T 2z63_A 282 TNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-----QFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFL 352 (570)
T ss_dssp TTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-----SCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEE
T ss_pred CcccEEEecCccchhhhhhhccC-CccEEeeccCccc-----ccCc--ccccccCEEeCcCCcccccccc-ccCCCCCEE
Confidence 4556666664444444443 333 6667776666554 2221 3566777777777775533322 678889999
Q ss_pred ecCCCCCccc---cccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCC--CCCCCCCcCceeCccc
Q 037494 201 QLNIPTLKCL---PLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPK--NYSSSLKNLIFISALH 274 (394)
Q Consensus 201 ~l~~~~l~~l---p~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p--~~l~~l~~L~~L~~~~ 274 (394)
++++|.+... |..+..+++|++|+++ | .+..+|..+..+++|++|+++ +|.....+ ..++.+++|++|++.+
T Consensus 353 ~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~~l~~L~~L~l~~ 430 (570)
T 2z63_A 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQ-HSNLKQMSEFSVFLSLRNLIYLDISH 430 (570)
T ss_dssp ECCSSCCBEEEEEEHHHHTCSCCCEEECCSC-SEEEEEEEEETCTTCCEEECT-TSEEESCTTSCTTTTCTTCCEEECTT
T ss_pred eCcCCccCccccccccccccCccCEEECCCC-ccccccccccccCCCCEEEcc-CCccccccchhhhhcCCCCCEEeCcC
Confidence 9999988765 6778889999999999 8 888888778899999999999 88755443 3578899999999998
Q ss_pred cC--CCcchhcCCCCCCCeEEEeecCCccc-cchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccC
Q 037494 275 PS--SCTPDILSRLPTVQTLRISGDLSHYH-SGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTEL 350 (394)
Q Consensus 275 ~~--~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l 350 (394)
+. ...+..++.+++|+.|++++|. .. ..+|..+..+++|+.|++++ +.+..+.| ++.. +++|+.|++++|++
T Consensus 431 n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~p~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~-l~~L~~L~l~~n~l 506 (570)
T 2z63_A 431 THTRVAFNGIFNGLSSLEVLKMAGNS--FQENFLPDIFTELRNLTFLDLSQ-CQLEQLSPTAFNS-LSSLQVLNMASNQL 506 (570)
T ss_dssp SCCEECCTTTTTTCTTCCEEECTTCE--EGGGEECSCCTTCTTCCEEECTT-SCCCEECTTTTTT-CTTCCEEECCSSCC
T ss_pred CcccccchhhhhcCCcCcEEECcCCc--CccccchhhhhcccCCCEEECCC-CccccCChhhhhc-ccCCCEEeCCCCcC
Confidence 87 4566778889999999999986 44 35778888999999999998 56666646 8888 99999999999998
Q ss_pred CCCCcccccCCCCCCeEEEecccccC
Q 037494 351 MEDPMPMLERLPRLQVMKLKRNSYFG 376 (394)
Q Consensus 351 ~~~~~~~l~~l~~L~~L~l~~n~~~~ 376 (394)
+..++..++++++|+.|++++|.+.+
T Consensus 507 ~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 507 KSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCHHHhhcccCCcEEEecCCcccC
Confidence 87776778899999999998887654
No 54
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.82 E-value=2.8e-20 Score=189.54 Aligned_cols=243 Identities=15% Similarity=0.109 Sum_probs=161.2
Q ss_pred CCceEEEEEEeCCcchhhcc--CCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcc-cccCcccc
Q 037494 121 LATVKRCFILEDLIEFISLE--QSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPP-GLENLFLL 197 (394)
Q Consensus 121 ~~~~r~L~l~~~~~~~~~~~--~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L 197 (394)
+..+++|.+..+....++.. ..+++|++|.+.++.... ..++.|.++++|++|++++|.+..+|+ .++++++|
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 99 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK----LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL 99 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC----CCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCc----cCHHHHhcccCcCEEECCCCccCccChhhhccCCCC
Confidence 45677788776665555542 667788888887776652 224444778888888888888777775 57788888
Q ss_pred cEEecCCCCCcccc-ccccCCCCCcEEEcc-cCCcccc-chhhccCccCcEEEeeCCCCCCCCCCC---CCCCCcCceeC
Q 037494 198 KYLQLNIPTLKCLP-LLICTLLNLETLEMP-AGYIDHS-PEGIWMMQKLMHLNFDSITLPAPPKNY---SSSLKNLIFIS 271 (394)
Q Consensus 198 ~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~-~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~---l~~l~~L~~L~ 271 (394)
++|++++|.+..+| ..++++++|++|+++ | .+... |..++++++|++|+++ +|.+..+++. ...+++|+.|+
T Consensus 100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~~~~~~L~~L~ 177 (680)
T 1ziw_A 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLS-NNKIQALKSEELDIFANSSLKKLE 177 (680)
T ss_dssp SEEECCSSCCCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECC-SSCCCCBCHHHHGGGTTCEESEEE
T ss_pred CEEECCCCccCccChhHccccCCCCEEECCCC-cccccCchhhcccccCCEEEcc-CCcccccCHHHhhccccccccEEE
Confidence 88888888777766 457778888888888 7 55544 3456778888888888 7775555542 22456777777
Q ss_pred ccccC--CCcchhcCCC---------------------------CCCCeEEEeecCCccccchhhhhcCCC--CCcEEEe
Q 037494 272 ALHPS--SCTPDILSRL---------------------------PTVQTLRISGDLSHYHSGVSKSLCELH--KLECLKL 320 (394)
Q Consensus 272 ~~~~~--~~~~~~l~~l---------------------------~~L~~L~l~~~~~~~~~~~~~~l~~~~--~L~~L~l 320 (394)
+..+. ...+..++.+ ++|+.|+++++. .....+..+..++ +|+.|++
T Consensus 178 L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~--l~~~~~~~~~~l~~~~L~~L~L 255 (680)
T 1ziw_A 178 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ--LSTTSNTTFLGLKWTNLTMLDL 255 (680)
T ss_dssp CTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSC--CCEECTTTTGGGGGSCCCEEEC
T ss_pred CCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCc--ccccChhHhhccCcCCCCEEEC
Confidence 77765 2223333333 345555555554 3333344454443 3777777
Q ss_pred cCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEeccc
Q 037494 321 VNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNS 373 (394)
Q Consensus 321 ~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~ 373 (394)
++ +.+..+.| ++.. +++|+.|++++|++....+..++++++|+.|++++|.
T Consensus 256 s~-n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~ 307 (680)
T 1ziw_A 256 SY-NNLNVVGNDSFAW-LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF 307 (680)
T ss_dssp TT-SCCCEECTTTTTT-CTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCB
T ss_pred CC-CCcCccCcccccC-cccccEeeCCCCccCccChhhhcCCCCccEEeccchh
Confidence 76 45555534 6777 8888888888888766666677888888888886543
No 55
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.82 E-value=2.5e-19 Score=163.30 Aligned_cols=170 Identities=19% Similarity=0.150 Sum_probs=78.1
Q ss_pred CceeEEEcCCCCCCCC-cccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEee
Q 037494 172 KYLRVLNWGSAVLDQF-PPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFD 249 (394)
Q Consensus 172 ~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~ 249 (394)
+.+++|++++|.+..+ +..+..+++|++|++++|.++.+|.. +.+++|++|+++ | .+..+|..+..+++|++|+++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~ 108 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVS 108 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECC
Confidence 3445555555554433 23444555555555555555544432 445555555555 4 444555444455555555555
Q ss_pred CCCCCCCCCC-CCCCCCcCceeCccccC-CCc-chhcCCCCCCCeEEEeecCCccccchh-hhhcCCCCCcEEEecCCCC
Q 037494 250 SITLPAPPKN-YSSSLKNLIFISALHPS-SCT-PDILSRLPTVQTLRISGDLSHYHSGVS-KSLCELHKLECLKLVNGSK 325 (394)
Q Consensus 250 ~~~~~~~~p~-~l~~l~~L~~L~~~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~ 325 (394)
+|.+..+|+ .++.+++|++|++.++. ... +..+..+++|+.|++++|. . ..+| ..+..+++|+.|++++ +.
T Consensus 109 -~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~--l-~~l~~~~~~~l~~L~~L~L~~-N~ 183 (290)
T 1p9a_G 109 -FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN--L-TELPAGLLNGLENLDTLLLQE-NS 183 (290)
T ss_dssp -SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC--C-SCCCTTTTTTCTTCCEEECCS-SC
T ss_pred -CCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc--C-CccCHHHhcCcCCCCEEECCC-Cc
Confidence 554444442 24445555555554444 111 2223444455555554443 1 1222 2233444555555544 34
Q ss_pred CCccCC-CCCCCCCCceEEEEecccC
Q 037494 326 LSRMVL-SEYQFPPSLIQLSLSNTEL 350 (394)
Q Consensus 326 L~~L~p-~~~~~l~~L~~L~L~~~~l 350 (394)
+..+ | .+.. .++|+.|+|++|.+
T Consensus 184 l~~i-p~~~~~-~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 184 LYTI-PKGFFG-SHLLPFAFLHGNPW 207 (290)
T ss_dssp CCCC-CTTTTT-TCCCSEEECCSCCB
T ss_pred CCcc-Chhhcc-cccCCeEEeCCCCc
Confidence 4444 4 3333 44455555554444
No 56
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.82 E-value=3e-19 Score=186.14 Aligned_cols=246 Identities=14% Similarity=0.087 Sum_probs=185.6
Q ss_pred CCceEEEEEEeCCc-chh-hc-cCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCC-Cccc--ccCc
Q 037494 121 LATVKRCFILEDLI-EFI-SL-EQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQ-FPPG--LENL 194 (394)
Q Consensus 121 ~~~~r~L~l~~~~~-~~~-~~-~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~-lp~~--i~~l 194 (394)
...++.|.+..+.. ..+ +. ...+++|++|.+.++.... ..++.|.++++|++|++++|.+.. +|.. ++++
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L 122 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF----LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE----ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc----cCHhHccCCcccCEeeCcCCCCCcccccCcccccc
Confidence 67789999985522 233 22 2788999999999998862 225555999999999999999884 5544 8999
Q ss_pred ccccEEecCCCCCcccc--ccccCCCCCcEEEcc-cCCccc-cchhhccC--ccCcEEEeeCCCC-CCCCCCCCCCC---
Q 037494 195 FLLKYLQLNIPTLKCLP--LLICTLLNLETLEMP-AGYIDH-SPEGIWMM--QKLMHLNFDSITL-PAPPKNYSSSL--- 264 (394)
Q Consensus 195 ~~L~~L~l~~~~l~~lp--~~l~~l~~L~~L~l~-~~~l~~-lp~~i~~l--~~L~~L~l~~~~~-~~~~p~~l~~l--- 264 (394)
++|++|++++|.+..++ ..++++++|++|+++ | .+.. .|..+..+ ++|+.|+++ +|. ....|..++.+
T Consensus 123 ~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N-~i~~~~~~~l~~l~~~~L~~L~L~-~n~l~~~~~~~~~~~~~~ 200 (844)
T 3j0a_A 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN-QIFLVCEHELEPLQGKTLSFFSLA-ANSLYSRVSVDWGKCMNP 200 (844)
T ss_dssp SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS-CCCCCCSGGGHHHHHCSSCCCEEC-CSBSCCCCCCCCCSSSCT
T ss_pred CCCCEEECCCCcccccccchhHhhCCCCCEEECCCC-cCCeeCHHHcccccCCccceEECC-CCccccccccchhhcCCc
Confidence 99999999999988653 568999999999999 8 5544 34555555 566666665 554 22222222222
Q ss_pred -----------------------------------------------------------------CcCceeCccccC--C
Q 037494 265 -----------------------------------------------------------------KNLIFISALHPS--S 277 (394)
Q Consensus 265 -----------------------------------------------------------------~~L~~L~~~~~~--~ 277 (394)
++|+.|++.++. .
T Consensus 201 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~ 280 (844)
T 3j0a_A 201 FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS 280 (844)
T ss_dssp TTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE
T ss_pred cccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccc
Confidence 345555555544 2
Q ss_pred CcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcc
Q 037494 278 CTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMP 356 (394)
Q Consensus 278 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~ 356 (394)
..+..++.+++|+.|++++|. .....+..+..+++|+.|++++ +.+..+.| .+.. +++|+.|++++|++......
T Consensus 281 ~~~~~~~~l~~L~~L~L~~n~--i~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~-l~~L~~L~L~~N~i~~~~~~ 356 (844)
T 3j0a_A 281 LNSRVFETLKDLKVLNLAYNK--INKIADEAFYGLDNLQVLNLSY-NLLGELYSSNFYG-LPKVAYIDLQKNHIAIIQDQ 356 (844)
T ss_dssp ECSCCSSSCCCCCEEEEESCC--CCEECTTTTTTCSSCCEEEEES-CCCSCCCSCSCSS-CTTCCEEECCSCCCCCCCSS
T ss_pred cChhhhhcCCCCCEEECCCCc--CCCCChHHhcCCCCCCEEECCC-CCCCccCHHHhcC-CCCCCEEECCCCCCCccChh
Confidence 234557889999999999997 6666677889999999999998 66777745 8888 99999999999999777777
Q ss_pred cccCCCCCCeEEEecccccC
Q 037494 357 MLERLPRLQVMKLKRNSYFG 376 (394)
Q Consensus 357 ~l~~l~~L~~L~l~~n~~~~ 376 (394)
.++.+++|+.|++++|.+.+
T Consensus 357 ~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 357 TFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp CSCSCCCCCEEEEETCCSCC
T ss_pred hhcCCCCCCEEECCCCCCCc
Confidence 78999999999999998765
No 57
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.81 E-value=1.7e-19 Score=165.93 Aligned_cols=195 Identities=20% Similarity=0.207 Sum_probs=146.4
Q ss_pred ccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEE
Q 037494 169 ENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLN 247 (394)
Q Consensus 169 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~ 247 (394)
..+++|++|+++++.+..+| .+..+++|++|++++|.+..+|. ++.+++|++|+++ | .+..+| .+..+++|++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEE
T ss_pred HHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEE
Confidence 45677888888888888776 57788888888888888888776 8888888888888 7 777775 577888888888
Q ss_pred eeCCCCCCCCCCCCCCCCcCceeCccccCCCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCC
Q 037494 248 FDSITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLS 327 (394)
Q Consensus 248 l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~ 327 (394)
++ +|.+..++. ++.+++|+.|++.++.......++.+++|+.|++++|. ...++. +..+++|+.|++++ +.+.
T Consensus 114 l~-~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~---l~~~~~-l~~l~~L~~L~l~~-n~l~ 186 (308)
T 1h6u_A 114 LT-STQITDVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQ---VSDLTP-LANLSKLTTLKADD-NKIS 186 (308)
T ss_dssp CT-TSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSC---CCCCGG-GTTCTTCCEEECCS-SCCC
T ss_pred CC-CCCCCCchh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCc---CCCChh-hcCCCCCCEEECCC-CccC
Confidence 88 887766654 78888888888888773333337788888888888875 223333 77788888888887 5566
Q ss_pred ccCCCCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccccCce
Q 037494 328 RMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRK 378 (394)
Q Consensus 328 ~L~p~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 378 (394)
.+ |.+.. +++|+.|++++|++.... .+..+++|+.|++++|.+++..
T Consensus 187 ~~-~~l~~-l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 187 DI-SPLAS-LPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp CC-GGGGG-CTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCC
T ss_pred cC-hhhcC-CCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCC
Confidence 65 44455 788888888888875433 4778888888888888776643
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.81 E-value=4.3e-21 Score=177.35 Aligned_cols=213 Identities=19% Similarity=0.134 Sum_probs=111.6
Q ss_pred CCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCc
Q 037494 142 SDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLE 221 (394)
Q Consensus 142 ~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~ 221 (394)
.+++|+.|.+.++.... ..+..|..+++|++|++++|.+...++ +..+++|++|++++|.++.+|. .++|+
T Consensus 32 ~~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L~ 102 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQ----ISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIE 102 (317)
T ss_dssp TGGGCSEEECTTSCCCC----CCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTCC
T ss_pred cCCCCCEEECcCCccCc----CCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC----CCCcC
Confidence 34456666666665541 113333666666666666666654443 5666666666666666655542 25566
Q ss_pred EEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCC-CCCCCCcCceeCccccC-C-Ccchhc-CCCCCCCeEEEee
Q 037494 222 TLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKN-YSSSLKNLIFISALHPS-S-CTPDIL-SRLPTVQTLRISG 296 (394)
Q Consensus 222 ~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~~~~~~-~-~~~~~l-~~l~~L~~L~l~~ 296 (394)
+|+++ | .+..++.. .+++|++|+++ +|.+..+++ .++.+++|++|++.++. . ..+..+ ..+++|+.|++++
T Consensus 103 ~L~l~~n-~l~~~~~~--~~~~L~~L~l~-~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 178 (317)
T 3o53_A 103 TLHAANN-NISRVSCS--RGQGKKNIYLA-NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (317)
T ss_dssp EEECCSS-CCSEEEEC--CCSSCEEEECC-SSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred EEECCCC-ccCCcCcc--ccCCCCEEECC-CCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC
Confidence 66666 5 55554432 34556666666 555444433 35555566666665555 1 122223 2455566666665
Q ss_pred cCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEeccccc
Q 037494 297 DLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYF 375 (394)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~ 375 (394)
|. ...++ ....+++|+.|++++ +.+..+ | .+.. +++|+.|++++|++.. .++.+..+++|+.|++++|.+.
T Consensus 179 N~---l~~~~-~~~~l~~L~~L~Ls~-N~l~~l-~~~~~~-l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 179 NF---IYDVK-GQVVFAKLKTLDLSS-NKLAFM-GPEFQS-AAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp SC---CCEEE-CCCCCTTCCEEECCS-SCCCEE-CGGGGG-GTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCB
T ss_pred Cc---Ccccc-cccccccCCEEECCC-CcCCcc-hhhhcc-cCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCcc
Confidence 53 12222 122355566666655 445555 4 4444 5566666666665542 2233455566666666555544
No 59
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.80 E-value=1.6e-19 Score=179.32 Aligned_cols=179 Identities=14% Similarity=0.016 Sum_probs=138.3
Q ss_pred cchhhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCc-ccccCcccccEEecCCCCCccccc
Q 037494 134 IEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFP-PGLENLFLLKYLQLNIPTLKCLPL 212 (394)
Q Consensus 134 ~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~lp~ 212 (394)
...+|.. -.+++++|.+.++.... ..+..|.++++|++|++++|.+..++ ..++.+++|++|++++|.+..+|+
T Consensus 17 l~~ip~~-~~~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 91 (549)
T 2z81_A 17 FTSIPSG-LTAAMKSLDLSFNKITY----IGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS 91 (549)
T ss_dssp CSSCCSC-CCTTCCEEECCSSCCCE----ECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH
T ss_pred ccccccc-CCCCccEEECcCCccCc----cChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH
Confidence 3444543 23789999999998762 12344499999999999999999665 789999999999999999998886
Q ss_pred c-ccCCCCCcEEEcc-cCCccc--cchhhccCccCcEEEeeCCCC-CCCCC-CCCCCCCcCceeCccccC--CCcchhcC
Q 037494 213 L-ICTLLNLETLEMP-AGYIDH--SPEGIWMMQKLMHLNFDSITL-PAPPK-NYSSSLKNLIFISALHPS--SCTPDILS 284 (394)
Q Consensus 213 ~-l~~l~~L~~L~l~-~~~l~~--lp~~i~~l~~L~~L~l~~~~~-~~~~p-~~l~~l~~L~~L~~~~~~--~~~~~~l~ 284 (394)
. ++++++|++|+++ | .+.. .|..++.+++|++|+++ +|. ...+| ..++.+++|+.|++.++. ...+..++
T Consensus 92 ~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~-~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 169 (549)
T 2z81_A 92 SWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIG-NVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK 169 (549)
T ss_dssp HHHTTCTTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEE-ESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred HHhccCCCCcEEECCCC-cccccchhhhhhccCCccEEECC-CCccccccCHhhhhcccccCeeeccCCcccccChhhhh
Confidence 6 9999999999999 8 7774 46679999999999999 887 67776 468999999999999888 44567777
Q ss_pred CCCCCCeEEEeecCCccccchhhh-hcCCCCCcEEEecC
Q 037494 285 RLPTVQTLRISGDLSHYHSGVSKS-LCELHKLECLKLVN 322 (394)
Q Consensus 285 ~l~~L~~L~l~~~~~~~~~~~~~~-l~~~~~L~~L~l~~ 322 (394)
.+++|+.|++.++. ...++.. +..+++|+.|++++
T Consensus 170 ~l~~L~~L~l~~n~---~~~~~~~~~~~l~~L~~L~L~~ 205 (549)
T 2z81_A 170 SIRDIHHLTLHLSE---SAFLLEIFADILSSVRYLELRD 205 (549)
T ss_dssp TCSEEEEEEEECSB---STTHHHHHHHSTTTBSEEEEES
T ss_pred ccccCceEecccCc---ccccchhhHhhcccccEEEccC
Confidence 77777777777664 2223322 23455555555554
No 60
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.80 E-value=8.3e-21 Score=175.02 Aligned_cols=196 Identities=18% Similarity=0.152 Sum_probs=131.2
Q ss_pred cCCceeEEEcCCCCCC-CCcccc--cCcccccEEecCCCCCccccccccCC-----CCCcEEEcc-cCCccccc-hhhcc
Q 037494 170 NFKYLRVLNWGSAVLD-QFPPGL--ENLFLLKYLQLNIPTLKCLPLLICTL-----LNLETLEMP-AGYIDHSP-EGIWM 239 (394)
Q Consensus 170 ~l~~L~~L~l~~~~~~-~lp~~i--~~l~~L~~L~l~~~~l~~lp~~l~~l-----~~L~~L~l~-~~~l~~lp-~~i~~ 239 (394)
.+++|++|++++|.+. .+|..+ +.+++|++|++++|.+..+|..++.+ ++|++|+++ | .+..+| ..++.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhcc
Confidence 5777777777777776 566655 77777777777777777666666655 777777777 6 666665 56777
Q ss_pred CccCcEEEeeCCCCCCC---CCCCC--CCCCcCceeCccccC-C---Ccc-hhcCCCCCCCeEEEeecCCccccchh-hh
Q 037494 240 MQKLMHLNFDSITLPAP---PKNYS--SSLKNLIFISALHPS-S---CTP-DILSRLPTVQTLRISGDLSHYHSGVS-KS 308 (394)
Q Consensus 240 l~~L~~L~l~~~~~~~~---~p~~l--~~l~~L~~L~~~~~~-~---~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~-~~ 308 (394)
+++|++|+++ +|.... +|..+ +.+++|++|++.++. . ..+ ..+..+++|+.|++++|. .....| ..
T Consensus 172 l~~L~~L~Ls-~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~ 248 (312)
T 1wwl_A 172 FPALSTLDLS-DNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS--LRDAAGAPS 248 (312)
T ss_dssp CSSCCEEECC-SCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC--CCSSCCCSC
T ss_pred CCCCCEEECC-CCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc--CCcccchhh
Confidence 7777777777 766322 23333 677777777777776 2 112 123456777888887775 333332 33
Q ss_pred hcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccccC
Q 037494 309 LCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFG 376 (394)
Q Consensus 309 l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 376 (394)
+..+++|+.|++++ +.+..+ | ++. ++|+.|++++|+++.. +.+..+++|++|++++|.+++
T Consensus 249 ~~~l~~L~~L~Ls~-N~l~~i-p~~~~---~~L~~L~Ls~N~l~~~--p~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 249 CDWPSQLNSLNLSF-TGLKQV-PKGLP---AKLSVLDLSYNRLDRN--PSPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCCCTTCCEEECTT-SCCSSC-CSSCC---SEEEEEECCSSCCCSC--CCTTTSCEEEEEECTTCTTTC
T ss_pred hhhcCCCCEEECCC-CccChh-hhhcc---CCceEEECCCCCCCCC--hhHhhCCCCCEEeccCCCCCC
Confidence 44567788888877 566666 6 552 5788888888877554 337777888888887777665
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=1.1e-19 Score=177.68 Aligned_cols=213 Identities=19% Similarity=0.126 Sum_probs=149.7
Q ss_pred CCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCc
Q 037494 142 SDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLE 221 (394)
Q Consensus 142 ~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~ 221 (394)
.+++|+.|.+.++.... ..+..|..+++|++|++++|.+...++ ++.+++|++|++++|.+..+|.. ++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~~L~ 102 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQ----ISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG----PSIE 102 (487)
T ss_dssp TGGGCCEEECCSSCCCC----CCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC----TTCC
T ss_pred cCCCccEEEeeCCcCCC----CCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCC----CCcC
Confidence 34478888888877652 113444788888888888888775554 77888888888888887776643 6788
Q ss_pred EEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCC-CCCCCCCCcCceeCccccC--CCcchhcC-CCCCCCeEEEee
Q 037494 222 TLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPP-KNYSSSLKNLIFISALHPS--SCTPDILS-RLPTVQTLRISG 296 (394)
Q Consensus 222 ~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~~~~~~--~~~~~~l~-~l~~L~~L~l~~ 296 (394)
+|+++ | .+..+|.. .+++|++|+++ +|.+..+ |..++.+++|+.|++.++. ...+..+. .+++|+.|++++
T Consensus 103 ~L~L~~N-~l~~~~~~--~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 103 TLHAANN-NISRVSCS--RGQGKKNIYLA-NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (487)
T ss_dssp EEECCSS-CCCCEEEC--CCSSCEEEECC-SSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred EEECcCC-cCCCCCcc--ccCCCCEEECC-CCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence 88888 7 77666643 46778888888 7775555 4457778888888888777 33445554 677888888888
Q ss_pred cCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEeccccc
Q 037494 297 DLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYF 375 (394)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~ 375 (394)
|. .. .++ ....+++|+.|++++ +.+..+ | .+.. +++|+.|++++|.+.. .++.++.+++|+.|++++|.+.
T Consensus 179 N~--l~-~~~-~~~~l~~L~~L~Ls~-N~l~~~-~~~~~~-l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 179 NF--IY-DVK-GQVVFAKLKTLDLSS-NKLAFM-GPEFQS-AAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp SC--CC-EEE-CCCCCTTCCEEECCS-SCCCEE-CGGGGG-GTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred Cc--cc-ccc-ccccCCCCCEEECCC-CCCCCC-CHhHcC-CCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 75 22 223 233577888888887 667777 6 6666 7888888888888754 3345677788888888777665
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=7.2e-20 Score=169.09 Aligned_cols=211 Identities=16% Similarity=0.052 Sum_probs=170.0
Q ss_pred hHHhccCCceeEEEcCCCCCCCCc-ccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCcc
Q 037494 165 ENFCENFKYLRVLNWGSAVLDQFP-PGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQK 242 (394)
Q Consensus 165 ~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~ 242 (394)
..++..+++|++|++++|.++.++ ..++.+++|++|++++|.+...++ ++.+++|++|+++ | .+..+|. .++
T Consensus 27 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~~----~~~ 100 (317)
T 3o53_A 27 ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLV----GPS 100 (317)
T ss_dssp HHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS-EEEEEEE----CTT
T ss_pred HHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC-ccccccC----CCC
Confidence 456678889999999999999775 689999999999999999988775 8999999999999 8 8887763 489
Q ss_pred CcEEEeeCCCCCCCCCCCCCCCCcCceeCccccC-CC-cchhcCCCCCCCeEEEeecCCccccchhhhh-cCCCCCcEEE
Q 037494 243 LMHLNFDSITLPAPPKNYSSSLKNLIFISALHPS-SC-TPDILSRLPTVQTLRISGDLSHYHSGVSKSL-CELHKLECLK 319 (394)
Q Consensus 243 L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~-~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l-~~~~~L~~L~ 319 (394)
|++|+++ +|.+..++. ..+++|++|++.++. .. .+..++.+++|+.|++++|. .....+..+ ..+++|+.|+
T Consensus 101 L~~L~l~-~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~~l~~L~~L~ 175 (317)
T 3o53_A 101 IETLHAA-NNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE--IDTVNFAELAASSDTLEHLN 175 (317)
T ss_dssp CCEEECC-SSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC--CCEEEGGGGGGGTTTCCEEE
T ss_pred cCEEECC-CCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC--CCcccHHHHhhccCcCCEEE
Confidence 9999999 998777664 347899999999988 33 34467888999999999997 555445555 4789999999
Q ss_pred ecCCCCCCccCCCCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccccCceeEEeCCCCCcCCccc
Q 037494 320 LVNGSKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQVL 393 (394)
Q Consensus 320 l~~~~~L~~L~p~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~fp~L~~L 393 (394)
+++ +.+..+ |.... +++|+.|++++|++...+ +.+..+++|+.|++++|.+.... .. ...+++|+.|
T Consensus 176 L~~-N~l~~~-~~~~~-l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~L~~N~l~~l~--~~-~~~l~~L~~L 242 (317)
T 3o53_A 176 LQY-NFIYDV-KGQVV-FAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVLIE--KA-LRFSQNLEHF 242 (317)
T ss_dssp CTT-SCCCEE-ECCCC-CTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCCEEC--TT-CCCCTTCCEE
T ss_pred CCC-CcCccc-ccccc-cccCCEEECCCCcCCcch-hhhcccCcccEEECcCCcccchh--hH-hhcCCCCCEE
Confidence 998 678777 63334 899999999999986543 45889999999999999877421 11 3356677665
No 63
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.79 E-value=4.4e-19 Score=160.17 Aligned_cols=170 Identities=19% Similarity=0.234 Sum_probs=81.0
Q ss_pred CCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCcccccc-ccCCCCC
Q 037494 142 SDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLL-ICTLLNL 220 (394)
Q Consensus 142 ~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L 220 (394)
.+++++.|.+.++... .++.+ ..+++|++|++++|.+..++ .++.+++|++|++++|.+..+|+. ++++++|
T Consensus 39 ~l~~L~~L~l~~~~i~-----~~~~l-~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIK-----SVQGI-QYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111 (272)
T ss_dssp HHTTCCEEECTTSCCC-----CCTTG-GGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred cccceeeeeeCCCCcc-----ccccc-ccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCC
Confidence 3445555555554443 22333 55555555555555555443 455555555555555555554433 3455555
Q ss_pred cEEEcc-cCCccccchh-hccCccCcEEEeeCCCCCCCCCCC-CCCCCcCceeCccccC-CC-cchhcCCCCCCCeEEEe
Q 037494 221 ETLEMP-AGYIDHSPEG-IWMMQKLMHLNFDSITLPAPPKNY-SSSLKNLIFISALHPS-SC-TPDILSRLPTVQTLRIS 295 (394)
Q Consensus 221 ~~L~l~-~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~~~~~~-~~-~~~~l~~l~~L~~L~l~ 295 (394)
++|+++ | .+..+|.. ++.+++|++|+++ +|.+..+|+. ++.+++|++|++.++. .. .+..++.+++|+.|+++
T Consensus 112 ~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 189 (272)
T 3rfs_A 112 KELVLVEN-QLQSLPDGVFDKLTNLTYLNLA-HNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY 189 (272)
T ss_dssp CEEECTTS-CCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEECCCC-cCCccCHHHhccCCCCCEEECC-CCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECC
Confidence 555555 5 44444433 4455555555555 5554444433 3445555555555444 11 11223444445555554
Q ss_pred ecCCccccchhhhhcCCCCCcEEEecC
Q 037494 296 GDLSHYHSGVSKSLCELHKLECLKLVN 322 (394)
Q Consensus 296 ~~~~~~~~~~~~~l~~~~~L~~L~l~~ 322 (394)
+|. .....+..+..+++|+.|++++
T Consensus 190 ~N~--l~~~~~~~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 190 QNQ--LKSVPDGVFDRLTSLQYIWLHD 214 (272)
T ss_dssp SSC--CSCCCTTTTTTCTTCCEEECCS
T ss_pred CCc--CCccCHHHHhCCcCCCEEEccC
Confidence 443 2222222334444444444443
No 64
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.79 E-value=6.6e-19 Score=179.37 Aligned_cols=197 Identities=16% Similarity=0.133 Sum_probs=103.1
Q ss_pred ceeEEEcCCCCCCCC-cccccCcccccEEecCCCCCc-ccc-ccccCCCCCcEEEcc-cCCccccc-hhhccCccCcEEE
Q 037494 173 YLRVLNWGSAVLDQF-PPGLENLFLLKYLQLNIPTLK-CLP-LLICTLLNLETLEMP-AGYIDHSP-EGIWMMQKLMHLN 247 (394)
Q Consensus 173 ~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~-~lp-~~l~~l~~L~~L~l~-~~~l~~lp-~~i~~l~~L~~L~ 247 (394)
.|++|++++|.+..+ |..++.+++|++|++++|.+. .+| ..+..+++|++|+++ | .+..++ ..+..+++|+.|+
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~L~~L~ 460 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN-KYLQLTRNSFALVPSLQRLM 460 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSC-SEEECCTTTTTTCTTCCEEE
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCC-CcceeChhhhhcCcccccch
Confidence 344444444444432 345556666666666666654 244 345566666666666 5 444332 3445555555555
Q ss_pred eeCCCCC---CCCCCCCCCCCcCceeCccccC-C-CcchhcCCCCCCCeEEEeecCCccccc----hh----hhhcCCCC
Q 037494 248 FDSITLP---APPKNYSSSLKNLIFISALHPS-S-CTPDILSRLPTVQTLRISGDLSHYHSG----VS----KSLCELHK 314 (394)
Q Consensus 248 l~~~~~~---~~~p~~l~~l~~L~~L~~~~~~-~-~~~~~l~~l~~L~~L~l~~~~~~~~~~----~~----~~l~~~~~ 314 (394)
++ +|.. ...|..++.+++|+.|++.++. . ..+..+..+++|+.|++++|. .... +| ..+..+++
T Consensus 461 l~-~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~~~~~~~~~l~~ 537 (680)
T 1ziw_A 461 LR-RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN--LARLWKHANPGGPIYFLKGLSH 537 (680)
T ss_dssp CT-TSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CGGGGSTTSTTSCCCTTTTCTT
T ss_pred hc-cccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCC--ccccchhhccCCcchhhcCCCC
Confidence 55 5442 3445555666666666666555 2 222335556666666666654 1110 01 12455556
Q ss_pred CcEEEecCCCCCCccCC--CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccccC
Q 037494 315 LECLKLVNGSKLSRMVL--SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFG 376 (394)
Q Consensus 315 L~~L~l~~~~~L~~L~p--~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 376 (394)
|+.|++++ +.+..+ | .+.. +++|+.|++++|+++..+...+..+++|+.|++++|.+++
T Consensus 538 L~~L~L~~-N~l~~i-~~~~~~~-l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 598 (680)
T 1ziw_A 538 LHILNLES-NGFDEI-PVEVFKD-LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598 (680)
T ss_dssp CCEEECCS-SCCCCC-CTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCB
T ss_pred CCEEECCC-CCCCCC-CHHHccc-ccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCc
Confidence 66666655 445555 4 3555 5666666666666554444445556666666665555443
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.79 E-value=1.7e-18 Score=173.08 Aligned_cols=220 Identities=17% Similarity=0.111 Sum_probs=144.2
Q ss_pred CCceEEEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEE
Q 037494 121 LATVKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYL 200 (394)
Q Consensus 121 ~~~~r~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 200 (394)
+.+++.|.+..+....++. .+++|++|.+.++... .++. .+++|++|++++|.++.+|. .+.+|++|
T Consensus 60 ~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~-----~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L 126 (622)
T 3g06_A 60 PAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLT-----SLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKL 126 (622)
T ss_dssp CTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCS-----CCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEE
T ss_pred CCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCC-----cCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEE
Confidence 4567888888666666555 5678888888887765 2332 66788888888888887776 56778888
Q ss_pred ecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhcc---C--------------ccCcEEEeeCCCCCCCCCCCCC
Q 037494 201 QLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWM---M--------------QKLMHLNFDSITLPAPPKNYSS 262 (394)
Q Consensus 201 ~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~---l--------------~~L~~L~l~~~~~~~~~p~~l~ 262 (394)
++++|.++.+|.. +++|++|+++ | .+..+|..+.+ + ++|+.|+++ +|.+..+|..
T Consensus 127 ~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls-~N~l~~l~~~-- 199 (622)
T 3g06_A 127 WIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVS-DNQLASLPTL-- 199 (622)
T ss_dssp ECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECC-SSCCSCCCCC--
T ss_pred ECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECC-CCCCCCCCCc--
Confidence 8888888877764 4678888888 7 77666643221 1 344444444 4443333322
Q ss_pred CCCcCceeCccccC-CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCCCCCCCCCCce
Q 037494 263 SLKNLIFISALHPS-SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLI 341 (394)
Q Consensus 263 ~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p~~~~~l~~L~ 341 (394)
+++|+.|.+.+|. ...+. .+++|+.|++++|. ...+| ..+++|+.|++++ +++..+ |. . +++|+
T Consensus 200 -~~~L~~L~L~~N~l~~l~~---~~~~L~~L~Ls~N~---L~~lp---~~l~~L~~L~Ls~-N~L~~l-p~--~-~~~L~ 264 (622)
T 3g06_A 200 -PSELYKLWAYNNRLTSLPA---LPSGLKELIVSGNR---LTSLP---VLPSELKELMVSG-NRLTSL-PM--L-PSGLL 264 (622)
T ss_dssp -CTTCCEEECCSSCCSSCCC---CCTTCCEEECCSSC---CSCCC---CCCTTCCEEECCS-SCCSCC-CC--C-CTTCC
T ss_pred -cchhhEEECcCCcccccCC---CCCCCCEEEccCCc---cCcCC---CCCCcCcEEECCC-CCCCcC-Cc--c-cccCc
Confidence 2344444444443 22221 23567777777764 33344 3457788888887 567766 54 3 67899
Q ss_pred EEEEecccCCCCCcccccCCCCCCeEEEecccccC
Q 037494 342 QLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFG 376 (394)
Q Consensus 342 ~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 376 (394)
.|+|++|+++ ..++.+.++++|+.|++++|.+.+
T Consensus 265 ~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 265 SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp EEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCH
T ss_pred EEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCC
Confidence 9999999987 345668899999999998887654
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=1.1e-19 Score=177.49 Aligned_cols=230 Identities=11% Similarity=0.009 Sum_probs=147.3
Q ss_pred CCceEEEEEEeCCcchhhc--cCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCccccc
Q 037494 121 LATVKRCFILEDLIEFISL--EQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLK 198 (394)
Q Consensus 121 ~~~~r~L~l~~~~~~~~~~--~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~ 198 (394)
+.+++.|.+..+....++. ...+++|++|.+.++.... .+++ ..+++|++|++++|.+..+|. .++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----~~~l-~~l~~L~~L~Ls~N~l~~l~~----~~~L~ 102 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-----TLDL-ESLSTLRTLDLNNNYVQELLV----GPSIE 102 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEE-----EEEC-TTCTTCCEEECCSSEEEEEEE----CTTCC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCC-----Cccc-ccCCCCCEEEecCCcCCCCCC----CCCcC
Confidence 3367777777555555442 2567777777777776642 2223 777777777777777665553 26777
Q ss_pred EEecCCCCCccccccccCCCCCcEEEcc-cCCcccc-chhhccCccCcEEEeeCCCCCCC-CCCCCC-CCCcCceeCccc
Q 037494 199 YLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHS-PEGIWMMQKLMHLNFDSITLPAP-PKNYSS-SLKNLIFISALH 274 (394)
Q Consensus 199 ~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~-~p~~l~-~l~~L~~L~~~~ 274 (394)
+|++++|.+..+|.. .+++|++|+++ | .+..+ |..++.+++|++|+++ +|.+.. .|..+. .+++|++|++.+
T Consensus 103 ~L~L~~N~l~~~~~~--~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 103 TLHAANNNISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLK-LNEIDTVNFAELAASSDTLEHLNLQY 178 (487)
T ss_dssp EEECCSSCCCCEEEC--CCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECT-TSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred EEECcCCcCCCCCcc--ccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECC-CCCCCCcChHHHhhhCCcccEEecCC
Confidence 777777777766543 45677777777 6 66555 3456777777777777 776444 334443 577777777777
Q ss_pred cCCCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCC
Q 037494 275 PSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMED 353 (394)
Q Consensus 275 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~ 353 (394)
|..........+++|+.|++++|. ...+|..+..+++|+.|++++ +.+..+ | ++.. +++|+.|++++|.+.+.
T Consensus 179 N~l~~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~~~l~~L~~L~Ls~-N~l~~l-p~~l~~-l~~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 179 NFIYDVKGQVVFAKLKTLDLSSNK---LAFMGPEFQSAAGVTWISLRN-NKLVLI-EKALRF-SQNLEHFDLRGNGFHCG 252 (487)
T ss_dssp SCCCEEECCCCCTTCCEEECCSSC---CCEECGGGGGGTTCSEEECTT-SCCCEE-CTTCCC-CTTCCEEECTTCCBCHH
T ss_pred CccccccccccCCCCCEEECCCCC---CCCCCHhHcCCCCccEEEecC-CcCccc-chhhcc-CCCCCEEEcCCCCCcCc
Confidence 762222344457777777777774 334555566777777777777 566666 6 6666 77777777777776532
Q ss_pred C-cccccCCCCCCeEEEe
Q 037494 354 P-MPMLERLPRLQVMKLK 370 (394)
Q Consensus 354 ~-~~~l~~l~~L~~L~l~ 370 (394)
. +..+..++.|+.++++
T Consensus 253 ~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 253 TLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred chHHHHHhCCCCcEEecc
Confidence 2 2345666666666663
No 67
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.78 E-value=4.4e-19 Score=160.16 Aligned_cols=195 Identities=17% Similarity=0.170 Sum_probs=161.4
Q ss_pred ccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchh-hccCccCcEE
Q 037494 169 ENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEG-IWMMQKLMHL 246 (394)
Q Consensus 169 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~-i~~l~~L~~L 246 (394)
..+++|+.|+++++.+..++ .++.+++|++|++++|.+..++ .++.+++|++|+++ | .+..+|.. ++.+++|++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEE
T ss_pred ccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEE
Confidence 66788999999999988765 4889999999999999998875 78899999999999 8 88888764 6889999999
Q ss_pred EeeCCCCCCCCCCC-CCCCCcCceeCccccC-CCc-chhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCC
Q 037494 247 NFDSITLPAPPKNY-SSSLKNLIFISALHPS-SCT-PDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNG 323 (394)
Q Consensus 247 ~l~~~~~~~~~p~~-l~~l~~L~~L~~~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 323 (394)
+++ +|.+..+|+. ++.+++|++|++.++. ... +..++.+++|+.|++++|. .....+..+..+++|+.|++++
T Consensus 115 ~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~L~~- 190 (272)
T 3rfs_A 115 VLV-ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ--LQSLPEGVFDKLTQLKDLRLYQ- 190 (272)
T ss_dssp ECT-TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCS-
T ss_pred ECC-CCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC--cCccCHHHhcCCccCCEEECCC-
Confidence 999 9997777765 7899999999999988 333 3447889999999999996 4444445578899999999998
Q ss_pred CCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccccCce
Q 037494 324 SKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRK 378 (394)
Q Consensus 324 ~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 378 (394)
+.+..+.| .+.. +++|+.|++++|.+. +.+|+|+.|+++.|.+.+..
T Consensus 191 N~l~~~~~~~~~~-l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~i 238 (272)
T 3rfs_A 191 NQLKSVPDGVFDR-LTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVV 238 (272)
T ss_dssp SCCSCCCTTTTTT-CTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGB
T ss_pred CcCCccCHHHHhC-CcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcc
Confidence 66777733 6788 999999999999864 34678888888777777654
No 68
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.78 E-value=7.5e-19 Score=177.10 Aligned_cols=126 Identities=17% Similarity=0.097 Sum_probs=92.0
Q ss_pred CCceEEEEEEeCCcchhhcc--CCCCCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCCc-ccccCccc
Q 037494 121 LATVKRCFILEDLIEFISLE--QSDMYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQFP-PGLENLFL 196 (394)
Q Consensus 121 ~~~~r~L~l~~~~~~~~~~~--~~~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~ 196 (394)
+..+++|.+..+....++.. ..+++|+.|.+.++.+. .+ ++.|.++++|++|++++|.++.+| ..++++++
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-----~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~ 125 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-----TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 125 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-----EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTT
T ss_pred CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-----CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCC
Confidence 55778888887777766543 67888888888888775 33 444478888888888888888776 45678888
Q ss_pred ccEEecCCCCCccccc-cccCCCCCcEEEcc-cCCccc--cchhhccCccCcEEEeeCCCC
Q 037494 197 LKYLQLNIPTLKCLPL-LICTLLNLETLEMP-AGYIDH--SPEGIWMMQKLMHLNFDSITL 253 (394)
Q Consensus 197 L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~-~~~l~~--lp~~i~~l~~L~~L~l~~~~~ 253 (394)
|++|++++|.++.+|+ .++++++|++|+++ | .+.. +|..++.+++|++|+++ +|.
T Consensus 126 L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~-~N~ 184 (635)
T 4g8a_A 126 LQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLS-SNK 184 (635)
T ss_dssp CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECC-SSC
T ss_pred CCEEECCCCcCCCCChhhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhccc-Ccc
Confidence 8888888888877765 36778888888888 6 5543 45667777777777776 543
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.77 E-value=5.9e-18 Score=152.57 Aligned_cols=196 Identities=23% Similarity=0.204 Sum_probs=152.1
Q ss_pred CccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCc-ccccCcccccEEecCCCCCccccccc-cCCCCCcE
Q 037494 145 YLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFP-PGLENLFLLKYLQLNIPTLKCLPLLI-CTLLNLET 222 (394)
Q Consensus 145 ~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~lp~~l-~~l~~L~~ 222 (394)
..+++.+.++... .+|.- -.+.++.|++++|.+..++ ..++.+++|++|++++|.+..+|..+ ..+++|++
T Consensus 17 ~~~~l~~~~~~l~-----~ip~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~ 89 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-----AIPSN--IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLET 89 (270)
T ss_dssp TTTEEECTTSCCS-----SCCSC--CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCE
T ss_pred CCCEEEccCCCCC-----ccCCC--CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCE
Confidence 4566766666554 23321 1257889999999988776 47888999999999999998888764 77899999
Q ss_pred EEcc-cCCccccchh-hccCccCcEEEeeCCCCCCCCCCC-CCCCCcCceeCccccC-CCcc-hhcCCCCCCCeEEEeec
Q 037494 223 LEMP-AGYIDHSPEG-IWMMQKLMHLNFDSITLPAPPKNY-SSSLKNLIFISALHPS-SCTP-DILSRLPTVQTLRISGD 297 (394)
Q Consensus 223 L~l~-~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~~~~~~-~~~~-~~l~~l~~L~~L~l~~~ 297 (394)
|+++ | .+..+|.. +..+++|++|+++ +|.+..+++. ++.+++|++|++.++. ...+ ..++.+++|+.|++++|
T Consensus 90 L~l~~n-~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 167 (270)
T 2o6q_A 90 LWVTDN-KLQALPIGVFDQLVNLAELRLD-RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN 167 (270)
T ss_dssp EECCSS-CCCCCCTTTTTTCSSCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCC-cCCcCCHhHcccccCCCEEECC-CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC
Confidence 9999 8 88888754 5788999999999 8887777654 6889999999998887 3333 34788899999999988
Q ss_pred CCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCC
Q 037494 298 LSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMED 353 (394)
Q Consensus 298 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~ 353 (394)
. .....+..+..+++|+.|++++ +.+..+.+ .+.. +++|+.|++++|.+.+.
T Consensus 168 ~--l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~-l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 168 Q--LKRVPEGAFDKLTELKTLKLDN-NQLKRVPEGAFDS-LEKLKMLQLQENPWDCT 220 (270)
T ss_dssp C--CSCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTT-CTTCCEEECCSSCBCCS
T ss_pred c--CcEeChhHhccCCCcCEEECCC-CcCCcCCHHHhcc-ccCCCEEEecCCCeeCC
Confidence 5 4433345678889999999998 67888823 5777 89999999999987664
No 70
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.77 E-value=4.1e-18 Score=155.21 Aligned_cols=195 Identities=18% Similarity=0.116 Sum_probs=140.1
Q ss_pred ccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCcccc-ccccCCCCCcEEEcc-cCCccccchhhccCccCcEE
Q 037494 169 ENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLP-LLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHL 246 (394)
Q Consensus 169 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L 246 (394)
.++++++.+++++++++.+|..+. ++++.|++++|.+..++ ..+..+++|++|+++ | .+..+|.. +.+++|++|
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEE
T ss_pred cccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEE
Confidence 667778888888888877776664 57788888888777654 457778888888888 7 77777654 677888888
Q ss_pred EeeCCCCCCCCCCCCCCCCcCceeCccccC-CCc-chhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCC
Q 037494 247 NFDSITLPAPPKNYSSSLKNLIFISALHPS-SCT-PDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGS 324 (394)
Q Consensus 247 ~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 324 (394)
+++ +|.+..+|..++.+++|+.|++.++. ... +..++.+++|+.|++++|. .....+..+..+++|+.|++++ +
T Consensus 83 ~Ls-~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L~~-N 158 (290)
T 1p9a_G 83 DLS-HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE--LKTLPPGLLTPTPKLEKLSLAN-N 158 (290)
T ss_dssp ECC-SSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC--CCCCCTTTTTTCTTCCEEECTT-S
T ss_pred ECC-CCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC--CCccChhhcccccCCCEEECCC-C
Confidence 888 77777777777778888888887777 333 3557777888888888775 3333334456777888888877 6
Q ss_pred CCCccCC--CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccc
Q 037494 325 KLSRMVL--SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSY 374 (394)
Q Consensus 325 ~L~~L~p--~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~ 374 (394)
++..+ | .+.. +++|+.|+|++|+++. .+..+..+++|+.|++++|.+
T Consensus 159 ~l~~l-~~~~~~~-l~~L~~L~L~~N~l~~-ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 159 NLTEL-PAGLLNG-LENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCSCC-CTTTTTT-CTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCB
T ss_pred cCCcc-CHHHhcC-cCCCCEEECCCCcCCc-cChhhcccccCCeEEeCCCCc
Confidence 67777 5 4566 7788888888887753 334455667788888877654
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.77 E-value=2e-19 Score=165.77 Aligned_cols=209 Identities=19% Similarity=0.141 Sum_probs=166.1
Q ss_pred eeEEEcCCCCCC--CCccccc-------CcccccEEecCCCCCc-cccccc--cCCCCCcEEEcc-cCCccccchhhccC
Q 037494 174 LRVLNWGSAVLD--QFPPGLE-------NLFLLKYLQLNIPTLK-CLPLLI--CTLLNLETLEMP-AGYIDHSPEGIWMM 240 (394)
Q Consensus 174 L~~L~l~~~~~~--~lp~~i~-------~l~~L~~L~l~~~~l~-~lp~~l--~~l~~L~~L~l~-~~~l~~lp~~i~~l 240 (394)
|++|+++++.+. .+|..+. ++++|++|++++|.+. .+|..+ +.+++|++|+++ | .+..+|..++.+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHH
Confidence 888899998885 5676665 7999999999999998 688876 899999999999 8 888888888877
Q ss_pred -----ccCcEEEeeCCCCCCCCC-CCCCCCCcCceeCccccC-CC---cchhc--CCCCCCCeEEEeecCCccccchh-h
Q 037494 241 -----QKLMHLNFDSITLPAPPK-NYSSSLKNLIFISALHPS-SC---TPDIL--SRLPTVQTLRISGDLSHYHSGVS-K 307 (394)
Q Consensus 241 -----~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~~~~~~-~~---~~~~l--~~l~~L~~L~l~~~~~~~~~~~~-~ 307 (394)
++|++|+++ +|.+..++ ..++.+++|++|++.++. .. .+..+ +.+++|+.|++++|.-.....++ .
T Consensus 144 ~~~~~~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 222 (312)
T 1wwl_A 144 QQWLKPGLKVLSIA-QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222 (312)
T ss_dssp HTTCCTTCCEEEEE-SCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH
T ss_pred HHhhcCCCcEEEee-CCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHH
Confidence 999999999 99977776 679999999999999987 22 34455 88999999999999622112344 3
Q ss_pred hhcCCCCCcEEEecCCCCCCccCC--CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccccCceeEEeCCC
Q 037494 308 SLCELHKLECLKLVNGSKLSRMVL--SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSG 385 (394)
Q Consensus 308 ~l~~~~~L~~L~l~~~~~L~~L~p--~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~ 385 (394)
.+..+++|+.|++++ +.+....| .+.. +++|+.|++++|+++. .+..+. ++|++|++++|.+.+... ..
T Consensus 223 ~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~-l~~L~~L~Ls~N~l~~-ip~~~~--~~L~~L~Ls~N~l~~~p~----~~ 293 (312)
T 1wwl_A 223 LAAARVQLQGLDLSH-NSLRDAAGAPSCDW-PSQLNSLNLSFTGLKQ-VPKGLP--AKLSVLDLSYNRLDRNPS----PD 293 (312)
T ss_dssp HHHTTCCCSEEECTT-SCCCSSCCCSCCCC-CTTCCEEECTTSCCSS-CCSSCC--SEEEEEECCSSCCCSCCC----TT
T ss_pred HHhcCCCCCEEECCC-CcCCcccchhhhhh-cCCCCEEECCCCccCh-hhhhcc--CCceEEECCCCCCCCChh----Hh
Confidence 446789999999998 66766423 4455 8999999999999863 333343 899999999999887632 34
Q ss_pred CCcCCccc
Q 037494 386 GFPELQVL 393 (394)
Q Consensus 386 ~fp~L~~L 393 (394)
.+++|+.|
T Consensus 294 ~l~~L~~L 301 (312)
T 1wwl_A 294 ELPQVGNL 301 (312)
T ss_dssp TSCEEEEE
T ss_pred hCCCCCEE
Confidence 67777765
No 72
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.77 E-value=1.5e-18 Score=153.58 Aligned_cols=189 Identities=15% Similarity=0.106 Sum_probs=125.0
Q ss_pred ceeEEEcCCCCCCCCcc-cccCcccccEEecCCCC-Cccccc-cccCCCCCcEEEcc-cCCccccch-hhccCccCcEEE
Q 037494 173 YLRVLNWGSAVLDQFPP-GLENLFLLKYLQLNIPT-LKCLPL-LICTLLNLETLEMP-AGYIDHSPE-GIWMMQKLMHLN 247 (394)
Q Consensus 173 ~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~-l~~lp~-~l~~l~~L~~L~l~-~~~l~~lp~-~i~~l~~L~~L~ 247 (394)
.|++|++++|.++.+|+ .++.+++|++|++++|. ++.+|+ .++++++|++|+++ |+.+..+|. .+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 67777777777776654 56677777777777775 766664 46677777777777 456776664 466777777777
Q ss_pred eeCCCCCCCCCCCCCCCCcCc---eeCcccc-C-CCcc-hhcCCCCCCC-eEEEeecCCccccchhhhhcCCCCCcEEEe
Q 037494 248 FDSITLPAPPKNYSSSLKNLI---FISALHP-S-SCTP-DILSRLPTVQ-TLRISGDLSHYHSGVSKSLCELHKLECLKL 320 (394)
Q Consensus 248 l~~~~~~~~~p~~l~~l~~L~---~L~~~~~-~-~~~~-~~l~~l~~L~-~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l 320 (394)
++ +|.+..+|. ++.+++|+ .|++.++ . ...+ ..+..+++|+ .|+++++. . ..+|......++|+.|++
T Consensus 112 l~-~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~--l-~~i~~~~~~~~~L~~L~L 186 (239)
T 2xwt_C 112 IF-NTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG--F-TSVQGYAFNGTKLDAVYL 186 (239)
T ss_dssp EE-EECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC--C-CEECTTTTTTCEEEEEEC
T ss_pred CC-CCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC--C-cccCHhhcCCCCCCEEEc
Confidence 77 777666665 66666666 7777666 4 2222 3366677777 77777774 2 344443333367888888
Q ss_pred cCCCCCCccCC-CCCCCC-CCceEEEEecccCCCCCcccccCCCCCCeEEEe
Q 037494 321 VNGSKLSRMVL-SEYQFP-PSLIQLSLSNTELMEDPMPMLERLPRLQVMKLK 370 (394)
Q Consensus 321 ~~~~~L~~L~p-~~~~~l-~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~ 370 (394)
+++++++.+.+ .+.. + ++|+.|++++|+++..+.. .+++|+.|+++
T Consensus 187 ~~n~~l~~i~~~~~~~-l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~ 234 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGG-VYSGPSLLDVSQTSVTALPSK---GLEHLKELIAR 234 (239)
T ss_dssp TTCTTCCEECTTTTTT-CSBCCSEEECTTCCCCCCCCT---TCTTCSEEECT
T ss_pred CCCCCcccCCHHHhhc-cccCCcEEECCCCccccCChh---HhccCceeecc
Confidence 87445777723 5666 7 7888888888887543322 57778888874
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.77 E-value=1.2e-18 Score=157.52 Aligned_cols=197 Identities=17% Similarity=0.086 Sum_probs=158.7
Q ss_pred CCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCCc-ccccCcccccEEecCCCCCcccc-ccccCCCCC
Q 037494 144 MYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQFP-PGLENLFLLKYLQLNIPTLKCLP-LLICTLLNL 220 (394)
Q Consensus 144 ~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~lp-~~l~~l~~L 220 (394)
+.++.|.+.++... .+ +..|.++++|++|++++|.+..++ ..++.+++|++|++++|.+..++ ..++++++|
T Consensus 28 ~~l~~L~ls~n~l~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (276)
T 2z62_A 28 FSTKNLDLSFNPLR-----HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102 (276)
T ss_dssp TTCCEEECTTCCCC-----EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred CCccEEECCCCccc-----ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccc
Confidence 57999999998876 33 324489999999999999998776 47899999999999999998876 568899999
Q ss_pred cEEEcc-cCCccccch-hhccCccCcEEEeeCCCCCCC--CCCCCCCCCcCceeCccccC-CC-cchhcCCCCCCC----
Q 037494 221 ETLEMP-AGYIDHSPE-GIWMMQKLMHLNFDSITLPAP--PKNYSSSLKNLIFISALHPS-SC-TPDILSRLPTVQ---- 290 (394)
Q Consensus 221 ~~L~l~-~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~--~p~~l~~l~~L~~L~~~~~~-~~-~~~~l~~l~~L~---- 290 (394)
++|+++ | .+..++. .++.+++|++|+++ +|.+.. +|..++.+++|++|++.++. .. .+..+..+++|+
T Consensus 103 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l 180 (276)
T 2z62_A 103 QKLVAVET-NLASLENFPIGHLKTLKELNVA-HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180 (276)
T ss_dssp CEEECTTS-CCCCSTTCCCTTCTTCCEEECC-SSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCE
T ss_pred cEEECCCC-CccccCchhcccCCCCCEEECc-CCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccce
Confidence 999999 8 7877765 68899999999999 998655 67889999999999999987 22 223444444444
Q ss_pred eEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC--CCCCCCCCceEEEEecccCCCC
Q 037494 291 TLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL--SEYQFPPSLIQLSLSNTELMED 353 (394)
Q Consensus 291 ~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p--~~~~~l~~L~~L~L~~~~l~~~ 353 (394)
.|+++++. ...++.......+|+.|++++ +.+..+ | .+.. +++|+.|++++|++.+.
T Consensus 181 ~L~ls~n~---l~~~~~~~~~~~~L~~L~L~~-n~l~~~-~~~~~~~-l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 181 SLDLSLNP---MNFIQPGAFKEIRLKELALDT-NQLKSV-PDGIFDR-LTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp EEECCSSC---CCEECTTSSCSCCEEEEECCS-SCCSCC-CTTTTTT-CCSCCEEECCSSCBCCC
T ss_pred eeecCCCc---ccccCccccCCCcccEEECCC-Cceeec-CHhHhcc-cccccEEEccCCccccc
Confidence 88998885 334444444455899999998 678888 6 5677 99999999999998654
No 74
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.77 E-value=8e-19 Score=161.56 Aligned_cols=224 Identities=15% Similarity=0.148 Sum_probs=170.5
Q ss_pred CCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCC-CCcccc--cCcccccEEecCCCCCccc-c----cc
Q 037494 142 SDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLD-QFPPGL--ENLFLLKYLQLNIPTLKCL-P----LL 213 (394)
Q Consensus 142 ~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-~lp~~i--~~l~~L~~L~l~~~~l~~l-p----~~ 213 (394)
+...++.+.+.+..........+..+ ..+++|++|++++|.+. ..|..+ +.+++|++|++++|.+... | ..
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~ 140 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRV-LAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ 140 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHH-HHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHh-cccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH
Confidence 34457778887776652111122233 34577999999999987 556666 8999999999999998752 2 33
Q ss_pred ccCCCCCcEEEcc-cCCccccc-hhhccCccCcEEEeeCCCCCCC---CC--CCCCCCCcCceeCccccC-CCcch----
Q 037494 214 ICTLLNLETLEMP-AGYIDHSP-EGIWMMQKLMHLNFDSITLPAP---PK--NYSSSLKNLIFISALHPS-SCTPD---- 281 (394)
Q Consensus 214 l~~l~~L~~L~l~-~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~---~p--~~l~~l~~L~~L~~~~~~-~~~~~---- 281 (394)
+..+++|++|+++ | .+..+| ..++.+++|++|+++ +|.+.. ++ ..++.+++|++|.+.+|. ...+.
T Consensus 141 ~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 218 (310)
T 4glp_A 141 QWLKPGLKVLSIAQA-HSPAFSCEQVRAFPALTSLDLS-DNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAA 218 (310)
T ss_dssp TTBCSCCCEEEEECC-SSCCCCTTSCCCCTTCCEEECC-SCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHH
T ss_pred hhhccCCCEEEeeCC-CcchhhHHHhccCCCCCEEECC-CCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHH
Confidence 4579999999999 8 777776 578899999999999 887432 32 334789999999999988 32232
Q ss_pred hcCCCCCCCeEEEeecCCccccchhhhhcCC---CCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCccc
Q 037494 282 ILSRLPTVQTLRISGDLSHYHSGVSKSLCEL---HKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPM 357 (394)
Q Consensus 282 ~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~---~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~ 357 (394)
-++.+++|+.|++++|. .....|..+..+ ++|+.|++++ +.+..+ | .+ +++|+.|+|++|+++.. +.
T Consensus 219 l~~~l~~L~~L~Ls~N~--l~~~~p~~~~~~~~~~~L~~L~Ls~-N~l~~l-p~~~---~~~L~~L~Ls~N~l~~~--~~ 289 (310)
T 4glp_A 219 LAAAGVQPHSLDLSHNS--LRATVNPSAPRCMWSSALNSLNLSF-AGLEQV-PKGL---PAKLRVLDLSSNRLNRA--PQ 289 (310)
T ss_dssp HHHHTCCCSSEECTTSC--CCCCCCSCCSSCCCCTTCCCEECCS-SCCCSC-CSCC---CSCCSCEECCSCCCCSC--CC
T ss_pred HHhcCCCCCEEECCCCC--CCccchhhHHhccCcCcCCEEECCC-CCCCch-hhhh---cCCCCEEECCCCcCCCC--ch
Confidence 24678999999999997 555556666665 6999999998 778888 7 65 47999999999998653 44
Q ss_pred ccCCCCCCeEEEecccccCc
Q 037494 358 LERLPRLQVMKLKRNSYFGR 377 (394)
Q Consensus 358 l~~l~~L~~L~l~~n~~~~~ 377 (394)
+..+++|+.|++++|.+++.
T Consensus 290 ~~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 290 PDELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp TTSCCCCSCEECSSTTTSCC
T ss_pred hhhCCCccEEECcCCCCCCC
Confidence 78899999999999988753
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.77 E-value=2.6e-18 Score=152.04 Aligned_cols=195 Identities=16% Similarity=0.244 Sum_probs=159.4
Q ss_pred CCCCcccccCcccccEEecCCCCCccccc-cccCCCCCcEEEcc-cCCccccch-hhccCccCcEEEeeCC-CCCCCCCC
Q 037494 184 LDQFPPGLENLFLLKYLQLNIPTLKCLPL-LICTLLNLETLEMP-AGYIDHSPE-GIWMMQKLMHLNFDSI-TLPAPPKN 259 (394)
Q Consensus 184 ~~~lp~~i~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~-~~~l~~lp~-~i~~l~~L~~L~l~~~-~~~~~~p~ 259 (394)
++.+|. +.. +|++|++++|.++.+|+ .++.+++|++|+++ |..+..+|. .+..+++|++|+++ + +.+..+|+
T Consensus 23 l~~ip~-~~~--~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~-~~n~l~~i~~ 98 (239)
T 2xwt_C 23 IQRIPS-LPP--STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR-NTRNLTYIDP 98 (239)
T ss_dssp CSSCCC-CCT--TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEE-EETTCCEECT
T ss_pred ccccCC-CCC--cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECC-CCCCeeEcCH
Confidence 677777 443 89999999999999886 68899999999999 833888886 68899999999999 8 77777775
Q ss_pred -CCCCCCcCceeCccccC-CCcchhcCCCCCCC---eEEEeecCCccccchh-hhhcCCCCCc-EEEecCCCCCCccCC-
Q 037494 260 -YSSSLKNLIFISALHPS-SCTPDILSRLPTVQ---TLRISGDLSHYHSGVS-KSLCELHKLE-CLKLVNGSKLSRMVL- 331 (394)
Q Consensus 260 -~l~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~---~L~l~~~~~~~~~~~~-~~l~~~~~L~-~L~l~~~~~L~~L~p- 331 (394)
.++.+++|++|++.++. ...+. ++.+++|+ .|++++|. ....++ ..+..+++|+ .|++++ +.+..+ |
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~--~l~~i~~~~~~~l~~L~~~L~l~~-n~l~~i-~~ 173 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNP--YMTSIPVNAFQGLCNETLTLKLYN-NGFTSV-QG 173 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCT--TCCEECTTTTTTTBSSEEEEECCS-CCCCEE-CT
T ss_pred HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCc--chhhcCcccccchhcceeEEEcCC-CCCccc-CH
Confidence 57899999999999988 44444 88888888 99999983 233343 4688899999 999998 778888 7
Q ss_pred CCCCCCCCceEEEEeccc-CCCCCcccccCC-CCCCeEEEecccccCceeEEeCCCCCcCCccc
Q 037494 332 SEYQFPPSLIQLSLSNTE-LMEDPMPMLERL-PRLQVMKLKRNSYFGRKLACVGSGGFPELQVL 393 (394)
Q Consensus 332 ~~~~~l~~L~~L~L~~~~-l~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~~~~~~fp~L~~L 393 (394)
.... .++|+.|++++|+ ++..+...+..+ ++|+.|++++|.+.... ...|++|+.|
T Consensus 174 ~~~~-~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~-----~~~~~~L~~L 231 (239)
T 2xwt_C 174 YAFN-GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALP-----SKGLEHLKEL 231 (239)
T ss_dssp TTTT-TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCC-----CTTCTTCSEE
T ss_pred hhcC-CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCC-----hhHhccCcee
Confidence 5545 5799999999995 876666678899 99999999999887644 4578888876
No 76
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.76 E-value=9e-18 Score=162.54 Aligned_cols=156 Identities=19% Similarity=0.170 Sum_probs=74.6
Q ss_pred CCceEEEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEE
Q 037494 121 LATVKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYL 200 (394)
Q Consensus 121 ~~~~r~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 200 (394)
+..++.+.+..+....++. ..++|+.|.+.++.... ++.+ .++|++|++++|.++.+| +++.+++|++|
T Consensus 90 ~~~L~~L~l~~n~l~~lp~--~~~~L~~L~l~~n~l~~-----l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L 158 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPE--LPQSLKSLLVDNNNLKA-----LSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKII 158 (454)
T ss_dssp CTTCSEEECCSSCCSSCCC--CCTTCCEEECCSSCCSC-----CCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEE
T ss_pred cCCCCEEEccCCcCCcccc--ccCCCcEEECCCCccCc-----ccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCEE
Confidence 3455666665444444332 23555666555554431 1111 145555555555555555 35555555555
Q ss_pred ecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccC-CC
Q 037494 201 QLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPS-SC 278 (394)
Q Consensus 201 ~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~-~~ 278 (394)
++++|.++.+|..+ .+|++|+++ | .+..+| .++.+++|++|+++ +|....+|... ++|++|++.++. ..
T Consensus 159 ~l~~N~l~~lp~~~---~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~-~N~l~~l~~~~---~~L~~L~l~~n~l~~ 229 (454)
T 1jl5_A 159 DVDNNSLKKLPDLP---PSLEFIAAGNN-QLEELP-ELQNLPFLTAIYAD-NNSLKKLPDLP---LSLESIVAGNNILEE 229 (454)
T ss_dssp ECCSSCCSCCCCCC---TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECC-SSCCSSCCCCC---TTCCEEECCSSCCSS
T ss_pred ECCCCcCcccCCCc---ccccEEECcCC-cCCcCc-cccCCCCCCEEECC-CCcCCcCCCCc---CcccEEECcCCcCCc
Confidence 55555555555332 245555555 4 444454 35555555555555 55444443321 244444444444 22
Q ss_pred cchhcCCCCCCCeEEEeec
Q 037494 279 TPDILSRLPTVQTLRISGD 297 (394)
Q Consensus 279 ~~~~l~~l~~L~~L~l~~~ 297 (394)
.+ .++.+++|+.|++++|
T Consensus 230 lp-~~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 230 LP-ELQNLPFLTTIYADNN 247 (454)
T ss_dssp CC-CCTTCTTCCEEECCSS
T ss_pred cc-ccCCCCCCCEEECCCC
Confidence 22 2444444444444444
No 77
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.74 E-value=1.2e-19 Score=168.86 Aligned_cols=222 Identities=14% Similarity=0.096 Sum_probs=118.6
Q ss_pred CCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCC--CcccccCcccccEEecCCCCCc-cccccccCCCCC
Q 037494 144 MYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQ--FPPGLENLFLLKYLQLNIPTLK-CLPLLICTLLNL 220 (394)
Q Consensus 144 ~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~--lp~~i~~l~~L~~L~l~~~~l~-~lp~~l~~l~~L 220 (394)
++++.+.+.++.... ..+.+ ..+++|++|++++|.+.. +|..+..+++|++|++++|.+. ..|..++.+++|
T Consensus 70 ~~l~~L~l~~n~l~~----~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L 144 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQ----PLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNL 144 (336)
T ss_dssp TTCSEEECTTCEECS----CCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTC
T ss_pred ccceEEEcCCccccc----cchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCC
Confidence 456666665554431 11233 456666666666666552 5555666666666666666655 355556666666
Q ss_pred cEEEcc-cCCcc--ccchhhccCccCcEEEeeCCC-CCCC--CCCCCCCCC-cCceeCccccC-----CCcchhcCCCCC
Q 037494 221 ETLEMP-AGYID--HSPEGIWMMQKLMHLNFDSIT-LPAP--PKNYSSSLK-NLIFISALHPS-----SCTPDILSRLPT 288 (394)
Q Consensus 221 ~~L~l~-~~~l~--~lp~~i~~l~~L~~L~l~~~~-~~~~--~p~~l~~l~-~L~~L~~~~~~-----~~~~~~l~~l~~ 288 (394)
++|+++ |..+. .+|..+..+++|++|+++ +| .+.. ++..++.++ +|++|++.+|. ...+..+..+++
T Consensus 145 ~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~-~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~ 223 (336)
T 2ast_B 145 VRLNLSGCSGFSEFALQTLLSSCSRLDELNLS-WCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN 223 (336)
T ss_dssp SEEECTTCBSCCHHHHHHHHHHCTTCCEEECC-CCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTT
T ss_pred CEEECCCCCCCCHHHHHHHHhcCCCCCEEcCC-CCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCC
Confidence 666666 53344 245556666666666666 65 3332 333455566 66666666652 222344455666
Q ss_pred CCeEEEeecCCccc-cchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCe
Q 037494 289 VQTLRISGDLSHYH-SGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQV 366 (394)
Q Consensus 289 L~~L~l~~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~ 366 (394)
|+.|++++|. .. ...+..+..+++|+.|++++|..+..-.. .+.. +++|+.|++++| +....+..+. .+|..
T Consensus 224 L~~L~l~~~~--~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~-i~~~~~~~l~--~~l~~ 297 (336)
T 2ast_B 224 LVHLDLSDSV--MLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE-IPTLKTLQVFGI-VPDGTLQLLK--EALPH 297 (336)
T ss_dssp CSEEECTTCT--TCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGG-CTTCCEEECTTS-SCTTCHHHHH--HHSTT
T ss_pred CCEEeCCCCC--cCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhc-CCCCCEEeccCc-cCHHHHHHHH--hhCcc
Confidence 6666666664 11 23344556666666666666432221100 2444 666666666666 3333333222 12444
Q ss_pred EEEecccccCc
Q 037494 367 MKLKRNSYFGR 377 (394)
Q Consensus 367 L~l~~n~~~~~ 377 (394)
|++++|.+++.
T Consensus 298 L~l~~n~l~~~ 308 (336)
T 2ast_B 298 LQINCSHFTTI 308 (336)
T ss_dssp SEESCCCSCCT
T ss_pred eEEecccCccc
Confidence 44655555543
No 78
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=6.7e-18 Score=153.88 Aligned_cols=173 Identities=19% Similarity=0.162 Sum_probs=94.6
Q ss_pred ccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEE
Q 037494 169 ENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLN 247 (394)
Q Consensus 169 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~ 247 (394)
..+++|+.|++++|.+..++. ++.+++|++|++++|.+..+++ ++.+++|++|+++ | .+..+|. ++.+++|++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEE
T ss_pred hhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEE
Confidence 344555566666665555533 5555666666666665555554 5556666666666 5 5555443 55556666666
Q ss_pred eeCCCCCCCCCCCCCCCCcCceeCccccCCCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCC
Q 037494 248 FDSITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLS 327 (394)
Q Consensus 248 l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~ 327 (394)
++ +|.+..+ +.++.+++|+.|++.++.......++.+++|+.|++++|. .. .++. +..+++|+.|++++ +.+.
T Consensus 119 L~-~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~--l~-~~~~-l~~l~~L~~L~L~~-N~i~ 191 (291)
T 1h6t_A 119 LE-HNGISDI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQ--IS-DIVP-LAGLTKLQNLYLSK-NHIS 191 (291)
T ss_dssp CT-TSCCCCC-GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC--CC-CCGG-GTTCTTCCEEECCS-SCCC
T ss_pred CC-CCcCCCC-hhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCc--cc-cchh-hcCCCccCEEECCC-CcCC
Confidence 66 5554443 2455555555555555552222455556666666666654 22 2222 55566666666665 4455
Q ss_pred ccCCCCCCCCCCceEEEEecccCCCCC
Q 037494 328 RMVLSEYQFPPSLIQLSLSNTELMEDP 354 (394)
Q Consensus 328 ~L~p~~~~~l~~L~~L~L~~~~l~~~~ 354 (394)
.+ |.+.. +++|+.|++++|++...+
T Consensus 192 ~l-~~l~~-l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 192 DL-RALAG-LKNLDVLELFSQECLNKP 216 (291)
T ss_dssp BC-GGGTT-CTTCSEEEEEEEEEECCC
T ss_pred CC-hhhcc-CCCCCEEECcCCcccCCc
Confidence 54 44444 666666666666654433
No 79
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.74 E-value=4.6e-17 Score=157.59 Aligned_cols=137 Identities=14% Similarity=0.110 Sum_probs=72.7
Q ss_pred CceEEEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEe
Q 037494 122 ATVKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQ 201 (394)
Q Consensus 122 ~~~r~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 201 (394)
..++.+.+..+....++.. .++|+.|.+.++... .++++ ..+++|++|++++|.++.+|..+ .+|++|+
T Consensus 111 ~~L~~L~l~~n~l~~l~~~--~~~L~~L~L~~n~l~-----~lp~~-~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~ 179 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDL--PPLLEYLGVSNNQLE-----KLPEL-QNSSFLKIIDVDNNSLKKLPDLP---PSLEFIA 179 (454)
T ss_dssp TTCCEEECCSSCCSCCCSC--CTTCCEEECCSSCCS-----SCCCC-TTCTTCCEEECCSSCCSCCCCCC---TTCCEEE
T ss_pred CCCcEEECCCCccCcccCC--CCCCCEEECcCCCCC-----CCccc-CCCCCCCEEECCCCcCcccCCCc---ccccEEE
Confidence 4566666664444333321 246666666666554 23333 66666666666666666555433 3566666
Q ss_pred cCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccC
Q 037494 202 LNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPS 276 (394)
Q Consensus 202 l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~ 276 (394)
+++|.+..+| .++++++|++|+++ | .+..+|.. .++|++|+++ +|.+..+| .++.+++|++|++.++.
T Consensus 180 L~~n~l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~~---~~~L~~L~l~-~n~l~~lp-~~~~l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 180 AGNNQLEELP-ELQNLPFLTAIYADNN-SLKKLPDL---PLSLESIVAG-NNILEELP-ELQNLPFLTTIYADNNL 248 (454)
T ss_dssp CCSSCCSSCC-CCTTCTTCCEEECCSS-CCSSCCCC---CTTCCEEECC-SSCCSSCC-CCTTCTTCCEEECCSSC
T ss_pred CcCCcCCcCc-cccCCCCCCEEECCCC-cCCcCCCC---cCcccEEECc-CCcCCccc-ccCCCCCCCEEECCCCc
Confidence 6666665555 45556666666555 5 44444432 1345555555 55444444 24455555555554443
No 80
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.73 E-value=4.4e-19 Score=168.36 Aligned_cols=232 Identities=15% Similarity=0.098 Sum_probs=162.9
Q ss_pred CCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCC----CCcccc-------cCcccccEEecCCCCCcc
Q 037494 141 QSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLD----QFPPGL-------ENLFLLKYLQLNIPTLKC 209 (394)
Q Consensus 141 ~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~----~lp~~i-------~~l~~L~~L~l~~~~l~~ 209 (394)
..+++|+.|.+.++.........+...+..+++|++|++++|.+. .+|..+ ..+++|++|++++|.+..
T Consensus 29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 456778888888886653212223344478889999999887655 334444 678889999999888775
Q ss_pred -----ccccccCCCCCcEEEcc-cCCccc-----cchhhccC---------ccCcEEEeeCCCCCC--CCC---CCCCCC
Q 037494 210 -----LPLLICTLLNLETLEMP-AGYIDH-----SPEGIWMM---------QKLMHLNFDSITLPA--PPK---NYSSSL 264 (394)
Q Consensus 210 -----lp~~l~~l~~L~~L~l~-~~~l~~-----lp~~i~~l---------~~L~~L~l~~~~~~~--~~p---~~l~~l 264 (394)
+|..+..+++|++|+++ | .+.. ++..+..+ ++|++|+++ +|.+. .+| ..++.+
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~-~n~l~~~~~~~l~~~l~~~ 186 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG-RNRLENGSMKEWAKTFQSH 186 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC-SSCCTGGGHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECC-CCCCCcHHHHHHHHHHHhC
Confidence 77778888899999998 7 6542 33334444 889999998 87753 333 345677
Q ss_pred CcCceeCccccCCC------cch-hcCCCCCCCeEEEeecCCccc----cchhhhhcCCCCCcEEEecCCCCCCccC---
Q 037494 265 KNLIFISALHPSSC------TPD-ILSRLPTVQTLRISGDLSHYH----SGVSKSLCELHKLECLKLVNGSKLSRMV--- 330 (394)
Q Consensus 265 ~~L~~L~~~~~~~~------~~~-~l~~l~~L~~L~l~~~~~~~~----~~~~~~l~~~~~L~~L~l~~~~~L~~L~--- 330 (394)
++|++|.+.+|... ..+ .+..+++|+.|++++|. .. ..++..+..+++|+.|+|++ +.+....
T Consensus 187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~--l~~~g~~~l~~~l~~~~~L~~L~L~~-n~i~~~~~~~ 263 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT--FTHLGSSALAIALKSWPNLRELGLND-CLLSARGAAA 263 (386)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC--CHHHHHHHHHHHGGGCTTCCEEECTT-CCCCHHHHHH
T ss_pred CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC--CCcHHHHHHHHHHccCCCcCEEECCC-CCCchhhHHH
Confidence 78889988888722 233 77788889999998886 43 56777888888999999987 3343320
Q ss_pred -C-CC--CCCCCCceEEEEecccCCCC----Ccccc-cCCCCCCeEEEecccccCce
Q 037494 331 -L-SE--YQFPPSLIQLSLSNTELMED----PMPML-ERLPRLQVMKLKRNSYFGRK 378 (394)
Q Consensus 331 -p-~~--~~~l~~L~~L~L~~~~l~~~----~~~~l-~~l~~L~~L~l~~n~~~~~~ 378 (394)
| ++ +. +++|+.|+|++|.+... .+..+ .++++|++|++++|.+++..
T Consensus 264 l~~~l~~~~-~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 264 VVDAFSKLE-NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHTCS-SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHhhcc-CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 3 33 44 68899999999987552 33344 56889999999888877654
No 81
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.73 E-value=2.2e-17 Score=165.04 Aligned_cols=230 Identities=16% Similarity=0.047 Sum_probs=158.3
Q ss_pred ceEEEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEec
Q 037494 123 TVKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQL 202 (394)
Q Consensus 123 ~~r~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l 202 (394)
.++.+.+..+....+|.... ++|+.|.+.++... .++. .+++|++|++++|.++.+|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~-----~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT-----SLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCS-----CCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEE
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCC-----CCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEEC
Confidence 46677777666666666533 89999999999876 3443 57899999999999999987 7799999999
Q ss_pred CCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccC-CCcc
Q 037494 203 NIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPS-SCTP 280 (394)
Q Consensus 203 ~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~-~~~~ 280 (394)
++|.++.+|. .+.+|++|+++ | .+..+|.. +++|++|+++ +|.+..+|..+ ++|+.|.+.++. ...+
T Consensus 109 s~N~l~~l~~---~l~~L~~L~L~~N-~l~~lp~~---l~~L~~L~Ls-~N~l~~l~~~~---~~L~~L~L~~N~l~~l~ 177 (622)
T 3g06_A 109 FSNPLTHLPA---LPSGLCKLWIFGN-QLTSLPVL---PPGLQELSVS-DNQLASLPALP---SELCKLWAYNNQLTSLP 177 (622)
T ss_dssp CSCCCCCCCC---CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECC-SSCCSCCCCCC---TTCCEEECCSSCCSCCC
T ss_pred cCCcCCCCCC---CCCCcCEEECCCC-CCCcCCCC---CCCCCEEECc-CCcCCCcCCcc---CCCCEEECCCCCCCCCc
Confidence 9999999987 57899999999 8 89999874 5899999999 99877777543 344555554444 2222
Q ss_pred hhcCCCCCCCeEEEeecCCc-----------------cccchhhhhcCCCCCcEEEecCCCCCCccCCCCCCCCCCceEE
Q 037494 281 DILSRLPTVQTLRISGDLSH-----------------YHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLIQL 343 (394)
Q Consensus 281 ~~l~~l~~L~~L~l~~~~~~-----------------~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p~~~~~l~~L~~L 343 (394)
..+++|+.|++++|.-. ....+|. .+++|+.|++++ +++..+ | .. +++|+.|
T Consensus 178 ---~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~---~~~~L~~L~Ls~-N~L~~l-p--~~-l~~L~~L 246 (622)
T 3g06_A 178 ---MLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPA---LPSGLKELIVSG-NRLTSL-P--VL-PSELKEL 246 (622)
T ss_dssp ---CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC---CCTTCCEEECCS-SCCSCC-C--CC-CTTCCEE
T ss_pred ---ccCCCCcEEECCCCCCCCCCCccchhhEEECcCCcccccCC---CCCCCCEEEccC-CccCcC-C--CC-CCcCcEE
Confidence 23344555555444300 1122221 135667777766 456655 4 33 6778888
Q ss_pred EEecccCCCCCcccccCCCCCCeEEEecccccCceeEEeCCCCCcCCccc
Q 037494 344 SLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQVL 393 (394)
Q Consensus 344 ~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~fp~L~~L 393 (394)
+|++|+++..+ . .+++|+.|++++|.+.... .. ...+++|+.|
T Consensus 247 ~Ls~N~L~~lp--~--~~~~L~~L~Ls~N~L~~lp--~~-l~~l~~L~~L 289 (622)
T 3g06_A 247 MVSGNRLTSLP--M--LPSGLLSLSVYRNQLTRLP--ES-LIHLSSETTV 289 (622)
T ss_dssp ECCSSCCSCCC--C--CCTTCCEEECCSSCCCSCC--GG-GGGSCTTCEE
T ss_pred ECCCCCCCcCC--c--ccccCcEEeCCCCCCCcCC--HH-HhhccccCEE
Confidence 88888875422 2 5688889999888776332 11 2346666654
No 82
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=6e-17 Score=147.55 Aligned_cols=189 Identities=19% Similarity=0.197 Sum_probs=156.4
Q ss_pred EEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCC
Q 037494 176 VLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLP 254 (394)
Q Consensus 176 ~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~ 254 (394)
.+.+....+..+. ....+.+|++|++++|.++.+| .++.+++|++|+++ | .+..++. +..+++|++|+++ +|.+
T Consensus 28 ~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~-~n~l 102 (291)
T 1h6t_A 28 KDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLD-ENKV 102 (291)
T ss_dssp HHHTTCSCTTSEE-CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECC-SSCC
T ss_pred HHHhcCCCccccc-chhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECC-CCcC
Confidence 3445666555432 3567899999999999999987 58899999999999 8 8888887 9999999999999 9987
Q ss_pred CCCCCCCCCCCcCceeCccccCCCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCCCCC
Q 037494 255 APPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEY 334 (394)
Q Consensus 255 ~~~p~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p~~~ 334 (394)
..+| .++.+++|++|++.++.....+.+..+++|+.|++++|. .. .+ ..+..+++|+.|++++ +.+..+ +.+.
T Consensus 103 ~~~~-~l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~--l~-~~-~~l~~l~~L~~L~L~~-N~l~~~-~~l~ 175 (291)
T 1h6t_A 103 KDLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNK--IT-DI-TVLSRLTKLDTLSLED-NQISDI-VPLA 175 (291)
T ss_dssp CCGG-GGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSC--CC-CC-GGGGGCTTCSEEECCS-SCCCCC-GGGT
T ss_pred CCCh-hhccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCc--CC-cc-hhhccCCCCCEEEccC-Cccccc-hhhc
Confidence 7765 489999999999999984445778999999999999996 32 33 5788999999999998 667776 4466
Q ss_pred CCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccccCcee
Q 037494 335 QFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKL 379 (394)
Q Consensus 335 ~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 379 (394)
. +++|+.|++++|.+.. ++.+..+++|+.|++++|.+.....
T Consensus 176 ~-l~~L~~L~L~~N~i~~--l~~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 176 G-LTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp T-CTTCCEEECCSSCCCB--CGGGTTCTTCSEEEEEEEEEECCCE
T ss_pred C-CCccCEEECCCCcCCC--ChhhccCCCCCEEECcCCcccCCcc
Confidence 6 8999999999999854 4668999999999999998766443
No 83
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=1.2e-17 Score=166.74 Aligned_cols=143 Identities=20% Similarity=0.196 Sum_probs=69.3
Q ss_pred CCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCc
Q 037494 142 SDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLE 221 (394)
Q Consensus 142 ~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~ 221 (394)
.+.+|+.|.+.++... .++.+ ..+++|+.|++++|.+..+++ ++.+++|+.|+|++|.+..+| .++.+++|+
T Consensus 41 ~L~~L~~L~l~~n~i~-----~l~~l-~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~ 112 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIK-----SVQGI-QYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLK 112 (605)
T ss_dssp HHTTCCCCBCTTCCCC-----CCTTG-GGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCC
T ss_pred cCCCCCEEECcCCCCC-----CChHH-ccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCC
Confidence 3444555555444443 22333 555555555555555554444 555555555555555555444 455555555
Q ss_pred EEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccC-CCcchhcCCCCCCCeEEEeec
Q 037494 222 TLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPS-SCTPDILSRLPTVQTLRISGD 297 (394)
Q Consensus 222 ~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~ 297 (394)
+|+|+ | .+..+| .+..+++|+.|+++ +|.+..+ +.++.+++|+.|++.+|. ...+. +..+++|+.|++++|
T Consensus 113 ~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls-~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 113 SLSLEHN-GISDIN-GLVHLPQLESLYLG-NNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKN 185 (605)
T ss_dssp EEECTTS-CCCCCG-GGGGCTTCSEEECC-SSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred EEEecCC-CCCCCc-cccCCCccCEEECC-CCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCC
Confidence 55555 4 444443 34555555555555 5544433 334444555555554444 11111 444445555555444
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.72 E-value=1.5e-16 Score=141.66 Aligned_cols=174 Identities=17% Similarity=0.127 Sum_probs=137.4
Q ss_pred CceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccc-cccCCCCCcEEEcc-cCCccccch-hhccCccCcEEEe
Q 037494 172 KYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPL-LICTLLNLETLEMP-AGYIDHSPE-GIWMMQKLMHLNF 248 (394)
Q Consensus 172 ~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~-~~~l~~lp~-~i~~l~~L~~L~l 248 (394)
...++++++++.++.+|..+. .+++.|++++|.+..+++ .++++++|++|+++ | .+..+++ .+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEEC
Confidence 457789999999999998776 589999999999987764 58899999999999 8 7877765 4788999999999
Q ss_pred eCCCCCCCCCCC-CCCCCcCceeCccccC-CCcc-hhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCC
Q 037494 249 DSITLPAPPKNY-SSSLKNLIFISALHPS-SCTP-DILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSK 325 (394)
Q Consensus 249 ~~~~~~~~~p~~-l~~l~~L~~L~~~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 325 (394)
+ +|.+..+|+. ++.+++|++|++.++. ...+ ..++.+++|+.|++++|. .....+..+..+++|+.|++++ +.
T Consensus 91 ~-~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~L~~-N~ 166 (251)
T 3m19_A 91 A-NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ--LQSIPAGAFDKLTNLQTLSLST-NQ 166 (251)
T ss_dssp T-TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCS-SC
T ss_pred C-CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc--CCccCHHHcCcCcCCCEEECCC-Cc
Confidence 9 9987777754 6888999999988887 3333 346778888888888885 3333334677788888888887 66
Q ss_pred CCccCC-CCCCCCCCceEEEEecccCCCC
Q 037494 326 LSRMVL-SEYQFPPSLIQLSLSNTELMED 353 (394)
Q Consensus 326 L~~L~p-~~~~~l~~L~~L~L~~~~l~~~ 353 (394)
+..+.| .+.. +++|+.|++++|++.+.
T Consensus 167 l~~~~~~~~~~-l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 167 LQSVPHGAFDR-LGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CSCCCTTTTTT-CTTCCEEECCSCCBCTT
T ss_pred CCccCHHHHhC-CCCCCEEEeeCCceeCC
Confidence 777723 6667 88888888888887665
No 85
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=2.3e-17 Score=164.70 Aligned_cols=180 Identities=21% Similarity=0.174 Sum_probs=128.1
Q ss_pred ccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEE
Q 037494 169 ENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLN 247 (394)
Q Consensus 169 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~ 247 (394)
..+++|+.|+++++.+..++ .++.+++|+.|+|++|.+..+|+ ++.+++|+.|+|+ | .+..+| .+..+++|++|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEE
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEE
Confidence 56677788888888877776 47778888888888888877775 7778888888888 7 777765 577788888888
Q ss_pred eeCCCCCCCCCCCCCCCCcCceeCccccCCCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCC
Q 037494 248 FDSITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLS 327 (394)
Q Consensus 248 l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~ 327 (394)
++ +|.+..+ +.++.+++|+.|++..|.......++.+++|+.|++++|. .....+ +..+++|+.|+|++ +.+.
T Consensus 116 Ls-~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~--l~~~~~--l~~l~~L~~L~Ls~-N~i~ 188 (605)
T 1m9s_A 116 LE-HNGISDI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQ--ISDIVP--LAGLTKLQNLYLSK-NHIS 188 (605)
T ss_dssp CT-TSCCCCC-GGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSC--CCCCGG--GTTCTTCCEEECCS-SCCC
T ss_pred ec-CCCCCCC-ccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCc--CCCchh--hccCCCCCEEECcC-CCCC
Confidence 88 7776665 3577777888888877773333667777888888887775 333223 67777888888877 5566
Q ss_pred ccCCCCCCCCCCceEEEEecccCCCCCcccccCC
Q 037494 328 RMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERL 361 (394)
Q Consensus 328 ~L~p~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l 361 (394)
.+ |.+.. +++|+.|+|++|++...+...+..+
T Consensus 189 ~l-~~l~~-l~~L~~L~L~~N~l~~~p~~~~~~l 220 (605)
T 1m9s_A 189 DL-RALAG-LKNLDVLELFSQECLNKPINHQSNL 220 (605)
T ss_dssp BC-GGGTT-CTTCSEEECCSEEEECCCCCCCSSC
T ss_pred CC-hHHcc-CCCCCEEEccCCcCcCCcccccccE
Confidence 65 55555 7778888888877765554444433
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.70 E-value=2.9e-16 Score=139.90 Aligned_cols=147 Identities=20% Similarity=0.176 Sum_probs=87.9
Q ss_pred CceeEEEcCCCCCCCCc-ccccCcccccEEecCCCCCcccccc-ccCCCCCcEEEcc-cCCccccch-hhccCccCcEEE
Q 037494 172 KYLRVLNWGSAVLDQFP-PGLENLFLLKYLQLNIPTLKCLPLL-ICTLLNLETLEMP-AGYIDHSPE-GIWMMQKLMHLN 247 (394)
Q Consensus 172 ~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~-~~~l~~lp~-~i~~l~~L~~L~ 247 (394)
+.++.|++++|.+..++ ..++.+++|++|++++|.+..+++. +..+++|++|+++ | .+..+|. .+..+++|++|+
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-cccccChhHhcccCCCCEEE
Confidence 45666666666666543 3566666666666666666655433 5666666666666 5 5655553 345666666666
Q ss_pred eeCCCCCCCCCCC-CCCCCcCceeCccccC-CCcc-hhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecC
Q 037494 248 FDSITLPAPPKNY-SSSLKNLIFISALHPS-SCTP-DILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVN 322 (394)
Q Consensus 248 l~~~~~~~~~p~~-l~~l~~L~~L~~~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 322 (394)
++ +|.+..+|+. ++.+++|++|++.++. ...+ ..++.+++|+.|++++|. .....+..+..+++|+.|++++
T Consensus 114 L~-~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 114 LG-GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ--LQSVPHGAFDRLGKLQTITLFG 188 (251)
T ss_dssp CC-SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CSCCCTTTTTTCTTCCEEECCS
T ss_pred cC-CCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc--CCccCHHHHhCCCCCCEEEeeC
Confidence 66 6665555554 4566666666666665 2222 246666666666666664 3333333555666666666665
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.67 E-value=2.1e-18 Score=160.34 Aligned_cols=218 Identities=15% Similarity=0.139 Sum_probs=174.3
Q ss_pred CccEEEEecCCCccchhcchhHHhccC--CceeEEEcCCCCCCCCcccccCcccccEEecCCCCCcc--ccccccCCCCC
Q 037494 145 YLQSFLNHSSESDHLALIDCENFCENF--KYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKC--LPLLICTLLNL 220 (394)
Q Consensus 145 ~lr~L~l~~~~~~~~~~~~l~~~~~~l--~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~--lp~~l~~l~~L 220 (394)
.++.+.+.++... +..+..+ +++++|+++++.+...+..+..+++|++|++++|.+.. +|..+..+++|
T Consensus 48 ~~~~l~l~~~~~~-------~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L 120 (336)
T 2ast_B 48 LWQTLDLTGKNLH-------PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 120 (336)
T ss_dssp TSSEEECTTCBCC-------HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred hheeeccccccCC-------HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCC
Confidence 4778888876654 4444666 89999999999998777778899999999999998763 78888999999
Q ss_pred cEEEcc-cCCcc-ccchhhccCccCcEEEeeCCCC-CC--CCCCCCCCCCcCceeCcccc-C-C--CcchhcCCCC-CCC
Q 037494 221 ETLEMP-AGYID-HSPEGIWMMQKLMHLNFDSITL-PA--PPKNYSSSLKNLIFISALHP-S-S--CTPDILSRLP-TVQ 290 (394)
Q Consensus 221 ~~L~l~-~~~l~-~lp~~i~~l~~L~~L~l~~~~~-~~--~~p~~l~~l~~L~~L~~~~~-~-~--~~~~~l~~l~-~L~ 290 (394)
++|+++ | .+. ..|..++.+++|++|+++ +|. .. .++..++.+++|++|++.+| . . ..+..+..++ +|+
T Consensus 121 ~~L~L~~~-~l~~~~~~~l~~~~~L~~L~L~-~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~ 198 (336)
T 2ast_B 121 QNLSLEGL-RLSDPIVNTLAKNSNLVRLNLS-GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT 198 (336)
T ss_dssp SEEECTTC-BCCHHHHHHHTTCTTCSEEECT-TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC
T ss_pred CEEeCcCc-ccCHHHHHHHhcCCCCCEEECC-CCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCC
Confidence 999999 8 555 567789999999999999 884 44 25555778999999999999 5 2 2566688899 999
Q ss_pred eEEEeecCCccc-cchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEeccc-CCCCCcccccCCCCCCeE
Q 037494 291 TLRISGDLSHYH-SGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTE-LMEDPMPMLERLPRLQVM 367 (394)
Q Consensus 291 ~L~l~~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~-l~~~~~~~l~~l~~L~~L 367 (394)
.|++++|..... ..++..+..+++|+.|++++|..+..-.+ .+.. +++|+.|++++|. +....+..++++++|+.|
T Consensus 199 ~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 277 (336)
T 2ast_B 199 QLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCYDIIPETLLELGEIPTLKTL 277 (336)
T ss_dssp EEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG-CTTCCEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred EEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhC-CCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEE
Confidence 999999841122 56777888999999999998554543214 7777 8999999999995 333334468899999999
Q ss_pred EEecc
Q 037494 368 KLKRN 372 (394)
Q Consensus 368 ~l~~n 372 (394)
++++|
T Consensus 278 ~l~~~ 282 (336)
T 2ast_B 278 QVFGI 282 (336)
T ss_dssp ECTTS
T ss_pred eccCc
Confidence 99877
No 88
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.67 E-value=5.3e-16 Score=156.24 Aligned_cols=202 Identities=18% Similarity=0.200 Sum_probs=155.9
Q ss_pred ccCCceeEEEcCCCCCC---CCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccc-hhhccCccC
Q 037494 169 ENFKYLRVLNWGSAVLD---QFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSP-EGIWMMQKL 243 (394)
Q Consensus 169 ~~l~~L~~L~l~~~~~~---~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp-~~i~~l~~L 243 (394)
..++.|++|++++|.+. ..+.....+.+|+++++..+.+..++..+..+.+|+.+++. +......+ ..+..++++
T Consensus 368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l 447 (635)
T 4g8a_A 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447 (635)
T ss_dssp CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred ccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccc
Confidence 46778888888888765 34556667788888888888877777778888889999888 62333333 346778889
Q ss_pred cEEEeeCCCCCCCC-CCCCCCCCcCceeCccccC---CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEE
Q 037494 244 MHLNFDSITLPAPP-KNYSSSLKNLIFISALHPS---SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLK 319 (394)
Q Consensus 244 ~~L~l~~~~~~~~~-p~~l~~l~~L~~L~~~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~ 319 (394)
+.++++ .+..... +..+..+++|+.|.+.++. ...+..+..+++|+.|++++|. .....|..+..+++|+.|+
T Consensus 448 ~~l~ls-~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~--L~~l~~~~f~~l~~L~~L~ 524 (635)
T 4g8a_A 448 IYLDIS-HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ--LEQLSPTAFNSLSSLQVLN 524 (635)
T ss_dssp CEEECT-TSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC--CCEECTTTTTTCTTCCEEE
T ss_pred cccccc-ccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc--cCCcChHHHcCCCCCCEEE
Confidence 999988 8774443 4456788889999988876 3355678888999999999986 5555677888899999999
Q ss_pred ecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccCC-CCCCeEEEeccccc
Q 037494 320 LVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERL-PRLQVMKLKRNSYF 375 (394)
Q Consensus 320 l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l-~~L~~L~l~~n~~~ 375 (394)
|++ +++..+.| .+.. +++|+.|+|++|+++...+..+..+ ++|+.|++++|.+.
T Consensus 525 Ls~-N~l~~l~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 525 MSH-NNFFSLDTFPYKC-LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp CTT-SCCCBCCCGGGTT-CTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CCC-CcCCCCChhHHhC-CCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 988 67888844 6777 8999999999999888777788887 57999999887653
No 89
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=1.3e-16 Score=143.03 Aligned_cols=170 Identities=16% Similarity=0.139 Sum_probs=112.9
Q ss_pred CCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEee
Q 037494 171 FKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFD 249 (394)
Q Consensus 171 l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~ 249 (394)
+..+..++++++.++.++ .+..+++|++|++++|.++.+| .++.+++|++|+++ | .+..+|. +..+++|++|+++
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECC
Confidence 445555666777666665 4666777777777777777776 66677777777777 6 6766666 6777777777777
Q ss_pred CCCCCCCCCCCCCCCCcCceeCccccCCCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCcc
Q 037494 250 SITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRM 329 (394)
Q Consensus 250 ~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L 329 (394)
+|.+..+|.... ++|+.|++.++.....+.++.+++|+.|++++|. ...++ .+..+++|+.|++++ +.+..+
T Consensus 94 -~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~---i~~~~-~l~~l~~L~~L~L~~-N~i~~~ 165 (263)
T 1xeu_A 94 -RNRLKNLNGIPS--ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNK---LKSIV-MLGFLSKLEVLDLHG-NEITNT 165 (263)
T ss_dssp -SSCCSCCTTCCC--SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSC---CCBCG-GGGGCTTCCEEECTT-SCCCBC
T ss_pred -CCccCCcCcccc--CcccEEEccCCccCCChhhcCcccccEEECCCCc---CCCCh-HHccCCCCCEEECCC-CcCcch
Confidence 776666654333 6777777777663334457777777777777774 22233 566777777777776 555555
Q ss_pred CCCCCCCCCCceEEEEecccCCCCC
Q 037494 330 VLSEYQFPPSLIQLSLSNTELMEDP 354 (394)
Q Consensus 330 ~p~~~~~l~~L~~L~L~~~~l~~~~ 354 (394)
+.+.. +++|+.|++++|++...+
T Consensus 166 -~~l~~-l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 166 -GGLTR-LKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp -TTSTT-CCCCCEEEEEEEEEECCC
T ss_pred -HHhcc-CCCCCEEeCCCCcccCCc
Confidence 45555 777788888777765544
No 90
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.66 E-value=1e-15 Score=151.35 Aligned_cols=159 Identities=17% Similarity=0.188 Sum_probs=74.4
Q ss_pred CceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeC
Q 037494 172 KYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDS 250 (394)
Q Consensus 172 ~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~ 250 (394)
++|++|++++|.++.+| +.+++|++|++++|.++.+|. +++ +|++|+++ | .+..+|. .+++|++|+++
T Consensus 80 ~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls- 148 (571)
T 3cvr_A 80 PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN-QLTMLPE---LPALLEYINAD- 148 (571)
T ss_dssp TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS-CCSCCCC---CCTTCCEEECC-
T ss_pred CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC-cCCCCCC---cCccccEEeCC-
Confidence 44555555555555554 234555555555555555554 333 55555555 4 4444544 34555555555
Q ss_pred CCCCCCCCCCCCCCCcCceeCccccC-CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCC-------cEEEecC
Q 037494 251 ITLPAPPKNYSSSLKNLIFISALHPS-SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKL-------ECLKLVN 322 (394)
Q Consensus 251 ~~~~~~~p~~l~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L-------~~L~l~~ 322 (394)
+|.+..+|. .+++|++|++.+|. ...+. ++ ++|+.|++++|. ...+|. +.. +| +.|++++
T Consensus 149 ~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~---L~~lp~-~~~--~L~~~~~~L~~L~Ls~ 216 (571)
T 3cvr_A 149 NNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL---LESLPA-VPV--RNHHSEETEIFFRCRE 216 (571)
T ss_dssp SSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC---CSSCCC-CC----------CCEEEECCS
T ss_pred CCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC---CCchhh-HHH--hhhcccccceEEecCC
Confidence 555444443 34455555555544 22222 33 455555555553 223333 221 33 5555544
Q ss_pred CCCCCccCC-CCCCCCCCceEEEEecccCCCCCcc
Q 037494 323 GSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMP 356 (394)
Q Consensus 323 ~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~ 356 (394)
+.+..+ | ++.. +++|+.|+|++|++....+.
T Consensus 217 -N~l~~l-p~~l~~-l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 217 -NRITHI-PENILS-LDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp -SCCCCC-CGGGGG-SCTTEEEECCSSSCCHHHHH
T ss_pred -Ccceec-CHHHhc-CCCCCEEEeeCCcCCCcCHH
Confidence 444444 4 4444 45555555555554443333
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.65 E-value=8e-17 Score=148.15 Aligned_cols=197 Identities=14% Similarity=0.031 Sum_probs=137.0
Q ss_pred CCCCccEEEEecCCCccchhcchhHHh--ccCCceeEEEcCCCCCCCC-c----ccccCcccccEEecCCCCCcccc-cc
Q 037494 142 SDMYLQSFLNHSSESDHLALIDCENFC--ENFKYLRVLNWGSAVLDQF-P----PGLENLFLLKYLQLNIPTLKCLP-LL 213 (394)
Q Consensus 142 ~~~~lr~L~l~~~~~~~~~~~~l~~~~--~~l~~L~~L~l~~~~~~~l-p----~~i~~l~~L~~L~l~~~~l~~lp-~~ 213 (394)
..++|+.|.+.++.... ..+..+ ..+++|++|++++|.+... + ..+..+++|++|++++|.+..+| ..
T Consensus 89 ~~~~L~~L~l~~n~l~~----~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 164 (310)
T 4glp_A 89 AYSRLKELTLEDLKITG----TMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQ 164 (310)
T ss_dssp HHSCCCEEEEESCCCBS----CCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTS
T ss_pred ccCceeEEEeeCCEecc----chhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHH
Confidence 34568888888877652 223222 6778888888888887632 2 33456778888888888877655 46
Q ss_pred ccCCCCCcEEEcc-cCCccc---cch--hhccCccCcEEEeeCCCCCCCCCCC----CCCCCcCceeCccccC--CCcch
Q 037494 214 ICTLLNLETLEMP-AGYIDH---SPE--GIWMMQKLMHLNFDSITLPAPPKNY----SSSLKNLIFISALHPS--SCTPD 281 (394)
Q Consensus 214 l~~l~~L~~L~l~-~~~l~~---lp~--~i~~l~~L~~L~l~~~~~~~~~p~~----l~~l~~L~~L~~~~~~--~~~~~ 281 (394)
++.+++|++|+++ | .+.. ++. .++.+++|++|+++ +|.+..++.. ++.+++|++|+++++. ...|.
T Consensus 165 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~Ls-~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~ 242 (310)
T 4glp_A 165 VRAFPALTSLDLSDN-PGLGERGLMAALCPHKFPAIQNLALR-NTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNP 242 (310)
T ss_dssp CCCCTTCCEEECCSC-TTCHHHHHHTTSCTTSSCCCCSCBCC-SSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS
T ss_pred hccCCCCCEEECCCC-CCccchhhhHHHhhhcCCCCCEEECC-CCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchh
Confidence 7778888888888 7 4432 332 23577888888888 7776555442 3566788888888777 22355
Q ss_pred hcCCC---CCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCCCCCCCCCCceEEEEecccCCC
Q 037494 282 ILSRL---PTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLIQLSLSNTELME 352 (394)
Q Consensus 282 ~l~~l---~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p~~~~~l~~L~~L~L~~~~l~~ 352 (394)
.++.+ ++|+.|++++|. ...+|..+. ++|+.|++++ +++..+ |.+.. +++|+.|++++|+++.
T Consensus 243 ~~~~~~~~~~L~~L~Ls~N~---l~~lp~~~~--~~L~~L~Ls~-N~l~~~-~~~~~-l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 243 SAPRCMWSSALNSLNLSFAG---LEQVPKGLP--AKLRVLDLSS-NRLNRA-PQPDE-LPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSSCCCCTTCCCEECCSSC---CCSCCSCCC--SCCSCEECCS-CCCCSC-CCTTS-CCCCSCEECSSTTTSC
T ss_pred hHHhccCcCcCCEEECCCCC---CCchhhhhc--CCCCEEECCC-CcCCCC-chhhh-CCCccEEECcCCCCCC
Confidence 55555 688999998885 336666553 7899999988 778877 65556 8999999999998753
No 92
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.64 E-value=3.7e-16 Score=154.44 Aligned_cols=177 Identities=18% Similarity=0.181 Sum_probs=141.4
Q ss_pred CceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeC
Q 037494 172 KYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDS 250 (394)
Q Consensus 172 ~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~ 250 (394)
.+|++|++++|.++.+|..+. ++|++|++++|.++.+| +.+++|++|+++ | .+..+|. +.. +|++|+++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls- 128 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVD- 128 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECC-
T ss_pred CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECC-
Confidence 389999999999998888764 78999999999999998 457899999999 8 8888887 655 89999999
Q ss_pred CCCCCCCCCCCCCCCcCceeCccccC-CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCcc
Q 037494 251 ITLPAPPKNYSSSLKNLIFISALHPS-SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRM 329 (394)
Q Consensus 251 ~~~~~~~p~~l~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L 329 (394)
+|.+..+|. .+++|+.|++.+|. ...+. .+++|+.|++++|. ...+|. +. ++|+.|+|++ +++..+
T Consensus 129 ~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~---L~~lp~-l~--~~L~~L~Ls~-N~L~~l 195 (571)
T 3cvr_A 129 NNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ---LTFLPE-LP--ESLEALDVST-NLLESL 195 (571)
T ss_dssp SSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC---CSCCCC-CC--TTCCEEECCS-SCCSSC
T ss_pred CCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC---CCCcch-hh--CCCCEEECcC-CCCCch
Confidence 998877887 68899999999888 44443 56889999999985 334665 54 8999999998 677777
Q ss_pred CCCCCCCCCCc-------eEEEEecccCCCCCcccccCCCCCCeEEEecccccC
Q 037494 330 VLSEYQFPPSL-------IQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFG 376 (394)
Q Consensus 330 ~p~~~~~l~~L-------~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 376 (394)
|.+ ..+| +.|+|++|+++. .+..+..+++|+.|++++|.+++
T Consensus 196 -p~~---~~~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 196 -PAV---PVRNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp -CCC---C--------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCH
T ss_pred -hhH---HHhhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCC
Confidence 642 2356 999999999864 34456679999999999888764
No 93
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.64 E-value=9.2e-16 Score=131.41 Aligned_cols=153 Identities=16% Similarity=0.150 Sum_probs=97.8
Q ss_pred cCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCC-CCCCCCCCCcCce
Q 037494 192 ENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAP-PKNYSSSLKNLIF 269 (394)
Q Consensus 192 ~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~-~p~~l~~l~~L~~ 269 (394)
+.+++|++|++++|.+..+| .+..+++|++|+++ | .+..++ .+..+++|++|+++ +|.+.. .|..+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~-~n~l~~~~~~~l-------- 108 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIM-GKDVTSDKIPNL-------- 108 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEE-CTTCBGGGSCCC--------
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeE-CCccCcccChhh--------
Confidence 55667777777777777776 67777777777777 6 555554 56667777777777 655332 33334
Q ss_pred eCccccCCCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCCCCCCCCCCceEEEEeccc
Q 037494 270 ISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLIQLSLSNTE 349 (394)
Q Consensus 270 L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p~~~~~l~~L~~L~L~~~~ 349 (394)
+.+++|+.|++++|. .....+..+..+++|+.|++++|..+..+ |.+.. +++|+.|++++|+
T Consensus 109 --------------~~l~~L~~L~Ls~n~--i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~~l~~-l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 109 --------------SGLTSLTLLDISHSA--HDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKT-LPELKSLNIQFDG 170 (197)
T ss_dssp --------------TTCTTCCEEECCSSB--CBGGGHHHHTTCSSCCEEECCSCTBCCCC-GGGGG-CSSCCEEECTTBC
T ss_pred --------------cCCCCCCEEEecCCc--cCcHhHHHHhhCCCCCEEEccCCCCcccc-HhhcC-CCCCCEEECCCCC
Confidence 445555555555554 44445555666666666666663335555 44455 7888888888888
Q ss_pred CCCCCcccccCCCCCCeEEEecccccC
Q 037494 350 LMEDPMPMLERLPRLQVMKLKRNSYFG 376 (394)
Q Consensus 350 l~~~~~~~l~~l~~L~~L~l~~n~~~~ 376 (394)
+.. ++.+..+++|++|++++|.+.+
T Consensus 171 i~~--~~~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 171 VHD--YRGIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCC--CTTGGGCSSCCEEEECBC----
T ss_pred CcC--hHHhccCCCCCEEEeeCcccCC
Confidence 754 3467888888999888887643
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.63 E-value=6.5e-17 Score=153.40 Aligned_cols=244 Identities=12% Similarity=0.021 Sum_probs=180.9
Q ss_pred CCceEEEEEEeCCcchhh-----c-cCCCCCccEEEEecCCCccchh------cchhHHhccCCceeEEEcCCCCCCC--
Q 037494 121 LATVKRCFILEDLIEFIS-----L-EQSDMYLQSFLNHSSESDHLAL------IDCENFCENFKYLRVLNWGSAVLDQ-- 186 (394)
Q Consensus 121 ~~~~r~L~l~~~~~~~~~-----~-~~~~~~lr~L~l~~~~~~~~~~------~~l~~~~~~l~~L~~L~l~~~~~~~-- 186 (394)
...+++|.+..+...... . ...+++|+.|.+.++....+.. ..+...+..+++|++|++++|.+..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 345777887755444321 1 2578999999999876543221 1122234789999999999999885
Q ss_pred ---CcccccCcccccEEecCCCCCcc-----ccccccCC---------CCCcEEEcc-cCCcc--ccc---hhhccCccC
Q 037494 187 ---FPPGLENLFLLKYLQLNIPTLKC-----LPLLICTL---------LNLETLEMP-AGYID--HSP---EGIWMMQKL 243 (394)
Q Consensus 187 ---lp~~i~~l~~L~~L~l~~~~l~~-----lp~~l~~l---------~~L~~L~l~-~~~l~--~lp---~~i~~l~~L 243 (394)
+|..+..+++|++|++++|.+.. ++..+..+ ++|++|+++ | .+. .+| ..+..+++|
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcHHHHHHHHHHHhCCCc
Confidence 67888999999999999999863 34444445 899999999 8 664 444 467789999
Q ss_pred cEEEeeCCCCCC------CCCCCCCCCCcCceeCccccC------CCcchhcCCCCCCCeEEEeecCCccccc----hhh
Q 037494 244 MHLNFDSITLPA------PPKNYSSSLKNLIFISALHPS------SCTPDILSRLPTVQTLRISGDLSHYHSG----VSK 307 (394)
Q Consensus 244 ~~L~l~~~~~~~------~~p~~l~~l~~L~~L~~~~~~------~~~~~~l~~l~~L~~L~l~~~~~~~~~~----~~~ 307 (394)
++|+++ +|.+. -.|..+..+++|++|++..|. ...+..+..+++|+.|++++|. .... ++.
T Consensus 190 ~~L~L~-~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~--i~~~~~~~l~~ 266 (386)
T 2ca6_A 190 HTVKMV-QNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL--LSARGAAAVVD 266 (386)
T ss_dssp CEEECC-SSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC--CCHHHHHHHHH
T ss_pred CEEECc-CCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC--CchhhHHHHHH
Confidence 999999 98765 234478899999999999887 2245678899999999999997 3332 566
Q ss_pred hhcC--CCCCcEEEecCCCCCCc-----cCC-CC-CCCCCCceEEEEecccCCCCCc--cccc-CCCCCCeEEEec
Q 037494 308 SLCE--LHKLECLKLVNGSKLSR-----MVL-SE-YQFPPSLIQLSLSNTELMEDPM--PMLE-RLPRLQVMKLKR 371 (394)
Q Consensus 308 ~l~~--~~~L~~L~l~~~~~L~~-----L~p-~~-~~~l~~L~~L~L~~~~l~~~~~--~~l~-~l~~L~~L~l~~ 371 (394)
.+.. +++|+.|+|++ +.+.. + | .+ .+ +++|+.|++++|++..... ..+. .++.++.+.+..
T Consensus 267 ~l~~~~~~~L~~L~L~~-n~i~~~g~~~l-~~~l~~~-l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 267 AFSKLENIGLQTLRLQY-NEIELDAVRTL-KTVIDEK-MPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp HHHTCSSCCCCEEECCS-SCCBHHHHHHH-HHHHHHH-CTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred HHhhccCCCeEEEECcC-CcCCHHHHHHH-HHHHHhc-CCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhh
Confidence 7744 89999999998 55665 6 6 55 55 7999999999999977662 3333 466666666643
No 95
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.63 E-value=5.1e-16 Score=139.26 Aligned_cols=171 Identities=17% Similarity=0.140 Sum_probs=145.3
Q ss_pred CcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeC
Q 037494 193 NLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFIS 271 (394)
Q Consensus 193 ~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~ 271 (394)
.+.++..++++++.++.++ .+..+++|++|+++ | .+..+| .+..+++|++|+++ +|.+..+|+ ++.+++|+.|+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~-~N~i~~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLS-HNQISDLSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECC-SSCCCCCGG-GTTCSSCCEEE
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECC-CCccCCChh-hccCCCCCEEE
Confidence 5677888899999999888 68889999999999 8 899998 78999999999999 999888887 99999999999
Q ss_pred ccccCCCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCCCCCCCCCCceEEEEecccCC
Q 037494 272 ALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLIQLSLSNTELM 351 (394)
Q Consensus 272 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p~~~~~l~~L~~L~L~~~~l~ 351 (394)
+.++.....+.+.. ++|+.|++++|. . ..++ .+..+++|+.|++++ +.+..+ |.+.. +++|+.|++++|++.
T Consensus 92 L~~N~l~~l~~~~~-~~L~~L~L~~N~--l-~~~~-~l~~l~~L~~L~Ls~-N~i~~~-~~l~~-l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 92 VNRNRLKNLNGIPS-ACLSRLFLDNNE--L-RDTD-SLIHLKNLEILSIRN-NKLKSI-VMLGF-LSKLEVLDLHGNEIT 163 (263)
T ss_dssp CCSSCCSCCTTCCC-SSCCEEECCSSC--C-SBSG-GGTTCTTCCEEECTT-SCCCBC-GGGGG-CTTCCEEECTTSCCC
T ss_pred CCCCccCCcCcccc-CcccEEEccCCc--c-CCCh-hhcCcccccEEECCC-CcCCCC-hHHcc-CCCCCEEECCCCcCc
Confidence 99998333334444 899999999996 3 3333 588999999999998 678777 66666 899999999999986
Q ss_pred CCCcccccCCCCCCeEEEecccccCce
Q 037494 352 EDPMPMLERLPRLQVMKLKRNSYFGRK 378 (394)
Q Consensus 352 ~~~~~~l~~l~~L~~L~l~~n~~~~~~ 378 (394)
.. ..+..+++|+.|++++|.+....
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred ch--HHhccCCCCCEEeCCCCcccCCc
Confidence 54 77899999999999999877654
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.62 E-value=1.4e-15 Score=130.30 Aligned_cols=150 Identities=16% Similarity=0.114 Sum_probs=104.7
Q ss_pred ccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccc-cchhhccCccCcEE
Q 037494 169 ENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDH-SPEGIWMMQKLMHL 246 (394)
Q Consensus 169 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~-lp~~i~~l~~L~~L 246 (394)
..+++|+.|+++++.+..+| .+..+++|++|++++|.+..++ .++.+++|++|+++ | .+.. .|..++.+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECT-TCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECC-ccCcccChhhcCCCCCCEE
Confidence 56788999999999999888 6999999999999999887775 78999999999999 8 6664 67789999999999
Q ss_pred EeeCCCCCCC-CCCCCCCCCcCceeCccccCCCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCC
Q 037494 247 NFDSITLPAP-PKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSK 325 (394)
Q Consensus 247 ~l~~~~~~~~-~p~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 325 (394)
+++ +|.+.. .|..++.+++|++|++.+|. ....++ .+..+++|+.|++++ +.
T Consensus 118 ~Ls-~n~i~~~~~~~l~~l~~L~~L~L~~n~------------------------~i~~~~-~l~~l~~L~~L~l~~-n~ 170 (197)
T 4ezg_A 118 DIS-HSAHDDSILTKINTLPKVNSIDLSYNG------------------------AITDIM-PLKTLPELKSLNIQF-DG 170 (197)
T ss_dssp ECC-SSBCBGGGHHHHTTCSSCCEEECCSCT------------------------BCCCCG-GGGGCSSCCEEECTT-BC
T ss_pred Eec-CCccCcHhHHHHhhCCCCCEEEccCCC------------------------CccccH-hhcCCCCCCEEECCC-CC
Confidence 999 876443 33344455555555554443 122233 344555555555554 33
Q ss_pred CCccCCCCCCCCCCceEEEEecccC
Q 037494 326 LSRMVLSEYQFPPSLIQLSLSNTEL 350 (394)
Q Consensus 326 L~~L~p~~~~~l~~L~~L~L~~~~l 350 (394)
+..+ +.+.. +++|+.|++++|++
T Consensus 171 i~~~-~~l~~-l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 171 VHDY-RGIED-FPKLNQLYAFSQTI 193 (197)
T ss_dssp CCCC-TTGGG-CSSCCEEEECBC--
T ss_pred CcCh-HHhcc-CCCCCEEEeeCccc
Confidence 4443 33334 56666666666664
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.61 E-value=1.1e-16 Score=150.38 Aligned_cols=233 Identities=10% Similarity=0.038 Sum_probs=160.6
Q ss_pred CCCCCccEEEEecCCCccchhcchhHHhccCC-ceeEEEcCCCCCCCC-cccccCc-----ccccEEecCCCCCcccccc
Q 037494 141 QSDMYLQSFLNHSSESDHLALIDCENFCENFK-YLRVLNWGSAVLDQF-PPGLENL-----FLLKYLQLNIPTLKCLPLL 213 (394)
Q Consensus 141 ~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~-~L~~L~l~~~~~~~l-p~~i~~l-----~~L~~L~l~~~~l~~lp~~ 213 (394)
...++|+.|.+.++.........+...+..++ +|++|++++|.+... +..+..+ ++|++|++++|.+...+..
T Consensus 19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence 34455999999998876322222324448888 899999999998854 4556654 8999999999998865433
Q ss_pred -----ccCC-CCCcEEEcc-cCCccccch-h----hcc-CccCcEEEeeCCCCCCC-----CCCCCCCCC-cCceeCccc
Q 037494 214 -----ICTL-LNLETLEMP-AGYIDHSPE-G----IWM-MQKLMHLNFDSITLPAP-----PKNYSSSLK-NLIFISALH 274 (394)
Q Consensus 214 -----l~~l-~~L~~L~l~-~~~l~~lp~-~----i~~-l~~L~~L~l~~~~~~~~-----~p~~l~~l~-~L~~L~~~~ 274 (394)
+..+ ++|++|+++ | .+...+. . +.. .++|++|+++ +|.+.. ++..+..++ +|++|++.+
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls-~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 176 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLR-GNDLGIKSSDELIQILAAIPANVNSLNLRG 176 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECT-TSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred HHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEcc-CCcCCHHHHHHHHHHHhcCCccccEeeecC
Confidence 4455 799999999 8 7776654 2 333 3689999999 887542 223344554 899999998
Q ss_pred cC--CCcch----hcCCC-CCCCeEEEeecC--CccccchhhhhcCC-CCCcEEEecCCCCCCccC----C-CCCCCCCC
Q 037494 275 PS--SCTPD----ILSRL-PTVQTLRISGDL--SHYHSGVSKSLCEL-HKLECLKLVNGSKLSRMV----L-SEYQFPPS 339 (394)
Q Consensus 275 ~~--~~~~~----~l~~l-~~L~~L~l~~~~--~~~~~~~~~~l~~~-~~L~~L~l~~~~~L~~L~----p-~~~~~l~~ 339 (394)
|. ...+. .+... ++|+.|++++|. ......++..+... ++|+.|++++ +.+.... + .+.. +++
T Consensus 177 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~l~~~~~~~l~~~~~~-l~~ 254 (362)
T 3goz_A 177 NNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCL-NCLHGPSLENLKLLKDS-LKH 254 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCS-SCCCCCCHHHHHHTTTT-TTT
T ss_pred CCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcC-CCCCcHHHHHHHHHHhc-CCC
Confidence 87 22322 34455 589999999986 11122366666664 5899999998 4454431 2 4455 789
Q ss_pred ceEEEEecccCCCCCcc-------cccCCCCCCeEEEecccccCc
Q 037494 340 LIQLSLSNTELMEDPMP-------MLERLPRLQVMKLKRNSYFGR 377 (394)
Q Consensus 340 L~~L~L~~~~l~~~~~~-------~l~~l~~L~~L~l~~n~~~~~ 377 (394)
|+.|++++|.+...... .+..+++|+.|++++|.+.+.
T Consensus 255 L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 255 LQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred ccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 99999999985433322 356778889999988887654
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.61 E-value=3.3e-15 Score=128.98 Aligned_cols=175 Identities=18% Similarity=0.160 Sum_probs=106.9
Q ss_pred eEEEcCCCCCCCCcccccCcccccEEecCCCCCcccccc-ccCCCCCcEEEcc-cCCccccchh-hccCccCcEEEeeCC
Q 037494 175 RVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLL-ICTLLNLETLEMP-AGYIDHSPEG-IWMMQKLMHLNFDSI 251 (394)
Q Consensus 175 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~-~~~l~~lp~~-i~~l~~L~~L~l~~~ 251 (394)
+.++.+++++..+|..+ ..+|++|++++|.++.+|.. ++.+++|++|+++ | .+..+|.. +..+++|++|+++ +
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls-~ 85 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLS-T 85 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECC-S
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECC-C
Confidence 34556666666666444 34667777777766666544 4566777777777 6 66666553 4566777777777 6
Q ss_pred CCCCCCCCC-CCCCCcCceeCccccC-CCcc-hhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCc
Q 037494 252 TLPAPPKNY-SSSLKNLIFISALHPS-SCTP-DILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSR 328 (394)
Q Consensus 252 ~~~~~~p~~-l~~l~~L~~L~~~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~ 328 (394)
|.+..+|+. ++.+++|++|++.++. ...+ ..++.+++|+.|++++|. .....+..+..+++|+.|+++++
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~--l~~~~~~~~~~l~~L~~L~l~~N----- 158 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ--LKSVPDGVFDRLTSLQYIWLHDN----- 158 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CSCCCTTTTTTCTTCCEEECCSC-----
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc--cceeCHHHhccCCCccEEEecCC-----
Confidence 665555544 4666666666666665 2222 235666777777777764 33222334566777777777652
Q ss_pred cCCCCCCCCCCceEEEEecccCCCCCcccccCCCC
Q 037494 329 MVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPR 363 (394)
Q Consensus 329 L~p~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~ 363 (394)
|+.+. +++|+.|+++.|++....++.++.++.
T Consensus 159 --~~~~~-~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 159 --PWDCT-CPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp --CBCCC-TTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred --CeecC-CCCHHHHHHHHHhCCceeeccCccccC
Confidence 13344 667777777777776666666665543
No 99
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.61 E-value=3.7e-17 Score=158.64 Aligned_cols=85 Identities=19% Similarity=0.049 Sum_probs=38.3
Q ss_pred CCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCC-cccc-cCcc----cccEEecCCCCCc-----cc
Q 037494 142 SDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQF-PPGL-ENLF----LLKYLQLNIPTLK-----CL 210 (394)
Q Consensus 142 ~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l-p~~i-~~l~----~L~~L~l~~~~l~-----~l 210 (394)
.++++++|.+.++.........++..+..+++|++|++++|.+... +..+ ..+. +|++|++++|.+. .+
T Consensus 26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l 105 (461)
T 1z7x_W 26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 105 (461)
T ss_dssp HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence 4445555555555543211112233335555555555555554321 1111 1222 3555555555544 23
Q ss_pred cccccCCCCCcEEEcc
Q 037494 211 PLLICTLLNLETLEMP 226 (394)
Q Consensus 211 p~~l~~l~~L~~L~l~ 226 (394)
|..+..+++|++|+++
T Consensus 106 ~~~l~~~~~L~~L~Ls 121 (461)
T 1z7x_W 106 SSTLRTLPTLQELHLS 121 (461)
T ss_dssp HHHTTSCTTCCEEECC
T ss_pred HHHHccCCceeEEECC
Confidence 4445555555555555
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.60 E-value=4.7e-15 Score=138.64 Aligned_cols=209 Identities=12% Similarity=0.072 Sum_probs=152.4
Q ss_pred cEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcc-cccCcccccEEecCCCCCc-cccc-cccCCCCCcEE
Q 037494 147 QSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPP-GLENLFLLKYLQLNIPTLK-CLPL-LICTLLNLETL 223 (394)
Q Consensus 147 r~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~l~-~lp~-~l~~l~~L~~L 223 (394)
+++...++... .+|.-+ .+++++|++++|.++.+|+ ++.++++|++|+|++|.+. .+|. .+.++++++.+
T Consensus 12 ~~v~C~~~~Lt-----~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~ 84 (350)
T 4ay9_X 12 RVFLCQESKVT-----EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI 84 (350)
T ss_dssp TEEEEESTTCC-----SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEE
T ss_pred CEEEecCCCCC-----ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhh
Confidence 45666655554 333211 3679999999999999985 6899999999999999874 5664 46788888875
Q ss_pred Ecc-cCCccccch-hhccCccCcEEEeeCCCCCCCCCCC-CCCCCcCceeCccccC--CCcc-hhcCCC-CCCCeEEEee
Q 037494 224 EMP-AGYIDHSPE-GIWMMQKLMHLNFDSITLPAPPKNY-SSSLKNLIFISALHPS--SCTP-DILSRL-PTVQTLRISG 296 (394)
Q Consensus 224 ~l~-~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~~~~~~--~~~~-~~l~~l-~~L~~L~l~~ 296 (394)
... ++.+..+|+ .+..+++|++|+++ +|.+..+|+. .....++..|.+..+. ...+ ..+..+ ..++.|++++
T Consensus 85 l~~~~N~l~~l~~~~f~~l~~L~~L~l~-~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~ 163 (350)
T 4ay9_X 85 RIEKANNLLYINPEAFQNLPNLQYLLIS-NTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163 (350)
T ss_dssp EEEEETTCCEECTTSBCCCTTCCEEEEE-EECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred hcccCCcccccCchhhhhcccccccccc-ccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence 554 438888864 57899999999999 9987777753 4455667777776654 2222 234444 3688899999
Q ss_pred cCCccccchhhhhcCCCCCcEEEecCCCCCCccCC--CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEec
Q 037494 297 DLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL--SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKR 371 (394)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p--~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~ 371 (394)
|. ...++..+....+|+.|.+.+++.++.+ | .+.. +++|+.|++++|+++..+... +.+|+.|.+.+
T Consensus 164 N~---i~~i~~~~f~~~~L~~l~l~~~n~l~~i-~~~~f~~-l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~ 232 (350)
T 4ay9_X 164 NG---IQEIHNSAFNGTQLDELNLSDNNNLEEL-PNDVFHG-ASGPVILDISRTRIHSLPSYG---LENLKKLRARS 232 (350)
T ss_dssp SC---CCEECTTSSTTEEEEEEECTTCTTCCCC-CTTTTTT-EECCSEEECTTSCCCCCCSSS---CTTCCEEECTT
T ss_pred cc---ccCCChhhccccchhHHhhccCCcccCC-CHHHhcc-CcccchhhcCCCCcCccChhh---hccchHhhhcc
Confidence 84 4566666556678999999877889999 6 6788 999999999999987655433 55666666544
No 101
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.60 E-value=2.8e-16 Score=147.72 Aligned_cols=227 Identities=11% Similarity=0.027 Sum_probs=124.2
Q ss_pred CceEEEEEEeCCcchhhc------cCCCC-CccEEEEecCCCccchhcchhHHhccC-CceeEEEcCCCCCCCCc-cc--
Q 037494 122 ATVKRCFILEDLIEFISL------EQSDM-YLQSFLNHSSESDHLALIDCENFCENF-KYLRVLNWGSAVLDQFP-PG-- 190 (394)
Q Consensus 122 ~~~r~L~l~~~~~~~~~~------~~~~~-~lr~L~l~~~~~~~~~~~~l~~~~~~l-~~L~~L~l~~~~~~~lp-~~-- 190 (394)
..+++|.+..+.....+. ...++ +|+.|.+.++.........+...+... ++|++|++++|.+...+ ..
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 346667766555444332 13455 677777777766521111122222232 77777777777766433 32
Q ss_pred --ccCc-ccccEEecCCCCCcccccc-----ccC-CCCCcEEEcc-cCCcc-----ccchhhccCc-cCcEEEeeCCCCC
Q 037494 191 --LENL-FLLKYLQLNIPTLKCLPLL-----ICT-LLNLETLEMP-AGYID-----HSPEGIWMMQ-KLMHLNFDSITLP 254 (394)
Q Consensus 191 --i~~l-~~L~~L~l~~~~l~~lp~~-----l~~-l~~L~~L~l~-~~~l~-----~lp~~i~~l~-~L~~L~l~~~~~~ 254 (394)
+..+ ++|++|++++|.+...+.. +.. ..+|++|+++ | .+. .++..+..++ +|++|+++ +|.+
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls-~n~l 179 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLR-GNNL 179 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECT-TSCG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeeec-CCCC
Confidence 3333 6777777777777655421 233 2477777777 6 555 3444455555 77777777 7664
Q ss_pred CCCCC-----CCCCC-CcCceeCccccC-CC-----cchhcCCC-CCCCeEEEeecCC--ccccchhhhhcCCCCCcEEE
Q 037494 255 APPKN-----YSSSL-KNLIFISALHPS-SC-----TPDILSRL-PTVQTLRISGDLS--HYHSGVSKSLCELHKLECLK 319 (394)
Q Consensus 255 ~~~p~-----~l~~l-~~L~~L~~~~~~-~~-----~~~~l~~l-~~L~~L~l~~~~~--~~~~~~~~~l~~~~~L~~L~ 319 (394)
..... .+... ++|++|++.+|. .. .+..+..+ ++|+.|++++|.- .....+...+..+++|+.|+
T Consensus 180 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~ 259 (362)
T 3goz_A 180 ASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVY 259 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEE
T ss_pred chhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEE
Confidence 43322 12333 477777777766 22 33344442 4677777777751 11122334455667777777
Q ss_pred ecCCC-------CCCccCC-CCCCCCCCceEEEEecccCCC
Q 037494 320 LVNGS-------KLSRMVL-SEYQFPPSLIQLSLSNTELME 352 (394)
Q Consensus 320 l~~~~-------~L~~L~p-~~~~~l~~L~~L~L~~~~l~~ 352 (394)
++++. .+..+ + .+.. +++|+.|++++|++..
T Consensus 260 L~~n~l~~i~~~~~~~l-~~~~~~-l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 260 LDYDIVKNMSKEQCKAL-GAAFPN-IQKIILVDKNGKEIHP 298 (362)
T ss_dssp EEHHHHTTCCHHHHHHH-HTTSTT-CCEEEEECTTSCBCCG
T ss_pred eccCCccccCHHHHHHH-HHHhcc-CCceEEEecCCCcCCC
Confidence 77621 12222 3 4455 6677777777777643
No 102
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.59 E-value=7.3e-15 Score=137.35 Aligned_cols=227 Identities=13% Similarity=0.020 Sum_probs=135.5
Q ss_pred EEeCCcchhhccCCCCCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCC-CCc-ccccCcccccE-EecCC
Q 037494 129 ILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLD-QFP-PGLENLFLLKY-LQLNI 204 (394)
Q Consensus 129 l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~-~lp-~~i~~l~~L~~-L~l~~ 204 (394)
...+....+|... .++++.|.+.++.+. .+ ++.|.++++|++|++++|.+. .+| ..+.++++++. +.+.+
T Consensus 16 C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~-----~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 16 CQESKVTEIPSDL-PRNAIELRFVLTKLR-----VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EESTTCCSCCTTC-CTTCSEEEEESCCCS-----EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred ecCCCCCccCcCc-CCCCCEEEccCCcCC-----CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 3333444454432 356777777777665 34 233477777777777777754 344 34566766654 44455
Q ss_pred CCCcccc-ccccCCCCCcEEEcc-cCCccccch-hhccCccCcEEEeeCCC-CCCCCCCC-CCCC-CcCceeCccccC-C
Q 037494 205 PTLKCLP-LLICTLLNLETLEMP-AGYIDHSPE-GIWMMQKLMHLNFDSIT-LPAPPKNY-SSSL-KNLIFISALHPS-S 277 (394)
Q Consensus 205 ~~l~~lp-~~l~~l~~L~~L~l~-~~~l~~lp~-~i~~l~~L~~L~l~~~~-~~~~~p~~-l~~l-~~L~~L~~~~~~-~ 277 (394)
|.+..+| ..+..+++|++|+++ | .+..+|. .+....++..+++. ++ .+..+|.. +..+ ..++.|.+.++. .
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~-~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQ-DNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEE-SCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred CcccccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhc-cccccccccccchhhcchhhhhhcccccccc
Confidence 6777664 345677777777777 6 6666654 34455566777776 43 35555543 3443 356677777666 4
Q ss_pred CcchhcCCCCCCCeEEEeecCCccccchhh-hhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCc
Q 037494 278 CTPDILSRLPTVQTLRISGDLSHYHSGVSK-SLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPM 355 (394)
Q Consensus 278 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~ 355 (394)
..+.......+|+.|.+.++. ....+|. .+..+++|+.|++++ ++++.+ | .. +.+|+.|.+.++. ....+
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n--~l~~i~~~~f~~l~~L~~LdLs~-N~l~~l-p~~~---~~~L~~L~~l~~~-~l~~l 239 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNN--NLEELPNDVFHGASGPVILDISR-TRIHSL-PSYG---LENLKKLRARSTY-NLKKL 239 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCT--TCCCCCTTTTTTEECCSEEECTT-SCCCCC-CSSS---CTTCCEEECTTCT-TCCCC
T ss_pred CCChhhccccchhHHhhccCC--cccCCCHHHhccCcccchhhcCC-CCcCcc-Chhh---hccchHhhhccCC-CcCcC
Confidence 444455555567777776543 4555553 456677777777776 567776 5 32 4456666655554 23344
Q ss_pred ccccCCCCCCeEEEec
Q 037494 356 PMLERLPRLQVMKLKR 371 (394)
Q Consensus 356 ~~l~~l~~L~~L~l~~ 371 (394)
|.+..+++|+.+++.+
T Consensus 240 P~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 240 PTLEKLVALMEASLTY 255 (350)
T ss_dssp CCTTTCCSCCEEECSC
T ss_pred CCchhCcChhhCcCCC
Confidence 5667777777777743
No 103
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.59 E-value=3.9e-17 Score=158.48 Aligned_cols=230 Identities=13% Similarity=0.011 Sum_probs=131.6
Q ss_pred CCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCC-ccccc-----CcccccEEecCCCCCcc-----cc
Q 037494 143 DMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQF-PPGLE-----NLFLLKYLQLNIPTLKC-----LP 211 (394)
Q Consensus 143 ~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l-p~~i~-----~l~~L~~L~l~~~~l~~-----lp 211 (394)
.++|+.|.+.++.........++..+..+++|++|++++|.+... +..+. ..++|++|++++|.+.. +|
T Consensus 141 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 220 (461)
T 1z7x_W 141 QCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC 220 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHH
T ss_pred CCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHH
Confidence 345666666666554211122333345666777777776665421 12221 24467777777766654 45
Q ss_pred ccccCCCCCcEEEcc-cCCcccc-----chh-hccCccCcEEEeeCCCCCCC-----CCCCCCCCCcCceeCccccC--C
Q 037494 212 LLICTLLNLETLEMP-AGYIDHS-----PEG-IWMMQKLMHLNFDSITLPAP-----PKNYSSSLKNLIFISALHPS--S 277 (394)
Q Consensus 212 ~~l~~l~~L~~L~l~-~~~l~~l-----p~~-i~~l~~L~~L~l~~~~~~~~-----~p~~l~~l~~L~~L~~~~~~--~ 277 (394)
..+..+++|++|+++ | .+... ++. ...+++|++|+++ +|.+.. ++..+..+++|++|++.++. .
T Consensus 221 ~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~-~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 298 (461)
T 1z7x_W 221 GIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIW-ECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 298 (461)
T ss_dssp HHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECT-TSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHH
T ss_pred HHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECc-CCCCCHHHHHHHHHHHhhCCCcceEECCCCCCch
Confidence 556666777777777 6 44432 122 2246677777777 666444 44445556777777777665 1
Q ss_pred C----cchhcC-CCCCCCeEEEeecCCcccc----chhhhhcCCCCCcEEEecCCCCCCccC----C-CCCCCCCCceEE
Q 037494 278 C----TPDILS-RLPTVQTLRISGDLSHYHS----GVSKSLCELHKLECLKLVNGSKLSRMV----L-SEYQFPPSLIQL 343 (394)
Q Consensus 278 ~----~~~~l~-~l~~L~~L~l~~~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~L~~L~----p-~~~~~l~~L~~L 343 (394)
. ....+. ..++|+.|++++|. ... .++..+..+++|+.|+++++ .+.... . .+....++|+.|
T Consensus 299 ~~~~~l~~~l~~~~~~L~~L~L~~n~--l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L 375 (461)
T 1z7x_W 299 EGARLLCETLLEPGCQLESLWVKSCS--FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVL 375 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSC--CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred HHHHHHHHHhccCCccceeeEcCCCC--CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEE
Confidence 1 111222 22577777777775 222 35666667778888888763 333221 1 111114688888
Q ss_pred EEecccCCC----CCcccccCCCCCCeEEEecccccCc
Q 037494 344 SLSNTELME----DPMPMLERLPRLQVMKLKRNSYFGR 377 (394)
Q Consensus 344 ~L~~~~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~ 377 (394)
++++|+++. ..+..+..+++|++|++++|.+.+.
T Consensus 376 ~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 376 WLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp ECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred ECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 888888753 2344566788899999988877654
No 104
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.56 E-value=1.6e-17 Score=164.79 Aligned_cols=176 Identities=19% Similarity=0.164 Sum_probs=90.9
Q ss_pred ccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCC--------------CccccccccCCCCCcEEE-cc-cCCccc
Q 037494 169 ENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPT--------------LKCLPLLICTLLNLETLE-MP-AGYIDH 232 (394)
Q Consensus 169 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~--------------l~~lp~~l~~l~~L~~L~-l~-~~~l~~ 232 (394)
...++|+.|++++|.++.+|+.++++++|+.|+++++. ....|..++.+.+|+.|+ ++ + .+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-ccch
Confidence 44566667777777777777777777777777765542 123344455556666665 33 3 3332
Q ss_pred cch------hhcc--CccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccC-CCcchhcCCCCCCCeEEEeecCCcccc
Q 037494 233 SPE------GIWM--MQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPS-SCTPDILSRLPTVQTLRISGDLSHYHS 303 (394)
Q Consensus 233 lp~------~i~~--l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~ 303 (394)
++. .+.. ...|+.|+++ +|.+..+|. ++.+++|+.|++.++. ...|..++.+++|+.|++++|
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls-~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N------ 496 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLA-HKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN------ 496 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECT-TSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS------
T ss_pred hhhhhhhcccccccCccCceEEEec-CCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC------
Confidence 221 1111 1235566666 555555543 5555555555555544 334444444455555555444
Q ss_pred chhhhhcCCCCCcEEEecCCCCCCccCCCCCCCCCCceEEEEecccCCCCC-cccccCCCCCCeEEEecccccC
Q 037494 304 GVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLIQLSLSNTELMEDP-MPMLERLPRLQVMKLKRNSYFG 376 (394)
Q Consensus 304 ~~~~~l~~~~~L~~L~l~~~~~L~~L~p~~~~~l~~L~~L~L~~~~l~~~~-~~~l~~l~~L~~L~l~~n~~~~ 376 (394)
.+..+ |.++. +++|+.|+|++|+++... +..++.+++|+.|++++|.+++
T Consensus 497 ---------------------~l~~l-p~l~~-l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 497 ---------------------ALENV-DGVAN-LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp ---------------------CCCCC-GGGTT-CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred ---------------------CCCCC-cccCC-CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 34444 33334 455555555555554443 4445555555555555555444
No 105
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.55 E-value=2.8e-16 Score=157.30 Aligned_cols=243 Identities=9% Similarity=0.031 Sum_probs=133.2
Q ss_pred CCceEEEEEEeCCcchhhc--cCC-CC-CccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCC-----Ccccc
Q 037494 121 LATVKRCFILEDLIEFISL--EQS-DM-YLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQ-----FPPGL 191 (394)
Q Consensus 121 ~~~~r~L~l~~~~~~~~~~--~~~-~~-~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~-----lp~~i 191 (394)
...++.|.+..+...+... ... ++ +|++|.+.++... ....+..+...+++|++|++++|.+.. ++...
T Consensus 111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~--~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF--TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEE--EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCc--CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 3456777777443322111 111 22 3777777776532 122344554677888888888777542 23344
Q ss_pred cCcccccEEecCCCCCc-----cccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCC-C---CCCCCCC
Q 037494 192 ENLFLLKYLQLNIPTLK-----CLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITL-P---APPKNYS 261 (394)
Q Consensus 192 ~~l~~L~~L~l~~~~l~-----~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~-~---~~~p~~l 261 (394)
..+++|++|++++|.+. .++..+.++++|++|+++ | .+..+|..+..+++|++|+++ .+. . ...+..+
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~-~~~~~~~~~~~~~~l 266 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGFFKAAANLEEFCGG-SLNEDIGMPEKYMNL 266 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHHHHHCTTCCEEEEC-BCCCCTTCTTSSSCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHHHhhhhHHHhhccc-ccccccchHHHHHHh
Confidence 56677788888777664 344445667778888887 7 666677777777777777776 432 1 1222233
Q ss_pred CCCCcCceeCccccC-CCcchh-------------------------cCCCCCCCeEEEeecCCccccchhhhhcCCCCC
Q 037494 262 SSLKNLIFISALHPS-SCTPDI-------------------------LSRLPTVQTLRISGDLSHYHSGVSKSLCELHKL 315 (394)
Q Consensus 262 ~~l~~L~~L~~~~~~-~~~~~~-------------------------l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L 315 (394)
+.+++|+.|.+..+. ...+.. +..+++|+.|++.++- ....++.....+++|
T Consensus 267 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~--~~~~l~~~~~~~~~L 344 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVI--GDRGLEVLAQYCKQL 344 (592)
T ss_dssp CCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGG--HHHHHHHHHHHCTTC
T ss_pred hccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCcc--CHHHHHHHHHhCCCC
Confidence 444444444443332 223333 3455555555555321 222233333445556
Q ss_pred cEEEecC----------CCCCCccC-C-CCCCCCCCceEEEEecccCCCCCcccccC-CCCCCeEEEe
Q 037494 316 ECLKLVN----------GSKLSRMV-L-SEYQFPPSLIQLSLSNTELMEDPMPMLER-LPRLQVMKLK 370 (394)
Q Consensus 316 ~~L~l~~----------~~~L~~L~-p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~-l~~L~~L~l~ 370 (394)
+.|++++ |+.+..-. + .... +++|++|+++.+.++...+..++. +++|+.|+++
T Consensus 345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~-~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQG-CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp CEEEEECCCCSSTTSSTTCCCCHHHHHHHHHH-CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred CEEEeecCccccccccccCccCHHHHHHHHhh-CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEe
Confidence 6666652 23332210 1 1223 678888888777765555555554 7888888886
No 106
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.55 E-value=1.1e-15 Score=151.37 Aligned_cols=96 Identities=22% Similarity=0.277 Sum_probs=81.8
Q ss_pred CchhHHHHHHhcccCCCchhhHHHhc-----------cccccCCCceechHHHHHHHHhc--CCCC-----CChHHHHHH
Q 037494 5 GEAILTVWRQIYSVMELPFHLKVYCI-----------YLCVFCPSIEISTRQLCQLWIAE--GFIP-----YNSEETAEY 66 (394)
Q Consensus 5 ~~~i~~~lk~~~SY~~L~~~~k~cfl-----------~~~~Fp~~~~i~~~~Li~~wia~--gfi~-----~~~~~~~~~ 66 (394)
.++|.++++ +||++||.++|.||+ |||+||+|+.|+ |++|+|+ ||+. ...+++++
T Consensus 360 ~~~i~~~l~--~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~- 432 (549)
T 2a5y_B 360 LVGVECITP--YSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD- 432 (549)
T ss_dssp SSTTCCCSS--SSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-
T ss_pred HHHHHHHHh--cccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-
Confidence 456788888 999999999999999 999999999998 8999999 9996 34788888
Q ss_pred HHHHHHhcCceeeeecCCCCcEeEEEcCHHHHHHHHHHhcccCc
Q 037494 67 YLKELIHRGFIQVSKRRAGGTIKACYVPSLVYYSLLLVAEKTRF 110 (394)
Q Consensus 67 ~l~~L~~~~ll~~~~~~~~g~~~~~~mhdli~~l~~~~~~~~~~ 110 (394)
||++|++++|++....+ ...+|+|||++|++|+.+++++++
T Consensus 433 ~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 433 RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 99999999999987653 336799999999999999887653
No 107
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.55 E-value=3.6e-16 Score=156.48 Aligned_cols=247 Identities=13% Similarity=0.045 Sum_probs=141.0
Q ss_pred CCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCC-----CCcccccCcccccEEecCCCCCccccc----
Q 037494 142 SDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLD-----QFPPGLENLFLLKYLQLNIPTLKCLPL---- 212 (394)
Q Consensus 142 ~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~~~l~~lp~---- 212 (394)
.+++|+.|.+.++.........++.++..+++|++|+++++.++ .++..+.++++|+.|++++|.+..+|.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~ 241 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA 241 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence 45666666666654321000002333344555555555555543 122233344555555555554444443
Q ss_pred -----------------------cccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCC--CCCCCCCCCc
Q 037494 213 -----------------------LICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAP--PKNYSSSLKN 266 (394)
Q Consensus 213 -----------------------~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~--~p~~l~~l~~ 266 (394)
.+..+.+|+.|+++ + ....+|..+..+++|++|+++ +|.... ++..++.+++
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls-~~~l~~~~~~~~~~~~~~ 319 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLL-YALLETEDHCTLIQKCPN 319 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEET-TCCCCHHHHHHHHTTCTT
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecC-CCcCCHHHHHHHHHhCcC
Confidence 44455556666555 4 455667777788899999999 876321 1122578889
Q ss_pred CceeCccccC--CCcchhcCCCCCCCeEEEee----------cCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CC
Q 037494 267 LIFISALHPS--SCTPDILSRLPTVQTLRISG----------DLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SE 333 (394)
Q Consensus 267 L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~----------~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~ 333 (394)
|++|.+..+- .........+++|+.|++++ +.......+......+++|+.|++.+ +++..-.+ .+
T Consensus 320 L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~-~~l~~~~~~~l 398 (592)
T 3ogk_B 320 LEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV-SDITNESLESI 398 (592)
T ss_dssp CCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE-SCCCHHHHHHH
T ss_pred CCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeec-CCccHHHHHHH
Confidence 9999887433 22333345678999999994 43112223444456689999999954 44433211 22
Q ss_pred -CCCCCCceEEEEec----ccCCCCCc-----ccccCCCCCCeEEEeccc--ccCceeEEeCCCCCcCCccc
Q 037494 334 -YQFPPSLIQLSLSN----TELMEDPM-----PMLERLPRLQVMKLKRNS--YFGRKLACVGSGGFPELQVL 393 (394)
Q Consensus 334 -~~~l~~L~~L~L~~----~~l~~~~~-----~~l~~l~~L~~L~l~~n~--~~~~~~~~~~~~~fp~L~~L 393 (394)
.. +++|+.|++++ +.++..+. ..+.++++|++|+++.+. +++..+... ...+|+|+.|
T Consensus 399 ~~~-~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~-~~~~~~L~~L 468 (592)
T 3ogk_B 399 GTY-LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI-GQYSPNVRWM 468 (592)
T ss_dssp HHH-CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH-HHSCTTCCEE
T ss_pred Hhh-CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH-HHhCccceEe
Confidence 23 78999999984 45543321 225679999999997533 343332222 2347778776
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.55 E-value=4.2e-14 Score=123.20 Aligned_cols=119 Identities=14% Similarity=0.179 Sum_probs=62.1
Q ss_pred eEEEcCCCCCCCCcccccCcccccEEecCCCCCccccc-cccCCCCCcEEEcc-cCCcccc-chhhccCccCcEEEeeCC
Q 037494 175 RVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPL-LICTLLNLETLEMP-AGYIDHS-PEGIWMMQKLMHLNFDSI 251 (394)
Q Consensus 175 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~-~~~l~~l-p~~i~~l~~L~~L~l~~~ 251 (394)
+.+++++++++.+|..+. .+|+.|++++|.++.+|+ .+..+++|++|+++ | .+..+ |..+..+++|++|+++ +
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls-~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLY-G 89 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECC-S
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECC-C
Confidence 345556666666655443 456666666666665554 45556666666666 5 55544 3455566666666666 6
Q ss_pred CCCCCCCCC-CCCCCcCceeCccccC--CCcchhcCCCCCCCeEEEeec
Q 037494 252 TLPAPPKNY-SSSLKNLIFISALHPS--SCTPDILSRLPTVQTLRISGD 297 (394)
Q Consensus 252 ~~~~~~p~~-l~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~ 297 (394)
|.+..+|+. ++.+++|++|++.++. ...+..+..+++|+.|++++|
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 138 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN 138 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC
Confidence 555555543 3444555555444444 112233344444444444444
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.53 E-value=4.6e-14 Score=121.74 Aligned_cols=166 Identities=15% Similarity=0.133 Sum_probs=134.2
Q ss_pred cEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchh-hccCccCcEEEeeCCCCCCCCCCC-CCCCCcCceeCccc
Q 037494 198 KYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEG-IWMMQKLMHLNFDSITLPAPPKNY-SSSLKNLIFISALH 274 (394)
Q Consensus 198 ~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~~~~ 274 (394)
+.++.+++.+..+|..+ ..+|++|+++ + .+..+|.. +..+++|++|+++ +|.+..+|+. ++.+++|++|++.+
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLG-GNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECC-SSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECC-CCccCccChhhcCCCCCcCEEECCC
Confidence 57788888899998766 4589999999 8 88888864 6799999999999 9998888765 58899999999998
Q ss_pred cC-CCcc-hhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCC
Q 037494 275 PS-SCTP-DILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELM 351 (394)
Q Consensus 275 ~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~ 351 (394)
+. ...+ ..++.+++|+.|++++|. .....+..+..+++|+.|++++ +.+..+.+ .+.. +++|+.|++++|.+.
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~-l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQ--LQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDR-LTSLQYIWLHDNPWD 161 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTT-CTTCCEEECCSCCBC
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCc--CcccCHhHhccCCcCCEEECCC-CccceeCHHHhcc-CCCccEEEecCCCee
Confidence 88 4333 447889999999999986 4433344578899999999998 67777723 5777 899999999999753
Q ss_pred CCCcccccCCCCCCeEEEecccccCce
Q 037494 352 EDPMPMLERLPRLQVMKLKRNSYFGRK 378 (394)
Q Consensus 352 ~~~~~~l~~l~~L~~L~l~~n~~~~~~ 378 (394)
+.+++|+.|+++.|.+.+..
T Consensus 162 -------~~~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 162 -------CTCPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp -------CCTTTTHHHHHHHHHCTTTB
T ss_pred -------cCCCCHHHHHHHHHhCCcee
Confidence 45678999998888877655
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.53 E-value=1.8e-14 Score=135.25 Aligned_cols=119 Identities=17% Similarity=0.190 Sum_probs=86.8
Q ss_pred eEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccc-c-CCCCCcEEEcc-cCCccccch-hhccCccCcEEEeeC
Q 037494 175 RVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLI-C-TLLNLETLEMP-AGYIDHSPE-GIWMMQKLMHLNFDS 250 (394)
Q Consensus 175 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l-~-~l~~L~~L~l~-~~~l~~lp~-~i~~l~~L~~L~l~~ 250 (394)
++++++++.++.+|..+. ..++.|++++|.+..+|... . ++.+|++|+++ | .+..++. .+..+++|++|+++
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls- 96 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLS- 96 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC-
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECC-
Confidence 578889988888887665 35888999999998887653 4 78899999999 8 8888774 58888999999999
Q ss_pred CCCCCCCCCC-CCCCCcCceeCccccC--CCcchhcCCCCCCCeEEEeec
Q 037494 251 ITLPAPPKNY-SSSLKNLIFISALHPS--SCTPDILSRLPTVQTLRISGD 297 (394)
Q Consensus 251 ~~~~~~~p~~-l~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~ 297 (394)
+|.+..+++. ++.+++|+.|++.++. ...+..+..+++|+.|++++|
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N 146 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC
Confidence 8887666653 5666777777666665 122344555555555555555
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.52 E-value=1.1e-13 Score=121.42 Aligned_cols=79 Identities=19% Similarity=0.217 Sum_probs=39.2
Q ss_pred EEEcCCCCCCCCcccccCcccccEEecCCCCCccc-cccccCCCCCcEEEcc-cCCccccchh-hccCccCcEEEeeCCC
Q 037494 176 VLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCL-PLLICTLLNLETLEMP-AGYIDHSPEG-IWMMQKLMHLNFDSIT 252 (394)
Q Consensus 176 ~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~-~~~l~~lp~~-i~~l~~L~~L~l~~~~ 252 (394)
.++.+++.+..+|..+. ++|++|++++|.+..+ |..+..+++|++|+++ | .+..+|.. +..+++|++|+++ +|
T Consensus 23 ~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls-~N 98 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLG-TN 98 (229)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC-SS
T ss_pred EeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECC-CC
Confidence 34555555555554333 4555555555555544 3334455555555555 4 45555432 3455555555555 55
Q ss_pred CCCCCC
Q 037494 253 LPAPPK 258 (394)
Q Consensus 253 ~~~~~p 258 (394)
.+..+|
T Consensus 99 ~l~~l~ 104 (229)
T 3e6j_A 99 QLTVLP 104 (229)
T ss_dssp CCCCCC
T ss_pred cCCccC
Confidence 444443
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.52 E-value=7.3e-14 Score=121.68 Aligned_cols=96 Identities=13% Similarity=0.116 Sum_probs=42.9
Q ss_pred EEEcCCCCCCCCcccccCcccccEEecCCCCCccccc--cccCCCCCcEEEcc-cCCccccch-hhccCccCcEEEeeCC
Q 037494 176 VLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPL--LICTLLNLETLEMP-AGYIDHSPE-GIWMMQKLMHLNFDSI 251 (394)
Q Consensus 176 ~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~--~l~~l~~L~~L~l~-~~~l~~lp~-~i~~l~~L~~L~l~~~ 251 (394)
+++++++.++.+|..+.. .+++|++++|.++.+++ .++.+++|++|+++ | .+..++. .+..+++|++|+++ +
T Consensus 15 ~l~~s~n~l~~iP~~~~~--~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls-~ 90 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLT-S 90 (220)
T ss_dssp EEECCSSCCSSCCSCCCT--TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC-S
T ss_pred EeEeCCCCcccCccCCCC--CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECC-C
Confidence 445555555555443322 23455555555544421 14445555555555 4 4444443 34445555555555 4
Q ss_pred CCCCCCCCC-CCCCCcCceeCcccc
Q 037494 252 TLPAPPKNY-SSSLKNLIFISALHP 275 (394)
Q Consensus 252 ~~~~~~p~~-l~~l~~L~~L~~~~~ 275 (394)
|.+..+++. ++.+++|++|++.++
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N 115 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSN 115 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTS
T ss_pred CccCccCHhHhcCCcCCCEEECCCC
Confidence 444333332 333444444443333
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.52 E-value=1.8e-14 Score=135.34 Aligned_cols=166 Identities=17% Similarity=0.104 Sum_probs=121.9
Q ss_pred cEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCccc-cc-CcccccEEecCCCCCccccc-cccCCCCCcEE
Q 037494 147 QSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPG-LE-NLFLLKYLQLNIPTLKCLPL-LICTLLNLETL 223 (394)
Q Consensus 147 r~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~-i~-~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L 223 (394)
+++.+.++... .+|.. -.+.+++|++++|.++.++.. +. .+++|++|++++|.+..+|+ .+.++++|++|
T Consensus 21 ~~l~c~~~~l~-----~iP~~--~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L 93 (361)
T 2xot_A 21 NILSCSKQQLP-----NVPQS--LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYL 93 (361)
T ss_dssp TEEECCSSCCS-----SCCSS--CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CEEEeCCCCcC-----ccCcc--CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEE
Confidence 45666665554 23321 134588999999999877644 44 88999999999999998874 58889999999
Q ss_pred Ecc-cCCccccch-hhccCccCcEEEeeCCCCCCCC-CCCCCCCCcCceeCccccC-CCcchhc----CCCCCCCeEEEe
Q 037494 224 EMP-AGYIDHSPE-GIWMMQKLMHLNFDSITLPAPP-KNYSSSLKNLIFISALHPS-SCTPDIL----SRLPTVQTLRIS 295 (394)
Q Consensus 224 ~l~-~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~~~~~~-~~~~~~l----~~l~~L~~L~l~ 295 (394)
+++ | .+..+|. .+..+++|++|+++ +|.+..+ |..++.+++|+.|++.++. ...+..+ ..+++|+.|+++
T Consensus 94 ~Ls~N-~l~~~~~~~~~~l~~L~~L~L~-~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 94 DLSSN-HLHTLDEFLFSDLQALEVLLLY-NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp ECCSS-CCCEECTTTTTTCTTCCEEECC-SSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECC
T ss_pred ECCCC-cCCcCCHHHhCCCcCCCEEECC-CCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECC
Confidence 999 8 8888876 47889999999999 8886666 4568899999999999888 4444443 568889999998
Q ss_pred ecCCccccchhhhhcCCCC--CcEEEecCC
Q 037494 296 GDLSHYHSGVSKSLCELHK--LECLKLVNG 323 (394)
Q Consensus 296 ~~~~~~~~~~~~~l~~~~~--L~~L~l~~~ 323 (394)
+|. ....-+..+..++. ++.|+++++
T Consensus 172 ~N~--l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 172 SNK--LKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp SSC--CCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred CCC--CCccCHHHhhhccHhhcceEEecCC
Confidence 885 33323345666665 367888773
No 114
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.52 E-value=2.5e-15 Score=153.49 Aligned_cols=154 Identities=14% Similarity=0.067 Sum_probs=96.5
Q ss_pred CCceEEEEEEeCCcchhhcc-CCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccE
Q 037494 121 LATVKRCFILEDLIEFISLE-QSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKY 199 (394)
Q Consensus 121 ~~~~r~L~l~~~~~~~~~~~-~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~ 199 (394)
...++++.+..+.....+.. .....|+.+.+.......-.....++.|..++.|++|+|++|.+..+|..+..+++|++
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR 251 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence 34567777754444443322 23333444333332211000012255558899999999999999999988889999999
Q ss_pred EecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccC
Q 037494 200 LQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPS 276 (394)
Q Consensus 200 L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~ 276 (394)
|+|++|.+..+|..++++++|++|+|+ | .+..+|..++.+++|++|+++ +|.+..+|.+++.+++|++|++.+|.
T Consensus 252 L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~-~N~l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCFQLKYFYFF-DNMVTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp CBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGTTCSEEECC-SSCCCCCCSSTTSCTTCCCEECTTSC
T ss_pred EEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCCCCCEEECC-CCCCCccChhhhcCCCccEEeCCCCc
Confidence 999999999999889999999999999 8 888999999999999999999 99888899889999999999998887
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.50 E-value=1.2e-13 Score=120.31 Aligned_cols=147 Identities=14% Similarity=0.164 Sum_probs=113.9
Q ss_pred cEEecCCCCCccccccccCCCCCcEEEcc-cCCccccch-hhccCccCcEEEeeCCCCCCCC-CCCCCCCCcCceeCccc
Q 037494 198 KYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPE-GIWMMQKLMHLNFDSITLPAPP-KNYSSSLKNLIFISALH 274 (394)
Q Consensus 198 ~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~~~~ 274 (394)
+.++++++.++.+|..+. .+|+.|+++ | .+..+|. .+..+++|+.|+++ +|.+..+ |..++.+++|++|++.+
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls-~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLS-NNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECC-SSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECC-CCcCCCcCHHHhhCCcCCCEEECCC
Confidence 678899999999998775 689999999 8 8888876 68889999999999 9886665 56788888999998888
Q ss_pred cC-CCcch-hcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCC
Q 037494 275 PS-SCTPD-ILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELM 351 (394)
Q Consensus 275 ~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~ 351 (394)
+. ...+. .+..+++|+.|++++|. .....+..+..+++|+.|+|++ +.+..+.+ .+.. +++|+.|+|++|++.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~-l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANK--INCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSP-LRAIQTMHLAQNPFI 165 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTT-CTTCCEEECCSSCEE
T ss_pred CcCCccCHhHccCCCCCCEEECCCCC--CCEeCHHHcCCCCCCCEEECCC-CcCCEECHHHHhC-CCCCCEEEeCCCCcC
Confidence 87 44443 35778888888888886 4444456677778888888877 66776623 5666 778888888877765
Q ss_pred C
Q 037494 352 E 352 (394)
Q Consensus 352 ~ 352 (394)
+
T Consensus 166 c 166 (220)
T 2v9t_B 166 C 166 (220)
T ss_dssp C
T ss_pred C
Confidence 4
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.50 E-value=1.2e-13 Score=120.31 Aligned_cols=149 Identities=13% Similarity=0.062 Sum_probs=115.7
Q ss_pred ccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccch--hhccCccCcEEEeeCCCCCCCCCC-CCCCCCcCceeCc
Q 037494 197 LKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPE--GIWMMQKLMHLNFDSITLPAPPKN-YSSSLKNLIFISA 272 (394)
Q Consensus 197 L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~~ 272 (394)
-+.++++++.++.+|..+. ..+++|+++ | .+..++. .+..+++|++|+++ +|.+..+++ .++.+++|++|++
T Consensus 13 ~~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~-~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHIP--QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFS-NNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECC-SSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEeEeCCCCcccCccCCC--CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECC-CCcCCEECHHHhCCCCCCCEEEC
Confidence 3689999999999998764 467899999 8 8888843 37899999999999 998777765 5888889999988
Q ss_pred cccC--CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEeccc
Q 037494 273 LHPS--SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTE 349 (394)
Q Consensus 273 ~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~ 349 (394)
.++. ...+..++.+++|+.|++++|. .....+..+..+++|+.|+|++ +++..+.| .+.. +++|+.|+|++|.
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~-l~~L~~L~L~~N~ 164 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNR--ITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDT-LHSLSTLNLLANP 164 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSC--CCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTT-CTTCCEEECCSCC
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCc--CCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcC-CCCCCEEEecCcC
Confidence 8887 3334457888888888888886 4444566777788888888877 66776644 6777 7888888888887
Q ss_pred CCCC
Q 037494 350 LMED 353 (394)
Q Consensus 350 l~~~ 353 (394)
+.+.
T Consensus 165 l~c~ 168 (220)
T 2v70_A 165 FNCN 168 (220)
T ss_dssp EECS
T ss_pred CcCC
Confidence 6543
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.50 E-value=2.3e-13 Score=119.22 Aligned_cols=149 Identities=15% Similarity=0.087 Sum_probs=124.2
Q ss_pred ccEEecCCCCCccccccccCCCCCcEEEcc-cCCcccc-chhhccCccCcEEEeeCCCCCCCCCCC-CCCCCcCceeCcc
Q 037494 197 LKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHS-PEGIWMMQKLMHLNFDSITLPAPPKNY-SSSLKNLIFISAL 273 (394)
Q Consensus 197 L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~~~ 273 (394)
-+.++.+++.+..+|..+. .+|++|+++ | .+..+ |..+..+++|++|+++ +|.+..+|.. ++.+++|+.|++.
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~-~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDN-QITKLEPGVFDSLINLKELYLG-SNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCC-ccCccCHHHhhCccCCcEEECC-CCCCCCcChhhcccCCCcCEEECC
Confidence 4678899999999998765 899999999 8 78777 5578899999999999 9998888865 6899999999999
Q ss_pred ccC-CCcc-hhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccC
Q 037494 274 HPS-SCTP-DILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTEL 350 (394)
Q Consensus 274 ~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l 350 (394)
++. ...+ ..+..+++|+.|++++|. ...+|..+..+++|+.|++++ +++..+.+ .+.. +++|+.|++++|.+
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~---l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~-l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNK---LTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDR-LSSLTHAYLFGNPW 171 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC---CCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTT-CTTCCEEECTTSCB
T ss_pred CCcCCccChhHhCcchhhCeEeccCCc---ccccCcccccCCCCCEEECCC-CcCCccCHHHHhC-CCCCCEEEeeCCCc
Confidence 988 4333 446889999999999985 447788888999999999998 67888823 6777 89999999999988
Q ss_pred CCCC
Q 037494 351 MEDP 354 (394)
Q Consensus 351 ~~~~ 354 (394)
.+..
T Consensus 172 ~c~c 175 (229)
T 3e6j_A 172 DCEC 175 (229)
T ss_dssp CTTB
T ss_pred cCCc
Confidence 6653
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.50 E-value=4.4e-14 Score=117.54 Aligned_cols=127 Identities=17% Similarity=0.068 Sum_probs=89.9
Q ss_pred ccCCceeEEEcCCCCCC--CCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccc-cchhhccCccCc
Q 037494 169 ENFKYLRVLNWGSAVLD--QFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDH-SPEGIWMMQKLM 244 (394)
Q Consensus 169 ~~l~~L~~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~-lp~~i~~l~~L~ 244 (394)
...++|++|++++|.+. .+|..+..+++|++|++++|.+..+ ..++.+++|++|+++ | .+.. +|..+..+++|+
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCC
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCC-cCchHHHHHHhhCCCCC
Confidence 34577888888888877 7777778888888888888887777 677778888888888 7 6666 666666688888
Q ss_pred EEEeeCCCCCCCCC--CCCCCCCcCceeCccccC-CCcch----hcCCCCCCCeEEEeecC
Q 037494 245 HLNFDSITLPAPPK--NYSSSLKNLIFISALHPS-SCTPD----ILSRLPTVQTLRISGDL 298 (394)
Q Consensus 245 ~L~l~~~~~~~~~p--~~l~~l~~L~~L~~~~~~-~~~~~----~l~~l~~L~~L~l~~~~ 298 (394)
+|+++ +|.+..+| ..++.+++|+.|++.++. ...+. .+..+++|+.|++++|.
T Consensus 99 ~L~Ls-~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 99 HLNLS-GNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp EEECB-SSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred EEecc-CCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 88888 77766655 456666667776666665 22222 56666666666666664
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.48 E-value=8.7e-15 Score=149.48 Aligned_cols=190 Identities=13% Similarity=0.013 Sum_probs=112.6
Q ss_pred CCCccEEEEecCCCccchhcchhHHhccCCceeEE-----EcCCCCCCCCcccccCcccccEEecCCCCCccccccccCC
Q 037494 143 DMYLQSFLNHSSESDHLALIDCENFCENFKYLRVL-----NWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTL 217 (394)
Q Consensus 143 ~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L-----~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l 217 (394)
.+.++.|.+.++.... .-..+ -....|+.+ +++.+.+...|..+..+.+|+.|+|++|.+..+|..++++
T Consensus 172 ~~~~~~l~L~~n~~~~----~~~~~-l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l 246 (727)
T 4b8c_D 172 TPLTPKIELFANGKDE----ANQAL-LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKY 246 (727)
T ss_dssp -------------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGC
T ss_pred CCccceEEeeCCCCCc----chhhH-hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCC
Confidence 3457777776665542 00111 222223332 2333444445788899999999999999999999999999
Q ss_pred CCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccC-CCcchhcCCCCCCCeEEEe
Q 037494 218 LNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPS-SCTPDILSRLPTVQTLRIS 295 (394)
Q Consensus 218 ~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~ 295 (394)
.+|++|+|+ | .+..+|..++.+++|++|+++ +|.+..+|..++.+++|++|++.+|. ..++.+++.+++|+.|+++
T Consensus 247 ~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls-~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 247 DFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLS-HNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp CSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECT-TSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECT
T ss_pred CCCCEEEeeCC-cCcccChhhhCCCCCCEEeCc-CCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCC
Confidence 999999999 8 888999999999999999999 99988999999999999999999998 7778889999999999999
Q ss_pred ecCCccccchhhhhcCCCC-CcEEEecCCCCCCccCCCCCCCCCCceEEEEecc
Q 037494 296 GDLSHYHSGVSKSLCELHK-LECLKLVNGSKLSRMVLSEYQFPPSLIQLSLSNT 348 (394)
Q Consensus 296 ~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~L~~L~p~~~~~l~~L~~L~L~~~ 348 (394)
+|. ..+..|..+..... +..+++.+ +.+... . +..|+.|+++.|
T Consensus 325 ~N~--l~~~~p~~~~~~~~~~~~l~l~~-N~l~~~-----~-p~~l~~l~l~~n 369 (727)
T 4b8c_D 325 GNP--LEKQFLKILTEKSVTGLIFYLRD-NRPEIP-----L-PHERRFIEINTD 369 (727)
T ss_dssp TSC--CCSHHHHHHHHHHHHHHHHHHHH-CCCCCC-----C-CCC---------
T ss_pred CCc--cCCCChHHHhhcchhhhHHhhcc-CcccCc-----C-ccccceeEeecc
Confidence 997 66666666544321 11244544 222211 1 556777777776
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.46 E-value=9.8e-14 Score=115.44 Aligned_cols=130 Identities=18% Similarity=0.158 Sum_probs=106.1
Q ss_pred CCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCcc-ccccccCCCC
Q 037494 141 QSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKC-LPLLICTLLN 219 (394)
Q Consensus 141 ~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-lp~~l~~l~~ 219 (394)
...++++.|.+.++... ...++..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..++.+++
T Consensus 21 ~~~~~L~~L~l~~n~l~---~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 96 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSN---DGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN 96 (168)
T ss_dssp SCTTSCSEEECCSCBCB---TTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred CCcccCCEEECCCCCCC---hhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCC
Confidence 34577888888888764 123454458889999999999998877 778889999999999998887 6666667999
Q ss_pred CcEEEcc-cCCccccc--hhhccCccCcEEEeeCCCCCCCCCC----CCCCCCcCceeCccccC
Q 037494 220 LETLEMP-AGYIDHSP--EGIWMMQKLMHLNFDSITLPAPPKN----YSSSLKNLIFISALHPS 276 (394)
Q Consensus 220 L~~L~l~-~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~----~l~~l~~L~~L~~~~~~ 276 (394)
|++|+++ | .+..+| ..+..+++|++|+++ +|.+..+|. .++.+++|+.|++..+.
T Consensus 97 L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~-~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 97 LTHLNLSGN-KLKDISTLEPLKKLECLKSLDLF-NCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CCEEECBSS-SCCSSGGGGGGSSCSCCCEEECC-SSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCEEeccCC-ccCcchhHHHHhcCCCCCEEEee-CCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 9999999 8 888876 678889999999999 888777777 68889999999988876
No 121
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.45 E-value=5.1e-16 Score=155.40 Aligned_cols=244 Identities=13% Similarity=0.084 Sum_probs=158.0
Q ss_pred CCceEEEEEEeCCcchhhc-c--CCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCC-----Cccccc
Q 037494 121 LATVKRCFILEDLIEFISL-E--QSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQ-----FPPGLE 192 (394)
Q Consensus 121 ~~~~r~L~l~~~~~~~~~~-~--~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~-----lp~~i~ 192 (394)
...+++|.+..+....... . ..+++|++|.+.++.... ...++.++..+++|++|++++|.+.. ++....
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~--~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS--TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE--HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC--HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 4467888888554433211 1 257899999999884321 22356666789999999999998653 333334
Q ss_pred CcccccEEecCCCC--Cc--cccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCC-------------
Q 037494 193 NLFLLKYLQLNIPT--LK--CLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLP------------- 254 (394)
Q Consensus 193 ~l~~L~~L~l~~~~--l~--~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~------------- 254 (394)
.+++|+.|++++|. +. .++.-+.++++|++|+++ |..+..+|..+..+++|++|++. .+..
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~-~~~~~~~~~~~~~l~~~ 260 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG-GYTAEVRPDVYSGLSVA 260 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS-BCCCCCCHHHHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc-cccCccchhhHHHHHHH
Confidence 67799999999886 22 233333557899999999 76677778788888889988865 4421
Q ss_pred ------------------CCCCCCCCCCCcCceeCccccC---CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCC
Q 037494 255 ------------------APPKNYSSSLKNLIFISALHPS---SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELH 313 (394)
Q Consensus 255 ------------------~~~p~~l~~l~~L~~L~~~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~ 313 (394)
..++..+..+++|++|++..|. ......+..+++|+.|++.++- ....++.....++
T Consensus 261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~--~~~~l~~l~~~~~ 338 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYI--EDAGLEVLASTCK 338 (594)
T ss_dssp HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGG--HHHHHHHHHHHCT
T ss_pred HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCcc--CHHHHHHHHHhCC
Confidence 0111112245778888887776 1122335678888888888773 3333444444578
Q ss_pred CCcEEEecC--------CCCCCccC-C-CCCCCCCCceEEEEecccCCCCCccccc-CCCCCCeEEEe
Q 037494 314 KLECLKLVN--------GSKLSRMV-L-SEYQFPPSLIQLSLSNTELMEDPMPMLE-RLPRLQVMKLK 370 (394)
Q Consensus 314 ~L~~L~l~~--------~~~L~~L~-p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~-~l~~L~~L~l~ 370 (394)
+|+.|++.+ +..+..-. . .... +++|+.|.+..+.++...+..+. .+++|+.|+++
T Consensus 339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~-~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~ 405 (594)
T 2p1m_B 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMG-CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405 (594)
T ss_dssp TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHH-CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred CCCEEEEecCcccccccCCCCCHHHHHHHHHh-chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence 888888843 12222110 1 1123 68899998888887655555555 58999999997
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.44 E-value=7e-14 Score=113.90 Aligned_cols=104 Identities=14% Similarity=0.055 Sum_probs=70.9
Q ss_pred ccCCceeEEEcCCCCCC--CCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccc-cchhhccCccCc
Q 037494 169 ENFKYLRVLNWGSAVLD--QFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDH-SPEGIWMMQKLM 244 (394)
Q Consensus 169 ~~l~~L~~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~-lp~~i~~l~~L~ 244 (394)
...++|+.|++++|.+. .+|..++.+++|++|++++|.+..+ ..++.+++|++|+++ | .+.. +|..++.+++|+
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCC
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCC
Confidence 34567788888888877 6777777788888888888877776 567778888888888 7 6666 666666678888
Q ss_pred EEEeeCCCCCCCCC--CCCCCCCcCceeCcccc
Q 037494 245 HLNFDSITLPAPPK--NYSSSLKNLIFISALHP 275 (394)
Q Consensus 245 ~L~l~~~~~~~~~p--~~l~~l~~L~~L~~~~~ 275 (394)
+|+++ +|.+..+| ..++.+++|++|++.+|
T Consensus 92 ~L~ls-~N~i~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 92 HLNLS-GNKIKDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp EEECT-TSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred EEECC-CCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence 88887 76655443 33444444444444433
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.42 E-value=1.7e-13 Score=115.03 Aligned_cols=126 Identities=17% Similarity=0.151 Sum_probs=81.6
Q ss_pred ccCCceeEEEcCCCCCCCCcccccCcc-cccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhh-ccCccCcE
Q 037494 169 ENFKYLRVLNWGSAVLDQFPPGLENLF-LLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGI-WMMQKLMH 245 (394)
Q Consensus 169 ~~l~~L~~L~l~~~~~~~lp~~i~~l~-~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i-~~l~~L~~ 245 (394)
..+.+|++|++++|.++.+|. +..+. +|++|++++|.+..+ +.++.+++|++|+++ | .+..+|+.+ +.+++|++
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTE 92 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCE
T ss_pred CCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCCE
Confidence 556677777777777776644 44444 777777777777766 466777777777777 6 666666544 66777777
Q ss_pred EEeeCCCCCCCCCC--CCCCCCcCceeCccccC-CCcch----hcCCCCCCCeEEEeecC
Q 037494 246 LNFDSITLPAPPKN--YSSSLKNLIFISALHPS-SCTPD----ILSRLPTVQTLRISGDL 298 (394)
Q Consensus 246 L~l~~~~~~~~~p~--~l~~l~~L~~L~~~~~~-~~~~~----~l~~l~~L~~L~l~~~~ 298 (394)
|+++ +|.+..+|. .++.+++|+.|++.++. ...+. .++.+++|+.|+++.+.
T Consensus 93 L~L~-~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 93 LILT-NNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EECC-SCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EECC-CCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 7777 776666665 55666666666666655 33333 25566666666666664
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.41 E-value=1.9e-13 Score=114.68 Aligned_cols=129 Identities=12% Similarity=0.066 Sum_probs=111.7
Q ss_pred cCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccc-cCCC
Q 037494 140 EQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLI-CTLL 218 (394)
Q Consensus 140 ~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l-~~l~ 218 (394)
...+.+++.|.+.++... .++.+....++|++|++++|.++.+ +.++.+++|++|++++|.+..+|+.+ +.++
T Consensus 15 ~~~~~~L~~L~l~~n~l~-----~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-----VIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp EECTTSCEEEECTTSCCC-----SCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred cCCcCCceEEEeeCCCCc-----hhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 356788999999998876 3455533344999999999999987 67999999999999999999998776 8899
Q ss_pred CCcEEEcc-cCCccccch--hhccCccCcEEEeeCCCCCCCCCCC----CCCCCcCceeCccccC
Q 037494 219 NLETLEMP-AGYIDHSPE--GIWMMQKLMHLNFDSITLPAPPKNY----SSSLKNLIFISALHPS 276 (394)
Q Consensus 219 ~L~~L~l~-~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~~----l~~l~~L~~L~~~~~~ 276 (394)
+|++|+++ | .+..+|. .+..+++|++|+++ +|.+..+|.. ++.+++|+.|++..+.
T Consensus 89 ~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~-~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 89 DLTELILTNN-SLVELGDLDPLASLKSLTYLCIL-RNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp TCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECC-SSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCEEECCCC-cCCcchhhHhhhcCCCCCEEEec-CCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 99999999 8 8899987 78999999999999 9998888875 8899999999998887
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.40 E-value=1.1e-13 Score=112.74 Aligned_cols=126 Identities=19% Similarity=0.178 Sum_probs=103.1
Q ss_pred CCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCcc-ccccccCCCCC
Q 037494 142 SDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKC-LPLLICTLLNL 220 (394)
Q Consensus 142 ~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-lp~~l~~l~~L 220 (394)
..++++.|.+.++... ...++..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..++.+++|
T Consensus 15 ~~~~l~~L~l~~n~l~---~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 15 TPSDVKELVLDNSRSN---EGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90 (149)
T ss_dssp CGGGCSEEECTTCBCB---TTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred CCccCeEEEccCCcCC---hhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence 4467888888888764 123455558899999999999998877 778899999999999999887 77777779999
Q ss_pred cEEEcc-cCCccccc--hhhccCccCcEEEeeCCCCCCCCCC----CCCCCCcCceeCcc
Q 037494 221 ETLEMP-AGYIDHSP--EGIWMMQKLMHLNFDSITLPAPPKN----YSSSLKNLIFISAL 273 (394)
Q Consensus 221 ~~L~l~-~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~----~l~~l~~L~~L~~~ 273 (394)
++|+++ | .+..+| ..++.+++|++|+++ +|.+...|+ .++.+++|+.|++.
T Consensus 91 ~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~-~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 91 THLNLSGN-KIKDLSTIEPLKKLENLKSLDLF-NCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CEEECTTS-CCCSHHHHGGGGGCTTCCEEECT-TCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CEEECCCC-cCCChHHHHHHhhCCCCCEEeCc-CCcccchHHHHHHHHHHCCCcccccCC
Confidence 999999 8 788775 678899999999999 988777776 47778888888765
No 126
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.37 E-value=8.2e-15 Score=146.63 Aligned_cols=268 Identities=15% Similarity=0.112 Sum_probs=156.6
Q ss_pred CCceEEEEEEeCC-cch--hhcc-CCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCC--CC--CCccccc
Q 037494 121 LATVKRCFILEDL-IEF--ISLE-QSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAV--LD--QFPPGLE 192 (394)
Q Consensus 121 ~~~~r~L~l~~~~-~~~--~~~~-~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~--~~--~lp~~i~ 192 (394)
..++++|.+..+. ... ++.. ..+++|+.|.+.++.........++.+...+++|++|+++++. +. .++..+.
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~ 208 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT 208 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHH
Confidence 3577888887331 112 2222 3678888888887764321111234444567788888888776 22 1222234
Q ss_pred CcccccEEecCCC-CCccccccccCCCCCcEEEcc-cC------------------------------CccccchhhccC
Q 037494 193 NLFLLKYLQLNIP-TLKCLPLLICTLLNLETLEMP-AG------------------------------YIDHSPEGIWMM 240 (394)
Q Consensus 193 ~l~~L~~L~l~~~-~l~~lp~~l~~l~~L~~L~l~-~~------------------------------~l~~lp~~i~~l 240 (394)
.+++|++|++++| .+..+|..+.++++|+.|++. +. ....+|..+..+
T Consensus 209 ~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~ 288 (594)
T 2p1m_B 209 RCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVC 288 (594)
T ss_dssp HCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHH
T ss_pred hCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhh
Confidence 4678888888877 455566666666667777643 21 123344445578
Q ss_pred ccCcEEEeeCCCCCCC--CCCCCCCCCcCceeCccccC--CCcchhcCCCCCCCeEEEeecC-------Cccccc-hhhh
Q 037494 241 QKLMHLNFDSITLPAP--PKNYSSSLKNLIFISALHPS--SCTPDILSRLPTVQTLRISGDL-------SHYHSG-VSKS 308 (394)
Q Consensus 241 ~~L~~L~l~~~~~~~~--~p~~l~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~~-------~~~~~~-~~~~ 308 (394)
++|++|+++ +|.... ++..++.+++|++|.+.++- .........+++|+.|++.++. ...... +...
T Consensus 289 ~~L~~L~L~-~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l 367 (594)
T 2p1m_B 289 SRLTTLNLS-YATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV 367 (594)
T ss_dssp TTCCEEECT-TCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH
T ss_pred CCCCEEEcc-CCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH
Confidence 999999999 877321 11225688999999998774 1122223357899999996531 012222 2222
Q ss_pred hcCCCCCcEEEecCCCCCCccCC-CC-CCCCCCceEEEEe--c----ccCCCCCc-----ccccCCCCCCeEEEeccccc
Q 037494 309 LCELHKLECLKLVNGSKLSRMVL-SE-YQFPPSLIQLSLS--N----TELMEDPM-----PMLERLPRLQVMKLKRNSYF 375 (394)
Q Consensus 309 l~~~~~L~~L~l~~~~~L~~L~p-~~-~~~l~~L~~L~L~--~----~~l~~~~~-----~~l~~l~~L~~L~l~~n~~~ 375 (394)
...+++|+.|.+.+ +++..-.+ .+ .. +++|+.|+++ + +.++..+. ..+..+++|+.|++++ .++
T Consensus 368 ~~~~~~L~~L~~~~-~~l~~~~~~~l~~~-~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~ 444 (594)
T 2p1m_B 368 SMGCPKLESVLYFC-RQMTNAALITIARN-RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLT 444 (594)
T ss_dssp HHHCTTCCEEEEEE-SCCCHHHHHHHHHH-CTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCC
T ss_pred HHhchhHHHHHHhc-CCcCHHHHHHHHhh-CCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-ccc
Confidence 34588999997765 44443211 22 24 7899999999 3 34432221 1256789999999965 444
Q ss_pred CceeEEeCCCCCcCCccc
Q 037494 376 GRKLACVGSGGFPELQVL 393 (394)
Q Consensus 376 ~~~~~~~~~~~fp~L~~L 393 (394)
+..+... ...+++|+.|
T Consensus 445 ~~~~~~l-~~~~~~L~~L 461 (594)
T 2p1m_B 445 DKVFEYI-GTYAKKMEML 461 (594)
T ss_dssp HHHHHHH-HHHCTTCCEE
T ss_pred HHHHHHH-HHhchhccEe
Confidence 3322211 1126667665
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.36 E-value=1.8e-12 Score=110.34 Aligned_cols=120 Identities=15% Similarity=0.141 Sum_probs=86.2
Q ss_pred eEEEcCCCCCCCCcccccCcccccEEecCCCCCcccccc--ccCCCCCcEEEcc-cCCcccc-chhhccCccCcEEEeeC
Q 037494 175 RVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLL--ICTLLNLETLEMP-AGYIDHS-PEGIWMMQKLMHLNFDS 250 (394)
Q Consensus 175 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~--l~~l~~L~~L~l~-~~~l~~l-p~~i~~l~~L~~L~l~~ 250 (394)
++++++++.+..+|..+.. +|++|++++|.+..+|+. ++.+++|++|+++ | .+..+ |..+..+++|++|+++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls- 86 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLG- 86 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECC-
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECC-
Confidence 5677888887777776654 778888888887777653 6778888888888 7 66666 4567778888888888
Q ss_pred CCCCCCCCCC-CCCCCcCceeCccccC--CCcchhcCCCCCCCeEEEeecC
Q 037494 251 ITLPAPPKNY-SSSLKNLIFISALHPS--SCTPDILSRLPTVQTLRISGDL 298 (394)
Q Consensus 251 ~~~~~~~p~~-l~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~~ 298 (394)
+|.+..+++. ++.+++|++|++.++. ...+..++.+++|+.|++++|.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 7776655543 6677777777777766 3334566777777777777775
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.35 E-value=5.5e-12 Score=107.37 Aligned_cols=120 Identities=18% Similarity=0.202 Sum_probs=78.8
Q ss_pred eEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccch-hhccCccCcEEEeeCCC
Q 037494 175 RVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPE-GIWMMQKLMHLNFDSIT 252 (394)
Q Consensus 175 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~-~i~~l~~L~~L~l~~~~ 252 (394)
++++++++.++.+|..+. .+|++|++++|.+..+|..+..+++|++|+++ | .+..++. .+..+++|++|+++ +|
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls-~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILS-YN 88 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC-SS
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECC-CC
Confidence 456677777776665543 46777777777777777667777777777777 6 6666654 46677777777777 77
Q ss_pred CCCCCCC-CCCCCCcCceeCccccC-CCcc-hhcCCCCCCCeEEEeecC
Q 037494 253 LPAPPKN-YSSSLKNLIFISALHPS-SCTP-DILSRLPTVQTLRISGDL 298 (394)
Q Consensus 253 ~~~~~p~-~l~~l~~L~~L~~~~~~-~~~~-~~l~~l~~L~~L~l~~~~ 298 (394)
.+..+++ .++.+++|+.|++.++. ...+ ..+..+++|+.|++.+|+
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 6555554 46667777777776666 3333 235666777777777665
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.34 E-value=1.7e-12 Score=128.63 Aligned_cols=150 Identities=15% Similarity=0.129 Sum_probs=115.2
Q ss_pred hHHhccCCceeEEE-cCCCCCCCCcc------cccC--cccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccc
Q 037494 165 ENFCENFKYLRVLN-WGSAVLDQFPP------GLEN--LFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSP 234 (394)
Q Consensus 165 ~~~~~~l~~L~~L~-l~~~~~~~lp~------~i~~--l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp 234 (394)
+..+..+++|+.|+ ++.+.+..++. .+.. ...|++|++++|.++.+|. ++.+++|++|+++ | .+..+|
T Consensus 402 ~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp 479 (567)
T 1dce_A 402 KETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHN-RLRALP 479 (567)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSS-CCCCCC
T ss_pred HHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcc-cccccc
Confidence 45557888888888 55544332221 1111 1258899999999999986 9999999999999 8 888999
Q ss_pred hhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccC-CCc--chhcCCCCCCCeEEEeecCCccccc---hhhh
Q 037494 235 EGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPS-SCT--PDILSRLPTVQTLRISGDLSHYHSG---VSKS 308 (394)
Q Consensus 235 ~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~-~~~--~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~ 308 (394)
..++.+++|+.|+++ +|.+..+| +++.+++|++|++.+|. ... |..++.+++|+.|++++|. .... ....
T Consensus 480 ~~~~~l~~L~~L~Ls-~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~--l~~~~~~~~~l 555 (567)
T 1dce_A 480 PALAALRCLEVLQAS-DNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS--LCQEEGIQERL 555 (567)
T ss_dssp GGGGGCTTCCEEECC-SSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG--GGGSSSCTTHH
T ss_pred hhhhcCCCCCEEECC-CCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc--CCCCccHHHHH
Confidence 999999999999999 99988887 89999999999999988 444 7889999999999999986 2222 2223
Q ss_pred hcCCCCCcEEEe
Q 037494 309 LCELHKLECLKL 320 (394)
Q Consensus 309 l~~~~~L~~L~l 320 (394)
+..+++|+.|++
T Consensus 556 ~~~lp~L~~L~l 567 (567)
T 1dce_A 556 AEMLPSVSSILT 567 (567)
T ss_dssp HHHCTTCSEEEC
T ss_pred HHHCcccCccCC
Confidence 445788888864
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.31 E-value=5.5e-14 Score=120.35 Aligned_cols=109 Identities=18% Similarity=0.142 Sum_probs=65.8
Q ss_pred CCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCCCC
Q 037494 186 QFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSL 264 (394)
Q Consensus 186 ~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l 264 (394)
.+|..++.+++|++|++++|.+..+| .++++++|++|+++ | .+..+|..+..+++|++|+++ +|.+..+| .++.+
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~-~N~l~~l~-~~~~l 114 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWIS-YNQIASLS-GIEKL 114 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEE-EEECCCHH-HHHHH
T ss_pred hhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECc-CCcCCcCC-ccccC
Confidence 33445666666666666666666665 56666666666666 5 566666555556666666666 66555544 45555
Q ss_pred CcCceeCccccC-CCcc--hhcCCCCCCCeEEEeecC
Q 037494 265 KNLIFISALHPS-SCTP--DILSRLPTVQTLRISGDL 298 (394)
Q Consensus 265 ~~L~~L~~~~~~-~~~~--~~l~~l~~L~~L~l~~~~ 298 (394)
++|+.|++.++. ...+ ..+..+++|+.|++++|.
T Consensus 115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 566666665555 2212 356777777777777775
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.27 E-value=1.5e-11 Score=104.46 Aligned_cols=119 Identities=13% Similarity=0.094 Sum_probs=92.2
Q ss_pred cEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchh--hccCccCcEEEeeCCCCCCCC-CCCCCCCCcCceeCcc
Q 037494 198 KYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEG--IWMMQKLMHLNFDSITLPAPP-KNYSSSLKNLIFISAL 273 (394)
Q Consensus 198 ~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~--i~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~~~ 273 (394)
++++++++.++.+|..+.. +|++|+++ | .+..+|.. ++.+++|++|+++ +|.+..+ |..++.+++|++|++.
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELK-RNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECC-SSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCC-cCCccCCccccccCCCCCEEECC-CCCCCCcCHhHcCCcccCCEEECC
Confidence 7899999999999987754 89999999 8 88888764 8899999999999 9886666 5668888888888888
Q ss_pred ccC-C-CcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecC
Q 037494 274 HPS-S-CTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVN 322 (394)
Q Consensus 274 ~~~-~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 322 (394)
++. . ..+..++.+++|+.|++++|. .....|..+..+++|+.|++++
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQ--ISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSC--CCEECTTSSTTCTTCCEEECTT
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCc--CCeeCHHHhhcCCCCCEEEeCC
Confidence 877 2 233346777777888877775 4444556666666777777766
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.25 E-value=4.8e-11 Score=101.47 Aligned_cols=118 Identities=16% Similarity=0.175 Sum_probs=83.2
Q ss_pred cEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCC-CCCCCCcCceeCcccc
Q 037494 198 KYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKN-YSSSLKNLIFISALHP 275 (394)
Q Consensus 198 ~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~~~~~ 275 (394)
++++++++.++.+|..+. .+|++|+++ | .+..+|..+..+++|++|+++ +|.+..+++ .++.+++|++|++.++
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls-~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLS-NNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCC-cCchhHHHhhcccCCCEEECC-CCcCCEeCHhHccCCCCCCEEECCCC
Confidence 678999999999998764 689999999 8 899999899999999999999 988777764 4777777777777766
Q ss_pred C--CCcchhcCCCCCCCeEEEeecCCccccchh-hhhcCCCCCcEEEecC
Q 037494 276 S--SCTPDILSRLPTVQTLRISGDLSHYHSGVS-KSLCELHKLECLKLVN 322 (394)
Q Consensus 276 ~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~~~~L~~L~l~~ 322 (394)
. ...+..+..+++|+.|++++|. .. .++ ..+..+++|+.|++++
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~--l~-~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGND--IS-VVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSC--CC-BCCTTTTTTCTTCCEEECCS
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCC--CC-eeChhhhhcCccccEEEeCC
Confidence 6 2222345556666666666653 22 222 2344444555555544
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.22 E-value=1.1e-13 Score=118.35 Aligned_cols=126 Identities=17% Similarity=0.145 Sum_probs=105.5
Q ss_pred hhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCcc
Q 037494 164 CENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQK 242 (394)
Q Consensus 164 l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~ 242 (394)
++..+..+++|++|++++|.++.+| .++.+++|++|++++|.+..+|..++.+++|++|+++ | .+..+| .++.+++
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~ 116 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVN 116 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHH
T ss_pred hhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCC
Confidence 3445599999999999999999988 8999999999999999999999888888999999999 8 888887 6889999
Q ss_pred CcEEEeeCCCCCCCCCC--CCCCCCcCceeCccccC-CCc-ch----------hcCCCCCCCeEE
Q 037494 243 LMHLNFDSITLPAPPKN--YSSSLKNLIFISALHPS-SCT-PD----------ILSRLPTVQTLR 293 (394)
Q Consensus 243 L~~L~l~~~~~~~~~p~--~l~~l~~L~~L~~~~~~-~~~-~~----------~l~~l~~L~~L~ 293 (394)
|++|+++ +|.+..++. .++.+++|++|++.++. ... +. .+..+++|+.|+
T Consensus 117 L~~L~l~-~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 117 LRVLYMS-NNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SSEEEES-EEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCEEECC-CCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 9999999 988777664 68899999999998887 222 11 256677777665
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.22 E-value=1.1e-10 Score=97.70 Aligned_cols=120 Identities=23% Similarity=0.260 Sum_probs=69.2
Q ss_pred eEEEcCCCCCCCCcccccCcccccEEecCCCCCcccccc-ccCCCCCcEEEcc-cCCccccchh-hccCccCcEEEeeCC
Q 037494 175 RVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLL-ICTLLNLETLEMP-AGYIDHSPEG-IWMMQKLMHLNFDSI 251 (394)
Q Consensus 175 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~-~~~l~~lp~~-i~~l~~L~~L~l~~~ 251 (394)
+.++++++++..+|..+. .+|+.|++++|.++.+|.. ++.+++|++|+++ | .+..+|.. +..+++|++|+++ +
T Consensus 10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~-~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLH-E 85 (177)
T ss_dssp TEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECC-S
T ss_pred CEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECC-C
Confidence 455666666666654332 4666666666666655543 3556666666666 5 55555543 4566666666666 6
Q ss_pred CCCCCCCCC-CCCCCcCceeCccccC-CCcch-hcCCCCCCCeEEEeecC
Q 037494 252 TLPAPPKNY-SSSLKNLIFISALHPS-SCTPD-ILSRLPTVQTLRISGDL 298 (394)
Q Consensus 252 ~~~~~~p~~-l~~l~~L~~L~~~~~~-~~~~~-~l~~l~~L~~L~l~~~~ 298 (394)
|.+..+|+. ++.+++|++|++.++. ...+. .+..+++|+.|++++|.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 665555543 4556666666666555 22222 24556666666666665
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.15 E-value=1.6e-10 Score=96.42 Aligned_cols=98 Identities=21% Similarity=0.232 Sum_probs=74.4
Q ss_pred eEEEcCCCCCCCCcccccCcccccEEecCCCCCccc-cccccCCCCCcEEEcc-cCCccccchh-hccCccCcEEEeeCC
Q 037494 175 RVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCL-PLLICTLLNLETLEMP-AGYIDHSPEG-IWMMQKLMHLNFDSI 251 (394)
Q Consensus 175 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~-~~~l~~lp~~-i~~l~~L~~L~l~~~ 251 (394)
+.++++++.+..+|..+. .+|++|++++|.+..+ |..++++++|++|+++ | .+..+|.. +..+++|++|+++ +
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~-~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLN-D 90 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC-S
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECC-C
Confidence 577888888888877664 6788888888888776 4457778888888888 7 77777765 4678888888888 8
Q ss_pred CCCCCCCCC-CCCCCcCceeCccccC
Q 037494 252 TLPAPPKNY-SSSLKNLIFISALHPS 276 (394)
Q Consensus 252 ~~~~~~p~~-l~~l~~L~~L~~~~~~ 276 (394)
|.+..+|+. ++.+++|+.|++.++.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CccceeCHHHhccccCCCEEEeCCCC
Confidence 777777765 6777777777777665
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.14 E-value=3.2e-10 Score=94.87 Aligned_cols=124 Identities=15% Similarity=0.115 Sum_probs=84.5
Q ss_pred CcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCC-CCCCCcCceeCccccC-CCcc-hhcCCCCCCCeEEEe
Q 037494 220 LETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNY-SSSLKNLIFISALHPS-SCTP-DILSRLPTVQTLRIS 295 (394)
Q Consensus 220 L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~~~~~~-~~~~-~~l~~l~~L~~L~l~ 295 (394)
.+.++++ + .+..+|..+. ++|+.|+++ ++.+..+|+. ++.+++|++|++.++. ...+ ..++.+++|+.|+++
T Consensus 9 ~~~l~~~~~-~l~~~p~~~~--~~l~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSK-GLTSVPTGIP--SSATRLELE-SNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSS-CCSSCCTTCC--TTCSEEECC-SSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCC-CCccCCCCCC--CCCcEEEeC-CCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 4678888 6 7888886543 689999999 8887777654 5778888888887776 3333 335677777777777
Q ss_pred ecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC--CCCCCCCCceEEEEecccCCC
Q 037494 296 GDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL--SEYQFPPSLIQLSLSNTELME 352 (394)
Q Consensus 296 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p--~~~~~l~~L~~L~L~~~~l~~ 352 (394)
+|. .....+..+..+++|+.|++++ +.+..+ | .+.. +++|+.|++++|.+.+
T Consensus 85 ~N~--l~~~~~~~~~~l~~L~~L~l~~-N~l~~~-~~~~~~~-l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 85 ENK--LQSLPNGVFDKLTQLKELALDT-NQLKSV-PDGIFDR-LTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SSC--CCCCCTTTTTTCTTCCEEECCS-SCCSCC-CTTTTTT-CTTCCEEECCSSCBCC
T ss_pred CCC--ccccCHHHhhCCcccCEEECcC-CcceEe-CHHHhcC-CcccCEEEecCCCeec
Confidence 775 3333333456667777777776 566666 4 3455 6777777777777654
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.14 E-value=2e-10 Score=95.57 Aligned_cols=99 Identities=19% Similarity=0.204 Sum_probs=78.0
Q ss_pred eeEEEcCCCCCCCCcccccCcccccEEecCCCCCccc-cccccCCCCCcEEEcc-cCCccccchh-hccCccCcEEEeeC
Q 037494 174 LRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCL-PLLICTLLNLETLEMP-AGYIDHSPEG-IWMMQKLMHLNFDS 250 (394)
Q Consensus 174 L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~-~~~l~~lp~~-i~~l~~L~~L~l~~ 250 (394)
.++++++++.++.+|..+. .+|++|++++|.++.+ |..++++++|++|+++ | .+..+|.. +..+++|++|+++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~- 86 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLN- 86 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECC-
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECC-
Confidence 4678888888888887664 7888888888888877 4557888888888888 7 78888765 4688888888888
Q ss_pred CCCCCCCCCC-CCCCCcCceeCccccC
Q 037494 251 ITLPAPPKNY-SSSLKNLIFISALHPS 276 (394)
Q Consensus 251 ~~~~~~~p~~-l~~l~~L~~L~~~~~~ 276 (394)
+|.+..+|+. ++.+++|+.|++.++.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 8887777764 6777777777777665
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.12 E-value=6.6e-11 Score=109.38 Aligned_cols=84 Identities=14% Similarity=0.100 Sum_probs=64.7
Q ss_pred CCCCCeEEEeecCCccccchh-hhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCce-EEEEecccCCCCCcccccCCC
Q 037494 286 LPTVQTLRISGDLSHYHSGVS-KSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLI-QLSLSNTELMEDPMPMLERLP 362 (394)
Q Consensus 286 l~~L~~L~l~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~-~L~L~~~~l~~~~~~~l~~l~ 362 (394)
+++|+.+++.++. ...++ ..|..+++|+.+++.+ +++.+.+ .|.. +++|+ .+++.+ .++......+.+++
T Consensus 225 ~~~L~~l~L~~n~---i~~I~~~aF~~~~~L~~l~l~~--ni~~I~~~aF~~-~~~L~~~l~l~~-~l~~I~~~aF~~c~ 297 (329)
T 3sb4_A 225 MPNLVSLDISKTN---ATTIPDFTFAQKKYLLKIKLPH--NLKTIGQRVFSN-CGRLAGTLELPA-SVTAIEFGAFMGCD 297 (329)
T ss_dssp CTTCCEEECTTBC---CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTT-CTTCCEEEEECT-TCCEECTTTTTTCT
T ss_pred cCCCeEEECCCCC---cceecHhhhhCCCCCCEEECCc--ccceehHHHhhC-ChhccEEEEEcc-cceEEchhhhhCCc
Confidence 6789999998774 33444 4688889999999975 4888833 7777 89999 999988 66666667788999
Q ss_pred CCCeEEEecccccC
Q 037494 363 RLQVMKLKRNSYFG 376 (394)
Q Consensus 363 ~L~~L~l~~n~~~~ 376 (394)
+|+.++++.|.+..
T Consensus 298 ~L~~l~l~~n~i~~ 311 (329)
T 3sb4_A 298 NLRYVLATGDKITT 311 (329)
T ss_dssp TEEEEEECSSCCCE
T ss_pred cCCEEEeCCCccCc
Confidence 99999997766543
No 139
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.12 E-value=4.1e-11 Score=129.81 Aligned_cols=91 Identities=24% Similarity=0.343 Sum_probs=80.6
Q ss_pred chhHHHHHHhcccCCCchhhHHHhccccccCCCceechHHHHHHHHhcCCCCCChHHHHHHHHHHHHhcCceeeeecCCC
Q 037494 6 EAILTVWRQIYSVMELPFHLKVYCIYLCVFCPSIEISTRQLCQLWIAEGFIPYNSEETAEYYLKELIHRGFIQVSKRRAG 85 (394)
Q Consensus 6 ~~i~~~lk~~~SY~~L~~~~k~cfl~~~~Fp~~~~i~~~~Li~~wia~gfi~~~~~~~~~~~l~~L~~~~ll~~~~~~~~ 85 (394)
+.+..+++ +||+.||.++|.||+|||+||+++.|+++.++.+|.++ ++.++.++++|++++|++... +
T Consensus 362 ~~~~~~l~--~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-------~~~~~~~l~~L~~~sl~~~~~---~ 429 (1249)
T 3sfz_A 362 EALDEAMS--ISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-------TEEVEDILQEFVNKSLLFCNR---N 429 (1249)
T ss_dssp HHHHHHHH--HHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSCEEEE---S
T ss_pred HHHHHHHH--HHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-------HHHHHHHHHHHHhccceEEec---C
Confidence 35889999 99999999999999999999999999999999999876 355899999999999999765 3
Q ss_pred CcEeEEEcCHHHHHHHHHHhccc
Q 037494 86 GTIKACYVPSLVYYSLLLVAEKT 108 (394)
Q Consensus 86 g~~~~~~mhdli~~l~~~~~~~~ 108 (394)
|+..+++|||+++++++..+.++
T Consensus 430 ~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 430 GKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp SSSEEEECCHHHHHHHHHHTGGG
T ss_pred CCceEEEecHHHHHHHHhhhhHH
Confidence 44467999999999999887655
No 140
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.10 E-value=3.6e-11 Score=123.20 Aligned_cols=85 Identities=18% Similarity=0.172 Sum_probs=74.6
Q ss_pred CchhHHHHHHhcccCCCchhh-HHHhccccccCCCceechHHHHHHHHhcCCCCCChHHHHHHHHHHHHhcCceeeeecC
Q 037494 5 GEAILTVWRQIYSVMELPFHL-KVYCIYLCVFCPSIEISTRQLCQLWIAEGFIPYNSEETAEYYLKELIHRGFIQVSKRR 83 (394)
Q Consensus 5 ~~~i~~~lk~~~SY~~L~~~~-k~cfl~~~~Fp~~~~i~~~~Li~~wia~gfi~~~~~~~~~~~l~~L~~~~ll~~~~~~ 83 (394)
++.|..+|+ +||+.||.++ |+||+|||+||+++.|+++.++.+|+++| ++.++.++++|+++||++...
T Consensus 352 ~~~I~aaLe--lSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG------eedAe~~L~eLvdRSLLq~d~-- 421 (1221)
T 1vt4_I 352 CDKLTTIIE--SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI------KSDVMVVVNKLHKYSLVEKQP-- 421 (1221)
T ss_dssp CHHHHHHHH--HHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC------SHHHHHHHHHHHTSSSSSBCS--
T ss_pred hhHHHHHHH--HHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC------HHHHHHHHHHHHhhCCEEEeC--
Confidence 457899999 9999999999 99999999999999999999999999987 245889999999999998842
Q ss_pred CCCcEeEEEcCHHHHHHHH
Q 037494 84 AGGTIKACYVPSLVYYSLL 102 (394)
Q Consensus 84 ~~g~~~~~~mhdli~~l~~ 102 (394)
...+++|||++++++.
T Consensus 422 ---~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 422 ---KESTISIPSIYLELKV 437 (1221)
T ss_dssp ---SSSEEBCCCHHHHHHH
T ss_pred ---CCCEEEehHHHHHHhc
Confidence 2256999999998663
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.01 E-value=6.5e-10 Score=92.76 Aligned_cols=106 Identities=14% Similarity=0.080 Sum_probs=84.3
Q ss_pred cEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCC-cccccCcccccEEecCCCCCccccccc-cCCCCCcEEE
Q 037494 147 QSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQF-PPGLENLFLLKYLQLNIPTLKCLPLLI-CTLLNLETLE 224 (394)
Q Consensus 147 r~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~~lp~~l-~~l~~L~~L~ 224 (394)
+.+.+.++... .+|.- -.++|++|++++|.++.+ |..++.+++|++|++++|.++.+|..+ .++++|++|+
T Consensus 15 ~~l~~~~n~l~-----~iP~~--~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~ 87 (174)
T 2r9u_A 15 TLVNCQNIRLA-----SVPAG--IPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLD 87 (174)
T ss_dssp SEEECCSSCCS-----SCCSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cEEEeCCCCCC-----ccCCC--cCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEE
Confidence 45666665554 33321 137899999999999977 567899999999999999999998764 7899999999
Q ss_pred cc-cCCccccchh-hccCccCcEEEeeCCCCCCCCCCCC
Q 037494 225 MP-AGYIDHSPEG-IWMMQKLMHLNFDSITLPAPPKNYS 261 (394)
Q Consensus 225 l~-~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~l 261 (394)
++ | .+..+|.. +..+++|++|+++ +|.....+..+
T Consensus 88 L~~N-~l~~l~~~~~~~l~~L~~L~L~-~N~~~c~~~~~ 124 (174)
T 2r9u_A 88 LNDN-HLKSIPRGAFDNLKSLTHIYLY-NNPWDCECRDI 124 (174)
T ss_dssp CCSS-CCCCCCTTTTTTCTTCSEEECC-SSCBCTTBGGG
T ss_pred CCCC-ccceeCHHHhccccCCCEEEeC-CCCcccccccH
Confidence 99 8 89899875 8889999999999 88766555433
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.99 E-value=2.4e-10 Score=105.58 Aligned_cols=86 Identities=15% Similarity=0.119 Sum_probs=49.3
Q ss_pred CCCCccEEEEecCCCccchhcchhHHhcc-CCceeEEEcCCCCCCC--------------------Cc-ccccC------
Q 037494 142 SDMYLQSFLNHSSESDHLALIDCENFCEN-FKYLRVLNWGSAVLDQ--------------------FP-PGLEN------ 193 (394)
Q Consensus 142 ~~~~lr~L~l~~~~~~~~~~~~l~~~~~~-l~~L~~L~l~~~~~~~--------------------lp-~~i~~------ 193 (394)
...+++.|.+.+.-. ..++..+ .. +++|++|+|++|.+.. +| ..+.+
T Consensus 23 ~~~~l~~L~l~g~i~----~~~~~~l-~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 23 EANSITHLTLTGKLN----AEDFRHL-RDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVT 97 (329)
T ss_dssp HHHHCSEEEEEEEEC----HHHHHHH-HHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEE
T ss_pred hhCceeEEEEecccc----HHHHHHH-HHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccc
Confidence 456788888886422 2244445 44 8899999999999771 11 22333
Q ss_pred --cccccEEecCCCCCcccccc-ccCCCCCcEEEcc-cCCccccc
Q 037494 194 --LFLLKYLQLNIPTLKCLPLL-ICTLLNLETLEMP-AGYIDHSP 234 (394)
Q Consensus 194 --l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~-~~~l~~lp 234 (394)
+.+|+.+.+.. .++.+++. +..+.+|+.++++ + .+..++
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~ 140 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKK-TAPNLL 140 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCS-SCCEEC
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCC-Cccccc
Confidence 55555555555 45544432 4455555555555 4 444444
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.98 E-value=1.4e-08 Score=96.11 Aligned_cols=214 Identities=9% Similarity=0.053 Sum_probs=141.2
Q ss_pred CccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCCc-ccccCcccccEEecCCCCCccccccccCCCCCcE
Q 037494 145 YLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQFP-PGLENLFLLKYLQLNIPTLKCLPLLICTLLNLET 222 (394)
Q Consensus 145 ~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~ 222 (394)
+|+++.+..+ .. .+ ...|.++ .|+.+.+.. .++.++ .++.++.+|+.+++.+|.++.+|.......+|+.
T Consensus 136 ~L~~i~l~~~-i~-----~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~ 207 (401)
T 4fdw_A 136 QIAKVVLNEG-LK-----SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEE 207 (401)
T ss_dssp CCSEEECCTT-CC-----EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSE
T ss_pred CccEEEeCCC-cc-----EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCE
Confidence 5777776544 22 22 2222553 688888875 566554 6677888899999988888888877666788888
Q ss_pred EEcccCCccccch-hhccCccCcEEEeeCCCCCCCCCCC-CCCCCcCceeCccccC-CCcchhcCCCCCCCeEEEeecCC
Q 037494 223 LEMPAGYIDHSPE-GIWMMQKLMHLNFDSITLPAPPKNY-SSSLKNLIFISALHPS-SCTPDILSRLPTVQTLRISGDLS 299 (394)
Q Consensus 223 L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~ 299 (394)
+.+.. .+..++. .+..+++|+.+.+. .+ +..++.. +.+ .+|+.+.+...- .-....+..+++|+.+.+.++..
T Consensus 208 l~lp~-~l~~I~~~aF~~~~~L~~l~l~-~~-l~~I~~~aF~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~ 283 (401)
T 4fdw_A 208 VLLPV-TLKEIGSQAFLKTSQLKTIEIP-EN-VSTIGQEAFRE-SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTF 283 (401)
T ss_dssp EECCT-TCCEECTTTTTTCTTCCCEECC-TT-CCEECTTTTTT-CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCC
T ss_pred EEeCC-chheehhhHhhCCCCCCEEecC-CC-ccCcccccccc-CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccc
Confidence 88872 3666664 46678888888887 53 3333332 444 677777774322 22234577788899888877641
Q ss_pred c--cc-cchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEeccccc
Q 037494 300 H--YH-SGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYF 375 (394)
Q Consensus 300 ~--~~-~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~ 375 (394)
. .. .--...+..+++|+.+.+. ++++.+.. .|.. +++|+.+.|..+ ++......+.++ +|+.+.+++|...
T Consensus 284 ~~~~~~~I~~~aF~~c~~L~~l~l~--~~i~~I~~~aF~~-c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 284 NDDPEAMIHPYCLEGCPKLARFEIP--ESIRILGQGLLGG-NRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp CCCTTCEECTTTTTTCTTCCEECCC--TTCCEECTTTTTT-CCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred cCCcccEECHHHhhCCccCCeEEeC--CceEEEhhhhhcC-CCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 0 11 1223567788888888886 35777723 6777 888888888654 444455667788 8888888776543
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.92 E-value=4.7e-09 Score=87.15 Aligned_cols=99 Identities=13% Similarity=0.060 Sum_probs=84.9
Q ss_pred cccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccc-hhhccCccCcEEEeeCCCCCCCCCCC-CCCCCcCceeCc
Q 037494 196 LLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSP-EGIWMMQKLMHLNFDSITLPAPPKNY-SSSLKNLIFISA 272 (394)
Q Consensus 196 ~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~~ 272 (394)
..+.++++++.++.+|..+. .+|++|+++ | .+..++ ..+..+++|++|+++ +|.+..+|+. ++.+++|++|++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls-~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLD-NNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECC-SSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCC-cCCccChhhhcCcccCCEEECC-CCCcCccChhhccCCCCCCEEEC
Confidence 45789999999999998774 899999999 8 888884 568899999999999 9998888876 589999999999
Q ss_pred cccC-CCcch-hcCCCCCCCeEEEeecC
Q 037494 273 LHPS-SCTPD-ILSRLPTVQTLRISGDL 298 (394)
Q Consensus 273 ~~~~-~~~~~-~l~~l~~L~~L~l~~~~ 298 (394)
.++. ...+. .+..+++|+.|++++|.
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 9888 44443 58889999999999986
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.91 E-value=2.8e-08 Score=94.15 Aligned_cols=232 Identities=11% Similarity=0.097 Sum_probs=165.0
Q ss_pred ceEEEEEEeCCcchhhcc--CCCCCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCCcccccCcccccE
Q 037494 123 TVKRCFILEDLIEFISLE--QSDMYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKY 199 (394)
Q Consensus 123 ~~r~L~l~~~~~~~~~~~--~~~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~ 199 (394)
+++.+.+. +....+... .. .+|+++.+.. ... .+ ...|..+++|+.++++++.++.++.......+|+.
T Consensus 136 ~L~~i~l~-~~i~~I~~~aF~~-~~L~~i~lp~-~l~-----~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~ 207 (401)
T 4fdw_A 136 QIAKVVLN-EGLKSIGDMAFFN-STVQEIVFPS-TLE-----QLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEE 207 (401)
T ss_dssp CCSEEECC-TTCCEECTTTTTT-CCCCEEECCT-TCC-----EECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSE
T ss_pred CccEEEeC-CCccEECHHhcCC-CCceEEEeCC-Ccc-----EehHHHhhCcccCCeeecCCCcceEechhhEeecccCE
Confidence 45566655 444444333 23 4688887765 222 33 34459999999999999999988855555789999
Q ss_pred EecCCCCCccccc-cccCCCCCcEEEcccCCccccchhhccCccCcEEEeeCCCCCCCCC-CCCCCCCcCceeCccccC-
Q 037494 200 LQLNIPTLKCLPL-LICTLLNLETLEMPAGYIDHSPEGIWMMQKLMHLNFDSITLPAPPK-NYSSSLKNLIFISALHPS- 276 (394)
Q Consensus 200 L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~~~~~~- 276 (394)
+.+..+ ++.++. .+.++.+|+.+++.. .+..++.....-.+|+.+.+. .+ +..++ ..+..+++|+.+.+..+.
T Consensus 208 l~lp~~-l~~I~~~aF~~~~~L~~l~l~~-~l~~I~~~aF~~~~L~~i~lp-~~-i~~I~~~aF~~c~~L~~l~l~~~~~ 283 (401)
T 4fdw_A 208 VLLPVT-LKEIGSQAFLKTSQLKTIEIPE-NVSTIGQEAFRESGITTVKLP-NG-VTNIASRAFYYCPELAEVTTYGSTF 283 (401)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCCEECCT-TCCEECTTTTTTCCCSEEEEE-TT-CCEECTTTTTTCTTCCEEEEESSCC
T ss_pred EEeCCc-hheehhhHhhCCCCCCEEecCC-CccCccccccccCCccEEEeC-CC-ccEEChhHhhCCCCCCEEEeCCccc
Confidence 999854 777664 467889999999983 367777654444899999997 54 34443 457889999999887654
Q ss_pred C------CcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEeccc
Q 037494 277 S------CTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTE 349 (394)
Q Consensus 277 ~------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~ 349 (394)
. -....+..+++|+.+.+... ...--...+..+++|+.+.|. .++..+.+ .|.. + +|+.+++.+|.
T Consensus 284 ~~~~~~~I~~~aF~~c~~L~~l~l~~~---i~~I~~~aF~~c~~L~~l~lp--~~l~~I~~~aF~~-~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 284 NDDPEAMIHPYCLEGCPKLARFEIPES---IRILGQGLLGGNRKVTQLTIP--ANVTQINFSAFNN-T-GIKEVKVEGTT 356 (401)
T ss_dssp CCCTTCEECTTTTTTCTTCCEECCCTT---CCEECTTTTTTCCSCCEEEEC--TTCCEECTTSSSS-S-CCCEEEECCSS
T ss_pred cCCcccEECHHHhhCCccCCeEEeCCc---eEEEhhhhhcCCCCccEEEEC--ccccEEcHHhCCC-C-CCCEEEEcCCC
Confidence 1 23356778899999988742 222223567888999999996 46888844 7888 8 99999999998
Q ss_pred CCCCCcccccCCC-CCCeEEEeccc
Q 037494 350 LMEDPMPMLERLP-RLQVMKLKRNS 373 (394)
Q Consensus 350 l~~~~~~~l~~l~-~L~~L~l~~n~ 373 (394)
........+.+++ +++.|.+-.+.
T Consensus 357 ~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 357 PPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred CcccccccccCCCCCccEEEeCHHH
Confidence 7665556677775 78999996554
No 146
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.83 E-value=3.1e-09 Score=106.16 Aligned_cols=88 Identities=25% Similarity=0.347 Sum_probs=76.4
Q ss_pred chhHHHHHHhcccCCCchhhHHHhccccccCCCceechHHHHHHHHhcCCCCCChHHHHHHHHHHHHhcCceeeeecCCC
Q 037494 6 EAILTVWRQIYSVMELPFHLKVYCIYLCVFCPSIEISTRQLCQLWIAEGFIPYNSEETAEYYLKELIHRGFIQVSKRRAG 85 (394)
Q Consensus 6 ~~i~~~lk~~~SY~~L~~~~k~cfl~~~~Fp~~~~i~~~~Li~~wia~gfi~~~~~~~~~~~l~~L~~~~ll~~~~~~~~ 85 (394)
+.|..+++ .||+.||.+.|.||++||+||+|+.|+.+.++.+|.++ .+.++.++++|++++|++....
T Consensus 362 ~~l~~~l~--~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-------~~~~~~~l~~L~~~~Ll~~~~~--- 429 (591)
T 1z6t_A 362 EALDEAMS--ISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-------TEEVEDILQEFVNKSLLFCDRN--- 429 (591)
T ss_dssp HHHHHHHH--HHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSSEEEEE---
T ss_pred HHHHHHHH--HHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-------HHHHHHHHHHHHhCcCeEEecC---
Confidence 46888999 99999999999999999999999999999999999764 2347889999999999987553
Q ss_pred CcEeEEEcCHHHHHHHHHHh
Q 037494 86 GTIKACYVPSLVYYSLLLVA 105 (394)
Q Consensus 86 g~~~~~~mhdli~~l~~~~~ 105 (394)
|...+++||++++++++...
T Consensus 430 ~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 430 GKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp TTEEEEECCHHHHHHHHHHT
T ss_pred CCccEEEEcHHHHHHHHhhh
Confidence 34467999999999998773
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.80 E-value=1.4e-08 Score=94.37 Aligned_cols=95 Identities=15% Similarity=0.049 Sum_probs=42.0
Q ss_pred EcCCC-CCCCCcccccCcccccEEecCC-CCCcccc-ccccCCCCCcEEEcc-cCCccccch-hhccCccCcEEEeeCCC
Q 037494 178 NWGSA-VLDQFPPGLENLFLLKYLQLNI-PTLKCLP-LLICTLLNLETLEMP-AGYIDHSPE-GIWMMQKLMHLNFDSIT 252 (394)
Q Consensus 178 ~l~~~-~~~~lp~~i~~l~~L~~L~l~~-~~l~~lp-~~l~~l~~L~~L~l~-~~~l~~lp~-~i~~l~~L~~L~l~~~~ 252 (394)
+.+++ .++.+|. +..+++|+.|+|++ |.+..+| ..++++.+|++|+|+ | .+..+|+ .++.+++|++|+++ +|
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~-~N 90 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLS-FN 90 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECC-SS
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCC-CC
Confidence 44444 4444444 44444455555543 4444444 234444455555554 4 4444432 23444455555554 44
Q ss_pred CCCCCCCCCCCCCcCceeCcccc
Q 037494 253 LPAPPKNYSSSLKNLIFISALHP 275 (394)
Q Consensus 253 ~~~~~p~~l~~l~~L~~L~~~~~ 275 (394)
.+..+|+.+.....|+.|.+.++
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSS
T ss_pred ccceeCHHHcccCCceEEEeeCC
Confidence 44444433222222444444443
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.65 E-value=4.9e-08 Score=90.62 Aligned_cols=89 Identities=13% Similarity=0.033 Sum_probs=67.8
Q ss_pred chhHHhccCCceeEEEcCC-CCCCCCc-ccccCcccccEEecCCCCCccccc-cccCCCCCcEEEcc-cCCccccchhhc
Q 037494 163 DCENFCENFKYLRVLNWGS-AVLDQFP-PGLENLFLLKYLQLNIPTLKCLPL-LICTLLNLETLEMP-AGYIDHSPEGIW 238 (394)
Q Consensus 163 ~l~~~~~~l~~L~~L~l~~-~~~~~lp-~~i~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~-~~~l~~lp~~i~ 238 (394)
.+|. +..+++|++|+|++ |.+..+| ..++.+.+|++|+|++|.+..+|+ .++++++|++|+|+ | .+..+|..+.
T Consensus 23 ~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~ 100 (347)
T 2ifg_A 23 SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTV 100 (347)
T ss_dssp TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTT
T ss_pred ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHc
Confidence 3455 48888888888885 8888776 568888888888888888887665 46788888888888 7 7888887655
Q ss_pred cCccCcEEEeeCCCCC
Q 037494 239 MMQKLMHLNFDSITLP 254 (394)
Q Consensus 239 ~l~~L~~L~l~~~~~~ 254 (394)
...+|+.|++. +|.+
T Consensus 101 ~~~~L~~l~l~-~N~~ 115 (347)
T 2ifg_A 101 QGLSLQELVLS-GNPL 115 (347)
T ss_dssp CSCCCCEEECC-SSCC
T ss_pred ccCCceEEEee-CCCc
Confidence 54458888888 7663
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.64 E-value=4.4e-09 Score=98.65 Aligned_cols=109 Identities=17% Similarity=0.066 Sum_probs=61.1
Q ss_pred CCCccEEEEecCCCccchhcchhHHhc-cCCceeEEEcCCCCCCC--CcccccCcccccEEecCCCCCcccc-----ccc
Q 037494 143 DMYLQSFLNHSSESDHLALIDCENFCE-NFKYLRVLNWGSAVLDQ--FPPGLENLFLLKYLQLNIPTLKCLP-----LLI 214 (394)
Q Consensus 143 ~~~lr~L~l~~~~~~~~~~~~l~~~~~-~l~~L~~L~l~~~~~~~--lp~~i~~l~~L~~L~l~~~~l~~lp-----~~l 214 (394)
.+.++.|.+.++.........+...+. ..++|++|++++|.+.. +..-...+.+|+.|++++|.+.... ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 345777777777665211112222223 23577777777777652 1122224556777777777765321 222
Q ss_pred -cCCCCCcEEEcc-cCCccc-----cchhhccCccCcEEEeeCCCC
Q 037494 215 -CTLLNLETLEMP-AGYIDH-----SPEGIWMMQKLMHLNFDSITL 253 (394)
Q Consensus 215 -~~l~~L~~L~l~-~~~l~~-----lp~~i~~l~~L~~L~l~~~~~ 253 (394)
...++|++|+++ | .+.. ++..+...++|++|+++ +|.
T Consensus 151 ~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls-~N~ 194 (372)
T 3un9_A 151 LHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLL-HTG 194 (372)
T ss_dssp HSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECT-TSS
T ss_pred HhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCC-CCC
Confidence 235677777777 6 5543 34445666777777777 665
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.53 E-value=3.4e-09 Score=99.48 Aligned_cols=82 Identities=16% Similarity=0.128 Sum_probs=51.2
Q ss_pred CCceeEEEcCCCCCCCC-----ccccc-CcccccEEecCCCCCcc--ccccccCCCCCcEEEcc-cCCccccch-h----
Q 037494 171 FKYLRVLNWGSAVLDQF-----PPGLE-NLFLLKYLQLNIPTLKC--LPLLICTLLNLETLEMP-AGYIDHSPE-G---- 236 (394)
Q Consensus 171 l~~L~~L~l~~~~~~~l-----p~~i~-~l~~L~~L~l~~~~l~~--lp~~l~~l~~L~~L~l~-~~~l~~lp~-~---- 236 (394)
++.|+.|++++|.+... ...+. ...+|+.|+|++|.+.. +..-...+.+|++|+++ | .+..... .
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHH
Confidence 46788999999988732 22222 22688999999888753 21112235578888888 7 6644321 1
Q ss_pred h-ccCccCcEEEeeCCCCC
Q 037494 237 I-WMMQKLMHLNFDSITLP 254 (394)
Q Consensus 237 i-~~l~~L~~L~l~~~~~~ 254 (394)
+ ...++|++|+++ +|.+
T Consensus 150 L~~~~~~L~~L~Ls-~n~l 167 (372)
T 3un9_A 150 LLHDQCQITTLRLS-NNPL 167 (372)
T ss_dssp HHSTTCCCCEEECC-SSCC
T ss_pred HHhcCCccceeeCC-CCCC
Confidence 2 235678888887 6653
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.44 E-value=3e-08 Score=92.43 Aligned_cols=210 Identities=16% Similarity=0.160 Sum_probs=111.7
Q ss_pred CCCCCccEEEEecCCCccchh-cchhHH---hccCCceeEEEcCCCCCC----------CCcccccCcccccEEecCCCC
Q 037494 141 QSDMYLQSFLNHSSESDHLAL-IDCENF---CENFKYLRVLNWGSAVLD----------QFPPGLENLFLLKYLQLNIPT 206 (394)
Q Consensus 141 ~~~~~lr~L~l~~~~~~~~~~-~~l~~~---~~~l~~L~~L~l~~~~~~----------~lp~~i~~l~~L~~L~l~~~~ 206 (394)
.....++.|.+-......-.. ..++.+ ..++++|+.|.+.+...+ .+...+..+++|+.|.++++.
T Consensus 104 ~~~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~ 183 (362)
T 2ra8_A 104 KKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN 183 (362)
T ss_dssp TTGGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCB
T ss_pred CCchhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCC
Confidence 455567777766443210000 011221 256788888888654322 233444566778888887763
Q ss_pred CccccccccCCCCCcEEEcc-cCCcccc-chhhc--cCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccCCCcchh
Q 037494 207 LKCLPLLICTLLNLETLEMP-AGYIDHS-PEGIW--MMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPSSCTPDI 282 (394)
Q Consensus 207 l~~lp~~l~~l~~L~~L~l~-~~~l~~l-p~~i~--~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~ 282 (394)
-..+|. +. +++|++|++. | .+..- ...+. .+++|++|+++ .+... +.+-..+..+..+ . .
T Consensus 184 ~l~l~~-~~-~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~-~~~~~--~~~~~~~~~l~~~---------l-~ 247 (362)
T 2ra8_A 184 NLSIGK-KP-RPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLY-VGVED--YGFDGDMNVFRPL---------F-S 247 (362)
T ss_dssp TCBCCS-CB-CTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEE-CBCGG--GTCCSCGGGTGGG---------S-C
T ss_pred Cceecc-cc-CCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEe-ccccc--cccchhHHHHHHH---------H-h
Confidence 223443 33 6778888887 6 43221 11232 57778887775 32100 0000001111100 0 0
Q ss_pred cCCCCCCCeEEEeecCCccccchhhhh---cCCCCCcEEEecCCCCCCc-----cCC-CCCCCCCCceEEEEecccCCCC
Q 037494 283 LSRLPTVQTLRISGDLSHYHSGVSKSL---CELHKLECLKLVNGSKLSR-----MVL-SEYQFPPSLIQLSLSNTELMED 353 (394)
Q Consensus 283 l~~l~~L~~L~l~~~~~~~~~~~~~~l---~~~~~L~~L~l~~~~~L~~-----L~p-~~~~~l~~L~~L~L~~~~l~~~ 353 (394)
.+.+++|+.|.+.+|. .....+..+ ..+++|+.|+|+. +.+.. + + .+.. +++|+.|+|+.|.+...
T Consensus 248 ~~~~p~Lr~L~L~~~~--i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L-~~~L~~-l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 248 KDRFPNLKWLGIVDAE--EQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLL-LDHVDK-IKHLKFINMKYNYLSDE 322 (362)
T ss_dssp TTTCTTCCEEEEESCT--THHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHH-HTTHHH-HTTCSEEECCSBBCCHH
T ss_pred cCCCCCcCEEeCCCCC--CchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHH-Hhhccc-CCcceEEECCCCcCCHH
Confidence 1346788888888876 433333222 3467888888876 44443 2 2 2334 68899999998887554
Q ss_pred CcccccC-CCCCCeEEEeccc
Q 037494 354 PMPMLER-LPRLQVMKLKRNS 373 (394)
Q Consensus 354 ~~~~l~~-l~~L~~L~l~~n~ 373 (394)
....+.. + ...++++.+.
T Consensus 323 ~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 323 MKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHHc--CCEEEecCCc
Confidence 4444443 3 4567776654
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.23 E-value=1.2e-06 Score=81.55 Aligned_cols=110 Identities=14% Similarity=-0.022 Sum_probs=69.0
Q ss_pred CCCCCccEEEEecCCCcc-----chhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCcc-ccccc
Q 037494 141 QSDMYLQSFLNHSSESDH-----LALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKC-LPLLI 214 (394)
Q Consensus 141 ~~~~~lr~L~l~~~~~~~-----~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-lp~~l 214 (394)
..+++||+|.+.+..... .....+..++..+++|+.|.++++.-..++. +. +.+|+.|++..+.+.. ....+
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHH
Confidence 457899999986543211 0012356777899999999999884234544 43 8899999999887652 11233
Q ss_pred c--CCCCCcEEEcc-cCC-------ccccchhh--ccCccCcEEEeeCCCC
Q 037494 215 C--TLLNLETLEMP-AGY-------IDHSPEGI--WMMQKLMHLNFDSITL 253 (394)
Q Consensus 215 ~--~l~~L~~L~l~-~~~-------l~~lp~~i--~~l~~L~~L~l~~~~~ 253 (394)
+ .+++|++|+|+ +.. +..+...+ ..+++|++|++. +|.
T Consensus 214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~-~~~ 263 (362)
T 2ra8_A 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIV-DAE 263 (362)
T ss_dssp HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEE-SCT
T ss_pred HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCC-CCC
Confidence 3 78999999986 311 11111111 246677777776 544
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.00 E-value=6.1e-06 Score=69.15 Aligned_cols=111 Identities=13% Similarity=0.091 Sum_probs=66.4
Q ss_pred CCCCCccEEEEecC-CCccchhcchhHHhccCCceeEEEcCCCCCCC-----CcccccCcccccEEecCCCCCcc-----
Q 037494 141 QSDMYLQSFLNHSS-ESDHLALIDCENFCENFKYLRVLNWGSAVLDQ-----FPPGLENLFLLKYLQLNIPTLKC----- 209 (394)
Q Consensus 141 ~~~~~lr~L~l~~~-~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~-----lp~~i~~l~~L~~L~l~~~~l~~----- 209 (394)
...+.|++|.+.++ ....-....+...+...+.|++|++++|.+.. +...+...+.|++|+|++|.+..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 45667777777776 55421112233333666777777777777652 33444555677777777777653
Q ss_pred ccccccCCCCCcEEEc--c-cCCccc-----cchhhccCccCcEEEeeCCCC
Q 037494 210 LPLLICTLLNLETLEM--P-AGYIDH-----SPEGIWMMQKLMHLNFDSITL 253 (394)
Q Consensus 210 lp~~l~~l~~L~~L~l--~-~~~l~~-----lp~~i~~l~~L~~L~l~~~~~ 253 (394)
+...+...++|++|++ + | .+.. +...+...++|++|+++ +|.
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~-~n~ 162 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYH-FTQ 162 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECC-CSS
T ss_pred HHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEecc-CCC
Confidence 4455666667777777 5 5 4432 33345555677777777 554
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.96 E-value=0.00033 Score=65.89 Aligned_cols=83 Identities=8% Similarity=0.175 Sum_probs=52.9
Q ss_pred cCCCCCCCeEEEeecCCccccchh-hhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccC
Q 037494 283 LSRLPTVQTLRISGDLSHYHSGVS-KSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLER 360 (394)
Q Consensus 283 l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~ 360 (394)
+..++.|+.+.+.. ....++ ..+..+.+|+.+.|. .+++.+.. .|.. +.+|+.+.|..+ ++......+.+
T Consensus 284 F~~c~~L~~i~l~~----~i~~I~~~aF~~c~~L~~i~lp--~~v~~I~~~aF~~-C~~L~~i~ip~s-v~~I~~~aF~~ 355 (394)
T 4gt6_A 284 FMNCPALQDIEFSS----RITELPESVFAGCISLKSIDIP--EGITQILDDAFAG-CEQLERIAIPSS-VTKIPESAFSN 355 (394)
T ss_dssp TTTCTTCCEEECCT----TCCEECTTTTTTCTTCCEEECC--TTCCEECTTTTTT-CTTCCEEEECTT-CCBCCGGGGTT
T ss_pred cccccccccccCCC----cccccCceeecCCCCcCEEEeC--CcccEehHhHhhC-CCCCCEEEECcc-cCEEhHhHhhC
Confidence 33445555555532 122222 356667778877775 34666623 6777 889999998654 44555567888
Q ss_pred CCCCCeEEEeccc
Q 037494 361 LPRLQVMKLKRNS 373 (394)
Q Consensus 361 l~~L~~L~l~~n~ 373 (394)
+++|+.+.+.++.
T Consensus 356 C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 356 CTALNNIEYSGSR 368 (394)
T ss_dssp CTTCCEEEESSCH
T ss_pred CCCCCEEEECCce
Confidence 9999999986653
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.85 E-value=3.9e-06 Score=70.33 Aligned_cols=116 Identities=12% Similarity=0.061 Sum_probs=75.5
Q ss_pred hhHHhccCCceeEEEcCCC-CCC-----CCcccccCcccccEEecCCCCCcc-----ccccccCCCCCcEEEcc-cCCcc
Q 037494 164 CENFCENFKYLRVLNWGSA-VLD-----QFPPGLENLFLLKYLQLNIPTLKC-----LPLLICTLLNLETLEMP-AGYID 231 (394)
Q Consensus 164 l~~~~~~l~~L~~L~l~~~-~~~-----~lp~~i~~l~~L~~L~l~~~~l~~-----lp~~l~~l~~L~~L~l~-~~~l~ 231 (394)
+..++...+.|++|++++| .+. .+...+...++|++|+|++|.+.. +...+...++|++|+|+ | .+.
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~ 106 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FIS 106 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCC
Confidence 3455588899999999998 776 344566677888999999888762 44455566778888888 7 664
Q ss_pred c-----cchhhccCccCcEEEe--eCCCCCCCCCCCCCCCCcCceeCccccCCCcchhcCCCCCCCeEEEeecC
Q 037494 232 H-----SPEGIWMMQKLMHLNF--DSITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDL 298 (394)
Q Consensus 232 ~-----lp~~i~~l~~L~~L~l--~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 298 (394)
. +...+...++|++|++ + +|.+..- +. ......+...+.|+.|++++|.
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~-~N~i~~~--g~---------------~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQ-SQPLGNN--VE---------------MEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCC-SSCCCHH--HH---------------HHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHHHhCCCceEEEecCC-CCCCCHH--HH---------------HHHHHHHHhCCCcCEEeccCCC
Confidence 3 4455666677777777 4 4432210 00 1123344455677777877775
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.82 E-value=0.0001 Score=69.31 Aligned_cols=82 Identities=10% Similarity=0.068 Sum_probs=56.1
Q ss_pred cCCCCCCCeEEEeecCCccccch-hhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccC
Q 037494 283 LSRLPTVQTLRISGDLSHYHSGV-SKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLER 360 (394)
Q Consensus 283 l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~ 360 (394)
+..+.+|+.+.+..+ ...+ ..++..+.+|+.++|. .+++.+.. .|.. +.+|+.+++..+ ++.....++.+
T Consensus 293 F~~~~~L~~i~l~~~----i~~I~~~aF~~c~~L~~i~lp--~~v~~I~~~aF~~-c~~L~~i~lp~~-l~~I~~~aF~~ 364 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS----VKFIGEEAFESCTSLVSIDLP--YLVEEIGKRSFRG-CTSLSNINFPLS-LRKIGANAFQG 364 (394)
T ss_dssp TTTCTTCCEEEECTT----CCEECTTTTTTCTTCCEECCC--TTCCEECTTTTTT-CTTCCEECCCTT-CCEECTTTBTT
T ss_pred ccccccccccccccc----cceechhhhcCCCCCCEEEeC--CcccEEhHHhccC-CCCCCEEEECcc-ccEehHHHhhC
Confidence 445667777766432 2222 2456777888888885 35777733 7777 899999999765 44455567889
Q ss_pred CCCCCeEEEecc
Q 037494 361 LPRLQVMKLKRN 372 (394)
Q Consensus 361 l~~L~~L~l~~n 372 (394)
+++|+.+.+..+
T Consensus 365 C~~L~~i~lp~~ 376 (394)
T 4fs7_A 365 CINLKKVELPKR 376 (394)
T ss_dssp CTTCCEEEEEGG
T ss_pred CCCCCEEEECCC
Confidence 999999999544
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.81 E-value=6.3e-06 Score=67.86 Aligned_cols=33 Identities=12% Similarity=0.296 Sum_probs=15.8
Q ss_pred CceEEEEeccc-CCCCCcccccCCCCCCeEEEec
Q 037494 339 SLIQLSLSNTE-LMEDPMPMLERLPRLQVMKLKR 371 (394)
Q Consensus 339 ~L~~L~L~~~~-l~~~~~~~l~~l~~L~~L~l~~ 371 (394)
+|++|+|++|. ++...+..+.++++|++|+|++
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~ 148 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSD 148 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEES
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCC
Confidence 35555555552 4333344444555555555544
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.71 E-value=2.8e-05 Score=68.79 Aligned_cols=79 Identities=23% Similarity=0.103 Sum_probs=53.4
Q ss_pred ccCCceeEEEcCCCCCCCCc---ccccCcccccEEecCCCCCccccccccCCC--CCcEEEcc-cCCcc-ccc-------
Q 037494 169 ENFKYLRVLNWGSAVLDQFP---PGLENLFLLKYLQLNIPTLKCLPLLICTLL--NLETLEMP-AGYID-HSP------- 234 (394)
Q Consensus 169 ~~l~~L~~L~l~~~~~~~lp---~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~--~L~~L~l~-~~~l~-~lp------- 234 (394)
.++++|++|+|++|.+..++ ..++.+++|+.|+|++|.++.+. .+..+. +|++|+++ | .+. .+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~N-pl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGN-SLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTS-TTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCC-cCccccCcchhHHH
Confidence 56788888888888877543 55567888888888888877662 344444 78888888 6 443 333
Q ss_pred hhhccCccCcEEEee
Q 037494 235 EGIWMMQKLMHLNFD 249 (394)
Q Consensus 235 ~~i~~l~~L~~L~l~ 249 (394)
..+..+++|+.|+-.
T Consensus 245 ~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 245 AIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHCTTCCEESSC
T ss_pred HHHHHCcccCeECCc
Confidence 135667777777643
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.70 E-value=0.0003 Score=66.16 Aligned_cols=59 Identities=14% Similarity=0.066 Sum_probs=37.4
Q ss_pred hcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEec
Q 037494 309 LCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKR 371 (394)
Q Consensus 309 l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~ 371 (394)
+..+.+|+.+.+. ++++.+.. .+.. +.+|+.++|..+ ++.....++.++.+|+.+.+..
T Consensus 293 F~~~~~L~~i~l~--~~i~~I~~~aF~~-c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~ 352 (394)
T 4fs7_A 293 FYGCSSLTEVKLL--DSVKFIGEEAFES-CTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPL 352 (394)
T ss_dssp TTTCTTCCEEEEC--TTCCEECTTTTTT-CTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCT
T ss_pred ccccccccccccc--cccceechhhhcC-CCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECc
Confidence 3344556666554 34555522 6666 888888888654 4444445677888898888843
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.58 E-value=4.2e-05 Score=62.90 Aligned_cols=34 Identities=6% Similarity=0.061 Sum_probs=16.4
Q ss_pred CCCcEEEcc-cCCccccc-hhhccCccCcEEEeeCCCC
Q 037494 218 LNLETLEMP-AGYIDHSP-EGIWMMQKLMHLNFDSITL 253 (394)
Q Consensus 218 ~~L~~L~l~-~~~l~~lp-~~i~~l~~L~~L~l~~~~~ 253 (394)
.+|+.||++ | .+...- ..+..+++|++|+++ +|.
T Consensus 61 ~~L~~LDLs~~-~Itd~GL~~L~~~~~L~~L~L~-~C~ 96 (176)
T 3e4g_A 61 YKIQAIDATDS-CIMSIGFDHMEGLQYVEKIRLC-KCH 96 (176)
T ss_dssp CCEEEEEEESC-CCCGGGGGGGTTCSCCCEEEEE-SCT
T ss_pred ceEeEEeCcCC-CccHHHHHHhcCCCCCCEEEeC-CCC
Confidence 346666666 5 333211 224455555555555 543
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.22 E-value=0.00018 Score=63.52 Aligned_cols=79 Identities=19% Similarity=0.164 Sum_probs=49.9
Q ss_pred cCcccccEEecCCCCCcccc---ccccCCCCCcEEEcc-cCCccccchhhccCc--cCcEEEeeCCCCCC-CCCC-----
Q 037494 192 ENLFLLKYLQLNIPTLKCLP---LLICTLLNLETLEMP-AGYIDHSPEGIWMMQ--KLMHLNFDSITLPA-PPKN----- 259 (394)
Q Consensus 192 ~~l~~L~~L~l~~~~l~~lp---~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~--~L~~L~l~~~~~~~-~~p~----- 259 (394)
.++++|+.|+|++|.+..++ ..++.+++|++|+|+ | .+..+. .+..+. +|+.|+++ +|++. .+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~l~L~~L~L~-~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER-ELDKIKGLKLEELWLD-GNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGG-GGGGGTTSCCSEEECT-TSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCch-hhhhcccCCcceEEcc-CCcCccccCcchhHH
Confidence 35677888888888776543 445577888888888 6 666652 344444 78888887 77743 3331
Q ss_pred --CCCCCCcCceeCcc
Q 037494 260 --YSSSLKNLIFISAL 273 (394)
Q Consensus 260 --~l~~l~~L~~L~~~ 273 (394)
.+..+++|+.|+..
T Consensus 244 ~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 244 SAIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHHCTTCCEESSC
T ss_pred HHHHHHCcccCeECCc
Confidence 13455666666543
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.16 E-value=0.015 Score=53.88 Aligned_cols=31 Identities=13% Similarity=-0.021 Sum_probs=17.9
Q ss_pred CceEEEEEEeCCcchhhcc--CCCCCccEEEEec
Q 037494 122 ATVKRCFILEDLIEFISLE--QSDMYLQSFLNHS 153 (394)
Q Consensus 122 ~~~r~L~l~~~~~~~~~~~--~~~~~lr~L~l~~ 153 (394)
.+++.+.+. +....+... ..+.+|+++.+-.
T Consensus 46 ~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~ 78 (379)
T 4h09_A 46 DRISEVRVN-SGITSIGEANFNSCYNMTKVTVAS 78 (379)
T ss_dssp GGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECT
T ss_pred cCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCC
Confidence 345666666 445554443 5667777776643
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.89 E-value=0.015 Score=54.35 Aligned_cols=126 Identities=10% Similarity=0.054 Sum_probs=74.6
Q ss_pred hccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccCC-CcchhcCCCCCCCeEEEeecCCccccch-hhhhcCCCC
Q 037494 237 IWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPSS-CTPDILSRLPTVQTLRISGDLSHYHSGV-SKSLCELHK 314 (394)
Q Consensus 237 i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~~~~ 314 (394)
+....+|+.+.+. .....--...+.++++|+.+.+...-. -....+..+.+|+.+.+..+ ...+ ..+|..+.+
T Consensus 261 F~~c~~L~~i~lp-~~~~~I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~----v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 261 FDSCAYLASVKMP-DSVVSIGTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEG----ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTCSSCCEEECC-TTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT----CCEECTTTTTTCTT
T ss_pred eeecccccEEecc-cccceecCcccccccccccccCCCcccccCceeecCCCCcCEEEeCCc----ccEehHhHhhCCCC
Confidence 3445666766665 332111122355667777776643221 12234677889999988543 2223 357888999
Q ss_pred CcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEeccc
Q 037494 315 LECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNS 373 (394)
Q Consensus 315 L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~ 373 (394)
|+.+.|. .+++.+.. .|.. +++|+.+++.++... ...+....+|+.+.+..+.
T Consensus 336 L~~i~ip--~sv~~I~~~aF~~-C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 336 LERIAIP--SSVTKIPESAFSN-CTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp CCEEEEC--TTCCBCCGGGGTT-CTTCCEEEESSCHHH---HHTCBCCCCC---------
T ss_pred CCEEEEC--cccCEEhHhHhhC-CCCCCEEEECCceee---hhhhhccCCCCEEEeCCCC
Confidence 9999995 45888822 7788 999999999987532 2456677888888885443
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.13 E-value=0.22 Score=45.90 Aligned_cols=59 Identities=14% Similarity=0.117 Sum_probs=43.1
Q ss_pred hhcCCCCCcEEEecCCCCCCccCC--CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEe
Q 037494 308 SLCELHKLECLKLVNGSKLSRMVL--SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLK 370 (394)
Q Consensus 308 ~l~~~~~L~~L~l~~~~~L~~L~p--~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~ 370 (394)
.+..+..|+.+.+. .++..+ + .+.. +++|+.+.+.++.++......+.++.+|+.+.+.
T Consensus 258 aF~~~~~l~~i~l~--~~i~~i-~~~aF~~-c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 258 LLQNCTALKTLNFY--AKVKTV-PYLLCSG-CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TTTTCTTCCEEEEC--CCCSEE-CTTTTTT-CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred ccceeehhcccccc--ccceec-ccccccc-ccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 44555666666664 356666 4 5666 8999999998887765556678899999999983
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.34 E-value=0.019 Score=44.48 Aligned_cols=35 Identities=29% Similarity=0.413 Sum_probs=18.3
Q ss_pred CCceEEEEecccCCCCCcccccCCCCCCeEEEecc
Q 037494 338 PSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRN 372 (394)
Q Consensus 338 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n 372 (394)
++|+.|+|++|+++..+...+..+++|+.|+|++|
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 34555555555554444444555555555555544
No 166
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.32 E-value=0.072 Score=41.17 Aligned_cols=49 Identities=22% Similarity=0.246 Sum_probs=25.6
Q ss_pred EEEcCCCCCC--CCcccccCcccccEEecCCCCCcccccc-ccCCCCCcEEEcc
Q 037494 176 VLNWGSAVLD--QFPPGLENLFLLKYLQLNIPTLKCLPLL-ICTLLNLETLEMP 226 (394)
Q Consensus 176 ~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~ 226 (394)
+++.++++++ .+|..+. .+|++|+|++|.|+.+|.. +..+++|++|+|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 63 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLG 63 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEec
Confidence 4555555555 5554332 2455566666665555543 3345555555555
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.98 E-value=0.062 Score=44.79 Aligned_cols=109 Identities=10% Similarity=0.026 Sum_probs=56.8
Q ss_pred CCCCCccEEEEecC-CCccchhcchhHHhccCCceeEEEcCCCCCC-----CCcccccCcccccEEecCCCCCc-----c
Q 037494 141 QSDMYLQSFLNHSS-ESDHLALIDCENFCENFKYLRVLNWGSAVLD-----QFPPGLENLFLLKYLQLNIPTLK-----C 209 (394)
Q Consensus 141 ~~~~~lr~L~l~~~-~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~~~l~-----~ 209 (394)
..-+.|+.|.+.++ .+..--...+-..+..-+.|+.|+|++|.+. .+-+.+..-+.|+.|+|++|.|. .
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34456667776654 3331111122222356667777777777765 22334444566777777777665 2
Q ss_pred ccccccCCCCCcEEEcc-cC--Ccc-----ccchhhccCccCcEEEee
Q 037494 210 LPLLICTLLNLETLEMP-AG--YID-----HSPEGIWMMQKLMHLNFD 249 (394)
Q Consensus 210 lp~~l~~l~~L~~L~l~-~~--~l~-----~lp~~i~~l~~L~~L~l~ 249 (394)
+-+.+..-..|++|+|+ +. .+. .+...+..-+.|..|+++
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~ 165 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGIS 165 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEecc
Confidence 33344445557777776 41 111 122334445566666665
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.85 E-value=0.14 Score=42.58 Aligned_cols=86 Identities=15% Similarity=0.125 Sum_probs=55.1
Q ss_pred chhHHhccCCceeEEEcCCC-CCC-----CCcccccCcccccEEecCCCCCc-----cccccccCCCCCcEEEcc-cCCc
Q 037494 163 DCENFCENFKYLRVLNWGSA-VLD-----QFPPGLENLFLLKYLQLNIPTLK-----CLPLLICTLLNLETLEMP-AGYI 230 (394)
Q Consensus 163 ~l~~~~~~l~~L~~L~l~~~-~~~-----~lp~~i~~l~~L~~L~l~~~~l~-----~lp~~l~~l~~L~~L~l~-~~~l 230 (394)
.+..+...-+.|+.|+|+++ .+. .+-+.+..-+.|+.|+|++|.+. .+-+.+..-..|++|+|+ | .+
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~I 110 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FL 110 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cC
Confidence 34445567788899999875 665 23455666678888888888876 233444455678888888 6 55
Q ss_pred cc-----cchhhccCccCcEEEee
Q 037494 231 DH-----SPEGIWMMQKLMHLNFD 249 (394)
Q Consensus 231 ~~-----lp~~i~~l~~L~~L~l~ 249 (394)
.. +-..+..-+.|+.|+++
T Consensus 111 g~~Ga~ala~aL~~N~tL~~L~L~ 134 (197)
T 1pgv_A 111 TPELLARLLRSTLVTQSIVEFKAD 134 (197)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECC
T ss_pred CHHHHHHHHHHHhhCCceeEEECC
Confidence 42 22334445567777766
No 169
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=22.30 E-value=26 Score=20.15 Aligned_cols=9 Identities=11% Similarity=0.353 Sum_probs=7.4
Q ss_pred cccCCCcee
Q 037494 33 CVFCPSIEI 41 (394)
Q Consensus 33 ~~Fp~~~~i 41 (394)
++||+||+|
T Consensus 30 ~mLP~GYkI 38 (39)
T 3lqv_P 30 AMFPEGYKV 38 (39)
T ss_dssp HTCCSSEEE
T ss_pred HhCCCCccc
Confidence 688999886
Done!