Query 037495
Match_columns 369
No_of_seqs 264 out of 1640
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 22:16:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037495.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037495hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1e7la1 a.140.4.1 (A:104-157) 22.7 16 0.0012 23.8 1.4 13 299-311 2-14 (54)
2 d1rgoa2 g.66.1.1 (A:187-220) B 12.0 27 0.002 20.4 0.4 14 297-310 1-14 (34)
3 d1eysh2 f.23.10.1 (H:7-43) Pho 11.0 68 0.005 19.0 2.0 33 13-45 4-36 (37)
4 d1kf6c_ f.21.2.2 (C:) Fumarate 6.0 3.9E+02 0.028 19.9 5.1 46 61-107 38-85 (130)
5 d2fg1a1 c.50.1.2 (A:2-155) Hyp 5.7 1.3E+02 0.0097 22.2 2.2 16 343-358 36-51 (154)
6 d1v8ha1 b.1.18.19 (A:2-107) Su 5.5 53 0.0039 24.0 -0.4 10 296-305 24-33 (106)
7 d1ppjg_ f.23.13.1 (G:) Ubiquin 4.9 2.7E+02 0.02 18.8 3.2 22 248-269 49-70 (75)
8 d1ytqa2 b.11.1.1 (A:104-194) b 4.8 54 0.0039 23.1 -0.8 21 285-305 38-58 (91)
9 d1gv2a2 a.4.1.3 (A:144-190) c- 4.7 1.4E+02 0.01 18.1 1.3 18 345-362 15-32 (47)
10 d1h4ax2 b.11.1.1 (X:87-174) ga 4.6 59 0.0043 22.7 -0.7 21 285-305 36-56 (88)
No 1
>d1e7la1 a.140.4.1 (A:104-157) Recombination endonuclease VII, C-terminal and dimerization domains {Bacteriophage T4 [TaxId: 10665]}
Probab=22.70 E-value=16 Score=23.76 Aligned_cols=13 Identities=38% Similarity=0.585 Sum_probs=11.4
Q ss_pred CcccHHHHHHHHH
Q 037495 299 HCNYLGDLLLALS 311 (369)
Q Consensus 299 HPnY~G~il~~~g 311 (369)
||||.+|..-+++
T Consensus 2 Hp~~~~D~~K~FS 14 (54)
T d1e7la1 2 HPNFVGDKSKEFS 14 (54)
T ss_dssp CTHHHHHHHHHHH
T ss_pred CcchhhHHHHHHH
Confidence 9999999987765
No 2
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.95 E-value=27 Score=20.43 Aligned_cols=14 Identities=29% Similarity=0.458 Sum_probs=8.6
Q ss_pred ccCcccHHHHHHHH
Q 037495 297 ARHCNYLGDLLLAL 310 (369)
Q Consensus 297 ~RHPnY~G~il~~~ 310 (369)
+|||.|--.+.-.+
T Consensus 1 ~rhpkyKT~lC~~f 14 (34)
T d1rgoa2 1 TRHPKYKTELCRTF 14 (34)
T ss_dssp CCCTTTTCSBCHHH
T ss_pred CCCCCccchhcccc
Confidence 58888865544433
No 3
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=10.99 E-value=68 Score=19.00 Aligned_cols=33 Identities=12% Similarity=0.122 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHHHHHHHhccCCceeecCcccC
Q 037495 13 SVDSAAILITFLTYLAIAGSILPGKVVPGAVLQ 45 (369)
Q Consensus 13 ~~~a~~~y~~~~~~~~~l~~~lPG~~~~G~~l~ 45 (369)
|.....+|+-|+.|-.+.+.+---..-+|-|+.
T Consensus 4 D~Aql~ly~Fw~FFagLi~YL~rE~~REGyPle 36 (37)
T d1eysh2 4 DAAQITIWAFWLFFFGLIIYLRREDKREGYPLD 36 (37)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTSSSCSCB
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcccccCCCCC
Confidence 445567888888888777766544455666553
No 4
>d1kf6c_ f.21.2.2 (C:) Fumarate reductase subunit FrdC {Escherichia coli [TaxId: 562]}
Probab=6.03 E-value=3.9e+02 Score=19.87 Aligned_cols=46 Identities=11% Similarity=-0.008 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhhhccch--HhhHhhhHHHHHHHHHHHHHHHHHHHhhc
Q 037495 61 TLLVALLGFGAYMNFISA--TVISDRGFELLSTTFIFSVLVTSALYVAG 107 (369)
Q Consensus 61 ~~t~~~~~~~~~~~~~~~--~~i~d~~~~l~~~~~i~s~~~s~~ly~k~ 107 (369)
+..+.++++.+..++... .++.-.-.|++...|+++++.++ +..+-
T Consensus 38 f~lvLl~Gl~~L~~g~~aw~~fv~flqnP~vv~lniiaLaa~L-~Ha~T 85 (130)
T d1kf6c_ 38 FSIELIFGLFALKNGPEAWAGFVDFLQNPVIVIINLITLAAAL-LHTKT 85 (130)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHTSSHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhCcHHHHHHHHHHHHHH-HHHHH
Confidence 333344555543333222 56666667888999999986654 34443
No 5
>d2fg1a1 c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=5.67 E-value=1.3e+02 Score=22.20 Aligned_cols=16 Identities=13% Similarity=0.080 Sum_probs=9.7
Q ss_pred HHHHHHhhhHHHHHHh
Q 037495 343 ARCAAKYREIWVEYCR 358 (369)
Q Consensus 343 ~~~~~kyG~~y~~Y~~ 358 (369)
...++|||+.+++|++
T Consensus 36 ~ai~~~~p~~~~~~~~ 51 (154)
T d2fg1a1 36 LALSKKWKMPEEAYRQ 51 (154)
T ss_dssp HHHHHHCSHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHH
Confidence 3456777766655554
No 6
>d1v8ha1 b.1.18.19 (A:2-107) Sulfur oxidation protein SoxZ {Thermus thermophilus [TaxId: 274]}
Probab=5.50 E-value=53 Score=24.03 Aligned_cols=10 Identities=40% Similarity=0.461 Sum_probs=8.0
Q ss_pred cccCcccHHH
Q 037495 296 MARHCNYLGD 305 (369)
Q Consensus 296 ~~RHPnY~G~ 305 (369)
+++|||.+|.
T Consensus 24 li~HPMeTG~ 33 (106)
T d1v8ha1 24 VAQHPNEPGT 33 (106)
T ss_dssp EECCCCBCSC
T ss_pred EEECCCcccc
Confidence 5789999873
No 7
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.93 E-value=2.7e+02 Score=18.75 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 037495 248 CIIFLIGYMVFRGANKQKHVFK 269 (369)
Q Consensus 248 ~~l~~~G~~i~~~ad~Qk~~fr 269 (369)
+-=++++|++..+++....+.+
T Consensus 49 ~PPfi~~Y~iy~W~~~~~~~~~ 70 (75)
T d1ppjg_ 49 APPFVAFYLVYTWGTQEFEKSK 70 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHh
Confidence 4456889999999987655543
No 8
>d1ytqa2 b.11.1.1 (A:104-194) beta-Crystallin {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.77 E-value=54 Score=23.12 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=17.4
Q ss_pred CCeeeeccccccccCcccHHH
Q 037495 285 GGKLLASGYWGMARHCNYLGD 305 (369)
Q Consensus 285 ~~~Ll~sG~w~~~RHPnY~G~ 305 (369)
.+--+.+|.|-.--||||.|.
T Consensus 38 ~Si~V~~G~Wv~Ye~~nf~G~ 58 (91)
T d1ytqa2 38 SSVRVQSGTWVGYQYPGYRGL 58 (91)
T ss_dssp CEEEECSSCEEEEEETTTEEE
T ss_pred eEEEecCCCEEEEecCCcEEE
Confidence 344578899999999999884
No 9
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.68 E-value=1.4e+02 Score=18.05 Aligned_cols=18 Identities=22% Similarity=0.543 Sum_probs=13.0
Q ss_pred HHHHhhhHHHHHHhhCCc
Q 037495 345 CAAKYREIWVEYCRLVPW 362 (369)
Q Consensus 345 ~~~kyG~~y~~Y~~~V~~ 362 (369)
+.++||..|.+-.+.+|-
T Consensus 15 ~v~~~G~~W~~Ia~~~~g 32 (47)
T d1gv2a2 15 AHKRLGNRWAEIAKLLPG 32 (47)
T ss_dssp HHHHHSSCHHHHHTTCTT
T ss_pred HHHHHhhHHHHHHhHcCC
Confidence 346889999877776653
No 10
>d1h4ax2 b.11.1.1 (X:87-174) gamma-Crystallin {Human (Homo sapiens), isoform D [TaxId: 9606]}
Probab=4.59 E-value=59 Score=22.71 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=18.0
Q ss_pred CCeeeeccccccccCcccHHH
Q 037495 285 GGKLLASGYWGMARHCNYLGD 305 (369)
Q Consensus 285 ~~~Ll~sG~w~~~RHPnY~G~ 305 (369)
.+--+.+|.|-.--||||.|.
T Consensus 36 ~Si~V~~G~Wv~Ye~~nf~G~ 56 (88)
T d1h4ax2 36 HSLNVLEGSWVLYELSNYRGR 56 (88)
T ss_dssp CEEEEEESCEEEEEETTTEEE
T ss_pred eEEEEccCCEEEEecCCcEEE
Confidence 556778999999999999884
Done!