Query 037497
Match_columns 333
No_of_seqs 232 out of 1397
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 12:53:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037497.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037497hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00370 FGGY_N: FGGY family o 100.0 2.8E-50 6E-55 370.8 16.4 228 72-302 1-245 (245)
2 PRK10331 L-fuculokinase; Provi 100.0 2.4E-48 5.2E-53 389.7 21.1 232 71-305 2-250 (470)
3 COG1070 XylB Sugar (pentulose 100.0 3.2E-48 7E-53 391.6 22.1 239 68-309 1-258 (502)
4 TIGR01314 gntK_FGGY gluconate 100.0 1.8E-47 3.9E-52 386.5 22.1 244 72-318 1-264 (505)
5 TIGR02628 fuculo_kin_coli L-fu 100.0 1.9E-47 4.2E-52 382.7 20.2 231 72-305 2-249 (465)
6 PRK15027 xylulokinase; Provisi 100.0 3.2E-47 6.8E-52 382.9 21.3 232 72-307 1-245 (484)
7 PRK10939 autoinducer-2 (AI-2) 100.0 5.7E-46 1.2E-50 376.9 21.1 232 71-307 3-255 (520)
8 PRK00047 glpK glycerol kinase; 100.0 9.4E-46 2E-50 373.4 20.4 243 69-317 3-272 (498)
9 PTZ00294 glycerol kinase-like 100.0 2E-45 4.3E-50 371.6 20.8 232 71-307 2-259 (504)
10 PLN02669 xylulokinase 100.0 8.2E-45 1.8E-49 370.4 20.7 263 70-333 7-324 (556)
11 PLN02295 glycerol kinase 100.0 1E-44 2.2E-49 367.0 18.9 227 72-305 1-259 (512)
12 TIGR01234 L-ribulokinase L-rib 100.0 2.8E-44 6E-49 365.7 20.4 233 72-307 2-282 (536)
13 PRK04123 ribulokinase; Provisi 100.0 5.1E-44 1.1E-48 364.7 21.3 233 70-305 2-284 (548)
14 TIGR01315 5C_CHO_kinase FGGY-f 100.0 2.1E-44 4.5E-49 366.9 17.4 230 72-305 1-265 (541)
15 TIGR01311 glycerol_kin glycero 100.0 1E-43 2.2E-48 358.2 19.1 230 71-307 1-253 (493)
16 TIGR01312 XylB D-xylulose kina 100.0 3.9E-43 8.5E-48 352.2 19.8 244 74-320 1-265 (481)
17 COG0554 GlpK Glycerol kinase [ 100.0 4.7E-43 1E-47 339.7 14.3 234 70-309 4-259 (499)
18 TIGR02627 rhamnulo_kin rhamnul 100.0 4.1E-42 8.8E-47 343.3 16.5 224 74-307 1-243 (454)
19 COG1069 AraB Ribulose kinase [ 100.0 9.1E-37 2E-41 299.6 16.4 248 70-324 2-281 (544)
20 PRK10640 rhaB rhamnulokinase; 100.0 2.8E-35 6E-40 295.4 18.8 212 86-307 3-231 (471)
21 KOG2517 Ribulose kinase and re 100.0 1.1E-30 2.3E-35 258.4 15.4 232 70-306 5-266 (516)
22 KOG2531 Sugar (pentulose and h 99.9 2.7E-23 5.8E-28 200.0 16.6 261 71-333 9-323 (545)
23 TIGR00241 CoA_E_activ CoA-subs 98.5 5E-07 1.1E-11 83.6 7.9 70 72-151 1-70 (248)
24 PRK13311 N-acetyl-D-glucosamin 98.3 4.2E-06 9.1E-11 77.7 11.3 93 72-178 1-94 (256)
25 PRK09698 D-allose kinase; Prov 98.3 7.6E-06 1.7E-10 77.5 11.3 88 70-168 3-94 (302)
26 PRK09557 fructokinase; Reviewe 98.2 7.2E-06 1.6E-10 77.8 10.5 83 72-166 1-83 (301)
27 PRK13310 N-acetyl-D-glucosamin 98.2 8.7E-06 1.9E-10 77.2 10.6 84 73-168 2-86 (303)
28 COG1940 NagC Transcriptional r 98.1 2.4E-05 5.2E-10 74.5 10.3 87 70-167 5-94 (314)
29 PF00480 ROK: ROK family; Int 98.0 3.3E-05 7.2E-10 67.2 9.8 89 75-179 1-90 (179)
30 TIGR00744 ROK_glcA_fam ROK fam 98.0 3.9E-05 8.5E-10 73.1 10.0 83 74-168 1-87 (318)
31 PRK12408 glucokinase; Provisio 97.8 4.6E-05 1E-09 73.7 7.8 78 72-168 17-100 (336)
32 PRK00292 glk glucokinase; Prov 97.8 7.3E-05 1.6E-09 71.5 8.5 80 71-168 2-82 (316)
33 smart00732 YqgFc Likely ribonu 97.8 7.8E-05 1.7E-09 58.5 7.2 60 72-145 2-61 (99)
34 PRK05082 N-acetylmannosamine k 97.8 0.00017 3.8E-09 67.9 10.4 83 73-169 3-87 (291)
35 PRK14101 bifunctional glucokin 97.6 0.00012 2.6E-09 76.8 6.6 77 72-166 19-95 (638)
36 TIGR03192 benz_CoA_bzdQ benzoy 97.5 0.00051 1.1E-08 65.0 8.7 68 72-149 33-101 (293)
37 PRK13318 pantothenate kinase; 97.5 0.00054 1.2E-08 63.8 8.6 63 73-143 2-64 (258)
38 PRK13321 pantothenate kinase; 97.4 0.00048 1E-08 64.1 8.2 63 73-143 2-64 (256)
39 TIGR03286 methan_mark_15 putat 97.2 0.0011 2.3E-08 65.3 8.1 71 70-150 143-213 (404)
40 COG2971 Predicted N-acetylgluc 97.2 0.00076 1.7E-08 63.7 6.4 31 69-99 3-33 (301)
41 PF01869 BcrAD_BadFG: BadF/Bad 97.2 0.001 2.3E-08 62.0 7.2 67 74-144 1-70 (271)
42 TIGR02261 benz_CoA_red_D benzo 96.9 0.0049 1.1E-07 57.6 9.0 71 72-148 2-74 (262)
43 COG1924 Activator of 2-hydroxy 96.9 0.0032 6.9E-08 61.0 8.0 71 69-149 133-203 (396)
44 TIGR02259 benz_CoA_red_A benzo 96.6 0.0032 7E-08 61.7 5.5 33 71-103 2-34 (432)
45 PF05378 Hydant_A_N: Hydantoin 96.6 0.0064 1.4E-07 53.5 6.8 73 74-153 2-74 (176)
46 TIGR00749 glk glucokinase, pro 96.5 0.0053 1.1E-07 58.8 6.2 77 74-166 1-79 (316)
47 PF14574 DUF4445: Domain of un 96.1 0.015 3.2E-07 57.8 7.0 73 72-144 2-92 (412)
48 PTZ00288 glucokinase 1; Provis 96.1 0.048 1.1E-06 54.2 10.4 71 69-144 24-101 (405)
49 smart00842 FtsA Cell division 96.0 0.041 8.8E-07 48.5 8.9 80 73-153 1-84 (187)
50 PF00349 Hexokinase_1: Hexokin 96.0 0.034 7.3E-07 50.2 8.1 69 72-142 64-138 (206)
51 PRK15080 ethanolamine utilizat 95.8 0.052 1.1E-06 50.8 8.8 71 70-141 23-93 (267)
52 PRK09472 ftsA cell division pr 95.5 0.09 2E-06 52.4 10.0 78 70-148 7-88 (420)
53 TIGR01174 ftsA cell division p 95.4 0.088 1.9E-06 51.4 9.3 79 73-152 2-84 (371)
54 TIGR03123 one_C_unchar_1 proba 94.5 0.078 1.7E-06 51.0 5.9 62 74-144 1-62 (318)
55 PRK13324 pantothenate kinase; 93.6 0.36 7.9E-06 45.1 8.5 65 73-144 2-66 (258)
56 TIGR02529 EutJ ethanolamine ut 93.5 0.21 4.5E-06 46.0 6.6 69 75-144 1-69 (239)
57 PRK13317 pantothenate kinase; 93.3 0.1 2.2E-06 49.3 4.2 27 71-97 2-28 (277)
58 PLN02914 hexokinase 93.3 0.3 6.6E-06 49.7 7.9 59 72-131 96-157 (490)
59 TIGR02707 butyr_kinase butyrat 93.2 0.24 5.2E-06 48.3 6.8 66 73-140 2-70 (351)
60 KOG1794 N-Acetylglucosamine ki 92.8 0.47 1E-05 44.9 7.7 72 70-145 2-77 (336)
61 PF11104 PilM_2: Type IV pilus 92.3 0.52 1.1E-05 45.5 7.8 69 75-145 1-73 (340)
62 PLN02596 hexokinase-like 92.3 0.35 7.5E-06 49.3 6.8 58 72-130 97-157 (490)
63 PLN02405 hexokinase 92.0 0.44 9.6E-06 48.6 7.1 58 72-130 96-156 (497)
64 TIGR01175 pilM type IV pilus a 91.8 1.4 2.9E-05 42.4 10.1 72 71-144 3-78 (348)
65 PRK13320 pantothenate kinase; 91.8 0.79 1.7E-05 42.4 8.1 55 72-144 3-57 (244)
66 PF13941 MutL: MutL protein 91.8 0.67 1.4E-05 46.8 8.0 31 73-103 2-35 (457)
67 COG4820 EutJ Ethanolamine util 91.5 0.51 1.1E-05 42.5 6.1 30 70-99 28-57 (277)
68 TIGR00555 panK_eukar pantothen 91.4 0.8 1.7E-05 43.3 7.7 58 73-145 2-59 (279)
69 TIGR00671 baf pantothenate kin 91.4 0.89 1.9E-05 42.0 7.9 56 74-143 2-57 (243)
70 PLN02362 hexokinase 91.4 0.45 9.9E-06 48.7 6.5 59 72-131 96-157 (509)
71 PRK13326 pantothenate kinase; 90.7 1.1 2.4E-05 41.9 8.0 59 72-144 7-65 (262)
72 COG3734 DgoK 2-keto-3-deoxy-ga 90.6 0.37 8.1E-06 45.3 4.5 33 68-100 2-34 (306)
73 PTZ00107 hexokinase; Provision 90.6 0.57 1.2E-05 47.4 6.2 59 72-130 75-142 (464)
74 COG4972 PilM Tfp pilus assembl 90.3 0.72 1.6E-05 44.4 6.2 59 72-130 11-73 (354)
75 PF02685 Glucokinase: Glucokin 88.9 1 2.3E-05 43.3 6.3 77 74-166 1-80 (316)
76 COG0849 ftsA Cell division ATP 87.3 3.6 7.8E-05 41.2 9.2 75 72-147 7-85 (418)
77 PRK13331 pantothenate kinase; 86.7 2.9 6.2E-05 39.0 7.6 58 72-144 8-65 (251)
78 COG0145 HyuA N-methylhydantoin 86.6 2.4 5.3E-05 44.9 8.0 32 71-102 2-33 (674)
79 COG1521 Pantothenate kinase ty 86.1 2.3 4.9E-05 39.6 6.6 62 73-144 2-63 (251)
80 PRK10854 exopolyphosphatase; P 83.0 4.3 9.3E-05 41.7 7.7 74 71-145 11-93 (513)
81 PF07318 DUF1464: Protein of u 82.5 1.9 4E-05 41.9 4.5 57 75-145 1-58 (343)
82 COG4020 Uncharacterized protei 80.7 3.7 8E-05 38.3 5.5 26 71-96 3-28 (332)
83 PLN02666 5-oxoprolinase 80.6 6.5 0.00014 44.7 8.5 70 70-145 8-86 (1275)
84 PTZ00340 O-sialoglycoprotein e 79.7 5.8 0.00013 38.7 6.9 71 72-143 2-78 (345)
85 COG1548 Predicted transcriptio 78.9 4.1 8.8E-05 38.1 5.2 30 72-103 4-33 (330)
86 PRK03011 butyrate kinase; Prov 78.7 3.6 7.8E-05 40.3 5.2 31 72-103 3-33 (358)
87 COG5026 Hexokinase [Carbohydra 78.6 3.9 8.4E-05 40.9 5.3 57 71-130 75-135 (466)
88 COG3894 Uncharacterized metal- 78.1 3 6.4E-05 42.4 4.4 34 70-103 163-197 (614)
89 PF14450 FtsA: Cell division p 76.3 5.6 0.00012 32.3 5.0 55 73-128 1-59 (120)
90 PRK09604 UGMP family protein; 75.4 9.9 0.00021 36.7 7.2 71 72-143 2-80 (332)
91 PRK00290 dnaK molecular chaper 75.2 2.7 5.8E-05 44.2 3.4 19 72-90 3-21 (627)
92 PTZ00009 heat shock 70 kDa pro 74.0 3.5 7.6E-05 43.6 3.9 23 68-90 1-23 (653)
93 PF05035 DGOK: 2-keto-3-deoxy- 73.9 2.6 5.7E-05 40.0 2.7 27 77-103 1-27 (287)
94 PF01548 DEDD_Tnp_IS110: Trans 73.4 8.3 0.00018 31.9 5.4 30 73-102 1-30 (144)
95 TIGR03725 bact_YeaZ universal 72.9 9.2 0.0002 34.1 5.9 62 73-143 1-62 (202)
96 PF03309 Pan_kinase: Type III 72.8 12 0.00026 33.4 6.6 20 73-92 1-20 (206)
97 TIGR03706 exo_poly_only exopol 72.4 9.2 0.0002 36.3 6.1 31 73-103 2-35 (300)
98 PRK09605 bifunctional UGMP fam 72.1 15 0.00032 37.7 8.0 71 72-143 2-77 (535)
99 COG0837 Glk Glucokinase [Carbo 71.5 12 0.00026 35.8 6.4 23 71-94 7-30 (320)
100 KOG1369 Hexokinase [Carbohydra 70.7 9.6 0.00021 38.7 6.0 90 72-168 87-182 (474)
101 CHL00094 dnaK heat shock prote 70.2 4.2 9E-05 42.7 3.5 21 72-93 3-23 (621)
102 PTZ00186 heat shock 70 kDa pre 69.6 5.3 0.00012 42.3 4.1 21 71-91 27-47 (657)
103 PF00871 Acetate_kinase: Aceto 68.9 19 0.00041 35.7 7.5 28 73-100 2-30 (388)
104 PRK13410 molecular chaperone D 68.5 5.1 0.00011 42.6 3.7 22 71-93 2-23 (668)
105 PF04312 DUF460: Protein of un 68.4 16 0.00035 30.8 5.9 29 71-100 32-60 (138)
106 PRK13411 molecular chaperone D 67.6 5.2 0.00011 42.3 3.6 21 72-93 3-23 (653)
107 COG0443 DnaK Molecular chapero 67.2 5.3 0.00012 41.7 3.5 22 71-92 5-26 (579)
108 PRK11678 putative chaperone; P 66.8 4.6 9.9E-05 40.8 2.8 20 73-93 2-21 (450)
109 PRK11031 guanosine pentaphosph 66.3 18 0.00039 36.9 7.1 75 70-145 5-88 (496)
110 PRK00976 hypothetical protein; 65.9 16 0.00034 35.4 6.1 18 72-89 2-19 (326)
111 TIGR00329 gcp_kae1 metallohydr 65.3 14 0.00031 35.1 5.8 69 74-143 1-77 (305)
112 PRK00039 ruvC Holliday junctio 64.7 43 0.00094 29.0 8.2 22 72-93 3-24 (164)
113 TIGR03722 arch_KAE1 universal 63.5 20 0.00043 34.4 6.4 69 74-143 1-74 (322)
114 TIGR02350 prok_dnaK chaperone 63.4 6.4 0.00014 41.0 3.2 18 73-90 2-19 (595)
115 PRK12440 acetate kinase; Revie 63.3 12 0.00026 37.1 4.9 31 68-98 1-32 (397)
116 PF00012 HSP70: Hsp70 protein; 62.8 5.5 0.00012 41.2 2.6 19 73-91 1-19 (602)
117 PRK07058 acetate kinase; Provi 62.6 12 0.00027 37.1 4.8 31 68-98 1-34 (396)
118 PRK00109 Holliday junction res 61.9 44 0.00096 28.0 7.5 59 72-144 5-63 (138)
119 COG0248 GppA Exopolyphosphatas 61.4 8.6 0.00019 39.3 3.6 75 71-145 3-85 (492)
120 TIGR01319 glmL_fam conserved h 61.0 22 0.00048 36.0 6.4 29 76-104 1-30 (463)
121 PRK05183 hscA chaperone protei 60.6 8 0.00017 40.7 3.3 20 71-90 19-38 (616)
122 TIGR03723 bact_gcp putative gl 60.5 24 0.00053 33.8 6.4 71 73-144 1-79 (314)
123 TIGR03281 methan_mark_12 putat 59.4 5.9 0.00013 37.9 1.9 23 73-95 1-23 (326)
124 PRK13322 pantothenate kinase; 59.4 8.2 0.00018 35.7 2.8 24 73-96 2-25 (246)
125 PF02075 RuvC: Crossover junct 58.6 35 0.00075 29.0 6.4 23 73-95 1-23 (149)
126 PTZ00400 DnaK-type molecular c 57.5 9.9 0.00021 40.3 3.4 19 72-90 42-60 (663)
127 TIGR01865 cas_Csn1 CRISPR-asso 56.6 8.8 0.00019 41.7 2.9 23 71-93 1-23 (805)
128 COG1214 Inactive homolog of me 56.0 27 0.00059 31.7 5.6 64 72-143 2-66 (220)
129 PF14639 YqgF: Holliday-juncti 55.5 60 0.0013 27.7 7.3 30 71-100 5-38 (150)
130 PRK13328 pantothenate kinase; 54.9 13 0.00029 34.5 3.5 24 73-96 3-26 (255)
131 PLN03184 chloroplast Hsp70; Pr 54.4 12 0.00026 39.8 3.4 19 72-90 40-58 (673)
132 PRK01433 hscA chaperone protei 54.3 13 0.00028 38.9 3.6 20 71-90 19-38 (595)
133 cd00529 RuvC_resolvase Hollida 54.2 71 0.0015 27.1 7.6 21 73-93 2-22 (154)
134 KOG2707 Predicted metalloprote 53.5 14 0.00031 36.0 3.5 75 73-149 34-116 (405)
135 TIGR00904 mreB cell shape dete 53.3 10 0.00022 36.3 2.6 19 74-93 5-23 (333)
136 PF03652 UPF0081: Uncharacteri 52.2 31 0.00068 28.8 5.0 65 72-157 2-66 (135)
137 TIGR01991 HscA Fe-S protein as 51.7 11 0.00025 39.3 2.8 18 73-90 1-18 (599)
138 COG0816 Predicted endonuclease 49.6 54 0.0012 27.8 6.0 60 71-144 2-62 (141)
139 COG2183 Tex Transcriptional ac 49.1 31 0.00067 37.1 5.3 68 68-144 327-395 (780)
140 PRK14878 UGMP family protein; 49.1 44 0.00095 32.1 6.1 68 74-143 1-73 (323)
141 PRK13928 rod shape-determining 47.6 13 0.00027 35.8 2.1 15 74-88 6-20 (336)
142 COG4012 Uncharacterized protei 46.1 62 0.0013 30.6 6.2 48 72-127 228-275 (342)
143 COG2441 Predicted butyrate kin 46.0 28 0.0006 33.1 4.0 62 74-145 1-64 (374)
144 PRK07157 acetate kinase; Provi 44.4 34 0.00074 34.1 4.6 26 73-98 5-31 (400)
145 KOG1385 Nucleoside phosphatase 44.2 29 0.00063 34.7 4.0 61 70-130 66-132 (453)
146 TIGR00016 ackA acetate kinase. 41.5 43 0.00094 33.4 4.8 27 72-98 5-33 (404)
147 PF08735 DUF1786: Putative pyr 40.3 84 0.0018 29.4 6.2 48 71-126 167-214 (254)
148 PRK13325 bifunctional biotin-- 40.2 39 0.00084 35.5 4.5 24 72-96 339-362 (592)
149 PF14397 ATPgrasp_ST: Sugar-tr 39.4 1.9E+02 0.0041 27.2 8.7 70 70-156 175-248 (285)
150 PRK12397 propionate kinase; Re 39.2 46 0.001 33.2 4.6 30 68-98 1-31 (404)
151 TIGR00228 ruvC crossover junct 37.9 1.1E+02 0.0023 26.5 6.1 22 73-94 1-22 (156)
152 TIGR00250 RNAse_H_YqgF RNAse H 37.5 47 0.001 27.5 3.8 56 74-143 1-56 (130)
153 PRK13329 pantothenate kinase; 36.2 31 0.00067 32.0 2.8 18 73-90 3-20 (249)
154 PRK13930 rod shape-determining 35.1 25 0.00055 33.4 2.1 15 74-88 11-25 (335)
155 PRK13929 rod-share determining 34.3 38 0.00083 32.5 3.2 13 73-85 6-18 (335)
156 COG3513 Predicted CRISPR-assoc 33.5 36 0.00078 36.8 3.0 24 68-91 1-24 (1088)
157 PRK10719 eutA reactivating fac 32.7 96 0.0021 31.6 5.7 33 286-318 299-331 (475)
158 PF06723 MreB_Mbl: MreB/Mbl pr 32.4 24 0.00053 34.1 1.5 35 268-306 284-318 (326)
159 PRK12379 propionate/acetate ki 31.9 79 0.0017 31.5 4.9 29 71-99 5-34 (396)
160 COG3490 Uncharacterized protei 31.2 2.9E+02 0.0064 26.6 8.3 81 80-162 225-318 (366)
161 TIGR03192 benz_CoA_bzdQ benzoy 31.0 56 0.0012 31.2 3.6 25 72-96 126-150 (293)
162 PRK13927 rod shape-determining 30.8 31 0.00067 32.9 1.9 15 73-87 7-21 (334)
163 TIGR02261 benz_CoA_red_D benzo 29.9 63 0.0014 30.3 3.7 23 74-96 100-122 (262)
164 PF06277 EutA: Ethanolamine ut 29.6 1.2E+02 0.0026 31.0 5.8 41 284-325 295-335 (473)
165 PF04848 Pox_A22: Poxvirus A22 29.3 1E+02 0.0022 26.2 4.6 25 72-96 2-26 (143)
166 PRK11031 guanosine pentaphosph 26.6 2.3E+02 0.0051 28.9 7.5 31 73-104 134-164 (496)
167 PF01968 Hydantoinase_A: Hydan 25.2 72 0.0016 30.1 3.3 23 72-95 78-100 (290)
168 PF12864 DUF3822: Protein of u 25.0 3.6E+02 0.0078 24.6 7.9 75 70-151 17-94 (253)
169 TIGR03123 one_C_unchar_1 proba 24.8 78 0.0017 30.6 3.4 24 73-97 130-153 (318)
170 COG0533 QRI7 Metal-dependent p 22.6 2.1E+02 0.0046 27.9 5.9 75 72-149 2-84 (342)
171 PF13756 Stimulus_sens_1: Stim 21.1 93 0.002 25.1 2.7 24 79-102 15-38 (112)
172 KOG1386 Nucleoside phosphatase 20.9 3.7E+02 0.0081 27.6 7.4 63 68-130 6-76 (501)
173 COG5146 PanK Pantothenate kina 20.3 1.9E+02 0.004 27.1 4.7 16 72-87 19-34 (342)
No 1
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=100.00 E-value=2.8e-50 Score=370.77 Aligned_cols=228 Identities=23% Similarity=0.365 Sum_probs=203.5
Q ss_pred eEEEEEeCccCceEEEEeCCCcEEEEEEEeecCcCC--ccccccHHHHHHHHHHHHHhchhc---CCCCccEEEEecCCc
Q 037497 72 LYLGMDFGTSGARFAIINKDGTILSEGKKEYPKFTT--EESIDWLRSWKVTLFSLLEAVPVN---LRPLIASISIDGTSA 146 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~p--g~~e~d~~~~~~~i~~~l~~l~~~---~~~~I~aIgis~~~~ 146 (333)
|+||||+|||++|++|+|++|++++..+++++...+ |+.++|+++||+.+.++++++.++ ...+|.+|+++++++
T Consensus 1 y~lgiDiGTts~K~~l~d~~g~iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~I~aI~is~~~~ 80 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDEDGKIVASASRPYPYYTPEPGWAEQDPDEIWEAICEALKELLSQAGIDPEQIKAIGISGQGH 80 (245)
T ss_dssp EEEEEEECSSEEEEEEEETTSCEEEEEEEEETEBCSSTTEEEE-HHHHHHHHHHHHHHHHHHCTSCGGGEEEEEEEE-SS
T ss_pred CEEEEEEcccceEEEEEeCCCCEEEEEEEeeeeccccccccccChHHHHHHHHHHHHHHHhhcCcccceeEEEEeccccC
Confidence 799999999999999999999999999999987764 778999999999999999988764 357899999999999
Q ss_pred eEEEEeCCCCccccCCcccCCChH-HHHHHHHH------hccCCCCCCCChhHHHHHHHHHHHcCcc--cccceeeehHH
Q 037497 147 TTIIIDSNSGEPLWRPFLYNESCP-DALPVVKS------IAPANHTVCSGTSTLCKLVSWWNTEGEN--RESALLLHQAD 217 (333)
Q Consensus 147 s~v~vD~~~G~pl~p~i~W~D~R~-~~~~~l~~------~~~~~g~~~~~~~~l~kll~Wl~~~~Pe--~k~~~~l~~~d 217 (333)
+++++|+ +|+|++|+++|+|.|+ ++++++.+ +++.+|.++++.++++||+ ||++|+|+ +++++|+++.|
T Consensus 81 ~~v~~D~-~~~pl~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~-wl~~~~p~~~~~~~~~~~~~d 158 (245)
T PF00370_consen 81 GLVLLDK-DGKPLRPAILWMDTRAAEEAEELNEEGSPEEIYEKTGLPLSPGYPLAKLL-WLKENEPEIFEKAAKFLTLSD 158 (245)
T ss_dssp EEEEEET-TSSBSSCEE-TT-CTTHHHHHHHHHHTHHHHHHHHHSS-SSTTSHHHHHH-HHHHHSHHHHHHHHEEEEHHH
T ss_pred Ccceecc-ccccccccccccccchhhHHHHHHhhcCcceeeeeccccccccchHHHHH-HHHHhCchhhhhhhhcccHHH
Confidence 9999999 9999999999999994 67776643 4567888889999999999 99999999 99999999999
Q ss_pred HHHHHHhcccceeehhhhhhcC-ccCCCCCCChHhhCC--CcCCCCCCCcCCCccccccCHHHHHHhCCCCCceEEEcCc
Q 037497 218 WLLWLLHGKLGLSDYNNALKVG-YDPELESYPPWLLSQ--PYSQLLPSVQAPGTSIGYLKEGIRTEFGMFLFHLTCHWWK 294 (333)
Q Consensus 218 yl~~~LTG~~~~~d~S~As~tg-~d~~~~~W~~~ll~~--~~~~~LP~vv~~g~~iG~l~~~~A~~~GL~~g~pV~~G~~ 294 (333)
||.|+|||+.+ +|+|+|+++| ||+++++|++++++. ++.++||+|+++++++|++++++|+++||++|+||++|++
T Consensus 159 yl~~~LtG~~~-~d~s~as~tgl~d~~~~~w~~~~l~~~gi~~~~lP~i~~~g~~~G~~~~~~a~~~Gl~~~~pV~~g~~ 237 (245)
T PF00370_consen 159 YLAYKLTGRAA-TDYSNASRTGLYDIRTGQWDEELLEALGIPEELLPEIVPPGEIIGTLTPEAAKELGLPEGTPVIAGGG 237 (245)
T ss_dssp HHHHHHHSC-E-EEHHHHCTSSSEETTTTEE-HHHHHHTTSGGGGSCEEE-TTSEEEEEEHHHHHHHTSTTTEEEEEEEE
T ss_pred HHHhhcccccc-ccccchhccccccccccccCHHHHHhhCCChhhCCcEecCCCeeEEECHHHHHHhCCCCCCEEEEEch
Confidence 99999999998 9999999999 999999999999985 5678999999999999999999999999999999999999
Q ss_pred chHHhhhh
Q 037497 295 PTEHQTIV 302 (333)
Q Consensus 295 D~~aa~~g 302 (333)
|++|+++|
T Consensus 238 D~~aa~lG 245 (245)
T PF00370_consen 238 DQAAAALG 245 (245)
T ss_dssp HHHHHHHH
T ss_pred HHHHhhcC
Confidence 99999887
No 2
>PRK10331 L-fuculokinase; Provisional
Probab=100.00 E-value=2.4e-48 Score=389.74 Aligned_cols=232 Identities=15% Similarity=0.176 Sum_probs=211.9
Q ss_pred ceEEEEEeCccCceEEEEeCCCcEEEEEEEeecC--cC--CccccccHHHHHHHHHHHHHhchhc-CCCCccEEEEecCC
Q 037497 71 RLYLGMDFGTSGARFAIINKDGTILSEGKKEYPK--FT--TEESIDWLRSWKVTLFSLLEAVPVN-LRPLIASISIDGTS 145 (333)
Q Consensus 71 ~~~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~--~~--pg~~e~d~~~~~~~i~~~l~~l~~~-~~~~I~aIgis~~~ 145 (333)
+|+||||+|||++|++|||.+|++++..+.+++. .. ||+.|||+++||+.++++++++..+ ...+|.+||+++|+
T Consensus 2 ~~~lgID~GTt~~Ka~l~d~~G~~~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~~~~~~~~I~~I~is~~~ 81 (470)
T PRK10331 2 DVILVLDCGATNVRAIAVDRQGKIVARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQINSELTECHIRGITVTTFG 81 (470)
T ss_pred ceEEEEecCCCceEEEEEcCCCcEEEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHhCCccceEEEEEeccc
Confidence 4899999999999999999999999999988763 22 5789999999999999999998754 34569999999999
Q ss_pred ceEEEEeCCCCccccCCcccCCChH-HHHHHHHH------hccCCCCCCCChhHHHHHHHHHHHcCcc--cccceeeehH
Q 037497 146 ATTIIIDSNSGEPLWRPFLYNESCP-DALPVVKS------IAPANHTVCSGTSTLCKLVSWWNTEGEN--RESALLLHQA 216 (333)
Q Consensus 146 ~s~v~vD~~~G~pl~p~i~W~D~R~-~~~~~l~~------~~~~~g~~~~~~~~l~kll~Wl~~~~Pe--~k~~~~l~~~ 216 (333)
++++++|+ +|+|++|+|+|+|.|+ ++++++.+ ++..+|..+.+.++++||+ |+++|+|+ ++++++++++
T Consensus 82 ~~~v~~D~-~G~pl~p~i~w~D~Ra~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~Kl~-Wl~~~~P~~~~~~~~~l~~~ 159 (470)
T PRK10331 82 VDGALVDK-QGNLLYPIISWKCPRTAAVMENIERYISAQQLQQISGVGAFSFNTLYKLV-WLKENHPQLLEQAHAWLFIS 159 (470)
T ss_pred cceEEECC-CcCCccCceeecCCCcHHHHHHHHHhcCHHHHHhhhCCCccccchHHHHH-HHHHhCHHHHHHhhhhcCHH
Confidence 99999999 9999999999999994 67777653 3456788777888999999 99999999 9999999999
Q ss_pred HHHHHHHhcccceeehhhhhhcC-ccCCCCCCChHhhCC--CcCCCCCCCcCCCccccccCHHHHHHhCCCCCceEEEcC
Q 037497 217 DWLLWLLHGKLGLSDYNNALKVG-YDPELESYPPWLLSQ--PYSQLLPSVQAPGTSIGYLKEGIRTEFGMFLFHLTCHWW 293 (333)
Q Consensus 217 dyl~~~LTG~~~~~d~S~As~tg-~d~~~~~W~~~ll~~--~~~~~LP~vv~~g~~iG~l~~~~A~~~GL~~g~pV~~G~ 293 (333)
|||.|+|||+.+ +|+|+|++++ ||+++++|++++++. +++++||+|+++++++|+|++++|+++||++|+||++|+
T Consensus 160 dyl~~~LTG~~~-~d~s~As~t~l~d~~~~~W~~ell~~~gi~~~~lP~i~~~g~~~G~v~~~~a~~~GL~~g~pV~~g~ 238 (470)
T PRK10331 160 SLINHRLTGEFT-TDITMAGTSQMLDIQQRDFSPEILQATGLSRRLFPRLVEAGEQIGTLQPSAAALLGLPVGIPVISAG 238 (470)
T ss_pred HHHHHhhcCccc-cchhhccceeeeecccCCCCHHHHHHcCCCHHHCCCcccccccccccCHHHHHHhCCCCCCeEEEcc
Confidence 999999999998 9999999999 999999999999986 567899999999999999999999999999999999999
Q ss_pred cchHHhhhhhcc
Q 037497 294 KPTEHQTIVFLC 305 (333)
Q Consensus 294 ~D~~aa~~g~g~ 305 (333)
+|++|+++|+|+
T Consensus 239 ~D~~aa~~g~g~ 250 (470)
T PRK10331 239 HDTQFALFGSGA 250 (470)
T ss_pred ccHHHHHhCCCC
Confidence 999999999996
No 3
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.2e-48 Score=391.60 Aligned_cols=239 Identities=20% Similarity=0.262 Sum_probs=218.1
Q ss_pred cCCceEEEEEeCccCceEEEEeCC-CcEEEEEEEeecCcC--CccccccHHHHHHHHHHHHHhchhc---CCCCccEEEE
Q 037497 68 VGERLYLGMDFGTSGARFAIINKD-GTILSEGKKEYPKFT--TEESIDWLRSWKVTLFSLLEAVPVN---LRPLIASISI 141 (333)
Q Consensus 68 M~~~~~lGIDiGTTsiKa~l~D~~-G~il~~~~~~~~~~~--pg~~e~d~~~~~~~i~~~l~~l~~~---~~~~I~aIgi 141 (333)
|+++|+||||+|||++|+++||.+ |++++..+..++..+ ||+.|+|+++||+.+.++++++..+ ...+|.+|||
T Consensus 1 ~~~~~~lgIDiGTt~~Kavl~d~~~~~~~~~~~~~~~~~~~~~g~~e~d~~~~w~~~~~ai~~l~~~~~~~~~~I~aI~i 80 (502)
T COG1070 1 MMMKYVLGIDIGTTSVKAVLFDEDGGEVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEESKIDPDAIAAIGI 80 (502)
T ss_pred CCccEEEEEEcCCCcEEEEEEeCCCCeEEEEeeccccccCCCCCCcccCHHHHHHHHHHHHHHHHHhcccChhhceEEEE
Confidence 456899999999999999999999 899999988888764 5899999999999999999998774 3467999999
Q ss_pred ecCCceEEEEeCCCCccccCCcccCCChH-HHHHHHHHh------ccCCCCCCCChhHHHHHHHHHHHcCcc--ccccee
Q 037497 142 DGTSATTIIIDSNSGEPLWRPFLYNESCP-DALPVVKSI------APANHTVCSGTSTLCKLVSWWNTEGEN--RESALL 212 (333)
Q Consensus 142 s~~~~s~v~vD~~~G~pl~p~i~W~D~R~-~~~~~l~~~------~~~~g~~~~~~~~l~kll~Wl~~~~Pe--~k~~~~ 212 (333)
++|+|+++++|+ +|+|++|+|+|+|.|+ ++++++++. +..++....+.++++||+ |+++|+|| +|++++
T Consensus 81 s~~~~g~vllD~-~g~~L~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~t~~~~~~~~t~~kL~-Wl~~~~P~~~~k~~~i 158 (502)
T COG1070 81 SGQGHGLVLLDA-NGEPLRPAILWNDTRAAEEVEELEERLGGEALYARTGLQAMPGFTAPKLL-WLKENEPDLFAKAAKI 158 (502)
T ss_pred eccccceEEECC-CCCCccccceecchhhHHHHHHHHhhccchhhhhhcCCCcCccccHHHHH-HHHhcCcHHHHhhhhe
Confidence 999999999999 9999999999999995 788888653 234777778888999999 99999999 999999
Q ss_pred eehHHHHHHHHhcccceeehhhhhhcC-ccCCCCCCChHhhCC--Cc-CCCCCCCcCCCccccccCHHHHHHhCCCCCce
Q 037497 213 LHQADWLLWLLHGKLGLSDYNNALKVG-YDPELESYPPWLLSQ--PY-SQLLPSVQAPGTSIGYLKEGIRTEFGMFLFHL 288 (333)
Q Consensus 213 l~~~dyl~~~LTG~~~~~d~S~As~tg-~d~~~~~W~~~ll~~--~~-~~~LP~vv~~g~~iG~l~~~~A~~~GL~~g~p 288 (333)
++++|||.|+|||+.+ +|+|+|+.|+ ||+++++|+.++++. +. .++||+|+++++++|+|++++|+++||++++|
T Consensus 159 l~~~dyl~~rLTG~~~-~e~s~as~t~l~d~~~~~w~~~~l~~~gl~~~~~lp~vv~~g~~~G~l~~e~A~~~Gl~~~~p 237 (502)
T COG1070 159 LLIKDYLRYRLTGEFA-TEISDASGTGLLDIRTRKWDWELLAALGLPERDLLPPVVEPGEVLGTLTPEAAEELGLPAGTP 237 (502)
T ss_pred echHHHHHHHHhCCcc-cccccccccccccccccccCHHHHHHcCCChHHhCCCccCccceeccccHHHHHHhCCCCCCe
Confidence 9999999999999998 9999999999 999999999999986 45 37999999999999999999999999999999
Q ss_pred EEEcCcchHHhhhhhcceeee
Q 037497 289 TCHWWKPTEHQTIVFLCICIV 309 (333)
Q Consensus 289 V~~G~~D~~aa~~g~g~~~~~ 309 (333)
|++|+||++++++|+|++..+
T Consensus 238 V~~G~~D~~~a~lg~g~~~~g 258 (502)
T COG1070 238 VVVGGGDNAAAALGAGAVDPG 258 (502)
T ss_pred EEECCchHHHHhccCCCcCCC
Confidence 999999999999999988644
No 4
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=100.00 E-value=1.8e-47 Score=386.50 Aligned_cols=244 Identities=17% Similarity=0.198 Sum_probs=218.4
Q ss_pred eEEEEEeCccCceEEEEeCCCcEEEEEEEeecCcC--CccccccHHHHHHHHHHHHHhchhcC--CCCccEEEEecCCce
Q 037497 72 LYLGMDFGTSGARFAIINKDGTILSEGKKEYPKFT--TEESIDWLRSWKVTLFSLLEAVPVNL--RPLIASISIDGTSAT 147 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~--pg~~e~d~~~~~~~i~~~l~~l~~~~--~~~I~aIgis~~~~s 147 (333)
|+||||+|||++|++|||.+|++++..+.+++... +|+.|+|+++||+.+.++++++..+. ..+|.+|||++|+++
T Consensus 1 ~~lgiDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~I~~Igis~~~~~ 80 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEENGKIVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIREVSINLEDEDEILFVSFSTQMHS 80 (505)
T ss_pred CEEEEeccccceEEEEEcCCCCEEEEEEeecccccCCCCCeeeCHHHHHHHHHHHHHHHHHhCCCcCceEEEEEecccce
Confidence 58999999999999999999999999999888544 57899999999999999999887641 256999999999999
Q ss_pred EEEEeCCCCccccCCcccCCChH-HHHHHHHH------hccCCCCCCCChhHHHHHHHHHHHcCcc--cccceeeehHHH
Q 037497 148 TIIIDSNSGEPLWRPFLYNESCP-DALPVVKS------IAPANHTVCSGTSTLCKLVSWWNTEGEN--RESALLLHQADW 218 (333)
Q Consensus 148 ~v~vD~~~G~pl~p~i~W~D~R~-~~~~~l~~------~~~~~g~~~~~~~~l~kll~Wl~~~~Pe--~k~~~~l~~~dy 218 (333)
+++||+ +|+|++|+++|+|.|+ ++++++.+ +++.+|..+++.++++||+ |+++|+|+ ++++++++++||
T Consensus 81 ~v~~D~-~g~pl~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~-Wl~~~~p~~~~~~~~~l~~~dy 158 (505)
T TIGR01314 81 LIAFDE-NWQPLTRLITWADNRAVKYAEQIKESKNGFDIYRRTGTPIHPMAPLSKII-WLEAEHPDIYQKAAKYLEIKGY 158 (505)
T ss_pred eEEECC-CcCCcccceeccccchHHHHHHHHhhcCHHHHHHHHCCCCCccchHHHHH-HHHHhChhHHHhhcEEECHHHH
Confidence 999999 9999999999999995 67777643 4567888889999999999 99999999 999999999999
Q ss_pred HHHHHhcccceeehhhhhhcC-ccCCCCCCChHhhCC--CcCCCCCCCcCCCccccccCHHHHHHhCCCCCceEEEcCcc
Q 037497 219 LLWLLHGKLGLSDYNNALKVG-YDPELESYPPWLLSQ--PYSQLLPSVQAPGTSIGYLKEGIRTEFGMFLFHLTCHWWKP 295 (333)
Q Consensus 219 l~~~LTG~~~~~d~S~As~tg-~d~~~~~W~~~ll~~--~~~~~LP~vv~~g~~iG~l~~~~A~~~GL~~g~pV~~G~~D 295 (333)
|.|+|||+.+ +|+|+|+++| ||+++++|++++++. +++++||+|+++++++|+|++++|+++||++|+||++|++|
T Consensus 159 l~~~LTG~~~-~d~s~As~t~l~d~~~~~W~~ell~~~gi~~~~lP~l~~~g~~iG~l~~~~a~~~GL~~g~pV~~g~~D 237 (505)
T TIGR01314 159 IFQRLFGTYK-IDYSTASATGMFNLFELDWDKEALELTGIKESQLPKLVPTTEIEENLPHEYAKKMGIQSSTPFVIGASD 237 (505)
T ss_pred HHHHHcCCce-eEhhhhhhhcceeCCCCCCCHHHHHhcCCCHHHCCCCcCcccccCCcCHHHHHHhCCCCCCeEEEeccH
Confidence 9999999988 9999999999 999999999999986 45789999999999999999999999999999999999999
Q ss_pred hHHhhhhhcceeee----ecCeEEEEE
Q 037497 296 TEHQTIVFLCICIV----INNKFSQIS 318 (333)
Q Consensus 296 ~~aa~~g~g~~~~~----i~g~~~~is 318 (333)
++|+++|+|++..+ ..|+...+.
T Consensus 238 ~~aa~~g~g~~~~g~~~~~~GTs~~~~ 264 (505)
T TIGR01314 238 GVLSNLGVNAIKKGEAAVTIGTSGAIR 264 (505)
T ss_pred HHHHHhcCCCCCCCcEEEEechhheee
Confidence 99999999986432 345544443
No 5
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=100.00 E-value=1.9e-47 Score=382.72 Aligned_cols=231 Identities=16% Similarity=0.181 Sum_probs=211.1
Q ss_pred eEEEEEeCccCceEEEEeCCCcEEEEEEEeec--Cc--CCccccccHHHHHHHHHHHHHhchhc-CCCCccEEEEecCCc
Q 037497 72 LYLGMDFGTSGARFAIINKDGTILSEGKKEYP--KF--TTEESIDWLRSWKVTLFSLLEAVPVN-LRPLIASISIDGTSA 146 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~--~~--~pg~~e~d~~~~~~~i~~~l~~l~~~-~~~~I~aIgis~~~~ 146 (333)
|+||||+|||++|++|||.+|++++..+.+++ .. .||+.|||+++||+.++++++++..+ ...+|.+||+++|++
T Consensus 2 ~ilgiD~GTss~K~~l~d~~g~~va~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~~~~~~I~aI~~s~~~~ 81 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINRQGKIVASASTPNATKQAIENNDYHIWDLEAIWQKLADCCQQINSELTEKHIRGIAVTTFGV 81 (465)
T ss_pred eEEEEecCCCcEEEEEEcCCCCEEEEEecccccCCCCCCCCceeeCHHHHHHHHHHHHHHHHhhcChhceEEEEEecccc
Confidence 78999999999999999999999999988866 22 35889999999999999999999753 345699999999999
Q ss_pred eEEEEeCCCCccccCCcccCCChH-HHHHHHHH------hccCCCCCCCChhHHHHHHHHHHHcCcc--cccceeeehHH
Q 037497 147 TTIIIDSNSGEPLWRPFLYNESCP-DALPVVKS------IAPANHTVCSGTSTLCKLVSWWNTEGEN--RESALLLHQAD 217 (333)
Q Consensus 147 s~v~vD~~~G~pl~p~i~W~D~R~-~~~~~l~~------~~~~~g~~~~~~~~l~kll~Wl~~~~Pe--~k~~~~l~~~d 217 (333)
+++++|+ +|+|++|+++|+|+|+ ++++++.+ +++.+|..+.+.++++||+ |+++|+|+ ++++++++++|
T Consensus 82 ~~v~~D~-~G~~l~p~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~-wl~~~~pe~~~~~~~~l~~~d 159 (465)
T TIGR02628 82 DGAPFDK-QGNQLYPIISWKCPRTAPVMDNIERLLDAQRLYAINGIGAYSFNTLYKLV-WLKEHHPQLFERMHKFVFISS 159 (465)
T ss_pred ceEEECC-CCCCccccccccCcccHHHHHHHHHhhCHHHHHHHhCCCccccchHHHHH-HHHHhChHHHHHHHHhhCcHH
Confidence 9999999 9999999999999994 67777653 4456788777888999999 99999999 99999999999
Q ss_pred HHHHHHhcccceeehhhhhhcC-ccCCCCCCChHhhCC--CcCCCCCCCcCCCccccccCHHHHHHhCCCCCceEEEcCc
Q 037497 218 WLLWLLHGKLGLSDYNNALKVG-YDPELESYPPWLLSQ--PYSQLLPSVQAPGTSIGYLKEGIRTEFGMFLFHLTCHWWK 294 (333)
Q Consensus 218 yl~~~LTG~~~~~d~S~As~tg-~d~~~~~W~~~ll~~--~~~~~LP~vv~~g~~iG~l~~~~A~~~GL~~g~pV~~G~~ 294 (333)
||.|+|||+.. +|+|+|+.++ ||+++++|++++++. +++++||+++++++++|+|++++|+++||++|+||++|++
T Consensus 160 yl~~~LTG~~~-~d~s~As~t~l~d~~~~~w~~ell~~~gi~~~~lP~l~~~~~~~G~v~~~~a~~~Gl~~g~pV~~g~~ 238 (465)
T TIGR02628 160 MITHRLTGEFT-TDITMAGTSMMTDLTQRNWSPQILQALGLSRRLFPPLVEAGEQIGTLQNSAAAMLGLPVGVPVISAGH 238 (465)
T ss_pred HHHHHHhCCcc-cchhhhhcceeeecCcCCCCHHHHHHcCCCHHHCCCcccCCccceeeCHHHHHHhCCCCCCCEEecCc
Confidence 99999999998 9999999999 999999999999986 4568999999999999999999999999999999999999
Q ss_pred chHHhhhhhcc
Q 037497 295 PTEHQTIVFLC 305 (333)
Q Consensus 295 D~~aa~~g~g~ 305 (333)
|++++++|+|+
T Consensus 239 D~~aa~~g~g~ 249 (465)
T TIGR02628 239 DTQFALFGSGA 249 (465)
T ss_pred cHHHHHhccCC
Confidence 99999999996
No 6
>PRK15027 xylulokinase; Provisional
Probab=100.00 E-value=3.2e-47 Score=382.92 Aligned_cols=232 Identities=16% Similarity=0.211 Sum_probs=213.2
Q ss_pred eEEEEEeCccCceEEEEeCCCcEEEEEEEeecCcC--CccccccHHHHHHHHHHHHHhchhc-CCCCccEEEEecCCceE
Q 037497 72 LYLGMDFGTSGARFAIINKDGTILSEGKKEYPKFT--TEESIDWLRSWKVTLFSLLEAVPVN-LRPLIASISIDGTSATT 148 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~--pg~~e~d~~~~~~~i~~~l~~l~~~-~~~~I~aIgis~~~~s~ 148 (333)
++||||+|||++|++|||.+|+++++.+.+++..+ |++.|||+++||++++++++++..+ ...+|.+||+++|++++
T Consensus 1 ~~lgID~GTts~Ka~l~d~~G~vva~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~~~~~~I~aI~is~q~~~~ 80 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNEQGEVVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQHSLQDVKALGIAGQMHGA 80 (484)
T ss_pred CEEEEEecccceEEEEEcCCCCEEEEEeecccccCCCCCccccCHHHHHHHHHHHHHHHHHhCCccceeEEEEecCCCce
Confidence 48999999999999999999999999999998654 4789999999999999999999764 34679999999999999
Q ss_pred EEEeCCCCccccCCcccCCChH-HHHHHHHHh----ccCCCCCCCChhHHHHHHHHHHHcCcc--cccceeeehHHHHHH
Q 037497 149 IIIDSNSGEPLWRPFLYNESCP-DALPVVKSI----APANHTVCSGTSTLCKLVSWWNTEGEN--RESALLLHQADWLLW 221 (333)
Q Consensus 149 v~vD~~~G~pl~p~i~W~D~R~-~~~~~l~~~----~~~~g~~~~~~~~l~kll~Wl~~~~Pe--~k~~~~l~~~dyl~~ 221 (333)
+++|+ +|+|++|+++|+|.|+ ++++++.+. +..+|.++++.++++||+ |+++|+|| +++++|++++|||+|
T Consensus 81 v~~D~-~g~~l~p~i~w~D~R~~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~-Wl~~~~Pe~~~~~~~~~~~~dyl~~ 158 (484)
T PRK15027 81 TLLDA-QQRVLRPAILWNDGRCAQECALLEARVPQSRVITGNLMMPGFTAPKLL-WVQRHEPEIFRQIDKVLLPKDYLRL 158 (484)
T ss_pred EEECC-CcCCccccccccCccHHHHHHHHHHhcchhHHHhCCCcCccchHHHHH-HHHHhCHHHHHHhhhhcChHHHHHh
Confidence 99999 9999999999999995 777777643 345788888999999999 99999999 999999999999999
Q ss_pred HHhcccceeehhhhhhcC-ccCCCCCCChHhhCC--CcCCCCCCCcCCCccccccCHHHHHHhCCCCCceEEEcCcchHH
Q 037497 222 LLHGKLGLSDYNNALKVG-YDPELESYPPWLLSQ--PYSQLLPSVQAPGTSIGYLKEGIRTEFGMFLFHLTCHWWKPTEH 298 (333)
Q Consensus 222 ~LTG~~~~~d~S~As~tg-~d~~~~~W~~~ll~~--~~~~~LP~vv~~g~~iG~l~~~~A~~~GL~~g~pV~~G~~D~~a 298 (333)
+|||+.. +|+++|++++ ||+++++|++++++. ++.++||+|+++++++|+|++++|+++||+ ++||++|++|++|
T Consensus 159 ~LTG~~~-~d~s~as~t~l~d~~~~~w~~~ll~~~gi~~~~lP~v~~~~~~~G~l~~~~a~~~GL~-~~pV~~g~~D~~a 236 (484)
T PRK15027 159 RMTGEFA-SDMSDAAGTMWLDVAKRDWSDVMLQACHLSRDQMPALYEGSEITGALLPEVAKAWGMA-TVPVVAGGGDNAA 236 (484)
T ss_pred hhcCCcc-ccHHHhhcccccccccCCCcHHHHHHhCCCHHHCCCCCCCccccccccHHHHHHhCCC-CCeEEecccHHHH
Confidence 9999998 9999999999 999999999999986 457899999999999999999999999998 6999999999999
Q ss_pred hhhhhccee
Q 037497 299 QTIVFLCIC 307 (333)
Q Consensus 299 a~~g~g~~~ 307 (333)
+++|+|++.
T Consensus 237 a~~g~g~~~ 245 (484)
T PRK15027 237 GAVGVGMVD 245 (484)
T ss_pred HHhccCccc
Confidence 999999875
No 7
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=100.00 E-value=5.7e-46 Score=376.85 Aligned_cols=232 Identities=18% Similarity=0.258 Sum_probs=208.7
Q ss_pred ceEEEEEeCccCceEEEEeCCCcEEEEEEEeecCc----CCccccccHHHHHHHHHHHHHhchhc---CCCCccEEEEec
Q 037497 71 RLYLGMDFGTSGARFAIINKDGTILSEGKKEYPKF----TTEESIDWLRSWKVTLFSLLEAVPVN---LRPLIASISIDG 143 (333)
Q Consensus 71 ~~~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~----~pg~~e~d~~~~~~~i~~~l~~l~~~---~~~~I~aIgis~ 143 (333)
+|+||||+|||++|++|||.+|++++..+.+++.. .||+.|||+++||+++.++++++..+ ...+|.+||+++
T Consensus 3 ~~~lgID~GTts~Ka~l~d~~G~~l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~~~~~~~~~~~~I~aI~~s~ 82 (520)
T PRK10939 3 SYLMALDAGTGSIRAVIFDLNGNQIAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQALQKAGIPASDIAAVSATS 82 (520)
T ss_pred cEEEEEecCCCceEEEEECCCCCEEEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHHHHHHcCCCccceEEEEEEC
Confidence 69999999999999999999999999998887643 25889999999999999999988753 345799999999
Q ss_pred CCceEEEEeCCCCccccCCcccCCChH-HHHHHHHH--------hccCCCCCCCChhHHHHHHHHHHHcCcc--ccccee
Q 037497 144 TSATTIIIDSNSGEPLWRPFLYNESCP-DALPVVKS--------IAPANHTVCSGTSTLCKLVSWWNTEGEN--RESALL 212 (333)
Q Consensus 144 ~~~s~v~vD~~~G~pl~p~i~W~D~R~-~~~~~l~~--------~~~~~g~~~~~~~~l~kll~Wl~~~~Pe--~k~~~~ 212 (333)
|++++++||+ +|+|+.+ +.|.|.|+ ++++++++ +++.+|.++ +.++++||+ |+++|+|+ +++.+|
T Consensus 83 ~~~~~v~~D~-~g~pl~~-~~~~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~~-~~~~~~kl~-Wl~~~~pe~~~~~~~~ 158 (520)
T PRK10939 83 MREGIVLYDR-NGTEIWA-CANVDARASREVSELKELHNNFEEEVYRCSGQTL-ALGALPRLL-WLAHHRPDIYRQAHTI 158 (520)
T ss_pred CcccEEEECC-CCCEeeC-CcCCCcccHHHHHHHHHhcChHHHHHHHHhCCcC-CcchHHHHH-HHHHcCcHHHHHhheE
Confidence 9999999999 9999965 67899994 67777643 344677764 678999999 99999999 999999
Q ss_pred eehHHHHHHHHhcccceeehhhhhhcC-ccCCCCCCChHhhCC--CcCCCCCCCcCCCccccccCHHHHHHhCCCCCceE
Q 037497 213 LHQADWLLWLLHGKLGLSDYNNALKVG-YDPELESYPPWLLSQ--PYSQLLPSVQAPGTSIGYLKEGIRTEFGMFLFHLT 289 (333)
Q Consensus 213 l~~~dyl~~~LTG~~~~~d~S~As~tg-~d~~~~~W~~~ll~~--~~~~~LP~vv~~g~~iG~l~~~~A~~~GL~~g~pV 289 (333)
++++|||.|+|||+.. +|+|+|++|| ||+++++|++++++. +++++||+|+++++++|.|++++|+.+||++|+||
T Consensus 159 ~~~~dyl~~~LTG~~~-~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~lP~i~~~g~~~G~v~~~~A~~~GL~~g~pV 237 (520)
T PRK10939 159 TMISDWIAYMLSGELA-VDPSNAGTTGLLDLVTRDWDPALLEMAGLRADILPPVKETGTVLGHVTAKAAAETGLRAGTPV 237 (520)
T ss_pred echhHhhhheeeCcee-eEhhhhhceeeeecCCCCCCHHHHHHcCCCHHHCCCCccCCceeeeecHHHHHhhCCCCCCcE
Confidence 9999999999999988 9999999999 999999999999986 56789999999999999999999999999999999
Q ss_pred EEcCcchHHhhhhhccee
Q 037497 290 CHWWKPTEHQTIVFLCIC 307 (333)
Q Consensus 290 ~~G~~D~~aa~~g~g~~~ 307 (333)
++|++|++++++|+|++.
T Consensus 238 ~~g~~D~~aa~~g~g~~~ 255 (520)
T PRK10939 238 VMGGGDVQLGCLGLGVVR 255 (520)
T ss_pred EEeCchHHHHHhhcCccc
Confidence 999999999999999875
No 8
>PRK00047 glpK glycerol kinase; Provisional
Probab=100.00 E-value=9.4e-46 Score=373.44 Aligned_cols=243 Identities=19% Similarity=0.214 Sum_probs=210.6
Q ss_pred CCceEEEEEeCccCceEEEEeCCCcEEEEEEEeecCcC--CccccccHHHHHHHHHHHHHhchhc---CCCCccEEEEec
Q 037497 69 GERLYLGMDFGTSGARFAIINKDGTILSEGKKEYPKFT--TEESIDWLRSWKVTLFSLLEAVPVN---LRPLIASISIDG 143 (333)
Q Consensus 69 ~~~~~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~--pg~~e~d~~~~~~~i~~~l~~l~~~---~~~~I~aIgis~ 143 (333)
|++|+||||+|||++|++|||.+|++++..+++|+..+ +|+.|||+++||+.+.++++++..+ ...+|.+||+++
T Consensus 3 m~~~~lgiD~GTts~Ka~l~d~~g~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~I~~Igis~ 82 (498)
T PRK00047 3 MKKYILALDQGTTSSRAIIFDHDGNIVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEALAKAGISPDQIAAIGITN 82 (498)
T ss_pred ccCEEEEEecCCCceEEEEECCCCCEEEEEeeeccccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcCCChhHeeEEEEec
Confidence 45799999999999999999999999999998888655 4778999999999999999998754 245799999999
Q ss_pred CCceEEEEeCCCCccccCCcccCCChH-HHHHHHHH------hccCCCCCCCChhHHHHHHHHHHHcCcc--cccc----
Q 037497 144 TSATTIIIDSNSGEPLWRPFLYNESCP-DALPVVKS------IAPANHTVCSGTSTLCKLVSWWNTEGEN--RESA---- 210 (333)
Q Consensus 144 ~~~s~v~vD~~~G~pl~p~i~W~D~R~-~~~~~l~~------~~~~~g~~~~~~~~l~kll~Wl~~~~Pe--~k~~---- 210 (333)
|++++++||+++|+|++|+++|+|.|+ ++++++.+ ++..+|.++++.++++||+ ||++|+|+ +++.
T Consensus 83 ~~~~~v~~D~~~G~pl~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~-Wl~~~~p~~~~~~~~~~~ 161 (498)
T PRK00047 83 QRETTVVWDKETGRPIYNAIVWQDRRTADICEELKRDGYEDYIREKTGLVIDPYFSGTKIK-WILDNVEGARERAEKGEL 161 (498)
T ss_pred CcceEEEEECCCCcCCcccceecccchHHHHHHHHhccchhhHHHhhCCCCCccchHHHHH-HHHHcCHhHHHHHhcCCe
Confidence 999999999736999999999999995 67777642 5567888889999999999 99999998 4443
Q ss_pred eeeehHHHHHHHHhcc--cceeehhhhhhcC-ccCCCCCCChHhhCC--CcCCCCCCCcCCCccccccCHHHHHHhCCCC
Q 037497 211 LLLHQADWLLWLLHGK--LGLSDYNNALKVG-YDPELESYPPWLLSQ--PYSQLLPSVQAPGTSIGYLKEGIRTEFGMFL 285 (333)
Q Consensus 211 ~~l~~~dyl~~~LTG~--~~~~d~S~As~tg-~d~~~~~W~~~ll~~--~~~~~LP~vv~~g~~iG~l~~~~A~~~GL~~ 285 (333)
++++++|||.|+|||. .+ +|+|+|++++ ||+++++|++++++. +++++||+|+++++++|.|+++ +|+++
T Consensus 162 ~~~~~~dyl~~~LTG~~~~~-~d~s~As~t~l~d~~~~~W~~ell~~~gi~~~~lP~i~~~g~~~G~v~~~----~~l~~ 236 (498)
T PRK00047 162 LFGTIDTWLVWKLTGGKVHV-TDYTNASRTMLFNIHTLDWDDELLELLDIPRSMLPEVRPSSEVYGKTNPY----GFFGG 236 (498)
T ss_pred EEeChHHhHhhhhcCCCeeE-eechHHhhhhccccccCccCHHHHHhcCCCHHHCCCccCCcccccccccc----ccCCC
Confidence 4778999999999965 56 9999999999 999999999999986 5568999999999999999987 67779
Q ss_pred CceEEEcCcchHHhhhhhcceeee----ecCeEEEE
Q 037497 286 FHLTCHWWKPTEHQTIVFLCICIV----INNKFSQI 317 (333)
Q Consensus 286 g~pV~~G~~D~~aa~~g~g~~~~~----i~g~~~~i 317 (333)
|+||++|++|++|+++|+|++..+ ..|+...+
T Consensus 237 g~pV~~g~~D~~aa~~G~G~~~~g~~~~~~GTs~~~ 272 (498)
T PRK00047 237 EVPIAGIAGDQQAALFGQLCFEPGMAKNTYGTGCFM 272 (498)
T ss_pred CceEEEEccHHHHHHHhCcCCCCCceEEeeccceEE
Confidence 999999999999999999876422 24565553
No 9
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=100.00 E-value=2e-45 Score=371.58 Aligned_cols=232 Identities=16% Similarity=0.219 Sum_probs=205.5
Q ss_pred ceEEEEEeCccCceEEEEeCCCcEEEEEEEeecCcC--CccccccHHHHHHHHHHHHHhchhc---CCC--CccEEEEec
Q 037497 71 RLYLGMDFGTSGARFAIINKDGTILSEGKKEYPKFT--TEESIDWLRSWKVTLFSLLEAVPVN---LRP--LIASISIDG 143 (333)
Q Consensus 71 ~~~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~--pg~~e~d~~~~~~~i~~~l~~l~~~---~~~--~I~aIgis~ 143 (333)
+|+||||+|||++|++|||.+|++++..+.+++... ||+.|||+++||++++++++++..+ ... +|.+||+++
T Consensus 2 ~~~lgiDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~~~I~aIgis~ 81 (504)
T PTZ00294 2 KYIGSIDQGTTSTRFIIFDEKGNVVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMNEAIKKLREKGPSFKIKAIGITN 81 (504)
T ss_pred cEEEEEecCCCceEEEEECCCCCEEEEEEEeecccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcCCCCccCceEEEEeec
Confidence 499999999999999999999999999999998654 4889999999999998888887653 233 799999999
Q ss_pred CCceEEEEeCCCCccccCCcccCCChH-HHHHHHHH-------hccCCCCCCCChhHHHHHHHHHHHcCcc--cc----c
Q 037497 144 TSATTIIIDSNSGEPLWRPFLYNESCP-DALPVVKS-------IAPANHTVCSGTSTLCKLVSWWNTEGEN--RE----S 209 (333)
Q Consensus 144 ~~~s~v~vD~~~G~pl~p~i~W~D~R~-~~~~~l~~-------~~~~~g~~~~~~~~l~kll~Wl~~~~Pe--~k----~ 209 (333)
|++++++||+++|+|++|+++|+|.|+ ++++++.+ ++..+|.++++.++++||+ ||++|+|+ ++ +
T Consensus 82 q~~~~v~~D~~~g~pl~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~tG~~~~~~~~~~kl~-wl~~~~P~~~~~~~~~~ 160 (504)
T PTZ00294 82 QRETVVAWDKVTGKPLYNAIVWLDTRTYDIVNELTKKYGGSNFFQKITGLPISTYFSAFKIR-WMLENVPAVKDAVKEGT 160 (504)
T ss_pred CcceEEEEECCCCCCcccceeecchhhHHHHHHHHhhcCcchHHHHhhCCcCCccchHHHHH-HHHhcCHHHHHhhhcCC
Confidence 999999998756999999999999994 67776643 2356788888999999999 99999999 64 4
Q ss_pred ceeeehHHHHHHHHhc--ccceeehhhhhhcC-ccCCCCCCChHhhCC--CcCCCCCCCcCCCccccccCHHHHHHhCCC
Q 037497 210 ALLLHQADWLLWLLHG--KLGLSDYNNALKVG-YDPELESYPPWLLSQ--PYSQLLPSVQAPGTSIGYLKEGIRTEFGMF 284 (333)
Q Consensus 210 ~~~l~~~dyl~~~LTG--~~~~~d~S~As~tg-~d~~~~~W~~~ll~~--~~~~~LP~vv~~g~~iG~l~~~~A~~~GL~ 284 (333)
.++++++|||.|+||| +.+ +|+|+|++|| ||+++++|++++++. +++++||+|+++++++|+|++ +.+|++
T Consensus 161 ~~~~~~~dyl~~~LTG~~~~~-~d~s~As~tgl~D~~~~~W~~~ll~~~gi~~~~LP~v~~~~~~~G~l~~---~~~~~~ 236 (504)
T PTZ00294 161 LLFGTIDTWLIWNLTGGKSHV-TDVTNASRTFLMNIKTLKWDEELLNKFGIPKETLPEIKSSSENFGTISG---EAVPLL 236 (504)
T ss_pred eEEEcHHHHHHHHhcCCceEE-EEhhhhHHhhccCcccCccCHHHHHHhCCCHHHCCCccCCccccCccch---hhcCCC
Confidence 4589999999999999 887 9999999999 999999999999986 556899999999999999994 467788
Q ss_pred CCceEEEcCcchHHhhhhhccee
Q 037497 285 LFHLTCHWWKPTEHQTIVFLCIC 307 (333)
Q Consensus 285 ~g~pV~~G~~D~~aa~~g~g~~~ 307 (333)
+|+||++|.+|++|+++|+|++.
T Consensus 237 ~g~pV~~g~~D~~aa~~G~g~~~ 259 (504)
T PTZ00294 237 EGVPITGCIGDQQAALIGHGCFE 259 (504)
T ss_pred CCCcEEEEecHHHHHHHhCcCCC
Confidence 99999999999999999999864
No 10
>PLN02669 xylulokinase
Probab=100.00 E-value=8.2e-45 Score=370.41 Aligned_cols=263 Identities=12% Similarity=0.107 Sum_probs=224.1
Q ss_pred CceEEEEEeCccCceEEEEeCCCcEEEEEEEeecCcC-----CccccccHH----------HHHHHHHHHHHhchhc--C
Q 037497 70 ERLYLGMDFGTSGARFAIINKDGTILSEGKKEYPKFT-----TEESIDWLR----------SWKVTLFSLLEAVPVN--L 132 (333)
Q Consensus 70 ~~~~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~-----pg~~e~d~~----------~~~~~i~~~l~~l~~~--~ 132 (333)
++|+||||+|||++|++|||.+|+++++++.+|+..+ ++++|+|++ .||+++..+++++.+. .
T Consensus 7 ~~~~LGiD~GT~s~Ka~l~d~~g~vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~l~~l~~~~~~ 86 (556)
T PLN02669 7 DSLFLGFDSSTQSLKATVLDSNLRIVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDLLLQKLAKEKFP 86 (556)
T ss_pred CCeEEEEecccCCeEEEEEcCCCCEEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 4699999999999999999999999999999987432 356788888 6889999999988642 3
Q ss_pred CCCccEEEEecCCceEEEEeCCCCccc-------------------cCCcccCCChH-HHHHHHHH-------hccCCCC
Q 037497 133 RPLIASISIDGTSATTIIIDSNSGEPL-------------------WRPFLYNESCP-DALPVVKS-------IAPANHT 185 (333)
Q Consensus 133 ~~~I~aIgis~~~~s~v~vD~~~G~pl-------------------~p~i~W~D~R~-~~~~~l~~-------~~~~~g~ 185 (333)
.++|.+||+++|+|++|+||+++|+|+ ++.++|+|.|+ ++++++++ ++..+|.
T Consensus 87 ~~~I~aIs~s~Q~~g~v~~d~~~~~~L~~ld~~g~l~~~L~~a~~~~~~i~W~D~Ra~~e~~~l~~~~gg~~~l~~~tG~ 166 (556)
T PLN02669 87 FHKVVAISGSGQQHGSVYWRKGASAVLKSLDPSKSLVAQLQDAFSTKDSPIWMDSSTTKQCREIEEAVGGAAELSKLTGS 166 (556)
T ss_pred hhhEEEEEecCCcceEEEecCCCCccccccccccchhhhhhhhhcCCCCcccCCccHHHHHHHHHHHcCcHHHHHHHHCC
Confidence 467999999999999999988567776 68889999994 77877754 3346888
Q ss_pred CCCChhHHHHHHHHHHHcCcc--cccceeeehHHHHHHHHhcccceeehhhhhhcC-ccCCCCCCChHhhCCC--c-CCC
Q 037497 186 VCSGTSTLCKLVSWWNTEGEN--RESALLLHQADWLLWLLHGKLGLSDYNNALKVG-YDPELESYPPWLLSQP--Y-SQL 259 (333)
Q Consensus 186 ~~~~~~~l~kll~Wl~~~~Pe--~k~~~~l~~~dyl~~~LTG~~~~~d~S~As~tg-~d~~~~~W~~~ll~~~--~-~~~ 259 (333)
..++.++.+||+ |+++|+|| +++++|+.++|||+|+|||+...+|+|+|++++ ||+++++|++++|+.. . .++
T Consensus 167 ~~~~~~t~~ki~-wl~~~~Pe~y~~t~~i~~~~dyl~~~LtG~~~~~D~sdasg~~l~Di~~~~Ws~~ll~~~~~~l~~~ 245 (556)
T PLN02669 167 RAYERFTGPQIR-KIYETQPEVYHDTERISLVSSFMASLLVGDYASIDETDGAGMNLMDIEKRCWSKAALEATAPGLEEK 245 (556)
T ss_pred cccccccHHHHH-HHHHhChHHHHHHHhhccHHHHHHHhhcCCCccccchhhhhhhhhccccCCcCHHHHHhhCccHHHH
Confidence 888899999999 99999999 999999999999999999996339999999999 9999999999999863 2 478
Q ss_pred CCCCcCCCccccccCHHHHHHhCCCCCceEEEcCcchHHhhhhhcceeee----ecCeEE-EEEecCCcccCCCCCccC
Q 037497 260 LPSVQAPGTSIGYLKEGIRTEFGMFLFHLTCHWWKPTEHQTIVFLCICIV----INNKFS-QISCSSDCRTGNLGDIFC 333 (333)
Q Consensus 260 LP~vv~~g~~iG~l~~~~A~~~GL~~g~pV~~G~~D~~aa~~g~g~~~~~----i~g~~~-~is~~s~~~~~~~~~~~~ 333 (333)
||+++++++++|+|++++|+++||++|+||++|++|++|+++|+|++..+ .-|+.. .+..+....+++.|++||
T Consensus 246 Lp~~~~~~~~~G~v~~~~a~~~Gl~~g~pV~~g~gD~~a~~~G~g~~~~g~~~~slGTs~~~~~~~~~~~~~~~~~~~~ 324 (556)
T PLN02669 246 LGKLAPAHAVAGKIHPYFVQRFGFSSNCLVVQWSGDNPNSLAGLTLSTPGDLAISLGTSDTVFGITREPQPSLEGHVFP 324 (556)
T ss_pred CcCCCCCCcceeeeCHHHHHHhCCCCCCEEEEecchHHHHHhccCCCCCCeEEEEEcccceEEEecCCCCCCCCcceee
Confidence 99999999999999999999999999999999999999999999985422 233433 334555567777787765
No 11
>PLN02295 glycerol kinase
Probab=100.00 E-value=1e-44 Score=367.02 Aligned_cols=227 Identities=16% Similarity=0.207 Sum_probs=200.6
Q ss_pred eEEEEEeCccCceEEEEeCCCcEEEEEEEeecCcCC--ccccccHHHHHHHHHHHHHhchhc---CCCC----ccEEEEe
Q 037497 72 LYLGMDFGTSGARFAIINKDGTILSEGKKEYPKFTT--EESIDWLRSWKVTLFSLLEAVPVN---LRPL----IASISID 142 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~p--g~~e~d~~~~~~~i~~~l~~l~~~---~~~~----I~aIgis 142 (333)
|+||||+|||++|++|||.+|++++..+.+|+..+| |+.||||++||++++++++++..+ .+++ |.+||++
T Consensus 1 ~vlgID~GTts~Ka~l~d~~G~~~~~~~~~~~~~~~~~G~~Eqdp~~~w~~~~~~i~~~~~~~~~~~~~i~~~i~aIg~s 80 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDRDARPVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKALEKAAAKGHNVDSGLKAIGIT 80 (512)
T ss_pred CEEEEecCCCceEEEEECCCCCEEEEEeecccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcCCCccccccceEEEEEe
Confidence 589999999999999999999999999999987654 889999999999999998887653 2344 7999999
Q ss_pred cCCceEEEEeCCCCccccCCcccCCChH-HHHHHHHH--------hccCCCCCCCChhHHHHHHHHHHHcCcc--ccc--
Q 037497 143 GTSATTIIIDSNSGEPLWRPFLYNESCP-DALPVVKS--------IAPANHTVCSGTSTLCKLVSWWNTEGEN--RES-- 209 (333)
Q Consensus 143 ~~~~s~v~vD~~~G~pl~p~i~W~D~R~-~~~~~l~~--------~~~~~g~~~~~~~~l~kll~Wl~~~~Pe--~k~-- 209 (333)
+|++++++||.++|+|++|+|+|+|.|+ ++++++.+ ++..+|.++++.++++||+ ||++|+|+ +++
T Consensus 81 ~q~~~~v~~dd~~G~pl~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~~~~~~~~~kl~-Wl~~~~P~~~~~~~~ 159 (512)
T PLN02295 81 NQRETTVAWSKSTGRPLYNAIVWMDSRTSSICRRLEKELSGGRKHFVETCGLPISTYFSATKLL-WLLENVDAVKEAVKS 159 (512)
T ss_pred cCcceEEEEECCCCCCcccceeccccchHHHHHHHHhhccchhHHHHHhhCCcCCcccHHHHHH-HHHhcCHHHHHhhhc
Confidence 9999999995339999999999999995 67777643 2256788889999999999 99999999 444
Q ss_pred --ceeeehHHHHHHHHhc-----ccceeehhhhhhcC-ccCCCCCCChHhhCC--CcCCCCCCCcCCCccccccCHHHHH
Q 037497 210 --ALLLHQADWLLWLLHG-----KLGLSDYNNALKVG-YDPELESYPPWLLSQ--PYSQLLPSVQAPGTSIGYLKEGIRT 279 (333)
Q Consensus 210 --~~~l~~~dyl~~~LTG-----~~~~~d~S~As~tg-~d~~~~~W~~~ll~~--~~~~~LP~vv~~g~~iG~l~~~~A~ 279 (333)
.++++++|||.|+||| +.+ +|+|+|++++ ||+++++|++++++. +++++||+|+++++++|+|+++++.
T Consensus 160 ~~~~~~~~~dyl~~~LTG~~~~~~~~-td~s~As~t~l~D~~~~~W~~ell~~~gi~~~~lP~l~~~~~~~G~v~~~~a~ 238 (512)
T PLN02295 160 GDALFGTIDSWLIWNLTGGASGGVHV-TDVTNASRTMLMNLKTLDWDKPTLEALGIPAEILPKIVSNSEVIGTIAKGWPL 238 (512)
T ss_pred CceEEEcHHHHHHHHhhCCCCCCeEE-eeHHHhHHhhccCcccCcCCHHHHHHcCCCHHHCCCcccCccceecccccccc
Confidence 4899999999999999 566 9999999999 999999999999986 5568999999999999999998765
Q ss_pred HhCCCCCceEEEcCcchHHhhhhhcc
Q 037497 280 EFGMFLFHLTCHWWKPTEHQTIVFLC 305 (333)
Q Consensus 280 ~~GL~~g~pV~~G~~D~~aa~~g~g~ 305 (333)
+|+||++|++|++|+++|+|+
T Consensus 239 -----~g~pV~~g~~D~~aa~~G~G~ 259 (512)
T PLN02295 239 -----AGVPIAGCLGDQHAAMLGQRC 259 (512)
T ss_pred -----CCCcEEEEechHHHHHhhCcC
Confidence 489999999999999999987
No 12
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=100.00 E-value=2.8e-44 Score=365.75 Aligned_cols=233 Identities=16% Similarity=0.185 Sum_probs=206.3
Q ss_pred eEEEEEeCccCceEEEEe-CCCcEEEEEEEeecC-----cC--------CccccccHHHHHHHHHHHHHhchhc---CCC
Q 037497 72 LYLGMDFGTSGARFAIIN-KDGTILSEGKKEYPK-----FT--------TEESIDWLRSWKVTLFSLLEAVPVN---LRP 134 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D-~~G~il~~~~~~~~~-----~~--------pg~~e~d~~~~~~~i~~~l~~l~~~---~~~ 134 (333)
|+||||+|||++|++||| .+|++++..+.+++. .+ ||+.||||++||++++++++++..+ ...
T Consensus 2 ~~lgiD~GTss~Ka~l~d~~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~~~~~~~~~~~~~~ 81 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDVATGEEIATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAAIPTVLAELGVDPA 81 (536)
T ss_pred eEEEEecCCCceEEEEEECCCCcEeeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 799999999999999999 899999999988873 12 4789999999999999999988764 235
Q ss_pred CccEEEEecCCceEEEEeCCCCccccC-----------CcccCCCh-HHHHHHHHHh--------ccCCCCCCCChhHHH
Q 037497 135 LIASISIDGTSATTIIIDSNSGEPLWR-----------PFLYNESC-PDALPVVKSI--------APANHTVCSGTSTLC 194 (333)
Q Consensus 135 ~I~aIgis~~~~s~v~vD~~~G~pl~p-----------~i~W~D~R-~~~~~~l~~~--------~~~~g~~~~~~~~l~ 194 (333)
+|++||+++|+++++++|+ +|+|+++ +|+|+|.| .+++++|++. +..+|.++++.++++
T Consensus 82 ~I~aI~~s~q~~s~v~~D~-~g~pl~~~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~~~~~~~~~ 160 (536)
T TIGR01234 82 DVVGIGVDFTACTPAPIDS-DGNPLCLLPEFAENPHAYFKLWKHHAAQEEADRINRLAHAPGEVDLSRYGGIISSEWFWA 160 (536)
T ss_pred HEEEEEEecCcceeEEECC-CCCEeecccccccCcccceeeeccCCcHHHHHHHHHHhhccchhHHHhhCCccCchhHHH
Confidence 6999999999999999999 9999983 89999999 4777777542 445788888999999
Q ss_pred HHHHHHHHcCcc--cccceeeehHHHHHHHHhcccceeehhhhhhcC-ccCCCCCCChHhhCC--C------cCCCCCCC
Q 037497 195 KLVSWWNTEGEN--RESALLLHQADWLLWLLHGKLGLSDYNNALKVG-YDPELESYPPWLLSQ--P------YSQLLPSV 263 (333)
Q Consensus 195 kll~Wl~~~~Pe--~k~~~~l~~~dyl~~~LTG~~~~~d~S~As~tg-~d~~~~~W~~~ll~~--~------~~~~LP~v 263 (333)
||+ |+++|+|+ ++++++++++|||.|+|||+.+ +|+++++.++ ++.+-+.|++++++. + ++++||+|
T Consensus 161 kl~-Wl~~~~pe~~~~~~~~l~~~dyl~~~LTG~~~-~d~s~a~~~~l~~~~w~~~~~~~l~~~g~~~~~~lp~~~~p~i 238 (536)
T TIGR01234 161 KIL-QITEEDPAIYQAADRWIELADWIVAQLSGDIR-RGRCTAGYKALWHESWGYPSASFFDELNPILNRHLPDKLFTDI 238 (536)
T ss_pred HHH-HHHhhChHHHHHHhhhcCHHHHHHHHHhCCcc-ccchhcccceeccccccCCCHHHHHHhcchhhhhhhhhcCCce
Confidence 999 99999999 9999999999999999999998 8999998888 776555559998865 1 46889999
Q ss_pred cCCCccccccCHHHHHHhCCCCCceEEEcCcchHHhhhhhccee
Q 037497 264 QAPGTSIGYLKEGIRTEFGMFLFHLTCHWWKPTEHQTIVFLCIC 307 (333)
Q Consensus 264 v~~g~~iG~l~~~~A~~~GL~~g~pV~~G~~D~~aa~~g~g~~~ 307 (333)
+++++++|+|++++|+++||++|+||++|++|++|+++|+|++.
T Consensus 239 ~~~g~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~~g~g~~~ 282 (536)
T TIGR01234 239 WTAGEPAGTLTPEWAQRTGLPEGVVVAVGNFDAHVGAVAAGIAQ 282 (536)
T ss_pred ecCCCcccccCHHHHHHhCCCCCCeEEecchhHhhhhhcccccc
Confidence 99999999999999999999999999999999999999999865
No 13
>PRK04123 ribulokinase; Provisional
Probab=100.00 E-value=5.1e-44 Score=364.66 Aligned_cols=233 Identities=16% Similarity=0.183 Sum_probs=205.4
Q ss_pred CceEEEEEeCccCceEEEEeC-CCcEEEEEEEeecCc--------CCccccccHHHHHHHHHHHHHhchhc---CCCCcc
Q 037497 70 ERLYLGMDFGTSGARFAIINK-DGTILSEGKKEYPKF--------TTEESIDWLRSWKVTLFSLLEAVPVN---LRPLIA 137 (333)
Q Consensus 70 ~~~~lGIDiGTTsiKa~l~D~-~G~il~~~~~~~~~~--------~pg~~e~d~~~~~~~i~~~l~~l~~~---~~~~I~ 137 (333)
++|+||||+|||++|++|||. +|+++++.+.+|+.. .||+.||||++||+++.++++++..+ ...+|.
T Consensus 2 ~~~~lgiD~GTts~Ka~l~d~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~~~~~~~~~~~I~ 81 (548)
T PRK04123 2 MAYVIGLDFGTDSVRALLVDCATGEELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAVLKEAGVDPAAVV 81 (548)
T ss_pred CcEEEEEecCCCceEEEEEECCCCcEeEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHHHHHcCCChhhEE
Confidence 469999999999999999995 999999999888742 24789999999999999988887643 245799
Q ss_pred EEEEecCCceEEEEeCCCCcccc-----------CCcccCCChH-HHHHHHHHh--------cc-CCCCCCCChhHHHHH
Q 037497 138 SISIDGTSATTIIIDSNSGEPLW-----------RPFLYNESCP-DALPVVKSI--------AP-ANHTVCSGTSTLCKL 196 (333)
Q Consensus 138 aIgis~~~~s~v~vD~~~G~pl~-----------p~i~W~D~R~-~~~~~l~~~--------~~-~~g~~~~~~~~l~kl 196 (333)
+||+++|++++++||+ +|+|++ |+|+|+|.|+ +++++|.+. +. .+|..+++.++++||
T Consensus 82 aIgis~~~~~~v~~D~-~G~pl~~~~~~~~~p~~~~i~W~D~Ra~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~kl 160 (548)
T PRK04123 82 GIGVDFTGSTPAPVDA-DGTPLALLPEFAENPHAMVKLWKDHTAQEEAEEINRLAHERGEADLSRYIGGIYSSEWFWAKI 160 (548)
T ss_pred EEEEecccceeEEECC-CCCEeecccccccCcccceeEeccCCHHHHHHHHHHHhccchhhHHHHhcCCccCcchHHHHH
Confidence 9999999999999999 999997 8999999995 677777543 22 236666888999999
Q ss_pred HHHHHHcCcc--cccceeeehHHHHHHHHhc-----ccceeehhhhhhcC-ccCC-CCCCChHhhCC--------CcCCC
Q 037497 197 VSWWNTEGEN--RESALLLHQADWLLWLLHG-----KLGLSDYNNALKVG-YDPE-LESYPPWLLSQ--------PYSQL 259 (333)
Q Consensus 197 l~Wl~~~~Pe--~k~~~~l~~~dyl~~~LTG-----~~~~~d~S~As~tg-~d~~-~~~W~~~ll~~--------~~~~~ 259 (333)
+ ||++|+|+ ++++++++++|||.|+||| +.. +|++.++.++ ||.+ .+.|++++++. +..++
T Consensus 161 ~-Wl~~~~P~~~~~~~~~l~~~dyl~~~LTG~~~~~~~~-~~~~~as~~~~~d~~~~~~~s~ell~~~g~~l~~~i~~~l 238 (548)
T PRK04123 161 L-HVLREDPAVYEAAASWVEACDWVVALLTGTTDPQDIV-RSRCAAGHKALWHESWGGLPSADFFDALDPLLARGLRDKL 238 (548)
T ss_pred H-HHHhhCHHHHHHHhHhccHHHHHHHHHhCCCCccccc-cchhhcccccccccccCCCCCHHHHHHhccchhhhhHhhc
Confidence 9 99999999 8999999999999999999 666 8999999999 9998 56669999974 23578
Q ss_pred CCCCcCCCccccccCHHHHHHhCCCCCceEEEcCcchHHhhhhhcc
Q 037497 260 LPSVQAPGTSIGYLKEGIRTEFGMFLFHLTCHWWKPTEHQTIVFLC 305 (333)
Q Consensus 260 LP~vv~~g~~iG~l~~~~A~~~GL~~g~pV~~G~~D~~aa~~g~g~ 305 (333)
||+|+++++++|+|++++|+++||++|+||++|++|++|+++|+|+
T Consensus 239 lP~l~~~g~~~G~v~~~~a~~~GL~~g~pV~~g~~D~~aa~~G~g~ 284 (548)
T PRK04123 239 FTETWTAGEPAGTLTAEWAQRLGLPEGVAVSVGAFDAHMGAVGAGA 284 (548)
T ss_pred CCccccCCCcccccCHHHHHHhCCCCCCeEEecchhhhhhhcccCc
Confidence 9999999999999999999999999999999999999999999997
No 14
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=100.00 E-value=2.1e-44 Score=366.94 Aligned_cols=230 Identities=17% Similarity=0.178 Sum_probs=206.0
Q ss_pred eEEEEEeCccCceEEEEeCCCcEEEEEEEeecCcC--CccccccHHHHHHHHHHHHHhchhc---CCCCccEEEEecCCc
Q 037497 72 LYLGMDFGTSGARFAIINKDGTILSEGKKEYPKFT--TEESIDWLRSWKVTLFSLLEAVPVN---LRPLIASISIDGTSA 146 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~--pg~~e~d~~~~~~~i~~~l~~l~~~---~~~~I~aIgis~~~~ 146 (333)
++||||+|||++|++|||.+|+++++.+.+++..+ ||+.|||+++||+.+.++++++..+ ...+|.+|||++| +
T Consensus 1 ~~lgID~GTts~Ka~l~d~~G~i~~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~~~~~~~~~~I~~Igis~~-~ 79 (541)
T TIGR01315 1 HYIGVDVGTGSARACIIDSTGDILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQVLAESKVDPNSVKGIGFDAT-C 79 (541)
T ss_pred CEEEEEecCcCEEEEEEcCCCCEEEEEEeeeeeccCCCCcccCCHHHHHHHHHHHHHHHHHHcCCChhheEEEEeccc-c
Confidence 37999999999999999999999999988887655 4789999999999999999988764 2457999999999 8
Q ss_pred eEEEEeCCCCccc---------cCCcccCCChH-HHHHHHHH----hccCCCCCCCChhHHHHHHHHHHHcCcc--cccc
Q 037497 147 TTIIIDSNSGEPL---------WRPFLYNESCP-DALPVVKS----IAPANHTVCSGTSTLCKLVSWWNTEGEN--RESA 210 (333)
Q Consensus 147 s~v~vD~~~G~pl---------~p~i~W~D~R~-~~~~~l~~----~~~~~g~~~~~~~~l~kll~Wl~~~~Pe--~k~~ 210 (333)
+++++|+ +|+|+ +|+|+|+|.|+ ++++++++ +++.+|.++++.++++||+ |+++|+|+ +++.
T Consensus 80 s~v~~D~-~g~pl~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~-Wl~~~~Pe~~~~~~ 157 (541)
T TIGR01315 80 SLVVLTH-DGEPLPVSKNGGADQNIILWMDHRALAEAEKINATNHNLLRYVGGKMSVEMEIPKVL-WLKNNMPPELFARC 157 (541)
T ss_pred cceEEcC-CCCeeecCCCCCcccceeEeecCcHHHHHHHHHHHHHHHHHHhCCeeCcchhHHHHH-HHHHhChHHHHHhh
Confidence 9999999 99999 89999999995 77777753 4567888889999999999 99999999 9999
Q ss_pred eeeehHHHHHHHHhcccceeehhhhhhcC-cc---CCCCCCChHhhCC--CcC---CCC----CCCcCCCccccc-cCHH
Q 037497 211 LLLHQADWLLWLLHGKLGLSDYNNALKVG-YD---PELESYPPWLLSQ--PYS---QLL----PSVQAPGTSIGY-LKEG 276 (333)
Q Consensus 211 ~~l~~~dyl~~~LTG~~~~~d~S~As~tg-~d---~~~~~W~~~ll~~--~~~---~~L----P~vv~~g~~iG~-l~~~ 276 (333)
++++++|||.|+|||+.+ +|+++++.++ || +++++|++++++. ++. ++| |+++++++++|+ |+++
T Consensus 158 ~~l~~~dyl~~~LTG~~~-~d~~~as~~~~~d~~d~~~~~W~~ell~~~Gi~~~~~~~l~~~lp~i~~~~~~~G~~v~~~ 236 (541)
T TIGR01315 158 KFFDLTDFLTWRATGKEI-RSFCSVVCKWGFVPVDGSNKGWQEDFYETIGLGELVTDNFIRMGGSWMSPGELVGGGLTAE 236 (541)
T ss_pred hhcchhhhheeeeecchh-HhHhHHhHhhhccccccccCCCCHHHHHHcCChhhhhccccccCCcccCCCcccccccCHH
Confidence 999999999999999988 8999998877 88 6999999999986 322 224 999999999999 9999
Q ss_pred HHHHhCCCCCceEEEcCcchHHhhhhhcc
Q 037497 277 IRTEFGMFLFHLTCHWWKPTEHQTIVFLC 305 (333)
Q Consensus 277 ~A~~~GL~~g~pV~~G~~D~~aa~~g~g~ 305 (333)
+|+++||++|+||++|++|++|+++|+|+
T Consensus 237 ~A~~~GL~~g~pV~~g~~D~~aa~lG~g~ 265 (541)
T TIGR01315 237 AAQELGLPAGTAVGSGLIDAHAGWIGTVG 265 (541)
T ss_pred HHHHhCCCCCCeEeechHhhhcccccccc
Confidence 99999999999999999999999999965
No 15
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=100.00 E-value=1e-43 Score=358.25 Aligned_cols=230 Identities=20% Similarity=0.248 Sum_probs=205.1
Q ss_pred ceEEEEEeCccCceEEEEeCCCcEEEEEEEeecCcC--CccccccHHHHHHHHHHHHHhchhc---CCCCccEEEEecCC
Q 037497 71 RLYLGMDFGTSGARFAIINKDGTILSEGKKEYPKFT--TEESIDWLRSWKVTLFSLLEAVPVN---LRPLIASISIDGTS 145 (333)
Q Consensus 71 ~~~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~--pg~~e~d~~~~~~~i~~~l~~l~~~---~~~~I~aIgis~~~ 145 (333)
+|+||||+|||++|++|||.+|++++..+.+++..+ +|+.|+|+++||+.+.++++++..+ .+.+|.+||+++|+
T Consensus 1 ~~~lgiDiGtt~iKa~l~d~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~~i~aIgis~~~ 80 (493)
T TIGR01311 1 PYILAIDQGTTSSRAIVFDKDGNIVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAEALAKAGIKPDDIAAIGITNQR 80 (493)
T ss_pred CeEEEEecCCCceEEEEECCCCCEEEEEeeeccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcCCChhheeEEEEecCc
Confidence 489999999999999999999999999999887654 4778999999999999999988654 24679999999999
Q ss_pred ceEEEEeCCCCccccCCcccCCChH-HHHHHHHH------hccCCCCCCCChhHHHHHHHHHHHcCcc--cccc----ee
Q 037497 146 ATTIIIDSNSGEPLWRPFLYNESCP-DALPVVKS------IAPANHTVCSGTSTLCKLVSWWNTEGEN--RESA----LL 212 (333)
Q Consensus 146 ~s~v~vD~~~G~pl~p~i~W~D~R~-~~~~~l~~------~~~~~g~~~~~~~~l~kll~Wl~~~~Pe--~k~~----~~ 212 (333)
+++++||+++|+|++|+++|+|.|+ +++++|.+ +++.+|.++++.++++||+ |+++|+|| ++++ ++
T Consensus 81 ~~~v~~D~~~G~~l~p~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~-wlk~~~Pe~~~~~~~~~~~~ 159 (493)
T TIGR01311 81 ETTVVWDKATGKPLYNAIVWQDRRTASICEELKAEGYGEFIREKTGLPLDPYFSATKLR-WLLDNVPGVREAAERGELLF 159 (493)
T ss_pred ceEEEEECCCCcCcccceeecccchHHHHHHHHHhcchHHHHHHhCCcCCccchHHHHH-HHHhcCHHHHHHhhcCCeEE
Confidence 9999999735999999999999995 66776643 4456888888999999999 99999999 6554 47
Q ss_pred eehHHHHHHHHhc--ccceeehhhhhhcC-ccCCCCCCChHhhCC--CcCCCCCCCcCCCccccccCHHHHHHhCCCCCc
Q 037497 213 LHQADWLLWLLHG--KLGLSDYNNALKVG-YDPELESYPPWLLSQ--PYSQLLPSVQAPGTSIGYLKEGIRTEFGMFLFH 287 (333)
Q Consensus 213 l~~~dyl~~~LTG--~~~~~d~S~As~tg-~d~~~~~W~~~ll~~--~~~~~LP~vv~~g~~iG~l~~~~A~~~GL~~g~ 287 (333)
++++|||.|+||| +.+ +|+|+|++++ ||+++++|++++++. +++++||+|+++++++|+|+++ |+++|+
T Consensus 160 ~~~~dyl~~~LtG~~~~~-~d~s~As~t~l~d~~~~~W~~~~l~~~gi~~~~lP~l~~~g~~~G~v~~~-----~l~~g~ 233 (493)
T TIGR01311 160 GTIDTWLIWNLTGGKVHV-TDVTNASRTMLFNIHTLDWDDELLELFGIPREILPEVRSSSEVYGYTDPG-----LLGAEI 233 (493)
T ss_pred ECHhHhhhhhccCCceEE-eccchhhhhhcccccccccCHHHHHHcCCCHHHCCCccCCccceeccccc-----ccCCCc
Confidence 8899999999999 887 9999999999 999999999999986 4568999999999999999987 778999
Q ss_pred eEEEcCcchHHhhhhhccee
Q 037497 288 LTCHWWKPTEHQTIVFLCIC 307 (333)
Q Consensus 288 pV~~G~~D~~aa~~g~g~~~ 307 (333)
||++|.+|++|+++|+|++.
T Consensus 234 pV~~g~~D~~aa~~G~g~~~ 253 (493)
T TIGR01311 234 PITGVLGDQQAALFGQACFK 253 (493)
T ss_pred eEEEecccHHHHHhhCcCCC
Confidence 99999999999999999765
No 16
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=100.00 E-value=3.9e-43 Score=352.20 Aligned_cols=244 Identities=17% Similarity=0.231 Sum_probs=215.5
Q ss_pred EEEEeCccCceEEEEeCCCcEEEEEEEeecCcC--CccccccHHHHHHHHHHHHHhchhc---CCCCccEEEEecCCceE
Q 037497 74 LGMDFGTSGARFAIINKDGTILSEGKKEYPKFT--TEESIDWLRSWKVTLFSLLEAVPVN---LRPLIASISIDGTSATT 148 (333)
Q Consensus 74 lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~--pg~~e~d~~~~~~~i~~~l~~l~~~---~~~~I~aIgis~~~~s~ 148 (333)
||||+|||++|++|+|.+|+++++.+.+++..+ |++.++++++||+.+.++++++..+ ...+|.+||+++|++++
T Consensus 1 lgIDiGtt~ik~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~l~~~i~~~~~~~~~~~~~I~gIgvs~~~~g~ 80 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDEQGEVIASGSAPHTVISPHPGWSEQDPEDWWDATEEAIKELLEQASEMGQDIKGIGISGQMHGL 80 (481)
T ss_pred CceeecCcceEEEEECCCCCEEEEEeecccccCCCCCCeeeCHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEecCCcee
Confidence 689999999999999999999999999988654 4778999999999999999988764 23579999999999999
Q ss_pred EEEeCCCCccccCCcccCCChH-HHHHHHHH------hccCCCCCCCChhHHHHHHHHHHHcCcc--cccceeeehHHHH
Q 037497 149 IIIDSNSGEPLWRPFLYNESCP-DALPVVKS------IAPANHTVCSGTSTLCKLVSWWNTEGEN--RESALLLHQADWL 219 (333)
Q Consensus 149 v~vD~~~G~pl~p~i~W~D~R~-~~~~~l~~------~~~~~g~~~~~~~~l~kll~Wl~~~~Pe--~k~~~~l~~~dyl 219 (333)
++||+ +|+|+.|++.|+|.|. ++++++++ +++.++....+.++++||+ |+++|+|+ +++.+++++.|||
T Consensus 81 v~~d~-~g~~l~~~i~W~D~r~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~kl~-wl~~~~p~~~~~~~~~~~~~~yi 158 (481)
T TIGR01312 81 VLLDA-NGEVLRPAILWNDTRTAQECEELEAELGDERVLEITGNLALPGFTAPKLL-WVRKHEPEVFARIAKVMLPKDYL 158 (481)
T ss_pred EEECC-CcCCCccchhhhccchHHHHHHHHHhcCHhHHHHHHCCCCCccchHHHHH-HHHHcChHHHHHhheeeCchHHH
Confidence 99997 9999999999999994 56666654 2345677778899999999 99999999 8999999999999
Q ss_pred HHHHhcccceeehhhhhhcC-ccCCCCCCChHhhCC--CcCCCCCCCcCCCccccccCHHHHHHhCCCCCceEEEcCcch
Q 037497 220 LWLLHGKLGLSDYNNALKVG-YDPELESYPPWLLSQ--PYSQLLPSVQAPGTSIGYLKEGIRTEFGMFLFHLTCHWWKPT 296 (333)
Q Consensus 220 ~~~LTG~~~~~d~S~As~tg-~d~~~~~W~~~ll~~--~~~~~LP~vv~~g~~iG~l~~~~A~~~GL~~g~pV~~G~~D~ 296 (333)
.|+|||+.. +|+++|++|| ||+++++|++++++. +++++||+|+++++++|++++++|+++||++|+||++|++|+
T Consensus 159 ~~~LtG~~~-~d~t~as~tgl~d~~~~~W~~~~l~~~gi~~~~Lp~iv~~~~~~G~v~~~~a~~~Gl~~g~pV~~g~~D~ 237 (481)
T TIGR01312 159 RYRLTGEYV-TEYSDASGTGWFDVAKRAWSKELLDALDLPESQLPELIESSEKAGTVRPEVAARLGLSAGVPVAAGGGDN 237 (481)
T ss_pred hhhhcCCee-eeHHHhhcccccccCCCCCCHHHHHHhCCCHHHCCCccCCCCeeeeEcHHHHHHhCCCCCCeEEecchHH
Confidence 999999987 9999999999 999999999999986 567899999999999999999999999999999999999999
Q ss_pred HHhhhhhcceeee----ecCeEEEEEec
Q 037497 297 EHQTIVFLCICIV----INNKFSQISCS 320 (333)
Q Consensus 297 ~aa~~g~g~~~~~----i~g~~~~is~~ 320 (333)
+|+++|+|++..+ ..|+...+...
T Consensus 238 ~aa~~g~g~~~~g~~~~~~GTs~~~~~~ 265 (481)
T TIGR01312 238 AAGAIGTGTVDPGDAMMSLGTSGVVYAV 265 (481)
T ss_pred HHHhhCCCcccCCcEEEEecCceEEEEe
Confidence 9999999975422 35565555443
No 17
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=100.00 E-value=4.7e-43 Score=339.70 Aligned_cols=234 Identities=19% Similarity=0.248 Sum_probs=207.6
Q ss_pred CceEEEEEeCccCceEEEEeCCCcEEEEEEEeecCcCC--ccccccHHHHHHHHHHHHHhchhc---CCCCccEEEEecC
Q 037497 70 ERLYLGMDFGTSGARFAIINKDGTILSEGKKEYPKFTT--EESIDWLRSWKVTLFSLLEAVPVN---LRPLIASISIDGT 144 (333)
Q Consensus 70 ~~~~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~p--g~~e~d~~~~~~~i~~~l~~l~~~---~~~~I~aIgis~~ 144 (333)
++|+++||.||||+|+.+||.+|++++..+.+++.++| ||+||||+++|+.+..+++++..+ .+.+|.+|||+.|
T Consensus 4 ~~yIlAiDqGTTssRaivfd~~g~iva~~q~e~~Q~yP~~GWVEhDp~eIw~~~~~~l~~a~~~~~i~~~~iaaIGITNQ 83 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDEDGNIVAIAQREFTQIYPQPGWVEHDPLEIWASVRSVLKEALAKAGIKPGEIAAIGITNQ 83 (499)
T ss_pred ccEEEEEecCCcceeEEEECCCCCchhhhhhhhhhhCCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccceEEEEeecc
Confidence 37999999999999999999999999999999987775 999999999999998888887554 4678999999999
Q ss_pred CceEEEEeCCCCccccCCcccCCCh-HHHHHHHHHh------ccCCCCCCCChhHHHHHHHHHHHcCcc-----ccccee
Q 037497 145 SATTIIIDSNSGEPLWRPFLYNESC-PDALPVVKSI------APANHTVCSGTSTLCKLVSWWNTEGEN-----RESALL 212 (333)
Q Consensus 145 ~~s~v~vD~~~G~pl~p~i~W~D~R-~~~~~~l~~~------~~~~g~~~~~~~~l~kll~Wl~~~~Pe-----~k~~~~ 212 (333)
+++.|+||+++|+|++|+|.|||.| ++.+++|++. .+.+|.++.|+|+..|+. |+.+|.|. ++....
T Consensus 84 RETtvvWdk~tG~Pi~naIvWQdrRTa~~c~~L~~~g~~~~i~~kTGL~~dpYFSatKi~-WiLdnv~g~r~~ae~Gel~ 162 (499)
T COG0554 84 RETTVVWDKETGKPIYNAIVWQDRRTADICEELKADGYEERIREKTGLVLDPYFSATKIK-WILDNVPGARERAEKGELL 162 (499)
T ss_pred ceeEEEEeCCCCCCcccceeeeccchHHHHHHHHhcchhhhhhhhcCCccCCCccchhhh-HHHhhChhhhhHhhcCCeE
Confidence 9999999999999999999999999 5788888652 357899999999999999 99999995 666667
Q ss_pred eehHH-HHHHHHhc-ccceeehhhhhhcC-ccCCCCCCChHhhCC--CcCCCCCCCcCCCccccccCHHHHHHhCCCCCc
Q 037497 213 LHQAD-WLLWLLHG-KLGLSDYNNALKVG-YDPELESYPPWLLSQ--PYSQLLPSVQAPGTSIGYLKEGIRTEFGMFLFH 287 (333)
Q Consensus 213 l~~~d-yl~~~LTG-~~~~~d~S~As~tg-~d~~~~~W~~~ll~~--~~~~~LP~vv~~g~~iG~l~~~~A~~~GL~~g~ 287 (333)
++.-| ||.|+||| +.+++|+||||+|+ ||+++.+||+++|++ ++++.||+|.++.++.|.... -.+...+
T Consensus 163 fGTiDtWLiw~LTgg~~h~TD~sNASRT~L~ni~~l~WD~elL~il~Ip~~~LPev~~ss~~~G~t~~-----~~~g~~v 237 (499)
T COG0554 163 FGTIDTWLIWKLTGGKVHVTDYSNASRTMLFNIHSLEWDDELLELLGIPRSMLPEVRPSSEIYGVTGI-----GFLGAEV 237 (499)
T ss_pred EecchhhheeeccCCceeccccchhHHHhcccccccCCCHHHHHHhCCChHhCccccccccccccccc-----cccCCce
Confidence 77777 99999997 33349999999999 999999999999997 568899999999999998765 3356779
Q ss_pred eEEEcCcchHHhhhhhcceeee
Q 037497 288 LTCHWWKPTEHQTIVFLCICIV 309 (333)
Q Consensus 288 pV~~G~~D~~aa~~g~g~~~~~ 309 (333)
||..-.+|+++|.+|-||+..+
T Consensus 238 PI~g~~GDQQAALfGq~c~~pG 259 (499)
T COG0554 238 PITGVAGDQQAALFGQGCFEPG 259 (499)
T ss_pred eeccccchhHHHHhhcccCCcC
Confidence 9999999999999999887655
No 18
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=100.00 E-value=4.1e-42 Score=343.31 Aligned_cols=224 Identities=17% Similarity=0.129 Sum_probs=198.0
Q ss_pred EEEEeCccCceEEEEeCC---CcEE-EEEEEeecCcC--CccccccHHHHHHHHHHHHHhchhcCCCCccEEEEecCCce
Q 037497 74 LGMDFGTSGARFAIINKD---GTIL-SEGKKEYPKFT--TEESIDWLRSWKVTLFSLLEAVPVNLRPLIASISIDGTSAT 147 (333)
Q Consensus 74 lGIDiGTTsiKa~l~D~~---G~il-~~~~~~~~~~~--pg~~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~~~~s 147 (333)
||||+|||++|++|+|.+ |+++ +....+++... +++.++|++.||+++.++++++.. ...+|.+|||++|+++
T Consensus 1 ~aiD~Gtt~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~~~~i~~Igis~q~~~ 79 (454)
T TIGR02627 1 VAVDLGASSGRVMLASYENECQKLTLEEIHRFKNGLVSQNGHECWDIDALEQEIRLGLNKVDA-EGIAPDSIGIDTWGVD 79 (454)
T ss_pred CcEeccCCchheEEEEEcCCCceEEEEEEEeCCCCCEeECCEEEEehHHHHHHHHHHHHHHhc-cCCCceEEEEecccee
Confidence 589999999999999988 5666 56666655443 367899999999999999999876 3457999999999999
Q ss_pred EEEEeCCCCccccCCcccCCCh-HHHHHHHHH------hccCCCCCCCChhHHHHHHHHHHHcCcc--cccceeeehHHH
Q 037497 148 TIIIDSNSGEPLWRPFLYNESC-PDALPVVKS------IAPANHTVCSGTSTLCKLVSWWNTEGEN--RESALLLHQADW 218 (333)
Q Consensus 148 ~v~vD~~~G~pl~p~i~W~D~R-~~~~~~l~~------~~~~~g~~~~~~~~l~kll~Wl~~~~Pe--~k~~~~l~~~dy 218 (333)
++++|+ +|+|++|+|+|+|.| .++++++.+ +++.+|.++.+.++++||+ |+++|+|+ +++++|+.++||
T Consensus 80 ~v~~D~-~G~~l~p~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~-Wl~~~~P~~~~~~~~~l~~~dy 157 (454)
T TIGR02627 80 FVLLDQ-NGQRVGDPVSYRDSRTDGVMAQVQSELGKEAIYQRTGIQFLPFNTLYQLR-ALTEQQPDLLEKVAHFLLIPDY 157 (454)
T ss_pred EEEEcC-CCCCccCceecCCCCCHHHHHHHHhhcCHHHHHHHhCCCcCCccHHHHHH-HHHHhChhHHHHHHHhCCHHHH
Confidence 999999 999999999999999 467777643 4556888888999999999 99999999 999999999999
Q ss_pred HHHHHhcccceeehhhhhhcC-ccCCCCCCChHhhCC--CcCCCCCCCcCCCccccccCHHHHHHhCCCCCceEEE-cCc
Q 037497 219 LLWLLHGKLGLSDYNNALKVG-YDPELESYPPWLLSQ--PYSQLLPSVQAPGTSIGYLKEGIRTEFGMFLFHLTCH-WWK 294 (333)
Q Consensus 219 l~~~LTG~~~~~d~S~As~tg-~d~~~~~W~~~ll~~--~~~~~LP~vv~~g~~iG~l~~~~A~~~GL~~g~pV~~-G~~ 294 (333)
|.|+|||+.+ +|+|+|++|+ ||+++++|++++++. +++++||+|+++++++|.+.+ .|+ +++||++ |+|
T Consensus 158 l~~~LTG~~~-~d~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~lP~l~~~~~~~G~~~~-----~gl-~g~pVv~~g~~ 230 (454)
T TIGR02627 158 LNYRLTGKKV-WEYTNATTTQLVNINTDDWDEDLLAYLGVPAAWFGRPTHPGNVIGLWEC-----PQG-NQIPVVAVATH 230 (454)
T ss_pred HHHheeCCce-eeeehhhhcccccCCCCCcCHHHHHHcCCCHHHcCCccCCCCeeEEeec-----ccC-CCCCEEEECCc
Confidence 9999999998 9999999999 999999999999986 556899999999999998764 366 7899998 999
Q ss_pred chHHhhhhhccee
Q 037497 295 PTEHQTIVFLCIC 307 (333)
Q Consensus 295 D~~aa~~g~g~~~ 307 (333)
|++|+++|+|++.
T Consensus 231 D~~aa~~g~g~~~ 243 (454)
T TIGR02627 231 DTASAVVAAPLQG 243 (454)
T ss_pred hHHHHHhcCCCCC
Confidence 9999999999874
No 19
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=100.00 E-value=9.1e-37 Score=299.59 Aligned_cols=248 Identities=19% Similarity=0.285 Sum_probs=212.8
Q ss_pred CceEEEEEeCccCceEEEEeCC-CcEEEEEEEeecCcCC--ccccccHHHHHHHHHHHHHhchhc---CCCCccEEEEec
Q 037497 70 ERLYLGMDFGTSGARFAIINKD-GTILSEGKKEYPKFTT--EESIDWLRSWKVTLFSLLEAVPVN---LRPLIASISIDG 143 (333)
Q Consensus 70 ~~~~lGIDiGTTsiKa~l~D~~-G~il~~~~~~~~~~~p--g~~e~d~~~~~~~i~~~l~~l~~~---~~~~I~aIgis~ 143 (333)
++|+||||+||.|.|+++||.. |++|+.+.+||+..++ ...||+++++|++++++++.+.++ ++.+|++|||++
T Consensus 2 ~~~~iGvDvGTgSaRA~v~D~~~G~~la~a~~p~~~~~~~~~~~~q~s~d~~~av~~aVr~~v~~agv~~~~V~gIGvDa 81 (544)
T COG1069 2 MAYVIGVDVGTGSARAGVFDCQTGTLLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDVVAKAGVDPADVVGIGVDA 81 (544)
T ss_pred ccEEEEEeecCCceeEEEEEcCCCcchhhcccceeccccCccccccCHHHHHHHHHHHHHHHHHHcCCChhHeeEEEEcc
Confidence 5799999999999999999976 9999999999998875 457899999999999998887765 567899999999
Q ss_pred CCceEEEEeCCCCcccc---------CCcccCCChH-HHHHHHHHh----ccCCCCCCCChhHHHHHHHHHHHcCcc--c
Q 037497 144 TSATTIIIDSNSGEPLW---------RPFLYNESCP-DALPVVKSI----APANHTVCSGTSTLCKLVSWWNTEGEN--R 207 (333)
Q Consensus 144 ~~~s~v~vD~~~G~pl~---------p~i~W~D~R~-~~~~~l~~~----~~~~g~~~~~~~~l~kll~Wl~~~~Pe--~ 207 (333)
+ +|++++|+ +|+|+. ++++|+|.|+ ++++++++. +...|..+++.+..|||+ |+++|.|+ +
T Consensus 82 T-cSlvv~d~-~g~pl~v~~~~~~~~~vilWmDHrA~~EAe~in~~~~~~L~~~GG~~SpEm~~PKlm-wl~~~~p~~~~ 158 (544)
T COG1069 82 T-CSLVVIDR-DGNPLAVLPEFPNNPNVILWMDHRAVEEAEEINATCHPVLDYYGGKISPEMMIPKLM-WLKREAPAVWE 158 (544)
T ss_pred e-eeeEEECC-CCCeeccCCCCCCCCceEEeccchHHHHHHHHHhhchHHHHhhCCccChhhhHHHHH-HHHhhChHHHH
Confidence 9 99999999 899884 2578999996 889998753 334455569999999999 99999999 9
Q ss_pred ccceeeehHHHHHHHHhcccceeehhhhhhcC-ccC-CCCCCChHhhCCC-------cCCCCC-CCcCCCccccccCHHH
Q 037497 208 ESALLLHQADWLLWLLHGKLGLSDYNNALKVG-YDP-ELESYPPWLLSQP-------YSQLLP-SVQAPGTSIGYLKEGI 277 (333)
Q Consensus 208 k~~~~l~~~dyl~~~LTG~~~~~d~S~As~tg-~d~-~~~~W~~~ll~~~-------~~~~LP-~vv~~g~~iG~l~~~~ 277 (333)
++.+|+.+.|||.|+|||+.. -+.+++.... |.. +.+.|++++++.+ ....|| ++++.|+.+|.+++++
T Consensus 159 ~a~~~fdl~D~l~~~ltG~~~-Rs~Ct~~~Kw~~~~~~~~~~~~~~f~~ig~~~l~~~~~~l~~~i~~~g~~vg~Lt~e~ 237 (544)
T COG1069 159 RAAHIFDLADWLTWKLTGSIA-RSRCTAGCKWNWLEHEGGLWSADFFDKIGLDDLRELDSKLPEDIVPAGEPVGGLTPEA 237 (544)
T ss_pred HhhhhhhHHHHHHHHhhcchh-hccccceeeeeeeccccCCCCHHHHHhcCchhhhcccccCCcccccCCccccccCHHH
Confidence 999999999999999999887 4555554333 776 5666999999751 125577 6899999999999999
Q ss_pred HHHhCCCCCceEEEcCcchHHhhhhhcceeeeecCeEEEEEecCCcc
Q 037497 278 RTEFGMFLFHLTCHWWKPTEHQTIVFLCICIVINNKFSQISCSSDCR 324 (333)
Q Consensus 278 A~~~GL~~g~pV~~G~~D~~aa~~g~g~~~~~i~g~~~~is~~s~~~ 324 (333)
|+++||++++.|..|..|..++++|++... .++..+|.++|+|.
T Consensus 238 A~~lGL~~~~~Vs~g~IDAhag~~Gv~~~~---~~~l~~I~GTStC~ 281 (544)
T COG1069 238 AQELGLPEGTVVSAGIIDAHAGAVGVGGAQ---PGSLAMIAGTSTCH 281 (544)
T ss_pred HHHhCCCCCcEEeccceeccccccccccCC---CCeEEEEeccceEE
Confidence 999999999999999999999999987554 78889999999997
No 20
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=100.00 E-value=2.8e-35 Score=295.36 Aligned_cols=212 Identities=17% Similarity=0.096 Sum_probs=180.9
Q ss_pred EEEeCCCcEEEEE-EEeecCc---CCccccccHHHHHHHHHHHHHhchhcCCCCccEEEEecCCceEEEEeCCCCccccC
Q 037497 86 AIINKDGTILSEG-KKEYPKF---TTEESIDWLRSWKVTLFSLLEAVPVNLRPLIASISIDGTSATTIIIDSNSGEPLWR 161 (333)
Q Consensus 86 ~l~D~~G~il~~~-~~~~~~~---~pg~~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~~~~s~v~vD~~~G~pl~p 161 (333)
+-+|.+|+.+... ...++.. .+++.++|++.||+.+.++++++.. ...+|.+|||++|++++++||+ +|+|++|
T Consensus 3 ~~~~~~~~~~~~~e~~r~~~~~~~~~~~~~~d~~~~~~~i~~~l~~~~~-~~~~I~~Igis~q~~~~v~lD~-~G~pL~p 80 (471)
T PRK10640 3 ARYERECRSLTLREIHRFNNGLHSQDGFDTWDVDSLESAIRLGLNKVCE-EGIRIDSIGIDTWGVDYVLLDK-QGQRVGL 80 (471)
T ss_pred eEEcCCCceEEEEEEEecCCCCeeeCCeeEECHHHHHHHHHHHHHHHhh-cCCCccEEEEcCCcccEEEECC-CCCCcCC
Confidence 3466655555332 2223222 2467889999999999999999876 3567999999999999999999 9999999
Q ss_pred CcccCCChH-HHHHHHHH------hccCCCCCCCChhHHHHHHHHHHHcCcc--cccceeeehHHHHHHHHhcccceeeh
Q 037497 162 PFLYNESCP-DALPVVKS------IAPANHTVCSGTSTLCKLVSWWNTEGEN--RESALLLHQADWLLWLLHGKLGLSDY 232 (333)
Q Consensus 162 ~i~W~D~R~-~~~~~l~~------~~~~~g~~~~~~~~l~kll~Wl~~~~Pe--~k~~~~l~~~dyl~~~LTG~~~~~d~ 232 (333)
+|+|+|.|+ ++++++.+ +++.+|.++.+.++++||+ |+++|+|+ ++++++++++|||.|+|||+.+ +|+
T Consensus 81 ai~w~D~Ra~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~-Wl~~~~P~~~~~~~~~l~~~dyl~~~LTG~~~-~d~ 158 (471)
T PRK10640 81 PVSYRDSRTDGVMAQAQQQLGKRDIYRRSGIQFLPFNTLYQLR-ALTEQQPELIAQVAHALLIPDYFSYRLTGKMN-WEY 158 (471)
T ss_pred ceeccCCCCHHHHHHHHHhcCHHHHHHHhCCCCCCccHHHHHH-HHHHhChHHHHHhhHeecHHHHHHHHHhCCcc-eee
Confidence 999999994 67766643 4567898889999999999 99999999 9999999999999999999998 999
Q ss_pred hhhhhcC-ccCCCCCCChHhhCC--CcCCCCCCCcCCCccccccCHHHHHHhCCCCCceEEE-cCcchHHhhhhhccee
Q 037497 233 NNALKVG-YDPELESYPPWLLSQ--PYSQLLPSVQAPGTSIGYLKEGIRTEFGMFLFHLTCH-WWKPTEHQTIVFLCIC 307 (333)
Q Consensus 233 S~As~tg-~d~~~~~W~~~ll~~--~~~~~LP~vv~~g~~iG~l~~~~A~~~GL~~g~pV~~-G~~D~~aa~~g~g~~~ 307 (333)
|+|++|+ ||+++++|++++++. ++.++||+|+++++++|.+++++ | +++||++ |+||++|+++|+|++.
T Consensus 159 s~as~t~l~d~~~~~W~~ell~~~Gi~~~~LP~lv~~~~~~G~v~~~~----g--~g~pVv~~g~~D~~aa~~g~g~~~ 231 (471)
T PRK10640 159 TNATTTQLVNINSDDWDESLLAWSGAPKAWFGRPTHPGNVIGHWICPQ----G--NEIPVVAVASHDTASAVIASPLND 231 (471)
T ss_pred cHhhhccccCCCcCCcCHHHHHHcCCCHHHcCCCcCCCccceeeeccc----C--CCCCEEEeCCCcHHHHhhccCCCC
Confidence 9999999 999999999999986 45689999999999999987763 5 6899998 7999999999999864
No 21
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=99.97 E-value=1.1e-30 Score=258.43 Aligned_cols=232 Identities=19% Similarity=0.223 Sum_probs=198.1
Q ss_pred CceEEEEEeCccCceEEEEe-CCCcEEEEEEEeecCcCC--ccccccHHHHHHHHHHHHHhchhc------CCCCccEEE
Q 037497 70 ERLYLGMDFGTSGARFAIIN-KDGTILSEGKKEYPKFTT--EESIDWLRSWKVTLFSLLEAVPVN------LRPLIASIS 140 (333)
Q Consensus 70 ~~~~lGIDiGTTsiKa~l~D-~~G~il~~~~~~~~~~~p--g~~e~d~~~~~~~i~~~l~~l~~~------~~~~I~aIg 140 (333)
+++++|||+||||+|++||| .+|+++..+..++....| ++.||+|.++|++++++++++... ....|.+||
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~~~e~l~~~~~~i~~~~~~~~~~eq~p~eI~~~V~~ci~~~~e~l~~~~~~~~~~~~ig 84 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAKNGELLSLAQKEITQEFPKEGWVEQDPKEIWQAVCRCIEKACEKLGVLNIKVVGATCIG 84 (516)
T ss_pred cceEEEEEcCCCceEEEEEecCCCccceeeeeeeeeecCCCCeEEeCHHHHHHHHHHHHHHHHHhhccccccccccEEEE
Confidence 47999999999999999999 789999999888877764 789999999999999999876543 234588899
Q ss_pred EecCCceEEEEeCCCCccccCCcccCCChH-HHHHHHHHh--------ccCCCCCCCChhHHHHHHHHHHHcCcc---cc
Q 037497 141 IDGTSATTIIIDSNSGEPLWRPFLYNESCP-DALPVVKSI--------APANHTVCSGTSTLCKLVSWWNTEGEN---RE 208 (333)
Q Consensus 141 is~~~~s~v~vD~~~G~pl~p~i~W~D~R~-~~~~~l~~~--------~~~~g~~~~~~~~l~kll~Wl~~~~Pe---~k 208 (333)
++.|+++.++|++.+|+|++++|.|+|.|+ .+++++... .+..|.++++.+..+||+ ||++|.|+ .+
T Consensus 85 v~~qr~~~v~w~~~tg~p~~niI~W~D~Ra~~~~~~ln~~~~~~~~~~~~~~Gl~~s~~f~~~KL~-Wl~dn~~~~~~~~ 163 (516)
T KOG2517|consen 85 VVNQREGSVLWNKRTGEPLTNIIVWMDHRAVSEVEELNSSTPSNLFLPRPYCGLPVSPEFSAPKLR-WLLDNVPEVLKAK 163 (516)
T ss_pred EEecCCceEEeecCCCCcccceEEeeccccHHHHHHHHhcCCchhcccccccCCccccccchheeh-HHhhhCHHHHHHH
Confidence 999999999999999999999999999995 788888642 145788889999999999 99999999 56
Q ss_pred cceeeehHHHHHHHHh---cc---cceeehhhhhhcC-ccCCCCCCChHhhCC--CcCCCCCCCcCCCccccccCHHHHH
Q 037497 209 SALLLHQADWLLWLLH---GK---LGLSDYNNALKVG-YDPELESYPPWLLSQ--PYSQLLPSVQAPGTSIGYLKEGIRT 279 (333)
Q Consensus 209 ~~~~l~~~dyl~~~LT---G~---~~~~d~S~As~tg-~d~~~~~W~~~ll~~--~~~~~LP~vv~~g~~iG~l~~~~A~ 279 (333)
.+..+...+|+.|+++ +. .. +|.++|++++ ||...+.|+..++++ +..+.||++..+++++|.+.. .
T Consensus 164 ~~~~~~~~~~~twl~~~~t~~~~~~~-~d~~Nas~t~~f~~~~~~wd~~~~~f~~lp~~llp~i~s~~e~~g~~~~---~ 239 (516)
T KOG2517|consen 164 EEGGFDLGTFDTWLATGLTGRSSCHC-TDVTNASRTGLFNTESGLWDLKLLDFFGLPLNLLPDIRSSSEVYGTTAA---G 239 (516)
T ss_pred HhcccchhhhhhheeecCCccceecc-ccccccccccccchhhhhhhhhhhhhhCCCcccCCcccccccccccccc---c
Confidence 6667777776666654 43 34 8999999999 999999999999986 457889999999999997654 4
Q ss_pred HhCCCCCceEEEcCcchHHhhhhhcce
Q 037497 280 EFGMFLFHLTCHWWKPTEHQTIVFLCI 306 (333)
Q Consensus 280 ~~GL~~g~pV~~G~~D~~aa~~g~g~~ 306 (333)
.+|+.+|+||-+..+|++|+.+|..+.
T Consensus 240 ~~~~~~g~~vs~~lgDq~Aa~vg~~~~ 266 (516)
T KOG2517|consen 240 DLGLLEGTPVSSCLGDQQASMVGQMCY 266 (516)
T ss_pred ccccccCcceeechhhHHHHHHhHhhh
Confidence 566999999999999999998887655
No 22
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=99.90 E-value=2.7e-23 Score=199.99 Aligned_cols=261 Identities=14% Similarity=0.136 Sum_probs=215.7
Q ss_pred ceEEEEEeCccCceEEEEeCCCcEEEEEEEeecCcCC------c-------cc-cccHHHHHHHHHHHHHhchhc--CCC
Q 037497 71 RLYLGMDFGTSGARFAIINKDGTILSEGKKEYPKFTT------E-------ES-IDWLRSWKVTLFSLLEAVPVN--LRP 134 (333)
Q Consensus 71 ~~~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~p------g-------~~-e~d~~~~~~~i~~~l~~l~~~--~~~ 134 (333)
+.|||+|++|+.+|++++|.++++++.+.+.+....| | .. +...-.|.+++.-+++++..+ +..
T Consensus 9 ~~fLG~DlSTQqlKaviids~LnVv~~~~V~Fd~DLpef~T~~GV~~~g~~~~i~~PV~MWveAlDlll~kl~~~~~d~~ 88 (545)
T KOG2531|consen 9 RSFLGFDLSTQQLKAVIIDSNLNVVHTEAVHFDTDLPEFGTKNGVYRNGGGETITSPVLMWVEALDLLLDKLREAGFDLS 88 (545)
T ss_pred ceeeeeecccceeEEEEEcCCccEEEEEEEeeccccccccccCceEeCCCCcEEeccHHHHHHHHHHHHHHHHHcCCCHH
Confidence 4699999999999999999999999999887765433 1 11 233347888988888888764 446
Q ss_pred CccEEEEecCCceEEEEeCCCCc-ccc-------------------CCcccCCCh-HHHHHHHHH-------hccCCCCC
Q 037497 135 LIASISIDGTSATTIIIDSNSGE-PLW-------------------RPFLYNESC-PDALPVVKS-------IAPANHTV 186 (333)
Q Consensus 135 ~I~aIgis~~~~s~v~vD~~~G~-pl~-------------------p~i~W~D~R-~~~~~~l~~-------~~~~~g~~ 186 (333)
+|.||+=++|.|+-|+|.+ .++ .|. ..-.|+|.. +.++++++. +...||..
T Consensus 89 kV~aiSGagQQHGsVyWs~-ga~~~L~~Ld~~~~L~eQle~aF~v~~sP~WmDsSTtkQC~ElE~~VGG~~~la~LTGSR 167 (545)
T KOG2531|consen 89 KVMAISGAGQQHGSVYWSK-GAENALESLDPEKSLHEQLESAFSVQTSPIWMDSSTTKQCQELEEAVGGAQELAKLTGSR 167 (545)
T ss_pred Hhhhhcccccccceeeehh-hhHHHHhcCChhhHHHHHHHHhhcccCCCcccccchHHHHHHHHHHhccHHHHHHhhcch
Confidence 7999999999999999987 442 221 123699997 467888864 33457887
Q ss_pred CCChhHHHHHHHHHHHcCcc--cccceeeehHHHHHHHHhcccceeehhhhhhcC-ccCCCCCCChHhhCC---CcCCCC
Q 037497 187 CSGTSTLCKLVSWWNTEGEN--RESALLLHQADWLLWLLHGKLGLSDYNNALKVG-YDPELESYPPWLLSQ---PYSQLL 260 (333)
Q Consensus 187 ~~~~~~l~kll~Wl~~~~Pe--~k~~~~l~~~dyl~~~LTG~~~~~d~S~As~tg-~d~~~~~W~~~ll~~---~~~~~L 260 (333)
.+--|+.+|++ -+.+++|| +++.++-.+..|++..|-|..+.+|+|.++++. ||++++.|+.++|+. ..+++|
T Consensus 168 Ay~RFTGpQIr-Ki~~~~pe~Ye~TerISLVSsFlaSlllG~~a~id~sDgsGMNL~dIr~k~ws~~~L~~~apdL~~KL 246 (545)
T KOG2531|consen 168 AYERFTGPQIR-KIYQQEPEAYEKTERISLVSSFLASLLLGSYAPIDESDGSGMNLLDIRKKKWSKALLDACAPDLEEKL 246 (545)
T ss_pred hhhhcccHHHH-HHHHhChHhhhccceeehHHHHHHHHHhccccceecccccCchHHHHhhhhhhHHHHhhhChhHHHHh
Confidence 77788999999 88899999 999999999999999999998889999999998 999999999999986 236788
Q ss_pred CCCcCCCccccccCHHHHHHhCCCCCceEEEcCcchHHhhhhhcc----eeeeecCeEEEEEecCCcccCCCCCccC
Q 037497 261 PSVQAPGTSIGYLKEGIRTEFGMFLFHLTCHWWKPTEHQTIVFLC----ICIVINNKFSQISCSSDCRTGNLGDIFC 333 (333)
Q Consensus 261 P~vv~~g~~iG~l~~~~A~~~GL~~g~pV~~G~~D~~aa~~g~g~----~~~~i~g~~~~is~~s~~~~~~~~~~~~ 333 (333)
...+++..+.|+|.+.+-++||+++++.|++-.||+.++..|+.. +..+++.....+.-+....+-+.|||||
T Consensus 247 ~~pv~~~~~~G~I~~Yfv~r~gF~p~C~Vv~~tGDNpsslagL~l~~~dl~iSLGTSdTv~m~t~~~~p~~egHvf~ 323 (545)
T KOG2531|consen 247 GKPVPPMSIAGTISKYFVKRYGFPPDCKVVPSTGDNPSSLAGLPLRPGDLLISLGTSDTVFMVTKEYHPSPEGHVFC 323 (545)
T ss_pred CCCCCccccccchhhhhHhhcCCCCCCEEEecCCCChHHhhCccccCCceEEEecCcceEEEEcCCCCCCCCcceec
Confidence 888999999999999999999999999999999999999888653 4556666666667777888889999999
No 23
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.46 E-value=5e-07 Score=83.61 Aligned_cols=70 Identities=14% Similarity=0.243 Sum_probs=49.9
Q ss_pred eEEEEEeCccCceEEEEeCCCcEEEEEEEeecCcCCccccccHHHHHHHHHHHHHhchhcCCCCccEEEEecCCceEEEE
Q 037497 72 LYLGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVNLRPLIASISIDGTSATTIII 151 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~~~~s~v~v 151 (333)
|++|||+|||++|++++| +|++++..+.+.. .+++...+.+.+++++... ...+|.+|+++++++++++.
T Consensus 1 ~~lGIDiGtts~K~vl~d-~g~il~~~~~~~~--------~~~~~~~~~l~~~~~~~~~-~~~~i~~i~~Tg~~~~~v~~ 70 (248)
T TIGR00241 1 ISLGIDSGSTTTKMVLME-DGKVIGYKWLDTT--------PVIEETARAILEALKEAGI-GLEPIDKIVATGYGRHKVGF 70 (248)
T ss_pred CEEEEEcChhheEEEEEc-CCEEEEEEEecCC--------CCHHHHHHHHHHHHHHcCC-ChhheeEEEEECCCcccccc
Confidence 479999999999999999 8999987765221 2233333444444444322 34679999999999998874
No 24
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=98.35 E-value=4.2e-06 Score=77.68 Aligned_cols=93 Identities=12% Similarity=0.132 Sum_probs=67.2
Q ss_pred eEEEEEeCccCceEEEEeCCCcEEEEEEEeecCcCCccccccHHHHHHHHHHHHHhchhcCCCCccEEEEecCCceEEEE
Q 037497 72 LYLGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVNLRPLIASISIDGTSATTIII 151 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~~~~s~v~v 151 (333)
+++|||+|+|++|++++|.+|+++.+.+.+++ ..+++++.+.+.+++++... ....+.+|||+.++ ++
T Consensus 1 ~~lgidiggt~i~~~l~d~~g~i~~~~~~~~~-------~~~~~~~~~~i~~~i~~~~~-~~~~~~gIgv~~pG----~v 68 (256)
T PRK13311 1 MYYGFDMGGTKIELGVFDENLQRIWHKRVPTP-------REDYPQLLQILRDLTEEADT-YCGVQGSVGIGIPG----LP 68 (256)
T ss_pred CEEEEEECCCcEEEEEECCCCCEEEEEEecCC-------CcCHHHHHHHHHHHHHHHHh-hcCCCceEEEEecC----cE
Confidence 36999999999999999999999987766553 24567788888888887753 23345699999998 78
Q ss_pred eCCCCccccCCcc-cCCChHHHHHHHHH
Q 037497 152 DSNSGEPLWRPFL-YNESCPDALPVVKS 178 (333)
Q Consensus 152 D~~~G~pl~p~i~-W~D~R~~~~~~l~~ 178 (333)
|.++|....+.+. |.+. +..+++.+
T Consensus 69 d~~~g~i~~~~~~~w~~~--~l~~~l~~ 94 (256)
T PRK13311 69 NADDGTVFTANVPSAMGQ--PLQADLSR 94 (256)
T ss_pred ECCCCEEEccCCCcccCC--ChHHHHHH
Confidence 9856765544444 7654 33344444
No 25
>PRK09698 D-allose kinase; Provisional
Probab=98.27 E-value=7.6e-06 Score=77.52 Aligned_cols=88 Identities=15% Similarity=0.215 Sum_probs=59.3
Q ss_pred CceEEEEEeCccCceEEEEeCCCcEEEEEEEeecCcCCccccccHHHHHHHHHHHHHhchhcCCCCccEEEEecCCceEE
Q 037497 70 ERLYLGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVNLRPLIASISIDGTSATTI 149 (333)
Q Consensus 70 ~~~~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~~~~s~v 149 (333)
..|++|||+|.|++|++++|.+|+++.+.+.+++. ...++. .+.+.+.++++..+...++.+|||+.++
T Consensus 3 ~~~~lgidig~t~i~~~l~d~~g~i~~~~~~~~~~------~~~~~~-~~~l~~~i~~~~~~~~~~i~gigia~pG---- 71 (302)
T PRK09698 3 KNVVLGIDMGGTHIRFCLVDAEGEILHCEKKRTAE------VIAPDL-VSGLGEMIDEYLRRFNARCHGIVMGFPA---- 71 (302)
T ss_pred ccEEEEEEcCCcEEEEEEEcCCCCEEEEEEeCCcc------ccchHH-HHHHHHHHHHHHHHcCCCeeEEEEeCCc----
Confidence 46899999999999999999999999877665541 112222 4444444444433212579999999998
Q ss_pred EEeCCCCcccc-CCcc---cCCC
Q 037497 150 IIDSNSGEPLW-RPFL---YNES 168 (333)
Q Consensus 150 ~vD~~~G~pl~-p~i~---W~D~ 168 (333)
++|.++|..+. +.+. |.+.
T Consensus 72 ~vd~~~g~i~~~~~~~~~~~~~~ 94 (302)
T PRK09698 72 LVSKDRRTVISTPNLPLTALDLY 94 (302)
T ss_pred ceeCCCCEEEecCCCCccccccC
Confidence 88885565443 4444 5544
No 26
>PRK09557 fructokinase; Reviewed
Probab=98.24 E-value=7.2e-06 Score=77.78 Aligned_cols=83 Identities=12% Similarity=0.128 Sum_probs=63.2
Q ss_pred eEEEEEeCccCceEEEEeCCCcEEEEEEEeecCcCCccccccHHHHHHHHHHHHHhchhcCCCCccEEEEecCCceEEEE
Q 037497 72 LYLGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVNLRPLIASISIDGTSATTIII 151 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~~~~s~v~v 151 (333)
++||||+|+|++|++++|.+|+++.+.+.+++ ..+++++.+.+.+.++++.. ....+.+|||+.++ ++
T Consensus 1 ~~lgidig~t~~~~~l~d~~g~i~~~~~~~~~-------~~~~~~~~~~i~~~i~~~~~-~~~~~~gIgi~~pG----~v 68 (301)
T PRK09557 1 MRIGIDLGGTKIEVIALDDAGEELFRKRLPTP-------RDDYQQTIEAIATLVDMAEQ-ATGQRGTVGVGIPG----SI 68 (301)
T ss_pred CEEEEEECCCcEEEEEECCCCCEEEEEEecCC-------CCCHHHHHHHHHHHHHHHHh-hcCCceEEEecCcc----cC
Confidence 37999999999999999999999987666553 13566777877777777654 23457899999998 88
Q ss_pred eCCCCccccCCcccC
Q 037497 152 DSNSGEPLWRPFLYN 166 (333)
Q Consensus 152 D~~~G~pl~p~i~W~ 166 (333)
|.++|....+...|.
T Consensus 69 d~~~g~i~~~~~~~~ 83 (301)
T PRK09557 69 SPYTGLVKNANSTWL 83 (301)
T ss_pred cCCCCeEEecCCccc
Confidence 876777665555673
No 27
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=98.22 E-value=8.7e-06 Score=77.23 Aligned_cols=84 Identities=14% Similarity=0.167 Sum_probs=64.0
Q ss_pred EEEEEeCccCceEEEEeCCCcEEEEEEEeecCcCCccccccHHHHHHHHHHHHHhchhcCCCCccEEEEecCCceEEEEe
Q 037497 73 YLGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVNLRPLIASISIDGTSATTIIID 152 (333)
Q Consensus 73 ~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~~~~s~v~vD 152 (333)
++|||+|+|++|++++|.+|+++.+.+.+++ ..+++++.+.+.+.++++.. ....+.+|||+.+| ++|
T Consensus 2 ~lgidig~t~i~~~l~d~~g~i~~~~~~~~~-------~~~~~~~~~~i~~~i~~~~~-~~~~~~~igia~pG----~vd 69 (303)
T PRK13310 2 YYGFDIGGTKIELGVFNEKLELQWEERVPTP-------RDSYDAFLDAVCELVAEADQ-RFGCKGSVGIGIPG----MPE 69 (303)
T ss_pred eEEEEeCCCcEEEEEECCCCcEEEEEEecCC-------CcCHHHHHHHHHHHHHHHHh-hcCCcceEEEeCCC----ccc
Confidence 6999999999999999999999987765543 24577888888888887754 22345689999998 889
Q ss_pred CCCCccccCCcc-cCCC
Q 037497 153 SNSGEPLWRPFL-YNES 168 (333)
Q Consensus 153 ~~~G~pl~p~i~-W~D~ 168 (333)
.++|....+.+. |.+.
T Consensus 70 ~~~g~~~~~~~~~w~~~ 86 (303)
T PRK13310 70 TEDGTLYAANVPAASGK 86 (303)
T ss_pred CCCCEEeccCcccccCC
Confidence 756765555554 7654
No 28
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=98.07 E-value=2.4e-05 Score=74.50 Aligned_cols=87 Identities=21% Similarity=0.244 Sum_probs=57.5
Q ss_pred CceEEEEEeCccCceEEEEeCCCcEEEEEEEeecCcCCccccccHHHHHHHHHHHHHhchhcC--CCCccEEEEecCCce
Q 037497 70 ERLYLGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVNL--RPLIASISIDGTSAT 147 (333)
Q Consensus 70 ~~~~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~~~--~~~I~aIgis~~~~s 147 (333)
+.+++|||||+|++|++++|.+|+++...+.+++.. ...+.+.+.+.+.++++.... ..++.+||++.++
T Consensus 5 ~~~~lgidIggt~i~~~l~d~~g~~l~~~~~~~~~~------~~~~~~~~~i~~~i~~~~~~~~~~~~~iGIgi~~pg-- 76 (314)
T COG1940 5 AMTVLGIDIGGTKIKVALVDLDGEILLRERIPTPTP------DPEEAILEAILALVAELLKQAQGRVAIIGIGIPGPG-- 76 (314)
T ss_pred CcEEEEEEecCCEEEEEEECCCCcEEEEEEEecCCC------CchhHHHHHHHHHHHHHHHhcCCcCceEEEEeccce--
Confidence 458999999999999999999999999888888632 222445555555555554321 3457777777764
Q ss_pred EEEEeCCCC-ccccCCcccCC
Q 037497 148 TIIIDSNSG-EPLWRPFLYNE 167 (333)
Q Consensus 148 ~v~vD~~~G-~pl~p~i~W~D 167 (333)
.+|. .. ....|.+.|.+
T Consensus 77 --~~~~-~~~~~~~~~~~~~~ 94 (314)
T COG1940 77 --DVDN-GTVIVPAPNLGWWN 94 (314)
T ss_pred --eccC-CcEEeecCCCCccc
Confidence 6665 32 22334455544
No 29
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=98.04 E-value=3.3e-05 Score=67.21 Aligned_cols=89 Identities=20% Similarity=0.240 Sum_probs=66.7
Q ss_pred EEEeCccCceEEEEeCCCcEEEEEEEeecCcCCccccccHHHHHHHHHHHHHhchhcCCCCccEEEEecCCceEEEEeCC
Q 037497 75 GMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVNLRPLIASISIDGTSATTIIIDSN 154 (333)
Q Consensus 75 GIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~~~~s~v~vD~~ 154 (333)
|||+|+++++++++|.+|+++.+.+.+++ .+++++.+.+.+.++++.... ... +|||+.++ ++|.+
T Consensus 1 gidig~~~i~~~l~d~~g~ii~~~~~~~~--------~~~~~~~~~l~~~i~~~~~~~-~~~-gIgi~~pG----~v~~~ 66 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDLDGEIIYSESIPTP--------TSPEELLDALAELIERLLADY-GRS-GIGISVPG----IVDSE 66 (179)
T ss_dssp EEEEESSEEEEEEEETTSCEEEEEEEEHH--------SSHHHHHHHHHHHHHHHHHHH-TCE-EEEEEESS----EEETT
T ss_pred CEEECCCEEEEEEECCCCCEEEEEEEECC--------CCHHHHHHHHHHHHHHHHhhc-ccc-cEEEeccc----cCcCC
Confidence 79999999999999999999998877663 567778888888888776531 222 99999998 89995
Q ss_pred CCcccc-CCcccCCChHHHHHHHHHh
Q 037497 155 SGEPLW-RPFLYNESCPDALPVVKSI 179 (333)
Q Consensus 155 ~G~pl~-p~i~W~D~R~~~~~~l~~~ 179 (333)
+|..+. |...|.+.. ..+.|++.
T Consensus 67 ~g~i~~~~~~~~~~~~--l~~~l~~~ 90 (179)
T PF00480_consen 67 KGRIISSPNPGWENIP--LKEELEER 90 (179)
T ss_dssp TTEEEECSSGTGTTCE--HHHHHHHH
T ss_pred CCeEEecCCCCcccCC--HHHHhhcc
Confidence 556654 445688864 33445443
No 30
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=97.99 E-value=3.9e-05 Score=73.06 Aligned_cols=83 Identities=16% Similarity=0.289 Sum_probs=60.1
Q ss_pred EEEEeCccCceEEEEeCCCcEEEEEEEeecCcCCccccccHHHHHHHHHHHHHhchhc---CCCCccEEEEecCCceEEE
Q 037497 74 LGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVN---LRPLIASISIDGTSATTII 150 (333)
Q Consensus 74 lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~~---~~~~I~aIgis~~~~s~v~ 150 (333)
||||+|+|++|++++|.+|+++.+.+.+.+ .+++++.+.+.+.++++.++ ...+|.+|||+.+| +
T Consensus 1 lgidig~t~~~~~l~d~~g~i~~~~~~~~~--------~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgva~pG----~ 68 (318)
T TIGR00744 1 IGVDIGGTTIKLGVVDEEGNILSKWKVPTD--------TTPETIVDAIASAVDSFIQHIAKVGHEIVAIGIGAPG----P 68 (318)
T ss_pred CEEEeCCCEEEEEEECCCCCEEEEEEeCCC--------CCHHHHHHHHHHHHHHHHHhcCCCccceEEEEEeccc----c
Confidence 589999999999999999999987665442 24566666666666655432 34579999999998 7
Q ss_pred EeCCCCcccc-CCcccCCC
Q 037497 151 IDSNSGEPLW-RPFLYNES 168 (333)
Q Consensus 151 vD~~~G~pl~-p~i~W~D~ 168 (333)
+|.++|.... +.+.|++.
T Consensus 69 vd~~~g~~~~~~~~~w~~~ 87 (318)
T TIGR00744 69 VNRQRGTVYFAVNLDWKQE 87 (318)
T ss_pred ccCCCCEEEecCCCCCCCC
Confidence 8875676443 33458765
No 31
>PRK12408 glucokinase; Provisional
Probab=97.84 E-value=4.6e-05 Score=73.71 Aligned_cols=78 Identities=15% Similarity=0.174 Sum_probs=49.0
Q ss_pred eEEEEEeCccCceEEEEeCCCcE------EEEEEEeecCcCCccccccHHHHHHHHHHHHHhchhcCCCCccEEEEecCC
Q 037497 72 LYLGMDFGTSGARFAIINKDGTI------LSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVNLRPLIASISIDGTS 145 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~~G~i------l~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~~~ 145 (333)
++|++|||+|++|.+|+|++|++ +...+.+++ .. +.+.+.+.+.+++ ..++.+|||+.++
T Consensus 17 ~~L~~DIGGT~i~~al~d~~g~~~~~~~~~~~~~~~t~------~~---~~~~~~i~~~~~~-----~~~~~~igIg~pG 82 (336)
T PRK12408 17 SFVAADVGGTHVRVALVCASPDAAKPVELLDYRTYRCA------DY---PSLAAILADFLAE-----CAPVRRGVIASAG 82 (336)
T ss_pred cEEEEEcChhhhheeEEeccCCccccccccceeEecCC------Cc---cCHHHHHHHHHhc-----CCCcCEEEEEecC
Confidence 58999999999999999988873 333222221 11 1223334444443 2358999999998
Q ss_pred ceEEEEeCCCCccccCCcccCCC
Q 037497 146 ATTIIIDSNSGEPLWRPFLYNES 168 (333)
Q Consensus 146 ~s~v~vD~~~G~pl~p~i~W~D~ 168 (333)
. .++ +|....+.+.|...
T Consensus 83 ~---~~~--~g~v~~~nl~w~~~ 100 (336)
T PRK12408 83 Y---ALD--DGRVITANLPWTLS 100 (336)
T ss_pred C---ceE--CCEEEecCCCCccC
Confidence 3 133 67766566678543
No 32
>PRK00292 glk glucokinase; Provisional
Probab=97.81 E-value=7.3e-05 Score=71.46 Aligned_cols=80 Identities=19% Similarity=0.124 Sum_probs=52.7
Q ss_pred ceEEEEEeCccCceEEEEeC-CCcEEEEEEEeecCcCCccccccHHHHHHHHHHHHHhchhcCCCCccEEEEecCCceEE
Q 037497 71 RLYLGMDFGTSGARFAIINK-DGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVNLRPLIASISIDGTSATTI 149 (333)
Q Consensus 71 ~~~lGIDiGTTsiKa~l~D~-~G~il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~~~~s~v 149 (333)
+++||||||+|++|++++|. +++++.+.+.+++ . .+.+.+.+.+.+++. ...++.+|||+.+|
T Consensus 2 ~~~lgiDIGgT~i~~~l~~~~~~~~~~~~~~~~~------~---~~~~~~~l~~~l~~~---~~~~~~gigIg~pG---- 65 (316)
T PRK00292 2 KPALVGDIGGTNARFALCDWANGEIEQIKTYATA------D---YPSLEDAIRAYLADE---HGVQVRSACFAIAG---- 65 (316)
T ss_pred ceEEEEEcCccceEEEEEecCCCceeeeEEEecC------C---CCCHHHHHHHHHHhc---cCCCCceEEEEEeC----
Confidence 47999999999999999995 5666666555443 1 122444455555441 12368999999998
Q ss_pred EEeCCCCccccCCcccCCC
Q 037497 150 IIDSNSGEPLWRPFLYNES 168 (333)
Q Consensus 150 ~vD~~~G~pl~p~i~W~D~ 168 (333)
++|. + +...+.+.|.+.
T Consensus 66 ~vd~-~-~i~~~n~~w~~~ 82 (316)
T PRK00292 66 PVDG-D-EVRMTNHHWAFS 82 (316)
T ss_pred cccC-C-EEEecCCCcccC
Confidence 8886 3 344445568653
No 33
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=97.80 E-value=7.8e-05 Score=58.52 Aligned_cols=60 Identities=18% Similarity=0.128 Sum_probs=45.0
Q ss_pred eEEEEEeCccCceEEEEeCCCcEEEEEEEeecCcCCccccccHHHHHHHHHHHHHhchhcCCCCccEEEEecCC
Q 037497 72 LYLGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVNLRPLIASISIDGTS 145 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~~~ 145 (333)
.+||||+|+|.+|++++|.+|+++.....+.. .+.+.+++.+.+++++. ++.+|||+.++
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~~g~~~~~~~~~~~--------~~~~~~~~~l~~~i~~~------~~~~i~Ig~pg 61 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDETGKLADPLEVIPR--------TNKEADAARLKKLIKKY------QPDLIVIGLPL 61 (99)
T ss_pred cEEEEccCCCeEEEEEECCCCCEecCEEEEEe--------cCcchHHHHHHHHHHHh------CCCEEEEeCCc
Confidence 37999999999999999999999876655442 12345566666666552 47799999887
No 34
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=97.78 E-value=0.00017 Score=67.91 Aligned_cols=83 Identities=17% Similarity=0.193 Sum_probs=60.2
Q ss_pred EEEEEeCccCceEEEEeCCCcEEEEEEEeecCcCCccccccHHHHHHHHHHHHHhchhcCCCCccEEEEecCCceEEEEe
Q 037497 73 YLGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVNLRPLIASISIDGTSATTIIID 152 (333)
Q Consensus 73 ~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~~~~s~v~vD 152 (333)
++|||+|.|+++++++|.+|+++.+.+.+++ ...+++++.+.+.+.++++.. ++.+|||+.+| ++|
T Consensus 3 ~lgvdig~~~i~~~l~dl~g~i~~~~~~~~~------~~~~~~~~~~~i~~~i~~~~~----~~~~igi~~pG----~vd 68 (291)
T PRK05082 3 TLAIDIGGTKIAAALVGEDGQIRQRRQIPTP------ASQTPEALRQALSALVSPLQA----QADRVAVASTG----IIN 68 (291)
T ss_pred EEEEEECCCEEEEEEEcCCCcEEEEEEecCC------CCCCHHHHHHHHHHHHHHhhh----cCcEEEEeCcc----ccc
Confidence 7999999999999999999999987766654 224567788888888877642 47799999997 677
Q ss_pred CCCCccccC-Cc-ccCCCh
Q 037497 153 SNSGEPLWR-PF-LYNESC 169 (333)
Q Consensus 153 ~~~G~pl~p-~i-~W~D~R 169 (333)
...+..+.+ .+ .|.+..
T Consensus 69 ~~~~~~~~~~~~~~w~~~~ 87 (291)
T PRK05082 69 DGILTALNPHNLGGLLHFP 87 (291)
T ss_pred CCeeEEecCCCCccccCCC
Confidence 522222222 23 487663
No 35
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=97.58 E-value=0.00012 Score=76.75 Aligned_cols=77 Identities=17% Similarity=0.098 Sum_probs=53.2
Q ss_pred eEEEEEeCccCceEEEEeCCCcEEEEEEEeecCcCCccccccHHHHHHHHHHHHHhchhcCCCCccEEEEecCCceEEEE
Q 037497 72 LYLGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVNLRPLIASISIDGTSATTIII 151 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~~~~s~v~v 151 (333)
.+||||||+|++|.+|+|++|+++...+.+++ .. +.+.+.+.+.+++.. ..++.+|||+.+| +|
T Consensus 19 ~~L~iDIGGT~ir~al~~~~g~i~~~~~~~t~------~~---~~~~~~i~~~l~~~~---~~~~~~igig~pG----pV 82 (638)
T PRK14101 19 PRLLADVGGTNARFALETGPGEITQIRVYPGA------DY---PTLTDAIRKYLKDVK---IGRVNHAAIAIAN----PV 82 (638)
T ss_pred CEEEEEcCchhheeeeecCCCcccceeEEecC------CC---CCHHHHHHHHHHhcC---CCCcceEEEEEec----Cc
Confidence 38999999999999999999998776655443 11 234445555555432 2368999999998 88
Q ss_pred eCCCCccccCCcccC
Q 037497 152 DSNSGEPLWRPFLYN 166 (333)
Q Consensus 152 D~~~G~pl~p~i~W~ 166 (333)
|. +. ...+++.|.
T Consensus 83 d~-~~-~~~~nl~w~ 95 (638)
T PRK14101 83 DG-DQ-VRMTNHDWS 95 (638)
T ss_pred cC-Ce-eeecCCCcE
Confidence 86 43 333456685
No 36
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=97.48 E-value=0.00051 Score=65.02 Aligned_cols=68 Identities=13% Similarity=0.182 Sum_probs=40.9
Q ss_pred eEEEEEeCccCceEEEEeCCCcEEEEEEEeecCcCCccccccH-HHHHHHHHHHHHhchhcCCCCccEEEEecCCceEE
Q 037497 72 LYLGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWL-RSWKVTLFSLLEAVPVNLRPLIASISIDGTSATTI 149 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~pg~~e~d~-~~~~~~i~~~l~~l~~~~~~~I~aIgis~~~~s~v 149 (333)
+++|||+|+|++|++|+|. ++++.....++. .++ +...+.+.++++++.. ...++..+++++.+...+
T Consensus 33 ~~~GIDiGStt~K~Vlld~-~~i~~~~~~~tg--------~~~~~~a~~~l~~~l~~~g~-~~~~v~~~~~TGyGr~~~ 101 (293)
T TIGR03192 33 ITCGIDVGSVSSQAVLVCD-GELYGYNSMRTG--------NNSPDSAKNALQGIMDKIGM-KLEDINYVVGTGYGRVNV 101 (293)
T ss_pred EEEEEEeCchhEEEEEEeC-CEEEEEEeecCC--------CCHHHHHHHHHHHHHHHcCC-cccceEEEEEECcchhhc
Confidence 8999999999999999994 676665544332 111 1223334444444432 234577777766664443
No 37
>PRK13318 pantothenate kinase; Reviewed
Probab=97.45 E-value=0.00054 Score=63.76 Aligned_cols=63 Identities=21% Similarity=0.231 Sum_probs=45.7
Q ss_pred EEEEEeCccCceEEEEeCCCcEEEEEEEeecCcCCccccccHHHHHHHHHHHHHhchhcCCCCccEEEEec
Q 037497 73 YLGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVNLRPLIASISIDG 143 (333)
Q Consensus 73 ~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~ 143 (333)
+|+||+|+|++|.+++| +|+++...+.+++ ....++++.+.+.+++++... ...++.+|++++
T Consensus 2 iL~IDIGnT~iK~al~d-~g~i~~~~~~~t~------~~~~~~~~~~~l~~l~~~~~~-~~~~i~~I~iss 64 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYE-GGKLVAHWRISTD------SRRTADEYGVWLKQLLGLSGL-DPEDITGIIISS 64 (258)
T ss_pred EEEEEECCCcEEEEEEE-CCEEEEEEEEeCC------CCCCHHHHHHHHHHHHHHcCC-CcccCceEEEEE
Confidence 68999999999999999 6888877666554 223445666666666655432 234699999997
No 38
>PRK13321 pantothenate kinase; Reviewed
Probab=97.45 E-value=0.00048 Score=64.12 Aligned_cols=63 Identities=16% Similarity=0.201 Sum_probs=47.8
Q ss_pred EEEEEeCccCceEEEEeCCCcEEEEEEEeecCcCCccccccHHHHHHHHHHHHHhchhcCCCCccEEEEec
Q 037497 73 YLGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVNLRPLIASISIDG 143 (333)
Q Consensus 73 ~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~ 143 (333)
+|+||+|+|++|.+++|.+ +++...+.+++ ....++++.+.+.+++++... ...+|.+|++++
T Consensus 2 iL~IDIGnT~ik~gl~~~~-~i~~~~~~~T~------~~~~~~~~~~~l~~l~~~~~~-~~~~i~~i~vss 64 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGD-RLLRSFRLPTD------KSRTSDELGILLLSLFRHAGL-DPEDIRAVVISS 64 (256)
T ss_pred EEEEEECCCeEEEEEEECC-EEEEEEEEecC------CCCCHHHHHHHHHHHHHHcCC-ChhhCCeEEEEe
Confidence 6899999999999999954 77766555554 334567888888888877632 335799999997
No 39
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=97.23 E-value=0.0011 Score=65.30 Aligned_cols=71 Identities=23% Similarity=0.261 Sum_probs=48.6
Q ss_pred CceEEEEEeCccCceEEEEeCCCcEEEEEEEeecCcCCccccccHHHHHHHHHHHHHhchhcCCCCccEEEEecCCceEE
Q 037497 70 ERLYLGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVNLRPLIASISIDGTSATTI 149 (333)
Q Consensus 70 ~~~~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~~~~s~v 149 (333)
+.+++|||+|+|++|++++| +++++.....++. ...+...+.+.+++++... ...+|..|++++.+...+
T Consensus 143 ~g~~lGIDiGSTttK~Vl~d-d~~Ii~~~~~~t~--------~~~~~a~~~l~~~l~~~Gl-~~~di~~i~~TGyGR~~i 212 (404)
T TIGR03286 143 EGLTLGIDSGSTTTKAVVME-DNEVIGTGWVPTT--------KVIESAEEAVERALEEAGV-SLEDVEAIGTTGYGRFTI 212 (404)
T ss_pred CCEEEEEEcChhheeeEEEc-CCeEEEEEEeecc--------cHHHHHHHHHHHHHHHcCC-CccceeEEEeeeecHHHH
Confidence 34899999999999999998 6688877655431 1123334444555555432 346799999999876666
Q ss_pred E
Q 037497 150 I 150 (333)
Q Consensus 150 ~ 150 (333)
.
T Consensus 213 ~ 213 (404)
T TIGR03286 213 G 213 (404)
T ss_pred h
Confidence 4
No 40
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=97.19 E-value=0.00076 Score=63.67 Aligned_cols=31 Identities=32% Similarity=0.605 Sum_probs=28.2
Q ss_pred CCceEEEEEeCccCceEEEEeCCCcEEEEEE
Q 037497 69 GERLYLGMDFGTSGARFAIINKDGTILSEGK 99 (333)
Q Consensus 69 ~~~~~lGIDiGTTsiKa~l~D~~G~il~~~~ 99 (333)
+++|+||||-|+|++|+.|.|.+|+++.+..
T Consensus 3 ~~~~~lGVDGGGTkt~a~l~~~~g~vlg~g~ 33 (301)
T COG2971 3 PMPYFLGVDGGGTKTRAVLADEDGNVLGRGK 33 (301)
T ss_pred CccEEEEEccCCcceEEEEEcCCCcEEEEec
Confidence 4579999999999999999999999998765
No 41
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=97.18 E-value=0.001 Score=61.99 Aligned_cols=67 Identities=21% Similarity=0.246 Sum_probs=42.3
Q ss_pred EEEEeCccCceEEEEeCCCcEEEEEEEeecCcCCccccccHHHHHHHHHHHHHhchhc---CCCCccEEEEecC
Q 037497 74 LGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVN---LRPLIASISIDGT 144 (333)
Q Consensus 74 lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~~---~~~~I~aIgis~~ 144 (333)
||||.|+|++|++|+|.+|+++.+....... ....+.+...+.+.++++++..+ ...+|..+.++..
T Consensus 1 lGIDgGgTkt~~vl~d~~g~il~~~~~~~~n----~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~~~g~a 70 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDENGNILGRGKGGGAN----YNSVGFEEAMENIKEAIEEALSQAGLSPDDIAAICIGAA 70 (271)
T ss_dssp EEEEECSSEEEEEEEETTSEEEEEEEES-TT----HHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCEEEEEEE
T ss_pred CEEeeChheeeeEEEeCCCCEEEEEEeCCCC----CCCCCcchhhhHHHHHHHHHHHHcCCCccccceeeeeEe
Confidence 7999999999999999999988766532211 12234455555555555554433 3445766644443
No 42
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=96.93 E-value=0.0049 Score=57.59 Aligned_cols=71 Identities=17% Similarity=0.134 Sum_probs=41.2
Q ss_pred eEEEEEeCccCceEEEEeCCCcE-EEEEEEeecCcCCccccccH-HHHHHHHHHHHHhchhcCCCCccEEEEecCCceE
Q 037497 72 LYLGMDFGTSGARFAIINKDGTI-LSEGKKEYPKFTTEESIDWL-RSWKVTLFSLLEAVPVNLRPLIASISIDGTSATT 148 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~~G~i-l~~~~~~~~~~~pg~~e~d~-~~~~~~i~~~l~~l~~~~~~~I~aIgis~~~~s~ 148 (333)
+++|||+|+|++|++|+|.+++. .......+++. ..++ +...+.+.++++++.. ...+|..|+.++.|..+
T Consensus 2 ~~~GIDiGStttK~Vlid~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~-~~~~i~~i~~TGYGR~~ 74 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLFEVDGDKEECLAKRNDRIR-----QRDPFKLAEDAYDDLLEEAGL-AAADVAYCATTGEGESL 74 (262)
T ss_pred eEEEEEcCcccEEEEEEecCCCeeEEEEEEEecCC-----CCCHHHHHHHHHHHHHHHcCC-ChhheEEEEEECCchhh
Confidence 68999999999999999975542 22223333321 1222 2233344444444432 23567788887776554
No 43
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=96.93 E-value=0.0032 Score=61.05 Aligned_cols=71 Identities=15% Similarity=0.108 Sum_probs=51.6
Q ss_pred CCceEEEEEeCccCceEEEEeCCCcEEEEEEEeecCcCCccccccHHHHHHHHHHHHHhchhcCCCCccEEEEecCCceE
Q 037497 69 GERLYLGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVNLRPLIASISIDGTSATT 148 (333)
Q Consensus 69 ~~~~~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~~~~s~ 148 (333)
...++||||.|+|.+|++|.++++.++......++ + .|. -.+++.+.++++.. ...+|.++|+++.|...
T Consensus 133 ~~~~~LGID~GSTtTK~VLm~d~~~I~~~~~~~t~----g----~p~-~~~~l~~~le~l~~-~~~~I~~~~~TGYGR~~ 202 (396)
T COG1924 133 QGMYTLGIDSGSTTTKAVLMEDGKEILYGFYVSTK----G----RPI-AEKALKEALEELGE-KLEEILGLGVTGYGRNL 202 (396)
T ss_pred cCcEEEEEecCCcceeEEEEeCCCeEEEEEEEcCC----C----Chh-HHHHHHHHHHHccc-ChheeeeeeeecccHHH
Confidence 44689999999999999999988866655443332 1 122 35567777777765 34689999999998665
Q ss_pred E
Q 037497 149 I 149 (333)
Q Consensus 149 v 149 (333)
+
T Consensus 203 v 203 (396)
T COG1924 203 V 203 (396)
T ss_pred h
Confidence 5
No 44
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=96.60 E-value=0.0032 Score=61.73 Aligned_cols=33 Identities=15% Similarity=0.562 Sum_probs=29.2
Q ss_pred ceEEEEEeCccCceEEEEeCCCcEEEEEEEeec
Q 037497 71 RLYLGMDFGTSGARFAIINKDGTILSEGKKEYP 103 (333)
Q Consensus 71 ~~~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~ 103 (333)
+|++|||+|+|++|++|+|.+++++.....++.
T Consensus 2 ~y~lGIDIGSTsTKaVVmd~~g~Il~~~i~pTG 34 (432)
T TIGR02259 2 ECFVGIDLGSTTTKAVLMDDKGEVIGRGITNSR 34 (432)
T ss_pred ceEEEEEcCchhEEEEEEcCCCcEEEEEecCCC
Confidence 699999999999999999998889887766663
No 45
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=96.59 E-value=0.0064 Score=53.53 Aligned_cols=73 Identities=19% Similarity=0.212 Sum_probs=46.7
Q ss_pred EEEEeCccCceEEEEeCCCcEEEEEEEeecCcCCccccccHHHHHHHHHHHHHhchhcCCCCccEEEEecCCceEEEEeC
Q 037497 74 LGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVNLRPLIASISIDGTSATTIIIDS 153 (333)
Q Consensus 74 lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~~~~s~v~vD~ 153 (333)
||||+|+|.+-++++|.++.+++..+.++. .+.-.+.+.+++.+++.+... +..+|..|-+++...+=.++..
T Consensus 2 igIDvGGT~TD~v~~d~~~~~~~~~K~~Tt------~~d~~~gi~~al~~l~~~~~~-~~~~i~~v~~gTT~~tNAl~e~ 74 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDEDTGVVATAKVPTT------PDDPAEGILEALDALLEESGI-DPSDIDRVRHGTTVATNALLER 74 (176)
T ss_pred eeEecCCCcEEEEEEeCCCCEEEEEEeCCC------CcCHHHHHHHHHHhhhcccCC-ChhhCcEEEeccHHHHHHHHhc
Confidence 799999999999999998778887776663 112223345555555444322 3567888877776433333333
No 46
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=96.50 E-value=0.0053 Score=58.78 Aligned_cols=77 Identities=22% Similarity=0.200 Sum_probs=43.7
Q ss_pred EEEEeCccCceEEEEeCCCcEEEEEEEeecCcCCccccccHHHHHHHHHHHHHhchhcCCCCc--cEEEEecCCceEEEE
Q 037497 74 LGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVNLRPLI--ASISIDGTSATTIII 151 (333)
Q Consensus 74 lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~~~~~~I--~aIgis~~~~s~v~v 151 (333)
|.+|||+|++|.+|+|++|.++..... ++ . .+.+.+.+.+.+.+++........+ .+||+.++ +
T Consensus 1 l~~DIGGT~i~~glvd~~g~~l~~~~~-~~----~---~~~~~l~~~i~~~l~~~~~~~~~~~~~~~Igi~Gp------v 66 (316)
T TIGR00749 1 LVGDIGGTNARLALCEIAPGEISQAKT-YS----G---LDFPSLEAVVRVYLEEHKVELKDPIAKGCFAIACP------I 66 (316)
T ss_pred CeEecCcceeeEEEEecCCCceeeeEE-Ee----c---CCCCCHHHHHHHHHHhcccccCCCcCeEEEEEeCc------c
Confidence 579999999999999998876654321 11 1 2234556666666655421111123 56666644 3
Q ss_pred eCCCCccccCCcccC
Q 037497 152 DSNSGEPLWRPFLYN 166 (333)
Q Consensus 152 D~~~G~pl~p~i~W~ 166 (333)
+ .+....+++.|.
T Consensus 67 ~--~~~v~~~nl~w~ 79 (316)
T TIGR00749 67 T--GDWVAMTNHTWA 79 (316)
T ss_pred c--CCEEEecCCCCe
Confidence 2 343334455683
No 47
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=96.10 E-value=0.015 Score=57.83 Aligned_cols=73 Identities=19% Similarity=0.234 Sum_probs=45.1
Q ss_pred eEEEEEeCccCceEEEEeC-CCcEEEEEEEeecCcCCcc--------cc--ccHHH----HHHHHHHHHHhchhc---CC
Q 037497 72 LYLGMDFGTSGARFAIINK-DGTILSEGKKEYPKFTTEE--------SI--DWLRS----WKVTLFSLLEAVPVN---LR 133 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~-~G~il~~~~~~~~~~~pg~--------~e--~d~~~----~~~~i~~~l~~l~~~---~~ 133 (333)
|-++||||||.+.+.++|. +|++++..+...|+..-|. +. ...++ +.+.+.++++++..+ .+
T Consensus 2 ~GiAvDiGTTti~~~L~dl~~G~~l~~~s~~NpQ~~~GaDViSRI~~a~~~~~~~~L~~~i~~~i~~li~~l~~~~gi~~ 81 (412)
T PF14574_consen 2 YGIAVDIGTTTIAAYLVDLETGEVLATASFLNPQRAYGADVISRISYALSPEGLEELQRLIRETINELIEELLEKAGISP 81 (412)
T ss_dssp EEEEEEE-SSEEEEEEEETTT--EEEEEEEE-GGGGT-SSHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHT--G
T ss_pred EEEEEEcchhheeeEEEECCCCCEEEeecccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 6799999999999999995 7999999998888663221 11 11233 344455555555432 35
Q ss_pred CCccEEEEecC
Q 037497 134 PLIASISIDGT 144 (333)
Q Consensus 134 ~~I~aIgis~~ 144 (333)
++|..|.|++.
T Consensus 82 ~~I~~i~i~GN 92 (412)
T PF14574_consen 82 EDIYEIVIVGN 92 (412)
T ss_dssp GGEEEEEEEE-
T ss_pred HHeEEEEEEec
Confidence 67888887654
No 48
>PTZ00288 glucokinase 1; Provisional
Probab=96.05 E-value=0.048 Score=54.16 Aligned_cols=71 Identities=18% Similarity=0.262 Sum_probs=44.2
Q ss_pred CCceEEEEEeCccCceEEEEeC---CCcEEEEEEEeecCcCCccccccHHHHHHHHHHHHHhchhcCC--CCc--cEEEE
Q 037497 69 GERLYLGMDFGTSGARFAIINK---DGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVNLR--PLI--ASISI 141 (333)
Q Consensus 69 ~~~~~lGIDiGTTsiKa~l~D~---~G~il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~~~~--~~I--~aIgi 141 (333)
.-.|++|+|||+|++|.++++. ++..+...+..++. ...+..+..+.+.++++++.+..+ +.+ .+|+|
T Consensus 24 ~~~~~~~~DiGgt~~R~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~iAv 98 (405)
T PTZ00288 24 SGPIFVGCDVGGTNARVGFAREVQHDDSGVHIIYVRFNV-----TKTDIRELLEFFDEVLQKLKKNLSFIQRVAAGAISV 98 (405)
T ss_pred cCCeEEEEEecCCceEEEEEeccCCCCCceeEEEEeccc-----ccccHHHHHHHHHHHHHHHHhcCccccCcCeEEEEE
Confidence 4469999999999999999986 23344444444441 135566667776666666655321 333 35555
Q ss_pred ecC
Q 037497 142 DGT 144 (333)
Q Consensus 142 s~~ 144 (333)
.++
T Consensus 99 AGP 101 (405)
T PTZ00288 99 PGP 101 (405)
T ss_pred eCc
Confidence 544
No 49
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=96.03 E-value=0.041 Score=48.54 Aligned_cols=80 Identities=15% Similarity=0.162 Sum_probs=52.4
Q ss_pred EEEEEeCccCceEEEEeC--CC--cEEEEEEEeecCcCCccccccHHHHHHHHHHHHHhchhcCCCCccEEEEecCCceE
Q 037497 73 YLGMDFGTSGARFAIINK--DG--TILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVNLRPLIASISIDGTSATT 148 (333)
Q Consensus 73 ~lGIDiGTTsiKa~l~D~--~G--~il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~~~~s~ 148 (333)
++||||||+++|+++... +| +++.....+..-. ....-.|.+...++++++++++-.....+|..+.++-.+..+
T Consensus 1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g~~~~~s~gi-~~G~I~d~~~~~~~I~~ai~~ae~~~~~~i~~V~v~i~g~~v 79 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVDEDGEINVIGVGEVPSRGI-RKGVIVDIEAAARAIREAVEEAERMAGVKIDSVYVGISGRHL 79 (187)
T ss_pred CEEEEeccceEEEEEEEEcCCCCEEEEEEEEecCCCc-cCcEEECHHHHHHHHHHHHHHHHHHhCCcccEEEEEEcCCce
Confidence 479999999999999863 44 5555554432211 122457888999999999998854334456666666665555
Q ss_pred EEEeC
Q 037497 149 IIIDS 153 (333)
Q Consensus 149 v~vD~ 153 (333)
.....
T Consensus 80 ~~~~~ 84 (187)
T smart00842 80 KSVNV 84 (187)
T ss_pred EEEee
Confidence 54443
No 50
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=95.95 E-value=0.034 Score=50.23 Aligned_cols=69 Identities=13% Similarity=0.130 Sum_probs=44.1
Q ss_pred eEEEEEeCccCceEEEEeCCCc-EEEEEEEeecCcCCc-cccccHHHHHHHHHHHHHhchhc----CCCCccEEEEe
Q 037497 72 LYLGMDFGTSGARFAIINKDGT-ILSEGKKEYPKFTTE-ESIDWLRSWKVTLFSLLEAVPVN----LRPLIASISID 142 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~~G~-il~~~~~~~~~~~pg-~~e~d~~~~~~~i~~~l~~l~~~----~~~~I~aIgis 142 (333)
.||+||+|+|+.|++++...|+ .+...+..+++ |+ ......+++++.|.+++.++... ...+..-+|++
T Consensus 64 ~~LalDlGGTnlRv~~V~L~g~~~~~~~~~~~~i--p~~~~~~~~~~lFd~ia~~i~~f~~~~~~~~~~~~l~lGfT 138 (206)
T PF00349_consen 64 DFLALDLGGTNLRVALVELSGNGKVEIEQEKYKI--PEELMNGSGEELFDFIADCIAEFLKEHNLESRDEKLPLGFT 138 (206)
T ss_dssp EEEEEEESSSSEEEEEEEEESSSEEEEEEEEEE----HHHHTSBHHHHHHHHHHHHHHHHHHTTTTSTTSEEEEEEE
T ss_pred eEEEEeecCcEEEEEEEEEcCCCCceeeeccccC--ChHHhcCCcccHHHHHHHHHHHHHHHhcccccccccceEEE
Confidence 6899999999999999997664 33333344432 32 23344588888888888877653 12344445554
No 51
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=95.75 E-value=0.052 Score=50.82 Aligned_cols=71 Identities=14% Similarity=0.146 Sum_probs=46.3
Q ss_pred CceEEEEEeCccCceEEEEeCCCcEEEEEEEeecCcCCccccccHHHHHHHHHHHHHhchhcCCCCccEEEE
Q 037497 70 ERLYLGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVNLRPLIASISI 141 (333)
Q Consensus 70 ~~~~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgi 141 (333)
.++++||||||+++|+++++.+++.+.....+-.....| .-.|.+.....++++++.+......+|..+.+
T Consensus 23 ~~~~~~iDiGSssi~~vv~~~~~~~~~~~~~~~~~vr~G-~i~di~~a~~~i~~~~~~ae~~~g~~i~~v~~ 93 (267)
T PRK15080 23 SPLKVGVDLGTANIVLAVLDEDGQPVAGALEWADVVRDG-IVVDFIGAVTIVRRLKATLEEKLGRELTHAAT 93 (267)
T ss_pred CCEEEEEEccCceEEEEEEcCCCCEEEEEeccccccCCC-EEeeHHHHHHHHHHHHHHHHHHhCCCcCeEEE
Confidence 468999999999999999988887666554433322223 35667777777777766543322334555554
No 52
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=95.51 E-value=0.09 Score=52.44 Aligned_cols=78 Identities=15% Similarity=0.204 Sum_probs=50.9
Q ss_pred CceEEEEEeCccCceEEEEe--CCC--cEEEEEEEeecCcCCccccccHHHHHHHHHHHHHhchhcCCCCccEEEEecCC
Q 037497 70 ERLYLGMDFGTSGARFAIIN--KDG--TILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVNLRPLIASISIDGTS 145 (333)
Q Consensus 70 ~~~~lGIDiGTTsiKa~l~D--~~G--~il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~~~ 145 (333)
.++++||||||+++|+++.. .+| +++.....+..-.. ...-.|.+...++++++++++......+|..+-++-.+
T Consensus 7 ~~~i~~lDIGsskv~~vv~~~~~~~~~~i~g~~~~~s~gi~-~G~I~d~~~~~~aI~~av~~ae~~~g~~i~~v~v~i~g 85 (420)
T PRK09472 7 RKLVVGLEIGTAKVAALVGEVLPDGMVNIIGVGSCPSRGMD-KGGVNDLESVVKCVQRAIDQAELMADCQISSVYLALSG 85 (420)
T ss_pred CCEEEEEEcccceEEEEEEEEcCCCCEEEEEEEEccCCCcc-CCEEEcHHHHHHHHHHHHHHHHHHhCCcccEEEEEecC
Confidence 35899999999999999776 355 45555554422111 22457889999999999988754333456555555444
Q ss_pred ceE
Q 037497 146 ATT 148 (333)
Q Consensus 146 ~s~ 148 (333)
..+
T Consensus 86 ~~v 88 (420)
T PRK09472 86 KHI 88 (420)
T ss_pred cce
Confidence 433
No 53
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=95.39 E-value=0.088 Score=51.44 Aligned_cols=79 Identities=19% Similarity=0.192 Sum_probs=50.4
Q ss_pred EEEEEeCccCceEEEEeC--CC--cEEEEEEEeecCcCCccccccHHHHHHHHHHHHHhchhcCCCCccEEEEecCCceE
Q 037497 73 YLGMDFGTSGARFAIINK--DG--TILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVNLRPLIASISIDGTSATT 148 (333)
Q Consensus 73 ~lGIDiGTTsiKa~l~D~--~G--~il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~~~~s~ 148 (333)
++||||||+++|+++... ++ ++++....|..-.. ...-.|.+...++++++++++-.....++..+.++-.+..+
T Consensus 2 ~~~lDIGs~~ik~vv~~~~~~~~~~i~~~~~~~~~gi~-~G~I~d~~~~~~~i~~al~~~e~~~~~~i~~v~~~v~g~~v 80 (371)
T TIGR01174 2 IVGLDIGTSKICAIVAEVLEDGELNIIGVGTHPSRGIK-KGVINDIEAAVGSIQRAIEAAELMAGCEIRSVIVSISGAHI 80 (371)
T ss_pred EEEEEeccceEEEEEEEEcCCCCEEEEEEEEecCCCcc-CcEEEcHHHHHHHHHHHHHHHHHHhCCcccEEEEEEcccce
Confidence 689999999999999763 34 45555544433111 22457888889999999988744333455555555444455
Q ss_pred EEEe
Q 037497 149 IIID 152 (333)
Q Consensus 149 v~vD 152 (333)
...+
T Consensus 81 ~~~~ 84 (371)
T TIGR01174 81 KSQN 84 (371)
T ss_pred EEEe
Confidence 4443
No 54
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=94.45 E-value=0.078 Score=51.00 Aligned_cols=62 Identities=19% Similarity=0.288 Sum_probs=42.2
Q ss_pred EEEEeCccCceEEEEeCCCcEEEEEEEeecCcCCccccccHHHHHHHHHHHHHhchhcCCCCccEEEEecC
Q 037497 74 LGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVNLRPLIASISIDGT 144 (333)
Q Consensus 74 lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~~ 144 (333)
||+|||+-++|++++|.+|++......+.|+. ++.+.+-+++.++++++.. .+..+|-+++-
T Consensus 1 ~G~DiGGA~~K~a~~~~~g~~~~v~~~~~plW------~~~~~L~~~l~~~~~~~~~---~~~~avtMTgE 62 (318)
T TIGR03123 1 LGIDIGGANTKAAELDEDGRIKEVHQLYCPLW------KGNDKLAETLKEISQDLSS---ADNVAVTMTGE 62 (318)
T ss_pred CccccccceeeeEEecCCCceeEEEEecCccc------CCchHHHHHHHHHHHhcCc---cceEEEEeehh
Confidence 68999999999999999998887666666643 4445565666666655421 23445555544
No 55
>PRK13324 pantothenate kinase; Reviewed
Probab=93.64 E-value=0.36 Score=45.07 Aligned_cols=65 Identities=20% Similarity=0.122 Sum_probs=44.1
Q ss_pred EEEEEeCccCceEEEEeCCCcEEEEEEEeecCcCCccccccHHHHHHHHHHHHHhchhcCCCCccEEEEecC
Q 037497 73 YLGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVNLRPLIASISIDGT 144 (333)
Q Consensus 73 ~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~~ 144 (333)
+|.||+|-|++|.+++|. ++++...+.++. ......+++...+...+++... +..+|.+|.+++-
T Consensus 2 iL~iDiGNT~ik~gl~~~-~~~~~~~r~~t~-----~~~~t~de~~~~l~~~~~~~~~-~~~~i~~viisSV 66 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDG-DRIVSQIRYATS-----SVDSTSDQMGVFLRQALRENSV-DLGKIDGCGISSV 66 (258)
T ss_pred EEEEEeCCCceEEEEEEC-CEEEEEEEEecC-----ccccchHHHHHHHHHHHHhcCC-CccCCCeEEEEeC
Confidence 689999999999999994 456554444331 1234456777777777766543 3456888888864
No 56
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=93.53 E-value=0.21 Score=46.01 Aligned_cols=69 Identities=12% Similarity=0.097 Sum_probs=41.2
Q ss_pred EEEeCccCceEEEEeCCCcEEEEEEEeecCcCCccccccHHHHHHHHHHHHHhchhcCCCCccEEEEecC
Q 037497 75 GMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVNLRPLIASISIDGT 144 (333)
Q Consensus 75 GIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~~ 144 (333)
||||||+++|+++.+.+++.++....+-.... +..-.|.+.....+..+.+.+......++..+-++.+
T Consensus 1 g~dig~~~ik~v~~~~~~~~~~~~~~~~~~~~-~g~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP 69 (239)
T TIGR02529 1 GVDLGTANIVIVVLDEDGQPVAGVMQFADVVR-DGIVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIP 69 (239)
T ss_pred CCCcccceEEEEEEecCCCEEEEEeccccccc-CCeEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEEC
Confidence 79999999999999988876555433332111 2245777776666666665442212233444445444
No 57
>PRK13317 pantothenate kinase; Provisional
Probab=93.30 E-value=0.1 Score=49.31 Aligned_cols=27 Identities=11% Similarity=0.257 Sum_probs=23.6
Q ss_pred ceEEEEEeCccCceEEEEeCCCcEEEE
Q 037497 71 RLYLGMDFGTSGARFAIINKDGTILSE 97 (333)
Q Consensus 71 ~~~lGIDiGTTsiKa~l~D~~G~il~~ 97 (333)
.+.+|||+|+|.+|.+++|++++++..
T Consensus 2 ~~~iGIDiGstt~K~v~~~~~~~~~~~ 28 (277)
T PRK13317 2 EMKIGIDAGGTLTKIVYLEEKKQRTFK 28 (277)
T ss_pred CceEEEEeCcccEEEEEEcCCCeEEEE
Confidence 478999999999999999998877644
No 58
>PLN02914 hexokinase
Probab=93.30 E-value=0.3 Score=49.66 Aligned_cols=59 Identities=14% Similarity=0.119 Sum_probs=41.5
Q ss_pred eEEEEEeCccCceEEEEeCCCc---EEEEEEEeecCcCCccccccHHHHHHHHHHHHHhchhc
Q 037497 72 LYLGMDFGTSGARFAIINKDGT---ILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVN 131 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~~G~---il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~~ 131 (333)
.|++||+|+||.|+++++..|+ ++...+..++.. +....-..+++++.|.+++.++...
T Consensus 96 ~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~ip-~~l~~gt~~eLFdfIA~~i~~fl~~ 157 (490)
T PLN02914 96 LFYALDLGGTNFRVLRVQLGGKDERVIATEFEQVSIP-QELMFGTSEELFDFIASGLANFVAK 157 (490)
T ss_pred EEEEEecCCceEEEEEEEecCCCCceeeeeEEEecCC-hhhccCCHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999997663 444444444331 1223445688999888888887653
No 59
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=93.20 E-value=0.24 Score=48.34 Aligned_cols=66 Identities=9% Similarity=0.200 Sum_probs=38.9
Q ss_pred EEEEEeCccCceEEEEeCCCcEEEEEEEeecCcCCccccccHHHHH---HHHHHHHHhchhcCCCCccEEE
Q 037497 73 YLGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRSWK---VTLFSLLEAVPVNLRPLIASIS 140 (333)
Q Consensus 73 ~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~pg~~e~d~~~~~---~~i~~~l~~l~~~~~~~I~aIg 140 (333)
+|.|..|+||+|++|||.++.++.+...... ...+..+...+++. +.+.+.+++... ...+|.+|+
T Consensus 2 il~in~Gsts~k~alf~~~~~~~~~~~~~~~-~~~~~~~~~~~q~~~r~~~i~~~l~~~~~-~~~~i~av~ 70 (351)
T TIGR02707 2 ILVINPGSTSTKLAVFEDERPLFEETLRHSV-EELGRFKNVIDQFEFRKQVILQFLEEHGI-SISKLDAVV 70 (351)
T ss_pred EEEEecCchhheEEEEeCCCceeeeeecCCH-HHhcccccHHHHHHHHHHHHHHHHHHcCC-CcccccEEE
Confidence 6899999999999999999988765433321 10111222233444 344444444221 245688883
No 60
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=92.78 E-value=0.47 Score=44.87 Aligned_cols=72 Identities=15% Similarity=0.220 Sum_probs=47.0
Q ss_pred CceEEEEEeCccCceEEEEeCCCcEEEEEEEeecCcCCccccccHHHHHHHHHHHHHhchhc---CCCC-ccEEEEecCC
Q 037497 70 ERLYLGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVN---LRPL-IASISIDGTS 145 (333)
Q Consensus 70 ~~~~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~~---~~~~-I~aIgis~~~ 145 (333)
+.+|.||+=|.|..|.+++|++++++.++....... .-.+.+...+.|.+.++++..+ +.+. ++++|++--+
T Consensus 2 ~~~y~GvEGgaT~s~~Vivd~~~~~~~~a~~~~Tnh----~~ig~~~~~~rie~~i~~A~~k~g~d~~~~lr~lgL~lSg 77 (336)
T KOG1794|consen 2 KDFYGGVEGGATCSRLVIVDEDGTILGRAVGGGTNH----WLIGSTTCASRIEDMIREAKEKAGWDKKGPLRSLGLGLSG 77 (336)
T ss_pred CceeEeecCCcceeEEEEECCCCCEeeEeecccccc----ccCCchHHHHHHHHHHHHHHhhcCCCccCccceeeeeccc
Confidence 468999999999999999999999998876443322 1122334444555555544332 3333 7788776554
No 61
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=92.34 E-value=0.52 Score=45.51 Aligned_cols=69 Identities=20% Similarity=0.266 Sum_probs=42.6
Q ss_pred EEEeCccCceEEEEeCCCc---EEEEEEEeecCcC-CccccccHHHHHHHHHHHHHhchhcCCCCccEEEEecCC
Q 037497 75 GMDFGTSGARFAIINKDGT---ILSEGKKEYPKFT-TEESIDWLRSWKVTLFSLLEAVPVNLRPLIASISIDGTS 145 (333)
Q Consensus 75 GIDiGTTsiKa~l~D~~G~---il~~~~~~~~~~~-pg~~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~~~ 145 (333)
|||||+.++|++-+...++ +......++|... .+....|++.+.+.+++++++... ..+-..+++.+..
T Consensus 1 GiDiG~~siK~v~l~~~~~~~~l~~~~~~~~p~~~i~~g~i~d~~~l~~~L~~~~~~~~~--~~k~v~~aip~~~ 73 (340)
T PF11104_consen 1 GIDIGSSSIKAVELSKKGNRFQLEAFASIPLPPGAISDGEIVDPEALAEALKELLKENKI--KGKKVVLAIPGSS 73 (340)
T ss_dssp EEEE-SSEEEEEEEETTTT--EEEEEEEEE--TTSEETTEES-HHHHHHHHHHHHHHHT------EEEEEE-GGG
T ss_pred CeecCCCeEEEEEEEEcCCccEEEEEEEEECCCCCccCCCcCCHHHHHHHHHHHHHHcCC--CCCeEEEEeCCCc
Confidence 8999999999999997653 4455666666321 122347888999999999988754 2344556666543
No 62
>PLN02596 hexokinase-like
Probab=92.32 E-value=0.35 Score=49.26 Aligned_cols=58 Identities=14% Similarity=0.011 Sum_probs=39.3
Q ss_pred eEEEEEeCccCceEEEEeCCCc---EEEEEEEeecCcCCccccccHHHHHHHHHHHHHhchh
Q 037497 72 LYLGMDFGTSGARFAIINKDGT---ILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPV 130 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~~G~---il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~ 130 (333)
.||+||+|+||.|+++++..|+ +....+..++.. +....-..+++++.|.+++.++..
T Consensus 97 ~yLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~Ip-~~l~~~t~~eLFd~IA~~i~~fl~ 157 (490)
T PLN02596 97 LYYGLNLRGSNFLLLRARLGGKNEPISDLYREEISIP-SNVLNGTSQELFDYIALELAKFVA 157 (490)
T ss_pred EEEEEeeCCceEEEEEEEEcCCCCceEEEEEEEecCC-hHhhcCCHHHHHHHHHHHHHHHHH
Confidence 5799999999999999998764 233333333321 122334567888888888877764
No 63
>PLN02405 hexokinase
Probab=92.02 E-value=0.44 Score=48.61 Aligned_cols=58 Identities=12% Similarity=0.091 Sum_probs=40.7
Q ss_pred eEEEEEeCccCceEEEEeCCCc---EEEEEEEeecCcCCccccccHHHHHHHHHHHHHhchh
Q 037497 72 LYLGMDFGTSGARFAIINKDGT---ILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPV 130 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~~G~---il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~ 130 (333)
.|++||+|+||.|++++...|+ .+...+..++.. +....-..+++++.|.+++.+...
T Consensus 96 ~flAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~ip-~~~~~gt~~~LFdfIA~~i~~fl~ 156 (497)
T PLN02405 96 LFYALDLGGTNFRVLRVLLGGKDGRVVKQEFEEVSIP-PHLMTGSSDALFDFIAAALAKFVA 156 (497)
T ss_pred eEEEEecCCceEEEEEEEEcCCCCceeEEEEEEeecC-hhhccCCHHHHHHHHHHHHHHHHH
Confidence 6899999999999999998762 444444444431 122345567888888888887664
No 64
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=91.84 E-value=1.4 Score=42.45 Aligned_cols=72 Identities=21% Similarity=0.319 Sum_probs=46.1
Q ss_pred ceEEEEEeCccCceEEEEeCCC---cEEEEEEEeecCcC-CccccccHHHHHHHHHHHHHhchhcCCCCccEEEEecC
Q 037497 71 RLYLGMDFGTSGARFAIINKDG---TILSEGKKEYPKFT-TEESIDWLRSWKVTLFSLLEAVPVNLRPLIASISIDGT 144 (333)
Q Consensus 71 ~~~lGIDiGTTsiKa~l~D~~G---~il~~~~~~~~~~~-pg~~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~~ 144 (333)
..++|||||++++|++.+...+ +++.....+.|... .+....|.+.+.+++.+++++... ..+-..+++.+.
T Consensus 3 ~~~vgiDIg~~~Ik~v~~~~~~~~~~v~~~~~~~~p~~~i~~g~i~d~~~~~~~l~~~~~~~~~--~~k~v~~alp~~ 78 (348)
T TIGR01175 3 SLLVGIDIGSTSVKVAQLKRSGDRYKLEHYAVEPLPAGIFTEGHIVEYQAVAEALKELLSELGI--NTKKAATAVPGS 78 (348)
T ss_pred CcEEEEEeccCeEEEEEEEecCCceEEEEEEEEECCCCcccCCCccCHHHHHHHHHHHHHHcCC--CcceEEEEecCC
Confidence 3689999999999999998533 34444455554211 122356788888888888887643 122245555554
No 65
>PRK13320 pantothenate kinase; Reviewed
Probab=91.81 E-value=0.79 Score=42.41 Aligned_cols=55 Identities=18% Similarity=0.257 Sum_probs=35.4
Q ss_pred eEEEEEeCccCceEEEEeCCCcEEEEEEEeecCcCCccccccHHHHHHHHHHHHHhchhcCCCCccEEEEecC
Q 037497 72 LYLGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVNLRPLIASISIDGT 144 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~~ 144 (333)
++|.||+|.|++|.++++. ++++...+.+ .+++...+.+.+++. .+|..|.+++-
T Consensus 3 M~L~iDiGNT~ik~~~~~~-~~~~~~~~~~------------~~~~~~~l~~~~~~~-----~~i~~i~vsSV 57 (244)
T PRK13320 3 MNLVIDIGNTTTKLAVFEG-DELLEVFVVS------------TEGVEESLEKLLAKY-----PAIRDAIVSSV 57 (244)
T ss_pred eEEEEEeCCCcEEEEEEEC-CEEEEEEEEc------------cHHHHHHHHHHHHHC-----CCCCEEEEEec
Confidence 4899999999999999994 5665433221 233444444444332 25788888875
No 66
>PF13941 MutL: MutL protein
Probab=91.77 E-value=0.67 Score=46.79 Aligned_cols=31 Identities=10% Similarity=0.313 Sum_probs=26.7
Q ss_pred EEEEEeCccCceEEEEe---CCCcEEEEEEEeec
Q 037497 73 YLGMDFGTSGARFAIIN---KDGTILSEGKKEYP 103 (333)
Q Consensus 73 ~lGIDiGTTsiKa~l~D---~~G~il~~~~~~~~ 103 (333)
+|.+|+|+|.+|+.+|| .+.+++++.+.++.
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTT 35 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTT 35 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCC
Confidence 68899999999999999 46788888877665
No 67
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=91.54 E-value=0.51 Score=42.51 Aligned_cols=30 Identities=23% Similarity=0.536 Sum_probs=27.2
Q ss_pred CceEEEEEeCccCceEEEEeCCCcEEEEEE
Q 037497 70 ERLYLGMDFGTSGARFAIINKDGTILSEGK 99 (333)
Q Consensus 70 ~~~~lGIDiGTTsiKa~l~D~~G~il~~~~ 99 (333)
.++++|+|+||.++-..++|.||+.++-..
T Consensus 28 sk~~vGVDLGT~~iV~~vlD~d~~Pvag~~ 57 (277)
T COG4820 28 SKLWVGVDLGTCDIVSMVLDRDGQPVAGCL 57 (277)
T ss_pred CceEEEeecccceEEEEEEcCCCCeEEEEe
Confidence 479999999999999999999999998654
No 68
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=91.43 E-value=0.8 Score=43.29 Aligned_cols=58 Identities=12% Similarity=0.121 Sum_probs=37.8
Q ss_pred EEEEEeCccCceEEEEeCCCcEEEEEEEeecCcCCccccccHHHHHHHHHHHHHhchhcCCCCccEEEEecCC
Q 037497 73 YLGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVNLRPLIASISIDGTS 145 (333)
Q Consensus 73 ~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~~~ 145 (333)
.+|||+|+|-+|.+.+|++++++.... + .++.+++.+.+++..... ..+..|.+++-+
T Consensus 2 ~iGiDiGgT~~Kiv~~~~~~~~~f~~~---~-------~~~~~~~~~~l~~~~~~~-----~~~~~i~~TGgG 59 (279)
T TIGR00555 2 RIGIDIGGTLIKVVYEEPKGRRKFKTF---E-------TTNIDKFIEWLKNQIHRH-----SRITTLCATGGG 59 (279)
T ss_pred eEEEEeCcceEEEEEEcCCCcEEEEEe---e-------cccHHHHHHHHHHHHHhh-----cCceEEEEECCc
Confidence 489999999999999999998875432 2 133445555554433322 346667777654
No 69
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=91.43 E-value=0.89 Score=42.04 Aligned_cols=56 Identities=14% Similarity=0.089 Sum_probs=35.7
Q ss_pred EEEEeCccCceEEEEeCCCcEEEEEEEeecCcCCccccccHHHHHHHHHHHHHhchhcCCCCccEEEEec
Q 037497 74 LGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVNLRPLIASISIDG 143 (333)
Q Consensus 74 lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~ 143 (333)
|.||+|-|++|.++++. ++++...+.++. .....+++...+...+++ +|..|.+++
T Consensus 2 L~iDiGNT~i~~g~~~~-~~~~~~~r~~t~------~~~t~de~~~~l~~~~~~-------~i~~v~vsS 57 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSG-NKVYQFWRLATN------LMKTYDEHSEFLKELFGK-------SLNKAFISS 57 (243)
T ss_pred EEEEECCCcEEEEEEEC-CEEEEEEEecCC------CccChHHHHHHHHHHHHh-------hCCEEEEEE
Confidence 78999999999999994 566654444443 223455555445444433 366677765
No 70
>PLN02362 hexokinase
Probab=91.41 E-value=0.45 Score=48.66 Aligned_cols=59 Identities=19% Similarity=0.138 Sum_probs=39.6
Q ss_pred eEEEEEeCccCceEEEEeCCCc---EEEEEEEeecCcCCccccccHHHHHHHHHHHHHhchhc
Q 037497 72 LYLGMDFGTSGARFAIINKDGT---ILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVN 131 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~~G~---il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~~ 131 (333)
.|++||+|+||.|+++++..|+ .+.+....++.. +.......+++++.|.+++.++...
T Consensus 96 ~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~Ip-~~l~~~~~~eLFd~IA~~i~~fl~~ 157 (509)
T PLN02362 96 TYYALDLGGTNFRVLRVQLGGQRSSILSQDVERHPIP-QHLMNSTSEVLFDFIASSLKQFVEK 157 (509)
T ss_pred eEEEEecCCceEEEEEEEecCCCcceeeceeEEEecC-hhhccCCHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999998763 222222223321 1223445778898888888887653
No 71
>PRK13326 pantothenate kinase; Reviewed
Probab=90.73 E-value=1.1 Score=41.90 Aligned_cols=59 Identities=12% Similarity=-0.000 Sum_probs=37.2
Q ss_pred eEEEEEeCccCceEEEEeCCCcEEEEEEEeecCcCCccccccHHHHHHHHHHHHHhchhcCCCCccEEEEecC
Q 037497 72 LYLGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVNLRPLIASISIDGT 144 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~~ 144 (333)
..|.||+|-|++|.++||. ++++...+.++. .....+++...+.. .. +. +|..+.+++-
T Consensus 7 ~~L~IDiGNT~ik~glf~~-~~l~~~~r~~t~------~~~t~de~~~~l~~---~~---~~-~i~~viisSV 65 (262)
T PRK13326 7 SQLIIDIGNTSISFALYKD-NKMQIFCKLKTK------LDLSFDELYSFLKE---KF---DF-KVNQVFVSSV 65 (262)
T ss_pred EEEEEEeCCCeEEEEEEEC-CEEEEEEEeccC------CCCCHHHHHHHHhc---CC---CC-CCCEEEEEeC
Confidence 4799999999999999994 566654333332 23445565544443 11 22 5777777764
No 72
>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]
Probab=90.58 E-value=0.37 Score=45.34 Aligned_cols=33 Identities=30% Similarity=0.653 Sum_probs=28.6
Q ss_pred cCCceEEEEEeCccCceEEEEeCCCcEEEEEEE
Q 037497 68 VGERLYLGMDFGTSGARFAIINKDGTILSEGKK 100 (333)
Q Consensus 68 M~~~~~lGIDiGTTsiKa~l~D~~G~il~~~~~ 100 (333)
|+..+++.||=|||+.|+-|++.+|+++.+.+-
T Consensus 2 m~~~~~i~iDWGTT~~R~wL~~~dg~~l~~r~~ 34 (306)
T COG3734 2 MSEPAYIAIDWGTTNLRAWLVRGDGAVLAERRS 34 (306)
T ss_pred CCCceEEEEecCCccEEEEEEcCCcceeeeecc
Confidence 445689999999999999999999999987653
No 73
>PTZ00107 hexokinase; Provisional
Probab=90.57 E-value=0.57 Score=47.43 Aligned_cols=59 Identities=10% Similarity=0.148 Sum_probs=38.9
Q ss_pred eEEEEEeCccCceEEEEeCCCc-EEEEEEEeecCc--C-Cc-----cccccHHHHHHHHHHHHHhchh
Q 037497 72 LYLGMDFGTSGARFAIINKDGT-ILSEGKKEYPKF--T-TE-----ESIDWLRSWKVTLFSLLEAVPV 130 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~~G~-il~~~~~~~~~~--~-pg-----~~e~d~~~~~~~i~~~l~~l~~ 130 (333)
.||+||+|+||.|+++++..|+ .....+..+... . .+ ..+...+++++.+.+++.+...
T Consensus 75 ~fLAlDlGGTN~RV~~V~L~g~~~~~~~~~~~~ip~~~~~~~~~~~~k~~t~~~lFd~IA~~i~~fl~ 142 (464)
T PTZ00107 75 VYYAIDFGGTNFRAVRVSLRGGGKMERTQSKFSLPKSALLGEKGLLDKKATATDLFDHIAKSIKKMME 142 (464)
T ss_pred eEEEEecCCceEEEEEEEeCCCCceeeEEEEEeCCHHHhccccccccccCCHHHHHHHHHHHHHHHHH
Confidence 5899999999999999998764 332222223221 0 01 1223577889988888887765
No 74
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.26 E-value=0.72 Score=44.37 Aligned_cols=59 Identities=14% Similarity=0.220 Sum_probs=42.2
Q ss_pred eEEEEEeCccCceEEEEeCCCcEEEEE---EEeecCcC-CccccccHHHHHHHHHHHHHhchh
Q 037497 72 LYLGMDFGTSGARFAIINKDGTILSEG---KKEYPKFT-TEESIDWLRSWKVTLFSLLEAVPV 130 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~~G~il~~~---~~~~~~~~-pg~~e~d~~~~~~~i~~~l~~l~~ 130 (333)
..+|||||++++|++-....|+...-. ..+.|... .+....|++.+.+.+++++.++..
T Consensus 11 ~~vGIdI~~~sVKvvqLs~~g~~~kLe~y~~~~lp~~iv~dg~ivd~~av~~~Lk~ala~~gi 73 (354)
T COG4972 11 AAVGIDIGSHSVKVVQLSRSGNRYKLEKYASEPLPENIVADGKIVDYDAVASALKRALAKLGI 73 (354)
T ss_pred ceeeEeeccceEEEEEEcccCCceeeeeeeecccCccccccCCcccHHHHHHHHHHHHHhcCc
Confidence 589999999999999999777544333 33333211 133458889999999998888765
No 75
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=88.86 E-value=1 Score=43.27 Aligned_cols=77 Identities=21% Similarity=0.271 Sum_probs=40.1
Q ss_pred EEEEeCccCceEEEEeCCCcE---EEEEEEeecCcCCccccccHHHHHHHHHHHHHhchhcCCCCccEEEEecCCceEEE
Q 037497 74 LGMDFGTSGARFAIINKDGTI---LSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVNLRPLIASISIDGTSATTII 150 (333)
Q Consensus 74 lGIDiGTTsiKa~l~D~~G~i---l~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~~~~s~v~ 150 (333)
|+-|||+|++|.++++.++.. +... .|+. .+...+.+.+.+.++++.. ...++.+..++..| |
T Consensus 1 Lv~DIGGTn~Rlal~~~~~~~~~~~~~~--~~~~-------~~~~s~~~~l~~~l~~~~~-~~~~p~~~~iavAG----P 66 (316)
T PF02685_consen 1 LVADIGGTNTRLALAEPDGGPLQLIDIR--RYPS-------ADFPSFEDALADYLAELDA-GGPEPDSACIAVAG----P 66 (316)
T ss_dssp EEEEEETTEEEEEEEECTCGG-EEEEEE--EEEG-------CCCCHHHHHHHHHHHHTCH-HHTCEEEEEEEESS-----
T ss_pred CeEEeCcccEEEEEEEcCCCCccccccE--EEec-------CCcCCHHHHHHHHHHhccc-CCCccceEEEEEec----C
Confidence 467999999999999987644 3332 3321 2222344445555554321 11234444444444 6
Q ss_pred EeCCCCccccCCcccC
Q 037497 151 IDSNSGEPLWRPFLYN 166 (333)
Q Consensus 151 vD~~~G~pl~p~i~W~ 166 (333)
|+. ++....++.|.
T Consensus 67 V~~--~~~~lTN~~W~ 80 (316)
T PF02685_consen 67 VRD--GKVRLTNLPWT 80 (316)
T ss_dssp EET--TCEE-SSSCCE
T ss_pred ccC--CEEEecCCCcc
Confidence 664 34433445573
No 76
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=87.33 E-value=3.6 Score=41.15 Aligned_cols=75 Identities=21% Similarity=0.201 Sum_probs=46.9
Q ss_pred eEEEEEeCccCceEEEEeC--CCc--EEEEEEEeecCcCCccccccHHHHHHHHHHHHHhchhcCCCCccEEEEecCCce
Q 037497 72 LYLGMDFGTSGARFAIINK--DGT--ILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVNLRPLIASISIDGTSAT 147 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~--~G~--il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~~~~s 147 (333)
++.|+||||+.+++.+--. +|+ ++...+.+..-. ....-.|.+....+++++++++-....-+|..+.++-.+..
T Consensus 7 ~iv~LDIGTskV~~lVge~~~~g~i~iig~g~~~SrGi-k~G~I~di~~~~~sI~~av~~AE~mag~~i~~v~vs~sG~~ 85 (418)
T COG0849 7 LIVGLDIGTSKVKALVGELRPDGRLNIIGVGSHPSRGI-KKGVIVDLDAAAQSIKKAVEAAERMAGCEIKSVIVSLSGNH 85 (418)
T ss_pred eEEEEEccCcEEEEEEEEEcCCCeEEEEeeecccCccc-ccceEEcHHHHHHHHHHHHHHHHHhcCCCcceEEEEeccce
Confidence 8999999999999998763 342 222222211100 01245788888888888888775433456776666655533
No 77
>PRK13331 pantothenate kinase; Reviewed
Probab=86.69 E-value=2.9 Score=38.98 Aligned_cols=58 Identities=16% Similarity=0.173 Sum_probs=35.6
Q ss_pred eEEEEEeCccCceEEEEeCCCcEEEEEEEeecCcCCccccccHHHHHHHHHHHHHhchhcCCCCccEEEEecC
Q 037497 72 LYLGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVNLRPLIASISIDGT 144 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~~ 144 (333)
.+|.||+|-|+++.++||. .+++...+ +.. ....| +..+++.... ...+|.++.+++-
T Consensus 8 ~~L~iDiGNT~~~~g~f~~-~~~~~~~r--t~~----~~t~d-------~~~~l~~~~~-~~~~i~~~iisSV 65 (251)
T PRK13331 8 EWLALMIGNSRLHWGYFSG-ETLVKTWD--TPH----LDESI-------IQLLLPGQTL-LIVAPNPLVIASV 65 (251)
T ss_pred cEEEEEeCCCcEEEEEEEC-CEEEEEEE--cCC----cchHH-------HHHHHHHcCC-CccccCEEEEEec
Confidence 5799999999999999994 35554322 221 12222 4455544322 3456888888774
No 78
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=86.65 E-value=2.4 Score=44.91 Aligned_cols=32 Identities=25% Similarity=0.384 Sum_probs=26.6
Q ss_pred ceEEEEEeCccCceEEEEeCCCcEEEEEEEee
Q 037497 71 RLYLGMDFGTSGARFAIINKDGTILSEGKKEY 102 (333)
Q Consensus 71 ~~~lGIDiGTTsiKa~l~D~~G~il~~~~~~~ 102 (333)
.+.+|||+|+|.+-++++|.++.++...+..+
T Consensus 2 ~~~iGID~GGTfTDaV~~~~~~g~~~~~K~lT 33 (674)
T COG0145 2 MLRIGIDVGGTFTDAVLLDEDGGVLATIKVLT 33 (674)
T ss_pred ceEEEEEcCCCcEeEEEEeCCCCEEEEEEccC
Confidence 47899999999999999999876776666544
No 79
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=86.14 E-value=2.3 Score=39.61 Aligned_cols=62 Identities=18% Similarity=0.210 Sum_probs=41.6
Q ss_pred EEEEEeCccCceEEEEeCCCcEEEEEEEeecCcCCccccccHHHHHHHHHHHHHhchhcCCCCccEEEEecC
Q 037497 73 YLGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVNLRPLIASISIDGT 144 (333)
Q Consensus 73 ~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~~ 144 (333)
+|.||+|.|+++.++++ ++++....+..+. .+...+++-..+.+.+... ...+|.+|.|++-
T Consensus 2 ~L~iDiGNT~~~~a~~~-~~~~~~~~r~~t~------~~~~~del~~~~~~l~~~~---~~~~~~~~~issv 63 (251)
T COG1521 2 LLLIDIGNTRIVFALYE-GGKVVQTWRLATE------DLLTEDELGLQLHNLFDGN---SVRDIDGIVISSV 63 (251)
T ss_pred eEEEEeCCCeEEEEEec-CCeEEEEEeeccc------ccccHHHHHHHHHHHhccc---cccccccceeecc
Confidence 58999999999999998 6777776666554 3333455555555544443 2356777777764
No 80
>PRK10854 exopolyphosphatase; Provisional
Probab=83.00 E-value=4.3 Score=41.67 Aligned_cols=74 Identities=9% Similarity=0.076 Sum_probs=40.7
Q ss_pred ceEEEEEeCccCceEEEEeCC-C--cEEEEEEEeecCcCC--ccccccHHHHHHHHHHHHHhc---hhc-CCCCccEEEE
Q 037497 71 RLYLGMDFGTSGARFAIINKD-G--TILSEGKKEYPKFTT--EESIDWLRSWKVTLFSLLEAV---PVN-LRPLIASISI 141 (333)
Q Consensus 71 ~~~lGIDiGTTsiKa~l~D~~-G--~il~~~~~~~~~~~p--g~~e~d~~~~~~~i~~~l~~l---~~~-~~~~I~aIgi 141 (333)
..+.+||+|+.|+|..+++.+ | +++.+.+..+.+-.. .....+++.+-+ ..+++++. ... ...++.+++-
T Consensus 11 ~~~A~IDIGSNSirL~I~e~~~~~~~~i~~~k~~vrLg~g~~~~g~Ls~e~~~r-~~~~L~~F~~~~~~~~v~~v~~vAT 89 (513)
T PRK10854 11 QEFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLDSDNMLSEEAMER-GLNCLSLFAERLQGFSPANVCIVGT 89 (513)
T ss_pred CEEEEEEeccchheEEEEEecCCcEEEeeeeeEEEECCCCcCCCCCcCHHHHHH-HHHHHHHHHHHHHhCCCCeEEEEeh
Confidence 478999999999999999954 3 455555555543210 112233333322 22222222 211 2356777777
Q ss_pred ecCC
Q 037497 142 DGTS 145 (333)
Q Consensus 142 s~~~ 145 (333)
++.+
T Consensus 90 sAlR 93 (513)
T PRK10854 90 HTLR 93 (513)
T ss_pred HHHH
Confidence 7654
No 81
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=82.54 E-value=1.9 Score=41.89 Aligned_cols=57 Identities=19% Similarity=0.082 Sum_probs=41.0
Q ss_pred EEEeCccCceEEEEeCCCcEEEEEEEeecCcCCccccccHHHHHHHHHHHHHhchhcCCCCccEEEE-ecCC
Q 037497 75 GMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVNLRPLIASISI-DGTS 145 (333)
Q Consensus 75 GIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgi-s~~~ 145 (333)
|||=||+|...+.+|++|+++...+.++. ....+|..+.+.+.+. +++..|.. +++|
T Consensus 1 GIDpGT~s~dv~~~dd~g~v~~~~~ipt~-----~v~~~p~~iv~~l~~~---------~~~dlIa~psGyG 58 (343)
T PF07318_consen 1 GIDPGTKSFDVCGLDDDGKVIFYFSIPTE-----EVAKNPSIIVEELEEF---------GDIDLIAGPSGYG 58 (343)
T ss_pred CCCCCCCcEEEEEEccCCcEEEEeeccHH-----HhhhCHHHHHHHHHhc---------cCCCEEEeCCcCC
Confidence 79999999999999999999988777664 2557777666555443 24556654 4445
No 82
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=80.75 E-value=3.7 Score=38.25 Aligned_cols=26 Identities=35% Similarity=0.625 Sum_probs=22.3
Q ss_pred ceEEEEEeCccCceEEEEeCCCcEEE
Q 037497 71 RLYLGMDFGTSGARFAIINKDGTILS 96 (333)
Q Consensus 71 ~~~lGIDiGTTsiKa~l~D~~G~il~ 96 (333)
..|+|||-|||.+|.+++|.++.+..
T Consensus 3 m~fVGiDHGTsgi~~ai~d~e~~~~F 28 (332)
T COG4020 3 MMFVGIDHGTSGIKFAIYDGEKDPEF 28 (332)
T ss_pred eEEEeecCCCcceEEEEEcCCCCceE
Confidence 36899999999999999998876543
No 83
>PLN02666 5-oxoprolinase
Probab=80.58 E-value=6.5 Score=44.75 Aligned_cols=70 Identities=14% Similarity=0.011 Sum_probs=42.0
Q ss_pred CceEEEEEeCccCceEEEEeCCCcEEEEEEEeecCcCCccccccH-HHHHHHHHHHHHhch-----hc---CCCCccEEE
Q 037497 70 ERLYLGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWL-RSWKVTLFSLLEAVP-----VN---LRPLIASIS 140 (333)
Q Consensus 70 ~~~~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~pg~~e~d~-~~~~~~i~~~l~~l~-----~~---~~~~I~aIg 140 (333)
+.|.+|||+|+|-+-++++|.++.-+...+.++. .| .|+ +.+.+.+.++++++. .. ...+|..|.
T Consensus 8 ~~~rigIDvGGTFTD~v~~~~~~~~~~~~K~~st--tp----~d~~~gv~~Gi~~~l~~~~~~~~~~~~~~~~~~i~~v~ 81 (1275)
T PLN02666 8 RKFRFCIDRGGTFTDVYAEVPGGSDFRVLKLLSV--DP----ANYDDAPREGIRRILEEVTGKKIPRSAKIPTERIEWIR 81 (1275)
T ss_pred CCEEEEEECCcCCEeEEEEecCCCeEEEEEeCCC--CC----CChhHHHHHHHHHHHHHHhcCCcccccCCChHHccEEE
Confidence 3589999999999999999987654444444431 11 222 345666666655542 00 234566666
Q ss_pred EecCC
Q 037497 141 IDGTS 145 (333)
Q Consensus 141 is~~~ 145 (333)
.++..
T Consensus 82 hGTT~ 86 (1275)
T PLN02666 82 MGTTV 86 (1275)
T ss_pred EechH
Confidence 65553
No 84
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=79.71 E-value=5.8 Score=38.69 Aligned_cols=71 Identities=20% Similarity=0.170 Sum_probs=46.2
Q ss_pred eEEEEEeCccCceEEEEeCCCcEEEEEEEeecCcCC-cc-----ccccHHHHHHHHHHHHHhchhcCCCCccEEEEec
Q 037497 72 LYLGMDFGTSGARFAIINKDGTILSEGKKEYPKFTT-EE-----SIDWLRSWKVTLFSLLEAVPVNLRPLIASISIDG 143 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~p-g~-----~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~ 143 (333)
.+||||--+.-+-++|+|.+|+++..........+- |- ..+-.+.+...+.+++++... ...+|.+|+++.
T Consensus 2 ~iLgIETScd~tsvAl~~~~~~il~~~~~sq~~~~G~GvvP~~a~r~H~~~l~~~i~~~l~~a~~-~~~did~Iavt~ 78 (345)
T PTZ00340 2 LALGIEGSANKLGVGIVTSDGEILSNVRETYITPPGTGFLPRETAQHHREHILSLVKEALEEAKI-TPSDISLICYTK 78 (345)
T ss_pred eEEEEEccchhhEEEEEECCCcEEEEEEeeccccCCCCcCchHHHHHHHHHHHHHHHHHHHHcCC-CHHHCCEEEEec
Confidence 589999999999999999888888765543321111 11 222344455556666666433 456899999875
No 85
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=78.90 E-value=4.1 Score=38.14 Aligned_cols=30 Identities=27% Similarity=0.417 Sum_probs=21.2
Q ss_pred eEEEEEeCccCceEEEEeCCCcEEEEEEEeec
Q 037497 72 LYLGMDFGTSGARFAIINKDGTILSEGKKEYP 103 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~ 103 (333)
-++|||||+-++|++. .+|.......+-+|
T Consensus 4 kilGiDIGGAntk~a~--~DG~~~~~d~~YlP 33 (330)
T COG1548 4 KILGIDIGGANTKIAS--SDGDNYKIDHIYLP 33 (330)
T ss_pred eEEEeeccCccchhhh--ccCCeeeeeEEEec
Confidence 3799999999999998 55665443333334
No 86
>PRK03011 butyrate kinase; Provisional
Probab=78.72 E-value=3.6 Score=40.29 Aligned_cols=31 Identities=13% Similarity=0.185 Sum_probs=24.0
Q ss_pred eEEEEEeCccCceEEEEeCCCcEEEEEEEeec
Q 037497 72 LYLGMDFGTSGARFAIINKDGTILSEGKKEYP 103 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~ 103 (333)
.+|+|.-|+||+|.++|+. .+.+......++
T Consensus 3 ~il~inpgststk~a~~~~-~~~~~~~~~~h~ 33 (358)
T PRK03011 3 RILVINPGSTSTKIAVFED-EKPIFEETLRHS 33 (358)
T ss_pred EEEEEcCCCchheEEEEcC-CceeeeeccccC
Confidence 4899999999999999984 455555555554
No 87
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=78.58 E-value=3.9 Score=40.88 Aligned_cols=57 Identities=16% Similarity=0.040 Sum_probs=36.7
Q ss_pred ceEEEEEeCccCceEEEEeCC--CcEEEEEEEeecCcCCc-c-ccccHHHHHHHHHHHHHhchh
Q 037497 71 RLYLGMDFGTSGARFAIINKD--GTILSEGKKEYPKFTTE-E-SIDWLRSWKVTLFSLLEAVPV 130 (333)
Q Consensus 71 ~~~lGIDiGTTsiKa~l~D~~--G~il~~~~~~~~~~~pg-~-~e~d~~~~~~~i~~~l~~l~~ 130 (333)
.-+|+||+|+|+.|++++..+ |+..-+.+ ++. -|. . ....++++|..+.+.++....
T Consensus 75 g~~LaiD~GGTnlRvc~V~l~g~gt~~~~~s-ks~--lp~e~~~~~~~~~l~~~iadrl~~fi~ 135 (466)
T COG5026 75 GSVLAIDLGGTNLRVCLVVLGGDGTFDIEQS-KSF--LPVECRDSESRDELFGFIADRLAAFIK 135 (466)
T ss_pred CCEEEEecCCceEEEEEEEeCCCCCcccccC-ccc--CchhhccCCChHHHHHHHHHHHHHHHH
Confidence 358999999999999999865 44332221 111 121 1 223688888888777776554
No 88
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=78.07 E-value=3 Score=42.38 Aligned_cols=34 Identities=26% Similarity=0.480 Sum_probs=28.1
Q ss_pred CceEEEEEeCccCceEEEEeC-CCcEEEEEEEeec
Q 037497 70 ERLYLGMDFGTSGARFAIINK-DGTILSEGKKEYP 103 (333)
Q Consensus 70 ~~~~lGIDiGTTsiKa~l~D~-~G~il~~~~~~~~ 103 (333)
+.|=+++|+|||.+++.++|. +|+++++.....+
T Consensus 163 ~~YGvAvDlGTS~i~aqlVDL~sgevv~t~~T~n~ 197 (614)
T COG3894 163 EAYGVAVDLGTSGIRAQLVDLKSGEVVATVITSNP 197 (614)
T ss_pred eeeeeEEecccceeeeEEEeccCCcEEEeeeccCC
Confidence 468899999999999999995 6899887754433
No 89
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=76.35 E-value=5.6 Score=32.31 Aligned_cols=55 Identities=15% Similarity=0.102 Sum_probs=27.2
Q ss_pred EEEEEeCccCceEEEEeCCCcEEEEEEEeecCcCC-c---cccccHHHHHHHHHHHHHhc
Q 037497 73 YLGMDFGTSGARFAIINKDGTILSEGKKEYPKFTT-E---ESIDWLRSWKVTLFSLLEAV 128 (333)
Q Consensus 73 ~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~p-g---~~e~d~~~~~~~i~~~l~~l 128 (333)
+++||+|++.++++++.. +........++..... | ..-.|.+++-.+++..++++
T Consensus 1 i~~iDiGs~~~~~~i~~~-~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~a~~~A 59 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAED-GSDGYIRVLGVGEVPSKGIKGGHITDIEDISKAIKIAIEEA 59 (120)
T ss_dssp EEEEEE-SSSEEEEEEET-TEEEEEEEES----------HHHHH--HHHHHHHT--HHHH
T ss_pred CEEEEcCCCcEEEEEEEe-CCCCcEEEEEEecccccccCCCEEEEHHHHHHHHHHHHHHH
Confidence 478999999999999986 3222223233321111 2 12345566666666666554
No 90
>PRK09604 UGMP family protein; Validated
Probab=75.44 E-value=9.9 Score=36.72 Aligned_cols=71 Identities=15% Similarity=0.153 Sum_probs=45.9
Q ss_pred eEEEEEeCccCceEEEEeCCCcEEEEEEEeecC-c------CCcc-ccccHHHHHHHHHHHHHhchhcCCCCccEEEEec
Q 037497 72 LYLGMDFGTSGARFAIINKDGTILSEGKKEYPK-F------TTEE-SIDWLRSWKVTLFSLLEAVPVNLRPLIASISIDG 143 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~-~------~pg~-~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~ 143 (333)
++||||--+..+-++|+|.+++++......... . .|.. ..+-.+.+...+.+++++... ...+|.+|+++.
T Consensus 2 ~iLgIdTS~~~~sval~~~~~~il~~~~~~~~~~~~~~~Gi~P~~a~~~H~~~l~~~i~~~L~~~~~-~~~did~iavt~ 80 (332)
T PRK09604 2 LILGIETSCDETSVAVVDDGRGLLSNVVASQIDLHARYGGVVPELASRAHVENIVPLIEEALKEAGL-TLEDIDAIAVTA 80 (332)
T ss_pred eEEEEEccccceEEEEEECCCcEEEEEEecchhcccccCCcCcchhHHHHHHHHHHHHHHHHHHcCC-CHHHCCEEEEec
Confidence 589999988888999999877888765432210 0 1211 233345555666777776543 456789998875
No 91
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=75.24 E-value=2.7 Score=44.20 Aligned_cols=19 Identities=26% Similarity=0.590 Sum_probs=17.4
Q ss_pred eEEEEEeCccCceEEEEeC
Q 037497 72 LYLGMDFGTSGARFAIINK 90 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~ 90 (333)
.++|||+|||+.++++++.
T Consensus 3 ~viGIDlGTt~s~va~~~~ 21 (627)
T PRK00290 3 KIIGIDLGTTNSCVAVMEG 21 (627)
T ss_pred cEEEEEeCcccEEEEEEEC
Confidence 5899999999999999984
No 92
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=73.97 E-value=3.5 Score=43.61 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=19.5
Q ss_pred cCCceEEEEEeCccCceEEEEeC
Q 037497 68 VGERLYLGMDFGTSGARFAIINK 90 (333)
Q Consensus 68 M~~~~~lGIDiGTTsiKa~l~D~ 90 (333)
|+...++|||+|||+.++++++.
T Consensus 1 ~~~~~~iGIDlGTt~s~va~~~~ 23 (653)
T PTZ00009 1 MTKGPAIGIDLGTTYSCVGVWKN 23 (653)
T ss_pred CCcccEEEEEeCcccEEEEEEeC
Confidence 44556899999999999999875
No 93
>PF05035 DGOK: 2-keto-3-deoxy-galactonokinase; InterPro: IPR007729 2-keto-3-deoxy-galactonokinase 2.7.1.58 from EC is a bacterial transferase that catalyses the second step in D-galactonate degradation. ATP + 2-dehydro-3-deoxy-D-galactonate = ADP + 2-dehydro-3-deoxy-D-galactonate 6-phosphate D-Galactonate is catabolized in saprophytic mycobacteria to give pyruvate and glyceraldehyde-3-phosphate by a pathway that involves galactonate dehydratase, 2-keto-3-deoxy-galactonate kinase, and 6-phospho-2-keto-3-deoxy-galactonate aldolase [].; PDB: 3R1X_D 3T69_B.
Probab=73.85 E-value=2.6 Score=40.01 Aligned_cols=27 Identities=33% Similarity=0.561 Sum_probs=20.0
Q ss_pred EeCccCceEEEEeCCCcEEEEEEEeec
Q 037497 77 DFGTSGARFAIINKDGTILSEGKKEYP 103 (333)
Q Consensus 77 DiGTTsiKa~l~D~~G~il~~~~~~~~ 103 (333)
|=||||.|+-++|.+|+++.+.+.+..
T Consensus 1 DWGTSnlR~~l~~~~g~vl~~~~~~~G 27 (287)
T PF05035_consen 1 DWGTSNLRAWLMDEDGQVLAERSSPVG 27 (287)
T ss_dssp EE-SS-EEEEEE-CTTEEEEEEEES--
T ss_pred CCchhhhhhheecCCCcEEeeecCCcC
Confidence 789999999999999999998876554
No 94
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=73.38 E-value=8.3 Score=31.90 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=24.9
Q ss_pred EEEEEeCccCceEEEEeCCCcEEEEEEEee
Q 037497 73 YLGMDFGTSGARFAIINKDGTILSEGKKEY 102 (333)
Q Consensus 73 ~lGIDiGTTsiKa~l~D~~G~il~~~~~~~ 102 (333)
|+|||+|....-++++|.+|..+.....+.
T Consensus 1 ~vGiDv~k~~~~v~v~~~~~~~~~~~~~~~ 30 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDPNGEKLRRFKFEN 30 (144)
T ss_pred eEEEEcccCeEEEEEEcCCCcEEEEEEEec
Confidence 689999999999999999997766555443
No 95
>TIGR03725 bact_YeaZ universal bacterial protein YeaZ. This family describes a protein family, YeaZ, that appears to be universal in bacteria, but whose function is unknown. This family is related to the gcp (glycoprotease) protein family, also universal in bacteria and unknown in function. In Gram-positive lineages, members of these two related families often belong to the same operon, along with the ribosomal-protein-alanine acetyltransferase gene. Members of this family may occur as fusions with gcp or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI.
Probab=72.91 E-value=9.2 Score=34.05 Aligned_cols=62 Identities=21% Similarity=0.244 Sum_probs=43.0
Q ss_pred EEEEEeCccCceEEEEeCCCcEEEEEEEeecCcCCccccccHHHHHHHHHHHHHhchhcCCCCccEEEEec
Q 037497 73 YLGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVNLRPLIASISIDG 143 (333)
Q Consensus 73 ~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~ 143 (333)
+|+||--+..+-+++++ +++++.+..... .....+.+...+.+++++... ...+|.+|+++.
T Consensus 1 iLaidTs~~~~sval~~-~~~~~~~~~~~~-------~~~h~~~l~~~i~~~l~~~~~-~~~~i~~iav~~ 62 (202)
T TIGR03725 1 ILAIDTSTEALSVALLD-DGEILAERSEEA-------GRNHSEILLPMIEELLAEAGL-SLQDLDAIAVGV 62 (202)
T ss_pred CEEEECCCcceEEEEEE-CCEEEEEEeehh-------hHHHHHHHHHHHHHHHHHcCC-CHHHCCEEEEec
Confidence 47899999999999998 677776544322 123345666777777777644 456788888864
No 96
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=72.81 E-value=12 Score=33.40 Aligned_cols=20 Identities=25% Similarity=0.519 Sum_probs=16.9
Q ss_pred EEEEEeCccCceEEEEeCCC
Q 037497 73 YLGMDFGTSGARFAIINKDG 92 (333)
Q Consensus 73 ~lGIDiGTTsiKa~l~D~~G 92 (333)
+|.||+|-|++|.+++|.+.
T Consensus 1 ~L~iDiGNT~ik~~~~~~~~ 20 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDGDK 20 (206)
T ss_dssp EEEEEE-SSEEEEEEEETTE
T ss_pred CEEEEECCCeEEEEEEECCE
Confidence 57899999999999999764
No 97
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=72.37 E-value=9.2 Score=36.25 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=22.2
Q ss_pred EEEEEeCccCceEEEEeCC-C--cEEEEEEEeec
Q 037497 73 YLGMDFGTSGARFAIINKD-G--TILSEGKKEYP 103 (333)
Q Consensus 73 ~lGIDiGTTsiKa~l~D~~-G--~il~~~~~~~~ 103 (333)
+.+||+|+.++|..+++.+ + +++...+.++.
T Consensus 2 ~AvIDiGSNsirl~I~~~~~~~~~~l~~~~~~vr 35 (300)
T TIGR03706 2 IAAIDIGSNSVRLVIARGVEGSLQVLFNEKEMVR 35 (300)
T ss_pred eEEEEecCCeeeEEEEEecCCcEEEhhheeeeee
Confidence 5789999999999999964 3 44444444443
No 98
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=72.09 E-value=15 Score=37.71 Aligned_cols=71 Identities=14% Similarity=0.138 Sum_probs=45.6
Q ss_pred eEEEEEeCccCceEEEEeCCCcEEEEEEEeecCcCCccc-----cccHHHHHHHHHHHHHhchhcCCCCccEEEEec
Q 037497 72 LYLGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEES-----IDWLRSWKVTLFSLLEAVPVNLRPLIASISIDG 143 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~pg~~-----e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~ 143 (333)
++||||--+..+-++|++.+|++++.........+-|-. ..-.+.+-..+.+++++... ...+|.+|+++.
T Consensus 2 ~il~iets~~~~s~a~~~~~~~~~~~~~~~~~~~~gg~~p~~~~~~H~~~l~~~i~~~l~~~~~-~~~~id~iav~~ 77 (535)
T PRK09605 2 IVLGIEGTAWKTSAGIVDSDGDVLFNESDPYKPPSGGIHPREAAEHHAEAIPKVIKEALEEAGL-KPEDIDLVAFSQ 77 (535)
T ss_pred EEEEEEccccceEEEEEeCCCcEEEEEEeeccCCcCCCChHHHHHHHHHHHHHHHHHHHHHcCC-CHhhCCEEEECC
Confidence 689999999999999999777888776544221111211 11223344455666665433 457899999974
No 99
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=71.45 E-value=12 Score=35.77 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=17.1
Q ss_pred ceEEEEEeCccCceEEEEeC-CCcE
Q 037497 71 RLYLGMDFGTSGARFAIINK-DGTI 94 (333)
Q Consensus 71 ~~~lGIDiGTTsiKa~l~D~-~G~i 94 (333)
...+| |||+|+.|.+|+.. .+++
T Consensus 7 p~Lvg-DIGGTnaRfaLv~~a~~~~ 30 (320)
T COG0837 7 PRLVG-DIGGTNARFALVEIAPAEP 30 (320)
T ss_pred ceEEE-ecCCcceEEEEeccCCCCc
Confidence 34555 99999999999775 4443
No 100
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=70.75 E-value=9.6 Score=38.70 Aligned_cols=90 Identities=11% Similarity=0.019 Sum_probs=50.2
Q ss_pred eEEEEEeCccCceEEEEeCCCc--EEEEEEEeecCcCCcc-ccccHHHHHHHHHHHHHhchhc-CCC-Cc-cEEEEecCC
Q 037497 72 LYLGMDFGTSGARFAIINKDGT--ILSEGKKEYPKFTTEE-SIDWLRSWKVTLFSLLEAVPVN-LRP-LI-ASISIDGTS 145 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~~G~--il~~~~~~~~~~~pg~-~e~d~~~~~~~i~~~l~~l~~~-~~~-~I-~aIgis~~~ 145 (333)
-+++||+|+|+.|+.++-..|. .+......|.. |.. ..-..+++|+.|..++....+. ... .- .=+|++--
T Consensus 87 ~~lalDLGGTn~Rv~~v~L~g~~~~~~~~~~~~~i--p~~~m~gt~~~Lfd~Ia~~l~~F~~~~~~~~~~~l~lgFTFS- 163 (474)
T KOG1369|consen 87 KFLALDLGGTNFRVLLVKLGGGRTSVRMYNKIYAI--PEEIMQGTGEELFDFIARCLADFLDKMGLKGASKLPLGFTFS- 163 (474)
T ss_pred CEEEEecCCCceEEEEEEecCCcccceeeeeeEec--CHHHHcCchHHHHHHHHHHHHHHHHHhccccccccccceEEe-
Confidence 5899999999999999997765 23333223322 211 1225677888887777765543 111 11 34455433
Q ss_pred ceEEEEeCCCCccccCCcccCCC
Q 037497 146 ATTIIIDSNSGEPLWRPFLYNES 168 (333)
Q Consensus 146 ~s~v~vD~~~G~pl~p~i~W~D~ 168 (333)
.|++. ++.--.-.+.|...
T Consensus 164 ---fP~~Q-~si~~g~L~~wTkG 182 (474)
T KOG1369|consen 164 ---FPCRQ-TSIDKGTLIRWTKG 182 (474)
T ss_pred ---eeeee-cccccceEEEeccc
Confidence 36665 43222223457654
No 101
>CHL00094 dnaK heat shock protein 70
Probab=70.20 E-value=4.2 Score=42.74 Aligned_cols=21 Identities=29% Similarity=0.621 Sum_probs=18.3
Q ss_pred eEEEEEeCccCceEEEEeCCCc
Q 037497 72 LYLGMDFGTSGARFAIINKDGT 93 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~~G~ 93 (333)
+++|||+|||+.++++++. |+
T Consensus 3 ~viGIDlGTt~s~va~~~~-g~ 23 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVMEG-GK 23 (621)
T ss_pred ceEEEEeCcccEEEEEEEC-CE
Confidence 6899999999999999974 43
No 102
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=69.56 E-value=5.3 Score=42.32 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=18.5
Q ss_pred ceEEEEEeCccCceEEEEeCC
Q 037497 71 RLYLGMDFGTSGARFAIINKD 91 (333)
Q Consensus 71 ~~~lGIDiGTTsiKa~l~D~~ 91 (333)
.+++|||+|||+..+++++..
T Consensus 27 ~~viGIDLGTTnS~vA~~~~~ 47 (657)
T PTZ00186 27 GDVIGVDLGTTYSCVATMDGD 47 (657)
T ss_pred ceEEEEEeCcCeEEEEEEeCC
Confidence 468999999999999999754
No 103
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=68.91 E-value=19 Score=35.73 Aligned_cols=28 Identities=32% Similarity=0.611 Sum_probs=22.6
Q ss_pred EEEEEeCccCceEEEEeCC-CcEEEEEEE
Q 037497 73 YLGMDFGTSGARFAIINKD-GTILSEGKK 100 (333)
Q Consensus 73 ~lGIDiGTTsiKa~l~D~~-G~il~~~~~ 100 (333)
+|.|..|+||+|.+|||.+ .+++.+...
T Consensus 2 ILVIN~GSSS~Kfalf~~~~~~~l~~g~~ 30 (388)
T PF00871_consen 2 ILVINPGSSSTKFALFDMDSGEVLASGLV 30 (388)
T ss_dssp EEEEEEESSEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEcCChHhheeeeEECCCCCeeeechh
Confidence 6899999999999999975 567665443
No 104
>PRK13410 molecular chaperone DnaK; Provisional
Probab=68.52 E-value=5.1 Score=42.56 Aligned_cols=22 Identities=27% Similarity=0.582 Sum_probs=18.7
Q ss_pred ceEEEEEeCccCceEEEEeCCCc
Q 037497 71 RLYLGMDFGTSGARFAIINKDGT 93 (333)
Q Consensus 71 ~~~lGIDiGTTsiKa~l~D~~G~ 93 (333)
.+++|||+|||+.++++++. |+
T Consensus 2 ~~viGIDlGTt~s~va~~~~-g~ 23 (668)
T PRK13410 2 GRIVGIDLGTTNSVVAVMEG-GK 23 (668)
T ss_pred CcEEEEEeCCCcEEEEEEEC-Ce
Confidence 36899999999999999974 54
No 105
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=68.35 E-value=16 Score=30.83 Aligned_cols=29 Identities=31% Similarity=0.464 Sum_probs=23.6
Q ss_pred ceEEEEEeCccCceEEEEeCCCcEEEEEEE
Q 037497 71 RLYLGMDFGTSGARFAIINKDGTILSEGKK 100 (333)
Q Consensus 71 ~~~lGIDiGTTsiKa~l~D~~G~il~~~~~ 100 (333)
.+++|||=|+|.--| ++|.+|+++...+.
T Consensus 32 ~lIVGiDPG~ttgiA-ildL~G~~l~l~S~ 60 (138)
T PF04312_consen 32 YLIVGIDPGTTTGIA-ILDLDGELLDLKSS 60 (138)
T ss_pred CEEEEECCCceeEEE-EEecCCcEEEEEee
Confidence 478999999987655 57999999987654
No 106
>PRK13411 molecular chaperone DnaK; Provisional
Probab=67.64 E-value=5.2 Score=42.32 Aligned_cols=21 Identities=29% Similarity=0.638 Sum_probs=18.3
Q ss_pred eEEEEEeCccCceEEEEeCCCc
Q 037497 72 LYLGMDFGTSGARFAIINKDGT 93 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~~G~ 93 (333)
.++|||+|||+.++++++. |+
T Consensus 3 ~viGIDlGTt~s~va~~~~-g~ 23 (653)
T PRK13411 3 KVIGIDLGTTNSCVAVLEG-GK 23 (653)
T ss_pred cEEEEEeCcccEEEEEEEC-CE
Confidence 6899999999999999874 54
No 107
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=67.21 E-value=5.3 Score=41.69 Aligned_cols=22 Identities=27% Similarity=0.623 Sum_probs=19.4
Q ss_pred ceEEEEEeCccCceEEEEeCCC
Q 037497 71 RLYLGMDFGTSGARFAIINKDG 92 (333)
Q Consensus 71 ~~~lGIDiGTTsiKa~l~D~~G 92 (333)
+.++|||+|||+..+++++.++
T Consensus 5 ~~~iGIDlGTTNS~vA~~~~~~ 26 (579)
T COG0443 5 KKAIGIDLGTTNSVVAVMRGGG 26 (579)
T ss_pred ceEEEEEcCCCcEEEEEEeCCC
Confidence 4689999999999999999663
No 108
>PRK11678 putative chaperone; Provisional
Probab=66.83 E-value=4.6 Score=40.82 Aligned_cols=20 Identities=35% Similarity=0.943 Sum_probs=17.4
Q ss_pred EEEEEeCccCceEEEEeCCCc
Q 037497 73 YLGMDFGTSGARFAIINKDGT 93 (333)
Q Consensus 73 ~lGIDiGTTsiKa~l~D~~G~ 93 (333)
++|||+||||.-+++++ +|+
T Consensus 2 ~iGID~GTtNs~va~~~-~~~ 21 (450)
T PRK11678 2 FIGFDYGTANCSVAVMR-DGK 21 (450)
T ss_pred eEEEecCccceeeEEee-CCc
Confidence 68999999999999998 453
No 109
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=66.35 E-value=18 Score=36.94 Aligned_cols=75 Identities=12% Similarity=0.168 Sum_probs=41.1
Q ss_pred CceEEEEEeCccCceEEEEeC-CC--cEEEEEEEeecCcC--CccccccHHHHHHHHHHHHHhch---hc-CCCCccEEE
Q 037497 70 ERLYLGMDFGTSGARFAIINK-DG--TILSEGKKEYPKFT--TEESIDWLRSWKVTLFSLLEAVP---VN-LRPLIASIS 140 (333)
Q Consensus 70 ~~~~lGIDiGTTsiKa~l~D~-~G--~il~~~~~~~~~~~--pg~~e~d~~~~~~~i~~~l~~l~---~~-~~~~I~aIg 140 (333)
.+++.+|||||.|+|..+++. +| +++...+..+.+-. .......++.+-. ..+++++.. .. ...+|.+++
T Consensus 5 ~~~~A~IDIGSNSirL~I~~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r-~~~~L~~F~~~~~~~~v~~i~~vA 83 (496)
T PRK11031 5 SSLYAAIDLGSNSFHMLVVREVAGSIQTLARIKRKVRLAAGLDSDNALSNEAMER-GWQCLRLFAERLQDIPPSQIRVVA 83 (496)
T ss_pred CCEEEEEEccccceeEEEEEecCCceEEeecceeEEEccCCcCcCCCcCHHHHHH-HHHHHHHHHHHHHhCCCCeEEEEE
Confidence 357899999999999999995 34 34444444444321 1112233333322 222222221 11 345688888
Q ss_pred EecCC
Q 037497 141 IDGTS 145 (333)
Q Consensus 141 is~~~ 145 (333)
-++.+
T Consensus 84 TsAvR 88 (496)
T PRK11031 84 TATLR 88 (496)
T ss_pred eHHHH
Confidence 77765
No 110
>PRK00976 hypothetical protein; Provisional
Probab=65.88 E-value=16 Score=35.42 Aligned_cols=18 Identities=56% Similarity=1.161 Sum_probs=16.7
Q ss_pred eEEEEEeCccCceEEEEe
Q 037497 72 LYLGMDFGTSGARFAIIN 89 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D 89 (333)
+|+|||=|||.+|.++++
T Consensus 2 ~~~g~dhgt~~~~~~~~~ 19 (326)
T PRK00976 2 MFVGIDHGTTGIRFAIIE 19 (326)
T ss_pred eEEeecCCCccEEEEEEc
Confidence 589999999999999994
No 111
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=65.30 E-value=14 Score=35.13 Aligned_cols=69 Identities=19% Similarity=0.166 Sum_probs=44.2
Q ss_pred EEEEeCccCceEEEEeCCCcEEEEEEEeecCcCC---cc-----ccccHHHHHHHHHHHHHhchhcCCCCccEEEEec
Q 037497 74 LGMDFGTSGARFAIINKDGTILSEGKKEYPKFTT---EE-----SIDWLRSWKVTLFSLLEAVPVNLRPLIASISIDG 143 (333)
Q Consensus 74 lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~p---g~-----~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~ 143 (333)
||||-.+.-+-++|+|.+++++..........+. |- ..+-.+.+...+.+++++... ...+|.+|+++.
T Consensus 1 LaidTs~~~~sval~~~~~~il~~~~~~~~~~~~~~gGi~p~~~~~~H~~~l~~~i~~~l~~~~~-~~~did~iav~~ 77 (305)
T TIGR00329 1 LGIETSCDDTGVAIVDEEGNVLANIKISQIPLHAKYGGVVPEEASRHHAENIPPLLERALIESNV-DKSEIDLIAYTQ 77 (305)
T ss_pred CEEecCccceEEEEEECCCcEEEEEEecccccccccCCcCcchhHHHHHHHHHHHHHHHHHHcCC-CHHHCCEEEEec
Confidence 5889888899999998668888876554432211 11 122234455556666666433 466899999976
No 112
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=64.70 E-value=43 Score=28.97 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=20.2
Q ss_pred eEEEEEeCccCceEEEEeCCCc
Q 037497 72 LYLGMDFGTSGARFAIINKDGT 93 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~~G~ 93 (333)
.+||||-|++++=.++++.+|+
T Consensus 3 ~iLGIDPgl~~tG~avi~~~~~ 24 (164)
T PRK00039 3 RILGIDPGLRRTGYGVIEVEGR 24 (164)
T ss_pred EEEEEccccCceeEEEEEecCC
Confidence 5899999999999999998776
No 113
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=63.48 E-value=20 Score=34.37 Aligned_cols=69 Identities=17% Similarity=0.139 Sum_probs=43.4
Q ss_pred EEEEeCccCceEEEEeCCCcEEEEEEEeecCcCCccc-----cccHHHHHHHHHHHHHhchhcCCCCccEEEEec
Q 037497 74 LGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEES-----IDWLRSWKVTLFSLLEAVPVNLRPLIASISIDG 143 (333)
Q Consensus 74 lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~pg~~-----e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~ 143 (333)
||||-.+.-+-++|++.++++++.........+-|.. .+-.+.+...+.+++++... ...+|.+|+++.
T Consensus 1 Lgiets~~~~s~al~~~~~~i~~~~~~~~~~~~gg~~p~~~~~~H~~~l~~~i~~~l~~~~~-~~~did~Iavt~ 74 (322)
T TIGR03722 1 LGIEGTAHTFGVGIVDEDGEILANVSDTYVPEKGGIHPREAAEHHAEVAPKLIKEALEEAGV-SLEDIDAVAFSQ 74 (322)
T ss_pred CEEeccccceEEEEEECCCeEEEEEEeecccCcCCcChhHHHHHHHHHHHHHHHHHHHHcCC-CHHHCCEEEEec
Confidence 5788877788899998778888765544322111211 12234455556777776543 456899999985
No 114
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=63.35 E-value=6.4 Score=41.02 Aligned_cols=18 Identities=28% Similarity=0.661 Sum_probs=16.6
Q ss_pred EEEEEeCccCceEEEEeC
Q 037497 73 YLGMDFGTSGARFAIINK 90 (333)
Q Consensus 73 ~lGIDiGTTsiKa~l~D~ 90 (333)
++|||+|||+.++++++.
T Consensus 2 viGIDlGtt~s~va~~~~ 19 (595)
T TIGR02350 2 IIGIDLGTTNSCVAVMEG 19 (595)
T ss_pred EEEEEeCcccEEEEEEEC
Confidence 699999999999999975
No 115
>PRK12440 acetate kinase; Reviewed
Probab=63.32 E-value=12 Score=37.13 Aligned_cols=31 Identities=26% Similarity=0.479 Sum_probs=25.0
Q ss_pred cCCceEEEEEeCccCceEEEEeCC-CcEEEEE
Q 037497 68 VGERLYLGMDFGTSGARFAIINKD-GTILSEG 98 (333)
Q Consensus 68 M~~~~~lGIDiGTTsiKa~l~D~~-G~il~~~ 98 (333)
|+.+++|.|..|++|+|..|||.+ .+++.+.
T Consensus 1 ~~~~~ILviN~GSSSlKf~l~~~~~~~~l~~G 32 (397)
T PRK12440 1 MSNSYVLVINSGSSSLKFAVIDSVTGEAVLSG 32 (397)
T ss_pred CCCCEEEEEECChHhheEEEEecCCCceEEEE
Confidence 567899999999999999999954 4555544
No 116
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=62.78 E-value=5.5 Score=41.18 Aligned_cols=19 Identities=26% Similarity=0.712 Sum_probs=15.9
Q ss_pred EEEEEeCccCceEEEEeCC
Q 037497 73 YLGMDFGTSGARFAIINKD 91 (333)
Q Consensus 73 ~lGIDiGTTsiKa~l~D~~ 91 (333)
++|||+|||++++++++..
T Consensus 1 viGID~Gt~~~~va~~~~~ 19 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNG 19 (602)
T ss_dssp EEEEEE-SSEEEEEEEETT
T ss_pred CEEEEeccCCEEEEEEEec
Confidence 5899999999999998853
No 117
>PRK07058 acetate kinase; Provisional
Probab=62.60 E-value=12 Score=37.06 Aligned_cols=31 Identities=23% Similarity=0.505 Sum_probs=24.7
Q ss_pred cCCceEEEEEeCccCceEEEEeCCC---cEEEEE
Q 037497 68 VGERLYLGMDFGTSGARFAIINKDG---TILSEG 98 (333)
Q Consensus 68 M~~~~~lGIDiGTTsiKa~l~D~~G---~il~~~ 98 (333)
|+.+++|.|..|++|+|..|||.+. +++...
T Consensus 1 ~~~~~iLviNaGSSSlKf~l~~~~~~~~~~l~~G 34 (396)
T PRK07058 1 MSKPLLLTFNAGSSTVKIGLFEVDGNEARRIGKG 34 (396)
T ss_pred CCCCEEEEEECChHhheeEEEecCCCCceEEEEE
Confidence 4678999999999999999999643 455443
No 118
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=61.85 E-value=44 Score=28.01 Aligned_cols=59 Identities=15% Similarity=0.071 Sum_probs=35.7
Q ss_pred eEEEEEeCccCceEEEEeCCCcEEEEEEEeecCcCCccccccHHHHHHHHHHHHHhchhcCCCCccEEEEecC
Q 037497 72 LYLGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVNLRPLIASISIDGT 144 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~~ 144 (333)
.+||||+|+-.+=+++-|..+.+. ......+. .+....++.+.+++++. +|..|-|+-+
T Consensus 5 ~iLalD~G~kriGvAv~d~~~~~a-~pl~~i~~-------~~~~~~~~~l~~~i~~~------~i~~iVvGlP 63 (138)
T PRK00109 5 RILGLDVGTKRIGVAVSDPLGGTA-QPLETIKR-------NNGTPDWDRLEKLIKEW------QPDGLVVGLP 63 (138)
T ss_pred cEEEEEeCCCEEEEEEecCCCCEE-cCEEEEEc-------CCCchHHHHHHHHHHHh------CCCEEEEecc
Confidence 489999999999999999877553 22111111 11112356666666653 4666666543
No 119
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=61.35 E-value=8.6 Score=39.34 Aligned_cols=75 Identities=12% Similarity=0.032 Sum_probs=39.6
Q ss_pred ceEEEEEeCccCceEEEEeCC-C--cEEEEEEEeecCcC--CccccccHHH---HHHHHHHHHHhchhcCCCCccEEEEe
Q 037497 71 RLYLGMDFGTSGARFAIINKD-G--TILSEGKKEYPKFT--TEESIDWLRS---WKVTLFSLLEAVPVNLRPLIASISID 142 (333)
Q Consensus 71 ~~~lGIDiGTTsiKa~l~D~~-G--~il~~~~~~~~~~~--pg~~e~d~~~---~~~~i~~~l~~l~~~~~~~I~aIgis 142 (333)
+.+.+||+||.|+|.++++.. | +++...+....+-. ......+++. .++++....+.+.....++|..|+-+
T Consensus 3 ~~~A~IDiGSNS~rlvV~~~~~~~~~~l~~~k~~vrLgegl~~~g~L~~eai~R~~~aL~~f~e~~~~~~~~~v~~vATs 82 (492)
T COG0248 3 RRVAAIDLGSNSFRLVVAEITPGSFQVLFREKRIVRLGEGLDATGNLSEEAIERALSALKRFAELLDGFGAEEVRVVATS 82 (492)
T ss_pred ceEEEEEecCCeEEEEEEeccCCccchhhhhhhheehhcCccccCCcCHHHHHHHHHHHHHHHHHHhhCCCCEEEEehhH
Confidence 468899999999999999954 3 44444433332211 1112233333 33333332222222134567777766
Q ss_pred cCC
Q 037497 143 GTS 145 (333)
Q Consensus 143 ~~~ 145 (333)
+.+
T Consensus 83 A~R 85 (492)
T COG0248 83 ALR 85 (492)
T ss_pred HHH
Confidence 654
No 120
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=60.99 E-value=22 Score=35.97 Aligned_cols=29 Identities=24% Similarity=0.446 Sum_probs=22.8
Q ss_pred EEeCccCceEEEEeCC-CcEEEEEEEeecC
Q 037497 76 MDFGTSGARFAIINKD-GTILSEGKKEYPK 104 (333)
Q Consensus 76 IDiGTTsiKa~l~D~~-G~il~~~~~~~~~ 104 (333)
+|+|+|.+|+.+||.+ ++++...+..+|+
T Consensus 1 ~DiGST~Tk~~a~~~~~~~~~~~~~~~tpT 30 (463)
T TIGR01319 1 LDFGSTWTKAAAFDIEGDAILATAHDITPI 30 (463)
T ss_pred CCccccceEEEEEecCCCcEEEEEeccCcc
Confidence 5999999999999955 6777776666653
No 121
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=60.61 E-value=8 Score=40.66 Aligned_cols=20 Identities=35% Similarity=0.657 Sum_probs=17.7
Q ss_pred ceEEEEEeCccCceEEEEeC
Q 037497 71 RLYLGMDFGTSGARFAIINK 90 (333)
Q Consensus 71 ~~~lGIDiGTTsiKa~l~D~ 90 (333)
.+++|||+|||+.++++++.
T Consensus 19 ~~~iGIDlGTt~s~va~~~~ 38 (616)
T PRK05183 19 RLAVGIDLGTTNSLVATVRS 38 (616)
T ss_pred CeEEEEEeccccEEEEEEEC
Confidence 47899999999999999864
No 122
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=60.46 E-value=24 Score=33.75 Aligned_cols=71 Identities=17% Similarity=0.143 Sum_probs=43.3
Q ss_pred EEEEEeCccCceEEEEeCCCcEEEEEEEeecC-c------CCcc-ccccHHHHHHHHHHHHHhchhcCCCCccEEEEecC
Q 037497 73 YLGMDFGTSGARFAIINKDGTILSEGKKEYPK-F------TTEE-SIDWLRSWKVTLFSLLEAVPVNLRPLIASISIDGT 144 (333)
Q Consensus 73 ~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~-~------~pg~-~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~~ 144 (333)
+|+||--+..+-++|+|.+++++......... . .|.. ..+-.+.+...+.+++++... ...+|.+|+++.-
T Consensus 1 iLaIdTs~~~~sval~~~~~~il~~~~~~~~~~~~~~gGi~p~~~~~~H~~~l~~~i~~~l~~~~~-~~~~id~iav~~G 79 (314)
T TIGR03723 1 ILGIETSCDETAVAIVDDGKGLLSNIVASQIELHARYGGVVPELASRAHLEAIPPLIEEALAEAGL-TLSDIDAIAVTAG 79 (314)
T ss_pred CEEEECcccceEEEEEECCceEEEEEEeehhhhccCcCCcCcchhHHHHHHHHHHHHHHHHHHcCC-CHHHCCEEEEecC
Confidence 48999999999999998655577665542211 1 1111 122344455556666666433 3567888888653
No 123
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=59.36 E-value=5.9 Score=37.89 Aligned_cols=23 Identities=43% Similarity=0.882 Sum_probs=20.4
Q ss_pred EEEEEeCccCceEEEEeCCCcEE
Q 037497 73 YLGMDFGTSGARFAIINKDGTIL 95 (333)
Q Consensus 73 ~lGIDiGTTsiKa~l~D~~G~il 95 (333)
|+|||=|||++|.++.+.+++..
T Consensus 1 ~vGiDHGTtgi~f~~~~~~~~~~ 23 (326)
T TIGR03281 1 FVGIDHGTTGIRFAIIDGEKEPV 23 (326)
T ss_pred CccccCCCccEEEEEecCCcceE
Confidence 58999999999999999888654
No 124
>PRK13322 pantothenate kinase; Reviewed
Probab=59.36 E-value=8.2 Score=35.71 Aligned_cols=24 Identities=29% Similarity=0.636 Sum_probs=20.0
Q ss_pred EEEEEeCccCceEEEEeCCCcEEE
Q 037497 73 YLGMDFGTSGARFAIINKDGTILS 96 (333)
Q Consensus 73 ~lGIDiGTTsiKa~l~D~~G~il~ 96 (333)
+|.||+|-|++|.+++|.+++++.
T Consensus 2 ~L~IDiGNT~iK~~l~~~~~~~~~ 25 (246)
T PRK13322 2 ILELDCGNSRLKWRVIDNGGQIIE 25 (246)
T ss_pred EEEEEeCCCcEEEEEEcCCCchhh
Confidence 689999999999999996455543
No 125
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=58.63 E-value=35 Score=28.97 Aligned_cols=23 Identities=43% Similarity=0.719 Sum_probs=17.9
Q ss_pred EEEEEeCccCceEEEEeCCCcEE
Q 037497 73 YLGMDFGTSGARFAIINKDGTIL 95 (333)
Q Consensus 73 ~lGIDiGTTsiKa~l~D~~G~il 95 (333)
+||||-|++++-.++++.+++.+
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~ 23 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKL 23 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEE
T ss_pred CEEECCCCCCeeEEEEEeeCCEE
Confidence 58999999999999999876443
No 126
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=57.45 E-value=9.9 Score=40.34 Aligned_cols=19 Identities=32% Similarity=0.555 Sum_probs=17.0
Q ss_pred eEEEEEeCccCceEEEEeC
Q 037497 72 LYLGMDFGTSGARFAIINK 90 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~ 90 (333)
.++|||+|||+.++++++.
T Consensus 42 ~viGIDlGTt~s~va~~~~ 60 (663)
T PTZ00400 42 DIVGIDLGTTNSCVAIMEG 60 (663)
T ss_pred cEEEEEECcccEEEEEEeC
Confidence 4899999999999999864
No 127
>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.
Probab=56.59 E-value=8.8 Score=41.70 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=20.4
Q ss_pred ceEEEEEeCccCceEEEEeCCCc
Q 037497 71 RLYLGMDFGTSGARFAIINKDGT 93 (333)
Q Consensus 71 ~~~lGIDiGTTsiKa~l~D~~G~ 93 (333)
+|+||+||||+||=-+|+|.+-+
T Consensus 1 ~y~LGLDiGt~SvGWAVv~~d~~ 23 (805)
T TIGR01865 1 EYILGLDIGIASVGWAIVEDDYK 23 (805)
T ss_pred CceeEEeecccceeEEEEecccc
Confidence 48999999999999999997754
No 128
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=56.02 E-value=27 Score=31.69 Aligned_cols=64 Identities=19% Similarity=0.232 Sum_probs=44.3
Q ss_pred eEEEEEeCccCceEEEEeC-CCcEEEEEEEeecCcCCccccccHHHHHHHHHHHHHhchhcCCCCccEEEEec
Q 037497 72 LYLGMDFGTSGARFAIINK-DGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVNLRPLIASISIDG 143 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~-~G~il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~ 143 (333)
.+|+||-.|..+-+++++. +++++.+.....+. .-.+.+...+.+++++... ...++.+|.++.
T Consensus 2 ~iLaiDTs~~~~s~ai~~~~~~~vl~~~~~~~~r-------~hse~l~~~i~~ll~~~~~-~~~dld~iav~~ 66 (220)
T COG1214 2 KILAIDTSTSALSVALYLADDGKVLAEHTEKLKR-------NHAERLMPMIDELLKEAGL-SLQDLDAIAVAK 66 (220)
T ss_pred cEEEEEcChhhhhhheeecCCCcEEEEEEEeccc-------cHHHHHHHHHHHHHHHcCC-CHHHCCEEEEcc
Confidence 4799999999999888886 67787776655531 2234556667777776643 345788887754
No 129
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=55.49 E-value=60 Score=27.69 Aligned_cols=30 Identities=17% Similarity=0.391 Sum_probs=19.3
Q ss_pred ceEEEEEeCcc----CceEEEEeCCCcEEEEEEE
Q 037497 71 RLYLGMDFGTS----GARFAIINKDGTILSEGKK 100 (333)
Q Consensus 71 ~~~lGIDiGTT----siKa~l~D~~G~il~~~~~ 100 (333)
..+|++-.|.. .+.++++|++|+++...+.
T Consensus 5 ~rVla~~~g~g~~~~~~~~v~ld~~G~v~d~~~~ 38 (150)
T PF14639_consen 5 PRVLALSWGSGDGDDAVFCVVLDENGEVLDHLKL 38 (150)
T ss_dssp --EEEEE-TT--TTS-EEEEEE-TTS-EEEEEEE
T ss_pred CEEEEEEcCCCCCCCCEEEEEECCCCcEEEEEEE
Confidence 34677777744 5899999999999987766
No 130
>PRK13328 pantothenate kinase; Reviewed
Probab=54.90 E-value=13 Score=34.49 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=20.3
Q ss_pred EEEEEeCccCceEEEEeCCCcEEE
Q 037497 73 YLGMDFGTSGARFAIINKDGTILS 96 (333)
Q Consensus 73 ~lGIDiGTTsiKa~l~D~~G~il~ 96 (333)
+|-||+|.|.+|-+++|.+++++.
T Consensus 3 ~LliDiGNTriKwa~~~~~~~~~~ 26 (255)
T PRK13328 3 ILLIDAGNSRIKWAWADAGRPWVH 26 (255)
T ss_pred EEEEEeCccceeEEEEcCCCceee
Confidence 788999999999999997656553
No 131
>PLN03184 chloroplast Hsp70; Provisional
Probab=54.42 E-value=12 Score=39.82 Aligned_cols=19 Identities=26% Similarity=0.525 Sum_probs=17.3
Q ss_pred eEEEEEeCccCceEEEEeC
Q 037497 72 LYLGMDFGTSGARFAIINK 90 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~ 90 (333)
.++|||+|||+.++++++.
T Consensus 40 ~viGIDlGTt~s~va~~~~ 58 (673)
T PLN03184 40 KVVGIDLGTTNSAVAAMEG 58 (673)
T ss_pred CEEEEEeCcCcEEEEEEEC
Confidence 5899999999999999974
No 132
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=54.33 E-value=13 Score=38.95 Aligned_cols=20 Identities=35% Similarity=0.708 Sum_probs=17.4
Q ss_pred ceEEEEEeCccCceEEEEeC
Q 037497 71 RLYLGMDFGTSGARFAIINK 90 (333)
Q Consensus 71 ~~~lGIDiGTTsiKa~l~D~ 90 (333)
..++|||+|||+..++++..
T Consensus 19 ~~viGIDlGTT~S~va~~~~ 38 (595)
T PRK01433 19 QIAVGIDFGTTNSLIAIATN 38 (595)
T ss_pred ceEEEEEcCcccEEEEEEeC
Confidence 46899999999999998853
No 133
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=54.16 E-value=71 Score=27.12 Aligned_cols=21 Identities=29% Similarity=0.721 Sum_probs=18.5
Q ss_pred EEEEEeCccCceEEEEeCCCc
Q 037497 73 YLGMDFGTSGARFAIINKDGT 93 (333)
Q Consensus 73 ~lGIDiGTTsiKa~l~D~~G~ 93 (333)
+||||-|++++=.++++.+++
T Consensus 2 ILGIDPGl~~~G~av~~~~~~ 22 (154)
T cd00529 2 ILGIDPGSRNTGYGVIEQEGR 22 (154)
T ss_pred EEEEccCcCceEEEEEEeeCC
Confidence 799999999999999996553
No 134
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=53.53 E-value=14 Score=35.98 Aligned_cols=75 Identities=12% Similarity=0.102 Sum_probs=45.3
Q ss_pred EEEEEeCccCceEEEEeCCCcEEEEEE---EeecCcCCcc----c-cccHHHHHHHHHHHHHhchhcCCCCccEEEEecC
Q 037497 73 YLGMDFGTSGARFAIINKDGTILSEGK---KEYPKFTTEE----S-IDWLRSWKVTLFSLLEAVPVNLRPLIASISIDGT 144 (333)
Q Consensus 73 ~lGIDiGTTsiKa~l~D~~G~il~~~~---~~~~~~~pg~----~-e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~~ 144 (333)
+|||.-.=.-+-++++|+.++++++.. ......+-|- + ++--+.+-..+++++.+... .++++.+|+|+.
T Consensus 34 VLgIETSCDDTavaVVd~~~~~~~~~i~~~t~~~~~yGGI~P~~a~~~Hr~ni~~~iqral~aa~~-~p~dldaIAVT~- 111 (405)
T KOG2707|consen 34 VLGIETSCDDTAVAVVDEFSHVLSSEIYSRTEIHRQYGGIIPTVAQLLHRENIPRLIQRALDAAGL-SPKDLDAIAVTR- 111 (405)
T ss_pred eeeEecccCcceeeeecccccccchhhhhhhHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHcCC-CcccceeEEEec-
Confidence 899988777888999999999887632 1111111121 1 12223344445666655443 577899999975
Q ss_pred CceEE
Q 037497 145 SATTI 149 (333)
Q Consensus 145 ~~s~v 149 (333)
++++.
T Consensus 112 gPGl~ 116 (405)
T KOG2707|consen 112 GPGLP 116 (405)
T ss_pred CCCce
Confidence 44443
No 135
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=53.34 E-value=10 Score=36.27 Aligned_cols=19 Identities=26% Similarity=0.546 Sum_probs=15.0
Q ss_pred EEEEeCccCceEEEEeCCCc
Q 037497 74 LGMDFGTSGARFAIINKDGT 93 (333)
Q Consensus 74 lGIDiGTTsiKa~l~D~~G~ 93 (333)
+|||+||+++++... .+|.
T Consensus 5 ~giDlGt~~s~i~~~-~~~~ 23 (333)
T TIGR00904 5 IGIDLGTANTLVYVK-GRGI 23 (333)
T ss_pred eEEecCcceEEEEEC-CCCE
Confidence 899999999998763 3444
No 136
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=52.20 E-value=31 Score=28.79 Aligned_cols=65 Identities=22% Similarity=0.237 Sum_probs=39.8
Q ss_pred eEEEEEeCccCceEEEEeCCCcEEEEEEEeecCcCCccccccHHHHHHHHHHHHHhchhcCCCCccEEEEecCCceEEEE
Q 037497 72 LYLGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVNLRPLIASISIDGTSATTIII 151 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~~~~s~v~v 151 (333)
.+||||+|+..+=+++-|..+.+ +. |++... ..+.+..++.+.+++++- +|..|-|+- |+
T Consensus 2 riL~lD~G~kriGiAvsd~~~~~-a~---pl~~i~----~~~~~~~~~~l~~li~~~------~i~~iVvGl------P~ 61 (135)
T PF03652_consen 2 RILGLDYGTKRIGIAVSDPLGII-AS---PLETIP----RRNREKDIEELKKLIEEY------QIDGIVVGL------PL 61 (135)
T ss_dssp EEEEEEECSSEEEEEEEETTTSS-EE---EEEEEE----ECCCCCCHHHHHHHHHHC------CECEEEEEE------EB
T ss_pred eEEEEEeCCCeEEEEEecCCCCe-Ee---eeEEEE----CCCCchHHHHHHHHHHHh------CCCEEEEeC------Cc
Confidence 58999999999999999987754 22 222110 111133455566666653 466666654 45
Q ss_pred eCCCCc
Q 037497 152 DSNSGE 157 (333)
Q Consensus 152 D~~~G~ 157 (333)
+. +|.
T Consensus 62 ~~-~G~ 66 (135)
T PF03652_consen 62 NM-DGS 66 (135)
T ss_dssp BC-TSS
T ss_pred cc-CCC
Confidence 55 664
No 137
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=51.74 E-value=11 Score=39.33 Aligned_cols=18 Identities=28% Similarity=0.547 Sum_probs=16.3
Q ss_pred EEEEEeCccCceEEEEeC
Q 037497 73 YLGMDFGTSGARFAIINK 90 (333)
Q Consensus 73 ~lGIDiGTTsiKa~l~D~ 90 (333)
++|||+|||+..+++++.
T Consensus 1 ~iGIDlGTtns~va~~~~ 18 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRS 18 (599)
T ss_pred CEEEEEccccEEEEEEEC
Confidence 489999999999999985
No 138
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=49.59 E-value=54 Score=27.80 Aligned_cols=60 Identities=13% Similarity=0.139 Sum_probs=36.7
Q ss_pred ceEEEEEeCccCceEEEEeCCCcEEEEEEEeecCcCCccccccHH-HHHHHHHHHHHhchhcCCCCccEEEEecC
Q 037497 71 RLYLGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLR-SWKVTLFSLLEAVPVNLRPLIASISIDGT 144 (333)
Q Consensus 71 ~~~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~pg~~e~d~~-~~~~~i~~~l~~l~~~~~~~I~aIgis~~ 144 (333)
+.+||+|+|+-.|=+++-|..+.+ + .|.+.. ..++-. .-|+.+.+++++- ++..|-|+-+
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~~~~-A---~pl~~i----~~~~~~~~~~~~l~~li~~~------~~~~vVVGlP 62 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDILGSL-A---SPLETI----KRKNGKPQDFNALLKLVKEY------QVDTVVVGLP 62 (141)
T ss_pred ceEEEEecCCceEEEEEecCCCcc-c---cchhhh----eeccccHhhHHHHHHHHHHh------CCCEEEEecC
Confidence 368999999999999999887632 2 233322 122222 3566666666654 4556666543
No 139
>COG2183 Tex Transcriptional accessory protein [Transcription]
Probab=49.09 E-value=31 Score=37.10 Aligned_cols=68 Identities=21% Similarity=0.326 Sum_probs=41.1
Q ss_pred cCCceEEEEEeCcc-CceEEEEeCCCcEEEEEEEeecCcCCccccccHHHHHHHHHHHHHhchhcCCCCccEEEEecC
Q 037497 68 VGERLYLGMDFGTS-GARFAIINKDGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVNLRPLIASISIDGT 144 (333)
Q Consensus 68 M~~~~~lGIDiGTT-siKa~l~D~~G~il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~~ 144 (333)
+..+.++|+|=|.- ++|.+++|..|+.+....+ ||.. ...+ ++...+.+..+++.. .-++.+||.++.
T Consensus 327 ~~~~~~lglDPg~rtG~k~Avvd~tGk~l~~~~I-yp~~---p~~~-~~~~~~~l~~l~~~~----~Ve~iaIGngTa 395 (780)
T COG2183 327 AKPKATLGLDPGFRTGCKVAVVDDTGKLLDTATI-YPHP---PVNQ-SDKAEATLKDLIRKY----KVELIAIGNGTA 395 (780)
T ss_pred CCCcceeecCCccccccEEEEEcCCCceeceeEE-EcCC---Cccc-hHHHHHHHHHHHHHh----CceEEEEecCCc
Confidence 33457899999974 4999999999999976543 3311 1111 333333344444322 335777777764
No 140
>PRK14878 UGMP family protein; Provisional
Probab=49.08 E-value=44 Score=32.11 Aligned_cols=68 Identities=13% Similarity=0.128 Sum_probs=41.6
Q ss_pred EEEEeCccCceEEEEeCCCcEEEEEEEeecCcCCccc-----cccHHHHHHHHHHHHHhchhcCCCCccEEEEec
Q 037497 74 LGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEES-----IDWLRSWKVTLFSLLEAVPVNLRPLIASISIDG 143 (333)
Q Consensus 74 lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~pg~~-----e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~ 143 (333)
||||--+.-+-++|+| ++++++.....+...+-|.. .+..+.+...+.+++++... ...+|.+|+++.
T Consensus 1 l~iets~~~~s~al~~-~~~i~~~~~~~~~~~~gg~~p~~~~~~h~~~l~~~i~~~l~~a~~-~~~did~Iavt~ 73 (323)
T PRK14878 1 LGIESTAHTLGVGIVK-EDKVLANVRDTYVPEKGGIHPREAAQHHAEVAPELLRKALEKAGI-SIEDIDAVAVSQ 73 (323)
T ss_pred CEEecCCcccEEEEEE-CCEEEEEEEEecccCcCCcCccHHHHHHHHHHHHHHHHHHHHcCC-CHHHCCEEEEec
Confidence 5788877788889998 45577666543322111211 12234455566777776543 456899999975
No 141
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=47.60 E-value=13 Score=35.77 Aligned_cols=15 Identities=27% Similarity=0.578 Sum_probs=13.3
Q ss_pred EEEEeCccCceEEEE
Q 037497 74 LGMDFGTSGARFAII 88 (333)
Q Consensus 74 lGIDiGTTsiKa~l~ 88 (333)
+|||+||+++++...
T Consensus 6 ~gIDlGt~~~~i~~~ 20 (336)
T PRK13928 6 IGIDLGTANVLVYVK 20 (336)
T ss_pred eEEEcccccEEEEEC
Confidence 899999999998764
No 142
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=46.09 E-value=62 Score=30.58 Aligned_cols=48 Identities=15% Similarity=0.171 Sum_probs=34.0
Q ss_pred eEEEEEeCccCceEEEEeCCCcEEEEEEEeecCcCCccccccHHHHHHHHHHHHHh
Q 037497 72 LYLGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEA 127 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~ 127 (333)
-.|.||+|+..+-++++|++ ++.+.-.+-+ ...+++.+-+.|.+....
T Consensus 228 palvVd~GngHttaalvded-RI~gv~EHHT-------~~Lspekled~I~rf~~G 275 (342)
T COG4012 228 PALVVDYGNGHTTAALVDED-RIVGVYEHHT-------IRLSPEKLEDQIIRFVEG 275 (342)
T ss_pred ceEEEEccCCceEEEEecCC-eEEEEeeccc-------ccCCHHHHHHHHHHHHhc
Confidence 46889999999999999987 7776543322 235667766666665543
No 143
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=45.98 E-value=28 Score=33.10 Aligned_cols=62 Identities=18% Similarity=0.150 Sum_probs=42.4
Q ss_pred EEEEeCccCceEEEEe-CCCcEEEEEEEeecCcCCccccccHHHHHHHHHHHHHhchhcCCCCccEE-EEecCC
Q 037497 74 LGMDFGTSGARFAIIN-KDGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVNLRPLIASI-SIDGTS 145 (333)
Q Consensus 74 lGIDiGTTsiKa~l~D-~~G~il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~~~~~~I~aI-gis~~~ 145 (333)
+|||-||.+.-+.-|| +.|+++-....+.. .++.+|.-+.+.+.+.-.+.. .|.+| |.++.+
T Consensus 1 ~GIDpGT~smdvfgfdDEsg~vi~~~~I~rd-----eVtk~p~iiv~ii~e~~~e~g-----~~daivgpSGyG 64 (374)
T COG2441 1 IGIDPGTGSMDVFGFDDESGNVIVDVAIPRD-----EVTKSPRIIVDIIEEVQAEVG-----GIDAIVGPSGYG 64 (374)
T ss_pred CCcCCCCCceeEEEEecCCCCEEEEEecCHH-----HhccCchHHHHHHHHHhhhhc-----cccceeccccCC
Confidence 4899999999888777 46999987766653 366778777766665544432 35554 555555
No 144
>PRK07157 acetate kinase; Provisional
Probab=44.43 E-value=34 Score=34.05 Aligned_cols=26 Identities=19% Similarity=0.512 Sum_probs=21.3
Q ss_pred EEEEEeCccCceEEEEeCC-CcEEEEE
Q 037497 73 YLGMDFGTSGARFAIINKD-GTILSEG 98 (333)
Q Consensus 73 ~lGIDiGTTsiKa~l~D~~-G~il~~~ 98 (333)
+|.|..|++|+|..|||.+ .+++...
T Consensus 5 iLvlN~GSSSlKf~lf~~~~~~~l~~G 31 (400)
T PRK07157 5 ILVINAGSSSIKWQLFDKENLNLIASG 31 (400)
T ss_pred EEEEECChHhheeEEEECCCCcEEEEE
Confidence 8999999999999999964 4555544
No 145
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=44.23 E-value=29 Score=34.65 Aligned_cols=61 Identities=15% Similarity=0.117 Sum_probs=41.9
Q ss_pred CceEEEEEeCccCceEEEEeCCCc----EEEEEEEeecCcCCcc--ccccHHHHHHHHHHHHHhchh
Q 037497 70 ERLYLGMDFGTSGARFAIINKDGT----ILSEGKKEYPKFTTEE--SIDWLRSWKVTLFSLLEAVPV 130 (333)
Q Consensus 70 ~~~~lGIDiGTTsiKa~l~D~~G~----il~~~~~~~~~~~pg~--~e~d~~~~~~~i~~~l~~l~~ 130 (333)
+.|.+-||.|+|+.|+-+|--+-. ...-...-+....||- ...||++-.+.++.+++.+.+
T Consensus 66 ~~Y~iiiDAGSTGsRvHvY~F~~~~~~~~p~le~E~F~~~kPGLSsfaddp~~aA~Sl~~LLd~A~~ 132 (453)
T KOG1385|consen 66 RQYAIIIDAGSTGTRVHVYKFDQCLPGMPPELEHELFKEVKPGLSSFADDPEEAANSLRPLLDVAEA 132 (453)
T ss_pred eEEEEEEecCCCcceEEEEEeccCCCCCCchhHHHHHhhcCCcccccCCChHHHHHhHHHHHHHHHh
Confidence 469999999999999999975433 2111112223334654 468889988888888887755
No 146
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=41.54 E-value=43 Score=33.41 Aligned_cols=27 Identities=30% Similarity=0.486 Sum_probs=21.6
Q ss_pred eEEEEEeCccCceEEEEeCC--CcEEEEE
Q 037497 72 LYLGMDFGTSGARFAIINKD--GTILSEG 98 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~~--G~il~~~ 98 (333)
.+|.|..|++|+|..|||.+ .+++...
T Consensus 5 ~iLvlN~GSSSlKf~lf~~~~~~~~l~~G 33 (404)
T TIGR00016 5 KILVINAGSSSLKFALFDYTNGETVLLSG 33 (404)
T ss_pred eEEEEECChHhheEEEEecCCCCceEEEE
Confidence 48999999999999999964 3555543
No 147
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=40.31 E-value=84 Score=29.36 Aligned_cols=48 Identities=17% Similarity=0.118 Sum_probs=35.2
Q ss_pred ceEEEEEeCccCceEEEEeCCCcEEEEEEEeecCcCCccccccHHHHHHHHHHHHH
Q 037497 71 RLYLGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLE 126 (333)
Q Consensus 71 ~~~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~ 126 (333)
.=+++||+|.+.+-++++ .++++.....+-+ ...+++.+++-+.++.+
T Consensus 167 ~~~~~vniGN~HTlaa~v-~~~rI~GvfEHHT-------~~l~~~kL~~~l~~l~~ 214 (254)
T PF08735_consen 167 EGIIVVNIGNGHTLAALV-KDGRIYGVFEHHT-------GMLTPEKLEEYLERLRD 214 (254)
T ss_pred CCeEEEEeCCccEEEEEE-eCCEEEEEEeccc-------CCCCHHHHHHHHHHHHc
Confidence 347899999999999999 6788876544333 45677777777666554
No 148
>PRK13325 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase; Reviewed
Probab=40.19 E-value=39 Score=35.48 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=19.5
Q ss_pred eEEEEEeCccCceEEEEeCCCcEEE
Q 037497 72 LYLGMDFGTSGARFAIINKDGTILS 96 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~~G~il~ 96 (333)
.+|-||+|.|.+|.++++. ++++.
T Consensus 339 ~~LliD~GNTriKwa~~~~-~~~~~ 362 (592)
T PRK13325 339 RFLLLDGGNSRLKWAWVEN-GTFAT 362 (592)
T ss_pred eEEEEEcCcCceeEEEEcC-Cceee
Confidence 4788999999999999984 45553
No 149
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=39.44 E-value=1.9e+02 Score=27.25 Aligned_cols=70 Identities=17% Similarity=0.129 Sum_probs=38.9
Q ss_pred CceEEEEEeCccCceEE-EEeCCCcEEEEEEEeecCc---CCccccccHHHHHHHHHHHHHhchhcCCCCccEEEEecCC
Q 037497 70 ERLYLGMDFGTSGARFA-IINKDGTILSEGKKEYPKF---TTEESIDWLRSWKVTLFSLLEAVPVNLRPLIASISIDGTS 145 (333)
Q Consensus 70 ~~~~lGIDiGTTsiKa~-l~D~~G~il~~~~~~~~~~---~pg~~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~~~ 145 (333)
..+.++||+.|. +... .++.+++.+. .+|.. ..|..--..+++.+.+.++-+++ ..+.-||.+
T Consensus 175 Ggi~~~ID~~tG-l~~~~~~~~~~~~~~----~HPdTg~~~~g~~IP~w~~~~~l~~~~~~~~-----p~~~~iGWD--- 241 (285)
T PF14397_consen 175 GGIGVGIDLATG-LGRFAGYDQDGERYE----HHPDTGAPFSGFQIPNWDEILELAKEAHRKF-----PGLGYIGWD--- 241 (285)
T ss_pred CCEEEEEecCCC-ccccccccCCCCEee----eCCCCCCccCCccCCCHHHHHHHHHHHHHHC-----CCCCeEEEE---
Confidence 458899999988 6555 5777776652 22211 11222233344444443333333 357778877
Q ss_pred ceEEEEeCCCC
Q 037497 146 ATTIIIDSNSG 156 (333)
Q Consensus 146 ~s~v~vD~~~G 156 (333)
+.+|+ +|
T Consensus 242 ---vait~-~G 248 (285)
T PF14397_consen 242 ---VAITE-DG 248 (285)
T ss_pred ---EEEcC-CC
Confidence 46777 77
No 150
>PRK12397 propionate kinase; Reviewed
Probab=39.25 E-value=46 Score=33.18 Aligned_cols=30 Identities=20% Similarity=0.577 Sum_probs=23.3
Q ss_pred cCCceEEEEEeCccCceEEEEeCC-CcEEEEE
Q 037497 68 VGERLYLGMDFGTSGARFAIINKD-GTILSEG 98 (333)
Q Consensus 68 M~~~~~lGIDiGTTsiKa~l~D~~-G~il~~~ 98 (333)
|+++ +|.|..|++|+|..|||.+ .+++...
T Consensus 1 ~~~~-iLvlN~GSSSlKf~lf~~~~~~~l~~G 31 (404)
T PRK12397 1 MSYK-IMAINAGSSSLKFQLLEMPQGDMLCQG 31 (404)
T ss_pred CCCc-EEEEECChHhheEEEEECCCCceEEEE
Confidence 4444 8999999999999999964 4555544
No 151
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=37.88 E-value=1.1e+02 Score=26.46 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=19.1
Q ss_pred EEEEEeCccCceEEEEeCCCcE
Q 037497 73 YLGMDFGTSGARFAIINKDGTI 94 (333)
Q Consensus 73 ~lGIDiGTTsiKa~l~D~~G~i 94 (333)
+||||=|+..+=-++++.+++.
T Consensus 1 ILGIDPGl~~tG~gvi~~~~~~ 22 (156)
T TIGR00228 1 ILGIDPGSRVTGYGVIRQVGRQ 22 (156)
T ss_pred CEeECcccccccEEEEEecCCe
Confidence 4899999999999999976654
No 152
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=37.47 E-value=47 Score=27.51 Aligned_cols=56 Identities=21% Similarity=0.146 Sum_probs=33.8
Q ss_pred EEEEeCccCceEEEEeCCCcEEEEEEEeecCcCCccccccHHHHHHHHHHHHHhchhcCCCCccEEEEec
Q 037497 74 LGMDFGTSGARFAIINKDGTILSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEAVPVNLRPLIASISIDG 143 (333)
Q Consensus 74 lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~ 143 (333)
||||+|+..+=.++-|..+.+. + |.... ...+....++.+.+.+++- ++..|-|+-
T Consensus 1 laiD~G~kriGvA~~d~~~~~a-~---pl~~i----~~~~~~~~~~~l~~~i~~~------~~~~iVvGl 56 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDITGWTA-Q---GIPTI----KAQDGEPDWSRIEELLKEW------TPDKIVVGL 56 (130)
T ss_pred CeEccCCCeEEEEEECCCCCEE-e---ceEEE----EecCCcHHHHHHHHHHHHc------CCCEEEEec
Confidence 6899999999999988877542 2 22211 1122234466666666653 356666654
No 153
>PRK13329 pantothenate kinase; Reviewed
Probab=36.17 E-value=31 Score=31.97 Aligned_cols=18 Identities=17% Similarity=0.630 Sum_probs=16.5
Q ss_pred EEEEEeCccCceEEEEeC
Q 037497 73 YLGMDFGTSGARFAIINK 90 (333)
Q Consensus 73 ~lGIDiGTTsiKa~l~D~ 90 (333)
+|-||+|.|.+|.+++|.
T Consensus 3 ~LliD~GNTriKw~~~~~ 20 (249)
T PRK13329 3 FLAIDVGNTRLKWGLYDA 20 (249)
T ss_pred EEEEEcCcchheeeEecc
Confidence 678999999999999994
No 154
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=35.15 E-value=25 Score=33.38 Aligned_cols=15 Identities=27% Similarity=0.589 Sum_probs=13.6
Q ss_pred EEEEeCccCceEEEE
Q 037497 74 LGMDFGTSGARFAII 88 (333)
Q Consensus 74 lGIDiGTTsiKa~l~ 88 (333)
+|||+||+++|+...
T Consensus 11 vgiDlGt~~t~i~~~ 25 (335)
T PRK13930 11 IGIDLGTANTLVYVK 25 (335)
T ss_pred eEEEcCCCcEEEEEC
Confidence 999999999999864
No 155
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=34.29 E-value=38 Score=32.51 Aligned_cols=13 Identities=31% Similarity=0.606 Sum_probs=11.4
Q ss_pred EEEEEeCccCceE
Q 037497 73 YLGMDFGTSGARF 85 (333)
Q Consensus 73 ~lGIDiGTTsiKa 85 (333)
.+|||+||+++++
T Consensus 6 ~~giDlGt~~~~i 18 (335)
T PRK13929 6 EIGIDLGTANILV 18 (335)
T ss_pred eEEEEcccccEEE
Confidence 4899999999974
No 156
>COG3513 Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]
Probab=33.53 E-value=36 Score=36.84 Aligned_cols=24 Identities=25% Similarity=0.614 Sum_probs=19.7
Q ss_pred cCCceEEEEEeCccCceEEEEeCC
Q 037497 68 VGERLYLGMDFGTSGARFAIINKD 91 (333)
Q Consensus 68 M~~~~~lGIDiGTTsiKa~l~D~~ 91 (333)
|.++|+||+|||+.|+-=+++..+
T Consensus 1 ~~~~yilglDIGi~SVGWAvve~d 24 (1088)
T COG3513 1 MKKAYILGLDIGINSVGWAVVEDD 24 (1088)
T ss_pred CCcceEEEeeccccceeeEEeecc
Confidence 446799999999999987777644
No 157
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=32.72 E-value=96 Score=31.63 Aligned_cols=33 Identities=3% Similarity=-0.285 Sum_probs=19.3
Q ss_pred CceEEEcCcchHHhhhhhcceeeeecCeEEEEE
Q 037497 286 FHLTCHWWKPTEHQTIVFLCICIVINNKFSQIS 318 (333)
Q Consensus 286 g~pV~~G~~D~~aa~~g~g~~~~~i~g~~~~is 318 (333)
+.+|.....-.-|..+|+|+..-.++|...++.
T Consensus 299 ~~~v~~p~eTiRATViGAG~htt~iSGSTI~~~ 331 (475)
T PRK10719 299 EMNVQFPAETVRATVIGAGAHTTELSGSTIWLE 331 (475)
T ss_pred cCcEeCCCCcceeEEEecCcceeEEEeeeEEec
Confidence 555665555556666666666555666554443
No 158
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=32.42 E-value=24 Score=34.09 Aligned_cols=35 Identities=17% Similarity=-0.117 Sum_probs=24.2
Q ss_pred ccccccCHHHHHHhCCCCCceEEEcCcchHHhhhhhcce
Q 037497 268 TSIGYLKEGIRTEFGMFLFHLTCHWWKPTEHQTIVFLCI 306 (333)
Q Consensus 268 ~~iG~l~~~~A~~~GL~~g~pV~~G~~D~~aa~~g~g~~ 306 (333)
..+-.+...+++++| +||........|.+.|++.+
T Consensus 284 a~l~Gl~~~i~~~~~----~pV~va~~P~~~va~G~~~~ 318 (326)
T PF06723_consen 284 ALLRGLDEYISEETG----VPVRVADDPLTAVARGAGKL 318 (326)
T ss_dssp GGSBTHHHHHHHHHS----S-EEE-SSTTTHHHHHHHHT
T ss_pred hhhccHHHHHHHHHC----CCEEEcCCHHHHHHHHHHHH
Confidence 334456778888886 67888888888888887754
No 159
>PRK12379 propionate/acetate kinase; Provisional
Probab=31.94 E-value=79 Score=31.50 Aligned_cols=29 Identities=21% Similarity=0.479 Sum_probs=23.4
Q ss_pred ceEEEEEeCccCceEEEEeCC-CcEEEEEE
Q 037497 71 RLYLGMDFGTSGARFAIINKD-GTILSEGK 99 (333)
Q Consensus 71 ~~~lGIDiGTTsiKa~l~D~~-G~il~~~~ 99 (333)
+++|.|..|++|+|..|||.+ .+++....
T Consensus 5 ~~iLvlN~GSSSlK~~l~~~~~~~~l~~G~ 34 (396)
T PRK12379 5 PVVLVINCGSSSIKFSVLDASDCEVLMSGI 34 (396)
T ss_pred CEEEEEECChHhheEEEEECCCCceEEEEE
Confidence 589999999999999999964 45555443
No 160
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.17 E-value=2.9e+02 Score=26.59 Aligned_cols=81 Identities=14% Similarity=0.166 Sum_probs=54.1
Q ss_pred ccCceEEEEeCCCcEEEEEEEeec-CcC--------Ccc---ccccHHHHHHHHHHHHHhchhcCCCCccEEEEecC-Cc
Q 037497 80 TSGARFAIINKDGTILSEGKKEYP-KFT--------TEE---SIDWLRSWKVTLFSLLEAVPVNLRPLIASISIDGT-SA 146 (333)
Q Consensus 80 TTsiKa~l~D~~G~il~~~~~~~~-~~~--------pg~---~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~~-~~ 146 (333)
--|+|-.-.|.+|++..--+..=+ ..+ +|. ..+-+++.|.++..-+..+.. ..+-.-|+++++ +.
T Consensus 225 ~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~--n~~~glV~lTSP~GN 302 (366)
T COG3490 225 QLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAA--NRRDGLVALTSPRGN 302 (366)
T ss_pred hcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheee--cccCCeEEEecCCCC
Confidence 346777777888888764432211 111 121 234578888888888888765 344567889888 78
Q ss_pred eEEEEeCCCCccccCC
Q 037497 147 TTIIIDSNSGEPLWRP 162 (333)
Q Consensus 147 s~v~vD~~~G~pl~p~ 162 (333)
.++.||+++|.++..+
T Consensus 303 ~~vi~da~tG~vv~~a 318 (366)
T COG3490 303 RAVIWDAATGAVVSEA 318 (366)
T ss_pred eEEEEEcCCCcEEecc
Confidence 8899999999877543
No 161
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=31.03 E-value=56 Score=31.17 Aligned_cols=25 Identities=12% Similarity=0.258 Sum_probs=21.3
Q ss_pred eEEEEEeCccCceEEEEeCCCcEEE
Q 037497 72 LYLGMDFGTSGARFAIINKDGTILS 96 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~~G~il~ 96 (333)
.--.||||++-.|+..+|++|++..
T Consensus 126 v~tIIDIGGQDsK~I~~d~~G~v~d 150 (293)
T TIGR03192 126 VRTILDMGGQDCKAIHCDEKGKVTN 150 (293)
T ss_pred CCEEEEeCCCceEEEEEcCCCcEee
Confidence 3456999999999999999998753
No 162
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=30.84 E-value=31 Score=32.86 Aligned_cols=15 Identities=33% Similarity=0.600 Sum_probs=13.0
Q ss_pred EEEEEeCccCceEEE
Q 037497 73 YLGMDFGTSGARFAI 87 (333)
Q Consensus 73 ~lGIDiGTTsiKa~l 87 (333)
.+|||+||+++|+..
T Consensus 7 ~igIDlGt~~~~i~~ 21 (334)
T PRK13927 7 DLGIDLGTANTLVYV 21 (334)
T ss_pred eeEEEcCcceEEEEE
Confidence 489999999999854
No 163
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=29.92 E-value=63 Score=30.31 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=20.3
Q ss_pred EEEEeCccCceEEEEeCCCcEEE
Q 037497 74 LGMDFGTSGARFAIINKDGTILS 96 (333)
Q Consensus 74 lGIDiGTTsiKa~l~D~~G~il~ 96 (333)
-.||||++-.|+..+|++|++..
T Consensus 100 tIiDIGGQD~K~I~~~~~G~v~~ 122 (262)
T TIGR02261 100 AVLDIGALHGRAIRMDERGKVEA 122 (262)
T ss_pred EEEEeCCCceEEEEEcCCCcEee
Confidence 56999999999999999998853
No 164
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=29.61 E-value=1.2e+02 Score=30.97 Aligned_cols=41 Identities=5% Similarity=-0.228 Sum_probs=28.9
Q ss_pred CCCceEEEcCcchHHhhhhhcceeeeecCeEEEEEecCCccc
Q 037497 284 FLFHLTCHWWKPTEHQTIVFLCICIVINNKFSQISCSSDCRT 325 (333)
Q Consensus 284 ~~g~pV~~G~~D~~aa~~g~g~~~~~i~g~~~~is~~s~~~~ 325 (333)
....+|.....-.-|..+|+|+..-.++|..-.++ ....+.
T Consensus 295 ~~~~~~~~p~ETiRATViGAG~~Tt~iSGSTI~~~-~~~LPl 335 (473)
T PF06277_consen 295 LASFKVLQPAETIRATVIGAGSHTTEISGSTITYT-EDILPL 335 (473)
T ss_pred hhcCceecCCCcceEEEEcccceEEEEeeeeEEec-CCcCcc
Confidence 34678888888888888888888777777666554 334443
No 165
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=29.31 E-value=1e+02 Score=26.19 Aligned_cols=25 Identities=24% Similarity=0.546 Sum_probs=21.6
Q ss_pred eEEEEEeCccCceEEEEeCCCcEEE
Q 037497 72 LYLGMDFGTSGARFAIINKDGTILS 96 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~~G~il~ 96 (333)
.+++||+|+-|.-.++++.+++.+.
T Consensus 2 ii~sIDiGikNlA~~iie~~~~~i~ 26 (143)
T PF04848_consen 2 IILSIDIGIKNLAYCIIEFEGNKIR 26 (143)
T ss_pred eEEEEecCCCceeEEEEEcCCCeEE
Confidence 5899999999999999998776554
No 166
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=26.59 E-value=2.3e+02 Score=28.90 Aligned_cols=31 Identities=13% Similarity=-0.019 Sum_probs=25.0
Q ss_pred EEEEEeCccCceEEEEeCCCcEEEEEEEeecC
Q 037497 73 YLGMDFGTSGARFAIINKDGTILSEGKKEYPK 104 (333)
Q Consensus 73 ~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~ 104 (333)
.+.||||+.|+-.++++ +++++...+.+...
T Consensus 134 ~lviDIGGGStEl~~~~-~~~~~~~~Sl~lG~ 164 (496)
T PRK11031 134 RLVVDIGGASTELVTGT-GAQATSLFSLSMGC 164 (496)
T ss_pred EEEEEecCCeeeEEEec-CCceeeeeEEeccc
Confidence 68899999999999987 56777777776643
No 167
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=25.23 E-value=72 Score=30.11 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=17.1
Q ss_pred eEEEEEeCccCceEEEEeCCCcEE
Q 037497 72 LYLGMDFGTSGARFAIINKDGTIL 95 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~~G~il 95 (333)
-.|.+|+|+|++.++++. +|++.
T Consensus 78 ~~i~vDmGGTTtDi~~i~-~G~p~ 100 (290)
T PF01968_consen 78 NAIVVDMGGTTTDIALIK-DGRPE 100 (290)
T ss_dssp SEEEEEE-SS-EEEEEEE-TTEE-
T ss_pred CEEEEeCCCCEEEEEEEE-CCeee
Confidence 378999999999999995 78654
No 168
>PF12864 DUF3822: Protein of unknown function (DUF3822); InterPro: IPR024213 This is a family of uncharacterised bacterial proteins. However, structural-similarity searches indicate the family takes on an actin-like ATPase fold.; PDB: 3HRG_A.
Probab=25.02 E-value=3.6e+02 Score=24.63 Aligned_cols=75 Identities=13% Similarity=0.038 Sum_probs=39.4
Q ss_pred CceEEEEEeCccCceEEEEeCCCcE-EEEEEEeecCcCCccccccHHHHHHHHHHHHHh--chhcCCCCccEEEEecCCc
Q 037497 70 ERLYLGMDFGTSGARFAIINKDGTI-LSEGKKEYPKFTTEESIDWLRSWKVTLFSLLEA--VPVNLRPLIASISIDGTSA 146 (333)
Q Consensus 70 ~~~~lGIDiGTTsiKa~l~D~~G~i-l~~~~~~~~~~~pg~~e~d~~~~~~~i~~~l~~--l~~~~~~~I~aIgis~~~~ 146 (333)
..+.|.|-+|..+...+++|..++. +........ .+.++..+.+.+.+++++ +.. .+-+=.-|.+.++.-
T Consensus 17 ~~~~LsI~i~~~glsf~i~d~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~L~-~~~~~v~v~~~~~~~ 89 (253)
T PF12864_consen 17 EQYKLSIRISLDGLSFCIYDPESKEILALESYSFD------TELTPISLLANLKEAFKEHELLQ-QPYKEVRVLHDSPLF 89 (253)
T ss_dssp GGSEEEEEE-TT-EEEEEEETTTTEEEEEEEE------------TTS-HHHHHHHHHHH-GGGG-S--SEEEEEE--S-E
T ss_pred cCceEEEEEcCCcEEEEEEcCCCCcEEEEEEEEec------ccCChhHHHHHHHHHHhhhHHhh-CCCcEEEEEEcCCce
Confidence 4588999999999999999976654 443333332 122555667777777774 333 222223445555555
Q ss_pred eEEEE
Q 037497 147 TTIII 151 (333)
Q Consensus 147 s~v~v 151 (333)
++||.
T Consensus 90 tlVP~ 94 (253)
T PF12864_consen 90 TLVPN 94 (253)
T ss_dssp EEEEG
T ss_pred EEeCh
Confidence 55554
No 169
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=24.84 E-value=78 Score=30.56 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=19.7
Q ss_pred EEEEEeCccCceEEEEeCCCcEEEE
Q 037497 73 YLGMDFGTSGARFAIINKDGTILSE 97 (333)
Q Consensus 73 ~lGIDiGTTsiKa~l~D~~G~il~~ 97 (333)
.|.+|+|+|+++++++. +|++...
T Consensus 130 ~I~~DmGGTTtDi~~i~-~G~p~~~ 153 (318)
T TIGR03123 130 CLFVDMGSTTTDIIPII-DGEVAAK 153 (318)
T ss_pred EEEEEcCccceeeEEec-CCEeeee
Confidence 78999999999999984 5766554
No 170
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=22.63 E-value=2.1e+02 Score=27.94 Aligned_cols=75 Identities=15% Similarity=0.136 Sum_probs=42.3
Q ss_pred eEEEEEeCccCceEEEEeCCCcEEEEEEEeecCcCC---cc-----ccccHHHHHHHHHHHHHhchhcCCCCccEEEEec
Q 037497 72 LYLGMDFGTSGARFAIINKDGTILSEGKKEYPKFTT---EE-----SIDWLRSWKVTLFSLLEAVPVNLRPLIASISIDG 143 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l~D~~G~il~~~~~~~~~~~p---g~-----~e~d~~~~~~~i~~~l~~l~~~~~~~I~aIgis~ 143 (333)
.+|||.-.-.-+-+++++.++ +++.....+-..++ |- ..+-.+.+-..++++++++.. ...+|.+|+++.
T Consensus 2 ~iLGIEtScDeT~vaIv~~~~-ilan~~~sq~~~h~~~GGVvPe~Asr~H~e~i~~li~~al~eA~~-~~~dID~IA~T~ 79 (342)
T COG0533 2 IILGIETSCDETGVAIVDEEK-ILANVVASQIELHARYGGVVPELASRHHVENIPPLIEEALAEAGV-SLEDIDAIAVTA 79 (342)
T ss_pred eEEEEEcccccceeEEEeccC-hhheehhhcccccCCCCCcCccHHHHHHHHHHHHHHHHHHHHcCC-CcccCCEEEEec
Confidence 467777666677788888776 66544322221111 21 122234444445555555544 457899999975
Q ss_pred CCceEE
Q 037497 144 TSATTI 149 (333)
Q Consensus 144 ~~~s~v 149 (333)
+++++
T Consensus 80 -gPGL~ 84 (342)
T COG0533 80 -GPGLG 84 (342)
T ss_pred -CCCch
Confidence 45543
No 171
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=21.09 E-value=93 Score=25.06 Aligned_cols=24 Identities=21% Similarity=0.499 Sum_probs=19.7
Q ss_pred CccCceEEEEeCCCcEEEEEEEee
Q 037497 79 GTSGARFAIINKDGTILSEGKKEY 102 (333)
Q Consensus 79 GTTsiKa~l~D~~G~il~~~~~~~ 102 (333)
.-|++|+-|||.+|++|+.+..-+
T Consensus 15 ~Pt~~RARlyd~dG~Ll~DSr~l~ 38 (112)
T PF13756_consen 15 SPTRTRARLYDPDGNLLADSRVLY 38 (112)
T ss_pred CCCCceEEEECCCCCEEeeccccc
Confidence 356999999999999998666555
No 172
>KOG1386 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=20.87 E-value=3.7e+02 Score=27.57 Aligned_cols=63 Identities=21% Similarity=0.139 Sum_probs=42.3
Q ss_pred cCCceEEEEEeCccCceEEEEe---CCCcE-EEEEEEeecC--cCCcc--ccccHHHHHHHHHHHHHhchh
Q 037497 68 VGERLYLGMDFGTSGARFAIIN---KDGTI-LSEGKKEYPK--FTTEE--SIDWLRSWKVTLFSLLEAVPV 130 (333)
Q Consensus 68 M~~~~~lGIDiGTTsiKa~l~D---~~G~i-l~~~~~~~~~--~~pg~--~e~d~~~~~~~i~~~l~~l~~ 130 (333)
+.-+|=|.||.|++..|.-||- ++|+. .......+.- ..||- ...+|+..-..+..+++-+..
T Consensus 6 ~~~kYgiviDaGSSgTrl~Vy~w~~~~g~~~~~i~~~~~~~~k~~PGiSsfa~nP~~a~~~l~pLlefA~~ 76 (501)
T KOG1386|consen 6 PNLKYGIVIDAGSSGTRLFVYKWPAESGNPLTGIVGQIYDCLKLGPGISSFADNPEGASVYLTPLLEFAKE 76 (501)
T ss_pred CcceEEEEEecCCCCceEEEEeecccCCCcccCccchhhcccccCCChhhhccChhhhHHHHHHHHHHHHh
Confidence 3457999999999999999997 45763 3333322222 23654 457788888888777765543
No 173
>COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism]
Probab=20.29 E-value=1.9e+02 Score=27.12 Aligned_cols=16 Identities=19% Similarity=0.360 Sum_probs=13.9
Q ss_pred eEEEEEeCccCceEEE
Q 037497 72 LYLGMDFGTSGARFAI 87 (333)
Q Consensus 72 ~~lGIDiGTTsiKa~l 87 (333)
.-++||+|+|=+|++-
T Consensus 19 ~~vaiDiGGtLaKvv~ 34 (342)
T COG5146 19 MKVAIDIGGTLAKVVQ 34 (342)
T ss_pred EEEEEecCceeeeeee
Confidence 4689999999999875
Done!