BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037497
(333 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FLC|O Chain O, Crystal Structure Of The His-Tagged H232r Mutant Of
Glycerol Kinase From Enterococcus Casseliflavus With
Glycerol
pdb|3FLC|X Chain X, Crystal Structure Of The His-Tagged H232r Mutant Of
Glycerol Kinase From Enterococcus Casseliflavus With
Glycerol
Length = 518
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 60/126 (47%), Gaps = 12/126 (9%)
Query: 68 VGERLY-LGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLE 126
+ E+ Y + +D GT+ +R I +++G + +KE+P++ + W+ +++ ++
Sbjct: 13 MAEKNYVMAIDQGTTSSRAIIFDRNGKKIGSSQKEFPQYFPKSG--WVEHNANEIWNSVQ 70
Query: 127 AVPV------NLRP-LIASISIDGTSATTIIIDSNSGEPLWRPFLYNESCPDALPVVKSI 179
+V +RP IA I I TT++ D +G+P+ ++ + P+ +
Sbjct: 71 SVIAGAFIESGIRPEAIAGIGITNQRETTVVWDKTTGQPIANAIVWQ--SRQSSPIADQL 128
Query: 180 APANHT 185
HT
Sbjct: 129 KVDGHT 134
>pdb|1R59|O Chain O, Enterococcus Casseliflavus Glycerol Kinase
pdb|1R59|X Chain X, Enterococcus Casseliflavus Glycerol Kinase
Length = 505
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 56/119 (47%), Gaps = 11/119 (9%)
Query: 74 LGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPV--- 130
+ +D GT+ +R I +++G + +KE+P++ + W+ +++ +++V
Sbjct: 7 MAIDQGTTSSRAIIFDRNGKKIGSSQKEFPQYFPKSG--WVEHNANEIWNSVQSVIAGAF 64
Query: 131 ---NLRP-LIASISIDGTSATTIIIDSNSGEPLWRPFLYNESCPDALPVVKSIAPANHT 185
+RP IA I I TT++ D +G+P+ ++ + P+ + HT
Sbjct: 65 IESGIRPEAIAGIGITNQRETTVVWDKTTGQPIANAIVWQ--SRQSSPIADQLKVDGHT 121
>pdb|3H3N|X Chain X, Glycerol Kinase H232r With Glycerol
pdb|3H3N|O Chain O, Glycerol Kinase H232r With Glycerol
pdb|3H3O|O Chain O, Glycerol Kinase H232r With Ethylene Glycol
pdb|3H3O|X Chain X, Glycerol Kinase H232r With Ethylene Glycol
pdb|3H3O|B Chain B, Glycerol Kinase H232r With Ethylene Glycol
pdb|3H3O|C Chain C, Glycerol Kinase H232r With Ethylene Glycol
Length = 506
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 60/126 (47%), Gaps = 12/126 (9%)
Query: 68 VGERLY-LGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLE 126
+ E+ Y + +D GT+ +R I +++G + +KE+P++ + W+ +++ ++
Sbjct: 1 MAEKNYVMAIDQGTTSSRAIIFDRNGKKIGSSQKEFPQYFPKSG--WVEHNANEIWNSVQ 58
Query: 127 AVPV------NLRP-LIASISIDGTSATTIIIDSNSGEPLWRPFLYNESCPDALPVVKSI 179
+V +RP IA I I TT++ D +G+P+ ++ + P+ +
Sbjct: 59 SVIAGAFIESGIRPEAIAGIGITNQRETTVVWDKTTGQPIANAIVWQ--SRQSSPIADQL 116
Query: 180 APANHT 185
HT
Sbjct: 117 KVDGHT 122
>pdb|3H45|X Chain X, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H45|O Chain O, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H45|C Chain C, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H45|D Chain D, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H46|X Chain X, Glycerol Kinase H232e With Glycerol
pdb|3H46|O Chain O, Glycerol Kinase H232e With Glycerol
Length = 506
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 60/126 (47%), Gaps = 12/126 (9%)
Query: 68 VGERLY-LGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLE 126
+ E+ Y + +D GT+ +R I +++G + +KE+P++ + W+ +++ ++
Sbjct: 1 MAEKNYVMAIDQGTTSSRAIIFDRNGKKIGSSQKEFPQYFPKSG--WVEHNANEIWNSVQ 58
Query: 127 AVPV------NLRP-LIASISIDGTSATTIIIDSNSGEPLWRPFLYNESCPDALPVVKSI 179
+V +RP IA I I TT++ D +G+P+ ++ + P+ +
Sbjct: 59 SVIAGAFIESGIRPEAIAGIGITNQRETTVVWDKTTGQPIANAIVWQ--SRQSSPIADQL 116
Query: 180 APANHT 185
HT
Sbjct: 117 KVDGHT 122
>pdb|1XUP|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Complexed With
Glycerol
pdb|1XUP|X Chain X, Enterococcus Casseliflavus Glycerol Kinase Complexed With
Glycerol
Length = 487
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 56/119 (47%), Gaps = 11/119 (9%)
Query: 74 LGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPV--- 130
+ +D GT+ +R I +++G + +KE+P++ + W+ +++ +++V
Sbjct: 3 MAIDQGTTSSRAIIFDRNGKKIGSSQKEFPQYFPKSG--WVEHNANEIWNSVQSVIAGAF 60
Query: 131 ---NLRP-LIASISIDGTSATTIIIDSNSGEPLWRPFLYNESCPDALPVVKSIAPANHT 185
+RP IA I I TT++ D +G+P+ ++ + P+ + HT
Sbjct: 61 IESGIRPEAIAGIGITNQRETTVVWDKTTGQPIANAIVWQ--SRQSSPIADQLKVDGHT 117
>pdb|3D7E|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Mutant
His232ala Complexed With Glycerol
pdb|3D7E|X Chain X, Enterococcus Casseliflavus Glycerol Kinase Mutant
His232ala Complexed With Glycerol
Length = 505
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 56/119 (47%), Gaps = 11/119 (9%)
Query: 74 LGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPV--- 130
+ +D GT+ +R I +++G + +KE+P++ + W+ +++ +++V
Sbjct: 7 MAIDQGTTSSRAIIFDRNGKKIGSSQKEFPQYFPKSG--WVEHNANEIWNSVQSVIAGAF 64
Query: 131 ---NLRP-LIASISIDGTSATTIIIDSNSGEPLWRPFLYNESCPDALPVVKSIAPANHT 185
+RP IA I I TT++ D +G+P+ ++ + P+ + HT
Sbjct: 65 IESGIRPEAIAGIGITNQRETTVVWDKTTGQPIANAIVWQ--SRQSSPIADQLKVDGHT 121
>pdb|3G25|A Chain A, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3G25|B Chain B, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3G25|C Chain C, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3G25|D Chain D, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3GE1|A Chain A, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
pdb|3GE1|B Chain B, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
pdb|3GE1|C Chain C, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
pdb|3GE1|D Chain D, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
Length = 501
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 9/104 (8%)
Query: 70 ERLYLGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRS-----WKVTLFSL 124
E+ L +D GT+ +R + N+ G I ++E+ ++ + W+ W L
Sbjct: 5 EKYILSIDQGTTSSRAILFNQKGEIAGVAQREFKQYFPQSG--WVEHDANEIWTSVLAVX 62
Query: 125 LEAVPVN-LRP-LIASISIDGTSATTIIIDSNSGEPLWRPFLYN 166
E + N +R IA I I TT++ D ++G P++ ++
Sbjct: 63 TEVINENDVRADQIAGIGITNQRETTVVWDKHTGRPIYHAIVWQ 106
>pdb|3EZW|A Chain A, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|B Chain B, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|E Chain E, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|G Chain G, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|C Chain C, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|D Chain D, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|F Chain F, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|H Chain H, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
Length = 526
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/103 (20%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 70 ERLYLGMDFGTSGARFAIINKDGTILSEGKKEY------PKFTTEESIDWLRSWKVTLFS 123
++ + +D GT+ +R +++ D I+S ++E+ P + + ++ + TL
Sbjct: 3 KKYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVE 62
Query: 124 LLEAVPVNLRPLIASISIDGTSATTIIIDSNSGEPLWRPFLYN 166
+L ++ IA+I I TTI+ + +G+P++ ++
Sbjct: 63 VLAKADIS-SDQIAAIGITNQRETTIVWEKETGKPIYNAIVWQ 104
>pdb|1GLA|G Chain G, Structure Of The Regulatory Complex Of Escherichia Coli
Iiiglc With Glycerol Kinase
pdb|1GLB|G Chain G, Structure Of The Regulatory Complex Of Escherichia Coli
Iiiglc With Glycerol Kinase
pdb|1GLC|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|1GLD|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|1GLE|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|1GLF|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|Y Chain Y, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|Z Chain Z, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|X Chain X, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BOT|O Chain O, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate.
pdb|1BOT|Z Chain Z, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate.
pdb|1BO5|O Chain O, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate.
pdb|1BO5|Z Chain Z, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate
Length = 501
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/103 (20%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 70 ERLYLGMDFGTSGARFAIINKDGTILSEGKKEY------PKFTTEESIDWLRSWKVTLFS 123
++ + +D GT+ +R +++ D I+S ++E+ P + + ++ + TL
Sbjct: 3 KKYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVE 62
Query: 124 LLEAVPVNLRPLIASISIDGTSATTIIIDSNSGEPLWRPFLYN 166
+L ++ IA+I I TTI+ + +G+P++ ++
Sbjct: 63 VLAKADIS-SDQIAAIGITNQRETTIVWEKETGKPIYNAIVWQ 104
>pdb|2ZF5|O Chain O, Crystal Structure Of Highly Thermostable Glycerol Kinase
From A Hyperthermophilic Archaeon
pdb|2ZF5|Y Chain Y, Crystal Structure Of Highly Thermostable Glycerol Kinase
From A Hyperthermophilic Archaeon
Length = 497
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 12/132 (9%)
Query: 70 ERLYLGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRS-----WKVTLFSL 124
E+ L +D GT+ AR I +++ I G+ E+P+ W+ W L ++
Sbjct: 2 EKFVLSLDEGTTSARAIIFDRESNIHGIGQYEFPQHYPRPG--WVEHNPEEIWDAQLRAI 59
Query: 125 LEAVP-VNLRP-LIASISIDGTSATTIIIDSNSGEPLWRPFLYNESCPDALPVVKSIAPA 182
+A+ + P IA+I + TT++ D + G+PL+ ++ C +V+ I
Sbjct: 60 KDAIQSARIEPNQIAAIGVTNQRETTLVWDKD-GKPLYNAIVWQ--CRRTAEMVEEIKRE 116
Query: 183 NHTVCSGTSTLC 194
T+ + L
Sbjct: 117 YGTMIKEKTGLV 128
>pdb|1BU6|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|Y Chain Y, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|Z Chain Z, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|X Chain X, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
Length = 501
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/103 (20%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 70 ERLYLGMDFGTSGARFAIINKDGTILSEGKKEY------PKFTTEESIDWLRSWKVTLFS 123
++ + +D GT+ +R +++ D I+S ++E+ P + + ++ + TL
Sbjct: 3 KKYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVE 62
Query: 124 LLEAVPVNLRPLIASISIDGTSATTIIIDSNSGEPLWRPFLYN 166
+L ++ IA+I I TTI+ + +G+P++ ++
Sbjct: 63 VLTKADIS-SDQIAAIGITNQRETTIVWEKETGKPIYNAIVWQ 104
>pdb|1BWF|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1BWF|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLJ|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLJ|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLL|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLL|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
Length = 501
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 70 ERLYLGMDFGTSGARFAIINKDGTILSEGKKE----YPKFTTEESIDWLRSWKVTLFSLL 125
++ + +D GT+ +R +++ D I+S ++E YPK E D + W ++L+
Sbjct: 3 KKYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEH-DPMEIWATQSWTLV 61
Query: 126 EAVPVN--LRPLIASISIDGTSATTIIIDSNSGEPLWRPFLYN 166
E + IA+I I TTI+ + +G+P++ ++
Sbjct: 62 EVLAKADISSDQIAAIGITNQRETTIVWEKETGKPIYNAIVWQ 104
>pdb|2YHW|A Chain A, High-Resolution Crystal Structures Of N-Acetylmannosamine
Kinase: Insights About Substrate Specificity, Activity
And Inhibitor Modelling
Length = 343
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 74 LGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVNLR 133
L +D G + R AI++ G I+ + + PK T EE I+ + ++ + + EAV +N R
Sbjct: 33 LAVDLGGTNLRVAIVSMKGEIVKKYTQFNPK-TYEERINLI--LQMCVEAAAEAVKLNCR 89
Query: 134 PLIASISIDG 143
L IS G
Sbjct: 90 ILGVGISTGG 99
>pdb|3EO3|A Chain A, Crystal Structure Of The N-Acetylmannosamine Kinase Domain
Of Human Gne Protein
pdb|3EO3|B Chain B, Crystal Structure Of The N-Acetylmannosamine Kinase Domain
Of Human Gne Protein
pdb|3EO3|C Chain C, Crystal Structure Of The N-Acetylmannosamine Kinase Domain
Of Human Gne Protein
Length = 333
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 74 LGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVNLR 133
L +D G + R AI++ G I+ + + PK T EE I+ + ++ + + EAV +N R
Sbjct: 23 LAVDLGGTNLRVAIVSMKGEIVKKYTQFNPK-TYEERINLI--LQMCVEAAAEAVKLNCR 79
Query: 134 PLIASISIDG 143
L IS G
Sbjct: 80 ILGVGISTGG 89
>pdb|2YHY|A Chain A, Structure Of N-Acetylmannosamine Kinase In Complex With N-
Acetylmannosamine And Adp
pdb|2YI1|A Chain A, Crystal Structure Of N-Acetylmannosamine Kinase In Complex
With N-Acetyl Mannosamine 6-Phosphate And Adp
Length = 343
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 74 LGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVNLR 133
L +D G + R AI++ G I+ + + PK T EE I+ + ++ + + EAV +N R
Sbjct: 33 LAVDLGGTNLRVAIVSMKGEIVKKYTQFNPK-TYEERINLI--LQMCVEAAAEAVKLNCR 89
Query: 134 PLIASISIDG 143
L IS G
Sbjct: 90 ILGVGISTGG 99
>pdb|2ITM|A Chain A, Crystal Structure Of The E. Coli Xylulose Kinase Complexed
With Xylulose
pdb|2ITM|B Chain B, Crystal Structure Of The E. Coli Xylulose Kinase Complexed
With Xylulose
pdb|2NLX|A Chain A, Crystal Structure Of The Apo E. Coli Xylulose Kinase
pdb|2NLX|B Chain B, Crystal Structure Of The Apo E. Coli Xylulose Kinase
Length = 484
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 9/55 (16%)
Query: 72 LYLGMDFGTSGARFAIINKDGTILSEG------KKEYPKFTTEESIDWLRSWKVT 120
+Y+G+D GTSG + ++N+ G +++ + +P ++ ++ W W+ T
Sbjct: 1 MYIGIDLGTSGVKVILLNEQGEVVAAQTEKLTVSRPHPLWSEQDPEQW---WQAT 52
>pdb|4E1J|A Chain A, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
pdb|4E1J|B Chain B, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
pdb|4E1J|C Chain C, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
pdb|4E1J|D Chain D, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
Length = 520
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/101 (20%), Positives = 46/101 (45%), Gaps = 9/101 (8%)
Query: 74 LGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRS-----WKVTLFSLLEAV 128
L +D GT+ R + + + I G+KE+ + + W+ W+ + ++ EA+
Sbjct: 29 LAIDQGTTSTRAIVFDGNQKIAGVGQKEFKQHFPKSG--WVEHDPEEIWQTVVSTVKEAI 86
Query: 129 PVN--LRPLIASISIDGTSATTIIIDSNSGEPLWRPFLYNE 167
+ IA+I I T ++ D +G+P+ ++ +
Sbjct: 87 EKSGITANDIAAIGITNQRETVVVWDRETGKPIHNAIVWQD 127
>pdb|2DPN|A Chain A, Crystal Structure Of The Glycerol Kinase From Thermus
Thermophilus Hb8
pdb|2DPN|B Chain B, Crystal Structure Of The Glycerol Kinase From Thermus
Thermophilus Hb8
Length = 495
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 74 LGMDFGTSGARFAIINKDGTILSEGKKE----YPKFTTEESIDWLRSWKVTLFSLLEAVP 129
L +D GT+ +R + +G ++ K+E YPK E D L W+ TL++ E +
Sbjct: 5 LALDQGTTSSRAILFTLEGRPVAVAKREFRQLYPKPGWVEH-DPLEIWETTLWAAREVLR 63
Query: 130 VNLRPL--IASISIDGTSATTIIIDSNSGEPLWRPFLYNE 167
+ ++ I TT++ D +G+PL ++ +
Sbjct: 64 RAGAEAGEVLALGITNQRETTLLWDRKTGKPLHNAIVWQD 103
>pdb|3TNG|A Chain A, The Crystal Structure Of A Possible Phosphate
AcetylBUTARYL Transferase From Listeria Monocytogenes
Egd-E.
pdb|3U9E|A Chain A, The Crystal Structure Of A Possible Phosphate
AcetylBUTARYL Transferase (From Listeria Monocytogenes
Egd-E) In Complex With Coa.
pdb|3U9E|B Chain B, The Crystal Structure Of A Possible Phosphate
AcetylBUTARYL Transferase (From Listeria Monocytogenes
Egd-E) In Complex With Coa.
pdb|3UF6|A Chain A, The Crystal Structure Of A Possible Phosphate
AcetylBUTARYL Transferase (From Listeria Monocytogenes
Egd-E) In Complex With Cod (3'-Dephosphocoenzyme A)
pdb|3UF6|B Chain B, The Crystal Structure Of A Possible Phosphate
AcetylBUTARYL Transferase (From Listeria Monocytogenes
Egd-E) In Complex With Cod (3'-Dephosphocoenzyme A)
Length = 291
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 84 RFAIINKDGTILSEGKKEYPKFTTEESIDWLRS 116
R A+ K G L GKKE T ES+ W+++
Sbjct: 36 RLALKQKLGKFLLFGKKEDKTLTANESVTWIQT 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,472,901
Number of Sequences: 62578
Number of extensions: 295843
Number of successful extensions: 679
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 667
Number of HSP's gapped (non-prelim): 22
length of query: 333
length of database: 14,973,337
effective HSP length: 99
effective length of query: 234
effective length of database: 8,778,115
effective search space: 2054078910
effective search space used: 2054078910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)