Query 037495
Match_columns 369
No_of_seqs 264 out of 1640
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 22:16:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037495.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037495hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a2n_B Isoprenylcysteine carbo 99.9 1E-24 3.5E-29 198.1 16.3 169 186-368 23-193 (194)
2 3r5y_A Putative uncharacterize 24.3 38 0.0013 28.5 2.3 22 344-367 120-141 (147)
3 3r5z_A Putative uncharacterize 18.8 58 0.002 27.3 2.3 22 344-367 118-139 (145)
4 3r5l_A Deazaflavin-dependent n 15.4 19 0.00064 29.4 -1.5 23 343-367 95-117 (122)
5 1dum_A Magainin 2; antibiotic, 11.9 86 0.0029 18.0 1.1 9 346-354 9-17 (26)
6 3h96_A F420-H2 dependent reduc 11.3 1.3E+02 0.0044 25.0 2.5 23 344-367 114-137 (143)
7 1loi_A Cyclic 3',5'-AMP specif 8.5 1E+02 0.0034 17.7 0.5 20 125-144 2-22 (26)
8 2oxg_Z SOXZ protein; immunoglo 6.4 94 0.0032 24.5 -0.4 9 296-304 25-33 (108)
9 1v8h_A Sulfur oxidation protei 6.3 96 0.0033 24.4 -0.4 9 296-304 24-32 (107)
10 1vk5_A Expressed protein; stru 6.0 1.6E+02 0.0055 24.4 0.8 26 335-361 28-53 (157)
No 1
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=99.92 E-value=1e-24 Score=198.10 Aligned_cols=169 Identities=17% Similarity=0.188 Sum_probs=116.6
Q ss_pred HHHhhhhcccccccchhHHHhhhhhhHHHhhhhhhHHHHhhhheeeeeeCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 037495 186 AYILDYFIYEEYMTSTWDIIAERLGFMLVFGDLVWIPFTFSIQGWWLLHNQVELPTATVIANCIIFLIGYMVFRGANKQK 265 (369)
Q Consensus 186 ~Yv~~~~~~E~~~~~t~di~~e~~G~~l~~g~l~~vPf~y~l~~~yl~~~~~~l~~~~~~~~~~l~~~G~~i~~~ad~Qk 265 (369)
.+..+.-.+|..... |-..|.......+-.+..+|.+.....+- ...+.+++.+...+|+++.++|+.++..|+.|.
T Consensus 23 ~~~~~~~~~~~~~~~--~~~~e~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~p~~~~~~G~~l~l~G~~l~~~a~~~L 99 (194)
T 4a2n_B 23 VYGTRAMKNKSKKKV--RPNFEKSLVFLNFIGMVFLPLTAVFSSYL-DSFNINLPDSIRLFALIVTFLNIGLFTKIHKDL 99 (194)
T ss_dssp HHHHHHSSSCEEECC--SHHHHHHHHHHHHHHHTHHHHHHHSCSGG-GGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccchhcc--ccchHHHHHHHHHHHHHHHHHHHHHhcCc-chhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444443322 33334333333333334556655432220 011235677788899999999999999999997
Q ss_pred HHH-hhCCCCCcCCCCCceeCCeeeeccccccccCcccHHHHHHHHHHHHhhcCCCchhHH-HHHHHHHHHHhhccHhHH
Q 037495 266 HVF-KKNPKIHIWGKPPKVIGGKLLASGYWGMARHCNYLGDLLLALSFSLPCGTSSLVPYF-YPIYLVILLIWRERRDEA 343 (369)
Q Consensus 266 ~~f-r~~~~~~~~~~~~~~~~~~Ll~sG~w~~~RHPnY~G~il~~~g~~l~~g~~~~~~~~-~~i~~~~ll~~R~~r~E~ 343 (369)
.++ +... ++ ..+++|+++|+|+++|||||+|++++++|+++.++ ++++.+ .++.++.++..|..+||+
T Consensus 100 g~~f~~~~-------~~-~~~~~Lvt~G~y~~vRHP~Y~G~~l~~~g~~l~~~--s~~~~~~~~~~~~~~~~~ri~~EE~ 169 (194)
T 4a2n_B 100 GNNWSAIL-------EI-KDGHKLVKEGIYKNIRHPMYAHLWLWVITQGIILS--NWVVLIFGIVAWAILYFIRVPKEEE 169 (194)
T ss_dssp GGGCCSSC-------CE-ETTCCCCCSSTTTTBSSHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCC-------CC-CCCCeeeecCcchhccCccHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543 3221 11 12789999999999999999999999999999874 555554 344455566788889999
Q ss_pred HHHHHhhhHHHHHHhhCCcceeccc
Q 037495 344 RCAAKYREIWVEYCRLVPWRILPYF 368 (369)
Q Consensus 344 ~~~~kyG~~y~~Y~~~V~~r~IP~I 368 (369)
.|++|||++|++||++|| |+||+|
T Consensus 170 ~L~~~fG~~Y~~Y~~rv~-r~iP~i 193 (194)
T 4a2n_B 170 LLIEEFGDEYIEYMGKTG-RLFPKV 193 (194)
T ss_dssp HHHHHHTHHHHHHHHHCB-SSSCC-
T ss_pred HHHHHhCHHHHHHHHhCC-eeCcee
Confidence 999999999999999999 999997
No 2
>3r5y_A Putative uncharacterized protein; PA-824, nitroimidazoles, split barrel-like fold, DUF385, DEA dependent nitroreductase, unknown function; HET: F42; 1.80A {Nocardia farcinica}
Probab=24.26 E-value=38 Score=28.51 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=17.4
Q ss_pred HHHHHhhhHHHHHHhhCCcceecc
Q 037495 344 RCAAKYREIWVEYCRLVPWRILPY 367 (369)
Q Consensus 344 ~~~~kyG~~y~~Y~~~V~~r~IP~ 367 (369)
++.++| ++|++|++++. |-||=
T Consensus 120 ~~~~~~-P~y~~Yq~~t~-R~IPv 141 (147)
T 3r5y_A 120 RAVRAY-PTYQEYQDNTR-RLIPV 141 (147)
T ss_dssp HHHHHC-THHHHHHHTCS-SCCCE
T ss_pred HHHHHC-CCHHHHHhhcC-CcCcE
Confidence 355667 67999999997 88884
No 3
>3r5z_A Putative uncharacterized protein; split barrel-like fold, DUF385, deazaflavin-dependent reduct F420-dependent reductase, FDR; HET: F42; 1.50A {Nocardia farcinica}
Probab=18.78 E-value=58 Score=27.29 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=17.3
Q ss_pred HHHHHhhhHHHHHHhhCCcceecc
Q 037495 344 RCAAKYREIWVEYCRLVPWRILPY 367 (369)
Q Consensus 344 ~~~~kyG~~y~~Y~~~V~~r~IP~ 367 (369)
++.++| ++|++|++++. |-||=
T Consensus 118 ~~~~~~-p~y~~Yq~~t~-R~iPv 139 (145)
T 3r5z_A 118 RAVEVW-PDYAEYQTKTT-REIPV 139 (145)
T ss_dssp HHHHHC-THHHHHGGGCS-SCCCE
T ss_pred HHHHHC-cCHHHHHHhcC-CcCce
Confidence 355666 67999999997 88884
No 4
>3r5l_A Deazaflavin-dependent nitroreductase; PA-824, split barrel-like fold, DUF385, deazaflavin-dependen nitroreductase, nitroimidazoles; HET: MES; 1.55A {Mycobacterium tuberculosis} PDB: 3r5p_A 3r5w_A* 3r5r_A*
Probab=15.38 E-value=19 Score=29.38 Aligned_cols=23 Identities=17% Similarity=0.407 Sum_probs=18.0
Q ss_pred HHHHHHhhhHHHHHHhhCCcceecc
Q 037495 343 ARCAAKYREIWVEYCRLVPWRILPY 367 (369)
Q Consensus 343 ~~~~~kyG~~y~~Y~~~V~~r~IP~ 367 (369)
+++.++| ++|++|++++. |-||=
T Consensus 95 ~~~~~~~-p~y~~yq~~t~-R~ipv 117 (122)
T 3r5l_A 95 PQLVTMY-PSYQDYQSWTD-RTIPI 117 (122)
T ss_dssp HHHHHHC-TTCCCTTGGGC-TTSCE
T ss_pred HHHHHHC-cCHHHHHhhcC-CcccE
Confidence 4466778 56999999997 88884
No 5
>1dum_A Magainin 2; antibiotic, dimer, amphipathic helix, membrane, vesicle, bilayer, antimicrobial protein; NMR {Synthetic} SCOP: j.4.1.1 PDB: 2mag_A
Probab=11.91 E-value=86 Score=17.98 Aligned_cols=9 Identities=44% Similarity=1.010 Sum_probs=7.4
Q ss_pred HHHhhhHHH
Q 037495 346 AAKYREIWV 354 (369)
Q Consensus 346 ~~kyG~~y~ 354 (369)
.+|||++|.
T Consensus 9 akkfgkawv 17 (26)
T 1dum_A 9 AKKFGKAWV 17 (26)
T ss_dssp HHHHHHHHH
T ss_pred HHHHhHHHH
Confidence 578999886
No 6
>3h96_A F420-H2 dependent reductase A; pnpox, flavin, aflatoxin, flavoprotein; 2.00A {Mycobacterium smegmatis str}
Probab=11.31 E-value=1.3e+02 Score=25.02 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=16.9
Q ss_pred HHHHHhhhHHHHHHhhCCc-ceecc
Q 037495 344 RCAAKYREIWVEYCRLVPW-RILPY 367 (369)
Q Consensus 344 ~~~~kyG~~y~~Y~~~V~~-r~IP~ 367 (369)
++.++| +.|++|++++.- |-||=
T Consensus 114 ~~~~~~-P~y~~Yq~~t~~~R~iPv 137 (143)
T 3h96_A 114 EQARRY-PGFADYEKKTAGIRTIPV 137 (143)
T ss_dssp HHHHHC-THHHHHHHHTTTTCCCCE
T ss_pred HHHHHC-cCHHHHHHhcCCCCcccE
Confidence 355667 569999999853 67773
No 7
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=8.49 E-value=1e+02 Score=17.70 Aligned_cols=20 Identities=15% Similarity=0.096 Sum_probs=14.0
Q ss_pred chhhhhcccccCccc-ccccc
Q 037495 125 LIHDWWFGIQLNPQF-MAIDL 144 (369)
Q Consensus 125 ~iyDff~G~elnPri-g~~d~ 144 (369)
++-|||.-.--.|-+ ||+|.
T Consensus 2 plvdffcetcskpwlvgwwdq 22 (26)
T 1loi_A 2 PLVDFFCETCSKPWLVGWWDQ 22 (26)
T ss_dssp CHHHHHHHTSSCTTGGGGHHH
T ss_pred chHHHHHHhcCCchhhhhHHH
Confidence 466888777767766 77774
No 8
>2oxg_Z SOXZ protein; immunoglobulin-like beta-sandwich fold, transport protein; 1.40A {Paracoccus denitrificans} PDB: 2ox5_Z 2oxh_Z*
Probab=6.37 E-value=94 Score=24.54 Aligned_cols=9 Identities=22% Similarity=0.172 Sum_probs=7.9
Q ss_pred cccCcccHH
Q 037495 296 MARHCNYLG 304 (369)
Q Consensus 296 ~~RHPnY~G 304 (369)
.++|||.+|
T Consensus 25 ~I~HPMetG 33 (108)
T 2oxg_Z 25 LISHKMESG 33 (108)
T ss_dssp EECCCCBCS
T ss_pred EeECCCccc
Confidence 489999997
No 9
>1v8h_A Sulfur oxidation protein SOXZ; lithotrophic sulfur oxidation, unknown function, structural genomics; 1.20A {Thermus thermophilus HB8} SCOP: b.1.18.19
Probab=6.26 E-value=96 Score=24.41 Aligned_cols=9 Identities=44% Similarity=0.512 Sum_probs=7.9
Q ss_pred cccCcccHH
Q 037495 296 MARHCNYLG 304 (369)
Q Consensus 296 ~~RHPnY~G 304 (369)
.++|||.+|
T Consensus 24 ~I~HPmetG 32 (107)
T 1v8h_A 24 VAQHPNEPG 32 (107)
T ss_dssp EECCCCBCS
T ss_pred EeECCCCcc
Confidence 499999997
No 10
>1vk5_A Expressed protein; structural genomics, unknown function, protein structur initiative, center for eukaryotic structural genomics, CESG; HET: CPS; 1.60A {Arabidopsis thaliana} SCOP: a.220.1.1 PDB: 2q3t_A* 3gan_A*
Probab=6.02 E-value=1.6e+02 Score=24.42 Aligned_cols=26 Identities=27% Similarity=0.514 Sum_probs=14.1
Q ss_pred HhhccHhHHHHHHHhhhHHHHHHhhCC
Q 037495 335 IWRERRDEARCAAKYREIWVEYCRLVP 361 (369)
Q Consensus 335 ~~R~~r~E~~~~~kyG~~y~~Y~~~V~ 361 (369)
-+|....|..+.+| -|.|++|+|+.|
T Consensus 28 s~k~~~~e~~liRr-AEmYQ~YMK~iP 53 (157)
T 1vk5_A 28 SHRDVADEGSLLRR-AEMYQDYMKQVP 53 (157)
T ss_dssp --------CTTHHH-HHHHHHHHHTSC
T ss_pred cccccCcchhhhhH-HHHHHHHHHhCC
Confidence 34555555555555 688999999987
Done!